LOCUS EQ974003 358572 bp DNA linear CON 11-MAR-2015 DEFINITION Ricinus communis genomic scaffold scf_1106159294244, whole genome shotgun sequence. ACCESSION EQ974003 AASG02000000 VERSION EQ974003.1 DBLINK BioProject: PRJNA16585 BioSample: SAMN02953659 KEYWORDS WGS. SOURCE Ricinus communis (castor bean) ORGANISM Ricinus communis Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus. REFERENCE 1 (bases 1 to 358572) AUTHORS Chan,A., Puiu,D., Melake,A., Orvis,J., Zhao,Q., Wortman,J., Utterback,T., Rosovitz,M.J., Inman,J.M., Amedeo,P., Schobel,S., Galinsky,K., Fraser,C., Ravel,J. and Rabinowicz,P. TITLE Direct Submission JOURNAL Submitted (22-OCT-2008) J. Craig Venter Institute, 9704 Medical Center Dr., Rockville, MD 20850, USA COMMENT Genome coverage: 4.5x Assembly name: JCVI_RCG_1.1. FEATURES Location/Qualifiers source 1..358572 /organism="Ricinus communis" /mol_type="genomic DNA" /submitter_seqid="scf_1106159294244" /cultivar="Hale" /db_xref="taxon:3988" gene <8153..>21166 /locus_tag="RCOM_0541350" mRNA join(<8153..8497,9771..9971,10329..10412,12081..12140, 14600..14644,15293..15418,15636..16123,16417..16513, 16616..16795,16877..16966,17669..17731,17893..17967, 18201..18251,19952..20029,20329..20463,20677..20744, 20847..20920,21129..>21166) /locus_tag="RCOM_0541350" /product="suppression of tumorigenicity, putative" /note="transcript RCOM_0541350A" CDS join(8153..8497,9771..9971,10329..10412,12081..12140, 14600..14644,15293..15418,15636..16123,16417..16513, 16616..16795,16877..16966,17669..17731,17893..17967, 18201..18251,19952..20029,20329..20463,20677..20744, 20847..20920,21129..21166) /locus_tag="RCOM_0541350" /note="encoded by transcript RCOM_0541350A" /codon_start=1 /product="suppression of tumorigenicity, putative" /protein_id="EEF35808.1" /translation="MDIKEDAESQEDRSPSPYAVLQDISEEAIKMAGEALHHAYTGNQ SLQPMPPLHRRSQSEVLSQGHKRSSSFQRLKSQMQKEWRWGNNTTESYYSFNPEVLAN QKRQWYQLHSKTLDITKFKEPTSLFEHFVIVGLHPDANLEAVEDVFARRKKWEFETGK SDLVIRKNMQYREPTFPSMEPQVLFKYPPGKRLPMRLKDLGSFCFPEGVKTRLLERTP SLSELNEVVYGQEHMGRDDQAFVFSLKVADNDTLYGVCLHVTEIVQRPPGILGNMSPI QQSTGRCCRFLERLNRITQFVSEVSLSGIPLASKPHDQMNKNVGYPYKECGFDWTASA IPVDSAVALTAAAAGIISDDEVPTSSPKTSESHSPESCSASDASDLSQARDMDNNGKK NMQYFDECASLSSEARSDALERMDGSYESGQASPDIVTFNCSRSQALERLGSFDTLFS PVRSMTPEDEDDELFANREKDFDDELIMEWAKENKNELLQIVCGYHSMPLPQQGSDIV FHPLEHLQAIAYRRPPVSDLGFPENFVTLSEAAEVNADLAAAEEALTLSIWTTATICR VLSLESILALLTGVLLEKQVVVVCPNLGVLSAIVLSLIPMIRPFQWQSLFLPILPRRM LDFLDAPVPFIVGIQQKPEDWKMKTFNLVHVNVLKDQVKMCHLPALPRYKELVSELAP FHSRLSFQSSIARKHPVYRCNEVQAEAATQFLTIMRRYLESICSDLRLSAAKILSFAN LSDVDLLLPLLASAICGHTTICCSI" gap 15424..15426 /estimated_length=3 gene complement(23357..27823) /locus_tag="RCOM_0541360" mRNA complement(join(23357..23727,23857..24088,24179..24499, 24734..24985,25094..25231,25446..25553,26342..26542, 26633..26845,27007..27823)) /locus_tag="RCOM_0541360" /product="nucleotide binding protein, putative" /note="transcript RCOM_0541360A" CDS complement(join(23921..24088,24179..24499,24734..24985, 25094..25231,25446..25553,26342..26542,26633..26845, 27007..27582)) /locus_tag="RCOM_0541360" /note="encoded by transcript RCOM_0541360A" /codon_start=1 /product="nucleotide binding protein, putative" /protein_id="EEF35809.1" /translation="MENQGKELPAKEYEDEADIYDGIRAHFPLTFGKQSKSQTPLEVI HNSTRRPTATVIKNTDKSNSFPSLSSSSKEWLNSLRTSKDPNPSPAIPLPPSASNANV SIGHPRPPLLPPSDDDDDDDDGSEVMVGPPRPPPPAAAAADDDGESVMIGPPLPPPTQ NSDSEEDDEEEDEENRYRIPMSNEIVLKGHTKIVSALAIDHTGSRVLSGSYDYSVRMY DFQGMNSRLQSFRQLEPFEGHQVRTLSWSPTADRFLCITGSAQAKIYDRDGLTLGEFV KGDMYIRDLKNTKGHISGLTCGEWHPKSKETVLTSSEDGSLRIWDVNDFKSQKQVIKP KLARPGRIPVTTCAWDREGKCIAGGIGDGSIQIWNLKPGWGSRPDVHVEKAHSDDITG LKFSSDGRILLSRSFDGSLKVWDLRKLKDSLQAFEDLSNNYAQTNIAFSPDEQLFFTG TSVERESTVGGLLCFYDSEKLELVSRVGISPTCSVVQCAWHPKLNQIFATTGDKSQGG THILYDPTLSEKGALVCVARAPRKKSVDDFEVQPVIHNPHALPLFRDQPSRKRQREKI LKDPIKSHKPELPITGPGYGGRVGASKGSLLTQYLLKQGGMIKETWMEEDPREAILKY ADIAAKDPKYIAPAYAQTQPETVFEKSDSENEEK" gap 30388..30882 /estimated_length=495 gene <31825..>41122 /locus_tag="RCOM_0541470" mRNA join(<31825..31953,32125..32197,32352..32582,36787..36950, 37224..37364,37631..37690,38208..38372,39347..39403, 40095..40159,40270..40393,40702..40839,40991..>41122) /locus_tag="RCOM_0541470" /product="aromatic amino acid decarboxylase, putative" /note="transcript RCOM_0541470A" CDS join(31825..31953,32125..32197,32352..32582,36787..36950, 37224..37364,37631..37690,38208..38372,39347..39403, 40095..40159,40270..40393,40702..40839,40991..41122) /locus_tag="RCOM_0541470" /EC_number="4.1.1.28" /note="encoded by transcript RCOM_0541470A; Gene spans sequencing gaps and may be missing exons; GO_function: GO:0004837 - tyrosine decarboxylase activity; GO_function: GO:0016831 - carboxy-lyase activity; GO_process: GO:0019752 - carboxylic acid metabolic process" /codon_start=1 /product="aromatic amino acid decarboxylase, putative" /protein_id="EEF35810.1" /translation="MFREGELRPMDAEQLREHGHKMVDFIADYYKTIENFPVLSQVEP GYLRKLLPDSAPNQPESLQNVLDDVQAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEM LSAGINMVGFSWITSPAATELEMIVLDWLGKMLKLPEEFLSTGQGGGVIQGTASEAVL VALVAARDKVLRRVGKDALRKLVVYGSDQTHSALQKACQIGGIHPVNCRLLETDSSTN YALAPDLLSRAISEDISLGLIPFFLCATVGTTSSTAVDPLLALGKIAKSNGMWFHVDA AYAGSACVCPEYRCYMDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNALIQSLSTSP EFLQNKPSQTNTVVDYKDWQIPLGRRFRSLKLWMVLRLYGVEKLQCYIRNHINLAKYF EGLIAEDTRFEVVSPPIFALVCFRLLPPDNNVDHGNKLSHDLLDAVNSTGKIFISHTV LSGKYILRFAVGAPLTEERHVTAAWKVLQDEACALLETSRIS" gap 32880..33304 /estimated_length=425 gap 48211..48213 /estimated_length=3 gene 51104..>59256 /locus_tag="RCOM_0541580" mRNA join(51104..51423,51604..53852,53974..54294,54744..55439, 55583..55747,56377..56671,56976..57190,57723..58028, 58450..58513,58622..58861,59144..>59256) /locus_tag="RCOM_0541580" /product="multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative" /note="transcript RCOM_0541580A" CDS join(51753..53852,53974..54294,54744..55439,55583..55747, 56377..56671,56976..57190,57723..58028,58450..58513, 58622..58861,59144..59256) /locus_tag="RCOM_0541580" /EC_number="1.3.1.74" /note="encoded by transcript RCOM_0541580A; Gene spans sequencing gaps and may be missing exons; GO_component: GO:0016021 - integral to membrane; GO_function: GO:0005524 - ATP binding; GO_function: GO:0016887 - ATPase activity; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances; GO_process: GO:0006810 - transport" /codon_start=1 /product="multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative" /protein_id="EEF35811.1" /translation="MGFAFLLNNYNSITQSSLSVLKEFQGLPVLQLASICINLTLFLV FLFIVSARQIFVCVGRVRLLKDDHSAANSSPIRRSSADGEIPVVITISTGFKLVLVCC FYVLFLQFLVLGFDGIALIREAVNGKVVDWSIICLPAAQGLAWFVLSFSALHCKFKAS EQFPLLLRVWWFFSFLICLCTLYVDGRSFLIEGVKHLSSSVANFAATPALAFLCFVAI RGVTGIQVCRNSDLQEPLLLEEEAGCLKVTPYSDATLFSLATLSWLNPLLSSGAKRPL