LOCUS EQ974221 179564 bp DNA linear CON 11-MAR-2015 DEFINITION Ricinus communis genomic scaffold scf_1106159292534, whole genome shotgun sequence. ACCESSION EQ974221 AASG02000000 VERSION EQ974221.1 DBLINK BioProject: PRJNA16585 BioSample: SAMN02953659 KEYWORDS WGS. SOURCE Ricinus communis (castor bean) ORGANISM Ricinus communis Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus. REFERENCE 1 (bases 1 to 179564) AUTHORS Chan,A., Puiu,D., Melake,A., Orvis,J., Zhao,Q., Wortman,J., Utterback,T., Rosovitz,M.J., Inman,J.M., Amedeo,P., Schobel,S., Galinsky,K., Fraser,C., Ravel,J. and Rabinowicz,P. TITLE Direct Submission JOURNAL Submitted (22-OCT-2008) J. Craig Venter Institute, 9704 Medical Center Dr., Rockville, MD 20850, USA COMMENT Genome coverage: 4.5x Assembly name: JCVI_RCG_1.1. FEATURES Location/Qualifiers source 1..179564 /organism="Ricinus communis" /mol_type="genomic DNA" /submitter_seqid="scf_1106159292534" /cultivar="Hale" /db_xref="taxon:3988" gap 2187..2189 /estimated_length=3 gap 4240..4677 /estimated_length=438 gene 4678..9226 /locus_tag="RCOM_0782470" mRNA join(4678..4853,5300..5712,5919..6286,7489..7725, 8537..8908,8980..9226) /locus_tag="RCOM_0782470" /product="protein phosphatase 2c, putative" /note="transcript RCOM_0782470A" CDS join(5394..5712,5919..6286,7489..7725,8537..8800) /locus_tag="RCOM_0782470" /EC_number="3.1.3.16" /note="encoded by transcript RCOM_0782470A; Gene spans sequencing gaps and may be missing exons." /codon_start=1 /product="protein phosphatase 2c, putative" /protein_id="EEF31736.1" /translation="MLSRLINFLRACWLPSSERYVHMGSDAAGRQDGLLWYKDTGQHV NGEFSMAVVQANNLLEDQSQLESGSLSTLDSGPYGTFVGIYDGHGGPETSRYINDHLF QHLKRFTSEHQSMSVDVIKKAFQATEEGFLSLVTKQWPMKPQIAAVGSCCLVGIICGG ILYIANLGDSRAVLGRLVKATGEVLAIQLSAEHNVSIESVRQEMHSMHPDDSQIVVLK HNVWRVKGLIQVSRSIGDVYLKKAEFNREPLYAKFRLREPFKKPILSSEPSISVHELQ PHDQFLIYASDGLWEHLTNQEAVDIVQNHPRNGIARRLVKAALQEAAKKREMRYSDLK KIERGVRRHFHDDITVIVVFLDSNLVSRASTAKGPSTSVRGGGVHLPAKTLAPCGAPM ETS" gap 8117..8236 /estimated_length=120 gap 13990..13992 /estimated_length=3 gene <20654..>23588 /locus_tag="RCOM_0782580" mRNA join(<20654..21277,21304..21535,22020..22240,22462..22685, 22754..>23588) /locus_tag="RCOM_0782580" /product="conserved hypothetical protein" /note="transcript RCOM_0782580A" CDS join(20654..21277,21304..21535,22020..22240,22462..22685, 22754..23588) /locus_tag="RCOM_0782580" /note="encoded by transcript RCOM_0782580A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF31737.1" /translation="MGCGLSKQNEEDDVVALCGERKRLLKLAVEKRYAFADAQFKYNQ SLYAVAMALRLFVARHSSPSSPFLLTFPSCSDTNGDTNETIPNDPMFLQQSPTQPTLE TTACQPLETKAQETQEDNDDSEEESAEESESEELCEHFYGENDPPEVPSPNGQFGWDF FYSYDEMRSEMLNGFTQIHDDDLRAVREKEGIPELEDDGEKVMNEDKNRVVEFANARG EDNNNNVGQEETKGLGVIDTPANGRELLEALKDIEDHFLRSYDSGLDISRMLEANRVP LQSGLEEIKESSNKLIRSITWNRSTSSRSSSSKSLLTSTSTNSSVWTDFKADLFDDFG MEAGSHSLTLGRLYAWEKKLYQEVKAGDKTRKIYERKCSYLRRMDATGDGFYTIDKST DEVKELHSRISVAIRSVESISERIEKLRDTELQPQLLELLHGLMRNWKMMLESHETQK QVMLEVKFFNCPAYEKFSNDCHRLATLQLEAELDNWCACFSAYVTTQKAYIEALSGWL SKFIAPEFEFYSSRKYISPPCRINGPPLLVICHEWLAWLDKLPDNAVTYAMKSFGKDI HALWSQQGKEQQQKRKVDDLAKELDRRTLAFQRAERRILTSKISEQETEASVRHNIEY LVEGKRLLNLFRNTLDEEKEKHLNSMQGTQQITVSGFQTGFSSVFESLAEFSKASVKM YVDLVTYSANAKTAEKNNGDVSYIDGIFS" gene complement(<24154..