LOCUS DUAZ01000121 5721 bp DNA linear ENV 04-MAY-2020 DEFINITION MAG TPA_asm: Candidatus Zixiibacteriota bacterium isolate UWMA-0288 NODE_17941_length_5721_cov_0.065635, whole genome shotgun sequence. ACCESSION DUAZ01000121 DUAZ01000000 VERSION DUAZ01000121.1 DBLINK BioProject: PRJNA522654 BioSample: SAMN10967624 Sequence Read Archive: SRR8625994 KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA; TPA:assembly. SOURCE Candidatus Zixiibacteriota bacterium (marine metagenome) ORGANISM Candidatus Zixiibacteriota bacterium Bacteria. REFERENCE 1 (bases 1 to 5721) AUTHORS Zhou,Z., Tran,P.Q., Kieft,K. and Anantharaman,K. TITLE Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation JOURNAL bioRxivorg, doi 10.1101/814418 (2019) REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5721) AUTHORS Zhou,Z. TITLE Direct Submission JOURNAL Submitted (12-MAR-2019) Department of Bacteriology, University of Wisconsin-Madison, 4545 Microbial Sciences Building, 1550 Linden Drive, Madison, WI 53706, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.12.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 0.7x Sequencing Technology :: Illumina HiSeq 2000 ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/21/2019 01:59:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,611 CDSs (total) :: 4,569 Genes (coding) :: 4,300 CDSs (with protein) :: 4,300 Genes (RNA) :: 42 rRNAs :: 1, 1 (5S, 23S) complete rRNAs :: 1 (5S) partial rRNAs :: 1 (23S) tRNAs :: 37 ncRNAs :: 3 Pseudo Genes (total) :: 269 CDSs (without protein) :: 269 Pseudo Genes (ambiguous residues) :: 198 of 269 Pseudo Genes (frameshifted) :: 60 of 269 Pseudo Genes (incomplete) :: 38 of 269 Pseudo Genes (internal stop) :: 12 of 269 Pseudo Genes (multiple problems) :: 38 of 269 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5721 /organism="Candidatus Zixiibacteriota bacterium" /mol_type="genomic DNA" /submitter_seqid="NODE_17941_length_5721_cov_0.065635" /isolate="UWMA-0288" /isolation_source="Guaymas Basin Hydrothermal plume metagenome" /db_xref="taxon:2053527" /environmental_sample /geo_loc_name="USA: Guaymas Basin" /lat_lon="27.51583333 N 111.425 W" /collection_date="2004-07-11" /metagenome_source="marine metagenome" /note="metagenomic" gene complement(<1..1298) /locus_tag="EYQ20_05415" CDS complement(<1..1298) /locus_tag="EYQ20_05415" /inference="COORDINATES: protein motif:HMM:PF01432.18" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="HIG45873.1" /translation="MEEGAVSVLSAEITKIHVDIHRALKTVSDEVFNSFTDRPPLKDT GHYLSRIKRQAQYTMSPCEEVLTADLGVNGIEAWGRLYDSISGKLEFEMTYPDGRTER LSMSRRRSLMGHSDRRIRIAAFEAGNAAWAQVESVPEAALNAIGGTRLTLNKYRGVDH FLDIALFQAGIMRETLDAMFDAIYSEIDVARNILKSKAGHMNQDCLAWYDFSAPMPIK DQANVSWEEGKSLVKKAFGQSYPDLATYVQSVYDKSWIDWSPRPGKRPGAFCTGSPLS KESRVYMTYNDTMGDVLTLAHELGHAFHGHTMGSARTLARSYPMTLAESASTFGEMLL MRGLLDEPAISNELKAFILNLEISHAAVYLLDIPVRFEFEKAFYEERAEGEIVVSRLK ELMVETQRRVVGDVLEDGGEDPYFWASKLHFYITGVTFYN" assembly_gap 1331..1404 /estimated_length=74 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(1697..3244) /locus_tag="EYQ20_05420" CDS complement(1697..3244) /locus_tag="EYQ20_05420" /inference="COORDINATES: