LOCUS EF579658 5165 bp DNA circular VRL 13-DEC-2007 DEFINITION Simian virus 40 isolate SV40(Ad)191, complete genome. ACCESSION EF579658 VERSION EF579658.1 KEYWORDS . SOURCE Betapolyomavirus macacae ORGANISM Betapolyomavirus macacae Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Betapolyomavirus. REFERENCE 1 (bases 1 to 5165) AUTHORS Peden,K., Sheng,L., Omeir,R., Yacobucci,M., Klutch,M., Laassri,M., Chumakov,K., Pal,A., Murata,H. and Lewis,A.M. Jr. TITLE Recovery of strains of the polyomavirus SV40 from rhesus monkey kidney cells dating from the 1950s to the early 1960s JOURNAL Virology 370 (1), 63-76 (2008) PUBMED 17900651 REFERENCE 2 (bases 1 to 5165) AUTHORS Peden,K., Sheng,L., Omeir,R., Yacobucci,M., Klutch,M., Laassri,M., Chumakov,K., Pal,A., Murata,H. and Lewis,A.M. Jr. TITLE Direct Submission JOURNAL Submitted (25-APR-2007) Division of Viral Products, CBER/FDA, 29 Lincoln Drive, Bethesda, MD 20892, USA FEATURES Location/Qualifiers source 1..5165 /organism="Betapolyomavirus macacae" /mol_type="genomic DNA" /isolate="SV40(Ad)191" /isolation_source="human adenovirus type 3 stock grown in primary rhesus monkey kidney cells" /db_xref="taxon:1891767" /geo_loc_name="USA" CDS 263..451 /codon_start=1 /product="agnoprotein" /protein_id="ABU86039.1" /translation="MVLRRLSRQASVKVRRSWTESKKTAQRLFVFVLELLLQFCEGED TVDGKRKKPERLTEKPES" gene 490..1548 /gene="vp2" CDS 490..1548 /gene="vp2" /codon_start=1 /product="VP2" /protein_id="ABU86040.1" /translation="MGAALTLLGDLIATVSEAAAATGFSVAEIAAGEAAAAIEVQLAS VATVEGLTTSEAIAAIGLTPQAYAVISGAPAAIAGFAALLQTVTGVSAVAQVGYRFFS DWDHKVSTVGLYQQPGMAVDLYRPDDYYDILFPGVQTFVHSVQYLDPRHWGPTLFNAI SQAFWRVIQNDIPRLTSQELERRTQRYLRDSLARFLEETTWTVINAPVNWYNSLQDYY STLSPIRPTMVRQVANREGLQISFGHTYDNIDEADSIQQVTERWEAQSQSPNVQSGEF IEKFEAPGGANQRTAPQWMLPLLLGLYGSVTSALKAYEDGPNKKKRKLSRGSSQKTKG TSASAKARHKRRNRSSRS" gene 844..1548 /gene="vp3" CDS 844..1548 /gene="vp3" /codon_start=1 /product="VP3" /protein_id="ABU86041.1" /translation="MAVDLYRPDDYYDILFPGVQTFVHSVQYLDPRHWGPTLFNAISQ AFWRVIQNDIPRLTSQELERRTQRYLRDSLARFLEETTWTVINAPVNWYNSLQDYYST LSPIRPTMVRQVANREGLQISFGHTYDNIDEADSIQQVTERWEAQSQSPNVQSGEFIE KFEAPGGANQRTAPQWMLPLLLGLYGSVTSALKAYEDGPNKKKRKLSRGSSQKTKGTS ASAKARHKRRNRSSRS" gene 1427..2521 /gene="vp1" CDS 1427..2521 /gene="vp1" /codon_start=1 /product="VP1" /protein_id="ABU86042.1" /translation="MKMAPTKRKGSCPGAAPKKPKEPVQVPKLVIKGGIEVLGVKTGV DSFTEVECFLNPQMGNPDEHQKGLSKSLAAEKQFTDDSPDKDQLPCYSVARIPLPNLN EDLTCGNILMWEAVTVKTEVIGVTAMLNLHSGTQKTHENGAGKPIQGSNFHFFAVGGE PLELQGVLANYRTKYPAQTVTPKNATVDSQQMNTDHKAVLDKDNAYPVECWVPDPSKN