LOCUS EF015496 2519 bp DNA linear BCT 26-MAR-2007 DEFINITION Acinetobacter baumannii isolate PW01c (A85) class 1 integron, partial sequence. ACCESSION EF015496 VERSION EF015496.1 KEYWORDS . SOURCE Acinetobacter baumannii ORGANISM Acinetobacter baumannii Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex. REFERENCE 1 (bases 1 to 2519) AUTHORS Valenzuela,J.K., Thomas,L., Partridge,S.R., van der Reijden,T., Dijkshoorn,L. and Iredell,J. TITLE Horizontal gene transfer in a polyclonal outbreak of carbapenem-resistant Acinetobacter baumannii JOURNAL J. Clin. Microbiol. 45 (2), 453-460 (2007) PUBMED 17108068 REFERENCE 2 (bases 1 to 2519) AUTHORS Valenzuela,J.K., Thomas,L.C., Partridge,S.R. and Iredell,J.R. TITLE Direct Submission JOURNAL Submitted (20-SEP-2006) Centre for Infectious Diseases and Microbiology, Institute of Clinical Pathology and Medical Research, Level 3 ICPMR Building, Westmead Hospital, Westmead, NSW 2145, Australia FEATURES Location/Qualifiers source 1..2519 /organism="Acinetobacter baumannii" /mol_type="genomic DNA" /isolate="PW01c (A85)" /db_xref="taxon:470" misc_recomb join(561..663,87..92) /gene="aacC1" /note="aacC1 59-base element; IntI-type integrase recombination site" misc_recomb join(1138..1201,664..669) /note="orfP 59-base element; IntI-type integrase recombination site" misc_recomb join(1538..1600,1202..1207) /note="orfQ 59-base element; IntI-type integrase recombination site" misc_recomb join(2403..2456,1601..1606) /note="aadA1 59-base element; IntI-type integrase recombination site" mobile_element <1..>2519 /mobile_element_type="integron:class 1 integron" misc_feature <1..86 /note="5'-conserved segment; 5'-CS" misc_recomb 12..95 /note="attI1; integron-associated recombination site recognized by IntI1; contains a 19 bp duplication compared with standard attI1" gene 33..663 /gene="aacC1" CDS 33..566 /gene="aacC1" /note="confers resistance to gentamicin; contains an N-terminal extension" /codon_start=1 /transl_table=11 /product="AAC(3)-Ia aminoglycoside (3) acetyltransferase" /protein_id="ABO42026.1" /translation="MLRSSNDVTQQGSRPKTKLGGSSMGIIRTCRLGPDQVKSMRAAL DLFGREFGDVATYSQHQPDSDYLGNLLRSKTFIALAAFDQEAVVGALAAYVLPKFEQA RSEIYIYDLAVSGEHRRQGIATALINLLKHEANALGAYVIYVQADYGDDPAVALYTKL GIREEVMHFDIDPSTAT" misc_feature 87..663 /gene="aacC1" /note="aacC1 gene cassette" misc_feature 664..1201 /note="orfP gene cassette (also known as orfX and orfXA)" gene 685..1197 /gene="orfP" CDS 685..1197 /gene="orfP" /codon_start=1 /transl_table=11 /product="unknown" /protein_id="ABO42027.1" /translation="MNVRTCTESDVASIAVVFTESIHVLGASHYDASQRNAWAPRPAD IEAWSARLSGLQTLLAIEGDAVIGFISYELSGHIEFLYTAPGSERRGVASVLYREVEK ALPGVSLFTEASLVAKPFFLRHGFSVVEEQNVSRGGVMFRRYAMRKAVVAQHGAQADR PALRAVRRLS" misc_feature 1202..1600 /note="orfQ gene cassette (also known as orfX', orfXB and orfY)" gene 1213..1518 /gene="orfQ" CDS 1213..1518 /gene="orfQ" /codon_start=1 /transl_table=11 /product="unknown" /protein_id="ABO42028.1" /translation="MNCARCGRQNFVDAHRCAHCGHHFFDGSDVVNLLDKAQKRTWLR PRNIAIFLAAWALLVVEIVTYAGKAPSSPQGWAALILLGPIVYVVLATCADTIFRKP" misc_feature 1601..2456 /note="aadA1 gene cassette" gene 1610..2401 /gene="aadA1" CDS 1610..2401 /gene="aadA1" /note="confers resistance to spectinomycin and streptomycin" /codon_start=1 /transl_table=11 /product="AadA1 aminoglycoside (3'') (9) adenylyltransferase" /protein_id="ABO42029.1" /translation="MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKP HSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYP AKRELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQ DLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPA QYQPVILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK" misc_feature 2457..