>26532) /locus_tag="RCOM_0782590" mRNA complement(join(<24154..24585,24798..25120,25203..25265, 25350..25418,25692..25895,26316..>26532)) /locus_tag="RCOM_0782590" /product="serine-threonine protein kinase, plant-type, putative" /note="transcript RCOM_0782590A" CDS complement(join(24154..24585,24798..25120,25203..25265, 25350..25418,25692..25895,26316..26532)) /locus_tag="RCOM_0782590" /note="encoded by transcript RCOM_0782590A; GO_function: GO:0004672 - protein kinase activity; GO_function: GO:0005524 - ATP binding; GO_process: GO:0006468 - protein amino acid phosphorylation" /codon_start=1 /product="serine-threonine protein kinase, plant-type, putative" /protein_id="EEF31738.1" /translation="MKKQYYFLSAEPPILVAHSPSPPQETVLVLSKHKHILGALIIVT VVLSVATSLCLFFRRKLFPYFFQRWKHKGNLKNEELSLRRFGLEELEKATKNFSEECL LGSGAFGNVYKGTFDVEGILAIKRAHNDSCQSVEEFRNGGRKAKVLVYEYVPNGSLLE YITRNRGRSLTWRQRVNIAIGAAKGIAHLHNGVTPSIIHRDIKPSNILVGSNFEAKVS DFGLVKLGPIGDQSHVSSQIKGTPGYLDPAYCSSFHLSPFSDVYSFGVILLQLVSARP AVDSSRNQSNYHIIEWARPSLDRGNVAEILDANLLTETCNMEIMLKMGKLGLRCVVQN PKNRPTMTQVWQEIEEALYLADNFIYKEPSRRSRSSSGYQQNNHGRQRLIDWESSQSF VSIDGVGFQRFRIEMDSPSFESVSLRCFEASTVSIDIDNNNLK" gap 25597..25599 /estimated_length=3 gene complement(29953..31895) /locus_tag="RCOM_0782600" mRNA complement(join(29953..30278,30393..30560,30654..30737, 30863..31041,31685..31895)) /locus_tag="RCOM_0782600" /product="RING-H2 finger protein ATL4M, putative" /note="transcript RCOM_0782600A" CDS complement(join(30156..30278,30393..30560,30654..30737, 30863..31041,31685..31838)) /locus_tag="RCOM_0782600" /note="encoded by transcript RCOM_0782600A; GO_function: GO:0005515 - protein binding; GO_function: GO:0008270 - zinc ion binding" /codon_start=1 /product="RING-H2 finger protein ATL4M, putative" /protein_id="EEF31739.1" /translation="MEFYPYPSRFSMSSLPFFGDFVEKIKEVCNFAVSAVIGNIFSAI FTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLLLWQSDE SGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFEEVQNIFDTGGAK GLTGDTVEKIPKIKITSNNTIDASGEKVACSVCLQDFQVGETVRSLPHCHHMFHLPCI DKWLLRHASCPLCRRDL" gene <33054..>33551 /locus_tag="RCOM_0782610" mRNA join(<33054..33149,33435..>33551) /locus_tag="RCOM_0782610" /product="conserved hypothetical protein" /note="transcript RCOM_0782610A" CDS join(33054..33149,33435..33551) /locus_tag="RCOM_0782610" /note="encoded by transcript RCOM_0782610A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF31740.1" /translation="MDMEKNFRGVGIVGETLPLPQCRFSDGRHVHHTEGNEGGAGACG GRHGGDLVLMVAIIVYGGDGGCHGRV" gene <46903..>47070 /locus_tag="RCOM_0782620" mRNA <46903..>47070 /locus_tag="RCOM_0782620" /product="conserved hypothetical protein" /note="transcript RCOM_0782620A" CDS 46903..47070 /locus_tag="RCOM_0782620" /note="encoded by transcript RCOM_0782620A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF31741.1" /translation="MHTVKVILVENSNRTTIQLRLNVSMGGRMECCLKDYYHVKSVVK LPREEGMSSKK" gene complement(<47469..