ELKDIPLLAPKDRAKMNYKVLNLNWEKVKAESPLKQPSLAWAILKSFWKEAACNAIFA LINTLVSYVGPYMISYFVEYLGGKETFSHEGYILAGIFFSAKLVETLTTRQWYLGVDI LGMHVRSALTAMVYRKGLKLSSLAKQSHTSGEIVNYMAVDVQRIGDYSWYLHDIWMLP LQIILALAILYKNVGIASVATLIATIISIIVTVPLAKVQEDYQDKLMTAKDDRMRKTS ECLRNMRILKLQAWEDRYRLKLEEMRNVEFRWLRKALYSQAFITFIFWSSPIFVSAVT FGTSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEED LQEDATIALPRGMTNLAIEIKDGEFCWDPSSSRLTLSGIQMKVQRGMRVAVCGMVGSG KSSFLSCILGEIPKISGEVRICGTAAYVSQSAWIQSGNIEENILFGSPMDKAKYKNVI HACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVD AHTGSELFKVLKEGQIIQAGKYDDLLQAGTDFNTLVAAHHEAIEAIDIPSHSSDDSDE SMCFDAPVAFIKKIDTTGSNVDSLAKEVQESASASDQKAIKEKKKAKRSRKKQLVQEE ERVRGRVSMKVYLSYMAAAYKGLLIPLIVLAQALFQFLQIASNWWMAWANPQTEGGPP RVYPMVLLGVYMALAFGSSWFIFVRAVLVATFGLAAAQRLFLKMLRSVFRAPMSFFDS TPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLLGIVGVMTKVTWQVLLLVVPMAI ACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLL DCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMILLVSFPHGSIDPSMAGLAVTYGLN LNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPPIIEDSRPPSSWPENGTIDLID LKVRYGENLPMVLHGVSCSFPGGTKIGIVGRTGSGKSTLIQAVFRLIEPAEGRIIIDN IDISTIGLHDLRSRLGIIPQDPTLFEGTIRGNLDPLEEHSDQEIWQALDKSQLGETVR RKEQKLDTPVLENGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDTATDNLIQKI IRTEFKNCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEY SSRSSGIPDF" gap 54377..54668 /estimated_length=292 gap 59354..59412 /estimated_length=59 gene <62170..>67433 /locus_tag="RCOM_0541790" mRNA join(<62170..62263,62352..62451,62858..62922,63086..63171, 63318..63402,63489..63559,64826..64957,65973..66088, 66172..66295,66371..66439,66833..66953,67056..67159, 67416..>67433) /locus_tag="RCOM_0541790" /product="NADH-ubiquinone oxidoreductase 39 kD subunit, putative" /note="transcript RCOM_0541790A" CDS join(62170..62263,62352..62451,62858..62922,63086..63171, 63318..63402,63489..63559,64826..64957,65973..66088, 66172..66295,66371..66439,66833..66953,67056..67159, 67416..67433) /locus_tag="RCOM_0541790" /EC_number="1.6.99.3" /note="encoded by transcript RCOM_0541790A; GO_component: GO:0005739 - mitochondrion; GO_function: GO:0003824 - catalytic activity; GO_function: GO:0003854 - 3-beta-hydroxy-delta5-steroid dehydrogenase activity; GO_function: GO:0016564 - transcription repressor activity; GO_function: GO:0050662 - coenzyme binding; GO_process: GO:0006694 - steroid biosynthetic process; GO_process: GO:0006808 - regulation of nitrogen utilization; GO_process: GO:0044237 - cellular metabolic process" /codon_start=1 /product="NADH-ubiquinone oxidoreductase 39 kD subunit, putative" /protein_id="EEF35812.1" /translation="MQSISRRLGHKVVNSDGSIACLKSIYPLSHHYNGGGDQSRYVST LTPKGVAHLVRKGTGGRSSVSGIVATVFGATGFLGRYVVQRLAKMGSQVLVPFRGSED SHRHLKLMGDLGQIVPMKYNPRDEASIKAVMAKANVVINLIGREYETRNYSFEEVNHG MAEQLAMIAKEHGGIMRYIQVSCLGSSSSSPSRMLRAKAAAEEAVLREIPEATVMKPA AMIGTEDRILNKWAHFVKKYSFLPLFGDGSTKLQPVYVVDVAAAIIAALKDDGSSMGK IYELGGPEILTVHELAEIMFDMIREWPRYVKVPFPIAKAIATPREVLINKVPFPLPTP NIFNLDEIIALTMDTVVSENALTFHDLGIMPHKLKGYPVEYLISYRKGGPQFGSTGFS VY" gap 68178..68291 /estimated_length=114 gap 72551..72553 /estimated_length=3 gene <74770..>75207 /locus_tag="RCOM_0541900" mRNA <74770..>75207 /locus_tag="RCOM_0541900" /product="hypothetical protein" /note="transcript RCOM_0541900A" CDS 74770..75207 /locus_tag="RCOM_0541900" /note="encoded by transcript RCOM_0541900A" /codon_start=1 /product="hypothetical protein" /protein_id="EEF35813.1" /translation="MRRRSAASVPFEQMDKGTGKNQQNRLCLLASLSAFFWILLLYFH FAVLGSSNNVDESVKLESHPLNTESKTPSFVTDARLENAPSKNTPLVDASSKNTPSSS SSGKKAENFQFMRALRTIENKTDPCGGKYIYVHDLPPRSMKIC" gap 75211..75258 /estimated_length=48 gene <75283..>76575 /locus_tag="RCOM_0541910" mRNA <75283..>76575 /locus_tag="RCOM_0541910" /product="Xyloglucan galactosyltransferase KATAMARI1, putative" /note="transcript RCOM_0541910A" CDS 75283..76575 /locus_tag="RCOM_0541910" /note="encoded by transcript RCOM_0541910A; GO_component: GO:0016020 - membrane; GO_function: GO:0003824 - catalytic activity" /codon_start=1 /product="Xyloglucan galactosyltransferase KATAMARI1, putative" /protein_id="EEF35814.1" /translation="MCKFTSNAGMGPPLENVEGVFSNTGWYATNQFAVDVIFSNRMKQ YECLTNDSSLAAAIFVPFYAGFDIARYLWGYNISTRDAASLDLVNWLMKRPEWGIMGG RDHFLVAGRITWDFRRLTDEEGDWGNKLLFLPAAKNMSMLVVESSPWNANDFGIPYPT YFHPAKDDDVFIWQQRMRNLERKWLFSFAGAPRPDNPKSIRGQIIEQCKKSKVGKLLE CDFGESKCHSPSSIMQMFQSSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYTQ YTWHLPKDYTTYSVFIPEDDIRKRNVSIEECLSQISPEQVKIMRENVINLIPRLIYAD PRSKLETLKDAFDVAVQAVIDKVTRLRRNIIEGRTEYDNFVEENSWKYALLDEGQREV GGHEWDPFFSKPKDGNVESGGSSAEAAKNSWKNEQRDQ" gap 78394..79646 /estimated_length=1253 gene <81522..>83831 /locus_tag="RCOM_0542020" mRNA <81522..>83831 /locus_tag="RCOM_0542020" /product="Cucumisin precursor, putative" /note="transcript RCOM_0542020A" CDS 81522..83831 /locus_tag="RCOM_0542020" /EC_number="1.3.1.74" /note="encoded by transcript RCOM_0542020A; GO_function: GO:0004289 - subtilase activity; GO_function: GO:0008233 - peptidase activity; GO_function: GO:0042802 - identical protein binding; GO_process: GO:0006508 - proteolysis; GO_process: GO:0043086 - negative regulation of catalytic activity" /codon_start=1 /product="Cucumisin precursor, putative" /protein_id="EEF35815.1" /translation="MEAKTHLFFSALLLNLIFLHADATLQTYIVQLHPQGVTGSSFSS KFHWHLSFLEQTVSSEEDFSSRLLYSYNSAMEGFAAQLSESEVELLQKLPDVIAIRPD RRLQVHTTYSYKFLGLNPTSNQDSWYKSRFGRGTIIGVLDTGVWPESPSFNDQGMPPV PKKWRGICQEGQDFSSSNCNRKLIGARFFTKGHRVASISLSSNMYQEYVSPRDSHGHG THTSSTAGGASVPMASVLGNGAGIARGMAPGAHIAVYKVCWLNGCYSSDILAAMDVAI RDGVDVLSLSLGGFPLPLFADSIAIGSFRAIEHGISVICAAGNNGPLQNSVANEAPWI ATIGASTLDRKFPAIVQLGNGQYLYGESMYPGNQLSNTVKELELVYVTDEDTGSEFCF RGSLPKKKVSGKMVVCDRGVNGRAEKGQAVKESGGAAMILANTEINLEEDSVDVHVLP ATLIGFEEAMRLKAYINSTSKPKARIIFGGTVIGKSRAPAVAQFSARGPSLTNPSILK PDVIAPGVNIIAAWPQNLGPTGLPDDPRRVNFTVMSGTSMACPHVSGIAALIRSAHSG WTPAAVKSAIMTTADVTDHSGHPIMDGNKPAGPFAIGAGHVNPARAINPGLIYDIRPD EYVTHLCTLGYTRSEIFMITHRNVSCDELLQMNKGFSLNYPSISVMFKHGTTSKTIKR RLTNVGSPNSIYSVEVRAPEGVQVRVKPQRLVFKHINQTLSYRVWFITRKTMRKDKVS FAQGHLTWGHSHNHLYRVRSPISVTWKYK" gene complement(<84622..>86053) /locus_tag="RCOM_0542030" mRNA complement(join(<84622..85085,85981..>86053)) /locus_tag="RCOM_0542030" /product="Photosystem II reaction center W protein, putative" /note="transcript RCOM_0542030A" CDS complement(join(84622..85085,85981..86053)) /locus_tag="RCOM_0542030" /note="encoded by transcript RCOM_0542030A; GO_component: GO:0009535 - chloroplast thylakoid membrane; GO_component: GO:0009539 - photosystem II reaction center; GO_component: GO:0009654 - oxygen evolving complex; GO_component: GO:0016020 - membrane; GO_process: GO:0015979 - photosynthesis" /codon_start=1 /product="Photosystem II reaction center W protein, putative" /protein_id="EEF35816.1" /translation="MATLQSLAFASPVSHYSHQTRSFPGSFCWAVHRIARSPFSGKSL RLSHPQLTSTRQKSSRFITMMAKPSIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFD EPSVFDSSAELGDITGFYMIDEEGVLQSVDVSAKFVNGKPARIEAKYVMRSPREWDRF MRFMERYANANGLQFVKS" gene <87719..