LOCUS DS268496 273340 bp DNA linear CON 11-OCT-2010 DEFINITION Caenorhabditis remanei Scfld02_89 genomic scaffold, whole genome shotgun sequence. ACCESSION DS268496 AAGD02000000 VERSION DS268496.1 DBLINK BioProject: PRJNA12588 BioSample: SAMN00627085 KEYWORDS WGS. SOURCE Caenorhabditis remanei ORGANISM Caenorhabditis remanei Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 273340) AUTHORS Wilson,R.K. CONSRTM The Caenorhabditis remanei Sequencing Consortium TITLE PCAP assembly of the Caenorhabditis remanei genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 273340) AUTHORS Wilson,R.K. CONSRTM The Caenorhabditis remanei Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (17-JUL-2007) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT The organism is Caenorhabditis remanei Sudhaus, 1974; strain PB4641. This strain is derived from the wild isolate EM464. It was inbred in Scott Baird's laboratory for 20 generations by transferring one gravid female per generation. The strain EM464 was established with individuals collected from a pillbug (Armadillidium vulgare) in Brooklyn, New York, NY, USA in June 1990 by Scott Baird. EM464 was described as /Caenorhabditis vulgaris/Baird, Fitch & Emmons, 1994, which was later shown to be a junior synonym of C. remanei (Sudhaus & Kiontke 1996). Annotation was added to the scaffolds in October 2010. FEATURES Location/Qualifiers source 1..273340 /organism="Caenorhabditis remanei" /mol_type="genomic DNA" /strain="PB4641" /db_xref="taxon:31234" gene <1473..>2228 /locus_tag="CRE_30045" /db_xref="WormBase:WBGene00057115" mRNA <1473..>2228 /locus_tag="CRE_30045" /product="hypothetical protein" /db_xref="WormBase:CRE30045" /db_xref="WormBase:WBGene00057115" CDS 1473..2228 /locus_tag="CRE_30045" /note="contains similarity to Interpro domains IPR015706 (RNA-directed DNA polymerase (reverse transcriptase), related), IPR003286 (Nematode reverse transcriptase-like)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12041.1" /db_xref="InterPro:IPR003286" /db_xref="InterPro:IPR015706" /db_xref="WormBase:CRE30045" /db_xref="WormBase:WBGene00057115" /translation="MDVAPEKCNIIKFSHLKSNSNPIANCAVFNGANIPPVTQIRDLG IIFSGNLVFNAHINTIVGNAQRRINVLFNILKHAPLEIFLKCFIIYARPLLEYGSVVF SPVLKELVRKIENVQKSFIYRCYKKFGKVYNGYFNAIQECGFESLEYRRLLADLSFIY KCLVTKDVEMPNHLFYTYPKLSHLRRHKYYVRTTLPNKYKCFSQYLSIRSLACWNSLP ESIFISIPTPDCFRTRLRALPLQNYLTLSDLNY" gap 6227..6236 /estimated_length=10 gene <9425..>10407 /locus_tag="CRE_30046" /db_xref="WormBase:WBGene00057114" mRNA join(<9425..9556,9850..10056,10261..