>47705) /locus_tag="RCOM_0782630" mRNA complement(<47469..>47705) /locus_tag="RCOM_0782630" /product="conserved hypothetical protein" /note="transcript RCOM_0782630A" CDS complement(47469..47705) /locus_tag="RCOM_0782630" /note="encoded by transcript RCOM_0782630A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF31742.1" /translation="MTPLISLSNIIFAGLSDNNLSGASLELLLQSTDNLGGRIPDALG RLTNLRLFDVGSNMVSGTNPSSLFNLSLMKLLMC" gap 53779..53995 /estimated_length=217 gene 58337..64845 /locus_tag="RCOM_0782740" mRNA join(58337..58411,58547..58651,59008..59168,59313..59405, 59578..59763,59917..60078,60289..60433,60528..60670, 60745..60801,60934..61013,61133..61208,61499..61684, 62030..62097,62173..62291,62542..62663,62836..62934, 63031..63510,63920..64018,64115..64357,64460..64845) /locus_tag="RCOM_0782740" /product="aconitase, putative" /note="transcript RCOM_0782740A" CDS join(58408..58411,58547..58651,59008..59168,59313..59405, 59578..59763,59917..60078,60289..60433,60528..60670, 60745..60801,60934..61013,61133..61208,61499..61684, 62030..62097,62173..62291,62542..62663,62836..62934, 63031..63510,63920..64018,64115..64357,64460..64534) /locus_tag="RCOM_0782740" /EC_number="4.2.1.3" /note="encoded by transcript RCOM_0782740A; GO_component: GO:0005739 - mitochondrion; GO_function: GO:0016829 - lyase activity; GO_function: GO:0016836 - hydro-lyase activity; GO_process: GO:0008152 - metabolic process" /codon_start=1 /product="aconitase, putative" /protein_id="EEF31743.1" /translation="MVNESPFKSILKTLEKADGGAFGKYYSLPALNDPRIDRLPYSIR ILLESAIRNCDEFQVKSNDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPAVVDLA CMRDAMNSLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNNERFAF LKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGL GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHG VVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETV SMIESYLRANRMFVDYSEPQIERVYSSYLELNLEDVEPCIAGPKRPHDRVPLKEMKAD WHSCLDNRVGFKGFAVPKESQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVM LGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQKSGLQKYLNQLGFHIVGYGCT TCIGNSGDIDEAVASAITENDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYAL AGTVDIDFETEPIGVGKDGKKIYFRDIWPSNEEVAKVVQSNVLPDMFKATYEAITKGN PMWNHLSVPSSTLYSWDPKSTYIHEPPYFRNMTMSPPGPHGVKNAYCLLNFGDSITTD HISPAGSIHKDSPAARYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKFLGG EVGPKTVHIPSGEKLSVFDAAMRYKSEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVK AVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETFGLTGHERYNIDLPSSVAEIRPGQD VTVTTDNGKSFTCTLRFDTEVELAYFDHGGILPFVIRNLIQAKH" gap 65391..65393 /estimated_length=3 gene complement(<67356..>70213) /locus_tag="RCOM_0782750" mRNA complement(join(<67356..67429,67538..67725,67810..67939, 69089..69186,69314..69411,69860..69944,70023..