>91092 /locus_tag="RCOM_0542040" mRNA join(<87719..87906,88017..88125,88594..88884,88965..89379, 89471..89737,90680..>91092) /locus_tag="RCOM_0542040" /product="conserved hypothetical protein" /note="transcript RCOM_0542040A" CDS join(87719..87906,88017..88125,88594..88884,88965..89379, 89471..89737,90680..91092) /locus_tag="RCOM_0542040" /note="encoded by transcript RCOM_0542040A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35817.1" /translation="MREMGEDHEGGIARRLWLKWQREGLYAQYSPFFVSLASGNLDSH SFLLSVSQDLHFFHSFSHAYELAEDCADDDEDKSLIRKLRKRVKANLKNYHSIVREWG FELPAENTPIIATIKYTEFLLATASGKVEAEKDPGKIATPFERIKLAAYTLGAMAPCM RLHASICKEIHCLLDPDDSSHIYRKWVDNYCSKSFEESALQIEEVLDRLSISLTSEEL EVLEKLYLQAMKLKVDFHCTQPIVQQTIVPLSRVQSPVDSYITIFCDFDMTCTAVDSS AILAEIALLTAAKVDLTGSKTKLTRMSSADLRSTWGVLSAQYVEEHDRCIESIMPSEA VEKFNYGGLCEALEQLTEFEKRANSRVIQSEVLKGLSLEDIKRAGQQIVFQEGCKGFF QKIIRDENLKTDVHVLSYCWCGDLIRSAFSSGDLNVLQVHSNELVYEENISTGEIIRM VECPMEKLQAFNDMLKEQNLDVQQLTIYIGGSVGDLLCLLKADIGIVIGSSPSLKRLG DHFGISFVPLFSGVLKRQKELGEGVSPNWKAPPGVLYTVSSWAEIHAFILGL" gene complement(<92309..>92643) /locus_tag="RCOM_0542050" mRNA complement(join(<92309..92527,92584..>92643)) /locus_tag="RCOM_0542050" /product="conserved hypothetical protein" /note="transcript RCOM_0542050A" CDS complement(join(92309..92527,92584..92643)) /locus_tag="RCOM_0542050" /note="encoded by transcript RCOM_0542050A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35818.1" /translation="MAQICSTMVCTKDEEESRLMLLCGVDRGLVGCFDVVGVPLSFGS AIRIQNAKIGAQTLGWVNNKEEFTSVKFSSDENANASNWFDVKSVWSN" gap 95323..100263 /estimated_length=4941 gene complement(<100893..104470) /locus_tag="RCOM_0542160" mRNA complement(join(<100893..100968,101567..101702, 102228..102547,104013..104470)) /locus_tag="RCOM_0542160" /product="Auxin-responsive protein IAA13, putative" /note="transcript RCOM_0542160A" CDS complement(join(100893..100968,101567..101702, 102228..102547,104013..104383)) /locus_tag="RCOM_0542160" /note="encoded by transcript RCOM_0542160A; GO_component: GO:0005634 - nucleus; GO_function: GO:0003700 - transcription factor activity; GO_process: GO:0045449 - regulation of transcription" /codon_start=1 /product="Auxin-responsive protein IAA13, putative" /protein_id="EEF35819.1" /translation="MRSGGFGGGGSSSGSMSTVSREDNATAMSSEDSSSPDESELELG LGLSLGGGGGFKNQHIVKGTHNFNHYARILTAKDLPCSHVSSTTSSSSSSTTLSRGNG STAGTKRSADSVSAAPPNAASSQVVGWPPIRAYRMNSMVNQAKSMAADEFNSVVGGNK GNNTLVEKTKNGSNMNNSISKARTSLFVKVNMDGIPIGRKVDLSAHGCYEALAQTLED MFLQPTPTINALRPSATEHNIMADGTRRPTLLDGSSEFVLTYEDKEGDWMLVGDVPWG MFLGSVKRLRIMRTSEATGLGKQT" gap 104540..104542 /estimated_length=3 gap 110341..110343 /estimated_length=3 gene complement(112183..115437) /locus_tag="RCOM_0542170" mRNA complement(join(112183..112698,113303..113490, 114968..115102,115384..115437)) /locus_tag="RCOM_0542170" /product="conserved hypothetical protein" /note="transcript RCOM_0542170A" CDS complement(join(112664..112698,113303..113490, 114968..115102,115384..115436)) /locus_tag="RCOM_0542170" /note="encoded by transcript RCOM_0542170A; Gene spans sequencing gaps and may be missing exons; GO_component: GO:0005739 - mitochondrion" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35820.1" /translation="MLGRRFFFRKSSASQLPSITRPLDEEKSSSFGRKAVSFLLITVT GGVALSALDDLAIYRGCSSKAMEKASKNQAIKDAIGEPVVKGPWYNASLAVAHKRQSV SCTFPVSGPHGNGVFQLKAVRNGDDNWFSYFLSP" gap 112709..113206 /estimated_length=498 gene complement(<116682..>119335) /locus_tag="RCOM_0542280" mRNA complement(join(<116682..118285,119224..>119335)) /locus_tag="RCOM_0542280" /product="conserved hypothetical protein" /note="transcript RCOM_0542280A" CDS complement(join(116682..118285,119224..119335)) /locus_tag="RCOM_0542280" /note="encoded by transcript RCOM_0542280A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35821.1" /translation="MFEIFGCKCFHWKRIDNLLPSEPDTYSLPASLPDWPPGQGFASG RISLGEIEVIKISRLEFIWTCKLPQDEKKGVSFYKPAAVPDGFNSLGHQCQINNQPLR SFLLVAREVAITKTEAAIFSSPVNSPALRKPIDYILVWSSYSFNDESYDGCGFFWLPQ PPDGYKPLGYLVTNNPDKPDLDEVRCVRADLTDGCQAYRPILNVYSKFSSFPFEVWST RPSHRGMIGKGVSVGTFFCGSYCTSGEELNIACLRNANPELHSMPNLEQIHALINHYG PTVFFHPDEVYLPSSVSWFFKNGALLYRAGNLTGESIDASGSNFPAGGTNDRAFWIDL PSDDHRDTVKHGNLESAKLYVHVKPAYGGTFTDLAMWVFCPFNGPGTLKVGPLSFPFS KIGQHVGDWEHFTLRICNFSGELWSMYFSQHSGGQWIEAYNLEYIEGNKPIVYSSKNG HASYPHPGTYIQGSAKLWIGIRNDAARSNLFVDSSTHYEIIAGEYIAGDIIEPGWLQY MREWGPTIVYNSRNELDKIFNRLPVMLRYSVENIFYKLPVELYGEEGPTGPKEKNNWV GDERG" gap 118439..118441 /estimated_length=3 gap 121256..121258 /estimated_length=3 gene <122384..124096 /locus_tag="RCOM_0542290" mRNA join(<122384..123199,123489..123661,123762..124096) /locus_tag="RCOM_0542290" /product="conserved hypothetical protein" /note="transcript RCOM_0542290A" CDS join(122384..123199,123489..123661,123762..123894) /locus_tag="RCOM_0542290" /note="encoded by transcript RCOM_0542290A; GO_component: GO:0005739 - mitochondrion" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35822.1" /translation="MLLRSSSTPVLGSLLSSFSDSPNNNNNNHHHQSLNKSPFHHHHI GCVNQITINSCSSSPISPSIAEFSDYNSRRGLRRAHSEGNLEELAFSSCNSNSNADCP ISSQPKKISGRQKCLMLETIPSFSLCNLRSRFEEEEEGYDDGGSDMVDEEESMQVAEN SGLSTKMGNMVLSSEQLGLVMERSWNMGFEEERGLISEEMHLARGLGIDGGTSDRNGT GNFGGGGGGGRDEFHWTDGDGGDMQGTEEYYKKMLQENPGNPLFLRNYAQFLYQTKRD LQRAEEYYSRAILADPKDGDILSQYAKLVWELHHDLDKASSYFKRAVQASPEDSHVHA AYASFLWETEEDEDESVVPRDFDAMPPHFYEGLMASTSA" gene complement(124098..129167) /locus_tag="RCOM_0542300" mRNA complement(join(124098..124704,125275..125356, 125941..126009,126094..126215,126569..126746, 127090..127352,127820..128171,128576..128710, 128825..129167)) /locus_tag="RCOM_0542300" /product="Ras-GTPase-activating protein-binding protein, putative" /note="transcript RCOM_0542300A" CDS complement(join(124547..124704,125275..125356, 125941..126009,126094..126215,126569..126746, 127090..127352,127820..128171,128576..128710, 128825..128863)) /locus_tag="RCOM_0542300" /note="encoded by transcript RCOM_0542300A; GO_component: GO:0005622 - intracellular; GO_function: GO:0003676 - nucleic acid binding; GO_function: GO:0003723 - RNA binding; GO_process: GO:0006810 - transport" /codon_start=1 /product="Ras-GTPase-activating protein-binding protein, putative" /protein_id="EEF35823.1" /translation="MGSPYPGPVSAVQVGSYFVGQYYQVLQQHPDLVHQFYADGSSMI RVDGDSTDSASSMLQIHTLVMSLNFTAIEIKTINSLESWNGGVMVMVSGSVKNKDFSG RRKFVQSFFLAPQEKGYFVLNDIFQFIDEEIIYQQHQTPISSENVYQQHSAPISSEDI HDTQLNSSSTLPEPPVSDYVLEEEAREYVNSVHIEDDPVDKYSLPEQQQQQDFETEIV VEEAPVEETPASFQGAVTIVQDPTPTAAALEEPTEEAPKKTWASILRVSKGPSSVVTQ PPVNKSPPATSDWNHIQESTSQQPDSGLSYVPESGFETTDNLGVDEGEPKSVYVRNLP SDITAAEIEEEFRNFGRIKPDGVFIRNRKDVIGVCYAFVEFEDLTSVQNAIQASPIQL AGRQVYIEERRPNSGIASRGGGRGGRGRGRGGYQADAPRGRFGSRSSSGRGTNQDAGD