LOCUS FJ008058 3652 bp mRNA linear VRT 22-SEP-2008 DEFINITION Xenopus laevis paraxial protocadherin (PAPC) mRNA, complete cds. ACCESSION FJ008058 VERSION FJ008058.1 KEYWORDS . SOURCE Xenopus laevis (African clawed frog) ORGANISM Xenopus laevis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus. REFERENCE 1 (bases 1 to 3652) AUTHORS Chen,X. and Gumbiner,B.M. TITLE Paraxial protocadherin mediates cell sorting and tissue morphogenesis by regulating C-cadherin adhesion activity JOURNAL J. Cell Biol. 174 (2), 301-313 (2006) PUBMED 16847104 REFERENCE 2 (bases 1 to 3652) AUTHORS Chen,X., Molino,C., Liu,L. and Gumbiner,B.M. TITLE Structural elements necessary for oligomerization, trafficking, and cell sorting function of paraxial protocadherin JOURNAL J. Biol. Chem. 282 (44), 32128-32137 (2007) PUBMED 17823115 REFERENCE 3 (bases 1 to 3652) AUTHORS Chen,X. and Gumbiner,B.M. TITLE Direct Submission JOURNAL Submitted (08-AUG-2008) Cell Biology, University of Virginia, 1300 Jefferson Park Ave., Charlottesville, VA 22908, USA FEATURES Location/Qualifiers source 1..3652 /organism="Xenopus laevis" /mol_type="mRNA" /db_xref="taxon:8355" /note="sequence was derived from the same cDNA as AF042192" gene 1..3652 /gene="PAPC" CDS 138..3077 /gene="PAPC" /note="experimental results show that paraxial protocadherin does not function as a cell-cell adhesion molecule but can indirectly regulate cell adhesion by modulating classical cadherin function" /codon_start=1 /product="paraxial protocadherin" /protein_id="ACH85236.1" /translation="MLLLFRAIPMLLLGLMVLQSDCQIAQYYIDEEEPPGTVIAVLSQ HSIFNTTDIPATNFRLMKQFNNSLIGVRESDGQLSIMERIDREQICRQSLHCNLALDV VSFSKGHFKLLNVKVEVRDINDHSPHFPSEIMHVEVSESASVGTRIPLEIAIDEDVGS NSIQNFQISNNSHFSIDVLTRADRVKYADLVLMRELDREIQPTYIMELLAMDGGVPSL SGTAVVNIRVLDFNDNSPVFERSTIAVDLVEDAPLGYLLLELHATDDDEGVNGEIVYG FSTLASQEVRQLFKINSRTGSVTLEGQVDFETKQTYEFEVQAQDLGPNPLTATCKVTV HILDVNDNTPAITITPLTTVNAGVAYIPETATKENFIALISTTDRDSGSNGQVRCTLY GHEHFKLQQAYEDSYMIVTTSTLDRENIAEYTLTVVAEDLGFPSLKTKKYYTVKVSDE NDNAPVFSKPQYEASILENNAPGSYITTVIARDSDSDQNGKVNYRLVDAKVMGQSLTT FVSLDADSGVLRAVRSLDYEKLKQLDFEIEAADNGIPKLSTRVQVNLRIVDQNDNCPV ITNPLLNNGSGEVLLPISAPQNYLVFQLKAEDSDEGHNSQLFYTILRDPSRLFAINKE SGEVFLKKQLNSDHSEDLSIVVAVYDLGRPSLSTNATVKFILTDSFPSNVEVVILQPS AEEQHQTDMSIIFIAVLAGGCALLLLAIFFVACTCKKKAGEFKQVPEQHGTCNEERLL STPSPQSVSSSLSQSESCQLSINTESENCSVSSNQEQHQQTGIKHSISVPSYHTSGWH LDNCAMSISGHSHMGHISTKDSGKGDSDFNDSDSDTSGESQKKSIEQPMQAQASAQYT DESAGFRHADNYFSHRINKGPENGNCTLQYEKGYRLSYSVAPAHYNTYHARMPNLHIP NHTLRDPYYHINNPVANRMHAEYERDLVNRSATLSPQRSSSRYQEFNYSPQISRQLHP SEIATTF" BASE COUNT 1092 a 780 c 751 g 1029 t ORIGIN 1 gaattcccag agatgaactc cttgagattg ttttaaatga ctgcaggtct ggaaggattc 61 acattgccac actgtttcta ggcatgaaaa aactgcaagt ttcaactttg tttttggtgc 121 aactttgatt cttcaagatg ctgcttctct tcagagccat tccaatgctg ctgttaggac 181 tgatggtttt acaatcagac tgtcaaattg cccagtacta catagatgaa gaagaacccc 241 ctggcactgt aattgcagtg ttgtcgcaac actccatatt taacactaca gatatacctg 301 caaccaattt ccgtctaatg aagcaattta ataattccct tatcggagtc cgtgagagtg 361 atgggcagct gagcatcatg gagaggattg accgggagca gatctgcagg cagtcccttc 421 actgcaacct ggctttggat gtggtcagct tttccaaagg acacttcaag cttctgaatg 481 tgaaagtgga ggtgagagac attaatgacc atagccctca ctttccaagt gaaataatgc 541 atgtggaggt gtctgaaagt gcctctgtgg gcaccaggat tcctttagaa attgcaatag 601 atgaagatgt tgggtccaac tccatccaga actttcagat ctcaaataat agccacttca 661 gcattgatgt gctaaccaga gcagatcggg tgaaatatgc agatttagtc ttaatgagag 721 aactggacag ggaaatccag