LOCUS EF579660 5187 bp DNA circular VRL 13-DEC-2007 DEFINITION Simian virus 40 isolate SV40(Ad)211, complete genome. ACCESSION EF579660 VERSION EF579660.1 KEYWORDS . SOURCE Betapolyomavirus macacae ORGANISM Betapolyomavirus macacae Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Betapolyomavirus. REFERENCE 1 (bases 1 to 5187) AUTHORS Peden,K., Sheng,L., Omeir,R., Yacobucci,M., Klutch,M., Laassri,M., Chumakov,K., Pal,A., Murata,H. and Lewis,A.M. Jr. TITLE Recovery of strains of the polyomavirus SV40 from rhesus monkey kidney cells dating from the 1950s to the early 1960s JOURNAL Virology 370 (1), 63-76 (2008) PUBMED 17900651 REFERENCE 2 (bases 1 to 5187) AUTHORS Peden,K., Sheng,L., Omeir,R., Yacobucci,M., Klutch,M., Laassri,M., Chumakov,K., Pal,A., Murata,H. and Lewis,A.M. Jr. TITLE Direct Submission JOURNAL Submitted (25-APR-2007) Division of Viral Products, CBER/FDA, 29 Lincoln Drive, Bethesda, MD 20892, USA FEATURES Location/Qualifiers source 1..5187 /organism="Betapolyomavirus macacae" /mol_type="genomic DNA" /isolate="SV40(Ad)211" /isolation_source="human adenovirus type 7 stock grown in primary rhesus monkey kidney cells" /db_xref="taxon:1891767" /geo_loc_name="USA" CDS 282..470 /codon_start=1 /product="agnoprotein" /protein_id="ABU86051.1" /translation="MVLRRLSRQASVKVRRSWTESKKTAQRLFVFVLELLLQFCEGED TVDGKRKKPERLTEKPES" gene 509..1567 /gene="vp2" CDS 509..1567 /gene="vp2" /codon_start=1 /product="VP2" /protein_id="ABU86052.1" /translation="MGAALTLLGDLIATVSEAAAATGFSVAEIAAGEAAAAIEVQLAS VATVEGLTTSEAIAAIGLTPQAYAVISGAPAAIAGFAALLQTVTGVSAVAQVGYRFFS DWDHKVSTVGLYQQPGMAVDLYRPDDYYDILFPGVQTFVHSVQYLDPRHWGPTLFNAI SQAFWRVIQNDIPRLTSQELERRTQRYLRDSLARFLEETTWTVINAPVNWYNSLQDYY STLSPIRPTMVRQVANREGLQISFGHTYDNIDEADSIQQVTERWEAQSQSPNVQSGEF IEKFEAPGGANQRTAPQWMLPLLLGLYGSVTSALKAYEDGPNKKKRKLSRGSSQKTKG TSASAKARHKRRNRSSRS" gene 863..1567 /gene="vp3" CDS 863..1567 /gene="vp3" /codon_start=1 /product="VP3" /protein_id="ABU86053.1" /translation="MAVDLYRPDDYYDILFPGVQTFVHSVQYLDPRHWGPTLFNAISQ AFWRVIQNDIPRLTSQELERRTQRYLRDSLARFLEETTWTVINAPVNWYNSLQDYYST LSPIRPTMVRQVANREGLQISFGHTYDNIDEADSIQQVTERWEAQSQSPNVQSGEFIE KFEAPGGANQRTAPQWMLPLLLGLYGSVTSALKAYEDGPNKKKRKLSRGSSQKTKGTS ASAKARHKRRNRSSRS" gene 1446..2540 /gene="vp1" CDS 1446..2540 /gene="vp1" /codon_start=1 /product="VP1" /protein_id="ABU86054.1" /translation="MKMAPTKRKGSCPGAAPKKPKEPVQVPKLVIKGGIEVLGVKTGV DSFTEVECFLNPQMGNPDEHQKGLSKSLAAEKQFTDDSPDKDQLPCYSVARIPLPNLN EDLTCGNILMWEAVTVKTEVIGVTAMLNLHSGTQKTHENGAGKPIQGSNFHFFAVGGE PLELQGVLANYRTKYPAQTVTPKNATVDSQQMNTDHKAVLDKDNAYPVECWVPDPSKN