YTRARGNGFYQRTTR" gene complement(<131326..142391) /locus_tag="RCOM_0542310" mRNA complement(join(<131326..131433,132427..132540, 133642..133944,134946..135095,135191..135271, 136116..136232,136346..136498,137305..137448, 137937..138306,138705..138872,139481..139710, 140200..140309,141267..141743,142256..142391)) /locus_tag="RCOM_0542310" /product="Pre-mRNA-processing protein prp39, putative" /note="transcript RCOM_0542310A" CDS complement(join(131326..131433,132427..132540, 133642..133944,134946..135095,135191..135271, 136116..136232,136346..136498,137305..137448, 137937..138306,138705..138872,139481..139710, 140200..140309,141267..141708)) /locus_tag="RCOM_0542310" /note="encoded by transcript RCOM_0542310A; GO_component: GO:0005622 - intracellular" /codon_start=1 /product="Pre-mRNA-processing protein prp39, putative" /protein_id="EEF35824.1" /translation="MGDSEMIVAETSTVTEYASTGYTTTAGYGGDTASNVVPDSSVYS TEGTGGFSSSADAAYTMPAYADPSSAVQGIHANAAYETKPDIGMGTTSENAAATQAPP LAAGYNSSINGNIGIEAGITSAENGIAADMGGEGAAAGQQFADGSVTPMSGEEERLWS ILKANSLDFDAWTALIDETEKVAGDKILKIRKVYDAFLAEFPLCYGYWKKYADHEART GYMDKIVEVYERAVLGVTYSVDMWLHYCIFTINTYEDPDTIRRLFERGLAYVGTDYLS YPLWDKYIEYEEMHAEWSRVAMIYTRILEIPNKRLDDFFNRFKAFAASHALSELRTAE EAAAATVLPVSSVGGDQANEGEVHPDAAEQSSKPASAGLTEAEELEKYIAVREEIYKK AKEFDSKICDFETGIRRPYFHVRPLNVAELENWHNYLDFLEREDDLNKVVKLFERCLI ACANYPEYWIRYTLCMEASGSMDLASNALARATQVFVKRRPEIHLFAARFREQNGDVP GARAAYQLVHTEIAPGLFEAVVKHANMEHRLGNLKDACSLYEQAIAIEKGKEHSQVLP MLYAQYTRFLYLVSGNINKAREILVEALENVQLSKPLLEAFIHIESIQSLPKRIDYLD SLVDKFVMPNSDSLSAASATDREELSCIFLEFLGMFGDAQSIKKADDRHAKLFLPHRS KSEFKKRHADDYLTSDKSKIAKAYGDAPSPVQSLMGAYPSTQNQWAAGYGVQPQAWPP ATQAQMQQWTPGYGQQAAYSTYGSYASSYTTPQAPTSAAQTATYGAYPPTYPAQQTFP QQSYAQPAATATMAPAQQAASVSQPYYGSYY" gene complement(<146446..>147558) /locus_tag="RCOM_0542320" mRNA complement(join(<146446..146717,146982..147083, 147188..147313,147443..147498,147542..>147558)) /locus_tag="RCOM_0542320" /product="conserved hypothetical protein" /note="transcript RCOM_0542320A" CDS complement(join(146446..146717,146982..147083, 147188..147313,147443..147498,147542..147558)) /locus_tag="RCOM_0542320" /note="encoded by transcript RCOM_0542320A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35825.1" /translation="MEILLMHTAREVGHLNSKKRKKPKMYPRVRVRKQEQQEEEEEYE LSPPKENGALLFLKIIESLALQEKENQSLSPPAASITRTTKPNVSGLATPPVSASKAN DGIIGTRSKVNKSGRSSGLRKCNSEPKKPTQIQDIASQAKTERHMAIGNIRKGSKPLS SAACSFSNNKKRALSSRIGGSNPKNILEQQ" gap 152396..152398 /estimated_length=3 gene <153129..>155179 /locus_tag="RCOM_0542330" mRNA join(<153129..153899,153959..>155179) /locus_tag="RCOM_0542330" /product="serine-threonine protein kinase, plant-type, putative" /note="transcript RCOM_0542330A" CDS join(153129..153899,153959..155179) /locus_tag="RCOM_0542330" /EC_number="2.7.12.2" /note="encoded by transcript RCOM_0542330A; GO_function: GO:0004672 - protein kinase activity; GO_function: GO:0004713 - protein tyrosine kinase activity; GO_function: GO:0005524 - ATP binding; GO_function: GO:0005529 - sugar binding; GO_process: GO:0006468 - protein amino acid phosphorylation" /codon_start=1 /product="serine-threonine protein kinase, plant-type, putative" /protein_id="EEF35826.1" /translation="MDILNSLFVLSITALVASPHFSSSATSDSALNEGSSLSVENPQD ILVSKTGVFSAGFYPVGDNAYCFAVWFSKPSCSRSSTSSSCTVVWTANRDYPVNGKRS KLRLQQNGNLVLTDADKSIAWSVKTASLLSTELTLYDSGNLVLHTVKGAVLWQSFGSP ADTLLPLQQFNKDMQLVSSRSRTNLSSGFYKLFFNNDNLLRLLYDSPEVSSIYWPKPW LVSWATGRFSYNRSRLAFLDTLGKFTSSDKFSFLSRDYGGXXLNGYVSPDYDGDFYVK VPKNGFFSDKEDNSGFGLNCSSDIVRPLYRTYPERLENRTLQLLFWFAFGLGGVEIFC ILLVWCFLISSHKDSNDASQGYQQVAITGFKRFTYSELKQATQNFSSEVGRGAGGTVY RGKLPDNRIAAIKRLNIADQGEAEFLAEVSTLGKLNHMNLIDSWGYCAEKKHRLLVYE YMEHGSLADNLFSNALDWRKRFEIALGTARGLAYLHEECLEWVLHCDVKPPNILLDSN YNPKVSDFGLSKLLKRSGHDDSNISSFSRIRGTRGYMAPEWVLNMRITSKVDVYSYGI VVLEMVTGKCSPAMGVSSNGGEEKEQRGLVTWVRDKKNNGGESWIEEIVDPMLEGEND RVEMETLVTLALQCVEEDSDARPTMSKVVQILLHHQNYL" gap 153963..153965 /estimated_length=3 gene <161855..>162166 /locus_tag="RCOM_0542340" mRNA <161855..>162166 /locus_tag="RCOM_0542340" /product="conserved hypothetical protein" /note="transcript RCOM_0542340A" CDS 161855..162166 /locus_tag="RCOM_0542340" /note="encoded by transcript RCOM_0542340A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35827.1" /translation="MASQSRRGGVSLPARRSSKAQPEPTFLAKLTNSEIVAKGKRAAS DTVFVTKKLLRSTGKAAWIAGTTFLILVVPLIIEMDREQQFNELELQQQSLLGAPTPP K" gene complement(166613..>168904) /locus_tag="RCOM_0542350" mRNA complement(join(166613..167045,168151..>168904)) /locus_tag="RCOM_0542350" /product="DUF26 domain-containing protein 2 precursor, putative" /note="transcript RCOM_0542350A" CDS complement(join(166900..167045,168151..168904)) /locus_tag="RCOM_0542350" /note="encoded by transcript RCOM_0542350A; GO_component: GO:0012505 - endomembrane system" /codon_start=1 /product="DUF26 domain-containing protein 2 precursor, putative" /protein_id="EEF35828.1" /translation="MGLPETKRTTLSVLSLPLPLITIFGIFVISATAADYTNLIFKGC ARQKFQDPSGIYSQNLNNLLQSLVSQSSQKSFSSTTSGDGQNAIAGLYQCRGDLTTTQ CYTCVSKIPEMVKKNCGEVIAVRIQLSGCYLRYEISGFKQASETELLYKICGSTQASG TGFEEMRNSALDAMIDGVKNGFYTGNYQTVFVLGQCEGDLSSGDCGNCLKSAVESMKD QCGDSTSGQVYLHKCFISYSYYPNGVPTINPASEVAGSKDHTQRTVAIAVGGVAALGF LVVCLLFAKSMLKKRKAKYEGWN" gap 172785..173522 /estimated_length=738 gap 176646..177476 /estimated_length=831 gap 193475..193789 /estimated_length=315 gene <196352..>202458 /locus_tag="RCOM_0542660" mRNA join(<196352..196534,196657..197170,197413..198575, 198818..199092,199311..199377,199486..199536, 200937..201033,201715..201780,201939..201994, 202432..>202458) /locus_tag="RCOM_0542660" /product="set domain protein, putative" /note="transcript RCOM_0542660A" CDS join(196352..196534,196657..197170,197413..198575, 198818..199092,199311..199377,199486..199536, 200937..201033,201715..201780,201939..201994, 202432..202458) /locus_tag="RCOM_0542660" /EC_number="2.1.1.43" /note="encoded by transcript RCOM_0542660A; GO_component: GO:0005634 - nucleus; GO_function: GO:0008270 - zinc ion binding; GO_function: GO:0018024 - histone-lysine N-methyltransferase activity; GO_process: GO:0016568 - chromatin modification" /codon_start=1 /product="set domain protein, putative" /protein_id="EEF35829.1" /translation="MAPNPRVVSAFRAMKAIGINEDKVKPVLKKLLKLYDKNWELIEE ENYRVLADAIFDDDDSKGPNFGEEAEVHDEPEQPLKRLRSRGQEEQASASPNNCNLIA GGPPLKKPKVEEEAVRGTNSLQRSPDMRKSQHGSVSTQNHYSQSPQVRHSYKGKEPML PHVASEEKRPSVERPSHAVQIRDPVVDRGKQKMPESYALIKPKDEPFTDDLPPTDLEA PLAMIQPPLAMIQPDSTVMSLSQGKPDDQESPASHSGAEENGCDSLRASSSEKRINSE LAAVQDGSPANLEVASSSLGEVKISLSCDSMLGRPNFHMPSQDEFLKSMQEKCLRSYK ILDPNFSVLQMLKDMCECFLELGTDSSHESQERLMNVTTTVDVLKKSAACCGLGNGSI DARSCTEVSVHQIARQLQSFTEGTHTSANGSVEIDRGHELRDPKSHSLVVVPQHQLTS EEIRSIHDCNDITKGEELVEISWLNEINNECPSSFNYIPENLIFQDAHVKFTLSQIIA EDCCSTCIGDCLSSTTVCVCAAETGDKFAYTSEGLLREDFLEDCISMTRDPHRQCLSY CKACPLERSKNEEILEPCKGHLKRKHIKECWRKCACHRLCGNRVVQRGMVCKLQVFFT PEGKGWGLRTLEKLPKGTFVCEYVGEILTNKELHERNMQRIRGATSDFHTYPVLLDAY WCLKGAVKNEEALCLDATFYGNVARFINHRCLDANLIEIPVKMETPDHHYYHLAFFTT RDVDAMEELTWDYGIDFNDNDHPVEVFRCLCGSKFCRNMKRSNMYICLSVGDARFFIA GVKIPLTDEANIPGETCMVVALWIWIGLSLHQDD" gene complement(<203716..