>2519 /note="3'-conserved segment; 3'-CS" BASE COUNT 577 a 668 c 686 g 588 t ORIGIN 1 gggtcgatgt ttgatgttat ggagcagcaa cgatgttacg cagcagcaac gatgttacgc 61 agcagggcag tcgccctaaa acaaagttag gtggctcaag tatgggcatc attcgcacat 121 gtaggctcgg ccctgaccaa gtcaaatcca tgagggctgc tcttgatctt ttcggtcgtg 181 agttcggaga cgtagccacc tactcccaac atcagccgga ctccgattac ctcgggaact 241 tgctccgtag taagacattc atcgcgcttg ctgccttcga ccaagaagcg gttgttggcg 301 ctctcgcggc ttacgttctg ccaaagtttg agcaggcgcg tagtgagatc tatatctatg 361 atctcgcagt ctccggcgag caccggaggc aaggcattgc caccgcgctc atcaatctcc 421 tcaagcatga ggccaacgcg cttggtgctt atgtgatcta cgtgcaagca gattacggtg 481 acgatcccgc agtggctctc tatacaaagt tgggcatacg ggaagaagtg atgcactttg 541 atatcgaccc aagtaccgcc acctaacaat tcgttcaagc cgagatcgct tcgcggccgc 601 ggagttgttc ggaaaaattg tcacaacgcc gcggccgcaa agcgctccgg cttaactcag 661 gcgttgggca acaagaaaac cgatatgaac gtacgcactt gcactgaatc tgacgtcgcc 721 tctatcgcag tcgtatttac tgagtctatt catgtacttg gagcgtctca ctatgacgct 781 tcgcaaagga atgcgtgggc accgcgtccc gcagatatag aggcttggtc agctcgctta 841 tctggcctac agactcttct agcaattgag ggagatgcgg ttatcgggtt catctcttac 901 gagcttagcg gccacatcga gtttctttac accgcaccgg gttccgagcg tcggggcgtc 961 gcgtctgttc tgtaccgtga ggttgagaaa gccctcccag gtgtttcgct cttcacagaa 1021 gccagtctgg tcgccaagcc ctttttcctg cggcatggtt tcagtgtagt tgaggagcaa 1081 aatgtctccc gtggaggcgt catgttccgt aggtatgcaa tgcgcaaggc agttgtcgcc 1141 caacatggcg ctcaagccga ccggccagcc ctgcgggctg tccgtcggct tagctagggc 1201 gttagagcaa aaatgaactg cgcacgctgt ggccgccaga atttcgtaga tgcacatcgt 1261 tgcgctcact gcggccacca cttctttgac ggtagtgacg tggtgaatct tctagacaag 1321 gctcagaagc gcacttggtt aaggccgcga aacatcgcca tattccttgc ggcctgggcg 1381 ctactggtgg tggagatcgt cacctacgcg ggtaaagcgc caagttctcc tcagggctgg 1441 gcggcgctca tactgctcgg gcctattgtg tacgtcgtac tagcaacctg tgcagataca 1501 atttttcgaa agccatgaat acagtaaatc gctcatgctc taaccaatgc ttccagccga 1561 cgctacggcc ttacggcctc cgcgcgtctg aagctgggcg ttaaacatca tgagggaagc 1621 ggtgatcgcc gaagtatcga ctcaactatc agaggtagtt ggcgtcatcg agcgccatct 1681 cgaaccgacg ttgctggccg tacatttgta cggctccgca gtggatggcg gcctgaagcc 1741 acacagtgat attgatttgc tggttacggt gaccgtaagg cttgatgaaa caacgcggcg 1801 agctttgatc aacgaccttt tggaaacttc ggcttcccct ggagagagcg agattctccg 1861 cgctgtagaa gtcaccattg ttgtgcacga cgacatcatt ccgtggcgtt atccagctaa 1921 gcgcgaactg caatttggag aatggcagcg caatgacatt cttgcaggta tcttcgagcc 1981 agccacgatc gacattgatc tggctatctt gctgacaaaa gcaagagaac atagcgttgc 2041 cttggtaggt ccagcggcgg aggaactctt tgatccggtt cctgaacagg atctatttga 2101 ggcgctaaat gaaaccttaa cgctatggaa ctcgccgccc gactgggctg gcgatgagcg 2161 aaatgtagtg cttacgttgt cccgcatttg gtacagcgca gtaaccggca aaatcgcgcc 2221 gaaggatgtc gctgccgact gggcaatgga gcgcctgccg gcccagtatc agcccgtcat 2281 acttgaagct agacaggctt atcttggaca agaagaagat cgcttggcct cgcgcgcaga 2341 tcagttggaa gaatttgtcc actacgtgaa aggcgagatc accaaggtag tcggcaaata 2401 atgtctaaca attcgttcaa gccgacgccg cttcgcggcg cggcttaact caagcgttag 2461 atgcactaag cacataattg ctcacagcca aactatcagg tcaatctgct ttatattaa //