>10407) /locus_tag="CRE_30046" /product="hypothetical protein" /db_xref="WormBase:CRE30046" /db_xref="WormBase:WBGene00057114" CDS join(9425..9556,9850..10056,10261..10407) /locus_tag="CRE_30046" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12089.1" /db_xref="WormBase:CRE30046" /db_xref="WormBase:WBGene00057114" /translation="MSSLSRNYFTLLLALFILPLAVLCHGLEDYRPEEGLTGHNGVFQ ALPWTKYELSLISSLHATANYPEVMKMVREKLVITDVAPNDRRKIERMLKSLRPPPVF NDFLNAEEAEEVRKAHSEKNIGDVLYVIGRKLAELPDFLRDQAVTYLTKHTPTIQPPD F" gene complement(<19631..>23985) /gene="Cre-nhr-64" /locus_tag="CRE_30089" /db_xref="WormBase:WBGene00057112" mRNA complement(join(<19631..19882,20494..20549,20600..20706, 20782..21063,21558..21741,22166..22240,23844..>23985)) /gene="Cre-nhr-64" /locus_tag="CRE_30089" /product="CRE-NHR-64 protein" /db_xref="WormBase:WBGene00057112" CDS complement(join(19631..19882,20494..20549,20600..20706, 20782..21063,21558..21741,22166..22240,23844..23985)) /gene="Cre-nhr-64" /locus_tag="CRE_30089" /note="contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core), IPR000003 ()" /codon_start=1 /product="CRE-NHR-64 protein" /protein_id="EFP12067.1" /db_xref="InterPro:IPR000003" /db_xref="InterPro:IPR000324" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR001723" /db_xref="InterPro:IPR008946" /db_xref="InterPro:IPR013088" /db_xref="PFAM:PF00104" /db_xref="PFAM:PF00105" /db_xref="WormBase:CRE30089" /db_xref="WormBase:WBGene00057112" /translation="MTPTDKEATSSSPTSQSPQSFENVFCAICGDKATGKHYGALSCD GCKGFFRRTIRKRHSYICRFGEKCQMDKAKRNSCRKCRFDVCLRKGMRRDAVQTERDR IRPLNAMLNGTSGDDPFLDTLIRAEQSTRGLRTTVITKTAEARKQATTVDVTDSMNQQ LTLMVEWAKVLDGFQRVDSATQVALLRNFSAQHLVMCAAFRSIHLSDAVWLTNETCLH KDSPKIPDMNRVAARIIDQVTTPMRQLHINEIEYIALKAIAFFDPLAKGISSESYSDV EDMRQKVLESFERHVRFVSPYKDMPLRFANLLLLLPPMLAISRDLVEDVQLAKLFGLA SIDHLMLELMLPNEKNANDNNTTQSPLTCQK" gene <27885..>29644 /gene="Cre-riok-1" /locus_tag="CRE_30047" /db_xref="WormBase:WBGene00057111" mRNA join(<27885..27999,28048..28227,28310..28598,28650..29069, 29116..>29644) /gene="Cre-riok-1" /locus_tag="CRE_30047" /product="CRE-RIOK-1 protein" /db_xref="WormBase:WBGene00057111" CDS join(27885..27999,28048..28227,28310..28598,28650..29069, 29116..29644) /gene="Cre-riok-1" /locus_tag="CRE_30047" /note="contains similarity to Pfam domain PF01163 RIO1 family; contains similarity to Interpro domains IPR000687 (RIO kinase), IPR017407 (Serine/threonine-protein kinase Rio1); coded for by the following C. remanei cDNAs: DR776042" /codon_start=1 /product="CRE-RIOK-1 protein" /protein_id="EFP12083.1" /db_xref="InterPro:IPR000687" /db_xref="InterPro:IPR017407" /db_xref="PFAM:PF01163" /db_xref="WormBase:CRE30047" /db_xref="WormBase:WBGene00057111" /translation="MDRIEQLNLNIQNILDDVDIDPAETESSSEDEEEVVIEDKKIAE KIPEVSEEPEYSESDYEDDNDIVDFAEATGDFTKKLNAARTHAIGPNAARNRLTVDVE