>203919) /locus_tag="RCOM_0542670" mRNA complement(<203716..>203919) /locus_tag="RCOM_0542670" /product="conserved hypothetical protein" /note="transcript RCOM_0542670A" CDS complement(203716..203919) /locus_tag="RCOM_0542670" /note="encoded by transcript RCOM_0542670A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35830.1" /translation="MKAGEDGAKEEARVHVLKLVEAGETLETYAKISEEGVILYTLSS KKTAQLRQEFSWRSWICQAPEGK" gene complement(<204007..>204397) /locus_tag="RCOM_0542680" mRNA complement(join(<204007..204206,204238..>204397)) /locus_tag="RCOM_0542680" /product="hypothetical protein" /note="transcript RCOM_0542680A" CDS complement(join(204007..204206,204238..204397)) /locus_tag="RCOM_0542680" /note="encoded by transcript RCOM_0542680A" /codon_start=1 /product="hypothetical protein" /protein_id="EEF35831.1" /translation="MIVEYEDYAHEKFQNSLHVLEKALESGSKKFKVLDSLAIVTFFA ANNVEETEKAYDKLASGISARSFLLSTIEGWKINHKHWQGAISYMSNLLDEDDDCIYV AAAEALALTFETDCILN" gap 205915..206439 /estimated_length=525 gene complement(<209111..>211703) /locus_tag="RCOM_0542790" mRNA complement(join(<209111..209407,210554..210803, 210943..>211703)) /locus_tag="RCOM_0542790" /product="glutathione transferase, putative" /note="transcript RCOM_0542790A" CDS complement(join(209111..209407,210554..210803, 210943..211703)) /locus_tag="RCOM_0542790" /note="encoded by transcript RCOM_0542790A; GO_component: GO:0009507 - chloroplast" /codon_start=1 /product="glutathione transferase, putative" /protein_id="EEF35832.1" /translation="MYCTSLPSSHYPTPTVPTKSNRKCHTFPKMSLDQTPPPNPKTLI TTLTNLLWGQSLPPGLLISTVRTTWNSAWQLMMSQLAPSDSSGSYSRPTSKFRISRNP NFQSFHLYVGLPCPWAHRTLIVRALKGLEHAIPVSIAAPGQDGSWVFDSGQNMDKDTL VPGKDSANGCKSLKEVYGLRQGGYNGRATVPMLWDSERKEVLCNESYDIIEFFNSGLN GLARNPDLDLAPKFLKGKIEEWNQVIYPNVNNGVYRCGFAQSQAAYDRAVNDLFSTLD RVENHLGSSRYLCGDTITLADVCLFTTLIRFDLAYNVLFKCTKKKLLEYPNLHGYMCD IYQFINLLFVPFKLKSLLLLQLCYTYSVSVCICFPKQIPKVAETCNFSAIMDGYYKVL FPLNPGSIRPVIPSGCEHEFLSAPHNRESLLSSVDKTMQVFVS" gap 212677..212718 /estimated_length=42 gene <213401..>214810 /locus_tag="RCOM_0542800" mRNA join(<213401..213413,213513..213797,214362..214403, 214728..>214810) /locus_tag="RCOM_0542800" /product="60S ribosomal protein L23, putative" /note="transcript RCOM_0542800A" CDS join(213401..213413,213513..213797,214362..214403, 214728..214810) /locus_tag="RCOM_0542800" /note="encoded by transcript RCOM_0542800A; GO_component: GO:0005622 - intracellular; GO_component: GO:0005840 - ribosome; GO_function: GO:0003735 - structural constituent of ribosome; GO_process: GO:0006412 - translation" /codon_start=1 /product="60S ribosomal protein L23, putative" /protein_id="EEF35833.1" /translation="MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKG IKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA GVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV" gene <216949..>221003 /locus_tag="RCOM_0542810" mRNA join(<216949..217116,217581..217679,217760..218241, 219026..219272,220144..220244,220583..220651, 220751..220791,220990..>221003) /locus_tag="RCOM_0542810" /product="hypothetical protein" /note="transcript RCOM_0542810A" CDS join(216949..217116,217581..217679,217760..218241, 219026..219272,220144..220244,220583..220651, 220751..220791,220990..221003) /locus_tag="RCOM_0542810" /note="encoded by transcript RCOM_0542810A" /codon_start=1 /product="hypothetical protein" /protein_id="EEF35834.1" /translation="MSWNYPEISLQELMKLIKGFVDIIILASGYQSSGLLAHWDPHNI KKAFQWASFFEHVLGQMSSSDVYQDSVKELDVALGKMTSSPSFPQGLADISFRTLNRA RSFVLAHMFHTLPLRDSHLRAFLTAIIEMDLENVSRSEHDSLSEYLNKLIMLNTQFNL VPERRIPMKKILIKLEGVEATKIGSFIDDDMTKFTVQELLSRQSAVLCISTLGKGLDI LSNYITASNWIDLDSNLSEEEPKHGRAQASVGTFKAKVYMVCFVSRSVDQLADFITWN CWKSVNLSYFLQKRTIRLVAGASMIFSGPKLSWVQVFEQMNASAKCKEDNDLCETIES GILEYLAGVLDGQLHQLWNLSPVLLAIAIPFWSPLFRLYLSEIQTQFKGDSSVMRCCS CIQERKEHEDCVIK" gene 223425..224210 /locus_tag="RCOM_0542820" mRNA 223425..224210 /locus_tag="RCOM_0542820" /product="conserved hypothetical protein" /note="transcript RCOM_0542820A" CDS 223433..223801 /locus_tag="RCOM_0542820" /note="encoded by transcript RCOM_0542820A; GO_component: GO:0005739 - mitochondrion" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35835.1" /translation="MVFYAYNNSLSINTYPELTMKLVMKILSGQSVKKNQFIKWGKRI ATTESAITLGNVRNRVPFSCCCGLRVLRQLLWKFRTQWKQALGWRRNSVKYSYDIHSY SLNFDDGLYHDNHSSKGSSQ" gap 228377..228453 /estimated_length=77 gene <230321..>233366 /locus_tag="RCOM_0542930" mRNA join(<230321..230712,231728..231937,232906..233067, 233312..>233366) /locus_tag="RCOM_0542930" /product="Acid phosphatase 1 precursor, putative" /note="transcript RCOM_0542930A" CDS join(230321..230712,231728..231937,232906..233067, 233312..233366) /locus_tag="RCOM_0542930" /EC_number="3.1.3.2" /note="encoded by transcript RCOM_0542930A; GO_component: GO:0009505 - plant-type cell wall; GO_function: GO:0003993 - acid phosphatase activity" /codon_start=1 /product="Acid phosphatase 1 precursor, putative" /protein_id="EEF35836.1" /translation="MARNLVFILALTSLCISLVAADWNILNQKRRNGFKSESTSGLKN YCESWRINVELNNIREFKVVPQECIAYIKHYMTSSQYEADSERAIEEVKLYLSTCCHL QSDGKDAWIFDVDDTLLSTIPYYKKHGFGGEKLNTSLLEEWMKESKAPALEHTLKLFH VIKDKGVKIFLVSSRSETLRSATVDNLINVGYHGWSSLILRGLEDEFTNLQEYKSKAR KRLMDEGYRIWGIIGDQWSSIKGLPSAKRTFKLPNSIIPSPPSPPPPPPPPRTK" gene <237701..>242318 /locus_tag="RCOM_0542940" mRNA join(<237701..238354,238437..238647,238730..238806, 238930..238969,240460..240517,241294..241363, 241953..>242318) /locus_tag="RCOM_0542940" /product="transcription factor, putative" /note="transcript RCOM_0542940A" CDS join(237701..238354,238437..238647,238730..238806, 238930..238969,240460..240517,241294..241363, 241953..242318) /locus_tag="RCOM_0542940" /note="encoded by transcript RCOM_0542940A; GO_component: GO:0005634 - nucleus; GO_function: GO:0003677 - DNA binding; GO_function: GO:0003700 - transcription factor activity" /codon_start=1 /product="transcription factor, putative" /protein_id="EEF35837.1" /translation="MEARPTLSIQRSGVKQLSNLGVSGALSSSYPVLPTSREETYPKL SDAQQVAMEKGLMTRPLVHTNHLPSNNGVVGHLFSSSAGFSTDLQYSSVSPQEKHSRN TPFISQSPTNVAALTLPQSPHSGLLQCTASSQYDKENSASWCPESLPGFLDFPVNSHV QNNQIESNSCTGAITSEEFSKRNDWQEWADQLITDDDALTSNWNDLLVDNSAPEMEPK MAYQVSKPPSDISAHQPQVHQQLPAPSIDIRPVLTPTSSVNTAPSKPRMRWTPELHEA FVDAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSLEGSSEQKL TPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEK QCKSGTDVLKASSSAVENPSSALSSDAVHDSSGKNEMEASKVDHGNAITNTDDTKSKL EERSQDPNEKKKALQIEASGNPEPDNGESNSQSAKRPRLDV" gene 245189..