protein motif:HMM:PF07969.9" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="HIG45874.1" /translation="MDFDFIIQGGEVVDGTGKTGRYRADVGIKDGSVAALGDLSPAEA ASVIDATGQIVCPGFIDVHVHSENTLLGGRDQMAGIRQGITTQLLAPDGFGWAGITAE EAMPLWQYTQFAYGEPQNPVDWPTIDSYLSLFPGRSPANVCPQVPHCAVRVKAMGWAA RPATSDEIKVMEDETRAWMEAGAGCLCLGLDYQPSANASFEELVALCKVAKEYDGIYA AHLRYQIHGRPKAWQELIDLNRATGIPVHASHERVDDITGPILDQADADDIDISFESY LYPAGMTHITMQLPMWVQSGSPDEVLERMKQRDTREKTLDYLRQTKTLSDRNLVGYTK TGRYTGMTLGEAARSENKPNEEFAYDLVIEEEGIQAFVVFWPSPEEENEKTLSRTSNH PRMMVASDGVYDCPHPHPRGHGCFSRMLRKFVREQKTVSLEEAIYKMSGYPADRYRLR DRGKLGEGLPADVVVFHADIVADKSTFESPIQYPAGVPFVFVNGTLVINKGEPTADRP GQVLRRN" gene complement(3367..4281) /locus_tag="EYQ20_05425" CDS complement(3367..4281) /locus_tag="EYQ20_05425" /inference="COORDINATES: protein motif:HMM:PF08450.10" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="SMP-30/gluconolactonase/LRE family protein" /protein_id="HIG45875.1" /translation="MMATIEKIAEVNAIVGEGPIWDIENQRLLWTDIRTGRLFQYAPD VDKYEQIHDGFFVGGFALNKPGGIAACIWDGIVLWHSDDDWVRIVDESFEGHQLRFND ITADPAGRIFGGTMIDDGLGKLYRFDPDGHIEIVEEGVGCSNGMGYSPDKKTMYYTDS AVRTIYTYDYNLDTGAISNRKDLIKIDDTDGVPDGMTVDSEGYIWTAVWFSGCVIRID PDGKEERRIALPASQTSSLMFGGPDLTDIYVTTADFNVDPGGPLDPAGYDWEAYKKGY RGGGLFRIRQDIKGMPENKADFTWPVKG" gene complement(4375..4641) /locus_tag="EYQ20_05430" CDS complement(4375..4641) /locus_tag="EYQ20_05430" /inference="COORDINATES: protein motif:HMM:PF01135.17" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="HIG45876.1" /translation="MVGWWSATASFDAVIVTADPETISPQLVKQLRSDGRMVVPVAVY DQYLYVVQKTENGVKRDQQTAVRFVPLLDSGCSSNRRRIFCLQL" gene complement(4688..4999) /locus_tag="EYQ20_05435" CDS complement(4688..4999) /locus_tag="EYQ20_05435" /inference="COORDINATES: protein motif:HMM:PF01135.17" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="HIG45877.1" /translation="MTPQERMIEEQIKGRGINSPDLLNAFSQVPRQRFVPDGYRSRAY EDAALTVGYDQTISQPYMVGLMTSLLNLREDDGVLEVGTGPGYQAAWPDGSAPLRSMP N" gene complement(5045..>5721) /locus_tag="EYQ20_05440" CDS complement(5045..>5721) /locus_tag="EYQ20_05440" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_020381508.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=3 /transl_table=11 /product="phytanoyl-CoA dioxygenase family protein" /protein_id="HIG45878.1" /translation="GDSGQETTMPPQISPEDAQVFTQCLRLADTHDGMHDLVFDHRLG EMGAKLAGIDGIRIWHDQALIKPPHGNHTAWHLDDPYWSFDSRDAISMWIALDDATLE NGCLWYLPGTHKLASYKNVGIGENLADIFKVYPEWKMIEPVPGPCPAGSVVWHNGLVA HAAGPNMTIRHRRAMTCAFMPDGSIFNGKKNILPDDYFESLTIGETLDNDDWNALVWH KSQAYI" BASE COUNT 1407 a 1510 c 1256 g 1474 t ORIGIN 1 aaattataaa acgtaacacc tgtgatataa aaatgaagct ttgacgccca gaaataggga 61 tcttctcccc cgtcttccaa cacgtcaccg accacgcggc gttgtgtttc caccataagt 121 tcctttaatc ggcttacgac aatctcaccc tcggctcgtt cttcatagaa ggccttttca 181 aactcaaatc ggacggggat gtccagtaga taaacggctg catggctgat ttcgagattt 241 aatataaagg ctttaagctc attactgatg gccggttcat cgagcaaacc tctcatcagc 301 agcatctcac cgaaggtcga agcagattcc gccagggtca tcggataaga cctggccagg 361 gtgcgggcag agcccatggt atgcccgtga aaagcatgcc ccaactcatg ggcaagcgtc 421 aacacatcgc ccatcgtatc attataggtc atatacacgc gagactcctt