>70213)) /locus_tag="RCOM_0782750" /product="prolyl 4-hydroxylase alpha subunit, putative" /note="transcript RCOM_0782750A" CDS complement(join(67356..67429,67538..67725,67810..67939, 69089..69186,69314..69411,69860..69944,70023..70213)) /locus_tag="RCOM_0782750" /EC_number="1.14.11.2" /note="encoded by transcript RCOM_0782750A; GO_component: GO:0005739 - mitochondrion; GO_function: GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" /codon_start=1 /product="prolyl 4-hydroxylase alpha subunit, putative" /protein_id="EEF31744.1" /translation="MAKARYSRLPARKSSSPTTMILTMLLMFTFVILILLALGILSVP SNSGDKAHDLTTIVHNKEQSFDGDDGKGERWAEVISWEPRAFVYHNFLTKEECEYLIN LAKPNMQKSTVVDSETGRSKDSRVRTSSGTFLSRGRDKKIRDIEKRIADFSFIPVEHG EGLQVLHYEVGQKYEPHFDYFNDEFNTKNGGQRVATLLMYLSDVEEGGETVFPAAKGN FSAVPWWNELSECGKKGLSVKPNMGDALLFWSMKPDATLDPSSLHGGCPVINGNKWSA TKWMRVNEYRV" gene complement(<73606..>75971) /locus_tag="RCOM_0782760" mRNA complement(join(<73606..73750,74831..74970,75741..>75971)) /locus_tag="RCOM_0782760" /product="conserved hypothetical protein" /note="transcript RCOM_0782760A" CDS complement(join(73606..73750,74831..74970,75741..75971)) /locus_tag="RCOM_0782760" /note="encoded by transcript RCOM_0782760A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF31745.1" /translation="MKQTKMERENGNTKSKWLIPPPPPPPPLPRFWTRKDGTESVTNQ EIAKFWRKKRTEEEGHLLAAIKAAARIRARNLTEEDYRQFEDSLKDDDDDTKDSKLDK KSNATLNKDEENKEVRIGIKDWWTKSKYAYLNQPALETMDPPRRRNSNYIPNCFSFKP TALYPASLGVF" gap 77567..78184 /estimated_length=618 gene <79625..>80156 /locus_tag="RCOM_0782870" mRNA join(<79625..79821,80018..>80156) /locus_tag="RCOM_0782870" /product="conserved hypothetical protein" /note="transcript RCOM_0782870A" CDS join(79625..79821,80018..80156) /locus_tag="RCOM_0782870" /note="encoded by transcript RCOM_0782870A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF31746.1" /translation="METEVTFLKLSTRGIQPYQDRCQIPRRHCQSGLESYGFGERRSH STSDGNTQDALDRHFWGRGVYWKARNSLLKIAKAGLVYHNESKAAVFPLKNSSPSLSQ DPFAAWKAP" gene 83022..91157 /locus_tag="RCOM_0782880" mRNA join(83022..83149,83613..83876,84358..84657,84730..84888, 85053..85214,85311..85531,85633..85774,85864..86199, 86297..86583,86784..87042,87122..90204,90328..90399, 90510..90563,90696..90843,91017..91157) /locus_tag="RCOM_0782880" /product="DNA-directed RNA polymerase II largest subunit, putative" /note="transcript RCOM_0782880A" CDS join(83066..83149,83613..83876,84358..84657,84730..84888, 85053..85214,85311..85531,85633..85774,85864..86199, 86297..86583,86784..87042,87122..90204,90328..90399, 90510..90563,90696..90840) /locus_tag="RCOM_0782880" /note="encoded by transcript RCOM_0782880A; GO_component: GO:0005634 - nucleus; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex; GO_function: GO:0003677 - DNA binding; GO_function: GO:0003899 - DNA-directed RNA polymerase activity; GO_process: GO:0006350 - transcription; GO_process: GO:0006366 - transcription from RNA polymerase II promoter" /codon_start=1 /product="DNA-directed RNA polymerase II largest subunit, putative" /protein_id="EEF31747.1" /translation="MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTER GKPKPGGLSDLRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIM RCVCFNCSKILADEEDHKFKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDT DEPVKKSRGGCGAQQPRMTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVL GVLKRISDDDCRLLGFNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQL AMIIRHNENLKKQEKGGAPAHIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKS ICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTP YNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLN DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW EDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLIRTAAWHSDSERGVITPGDTLVR IEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSI GIGDTIADAATMEKINETISNAKNAVKELIRKAQNKELEPKPGRTMMESFENEVNQVL NRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFI DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRV FKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDSS WPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVPGDDPLSVEAQ KNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAA QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLIPECNKT KERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEISPEK ISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMND EAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYA EADYLRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGLDFGMTPARS PVSVTPYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPFSPTLSPGYSPSSPGYSP SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPS YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYS PTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSP TYSPSSPYNSGVGPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTQTSTKDDRTDKGD RNGRDNKDEKSSR" gene <91768..>92427 /locus_tag="RCOM_0782890" mRNA <91768..>92427 /locus_tag="RCOM_0782890" /product="conserved hypothetical protein" /note="transcript RCOM_0782890A" CDS 91768..92427 /locus_tag="RCOM_0782890" /note="encoded by transcript RCOM_0782890A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF31748.1" /translation="MGKLQKSKSKISDLLPKAAGPVTFLSPPPSPARANSWKGLSSPR VSLIPKEIRRKARILSFDAREPTSPKVSCMGKIKNRKRNKNETKKWNNPTKLDMLVSS LSSSGAMILKIFKGKQEIEERDASDKSPTTIAERAVRASSSSQVKKFASGRGVLKDFD WKAHVAGAADAESNCPQDDKNQDKERDVETRTECISVEPRKEVNLWKKRAISPPRPLQ L" gene complement(<92974..>117591) /locus_tag="RCOM_0782900" mRNA complement(join(<92974..93279,93382..93532,93635..93872, 94033..94243,94346..94550,94669..94795,94910..96228, 104078..104379,104482..104632,104735..104972, 115726..115834,116131..116239,116353..116458, 116578..117556,117589..>117591)) /locus_tag="RCOM_0782900" /product="B-Raf proto-oncogene serine/threonine-protein kinase, putative" /note="transcript RCOM_0782900A" CDS complement(join(92974..93279,93382..93532,93635..93872, 94033..94243,94346..94550,94669..94795,94910..96228, 104078..104379,104482..104632,104735..104972, 115726..115834,116131..116239,116353..116458, 116578..117556,117589..117591)) /locus_tag="RCOM_0782900" /EC_number="2.7.10.1" /EC_number="2.7.10.2" /note="encoded by transcript RCOM_0782900A; Gene spans sequencing gaps and