>249710 /locus_tag="RCOM_0542950" mRNA join(245189..245250,245489..245687,245801..245934, 246172..246241,246325..246469,246561..247173, 247259..247396,247499..247624,247718..247930, 248032..248544,248622..248972,249129..>249710) /locus_tag="RCOM_0542950" /product="Cellulose synthase A catalytic subunit 6 [UDP-forming], putative" /note="transcript RCOM_0542950A" CDS join(245200..245250,245489..245687,245801..245934, 246172..246241,246325..246469,246561..247173, 247259..247396,247499..247624,247718..247930, 248032..248544,248622..248972,249129..249710) /locus_tag="RCOM_0542950" /EC_number="2.4.1.12" /note="encoded by transcript RCOM_0542950A; GO_component: GO:0016020 - membrane; GO_function: GO:0016760 - cellulose synthase (UDP-forming) activity; GO_process: GO:0030244 - cellulose biosynthetic process" /codon_start=1 /product="Cellulose synthase A catalytic subunit 6 [UDP-forming], putative" /protein_id="EEF35838.1" /translation="MAGLPATTSHPLQDYDEHRPPTRQSGKVSCRVCGDDIGVKEDGT LFVACHVCRFPVCKPCYEYERSEGNQCCPQCNTRYKRHRGCARVVGDDEDDIDADDFD DEFQIKQQQQQHHDHDPDHKNVFARSESGDYIPRQPLHTGGPVFSSAGSGKEIEAERE LYSNEEWKDRVEKWKVRQEKRGLVGKDDVGNDQGEEDEYLMAEARQPLWRKIPISSSK INPYRIVIIIRLFVLIFFLRFRVLTPAYDAYPLWLISVICEIWFAFSWILDQFPKWFP IERETYLDRLSMRFEREGEANRLAPIDFFVSTVDPLKEPPIITANTVLSILAVDYPVN KISCYVSDDGASMLLFDSLAETAEFARRWVPFCKKHNIEPRAPEFYFSQKIDYLKDKV HPNFVKERRAMKREYEEFKVKINSLVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQ VYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALIRVSAVLTNAPFMLNL DCDHYLNNSKAAREAMCFLMDPQLGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINM KGLDGVQGPVYVGTGCVFNRQALYGYDPPVSEKRLKMTCDCWPSWCCCCCGGSRKSKS KKKGQRSLFGGLLPRKKKMMGKNYMKKGSGAVFELEEIEEGLEGYEELEKSSLMSQKN FEKRFGQSPVFITSTLMEEGGLPEGTNPATLIKEAIHVISCGYEEKTEWGKEVGWIYG SITEDILTGFKMHCRGWKSIYCSPKIAAFKGSAPINLSDRLHQVLRWALGSVEIFMSR HCPLWYGYGGKLKWLERLAYINTVVYPFTSIPLLAYCTLPAVCLLTGKFIIPTLTNLA SIWFMALFLSIIATSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGG VDTNFTVTAKAADDAEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSW GPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLIWVRIDPFLP KQTGPILKQCGVEC" gap 246152..246154 /estimated_length=3 gene complement(<250667..>254601) /locus_tag="RCOM_0542960" mRNA complement(join(<250667..251040,251301..>254601)) /locus_tag="RCOM_0542960" /product="receptor protein kinase, putative" /note="transcript RCOM_0542960A" CDS complement(join(250667..251040,251301..254601)) /locus_tag="RCOM_0542960" /EC_number="2.7.11.25" /EC_number="1.3.1.74" /note="encoded by transcript RCOM_0542960A; GO_component: GO:0012505 - endomembrane system; GO_function: GO:0004672 - protein kinase activity; GO_function: GO:0004713 - protein tyrosine kinase activity; GO_function: GO:0005515 - protein binding; GO_function: GO:0005524 - ATP binding; GO_process: GO:0006468 - protein amino acid phosphorylation" /codon_start=1 /product="receptor protein kinase, putative" /protein_id="EEF35839.1" /translation="MATTLKFSLLFLHFLFLCLFPLQITSSPRTQAEALVRWRNSFSS SPPSLNSWSLASLASLCNWTAISCDTTGTVSEIHLSNLNITGTLAQFSFSSFSNITSF DLQNNNIGGVIPSAIINLSKLTYLDLSSNFFEGSIPVEMGRLAELQFLNLYYNNLNGT IPYQLSNLQNVRYLDLGANFFQTPDWSKFSSMPSLIHLSLFFNELSSGFPDFLSNCRN LTFLDLSSNQFTGMVPEWAYTDLGKIEYLNLTENSFQGPLSSNISKLSNLKHLRLANN NFSGQIPGSIGFLSDLQIVELFNNSFIGNIPSSLGRLRNLESLDLRMNDLNSTIPPEL GLCTNLTYLALALNQLSGELPLSLANLTKMVDLGLSDNVLTGEISPYLFSNWTELFSL QLQNNMLSGHIPSEIGQLTKLNLLFLYNNTLSGSIPFEIGNLKDLGTLEISGNQLSGP IPPTLWNLTNLQVMNLFSNNISGIIPPDIGNMTALTLLDLSGNQLYGELPETISRLSS LQSINLFTNNFSGSIPSDFGKYSPSLSYASFSDNSFFGELPPEICSGLALKQFTVNDN NFTGSLPTCLRNCSGLTRVRLDGNQFTGNITDAFGVHPGLYFISLSGNQFIGEISPVW GECENLTNFHIDRNRISGEIPAELGKLTKLGALTLDSNDLTGMIPIELGNLSMLLSLN LSNNHLRGVIPLSLGSLSKLESLDLSDNKLSGNIPDELANCEKLSSLDLSHNNLSGEI PFELGNLNSLKYLLDLSSNSLSGPIPANLGKLTLLENLDVSHNNLSGRIPTALSGMIS LHSFDFSYNELTGPVPTDGMFQNASTEAFIGNSDLCGNIKGLSPCNLITSSGKSSKIN RKVLTGVIVPVCCLFLIAVIVVVVLISRRKSKLVDEEIKSSNKYESTESMIWKREGKF TFGDIVKATEDFNERYCIGKGGFGSVYKAVLSTDQVVAVKKLNVSDSSDIPAINRQSF ENEIRMLTEVRHRNIIKLYGYCSRRGCLYLVYEYVERGSLGKVLYGVEAELELGWATR VKIVQGVAHAVAYLHHDCSPPIVHRDISLNNILLELEFEPRLSDFGTARLLSKDSSNW TAVAGSYGYMAPELALTMRVTDKCDTYSFGVVALEVMMGKHPGELLTSLSSLKMSMTN DTELCLNDVLDERLPLPAGQLAEEVVFVVKVALACTRTVPEERPSMRFVAQELAARTQ AYLSEPLDNITLSKLAGFQK" gap 254948..255041 /estimated_length=94 gene <258041..>258478 /locus_tag="RCOM_0543070" mRNA join(<258041..258186,258343..>258478) /locus_tag="RCOM_0543070" /product="conserved hypothetical protein" /note="transcript RCOM_0543070A" CDS join(258041..258186,258343..258478) /locus_tag="RCOM_0543070" /note="encoded by transcript RCOM_0543070A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35840.1" /translation="MHSKKFSLNFPTLPSWTLNHSSRCSWTGIQRNEAGSIFELSLQN PGLDRSNSSNLQKLRLLNRGVHYLENPDPVQFKGMAGILNRAWIYPTSS" gene <258559..>258735 /locus_tag="RCOM_0543080" mRNA <258559..>258735 /locus_tag="RCOM_0543080" /product="conserved hypothetical protein" /note="transcript RCOM_0543080A" CDS 258559..258735 /locus_tag="RCOM_0543080" /note="encoded by transcript RCOM_0543080A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35841.1" /translation="MQLLTPLQRLGIKKLNGVIPDEIRHLSKLEMLELHESEFYGPLP FSTRNLRMLHNLKS" gene complement(<261138..>262891) /locus_tag="RCOM_0543090" mRNA complement(join(<261138..261230,261310..262396, 262499..262587,262805..>262891)) /locus_tag="RCOM_0543090" /product="conserved hypothetical protein" /note="transcript RCOM_0543090A" CDS complement(join(261138..261230,261310..262396, 262499..262587,262805..262891)) /locus_tag="RCOM_0543090" /note="encoded by transcript RCOM_0543090A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35842.1" /translation="MGCFLACFGSSKDRSKRRKHRHKVQPRDQRNAGLKPVQSAVSLV QNYPEIPTNPVSEIRDNKPEEPLNLSPRKKVTFDSIVTTYEHASVEESTEFCVEKEDG GKRKEKEENLVKPSQSHSSSDDSSITSSSGSFPSNHRYQNCRDSDDELDYGESDVDDD DDDDDDDDDEDEDEDDGALDFDDVYEDDGVLESGPKLSVAKGALPFTEEVDSSVMTSS LHDREVKPNPNARDRSGYVHSVLNPVENLTQWKAVKAKGTPLLKQQKENHTLGQEPRT SFSSEPSFRELSFSFKAKSEQSKKANQEVAVDASLSNWLGSSESTPISKPSTNGFDTF TPEKSTTVGSNSPKSFEDRPILGALTMEEIKQFSASSSPRKSPSRSPDEMPIIGTVGT YWNDSVTSKHSDSASSFKGIPNTTSKYREDKRVNWYSTPFETRLERALNNGGAAAAGS H" gene complement(264237..264324) /locus_tag="RCOM_0543100" tRNA complement(264237..264324) /locus_tag="RCOM_0543100" /product="tRNA-Met" /note="anticodon CAT" gap 264605..264607 /estimated_length=3 gap 269467..270216 /estimated_length=750 gene 270217..272530 /locus_tag="RCOM_0543210" mRNA join(270217..270264,271129..272530) /locus_tag="RCOM_0543210" /product="Circumsporozoite protein precursor, putative" /note="transcript RCOM_0543210A" gene complement(<270633..>270929) /locus_tag="RCOM_0543220" mRNA complement(<270633..