LOCUS       FR908157               58400 bp    DNA     linear   CON 17-SEP-2015
DEFINITION  Oncorhynchus mykiss genomic scaffold, scaffold_3885.
ACCESSION   FR908157 CCAF01000000 CCAF000000000 CCAF010000000
VERSION     FR908157.1
DBLINK      BioProject:PRJEB4421
            BioSample:SAMEA3146328
KEYWORDS    .
SOURCE      Oncorhynchus mykiss (rainbow trout)
  ORGANISM  Oncorhynchus mykiss
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus.
REFERENCE   1  (bases 1 to 58400)
  AUTHORS   Genoscope - CEA.
  JOURNAL   Submitted (13-MAR-2014) to the INSDC. Genoscope - Centre National
            de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail :
            seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr).
REFERENCE   2
  AUTHORS   Berthelot C., Brunet F., Chalopin D., Juanchich A., Bernard M.,
            Noel B., Bento P., Da Silva C., Labadie K., Alberti A., Aury J.M.,
            Louis A., Dehais P., Bardou P., Montfort J., Klopp C., Cabau C.,
            Gaspin C., Thorgaard G.H., Boussaha M., Quillet E., Guyomard R.,
            Galiana D., Bobe J., Volff J.N., Genet C., Wincker P., Jaillon O.,
            Roest Crollius H., Guiguen Y.
  TITLE     The rainbow trout genome provides novel insights into evolution
            after whole-genome duplication in vertebrates
  JOURNAL   Nat Commun 5, 3657-3657(2014).
   PUBMED   24755649
FEATURES             Location/Qualifiers
     source          1..58400
                     /organism="Oncorhynchus mykiss"
                     /mol_type="genomic DNA"
                     /note="scaffold_3885"
                     /db_xref="taxon:8022"
     mRNA            2514..3348
                     /locus_tag="GSONMT00053073001"
     5'UTR           2514..2553
                     /locus_tag="GSONMT00053073001"
     CDS             join(2554..2595,2850..2985,3260..3348)
                     /transl_table=1
                     /locus_tag="GSONMT00053073001"
                     /db_xref="GOA:A0A060Y8H1"
                     /db_xref="InterPro:IPR027640"
                     /db_xref="UniProtKB/TrEMBL:A0A060Y8H1"
                     /protein_id="CDQ87797.1"
                     /translation="MEEQVLEDHRAVFQESIRWLEDEKVLLEMTEEVDYDVDSYATQL
                     EQILDQKIDILTELRDKVKSFRSSLQEEEQASKQINPKRPRALL"
     assembly_gap    8542..9161
                     /estimated_length=620
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     mRNA            13633..16452
                     /locus_tag="GSONMT00053075001"
     5'UTR           13633..13942
                     /locus_tag="GSONMT00053075001"
     5'UTR           14230..14271
                     /locus_tag="GSONMT00053075001"
     CDS             join(14272..14322,14880..14943,15826..16019,16292..16309)
                     /transl_table=1
                     /locus_tag="GSONMT00053075001"
                     /db_xref="GOA:C1BGY4"
                     /db_xref="InterPro:IPR020373"
                     /db_xref="UniProtKB/TrEMBL:C1BGY4"
                     /protein_id="CDQ87798.1"
                     /translation="MGGKVSSTMAAVGRVVQAVKPHAPLMKFPSREGVPRLSVQETLK
                     TLAVGSPSSPPVVAPPLLSRPPRPVTLLSGTPDSVATVKELPQRYRRRALETDEMDYI
                     QRGGPE"
     3'UTR           16310..16452
                     /locus_tag="GSONMT00053075001"
     assembly_gap    21628..22319
                     /estimated_length=692
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    23563..26647
                     /estimated_length=3085
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     mRNA            complement(33314..41447)
                     /locus_tag="GSONMT00053077001"
     CDS             complement(join(33314..33777,34012..34166,37580..37707,
                     37900..37994,38083..38164,38377..38525,38660..38729,
                     38951..39024,40307..40430,40760..40894,41171..41332,
                     41370..41447))
                     /transl_table=1
                     /locus_tag="GSONMT00053077001"
                     /db_xref="GOA:A0A060YEI5"
                     /db_xref="InterPro:IPR000949"
                     /db_xref="InterPro:IPR001005"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR017884"
                     /db_xref="InterPro:IPR031156"
                     /db_xref="InterPro:IPR040138"
                     /db_xref="UniProtKB/TrEMBL:A0A060YEI5"
                     /protein_id="CDQ87799.1"
                     /translation="MKIMLWVRQWHWQCQFCRVYLIDLPFFSHSTVGSLSSEDHDFDP
                     TAEMLVHEYDDERTLEEEESLEGERNFNSEIADLEKEGNMPLEELLAIYRYEASVSTA
                     AGSSMDSFSGELTDELPDMTLDKEEIAKDLLSGDYEEETQSSADDLTPSVTSHEATDF
                     FPRTLRSNTIYDGDKESECEEDGPSLEDSRKEIMVGSQHQAEVPTHLCHYGDDKVYED
                     DDQLLWSPDVLSESKVRDFLCEASSRATDERTGSDMAGAHVSDNEQALYELVKCNYNT
                     PEALERYCSNVNSSQEESPPWSEDECRNFEHALQLYDKNFHLIQKHKVKTRTVAECVA
                     FYYMWKKSERFDFFVQQNRFGKKKYSSYPGVTDLMDRLVDEAEGLAVDSSSSVCSGGG
                     GGVRMEPTTEQQLSLLNSITASDLTALSNSVATVCSPAEVSCLDSYGFPPLESLHRGS
                     LAQEEPLGFPSNGGDPDCLNMLDAGFYHSDLGQRGGVYGGKDCERPSKRLKLALPDSF
                     INDVSVGNLGVDFEGRRNTAHHRITGAKMAVSVTDFGGLAGSGEPNGFMGAHARRHST
                     ALQSE"
CONTIG      join(CCAF010084904.1:1..8541,gap(620),CCAF010084905.1:1..12466,gap
            (692),CCAF010084906.1:1..1243,gap(3085),CCAF010084907.1:1..31753)
//