may be missing exons; GO_function: GO:0004672 - protein kinase activity; GO_function: GO:0004713 - protein tyrosine kinase activity; GO_function: GO:0005524 - ATP binding; GO_function: GO:0005529 - sugar binding; GO_process: GO:0006468 - protein amino acid phosphorylation" /codon_start=1 /product="B-Raf proto-oncogene serine/threonine-protein kinase, putative" /protein_id="EEF31749.1" /translation="MGNLVLYGEDSDPVWSTNASVETTGNLAQLLDSGNLVLVQRNKD KSILWQSFDHPTDTLLPGMKIGVNRKTGQNWMLKSWRSENDPGIGNYSQRVNTNGSPQ IFQYNGTAHYWRSSPWPWRVFPEVYYCNFVSNRDEIYYECSFHNTSVISRRVLDHSGI LKWLIWQENDGQWKEFLSLSRDRCYNYGRCGAYGKCDSNTVTRYECTCLPGYEPKSPR NWNLWDGKDGCVRKRKGTSSVCGHGEGFIKVENLKLPDASAAVWVDMTMSHTDCEQEC KRNCACSAYSTIFIAGNGSGCLAWYGELIDTMTYSPAGGYDLYVRVDALELGNFLEMK GILIVSVASVWFVIIIFIYCWLKTKKEKRKMKRRLFDPINGSNYYRGTMAAADELEGG SRSHQDLLQHRNLVKLLGCCVERNEQMLIYEYLANKSLDTFLFDERKRSLISWETRFN IIVGIARGILYLHQDSRLTIIHRDLKSSNILLDADMNPKISDFGMARLFKSDELQDQT NRIVGTYGYMSPEYAVFGKYSVKSDIFSFGIILLEIISGKKTNGFTQKDASLNLIGQV WELWKEERALEIVDSSLTGSCNSDEVLRCIQVGLLCVQEDAMDRPAMLEVVLMLKSDS SLPSPKQPAFIFRASSSNTNSAGGNGGSCSINGVTITAVSTRNDFVSINKNCFFKASG LIVMETKTWFSFLLILVRSIVRTASNDTISINQILKDGDLLISKEENFAFGFFGPGSS SYRYLGIWFHKIPGQTVVWVANRNNPINGSSGFLSINQQGNLVLFGENSDPVWSTNVS VEITGNTAQLLDSGNLVLVQRNKDKSILWQSFDHPTDTLLPGMKIGVNRKTGQNWMLK SWRSENDPGIGNFFYRLNPNGSPQIFLYNDTTRYWRSNPWPWRINLEVYYCSFINNQD EICYNCSLRNTSVISRQQLDHLGIMRWLVWQENDDQWKEFLSLPRDRCDDYGRCGGYG KCDSNTVTRYECACLPGYEPKSPRNWNLWDGRDGCVRKRKESSSVCGHGEGFIKVESV KLPDASAAVWVDMSTSHIDCEQQCKRNCACSAYSTIFIAGNGSGCLAWYGELIDTKTY PPDVGYDLYVRVDALELADSARRSSSSIETKRILIVSVASVWFIIILIIYCWLKKKKK KRNWNTIVLDHPINGSNYYRGTMAAADELEGGSRSHQDLVLFKLSTILVATDNFSPVN KIGQGGFGTVYKGQLSNGKEIAIKRMSKTSMQGIEELKNEVMLIAKLQHRNLVKLLGC CVERNEQMLIYEYLANKSLDTFLFDERKRSLISWETRFNIIVGIARGILYLHQDSRLT IIHRDLKSSNILLDADMNPKISDFGMARLFKSDELQDQTNRIVGTYGYMSPEYAVFGK YSVKSDIFSFGIILLEIISGKKTNGFNQKDASLNLIGQVWELWKEERALEIVDSSLTG SCNSDEVLRCIQVGLLCVQEDAVDRPIMSEVVLMLKSDSSLPSPKQPAFIFRASSSNT ISPGGNEGSCSINDVTITAVLTR" gap 105101..110309 /estimated_length=5209 gap 117609..119549 /estimated_length=1941 gap 123283..123327 /estimated_length=45 gene 132035..>138502 /locus_tag="RCOM_0783110" mRNA join(132035..133273,133607..133723,134009..134203, 134378..134677,134770..134838,134982..135129, 136244..136392,136826..136972,137913..138113, 138212..>138502) /locus_tag="RCOM_0783110" /product="phospholipase d delta, putative" /note="transcript RCOM_0783110A" CDS join(132317..133273,133607..133723,134009..134203, 134378..134677,134770..134838,134982..135129, 136244..136392,136826..136972,137913..138113, 138212..138502) /locus_tag="RCOM_0783110" /EC_number="3.1.4.4" /note="encoded by transcript RCOM_0783110A; GO_function: GO:0003824 - catalytic activity; GO_process: GO:0008152 - metabolic process" /codon_start=1 /product="phospholipase d delta, putative" /protein_id="EEF31750.1" /translation="MAEISGSNDQQPIILHGDLDLYIIEARSLPNMDLVSTRIRGCFS ACNCTKKSTSAASGGASTDEENEDQKLHHHRNIITSDPYVTVVVPQATLARTRVVKNA KNPKWKQRFFIPLAHPVTNLEFHVKDNDLFGAEVMGIVKFPASKIASGESIAGWFSII