LOCUS FJ593501 4928 bp cRNA linear VRL 27-JUL-2009 DEFINITION Jemez Springs virus strain MSB144475 RNA-dependent RNA polymerase gene, partial cds. ACCESSION FJ593501 VERSION FJ593501.1 KEYWORDS . SOURCE Jemez Springs virus ORGANISM Jemez Springs virus Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Hantaviridae; Mammantavirinae; Orthohantavirus. REFERENCE 1 (bases 1 to 4928) AUTHORS Kang,H.J., Bennett,S.N., Dizney,L., Sumibcay,L., Arai,S., Ruedas,L.A., Song,J.W. and Yanagihara,R. TITLE Host switch during evolution of a genetically distinct hantavirus in the American shrew mole (Neurotrichus gibbsii) JOURNAL Virology 388 (1), 8-14 (2009) PUBMED 19394994 REFERENCE 2 (bases 1 to 4928) AUTHORS Kang,H.J., Bennett,S.N., Sumibcay,L., Arai,S., Hope,A.G., Mocz,G., Song,J.-W., Cook,J.A. and Yanagihara,R. TITLE Direct Submission JOURNAL Submitted (23-DEC-2008) Tropical Medicine and Medical Microbiology and Pediatrics, John A. Burns School of Medicine, University of Hawaii at Manoa, 651 Ilalo, Honolulu, HI 96813, USA FEATURES Location/Qualifiers source 1..4928 /organism="Jemez Springs virus" /mol_type="viral cRNA" /strain="MSB144475" /isolation_source="tissue lysate" /host="Sorex monticolus" /db_xref="taxon:466215" /segment="L" /geo_loc_name="Canada" /collection_date="10-Jul-2005" CDS <1..>4928 /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="ACT68344.1" /translation="AGLHFIEQELKHAFHRGEILQPYRVVFNVVAVRTDGSNISTQWP SRRNDGVVQYMRMVQAEINYVREHLIKPEERSALEAMFNLKFHIGGLKIQNYYIPDYP GIDSIHPSLDELVKYCKDWMSGQHNFVFHEVTGRNVLEEFEKNEELHYGRYGLSSHPR NFLLVQCALNRGYYPATIASDQIDTRNACHDILRFQPNSGVTALVLDMAYRYLNLEKV DLMSFYSSKATFEPTPNVKTPGTFKLPSSQMRDESKFLLEMISKHEQGSGHAKTIESI EIRSQTAQNECIGTITKILSNLEMNIGEPVRFEQPAAKHTYVDTVLEKFYQNELQKYM VDVLKKTTAWHIGHLIRDISESLIAHSGLRRSKYWSLHAYGNGSVLLCILPSKSLESA GSYIRFITVFRFGPGLVDPGNLDCILEDETGSWAVSKVMSLDLNRLLALNIAFEKALI ATATWFQYYTEDQGQFPLQHALRSVFAYHMLLSVCQKMKVCAIFDNVRYLIPAVTSLY SGFPSLIENLFDRPFKTALEVYIYNSIKSLLVALAQNNKARYYSKIRLLGLTVDQSTV GASGVYPSFLSKVIYKHYKSLISEVTTCFFLFEKGLHGNVNEEAKIHLETVEWAYKFR EKRGQAWNTLVENGYRIFDLYLNPNLVAQQLYCQDVVELGAIELNNVLLSKTQVVGNS ILNKHWDQPYFSQTRNISLKGMSGALQEDGHLASSVTLIEAIRYLNNSRINPSLLQLY EETRNAKAQARIVRKFQRTEADRGFFITTLPTRCRLEVIEDYYDAIAKNVPEEYISYG GERKILNIQQALEKALRWAAGESFIELSTGKMIRMKRKLMYVSADATKWSPGDNSAKF RRFTAMLHNGLNDNKLRNCVIDALTQIYKTDFFMSRKLRKYINAMKEHDPNVKDFLRF FPDGHCGEVHGNWLQGNLNKCSSLFAVGMSLLFKRVWKELFPELDCFFEFAHHSDDGL FIYGYLEPIDDGTDWFLYVTQQIQAGNHHWFNVNTEMWKGMFNLHEHILLMGSIKVSP KKTTVSPTNAEFLSTFFEGCAVSIPFIKILLGSLSDLPGLGYFDDLAAAQSRCVKALD LGASPQVAQLAIGLCTNKVERLYGTAPGMINHPASYLGVKHSDTPIPLGGNGAMSIME LATSGIGMSDKNLLKRALIGYQHKRRKQDQYILGLFKFLMNLSDETFNHERLGEFSFT GKVQWKIFTPKSEFEFYDMYTKHFIETWSEQHPTYDYIIPRSRDNLLVYLVRKLNDPS IVTAMTMQSPLQLRFRMQAKQHMKVCKMDGEWVTFRAVLAAADSFASAYEPSSQDMDL FNTLTSCTFSKEYAWKDFLNNVQCDVIPMKQVQRPKVARVFTVREKDQVIQNSITSVI GYRFAITVEEISDVMDAARFPDSLAADLKTMRDGVYRELGLDIGYPKIMKRVAPLLYK SSKSRVVIVQGNVEGTAEAICGYWLKAMSLVKTIKITPHKEVLKAVSIFNRKEDIGRQ KDLAALRLCIEIWRWAKANDAPYRDWFHSLWFEDKTFAEWVDRFVRVGVPPIDPEIQC AALMIADIKGDMSVLQMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDC ARLEIFWDKKTYILETSITQKHVLKLMMEEVT" BASE COUNT 1602 a 803 c 1092 g 1431 t ORIGIN 1 gcaggcctgc atttcattga acaggaactt aagcatgcat ttcatagagg agagattctt 61 caaccctaca gggtagtatt taacgtagtg gcagtaagga cagatggttc taacatctcc 121 acccaatggc caagtaggag aaatgatgga gtagtgcaat atatgaggat ggttcaggca 181 gaaatcaatt atgtgagaga gcacttaata aagccagagg agagatctgc ccttgaggcc 241 atgtttaact taaaatttca tataggggga cttaagattc aaaactatta tatcccggac 301 taccctggaa tcgatagcat ccatccatca ttagatgagt tagttaagta ttgtaaggac 361 tggatgagtg gtcagcataa tttcgtgttt catgaggtaa cagggaggaa tgtgcttgaa 421 gagtttgaga aaaacgaaga attacattat ggtagatatg gcttatcatc ccatcctagg 481 aattttcttc ttgtgcaatg tgctttaaat agaggttatt atccagcaac aattgcatct 541 gatcaaatag atacccgcaa tgcctgccat gatatacttc gattccaacc gaatagtgga 601 gtaactgcac ttgttctgga tatggcttat aggtatctga atctagagaa agttgattta 661 atgagttttt attcatctaa agcaactttc gagccaacac cgaatgttaa gacaccaggt 721 acattcaaat tgccctcttc ccaaatgagg gatgagtcaa aattcttatt ggaaatgata 781 agtaagcatg agcaagggtc agggcatgca aagacaattg aaagtattga gattagaagc 841 caaactgcac aaaatgagtg tatagggaca ataacaaaga tactatcaaa tttggagatg 901 aatattggag aaccagtacg gttcgaacag ccagctgcta agcacacata tgtagatact 961 gtattagaaa agttctatca aaatgaacta caaaagtata tggttgatgt actaaagaag 1021 actacagcct ggcatatagg tcacctcata agggatatat ctgaaagtct tattgctcac 1081 tctggattga ggagatcaaa atattggtct cttcatgcat atggtaatgg ttcagtcctg 1141 ttatgcattc tcccatcaaa gtcattagag tctgcaggtt catatataag atttatcaca 1201 gttttccgct ttggacctgg tctagttgac ccagggaatt tagactgtat actggaggat 1261 gagacaggaa gctgggctgt ttcaaaagtc atgagtcttg acctaaatag actattggcc 1321 ttaaacattg catttgagaa ggcactaata gccactgcta catggtttca atattataca 1381 gaggatcagg gccaatttcc actacaacat gccttacgat ctgtgtttgc ttatcatatg 1441 ttgttatctg tctgtcaaaa gatgaaggta tgtgccatat ttgataatgt aaggtacttg 1501 attccagctg tcacttccct ttattctgga ttcccttcat taattgaaaa tctttttgac 1561 aggccattta agacagcact tgaagtttac atttataatt ctataaagag cctcctggta 1621 gctttggcac aaaataacaa agcacggtac tactcgaaga tccgcctact aggtctaaca 1681 gttgatcaat ctactgttgg tgcaagtggt gtatatccat catttctgtc taaagtgata 1741 tataaacact ataaaagttt gatatcagaa gtaaccacat gtttttttct atttgagaag 1801 ggcctacatg gtaatgtgaa tgaggaagca aagatccact tagaaactgt ggaatgggca 1861 tataaattcc gtgaaaaaag aggacaagca tggaacacat tggtcgaaaa tggatatcgg 1921 atttttgatc tatacctgaa tcctaatctg gtggctcagc agttatattg tcaggatgtg 1981 gtggagctag gggctattga attgaataat gttttgttat caaaaacaca ggttgtaggt 2041 aattcaatac ttaataagca ttgggaccaa ccttatttta gtcagacaag gaatatcagt 2101 ctgaaaggaa tgtctggagc tttacaggag gacggccatt tagcatcatc agtaacattg 2161 attgaagcaa tacggtacct aaataactct aggatcaatc ctagtttact acaactatat 2221 gaggaaacca gaaatgctaa ggctcaggca aggattgtta ggaaattcca gcggacagaa 2281 gcagatagag ggttttttat aacaacactg ccaacaagat gcagacttga agtcattgag 2341 gattattatg atgcgattgc aaagaatgtc ccagaagagt atatatcata tggtggggag 2401 agaaaaattc