ENTRYFGTYTGGENVPPVLHITNTATTVLLDEQGVGPLYKADSLYVSAVDICGLFTNT SGTQQWKGLPRYFKITLRKRSVKNPYPISFLLSDLINRRTQRVDGQPMIGMSSQVEEV RVYEDTEELPGDPDMIRYIDEFGQTTTRMQ" CDS complement(join(2638..4515,4862..5107)) /codon_start=1 /product="large T antigen" /protein_id="ABU86055.1" /translation="MDKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD KGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEEN LFCSEEMPSSDDEATADSQHSTPPKKKRKVEDPKDFPSELLSFLSHAVFSNRTLACFA IYTTKEKAALLYKKIMEKYSVTFISRHNSYNHNILFFLTPHRHRVSAINNYAQKLCTF SFLICKGVNKEYLMYSALTRDPFSVIEESLPGGLKEHDFNPEEAEETKQVSWKLVTEY AMETKCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHEKHYANAAIFADSKNQK TICQQAVDTVLAKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVA WLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV NLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVN LEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEK RIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVAMGTG VLDWLRNSDDDDEDSQENADKNEDGGEKNMEDSGHETGIDSQSQGSFQARQPSQSSQS VHDQPYHICRGFTCFKKPPPPEPET" CDS complement(4583..5107) /codon_start=1 /product="small T antigen" /protein_id="ABU86056.1" /translation="MDKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD KGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEVFASSLNPGVDAIYCKQWPE CAKKMSTNCICLLCLLRMKHENRKLYRKDPLVWVDCYCFDCFRMWFGLDLCEGTLLLW CDIIGQTTYRDLKL" BASE COUNT 1507 a 1091 c 1022 g 1567 t ORIGIN 1 gcctcggcct ctgcataaat aaaaaaaatt agtcagccat ggggcggaga atgggcggaa 61 ctgggcggag ttaggggcgg gatgggcgga gttaggggcg ggactatggt tgctgactaa 121 ttgagatgca tgctttgcat acttctgcct gctttgcata cttctgcctg ctggggagcc 181 tggggacttt ccacacccta actgacacac attccacagc tggttctttc cgcctcagaa 241 ggtacctaac caagttcctc tttcagaggt tatttcaggc catggtgctg cgccggctgt 301 cacgccaggc ctccgttaag gttcgtaggt catggactga aagtaaaaaa acagctcaac 361 gcctttttgt gtttgtttta gagcttttgc tgcaattttg tgaaggggaa gatactgttg 421 acgggaaacg caaaaaacca gaaaggttaa ctgaaaaacc agaaagttaa ctggtaagtt 481 tagtcttttt gtcttttatt tcaggtccat gggtgctgct ttaacactgt tgggggacct 541 aattgctact gtgtctgaag ctgctgctgc tactggattt tcagtagctg aaattgctgc 601 tggagaggcc gctgctgcaa ttgaagtgca acttgcatct gttgctactg ttgaaggcct 661 aacaacctct gaggcaatag ctgctatagg cctcactcca caggcctatg ctgtgatatc 721 tggggctcct gctgctatag ctggatttgc agctttactg caaactgtga ctggtgtgag 781 cgctgttgct caagtggggt atagattttt tagtgactgg gatcacaaag tttctactgt 841 tggtttatat caacaaccag gaatggctgt agatttgtat aggccagatg attattatga 901 tattttattt cctggagtac aaacctttgt tcacagtgtt