LOCUS       FJ823065                 659 bp    RNA     linear   VRL 24-JUL-2016
DEFINITION  Human astrovirus 1d strain JP-HasTV-09-2006/7 RNA-dependent
            RNA-polymerase and capsid protein genes, partial cds.
ACCESSION   FJ823065
VERSION     FJ823065.1
KEYWORDS    .
SOURCE      Human astrovirus 1d
  ORGANISM  Human astrovirus 1d
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes;
            Stellavirales; Astroviridae; Mamastrovirus; Mamastrovirus 1.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Ushijima,H. and Dey,S.K.
  TITLE     Epidemiological trend of sapovirus, and astrovirus infection in
            Japan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Ushijima,H. and Dey,S.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2009) Department of Developmental Medical
            Sciences, Institute of International Health, Graduate School of
            Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo
            113-0033, Japan
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Human astrovirus 1d"
                     /mol_type="genomic RNA"
                     /strain="JP-HasTV-09-2006/7"
                     /isolation_source="diarrheal stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:632743"
                     /geo_loc_name="Japan"
     CDS             <1..46
                     /codon_start=2
                     /product="RNA-dependent RNA-polymerase"
                     /protein_id="ACO81871.1"
                     /translation="LHRIWRGGPKKCDG"
     CDS             39..>659
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="ACO81872.1"
                     /translation="MASKSNKQVTVEVSNNGRNRSKSRARSQSRGRDKSVKITVNSRS
                     RARRQPGRDKRQSSQRVRNIVNKQLRKQGVTGPKPAICQRATATLGTVGSNTSGTTEI
                     EACILLNPVLVKDATGSTQFGPVQALGAQYSMWKLKYLNVKLTSMVGASAVNGTVLRV
                     SLNPTSTPSSTSWSGLGARKHLDVTVGKNATFKLKPSDLGGPRMAWG"
BASE COUNT          188 a          158 c          169 g          144 t
ORIGIN      
        1 actccatcgc atttggaggg gaggaccaaa gaagtgtgat ggctagcaag tccaacaagc
       61 aggtaactgt tgaggtcagt aacaatggcc gcaacaggag taaatcaagg gcccgttcac
      121 aatctagggg ccgagacaaa tcagtcaaga ttacagtcaa ttcaagaagc agagctagga
      181 gacagcccgg acgcgacaaa cgtcaatctt ctcaacgtgt ccgtaacatt gtcaataaac
      241 aactcaggaa acaaggtgtc acaggaccaa aacctgcgat atgtcagaga gcaacagcaa
      301 cccttggaac ggtcgggtca aacaccagtg gcactaccga gattgaggcg tgtattctcc
      361 tcaaccctgt ccttgttaag gacgctactg ggagcactca gtttggccct gtgcaggcgc
      421 taggtgctca gtattccatg tggaaactga agtatctgaa tgtcaaactg acttctatgg
      481 ttggtgcgtc tgccgtcaat ggcactgtcc ttagagtttc acttaaccca acatctacac
      541 cgtcatccac tagttggtca gggttaggtg cacgtaagca ccttgatgtt acagtgggca
      601 aaaatgcaac attcaaattg aaaccctctg acctcggtgg gcctaggatg gcttggggg
//