LOCUS       FJ381573                 737 bp    DNA     linear   VRT 16-JUN-2011
DEFINITION  Mccoskerichthys sandae voucher SIO 01-167-1 rhodopsin gene, partial
            cds.
ACCESSION   FJ381573
VERSION     FJ381573.1
KEYWORDS    .
SOURCE      Mccoskerichthys sandae (tufted blenny)
  ORGANISM  Mccoskerichthys sandae
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Blenniimorphae; Blenniiformes;
            Blennioidei; Chaenopsidae; Mccoskerichthys.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Lin,H.C. and Hastings,P.A.
  TITLE     Evolution of a Neotropical marine fish lineage (Subfamily
            Chaenopsinae, Suborder Blennioidei) based on phylogenetic analysis
            of combined molecular and morphological data
  JOURNAL   Mol. Phylogenet. Evol. 60 (2), 236-248 (2011)
   PUBMED   21550409
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Lin,H.-C. and Hastings,P.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2008) Marine Biology Research Division, Scripps
            Institution of Oceanography, 9500 Gilman Dr., La Jolla, CA 92037,
            USA
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Mccoskerichthys sandae"
                     /mol_type="genomic DNA"
                     /specimen_voucher="SIO 01-167-1"
                     /db_xref="taxon:642458"
     mRNA            <1..>737
                     /product="rhodopsin"
     CDS             <1..>737
                     /codon_start=1
                     /product="rhodopsin"
                     /protein_id="ACQ43892.1"
                     /translation="TLYVTLEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHG
                     YFVLGRLGCNLEGFFATLGGEIGLWSLVVLAIERWVVVCKPISNFRFGENHAIMGLAF
                     TWLMACACAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNESFVVYMFVCHFCIPLV
                     IVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVVIMVFAFLICWLPYASVAWFI
                     FTHQGSEFGPLFMTVPAFFAKSSSIYNP"
BASE COUNT          128 a          231 c          184 g          193 t
ORIGIN      
        1 actctctacg tcaccctcga acacaagaag ctgcgaaccc ctctaaacta catcctgctg
       61 aatctcgcgg tggctgacct cttcatggtg ttcggaggat tcaccacaac gatgtacacc
      121 tccatgcacg gctacttcgt cctcggtcgc ctyggctgca acctggaagg attctttgct
      181 accctcggcg gtgagattgg cctctggtca ctggtcgttc tggctattga aaggtgggtg
      241 gttgtctgca agcccatcag caacttccgc ttcggagaga accacgccat catgggcctg
      301 gccttcacct ggttgatggc ctgcgcttgc gctgttcccc cactcgtcgg ctggtcccgt
      361 tacatccccg agggcatgca gtgctcatgt ggagtcgact actacacacg cgccgaggga
      421 ttcaacaacg agtccttcgt tgtctacatg ttcgtttgcc acttctgcat ccctctggtc
      481 attgtgtttt tctgctacgg ccgtctgctc tgcgctgtca aggaggctgc tgctgcccag
      541 caggagtccg agaccaccca gagggctgag agggaagtca cccgcatggt cgttatcatg
      601 gtcttcgcct tcctgatatg ttggttgccc tatgccagtg tggcctggtt cattttcaca
      661 catcagggct ctgaattcgg acccctcttc atgaccgtcc cagccttctt tgccaagagt
      721 tcctccatct acaaccc
//