cagtatcttg accccagaca 961 ttggggtcca acacttttta atgccatttc tcaagctttt tggcgtgtaa tacaaaatga 1021 cattcctagg ctcacctcac aggagcttga aagaagaacc caaagatatt taagggacag 1081 tttggcaagg tttttagagg aaactacttg gacagtaatt aatgctcctg ttaattggta 1141 taactcttta caagattact actctacttt gtctcccatt aggcctacaa tggtgagaca 1201 agtagccaac agggaagggt tgcaaatatc atttgggcac acctatgata atattgatga 1261 agcagacagt attcagcaag taactgagag gtgggaagct caaagccaaa gtcctaatgt 1321 gcagtcaggt gaatttattg aaaaatttga ggctcctggt ggtgcaaatc aaagaactgc 1381 tcctcagtgg atgttgcctt tacttctagg cctgtacgga agtgttactt ctgctctaaa 1441 agcttatgaa gatggcccca acaaaaagaa aaggaagttg tccaggggca gctcccaaaa 1501 aaccaaagga accagtgcaa gtgccaaagc tcgtcataaa aggaggaata gaagttctag 1561 gagttaaaac tggagtagac agcttcactg aggtggagtg ctttttaaat cctcaaatgg 1621 gcaatcctga tgaacatcaa aaaggcttaa gtaaaagctt agcagctgaa aaacagttta 1681 cagatgactc tccagacaaa gaccaactgc cttgctacag tgtggctaga attcctttgc 1741 ctaatttaaa tgaggactta acctgtggaa atattttgat gtgggaagct gttactgtta 1801 aaactgaggt tattggggta actgctatgt taaacttgca ttcagggaca caaaaaactc 1861 atgaaaatgg tgctggaaaa cccatacaag ggtcaaactt tcattttttt gctgttggtg 1921 gggaaccttt ggagctgcag ggtgtgttag caaactacag gaccaaatat cctgctcaaa 1981 ctgtaacccc aaaaaatgct acagttgaca gtcagcagat gaacactgac cacaaggctg 2041 ttttggataa ggataatgct tatccagtgg agtgctgggt tcctgatcca agtaaaaatg 2101 aaaacactag atattttgga acctacacag gtggggaaaa tgtgcctcct gttttgcaca 2161 ttactaacac agcaaccaca gtgctgcttg atgagcaggg tgttgggccc ttgtacaaag 2221 ctgacagctt gtatgtttct gctgttgaca tttgtgggct gtttaccaac acttctggaa 2281 cacagcagtg gaagggactt cccagatatt ttaaaattac ccttagaaag cggtctgtga 2341 aaaaccccta cccaatttcc tttttgttaa gtgacctaat taacaggagg acacagaggg 2401 tggatgggca gcctatgatt ggaatgtcct ctcaagtaga ggaggttagg gtttatgagg 2461 acacagagga gcttcctggg gatccagaca tgataagata cattgatgag tttggacaaa 2521 ccacaactag aatgcagtga aaaaaatgct ttatttgtga aatttgtgat gctattgctt 2581 tatttgtaac cattataagc tgcaataaac aagttaacaa caacaattgc attcatttta 2641 tgtttcaggt tcagggggag gtggtttttt aaagcaagta aaacctctac agatgtgata 2701 tggctgatca tgaacagact gtgaggactg tgagggctga cgggcctgaa atgagccttg 2761 ggactgtgaa tcaatgcctg tttcatgccc tgagtcttcc atgttcttct ccccaccatc 2821 ttcattttta tcagcatttt cctggctgtc ttcatcatca tcatcactgt ttcttagcca 2881 atctaaaact ccagttccca tagccacatt aaacttcatt ttttgataca ctgacaaact 2941 aaactctttg tccaatctct ctttccactc cacaattctg ctctgaatac tttgagcaaa 3001 ctcagccaca ggtctgtacc aaattaacat aagaagcaaa gcaatgccac tttgaattat 3061 