GSSGKPPKPDTALHLEMKFTPCEKNVLYRHGIAGDPEHKGVRNTYFPLRRGSRVKTYQ DAHVTDGMLPNIELDNGMVYKQEKCWEDICYAISEAHHMIYIVGWSVFYKIKLIREPT KPLPRGGDLTLGELLKYKSEEGVRVLLLIWDDKTSRDIFGYQTVGLMDTHDEETRKFF KHSSVTCVLAPRYASSKTGLLKQKVVGTAFTHHQKFVLVDTQASGNNRKVTAFLGGID LCDGRYDTPEHRLFHDLDTVFKGDFHNPTFSATLKVPRQPWHDLHCRIDGPAVYDVLI NFEQRWRKSTRWSEFGLSFKRVTHWDDALIKIERISWILSPPLAVKDGVTVVPPDDPT VHVSSEDDPENWHVQIFRSIDSGSLKGFPKNVHDCQAQNLISAKTQVIDRSIQTAYIQ AIRSAQHFIYIENQYFLGSSYAWPSYENAGADNLIPMELALKIVSKIRANERFAVYII LPMWPEGDPKTETMQEILYWQSQTMQMMYDLVAREIKSMKLVDTHPQDYLNFYCLGNR EENPQPSTNGETVSDAYKNQRFMIYVHAKGMIVDDEYAIIGSANINQRSMAGSKDTEI ALGAYQPHYTWAAKKKHPRGQIYGYRMSLWAEHLGQKLIEEPESLDCVKTVNNIAEEN WKKYTDPDFTLLQGHLLRYPLQVDADGKVGPLPGYETFPDAGGRVLGAPAIKVPDILT T" gap 140027..140265 /estimated_length=239 gene 141909..144346 /locus_tag="RCOM_0783220" mRNA join(141909..141954,142046..142065,142329..142478, 142587..142610,142727..142826,142983..143132, 143729..143798,143899..144346) /locus_tag="RCOM_0783220" /product="Arginine/serine-rich-splicing factor, putative" /note="transcript RCOM_0783220A" CDS join(141952..141954,142046..142065,142329..142478, 142587..142610,142727..142826,142983..143132, 143729..143798,143899..144128) /locus_tag="RCOM_0783220" /note="encoded by transcript RCOM_0783220A; GO_function: GO:0003676 - nucleic acid binding" /codon_start=1 /product="Arginine/serine-rich-splicing factor, putative" /protein_id="EEF31751.1" /translation="MADSPAKRNSHSVSPWREQSRSRSRSRSRSRSRSRSRSRARSLS PQPRHRSRSRSRGRSRSRSHGRTEAVNPGNTLYVTGLSTRVTERGLEEHFAKEGKVAS CFLVVEPRTRISRGFAFVTMDNVEDANRCVKYLNQSVLEGRYITVEKSRRKRPRTPTP GHYLGLKSNRDYGHRGDRGDRGRYRGRDDYHGRDDYRGRDDYRRSPRRSPYRGERAGR EYSPRRSPYGGRSRRDRSRSPYSPSYHGSR" gap 147768..147770 /estimated_length=3 gene <148522..>151796 /locus_tag="RCOM_0783230" mRNA join(<148522..149293,149475..149551,149808..149906, 150090..150188,150730..150828,150928..151026, 151701..>151796) /locus_tag="RCOM_0783230" /product="aberrant large forked product, putative" /note="transcript RCOM_0783230A" CDS join(148522..149293,149475..149551,149808..149906, 150090..150188,150730..150828,150928..151026, 151701..151796) /locus_tag="RCOM_0783230" /note="encoded by transcript RCOM_0783230A; GO_component: GO:0009507 - chloroplast" /codon_start=1 /product="aberrant large forked product, putative" /protein_id="EEF31752.1" /translation="MSLPSLLLLNPQIPKVPSPLYHFSKPSPVLLSIQILKFPRKFYS VSPSLQSSFPIQNDDYDSAVEEHVIGDCLVFEEGAFEGPYLENASSSVLDQESDPKQK TKNKNKKKKKNVIEIEAENLVPDKWREVQAEINITKKERRKIAQELEFNSRVEKKKKG LRPIRALNLEEYKAYREAKLAQLKPLVLDNPSSFQVEKEDENEEEEEKEKEKVEMSES CSERVAPKNPRWAVYGKGFDDVNEFFNSGHYEPGVKNSEGRRKLFTQEEKLLLNRKIP DVAAATSGKWLPLHSLAASGEFYLVDALLKHNVDINALNVDGLTALHKAILCKKQAIT GYLLRESANPFVLDSDGASLLHYAVQTASAPAIKLLLLYNVDINLQDNDGWTPLHVAV QARRSDIIKLLLIKGADQMLKNQDGLTPLDLCLYSGRDTKTFELIKLLKQFAKK" gene <156144..>158794 /locus_tag="RCOM_0783240" mRNA join(<156144..156339,156687..156899,156984..157045, 157132..157188,157428..157493,157585..157656, 158307..158416,158505..158596,158742..