ENTRYFGTYTGGENVPPVLHITNTATTVLLDEQGVGPLCKADSLYVSAVDICGLFTNT SGTQQWKGLPRYFKITLRKRSVKNPYPISFLLSDLINRRTQRVDGQPMIGMSSQVEEV RVYEDTEELPGDPDMIRYIDEFGQTTTRMQ" CDS complement(join(2610..4493,4840..5085)) /codon_start=1 /product="large T antigen" /protein_id="ABU86043.1" /translation="MDKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD KGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEEN LFCSEEMPSSDDEATADSQHSTPPKKKRKVEDPKDFPSELLSFLSHAVFSNRTLACFA IYTTKEKAALLYKKIMEKYSVTFISRHNSYNHNILFFLTPHRHRVSAINNYAQKLCTF SFLICKGVNKEYLMYSALTRDPFSVIEESLPGGLKEHDFNPEEAEETKQVSWKLVTEY AMETKCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHEKHYANAAIFADSKNQK TICQQAVDTVLAKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVA WLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV NLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVN LEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEK RIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVAMGTG VLDWLRNSDNDDEDSQENADKNEDGVEKNMEDSGHETGIDSQSQGSFQAPQPSQSSQS VHDQPYHICRGFTCFKKPPTPPPEPET" CDS complement(4561..5085) /codon_start=1 /product="small T antigen" /protein_id="ABU86044.1" /translation="MDKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD KGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEVFASSLNPGVDAIYCKQWPE CAKKMSTNCICLLCLLRMKHENRKLYRKDPLVWVDCYCFDCFRMWFGLDLCEGTLLLW CDIIGQTTYRDLKL" BASE COUNT 1504 a 1080 c 1024 g 1557 t ORIGIN 1 gcctcggcct ctgcataaat aaaaaaaatt agtcagccat ggggcggaga atgggcggaa 61 ctgggcggag ttaggggcgg gatgggcgga gttaggggcg ggactatggt tgctgactaa 121 ttgagatgca tgctttgcat acttctgcct gctggggagc ctggggactt tccacaccct 181 aactgacaca cattccacag ctggttcttt ccgcctcaga aggtacctaa ccaagttcct 241 ctttcagagg ttatttcagg ccatggtgct gcgccggctg tcacgccagg cctccgttaa 301 ggttcgtagg tcatggactg aaagtaaaaa aacagctcaa cgcctttttg tgtttgtttt 361 agagcttttg ctgcaatttt gtgaagggga agatactgtt gacgggaaac gcaaaaaacc 421 agaaaggtta actgaaaaac cagaaagtta actggtaagt tgagtctttt tgtcttttat 481 ttcaggtcca tgggtgctgc tttaacactg ttgggggacc taattgctac tgtgtctgaa 541 gctgctgctg ctactggatt ttcagtagct gaaattgctg ctggagaggc cgctgctgca 601 attgaagtgc aacttgcatc tgttgctact gttgaaggcc taacaacctc tgaggcaata 661 gctgctatag gcctcactcc acaggcctat gctgtcatat ctggggctcc tgctgctata 721 gctggatttg cagctttact gcaaactgtg actggtgtga gcgctgttgc tcaagtgggg 781 tatagatttt ttagtgactg ggatcacaaa gtttctactg ttggtttata tcaacaacca 841 ggaatggctg tagatttgta taggccagat gattattatg atattttatt tcctggagta 901 caaacctttg ttcacagtgt