cctcttttct aacaaaaact cactgcgttc caggcaatgc tttaaataat ctttgggcct 3121 aaaatctatt tgttttacaa atctggcctg cagtgtttta ggcacactgt actcattcat 3181 ggtgactatt ccagggggaa atatttgagt tcttttattt aggtgtttct tttctaagtt 3241 taccttaaca ctgccatcca aataatccct taaattgtcc aggttattaa ttccctgacc 3301 tgaaggcaaa tctctggact cccctccagt gccctttaca tcctcaaaaa ctactaaaaa 3361 ctggtcaata gctactccta gctcaaagtt cagcctgtcc aagggcaaat taacatttaa 3421 agctttcccc ccacataatt caagcaaagc agctgctaat gtagttttac cactatcaat 3481 tggtccttta aacagccagt atcttttttt aggaatgttg tacaccatgc attttaaaaa 3541 gtcatacacc actgaatcca ttttgggcaa caaacagtgt agccaagcaa ctccagccat 3601 ccattcttct atgtcagcag agcctgtaga accaaacatt atatccatcc tatccaaaag 3661 atcattaaat ctgtttgtta acatttgttc tctagttagt tgtaggctat caacccgctt 3721 tttagctaaa acagtatcaa cagcctgttg gcatatggtt ttttggtttt tgctgtcagc 3781 aaatatagca gcatttgcat aatgcttttc atggtactta tagtggctgg gctgttcttt 3841 tttaatacat tttaaacaca tttcaaaact gtactgaaat tccaagtaca tcccaagcaa 3901 taacaacaca tcatcacatt ttgtttccat tgcatactct gttacaagct tccaggacac 3961 ttgtttagtt tcctctgctt cttctggatt aaaatcatgc tccttcaacc cacctggcaa 4021 actttcctca ataacagaaa atggatctct agtcaaggca ctatacatca aatattcctt 4081 attaacccct ttacaaatta aaaagctaaa ggtacacaat ttttgagcat agttattaat 4141 agcagacact ctatgcctgt gtggagtaag aaaaaacagt atgttatgat tataactgtt 4201 atgcctactt ataaaggtta cagaatattt ttccataatt ttcttgtata gcagtgcagc 4261 tttttccttt gtggtgtaaa tagcaaagca agcaagagtt ctattactaa acacagcatg 4321 actcaaaaaa cttagcaatt ctgaaggaaa gtccttgggg tcttctacct ttctcttctt 4381 ttttggagga gtagaatgtt gagagtcagc agtagcctca tcatcactag atggcatttc 4441 ttctgagcaa aacaggtttt cctcattaaa ggcattccac cactgctccc attcatcagt 4501 tccataggtt ggaatctaaa atacacaaac aattagaatc agtagtttaa cacattatac 4561 acttaaaaat tttatattta ccttagagct ttaaatctct gtaggtagtt tgtccaatta 4621 tgtcacacca cagaagtaag gttccttcac aaagatcaag tccaaaccac attctaaagc 4681 aatcgaagca gtagcaatca acccacacaa gtggatcttt cctgtacaat tttctatttt 4741 catgcttcat cctcagtaag cacagcaagc atatgcaatt agtagacatt ttctttgcac 4801 actcaggcca ttgtttgcag tatattgcat caacaccagg atttaaggaa gaagcaaata 4861 cctcagttgc atcccagaag cctccaaagt caggttgatg agcatatttt actccatctt 4921 ccattttctt gtacagagta ttcattttct tcattttttc ttcatctcct cctttatcag 4981 gatgaaactc cttgcatttt tttaaatatg cctttctcat cagaggaata ttcccccagg 5041 cactcctttc aagacctaga aggtccatta gctgcaaaga ttcctctctg tttaaaactt 5101 tatccatttt tgcaaagctt tttgcaaaag cctaggcctc caaaaaagcc tcctcactac 5161 ttctggaata gctcagaggc cgaggcg //