>270929) /locus_tag="RCOM_0543220" /product="conserved hypothetical protein" /note="transcript RCOM_0543220A" CDS complement(270633..270929) /locus_tag="RCOM_0543220" /note="encoded by transcript RCOM_0543220A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35844.1" /translation="MQKYKQHTQGVISTVLKKYIAKKLKVQLKDVNNQIQEEQTSFDQ VFIEMWAFHDLNSRIFQQLQGEERKQEKEEEEEEEEEKAQYKIPLLSKSDPIRA" CDS 271330..272175 /locus_tag="RCOM_0543210" /note="encoded by transcript RCOM_0543210A; GO_function: GO:0003676 - nucleic acid binding" /codon_start=1 /product="Circumsporozoite protein precursor, putative" /protein_id="EEF35843.1" /translation="MFDQQTQRPRGFGFITFDAEDAVDRVLHKVFHELNGKLVEVKRA LPKDANPGGGGRGGGYPGYGASGGNLSAVDGRMDGNRYMQTQTSAGGYPPYSGYGAPT YGYGAANTGAGYGGYSGYGLGGYGAGPTGAYGMPGALKNNWGSQVPSGYGASGYGANA NYGAPAPWNASGGGNSPSAPMGQSPGGASGYGSYGYSNYGGSDGSYPGGYGAAGGRAG NGPSNGGGTGTGGGEQQGSGGGYGGGYGDANGNSGYGNEAWRSDPSQASGGYGGTQSR QAPQP" gap 272933..272935 /estimated_length=3 gene <278164..>280862 /locus_tag="RCOM_0543230" mRNA join(<278164..278305,278447..278664,279151..279722, 279998..>280862) /locus_tag="RCOM_0543230" /product="oligopeptide transporter, putative" /note="transcript RCOM_0543230A" CDS join(278164..278305,278447..278664,279151..279722, 279998..280862) /locus_tag="RCOM_0543230" /note="encoded by transcript RCOM_0543230A; GO_component: GO:0016020 - membrane; GO_function: GO:0005215 - transporter activity; GO_process: GO:0006857 - oligopeptide transport; GO_process: GO:0009624 - response to nematode" /codon_start=1 /product="oligopeptide transporter, putative" /protein_id="EEF35845.1" /translation="MAKLGEEEEEGPVDGKEDYTEDGTVDIKGKPVLRSKTGRWRACS FIVGYEIFERMAYYGIASNLVLYLTKKLHEGTVASSNNVTNWVGTVWILPILGAYIAD AHLGRFWTFLISSAIYLMGMSLLTLAVSVHALRPPSCGQGIKEELCDKRASPLQKGVF YGALYIIAVGTGGTKPNISTMGADQFDEFQPKERIQKLSFFNWWMFSIFFGTLFSSTF LIYIQDNVGWSLGYGLPTAGLAVSIIVFLIGTPFYRHKLPAGTPFTKIAQVLVAATRK WKDPVPNDPKELHELGIEEYSRSEKFRIDHTLSLRFLDKAAVKSGSSSSSWILCPVTQ VEETKQMIKMLPVLLTTLIPSTVVAQVGTFFIRQGTTLDRSMGPNFEIPPACLTAFVT IFMLISLILYDRYAVPITRRYTKNPRGITLLQRMGIGLFLHIIIMVIACIAERKRLSV AKEHKIFGKSDTVPLSIFILLPQFALMGVADAFVEVAKLEFFYDQAPEGMKSLGTSYF TSSLGIGNYLSSFLLTTVSDATKAHGHRGWILDNLNISHLDYYYAFLAILSFLNFLAY LLVAKFFVYNVDQESKRNMQEAIIESSPSRKI" gap 281526..281528 /estimated_length=3 gene <282968..>285533 /locus_tag="RCOM_0543240" mRNA join(<282968..283100,283458..283675,283915..284486, 284663..>285533) /locus_tag="RCOM_0543240" /product="oligopeptide transporter, putative" /note="transcript RCOM_0543240A" CDS join(282968..283100,283458..283675,283915..284486, 284663..285533) /locus_tag="RCOM_0543240" /note="encoded by transcript RCOM_0543240A; GO_component: GO:0016020 - membrane; GO_function: GO:0005215 - transporter activity; GO_process: GO:0006857 - oligopeptide transport; GO_process: GO:0009624 - response to nematode" /codon_start=1 /product="oligopeptide transporter, putative" /protein_id="EEF35846.1" /translation="MDKVEEKGPANGRDDYTEDGTVDLKGRPILRSKTGRWRACWFIV GYEVFERMAYYGIASNLVLYLTKKLHEGTVASSNNVTNWAGTVWILPILGAYIADAHL GRFWTFIIASAIYLMGMTLLTLAVSLPSLRPPSCGPNIKEEDCDLKASALQKGIFYGA LYIIAAGTGGTKPNISTMGADQFDDFEPKERTQKLSFFNWWMFSIFFGTLFSNTFLVY IQDNVGWTLGYALPTVGLAVSIAVFLVGTQFYRHKLPAGSPFTRIAQVLVAAFRKQHV PLPNDPKELHELSLEEYSRSGKFRIDHTPSLRFFDKAAVKTDSTSPWMLCPVTQVEET KQMMKMLPVLVVTFIPSTMLAQVHTLFIKQGTTLDRRMGPHFEIPPACLTAFVTIFML ISLVLYDRYFVPAVRRYTKNPRGITLLQRMGIGFILHVIIMTAACLAERRRLNVAKEH NIVEKDAIVPLSIFILLPQFALMGVADTFVEVAKLEFFYDQAPDGMKSLGTSYFTSSL GIGNFLSSFLLGTVADITKKHGHKGWILDNLNISHLDYYYAFLTILTFINLLAFFVVA KFFDYNSDVDAKKDLQEAVETSPNKLHTGDT" gene <299596..>303114 /locus_tag="RCOM_0543250" mRNA join(<299596..299764,301043..301553,302244..>303114) /locus_tag="RCOM_0543250" /product="oligopeptide transporter, putative" /note="transcript RCOM_0543250A" CDS join(299596..299764,301043..301553,302244..303114) /locus_tag="RCOM_0543250" /note="encoded by transcript RCOM_0543250A; GO_component: GO:0016020 - membrane; GO_function: GO:0005215 - transporter activity; GO_process: GO:0006857 - oligopeptide transport; GO_process: GO:0009624 - response to nematode" /codon_start=1 /product="oligopeptide transporter, putative" /protein_id="EEF35847.1" /translation="MTYSGIASNLVLYLTRKLHEGTVASSNNVTNFRCIRCRCSSWPI LDFYHCFCNLSHGNDSVNLSSFRPPSCGPNIKEENCDLKASALQKGIFYGALYIIAAG TGGTKPNISTMGADQFDDFEPKERTQKLSFFNWWMFSIFIGTLFSYTFLVYIQDNVGW ALCYALPTIGLAVSIAIFFAGTPFYRHKLLAGSPFTRIVQVFIAAFRKQHVPLPKDHK ELHELSPEEFFDKAAVKTDSTSPWMLYPVTQVEETKQMMKMLPVLVVTFIPSTMLAQV HTLFIKQGTTLDRRMGPHFEIPPACLSAFMTIFMLISLVLYDRYFVLAVRRYTKNPRG ITLLQRMGIGFILHVIIMAAACLAERKRLNAAKEHNIVEKDAIVPLSTFILLPQFALM GVADTFVEVAKLEFFYDQAPDGMKSLGTSYFTSSVGIGNFLSSFLLKTVADITKTHGH KGWILDNLNISRLDYYYAFLTILTFINLSAFLIVAKYFDYNKDVDAKKELQEAIEASP DKLHTEDT" gap 303331..303333 /estimated_length=3 gene complement(<303463..>308799) /locus_tag="RCOM_0543260" mRNA complement(join(<303463..303843,304019..304137, 304560..304725,305113..305203,305490..305599, 305714..305900,306036..306136,306317..306649, 307067..307494,307590..307685,308380..308450, 308539..308592,308702..>308799)) /locus_tag="RCOM_0543260" /product="brca1 associated ring domain, putative" /note="transcript RCOM_0543260A" CDS complement(join(303463..303843,304019..304137, 304560..304725,305113..305203,305490..305599, 305714..305900,306036..306136,306317..306649, 307067..307494,307590..307685,308380..308450, 308539..308592,308702..308799)) /locus_tag="RCOM_0543260" /note="encoded by transcript RCOM_0543260A; GO_component: GO:0005622 - intracellular; GO_function: GO:0003713 - transcription coactivator activity; GO_function: GO:0005515 - protein binding; GO_function: GO:0008270 - zinc ion binding" /codon_start=1 /product="brca1 associated ring domain, putative" /protein_id="EEF35848.1" /translation="MADSMKHNSVIRSMNPWVLHLQKLGLELKCPLCLNFLKRPFLLP CDHIFCNSCLHERTKFASECPVCKDQYVGRDLRPLPFIENMVAIYRSLDSAFCANMFQ SSCSDTGKISEQCPTSAGADCNDKLSKESIGQEDNSSSGRSMYLLKGNQLAQVPLNSS QNGARNIDMADKSNVQRVTKDGEYEIVGGDAKQNINSTPISSQVRAGRLQECGLLRIS TNQADQLSTGSPPSFGDVKSPENDSCDQGDDSPTNYQAIRLVKRSPDDMTSQERHDGF ASGTEGGNLRDPKRHKKLDYGQLNRDTNRSSPISSQTENPGACCSQLGHKFVPPHIDG QPPALLEDSSVAKIMCGFCQSSRTSKDTGPMFHYVNGKLVEGDEASGPNALHVHRICI EWAPQVYFVDETVKNLKAELARGSKLKCSKCGLKGAALGCFQKSCRRSYHVTCAMEIA GCRWDYDNFLVLCPSHSSVRFPDEKKSKSKKHSLERHHVPTQVPPQQPNFWAESATGA KEWVFCGSALSSEEKSLLIEFGRMIGVPVTKFWQPNVTHVIAATDTKGACTRTLKVLM AILNGRWVLTIDWVKACMRSMHYVDEEPYEVSLDNHGCHSGPRTGRLSVLDNAPKLFS GLNFYFAGDFVSGYKEDLQNLVLAAGGTILDSKEKVVEQSHNEATPSRTLVVYNFDPP LGCKLGEEVTILWQRLSEAEDLAAKIGSQVIAHTWLLESIASYKFQPFVSLNSTHDDN NLLA" gene complement(<311051..>317182) /locus_tag="RCOM_0543270" mRNA complement(join(<311051..311273,313696..313820, 313913..314146,314264..314755,315385..316435, 316852..316949,316991..