tcaatatctt gaccccagac attggggtcc aacacttttt 961 aatgccattt ctcaagcttt ttggcgtgta atacaaaatg acattcctag gctcacctca 1021 caggagcttg aaagaagaac ccaaagatat ttaagggaca gtttggcaag gtttttagag 1081 gaaactactt ggacagtaat taatgctcct gttaattggt ataactcttt acaagattac 1141 tactctactt tgtctcccat taggcctaca atggtgagac aagtagccaa cagggaaggg 1201 ttgcaaatat catttgggca cacctatgat aatattgatg aagcagacag tattcagcaa 1261 gtaactgaga ggtgggaagc tcaaagccaa agtcctaatg tgcagtcagg tgaatttatt 1321 gaaaaatttg aggctcctgg tggtgcaaat caaagaactg ctcctcagtg gatgttgcct 1381 ttacttctag gcctgtacgg aagtgttact tctgctctaa aagcttatga agatggcccc 1441 aacaaaaaga aaaggaagtt gtccaggggc agctcccaaa aaaccaaagg aaccagtgca 1501 agtgccaaag ctcgtcataa aaggaggaat agaagttcta ggagttaaaa ctggagtaga 1561 cagcttcact gaggtggagt gctttttaaa tcctcaaatg ggcaatcctg atgaacatca 1621 aaaaggctta agtaaaagct tagcagctga aaaacagttt acagatgact ctccagacaa 1681 agaccaactg ccttgctaca gtgtggctag aattcctttg cctaatttaa atgaggactt 1741 aacctgtgga aatattttga tgtgggaagc tgttactgtt aaaactgagg ttattggggt 1801 aactgctatg ttaaacttgc attcagggac acaaaaaact catgaaaatg gtgctggaaa 1861 acccatacaa gggtcaaact ttcatttttt tgctgttggt ggggaacctt tggagctgca 1921 gggtgtgtta gcaaactaca ggaccaaata tcctgctcaa actgtaaccc ccaaaaatgc 1981 tacagttgac agtcagcaga tgaacactga ccacaaggct gttttggata aggataatgc 2041 ttatccagtg gagtgctggg ttcctgatcc aagtaaaaat gaaaacacta gatattttgg 2101 aacctacaca ggtggggaaa atgtgcctcc tgttttgcac attactaaca cagcaaccac 2161 agtgctgctt gatgagcagg gtgttgggcc cttgtgcaaa gctgacagct tgtatgtttc 2221 tgctgttgac atttgtgggc tgtttaccaa cacttctgga acacagcagt ggaagggact 2281 tcccagatat tttaaaatta cccttagaaa gcggtctgtg aaaaacccct acccaatttc 2341 ctttttgtta agtgacctaa ttaacaggag gacacagagg gtggatgggc agcctatgat 2401 tggaatgtcc tctcaagtag aggaggttag ggtttatgag gacacagagg agcttcctgg 2461 ggatccagac atgataagat acattgatga gtttggacaa accacaacaa gaatgcagtg 2521 aaaaaaatgc tttatttgtg aaatttgtga tgctttattt gtaaccatta taagctgcaa 2581 taaacaagtc aacaacaatt gcattcattt tatgtttcag gttcaggggg aggtgtggga 2641 ggttttttaa agcaagtaaa acctctacag atgtgatatg gctgatcatg aacagactgt 2701 gaggactgtg agggctgagg ggcctgaaat gagccttggg actgtgaatc aatgcctgtt 2761 tcatgccctg agtcttccat gttcttctcc acaccatctt catttttatc agcattttcc 2821 tggctgtctt catcatcatt atcactgttt cttagccaat ctaaaactcc agttcccata 2881 gccacattaa acttcatttt ttgatacact gacaaactaa actctttgtc caatctctct 2941 ttccactcca caattctgct ctgaatactt tgagcaaact cagccacagg tctgtaccaa 3001 attaacataa gaagcaaagc aatgccactt tgaattatcc tcttttctaa