RHADTNEDRKRKRVKDRADRATVEQVLDPRTRLVLFRLLQRGTLLNIDGCISTGKEAN VYHATGTENDLAVKIYKTSILTFKDRERYVTGEFRYRHGYCKSNPRKMVAVWAEKEMR NLARMHEVGLPVPKPHMLKGHVLVMDFLGKDGWPAPLLKNANLSTEDAEPMYVGLIRD MRRLYRECKLVHADLSEFNMLVHDGKLWIIDVSQSVEQDHPHALEFLRMDCNNVNKFF RELGVKVLSVRRLFEVIVDPLMNSKEMETIIEEERVLVNSEDDTLFMNAFIPHKLEHV LHFERDGKLAKDGIEANNPFQNIVSKIDLKGNGFGEEGSCSDDDDGENEKKSRKKRAE PTEEEIEEKERKIAMHTRNRDETAEERKLRKAAVKEEKRDQRKEKTPKHVKKRAHRQH MK" gene <31042..>34457 /locus_tag="CRE_30048" /db_xref="WormBase:WBGene00057110" mRNA join(<31042..31056,31102..31208,31403..31682,31916..32225, 32270..32988,33039..33429,34273..>34457) /locus_tag="CRE_30048" /product="hypothetical protein" /db_xref="WormBase:CRE30048" /db_xref="WormBase:WBGene00057110" CDS join(31042..31056,31102..31208,31403..31682,31916..32225, 32270..32988,33039..33429,34273..34457) /locus_tag="CRE_30048" /note="contains similarity to Vanderwaltozyma polyspora Putative uncharacterized protein.; TR:A7TJN8; coded for by the following C. remanei cDNAs: DT935961" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12065.1" /db_xref="WormBase:CRE30048" /db_xref="WormBase:WBGene00057110" /translation="MDSDEVRKRKEYAERKVKERHAALRKEAGERRKQTLEHRERVQS VLKREQVLLQKRMQQLNEDEERKKATLAKQHEATSRTAAINKSSPKSFAFGSSTPRTL AYLDNLPKSEQQYDKKLRPLEDSSQLTSPTSTSSSTKFGRTTASRPPPAAHRPAPAMS SMTSSMYVTSSAPPTRHAKTSIKSSITTTSTTKKAPVASMMTQSVYTPSSRPATTSRL SMGAVKPNRGATPTSARTNHPISSTPNRRSMDTRKPPMPRKSILERKQETKKEVTPVS DAPVVEVVEESQVETVVVATKTSPLVEETTEQETEVLRPETPEVVAQEVPQPEEKSVE VVAEEPKEVEEVHAAPEEAPLAPEHTQQDVEETPRADSPAPVAESTADKVEQEAEKPV EKPEDVIIPPSETVEHESVNEVHEEKPTEIFESVHQEEEEEGHHEEEHRETSGNTSLA DELISIGIDQNMSQDEIMPSKPEVVELEYPLIEEKKVPVAAVNDLVDVFGNDFINQNQ PQRMVEFDEDTDSGKASPTSSETSSTTDEVTPRSVIEEVKVLAPRVLPIVRSAEDMAR KEKEAREAEERKNRLAAILAKSRGMASPMTNTLPPTAADIKESGRANDVLARVAAMTN SSTLQKILQRKQGSNPSLQVINSKSLFFNNSFFQTSESTGGEIY" gene <35322..>36128 /gene="Cre-arx-7" /locus_tag="CRE_30049" /db_xref="WormBase:WBGene00057109" mRNA join(<35322..35406,35489..35610,35877..>36128) /gene="Cre-arx-7" /locus_tag="CRE_30049" /product="CRE-ARX-7 protein" /db_xref="WormBase:WBGene00057109" CDS join(35322..35406,35489..35610,35877..36128) /gene="Cre-arx-7" /locus_tag="CRE_30049" /note="contains similarity to Pfam domain PF04699 ARP2/3 complex 16 kDa subunit (p16-Arc); contains similarity to Interpro domain IPR006789 (ARP2/3 complex 16 kDa subunit (p16-Arc)); coded for by the following C. remanei cDNAs: DT934491, DR777066, DR782273, DT934728, DR780463" /codon_start=1 /product="CRE-ARX-7 protein" /protein_id="EFP12064.1" /db_xref="InterPro:IPR006789" /db_xref="PFAM:PF04699" /db_xref="WormBase:CRE30049" /db_xref="WormBase:WBGene00057109" /translation="MAKNMQNTSYRKLDVDAFDPEQYDENDETVDTPGLGPDERAVQG YLSSNRLDDALHASLVSPPLKTKDQNVKDRATLLVTKVLQSFKNAEIEQAVSKLSIDE GDILMKYVYKAMELGSDAAVCQSLLAWHAQLVAKFGHGAIMRVFSGRQRL" gene complement(<36414..