LOCUS       FI532684                 280 bp    DNA     linear   GSS 30-MAR-2009
DEFINITION  EUCE00108e11.q1k5SPK EUCOMM random gene traps Mus musculus genomic
            clone EUCE00108e11.q1k5SPK, genomic survey sequence.
ACCESSION   FI532684
VERSION     FI532684.1
DBLINK      BioSample: SAMN00188229
KEYWORDS    GSS.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 280)
  AUTHORS   European Conditional Mouse Mutagenesis Program.
  TITLE     Genomic sequences for EUCOMM gene traps
  JOURNAL   Unpublished
COMMENT     Contact: European Conditional Mouse Mutagenesis Program (EUCOMM)
            European Conditional Mouse Mutagenesis Program (EUCOMM)
            www.eucomm.org
            Email: eucomm.distributor@helmholtz-muenchen.de
            Sequences ending '5SPK' are the five-prime splinkerette sequence
            read. Sequences ending '3SPK' are the three-prime splinkerette
            sequence read. Five-prime splinkerette: Direction of sequence read
            is antisense to gene orienation. Three-prime splinkerette:
            Direction of sequence read is the same sense as the gene
            orienation.
            low quality hit means < 50% alignment quality
            medium quality hit means 50-79% alignment quality
            high quality hit means >= 80% alignment quality
            sequenceName EUCE00108e11.q1k5SPK
            dnaIsolationMethod Splinkerette
            sequencingMethod ABI
            assembly NCBIM37
            vectorSequence
            http://www.sanger.ac.uk/htgt/static/gene_trap/vector_sequence.fasta
            chromosome 12
            trapStart 52852517
            trapEnd 52852797
            matePairName EUCE00108e11.p1ka3SPK
            lowQualityHit ENSMUSG00000035247 (Hectd1)
            mediumQualityHit ENSMUSG00000035247 (Hectd1)
            highQualityHit ENSMUSG00000035247 (Hectd1)
            http://www.sanger.ac.uk/htgt/report/gene_trap_well_page?gene_trap_w
            ell=EUCE00108e11
            Class: Gene Trap.
FEATURES             Location/Qualifiers
     source          1..280
                     /organism="Mus musculus"
                     /mol_type="genomic DNA"
                     /strain="129P2 (formerly 129/OlaHsd)"
                     /db_xref="taxon:10090"
                     /clone="EUCE00108e11.q1k5SPK"
                     /sex="male"
                     /cell_line="E14Tg2a"
                     /cell_type="Embryonic Stem Cell"
                     /clone_lib="SAMN00188229 EUCOMM random gene traps"
                     /note="Random gene traps from the EUCOMM project with
                     conditional retroviral gene trap vectors."
BASE COUNT           92 a           76 c           49 g           62 t
ORIGIN      
        1 ccagcaccac aagtaataaa gtaatactgc aaacaatctg ctccaaaaac acagcttatc
       61 taacagcaca gcgtaacaga aggctagaat ttagccggac agaaataatt cagcccaact
      121 taggtaagtc acaacccatg ctctgctatc aagagaagag gaggtcaagc attctgagcc
      181 ctctgccaag gagaaaactt ctgcaaaggt cacagaaacc ctccccttgt tttcctgccn
      241 gtgtttacac agatcacctg gttcccatgc attcttttca
//