caaaaactca 3061 ctgcgttcca ggcaatgctt taaataatct ttgggcctaa aatctatttg ttttacaaat 3121 ctggcctgca gtgttttagg cacactgtac tcattcatgg tgactattcc agggggaaat 3181 atttgagttc ttttatttag gtgtttcttt tctaagttta ccttaacact gccatccaaa 3241 taatccctta aattgtccag gttattaatt ccctgacctg aaggcaaatc tctggactcc 3301 cctccagtgc cctttacatc ctcaaaaact actaaaaact ggtcaatagc tactcctagc 3361 tcaaagttca gcctgtccaa gggcaaatta acatttaaag ctttcccccc acataattca 3421 agcaaagcag ctgctaatgt agttttacca ctatcaattg gtcctttaaa cagccagtat 3481 ctttttttag gaatgttgta caccatgcat tttaaaaagt catacaccac tgaatccatt 3541 ttgggcaaca aacagtgtag ccaagcaact ccagccatcc attcttctat gtcagcagag 3601 cctgtagaac caaacattat atccatccta tccaaaagat cattaaatct gtttgttaac 3661 atttgttctc tagttagttg taggctatca acccgctttt tagctaaaac agtatcaaca 3721 gcctgttggc atatggtttt ttggtttttg ctgtcagcaa atatagcagc atttgcataa 3781 tgcttttcat ggtacttata gtggctgggc tgttcttttt taatacattt taaacacatt 3841 tcaaaactgt attgaaattc caagtacatc ccaagcaata acaacacatc atcacatttt 3901 gtttccattg catactctgt tacaagcttc caggacactt gtttagtttc ctctgcttct 3961 tctggattaa aatcatgctc ctttaaccca cctggcaaac tttcctcaat aacagaaaat 4021 ggatctctag tcaaggcact atacatcaaa tattccttat taaccccttt acaaattaaa 4081 aagctaaagg tacacaattt ttgagcatag ttattaatag cagacactct atgcctgtgt 4141 ggagtaagaa aaaacagtat gttatgatta taactgttat gcctacttat aaaggttaca 4201 gaatattttt ccataatttt cttgtataga agtgcagctt tttcctttgt ggtgtaaata 4261 gcaaagcaag caagagttct attactaaac acagcatgac tcaaaaaact tagcaattct 4321 gaaggaaagt ccttggggtc ttctaccttt ctcttctttt ttggaggagt agaatgttga 4381 gagtcagcag tagcctcatc atcactagat ggcatttctt ctgagcaaaa caggttttcc 4441 tcattaaagg cattccacca ctgctcccat tcatcagttc cataggttgg aatctaaaat 4501 acacaaacaa ttagaatcag tagtttaaca cattatacac ttaaaaattt tatatttacc 4561 ttagagcttt aaatctctgt aggtagtttg tccaattatg tcacaccaca gaagtaaggt 4621 tccttcacaa agatcaagtc caaaccacat tctaaagcaa tcgaagcagt agcaatcaac 4681 ccacacaagt ggatctttcc tgtataattt tctattttca tgcttcatcc tcagtaagca 4741 cagcaagcat atgcagttag tagacatttt ctttgcacac tcaggccatt gtttgcagta 4801 tattgcatca acaccaggat ttaaggaaga agcaaatacc tcagttgcat cccagaagcc 4861 tccaaagtca ggttgatgag catattttac tccatcttcc attttcttgt acagagtatt 4921 cattttcttc attttttctt catctcctcc tttatcagga tgaaactcct tgcatttttt 4981 taaatatgcc tttctcatca gaggaatatt cccccaggca ctcctttcaa gacctagaag 5041 gtccattagc tgcaaagatt cctctctgtt taaaacttta tccatctttg caaagctttt 5101 tgcaaaagcc taggcctcca aaaaagcctc ctcactactt ctggaatagc tcagaggccg 5161 aggcg //