ccaacgtaca taatggagct actagcaatg gatgggggtg 781 taccatcact atctggtact gcagtggtta acatccgagt cctggacttt aatgataaca 841 gcccagtgtt tgagagaagc accattgctg tggacctagt agaggatgct cctctgggat 901 accttttgtt ggagttacat gctactgacg atgatgaagg agtgaatgga gaaattgtct 961 atggattcag cactttggca tctcaagagg tacgtcagct atttaaaatt aactccagaa 1021 ctggcagtgt tactcttgaa ggccaagttg attttgagac caagcagact tacgaatttg 1081 aggtacaagc ccaagatttg ggccccaacc cactgactgc tacttgtaaa gtaactgttc 1141 atatacttga tgtaaatgat aataccccag ccatcactat tacccctctg actactgtaa 1201 atgcaggagt tgcctatatt ccagaaacag ccacaaagga gaactttata gctctgatca 1261 gcactactga cagagactct ggatctaatg gacaagttcg ctgtactctt tatggacatg 1321 agcactttaa actacagcaa gcttatgagg acagttacat gatagttacc acctctactt 1381 tagacaggga aaacatagca gagtacactt tgacagtagt tgcagaagac cttggcttcc 1441 cctcattgaa gaccaaaaag tactacacag tcaaggttag tgatgagaat gacaatgcac 1501 ctgtattttc taaaccccag tatgaagctt ctattctgga aaataatgct ccaggctctt 1561 atataactac agtgatagcc agagactctg atagtgatca aaatggcaaa gtaaattaca 1621 gacttgtaga tgcaaaagtg atgggccagt cactaacaac atttgtttct cttgatgcgg 1681 actctggagt attgagagct gttaggtctt tagactatga aaaacttaaa caactggatt 1741 ttgaaattga agctgcagac aatgggatcc ctaaactctc cactcgcgtt caagtgaatc 1801 tcagaatagt tgatcaaaat gataattgcc ctgtgataac taatcctctt cttaataatg 1861 gctcgggtga agttctgctt cccatcagcg ctcctcaaaa ctatttagtt ttccagctca 1921 aagccgagga ttcagatgaa gggcacaact cccagctgtt ctataccata ctgagagatc 1981 caagcagatt gtttgccatt aacaaagaaa gtggtgaagt gttcctgaaa aaacaattaa 2041 actctgacca ttcagaggac ttgagcatag tagttgcagt gtatgacttg ggaagacctt 2101 cattatccac caatgctaca gttaaattca tcctcaccga ctcttttcct tctaacgttg 2161 aagtagttat tttgcaacca tctgcagaag agcagcacca gaccgatatg tccattatat 2221 tcattgcagt gctggctggt ggttgtgctt tgctactttt ggccatcttt tttgtggcct 2281 gtacttgtaa aaagaaagct ggtgaattta agcaggtacc tgaacaacat ggaacatgca 2341 atgaagaacg cctgttaagc accccatctc cccagtcggt ctcttcttct ttgtctcagt 2401 ctgagtcatg ccaactctcc atcaatactg aatctgagaa ttgcagcgtg tcctctaacc 2461 aagagcagca tcagcaaaca ggcataaagc actccatctc tgtaccatct tatcacacat 2521 ctggttggca cctggacaat tgtgcaatga gcataagtgg acattctcac atggggcaca 2581 ttagtacaaa ggacagtggc aaaggagata gtgacttcaa tgacagtgac tctgatacta 2641 gtggagaatc acaaaagaag agcattgagc agccaatgca ggcacaagcc agtgctcaat 2701 acacagatga atcagcaggg ttccgacatg ccgataacta tttcagccac cgaatcaaca 2761 agggtccaga aaatgggaac tgcacattgc aatatgaaaa gggctataga ctgtcttact 2821 ctgtagctcc tgctcattac aatacctacc atgcaagaat gcctaacctg cacataccga 2881 accataccct tagagaccct tattaccata tcaataatcc tgttgctaat cggatgcacg 2941 cggaatatga aagagattta gtcaacagaa gtgcaacgtt atctccgcag agatcgtcta 3001 gcagatacca agaattcaat tacagtccgc agatatcaag acagcttcat ccttcagaaa 3061 ttgctacaac cttttaatca ttaggcatgc aagtgagaat gcacaaaggc aagtgcttta 3121 gcatgaaagc taaatatatg gagtctccct ttccctctga tggatggggg gagacacagg 3181 acagtcataa atatacagct gctttctatt tgcatttcac ttgggaattt tttgtttttt 3241 ttacatattt atttttcctg aattgaatgt gacattgtcc tgtcacctaa ctagcaatta 3301 aatccacaga cctacagtca aatatttgag ggcccctgaa acagcacatc agtcaggacc 3361 taaagtggcc tttttacttt tagcagctcc tgggtctgcc ctctgtgtta atcagcccct 3421 ggtcaatcct gagtaggatc atggcgtttt tatatgcatc tcacctactt tggacgtgat 3481 ttacacataa taggaaacgc ttggtttcag tgaagtctgt gttgtatata ttctgtatat 3541 atcacgcatt ttgtgtttgt gtatatattt caagtccatt cagatatgtg tatatagtgc 3601 agaccttgta aattaaatat tctgatactt tttcctcaat aaatatttaa at //