LOCUS FJ538006 5917 bp DNA linear VRT 08-APR-2009 DEFINITION Bambusicola thoracica clone INFG-142 interferon-gamma (IFNG) gene, complete cds. ACCESSION FJ538006 VERSION FJ538006.1 KEYWORDS . SOURCE Bambusicola thoracicus (Chinese bamboo-partridge) ORGANISM Bambusicola thoracicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Bambusicola. REFERENCE 1 (bases 1 to 5917) AUTHORS Downing,T., Lynn,D.J., Connell,S., Lloyd,A.T., Bhuiyan,A.K., Silva,P., Naqvi,A.N., Sanfo,R., Sow,R.S., Podisi,B., O'Farrelly,C., Hanotte,O. and Bradley,D.G. TITLE Contrasting evolution of diversity at two disease-associated chicken genes JOURNAL Immunogenetics 61 (4), 303-314 (2009) PUBMED 19247647 REMARK Erratum:[Immunogenetics. 2009 May;61(5):421-2] REFERENCE 2 (bases 1 to 5917) AUTHORS Downing,T., Lynn,D.J., Connell,S., Lloyd,A.T., Fazlul Haque Bhuiyan,A.K., Navqi,A., Sanfo,R., Sow,R.S., Podisi,B., O'Farrelly,C., Hanotte,O. and Bradley,D.G. TITLE Direct Submission JOURNAL Submitted (09-DEC-2008) Smurfit Institute of Genetics, Trinity College, Lincoln Place, Dublin 2, Ireland FEATURES Location/Qualifiers source 1..5917 /organism="Bambusicola thoracicus" /mol_type="genomic DNA" /db_xref="taxon:9083" /clone="INFG-142" gene <1..>5917 /gene="IFNG" mRNA join(<1016..1138,2968..3036,3392..3571,4248..>4370) /gene="IFNG" /product="interferon-gamma" CDS join(1016..1138,2968..3036,3392..3571,4248..4370) /gene="IFNG" /codon_start=1 /product="interferon-gamma" /protein_id="ACL97529.1" /translation="MTCQTYNLFVLSVIMIYYGHTASSLNLVQLEDDIDKLIADFXXX XXXXXXXXXIIVEKLKNWTERNEKRIILSQIVSMYLEMLENTDKSKPHIKHISEELYT LKNNLPDGVKKVKDIMDLAKLPMNDLRIQRKAANELFSILQKLVDPPSFERKRSQSQR RCNC" gap 1322..1745 /estimated_length=424 gap 2410..3002 /estimated_length=593 gap 4378..5164 /estimated_length=787 BASE COUNT 1146 a 851 c 880 g 1131 t ORIGIN 1 ctctgacttc attataaaaa tctgcacagt gagctttttt gtaatctaat gatattcctc 61 aaagcagagt tcagtgccta cacaagaacc ccatctccaa caaccttcaa cagatatgtt 121 gcaggggtct atatacacct ggagatcatc ctgtttgtct gcttccactg ggcttttttg 181 aacaatgtcc ttctattttc atatttccca tatgtaagtg caagttaata cgcaaggtaa 241 ggaacttcag ccattgtcag acacagatga gtgccttgag tagaaaatat cctgcttttg 301 cagatagtag ggaatcacag agaaatttaa tatatcattg catccatgct agaacctctt 361 tttctctaag tctagtttga attcaggggt aaataatgag aaagtgctag aatagacttt 421 agactatgaa aagaatgaca gtagtgtttc atgaaaggac agcactaagg ggatttaaaa 481 tttaaaatga ttctgatgtc tgccacagca gtatcagtgg ttactttaaa agaataccag 541 aaatgagttg actgttgtat tgacccctta accacatgat acaatttttc agatagcttg 601 taagagtatg cctaagccac aagggctact cctaaatcag tatcataatt tccctctttt 661 tccccaccac gggtaaaaga aacttcagaa agtgccacgt aaattttacc ctctgatgaa 721 ccgctgaaaa attttccagg accatgcttt aagaaagaca ctttcgaggg attccctcaa 781 ccagcctata gcaaaatctt atctaacact atcttggcta aatatacaca gcccgtgatg 841 acgaaataaa aaaatttcaa gaccaggtat aaataccact cacaggcaga tgaagttcat 901 tcgtctactt tcttctaata gaagacataa ctattagaag ctgaagctca ctgagcttat 961 atctgacatc tcccagaagc tatctgagca tttgaactga gccatcacca agaagatgac 1021 ttgccagact tacaacttgt ttgttctgtc tgtcatcatg atttattatg gacatactgc 1081 aagtagtcta aatcttgttc aacttgaaga tgatatagac aaactgatag ctgactttgt 1141 aagtattgtc ttctactgga tttctcttct ccttctgctt ctggtgctat agaaataaat 1201 gcagtagtgc tgtatagcaa tgcttatcct agacctcagt gtatatcaat atatagtata 1261 gggtgagtat agaattattt tttctgttac cttttttttt tttttttgga caataatacg 1321 gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1381 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1741 nnnnnattag