>158794) /locus_tag="RCOM_0783240" /product="conserved hypothetical protein" /note="transcript RCOM_0783240A" CDS join(156144..156339,156687..156899,156984..157045, 157132..157188,157428..157493,157585..157656, 158307..158416,158505..158596,158742..158794) /locus_tag="RCOM_0783240" /note="encoded by transcript RCOM_0783240A; GO_function: GO:0003677 - DNA binding; GO_function: GO:0004518 - nuclease activity; GO_process: GO:0006289 - nucleotide-excision repair" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF31753.1" /translation="MSNSSGFLSIQLGFERSLRLQCNRVKKSIFISCKSSSGSPFDDG RSTNIPDDHDHDFLQASLLISETALHYRMRRQGFQEETTWRLPGRWSPFSAMIRESRR DTSFVGYEFLRRFQSPTIFLKVSCDGDFLLPIIVGEFAIEKLIDALRGGDGNDDGDCP DQFQLVRNLVDRLGYEVKMVRITERVANTYFARVFLSKPGENEVVSIDARPSDAINMA HRCKAPIHVSKQIVFTDAIRISYGMGRVHDRKPTYDVTLDSAADGPDSLAEELELVRN MNSAVKEERFNDAAMWRDKLMQLRQSMHDH" gene complement(<160041..>162232) /locus_tag="RCOM_0783250" mRNA complement(join(<160041..160558,160810..161095, 161627..>162232)) /locus_tag="RCOM_0783250" /product="ammonium transporter, putative" /note="transcript RCOM_0783250A" CDS complement(join(160041..160558,160810..161095, 161627..162232)) /locus_tag="RCOM_0783250" /note="encoded by transcript RCOM_0783250A; GO_function: GO:0008519 - ammonium transmembrane transporter activity" /codon_start=1 /product="ammonium transporter, putative" /protein_id="EEF31754.1" /translation="MNYTFQENFSLPSGLRPDESSPEWNSKADNAWQLTATTMVCLQS VPGLVILYGSMVKKKWAVNSAFMAFYAFAAVLVCWVLWGHHMSFGTKISPLVGKPNVA LPQHFVLSRSKLGHVPMADYVLYQFAFAAITVILLAGSLLGRMNIYAWMLFVPLWLTF SYTVGAFSIWGGGFLEKHIIDYAGGYVIHLSSGVAGFTAAYWVGSRHSHDRQHFPPNN IIHMLGGAGFLWLGWTGFNGGSPFAAGLVASLAVVNTHLCTATSLLVWVSFDMIVYKK SSVIGAVQGMITGLVCITPGAGIVEPWAAFLMGGMSGSVTWYTMMVLHRRSAFFQSVD DTLAVFHTHAVAGLLGGILSGLFAKPSLLMMMYPQSTYGTGLFYSLTNGRHQDGLKQM VSQIEGAAFVTAWNVVLTSLICILISRIVDLRLPQDHLEIGDDAVHGEEAYALWGDGE RMPNLYRRLHPKLPSWCGA" gap 162401..162550 /estimated_length=150 gap 163731..163733 /estimated_length=3 gene complement(<167627..>167803) /locus_tag="RCOM_0783360" mRNA complement(<167627..>167803) /locus_tag="RCOM_0783360" /product="conserved hypothetical protein" /note="transcript RCOM_0783360A" CDS complement(167627..167803) /locus_tag="RCOM_0783360" /note="encoded by transcript RCOM_0783360A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF31755.1" /translation="MGQCASGRRVVKVREDWDGGVSRGRHGWITIVKEQRSRLYIVRK CVVILVCWHKYGNS" gap 174847..174917 /estimated_length=71 gap 177884..178268 /estimated_length=385 CONTIG join(complement(AASG02023371.1:1..2186),gap(3), AASG02024200.1:1..2050,gap(438),complement(AASG02018355.1:1..3439), gap(120),AASG02013762.1:1..5753,gap(3),AASG02008105.1:1..11604, gap(3),AASG02002781.1:1..28179,gap(217),AASG02008217.1:1..11395, gap(3),AASG02007771.1:1..12173,gap(618),AASG02003000.1:1..26916, gap(5209),AASG02011488.1:1..7299,gap(1941),AASG02017575.1:1..3733, gap(45),AASG02005731.1:1..16699,gap(239), complement(AASG02011255.1:1..7502),gap(3),AASG02006576.1:1..14630, gap(150),complement(AASG02036820.1:1..1180),gap(3), AASG02008386.1:1..11113,gap(71),AASG02019837.1:1..2966,gap(385), AASG02033957.1:1..1296) //