>39692) /locus_tag="CRE_30090" /db_xref="WormBase:WBGene00057108" mRNA complement(join(<36414..36641,36693..37172,37219..37338, 37385..37622,37671..37785,37835..38109,38153..38777, 38860..39007,39062..39486,39533..>39692)) /locus_tag="CRE_30090" /product="hypothetical protein" /db_xref="WormBase:CRE30090" /db_xref="WormBase:WBGene00057108" CDS complement(join(36414..36641,36693..37172,37219..37338, 37385..37622,37671..37785,37835..38109,38153..38777, 38860..39007,39062..39486,39533..39692)) /locus_tag="CRE_30090" /note="contains similarity to Pfam domains PF04987 (Phosphatidylinositolglycan class N (PIG-N)), PF00884 (Sulfatase); contains similarity to Interpro domains IPR017849 (Alkaline phosphatase-like, alpha/beta/alpha), IPR007070 (GPI ethanolamine phosphate transferase 1), IPR000917 (Sulphatase), IPR017852 (GPI ethanolamine phosphate transferase 1, C-terminal)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12031.1" /db_xref="InterPro:IPR000917" /db_xref="InterPro:IPR007070" /db_xref="InterPro:IPR017849" /db_xref="InterPro:IPR017852" /db_xref="PFAM:PF00884" /db_xref="PFAM:PF04987" /db_xref="WormBase:CRE30090" /db_xref="WormBase:WBGene00057108" /translation="MSWNILVASITVHLILIYSIFDVYYTSPLVHGIPPQFINSQSFP AKRIFIISADGLRYDTFNKYPDMSPYLHSIMNNRKVSLNSFKNLKELYRFQGIYGLSR SHVPTESRPGHVAIFAGITEDISAVAKGWKKNPVQFDSVFNRSSNSWMWGSPDIVNLF DDLPNAKSFSYSSDEEDFASEDASKLDKWVFDHFETFLSSASTNNELKMKLNEPKSVF FLHLLGIDTNGHGNKPRSKQYIENIKVVDSGIEKVQKLVDEFFPDGKTAWLFTSDHGM TDWGSHGAGSDDEVLTPFVAWGAGIKKGGPKLDVHQIDLAPLISSLIGCPIPVNSMGI LPVQMMDSKSSGYEFKAIEANFRQLKEQITFLKNAKSGRFWFTQFEKFGDKAMESLRN TLNQLGRDRRFSVATSLFAENAHLMKEAIVFYHRYDRQMLGAAVSCSFIAWIALVVSF LNDSTTKGTYKLLIPNRFFTIPFLLAFLFSVYCSLSITQSIYIFLPVYLLSILENHSH LTRKAREYATLLFAKDFTKLRIVDSFMKPFVGFVGFIITICIFVLTFMDRAFLAAVFI LLAFIPQFYSYPIVSYWSKTWILTCLSLCIFPFLPAVGVTTHIPLCIISPFLTAGICH RLSKRGCLARQKQLFELMVYVHSAVAIFITIVNYGFEKPPSIARWISWISIPLSLIAP SIISGPYLVDRLIAYSLCFYVPYSLLSISYESLFVLIFLFLLTLFVRFEFGHLSDVEL LQLKIDATKGLSEKKVLIKICYFTVSSGEYVELRRTVVCVSFVLCTLFGTGNFASINS FNPSTLNLFISVFSPFTMAILLVLKLLIPILLVSSAFASIVRFDRESIQRLCCFSLIF TDFMSMCFFHQLRDDGSWLDIGMSISQFIVSMCISLALLILLSISSHLMAFDFSRRSD STRFSPEIESISKPRKLSDDEAA" gene <40116..>42309 /gene="Cre-ztf-23" /locus_tag="CRE_30050" /db_xref="WormBase:WBGene00057107" mRNA join(<40116..40167,40212..40351,40534..40665,40888..41157, 41303..41551,41728..42012,42060..42207,42257..