>317182)) /locus_tag="RCOM_0543270" /product="protein with unknown function" /note="transcript RCOM_0543270A" CDS complement(join(311051..311273,313696..313820, 313913..314146,314264..314755,315385..316435, 316852..316949,316991..317182)) /locus_tag="RCOM_0543270" /note="encoded by transcript RCOM_0543270A" /codon_start=1 /product="protein with unknown function" /protein_id="EEF35849.1" /translation="MESSTVSSTFRFRDHHQPEEATESDTSSGISSVSSDRDEESELE SMTGEVDWVACFQSPLQLEYGIRRLCMEFLEIKEASDEDFYRNIFANYSAFIGIHEEV KDIEKKLMQLRTHVAMQKMLVKDLTDGLYLKVLSVQTMDSISEELICDESLPLNELEV HISNVSETLDVLLSENRADEAIAILEMEQENLQNVQYEDDTSSDVLMLYNNAISERKE MLILQLARVAENSRTSASELHKALVGICRLGQSHLATRLLLKYYHSRIASGIHNLQSS KSCLQGVYIRELSRFVFSMISQAARSFMMLYGETSAYASEFMQWIHEEIEVFAVSFTK YVKSISEISGGLSTAVEAVQFATSYCCQLETQRLVLQPLLIKHLRTCMENILAEHIEH FKKVISIFTASDAWVLGRYLVSGILNEGYSYVVVGQEPEYCLLTNSGRKFVTLLQAIS KDVTPLAALQMEGSILAGLSDLFMEYITILEEAITCDVNMSEKSGFRVILAESVPQQV SILANLSTLEIFFSNTVRSIFRGTNCIDSEKIKIHRVGFPDQEVDSCVMFIQEASTRL KAQVFKQFIDRVLSPEVCKLTPEMWVDSENRSRLFNGLLPSSVFQSAKGILPIGFDFL VRQVLFLELRKLNKLSEDDIFEAKWLMQLIRELIEAIFAWISSNKKIWETDKGDLNFQ HPEISDQFVLDMHFLVEAIKYGEYFSKDPLVPATLMKEAINSAGLDPFRDIYDDGWAM KAATEAVEKLLEIEKTELLLEDEAAEDLAVPSKNHFEHASDTFQDAARSSLDIFSSSE EDDEKI" gene <318533..>326587 /locus_tag="RCOM_0543280" mRNA join(<318533..318769,319239..319374,319482..319626, 320456..320625,320732..320808,321215..321428, 321517..321694,322104..322203,322697..322791, 324132..324183,324271..324342,325435..325603, 326149..326253,326328..326412,326506..>326587) /locus_tag="RCOM_0543280" /product="phosphatidylcholine acyltransferase, putative" /note="transcript RCOM_0543280A" CDS join(318533..318769,319239..319374,319482..319626, 320456..320625,320732..320808,321215..321428, 321517..321694,322104..322203,322697..322791, 324132..324183,324271..324342,325435..325603, 326149..326253,326328..326412,326506..326587) /locus_tag="RCOM_0543280" /EC_number="2.3.1.158" /note="encoded by transcript RCOM_0543280A; GO_component: GO:0012505 - endomembrane system; GO_function: GO:0004607 - phosphatidylcholine-sterol O-acyltransferase activity; GO_process: GO:0006629 - lipid metabolic process" /codon_start=1 /product="phosphatidylcholine acyltransferase, putative" /protein_id="EEF35850.1" /translation="MKGIELLNLAIVLTILILGGGVSRGTSGNSEFNGDYSKVSGIII PGFASTQLRAWSFLDCPFSPLDFNPLDLVWLDTTKLLSAVNCWLKCMLLDPYNQTDHP ECKSRPDSGLSAITELDPGYITGPLSSVWKDWVKWCIELGIEANAIIAVPYDWRLSPS MLEERDLYFHKLKLTFETTLKLRGGPSIVLAHSLGNHVFRYFLEWLKLEIAPKHYNQW LDEHIHAYFSVGAPLLGATGTVKATLFGETFGLPVSEGTARLMFNSFASSLWMMPFSK YCTSDNPYWKHFSRASKKSHQTYQCEEREFQSNYSGWPTNMVNIEIPSIRGLQLYPSV TEVAQTNLSSMECGFPTTQLSFSALEVSDGTLFKAIEDYDSDSKRLLYHLEKSYHGDP ILNPLTPWERPPIKNVFCIYGIDMKTEVGYYFAPSGKPYPDNWIITDVIYELEGSLFS RSGTMIEGTPGAASGDETVPYNSLSFCKNWLGSKVNITRAPQSHHNGSDVQVELNVEH HHGADILPNMTRSLSKKYITYYEDSESVPGKKTAVWELDKANHRNIVRSEILMRELWL QIWHDIQSDAKSEFVTKAMRGPLRDGDCYWDYGKARCAWPEYCEYRYIFGDVHLGQSC RLKNSSADVLLRYV" gene complement(<330726..>331490) /locus_tag="RCOM_0543290" mRNA complement(<330726..>331490) /locus_tag="RCOM_0543290" /product="conserved hypothetical protein" /note="transcript RCOM_0543290A" CDS complement(330726..331490) /locus_tag="RCOM_0543290" /note="encoded by transcript RCOM_0543290A" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EEF35851.1" /translation="MSDNYNVYVSAFCLGPRESKSLTTSDVSIVLKVVSSYLSDVTVS MDKCYRTWESFSLAKTVTKEIRSSCKEKSFKFPCHSLVSDDGTLSSSLWDLVSKTISD MEIPFSLDRLQWRASPKDEWISLPNQDELIRQILNLAHCKASAITAADQPKELAFQVS IKKEIVLPHHEFEAMVNARRTEEVRQKITETIHWINRQPVSYRIHYLRELRANPEHAS FGSLIEQATREASEQAGSKLIPASKSSIEELEGGGI" gene complement(<334764..>337645) /locus_tag="RCOM_0543300" mRNA complement(join(<334764..334832,335198..335322, 336091..336312,336410..336473,337391..>337645)) /locus_tag="RCOM_0543300" /product="Rho GDP-dissociation inhibitor, putative" /note="transcript RCOM_0543300A" CDS complement(join(334764..334832,335198..335322, 336091..336312,336410..336473,337391..337645)) /locus_tag="RCOM_0543300" /note="encoded by transcript RCOM_0543300A; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0005094 - Rho GDP-dissociation inhibitor activity" /codon_start=1 /product="Rho GDP-dissociation inhibitor, putative" /protein_id="EEF35852.1" /translation="MEGEKGLMEAAGPSSTKDCGVVSEKQEIRQEEMAENLRAEEAVI DDVGDDDDDNEEEEEITNGVPVTGFVPGPLLSLKDQIDKDKDDDSLRRWKEKLLGCVE SELNGQMEPEVKFHSIGIISNDLEEINTPLPVDANRSGRLLFTLKEGSRYQLKLTFSV LHNIVSGLTYSNTVWKGGLQVDKNKGMLGTFAPQREPYVHTLEEETTPSGVLARGTYS AKLKFEDDDRRCHMELKYSFEIKKNK" gap 337655..338001 /estimated_length=347 gene complement(<340569..346223) /locus_tag="RCOM_0543410" mRNA complement(join(<340569..340888,341426..341579, 341985..343201,343935..344187,345065..345354, 345903..346223)) /locus_tag="RCOM_0543410" /product="calmodulin binding protein, putative" /note="transcript RCOM_0543410A" CDS complement(join(340569..340888,341426..341579, 341985..343201,343935..344187,345065..345331)) /locus_tag="RCOM_0543410" /note="encoded by transcript RCOM_0543410A" /codon_start=1 /product="calmodulin binding protein, putative" /protein_id="EEF35853.1" /translation="MKSTFKVKRRRRGIIRRDLGKIMKCLCSGELSRPVDEMVPSSES LANKDYSLGGYSSKNGEADSKPDTSTINIEEAELTLRERGSLNYEEARALLGRIEYQK GNVEAALHVFEGIDIAAVTPKMKVTLSRKGEHRKRNSQNFATPPMSIHAVNLLLEAVF LKAKSLQHLGRFNEAAQSCKVILDIVETSLPEGLPENFAADCKLQETINKAVELLPEL WKLADSPREAIMSYRRSLLHHWNLDAETTARIQKDFAIFLLYSGGEASPPNLRSQMDS SFVPRNNVEEAILLLMILLRKVSLKRIEWDESILDHLSFALSVSGDLKALANQVEELL PGIVGRREMYYMLALCYHGAGEDLVALNLLRKLLHSREDPKCVPALLMASKICGNTPT LAEEGIKYSRRALENLESGCNQLESITNCLLGVSLSAHSKLLIADSERILRQSEALQV LELAGKTTQIQDPYILYHLTLESADQRKLEVALFYAKCLLKLENGSNINGWLLLARIL SAQKRYVDAETIISAALDQTGKWDQGELLRTRARLQIAQGQLKSAIKTYGQLLAILQV QTKSFGSAKKPLKGNGKPIRSLELEVWHDLASVYISLSQWHDAEICLSKSKAISSYSA SRCHTAGALYERKGLHKEALKAFTSALEIDPAHVPSLVSGAVALRRLGNQSNEVIRGF LMDALRLDRMNSSAWYNLGLLYKAEGSASSLQEATECFEAATFLEDTAPVEPFR" gap 347837..348367 /estimated_length=531 gap 355769..356379 /estimated_length=611 CONTIG join(AASG02006243.1:1..15423,gap(3), complement(AASG02006432.1:1..14961),gap(495), AASG02024546.1:1..1997,gap(425),AASG02006450.1:1..14906,gap(3), AASG02013102.1:1..6163,gap(292),AASG02015588.1:1..4685,gap(59), AASG02010031.1:1..8765,gap(114),complement(AASG02016407.1:1..4259), gap(3),AASG02020947.1:1..2657,gap(48), complement(AASG02019259.1:1..3135),gap(1253), AASG02006118.1:1..15676,gap(4941), complement(AASG02016364.1:1..4276),gap(3),AASG02013682.1:1..5798, gap(3),complement(AASG02022319.1:1..2365),gap(498), AASG02014619.1:1..5232,gap(3),AASG02020359.1:1..2814,gap(3), AASG02002325.1:1..31137,gap(3),AASG02029054.1:1..1564,gap(3), AASG02004995.1:1..18819,gap(738), complement(AASG02019305.1:1..3123),gap(831), AASG02005988.1:1..15998,gap(315),AASG02007798.1:1..12125,gap(525), complement(AASG02012982.1:1..6237),gap(42),AASG02006127.1:1..15658, gap(77),complement(AASG02005371.1:1..17698),gap(3), AASG02010007.1:1..8793,gap(94),AASG02009415.1:1..9563,gap(3), AASG02015265.1:1..4859,gap(750),complement(AASG02020712.1:1..2716), gap(3),AASG02010179.1:1..8590,gap(3),AASG02004065.1:1..21802, gap(3),AASG02001961.1:1..34321,gap(347),AASG02009222.1:1..9835, gap(531),complement(AASG02011380.1:1..7401),gap(611), AASG02023310.1:1..2193) //