cgacaaaggc 481 gatcccgtgc agaaggcccc agggcgtttt cctggccttg gtgaccagtc tatccatgat 541 ttatcatata cggactggac atatgttgcc aggtcaggat aggattgtcc aaatgctttt 601 ttcaccaggg attttccttc ttcccatgat acattggcct gatcctttat cggcataggg 661 gccgaaaaat cgtaccaggc cagacagtct tggttcatat gtccggcttt ggatttaagg 721 atgtttctcg ccacatcgat ctcagagtat atggcgtcga acatcgcgtc aagcgtctcc 781 cgcattatcc ccgcttgaaa gagggcaata tccagaaaat gatccacacc tcggtattta 841 ttgagcgtta atcgggttcc acctatggca ttgagggctg cctcaggaac tgactcaacc 901 tgcgcccagg ctgcattacc cgcttcaaag gcggcgatcc gaatgcgacg gtcgctgtgt 961 cccatcagcg aacgacgccg agacatggaa aggcgctccg ttcttccatc cgggtaggtc 1021 atctcaaatt ctaacttacc agagattgaa tcatataatc taccccatgc ctcaataccg 1081 ttcacgccca gatctgccgt taacacctct tcacacgggg acatggtata ctgagcctga 1141 cgttttatac gggaaagata atgccctgta tctttaagtg gtggtcgatc ggtaaacgag 1201 ttaaaaacct cgtctgaaac ggtttttaat gctctgtgta tatcaacatg tattttggtg 1261 atttcggcag acagtacact tactgcacct tcttccattg aataggcttc attatgtgca 1321 tttgcagagg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1381 nnnnnnnnnn nnnnnnnnnn nnnnaacaga ttcccatgcc gatagatttt tattattcag 1441 atcttctaat gtggaagcgg tctgttgcac accggcgata tcgtctttta atcgggcctt 1501 gaatgaagtc atgtcttccc cgttgaaaga cgaaaaatag gaagacaggt cccaatccat 1561 ggtcttttct gtcatacata acctcgagta tcagaatacc gcttgttgaa ttatgagtga 1621 taaaaatata ctttttaggc ggttttaaaa taatgtacat ggtctattac ataatagttt 1681 gtacaatttg atcctgtcag tttcgccgca atacctgacc tgggcgatcg gctgtcggct 1741 cccctttatt tattaccaaa gttccgttta caaaaacgaa cggcaccccg gccggatact 1801 gaataggcga ctcaaacgtg gatttatcgg ccacaatatc cgcgtggaag acgacgacat 1861 ccgcaggaag cccctcaccc aatttgcccc tgtcccttaa acgatatcgg tcggcaggat 1921 aaccactcat tttgtatatt gcttcttcga gagacaccgt tttttgttcc cggacaaatt 1981 tacgtaacat acgggaaaag cacccatggc cccgtgggtg cggatgcgga caatcatata 2041 cgccgtcgct ggctaccatc atcctcggat ggtttgaggt cctgctcaac gttttttcat 2101 tttcttcttc aggggacggc cagaagacaa cgaaggcttg tatgccctcc tcttcgatga 2161 ccagatcgta ggcgaactct tcattgggtt tattttcact gcgggctgct tcaccgagcg 2221 tcattcctgt atacctgccc gtctttgtat aacctaccag attacgatca gagagggttt 2281 ttgtctgcct cagatagtcc agcgtctttt ctcgcgtatc cctttgtttc attctttcca 2341 gcacctcatc agggctgccg ctctgtaccc acatagggag ttgcatggta atatgggtca 2401 tgcccgcagg atataaatag gattcgaaag aaatatctat atcatccgca tccgcctgat 2461 caagaattgg tccggtgatg tcatcaaccc gctcatgaga tgcatggaca ggaatccccg 2521 tcgctctatt cagatcgata agttcctgcc aggcttttgg acgaccatga atctggtatc 2581 tgagatgagc ggcatagatc ccatcatatt ctttagctac cttgcacagc gcgaccagtt 2641 cttcaaatga tgcgttggcg ctgggctggt agtccagccc caaacacaaa cacccggcgc 2701 cggcttccat ccaggctctt gtttcatctt ccatgacctt tatttcatca gaagtcgccg 2761 gtcttgccgc ccatcccatg gctttaacgc gcactgcgca atgggggact tgaggacaaa 2821 catttgcagg ggaacgaccg gggaagagac tcaggtagga atcaatcgtc ggccaatcaa 2881 cgggattttg cggttcacca taagcgaact gcgtatactg ccacaggggc atcgcctcct 2941 cggcggtaat acctgcccaa ccgaatccat caggtgcaag gagttgtgtg gttatccctt 3001 gccggatacc ggccatttga tcccgaccgc ccaacaaagt gttttccgaa tggacatgga 3061 catctataaa tccgggacag acgatctgtc ctgttgcatc