>42309) /gene="Cre-ztf-23" /locus_tag="CRE_30050" /product="CRE-ZTF-23 protein" /db_xref="WormBase:WBGene00057107" CDS join(40116..40167,40212..40351,40534..40665,40888..41157, 41303..41551,41728..42012,42060..42207,42257..42309) /gene="Cre-ztf-23" /locus_tag="CRE_30050" /note="contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type; contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR013087 (Zinc finger, C2H2-type/integrase, DNA-binding), IPR007087 (Zinc finger, C2H2-type)" /codon_start=1 /product="CRE-ZTF-23 protein" /protein_id="EFP12070.1" /db_xref="InterPro:IPR007087" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR015880" /db_xref="PFAM:PF00096" /db_xref="WormBase:CRE30050" /db_xref="WormBase:WBGene00057107" /translation="MIGYPIVFRCCECTVEEQTMEHLESHIWSRHLQAFPFKCAHCDF PALSAISLMEHFEQNHAEVTTVEFKRNLDDEKRFRKMVAESIAIEIEDTSQQDAGVQM DSIQPMMQQGPTQIMLLPPQTSRYQDIDDSPEPEDNDFGVMEDDENVEELIEDDEDDD YIDELGNPVFIGAHDDNNFILDDEISQQGGCNMRGNSFHLKYIRTRRMDKLIDNVVVN AAQRTSPDSVKPVNLYTEISCFTVFQTSNPTNGEGHYVDGRGGRKVGRYQCDQCPRSF KVWRKYQSKLDEHRRTHLGVRPFNCPYCDQSFTQKGALKTHMRTHTGERPFYCQWDCG KQFISSSARRHHEKTHSGERPYICSVCGKGFTKNSHVIRHLRNIHNREIIQRDSMLQG GMRSPEITVSEATGEIVDIQPRGKEISVVREIVEQIHEEKFSERKDFLRI" gene <44367..>53591 /gene="Cre-mod-5" /locus_tag="CRE_30051" /db_xref="WormBase:WBGene00057106" mRNA join(<44367..44415,47607..47684,48218..48464,49127..49293, 49344..49441,49492..49625,50225..50602,50644..50755, 51369..51626,52047..52244,52434..52521,53383..>53591) /gene="Cre-mod-5" /locus_tag="CRE_30051" /product="CRE-MOD-5 protein" /db_xref="WormBase:WBGene00057106" CDS join(44367..44415,47607..47684,48218..48464,49127..49293, 49344..49441,49492..49625,50225..50602,50644..50755, 51369..51626,52047..52244,52434..52521,53383..53591) /gene="Cre-mod-5" /locus_tag="CRE_30051" /note="contains similarity to Pfam domain PF00209 Sodium:neurotransmitter symporter family; contains similarity to Interpro domain IPR000175 (Sodium:neurotransmitter symporter); coded for by the following C. remanei cDNAs: DT933501" /codon_start=1 /product="CRE-MOD-5 protein" /protein_id="EFP12022.1" /db_xref="InterPro:IPR000175" /db_xref="PFAM:PF00209" /db_xref="WormBase:CRE30051" /db_xref="WormBase:WBGene00057106" /translation="MLRWHSVRRKQHQQLQAELSSGAASMLSAPESRRVSRSMSVKAP TAAEYMPLPVVDKPLTLTVSNSHSIDPNEPIAALGGLTPTKEGRVAALRRRSSMVRDK WATKMEFLLAVVGYAVDLGNIWRFPSVCYKHGGGAFLIPYFIMLMVGGLPMFYMELVL GQFHRAGCVSIWRKVCPLFRGIGYGICCICTFIAIFYNAIIAQAVYFAIVSLSKIWDS EVPWAKCGNPWNTPRCSDDLNVTMSRNGTRLSTPSEEYYLYNVLEVQKSSGFDDLGGV KGSMAVCLLAVFTMVYFALWKGPQSSGKIVWVTATAPYVILSILLVRGLLLPGAQNGL YYYITPDFEKLKDPAVWSAAATQIFFSLGPGFGVLLALSSYNDFNNNCYRDAVTTSII NCATSFFSGCVVFSTLGYMSLLTNRPINEVVGEHDASLIFIVYPQALATMDYSCFWSL IFFIMLITLGIDSTFAGIEAFITGFCDESRFLTKNRKWFVLVICIIYYFLSFPAISYG GQFVIPFLDEYGVSLSVLFIVTCEMIAVCWFYGVDQFSKDIRAMLGFYPGIYWRVCWT CSPVFISLIFIMTVYNSSFKPMQMASYTFPWWSVILGWFLRLISVLAIPGFAIIYLLS GTGSLTERFRWAITPQQRRNSATSLAADPTQIIDSSFLDPIHTLTPV" gene complement(<54023..