tcatacagat aatagatcta caatagcggc acttcatctg aatctttcat 1801 cttaatctac ctttggtttt gtttctgttt ttctttaatc tcatggaagt cacagcaaaa 1861 gtcggtacct acttccagct ctgatttttc agaattttgt gcttgcaaaa ctgaaattta 1921 gtagtcaaag agtcacctca gagactcggt gtaatgcttt attgttccaa attgctagga 1981 gaccagctgc aaaatcagcc ttatgtccta aatttgtcat tagtacagac aagagacgtt 2041 catactagaa tacatagaac tcagcctgag agatcctgag cagtggtgag cttctggcag 2101 agagcttaag aactgcagcc ggcagcagat gctttgccac ccttcagacc tgcagagtcg 2161 gcttcggcaa agtgctcggc accaggagcc tatcagcctg cggggttacc gtcagcctgc 2221 aagctttccc attacactca cggtatttat attaccaagc agacgaaaaa ggaaatagaa 2281 gctgttgtac ataaaaagaa ggacaaaaca tagaaaagga aatgattaag ttagcccttc 2341 cttggtggga gaattgtatt gttctgtttc ctagagcctg ccacagtgtg tggctaacac 2401 ctgatggttn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3001 nntattattg tagagaaact gaagaactgg acagaggtga gtcagaacca gacacgacaa 3061 aacatctcat ctgctctgaa gggcactttt ggtaaaaagc agctccaagg ccagtgtaac 3121 cagcctgggc agagagaata caagtagagg ctgcttcagt agctcggaaa tgagaaagca 3181 gcttccctta aaatacatct cttgaagttc agtgtgcttt atgcggcacc atgagctgat 3241 cctgaggtac agccaagccc cagagaggac ttagagcatc ttctttgtca tgatgtcact 3301 agcagcagag aggaccctgg attttagttt ccttcatttt cctcttgatg gtcactcaca 3361 gacctttctt tttgaatgta ttcttcaaca gagaaatgag aaaaggatca tactgagcca 3421 gattgtttcg atgtacttgg aaatgcttga aaacactgac aagtcaaagc cgcacatcaa 3481 acacatatct gaggagctct atactctgaa aaacaacctt cctgatggcg tgaagaaggt 3541 gaaagatatc atggacctgg ccaagctccc ggtaaggctc tttgtctgcc tccaaggcac 3601 ttgtgacctt gtgttttcca gtttagagtc ctgacgcagg gcagcgttgg tttggtaacg 3661 cacctggtaa cccccagccg gctccacttg ggctggaaag tgtgatgttt ccactgtgtg 3721 tggggaatcg cactggggct gcacaccctg agccttgaca gagcctggca tagagacacc 3781 agaagctgct ccaggtgatt agaagttggg ttgggaagtt gtgcctggct acagcacatc 3841 tctgtgggct ctgggtcnnn nnnnnnnnnn nnnnnnnnnn natgagtgct tgcggtgtga 3901 gccaccaact tctgccgatc tctgtgctct ggaggcgctg gctgctggtg ggtacnnnnn 3961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngagtacctc cgttnnnnnn 4021 nnnntgcttg gtctgctaca ctgcaaagta acagagaagg cagaaaacag aaatctgtga 4081 aaaagcggtt cttagtttcn nnnnnnnnna ggaaccgggc ggtagaataa ccnnnnnnnn 4141 nnagtttcta ttctgagtca ttagcagtta agcctgaggg atgcaatcag taaataaata 4201 cagctctcgg tgtgaccttt gttctgtctg tttcttgctc aaaacagatg aacgacttga 4261 gaatccagcg caaagccgcg aatgaactct tcagcatttt acagaagctg gtggatcctc 4321 caagtttcga aaggaaaagg agccagtctc agaggagatg caattgctaa tggcgtcnnn 4381 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4921 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5161 nnnntgaagn nnnnacaaaa gacagccata cacaggtaga tgtaggcata tttcagttcc 5221 gtctctctgc ccaaggtctg ggaatggatt tggatagtcc acgaggcttg ggcttgaggc 5281 ggggagtttg tgggacttcc cagttttcag gccccaaggg tgctaccaaa taaacactct 5341 aggggcagat tggttgaggt gactgggtac agggcaggtt ttctttggga ttcctgccac 5401 catgagactt ccagcctacc ccaaactttg gctgaatccg taagctgaag cagtaacgca 5461 tcactgtgcc caaagtttag ttgcaataaa cccagtgggt ttagctctaa ttgctgcagc 5521 cttttctact tccttgggcc cagttgtctt ccctggtgta agacaccttc attcatgccc 5581 ccattttata gtcataacaa aatgactcat taatcctgga gacttgaact gattttgaag 5641 gaaacagctg ttcttgttta tactcatcac agccatgtat gtgcttgcga catgcaagtg 5701 atacaatgct gtgggatttc tccagtttat ggactatgca tgagaagcct cagtacgcat 5761 ttaacatagg cagtgcatct ttctgtgtat gtatcgttac acaaggtgtt actgagaagg 5821 gaacaaacag ctctcctcca gggaagcaaa gccagctgcg tcacctaatg tatgaaggaa 5881 gggtaaggaa caagtcaaag tttcattagg aaccaac //