aataactgag gctgcctccg 3121 ctggcgatag gtcgcccagt gcagccacgc taccatcttt tattccgaca tcagccctgt 3181 accgaccagt tttaccggtc ccgtcgacca cctcaccacc ctgaataata aaatcaaaat 3241 ccatgtaact ctcctgaaag gtgtaaccac caattgctac aaggagcggc tcctgccacg 3301 aaaaatgtct tcatggaaaa gggtgacagc tcgcgtctgc gagggaacgg tatacctacg 3361 tccccactac cctttaaccg gccaggtgaa gtctgcttta ttttccggca tgcctttaat 3421 atcctgccga attcggaata agcccccgcc gcgatatcct ttcttatagg cctcccaatc 3481 atatcccgct ggatcaagcg gtccacccgg atctacgttg aaatcggctg tagttacgta 3541 aatatccgtc aggtcaggcc cgccaaacat caaacttgag gtctgtgatg ctggtaaggc 3601 gatacgccgc tcttccttac cgtccggatc aattcgaatg acacaaccgc tgaaccatac 3661 cgccgtccag atatatccct ctgaatcgac cgtcatccca tccggtacgc catctgtgtc 3721 atcgatctta atcaaatctt tacggttcga tatagcgccg gtatccagat tataatcata 3781 cgtataaatt gtacgcacgg ctgagtcggt atagtacatg gtcttcttat caggggaata 3841 tcccattccg ttactgcaac cgaccccctc ttcgacaatt tcaatatgac catcggggtc 3901 aaatcggtac aactttccca gcccatcgtc tatcatcgtg ccgccgaata tccgaccagc 3961 cggatcagcg gttatatcat taaaccgtaa ctgatggccc tcaaaggact catccacgat 4021 gcgaacccag tcgtcatccg aatgccataa aacgattcca tcccagatac aggcggcgat 4081 accccccggt ttattcaacg caaaaccgcc gacgaaaaat ccgtcatgga tttgctcata 4141 cttgtccaca tcaggggcat attggaacaa tctaccggtt cgaatatcgg tccagagcag 4201 tcgttgattt tctatatccc agatagggcc ttcaccaacg atcgcgttga cttccgcaat 4261 cttttctatc gtcgccatca tataattctc cggtggtcaa ggtggtgtga atatgaaagg 4321 ttctatagca tatatggtag gggatgtata gtcaagcgtg atgcgaggta aatttcagag 4381 ctgtaagcaa aaaatccttc ttctattcga tgagcatcct gaatccagca gaggaacaaa 4441 acgtacggcg gtctgttgat cgcgttttac accattttct gttttttgca caacatataa 4501 atactgatca tagacggcta ccgggacaac catacgcccg tcgcttcgca actgcttcac 4561 gagttgtggc gaaatggttt cagggtcagc ggtaacgatg acggcatcaa aagatgccgt 4621 ggccgaccac caaccgacca tcgccgactt caaactgtat atcgaaggat aatccgggct 4681 ctatcgctca attgggcatc gatctcaatg gtgcagaccc atctggccac gccgcctgat 4741 atccgggtcc ggttcctacc tcgaggacac catcgtcttc cctgaggttt aacaacgagg 4801 tcattaaacc caccatatag ggctgcgata tggtttgatc gtaaccaacc gtcagggccg 4861 cgtcttcata ggcgcgagat cggtatccat cggggacaaa ccgttgtcgc ggaacttgtg 4921 aaaaagcgtt caggaggtca ggactattta taccccggcc cttaatctgt tcctcaatca 4981 tccgttcctg aggggtcatg atagactcta ttttcttata taccgttgca acgccatttc 5041 tttcttatat gtacgcctgc gatttatgcc agaccagggc attccaatca tcattatcaa 5101 gcgtttcgcc gatcgtcaag gattcaaaat aatcatccgg taaaatattc tttttaccat 5161 taaatattga tccatccggc atgaaggcac acgtcatcgc ccgccgatgt cgaatggtca 5221 tattcggccc tgccgcgtgg gcgacgaggc cattgtgcca gacgactgac ccggcaggac 5281 aggggcccgg tacgggttcg atcattttcc attcaggata aaccttgaaa atgtctgcca 5341 gattttcccc gatgccgaca tttttataag atgcaagttt atgagtgccc ggtagatacc 5401 agagacaccc attttcaagc gttgcatcat ccaatgcgat ccacatggaa atagcatctc 5461 gcgagtcgaa cgaccagtat ggatcatcca gatgccaggc ggtgtggttg ccatgtggcg 5521 gttttatcaa ggcctggtca tgccatattc ttatcccgtc aatacccgct aatttcgcgc 5581 ccatttcacc taatctgtga tcaaaaacaa ggtcgtgcat cccatcatgc gtatccgcca 5641 atcgtaaaca ttgggtaaaa acctgggcat cttccgggct aatttgtgga ggcatagttg 5701 tttcttggcc agagtcacct g //