tgaatataca gcaggcacta gaaaaggctt tgcgatgggc tgcaggagaa 2461 agttttatag agttgtcaac tgggaagatg attcgtatga agaggaaatt gatgtatgtt 2521 agtgctgatg caacaaaatg gtcacctggg gacaactcag caaaatttag acgatttact 2581 gcgatgttgc ataatggact aaatgataat aaacttcgga attgtgtcat cgatgcattg 2641 acacagattt acaagacaga tttttttatg tcaaggaaac tacggaagta tatcaatgca 2701 atgaaagagc atgaccctaa tgttaaagac tttcttaggt tttttcctga cggccattgt 2761 ggggaagtac atgggaattg gttgcaagga aacttgaata aatgttcatc gctgtttgca 2821 gtaggaatgt cattgttatt taagcgagta tggaaggaac tttttccaga acttgattgt 2881 ttctttgaat ttgcccacca ctctgatgat ggtctattta tatatggtta tcttgaacct 2941 attgatgatg ggactgattg gtttctgtat gtaacacaac aaattcaggc tggaaatcat 3001 cattggttta atgtgaatac tgagatgtgg aaagggatgt ttaatctaca tgagcatata 3061 ttactgatgg gctctataaa ggtgtcacca aagaagacaa ctgtatcacc aacaaatgct 3121 gagtttctat ccacattttt cgaaggatgt gctgtttcaa ttccctttat aaagatactg 3181 ctaggttcgc tatcagattt accaggtctt ggttactttg acgatcttgc tgcagctcaa 3241 agtcgatgtg ttaaggctct tgatctaggt gcaagcccac aagtagctca actagccatt 3301 ggtctctgta ccaataaagt tgaacgacta tatggtacag cacccggcat gataaaccat 3361 ccagcctcat atttaggagt gaaacactct gatacaccaa ttccactagg tgggaatggt 3421 gctatgtcaa ttatggagct cgcgacatct ggaatcggga tgtctgacaa aaatttgtta 3481 aagagagcac taataggtta tcaacacaaa aggcgaaagc aagaccagta tatcttaggt 3541 ttattcaaat ttcttatgaa cctaagtgat gaaacattta atcatgagag gttgggggaa 3601 ttctcattta caggtaaagt tcaatggaaa atatttacac ctaaaagtga gtttgaattc 3661 tatgatatgt acacgaagca ttttatagag acttggagtg agcaacatcc tacatatgat 3721 tatattattc caaggtcacg tgataacctc cttgtttacc tagttagaaa gttaaatgac 3781 cctagtatag ttactgcaat gacaatgcaa tcacctcttc agctacgctt taggatgcaa 3841 gcgaagcaac atatgaaagt ctgtaaaatg gatggtgaat gggtaacatt tagggcagta 3901 ctagcagcag ccgatagttt cgcatcagct tatgagccat ctagtcagga tatggattta 3961 ttcaatacat taacttcttg taccttctca aaggaatatg cctggaagga ctttctcaat 4021 aatgtccagt gtgatgtgat accaatgaaa caggttcaac ggccaaaagt tgctagagta 4081 tttactgtga gagagaagga tcaagtgatc caaaattcaa ttacttcagt gattggatat 4141 aggtttgcaa tcacagttga agaaatatct gacgttatgg atgcagcacg gtttcctgac 4201 tctctagctg ctgatttgaa aacaatgaga gatggtgtct atagagaatt agggttagat 4261 ataggctatc caaaaatcat gaaaagggtg gcacccttgc tgtataagtc ttcaaaatca 4321 agggttgtta ttgttcaagg gaatgttgag gggactgcag aggcaatctg tggttattgg 4381 ttgaaagcaa tgtcactggt gaagacaatt aagatcacac ctcataaaga agtattaaag 4441 gctgtatcaa tctttaatag aaaagaggac atagggcgac agaaggatct agcagcacta 4501 cggctttgta tagagatctg gagatgggct aaagcaaatg atgcaccata tagggactgg 4561 tttcattcat tgtggttcga agataagaca tttgcagaat gggttgatag gtttgtgaga 4621 gtaggtgtgc caccgataga ccctgaaatc caatgtgcag ctctgatgat tgcagatatt 4681 aaaggagata tgtctgtatt acagatgcag gccaacagac gtgcttattc aggaaaacag 4741 tatgatgctt attgcgtgca aacttacaat gaagagacta aattatatga aggggattta 4801 agggtgacat tcaactttgg attagattgt gctagattag aaatattttg ggataaaaag 4861 acatatatat tggaaacatc tatcacccag aaacatgtac tgaagctaat gatggaggaa 4921 gtaacaaa //