>55092) /locus_tag="CRE_30091" /db_xref="WormBase:WBGene00057105" mRNA complement(join(<54023..54160,54467..54558,54606..54770, 54862..54949,55000..>55092)) /locus_tag="CRE_30091" /product="hypothetical protein" /db_xref="WormBase:CRE30091" /db_xref="WormBase:WBGene00057105" CDS complement(join(54023..54160,54467..54558,54606..54770, 54862..54949,55000..55092)) /locus_tag="CRE_30091" /note="contains similarity to Pfam domain PF00025 ADP-ribosylation factor family; contains similarity to Interpro domains IPR006687 (GTP-binding protein SAR1), IPR005225 (Small GTP-binding protein), IPR001806 (Ras GTPase), IPR003579 (Ras small GTPase, Rab type), IPR006688 (ADP-ribosylation factor), IPR006689 (ARF/SAR superfamily); coded for by the following C. remanei cDNAs: DR777458" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12046.1" /db_xref="InterPro:IPR001806" /db_xref="InterPro:IPR003579" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006687" /db_xref="InterPro:IPR006688" /db_xref="InterPro:IPR006689" /db_xref="PFAM:PF00025" /db_xref="WormBase:CRE30091" /db_xref="WormBase:WBGene00057105" /translation="MYTLSAGIWEKFFKKKDYYVVIVGLDNAGKTTFLEQTKSHFVKD YGVLNPSKITATVGLNTGKVELNNTCLHFWDLGGQESLRELWATYYDDANALIFVVDA TRSDLFPIVASQFKEVMSNEIVQNVPVLVAVNKSEMEGAAAAAEVRMLLEDDNHRSDL AVLPVSALEGTNIERCVHWIVRSLASQPLYL" gene <57413..>57937 /gene="Cre-rpb-7" /locus_tag="CRE_30052" /db_xref="WormBase:WBGene00086070" mRNA <57413..>57937 /gene="Cre-rpb-7" /locus_tag="CRE_30052" /product="CRE-RPB-7 protein" /db_xref="WormBase:WBGene00086070" CDS 57413..57937 /gene="Cre-rpb-7" /locus_tag="CRE_30052" /note="contains similarity to Pfam domains PF00575 (S1 RNA binding domain), PF03876 (RNA polymerase Rpb7-like, N-terminal domain); contains similarity to Interpro domains IPR003029 (S1, RNA binding), IPR005576 (RNA polymerase Rpb7, N-terminal), IPR012340 (Nucleic acid-binding, OB-fold)" /codon_start=1 /product="CRE-RPB-7 protein" /protein_id="EFP12029.1" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR005576" /db_xref="InterPro:IPR012340" /db_xref="PFAM:PF00575" /db_xref="PFAM:PF03876" /db_xref="WormBase:CRE30052" /db_xref="WormBase:WBGene00086070" /translation="MFFHLSLDHEVCLHPKYFGPNLNETIKMKLFNEVEGTCTGKYGF VIAVTTIDTIGHGLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIG PLSCFISRHCIPPDMEFDPNSEKPCYKTNDEATIIRNDDEIRVKLIGTRVDANDIFAI GTLMDDYLGLCPAE" gene <58158..>59021 /locus_tag="CRE_30053" /db_xref="WormBase:WBGene00057104" mRNA join(<58158..58217,58479..>59021) /locus_tag="CRE_30053" /product="hypothetical protein" /db_xref="WormBase:CRE30053" /db_xref="WormBase:WBGene00057104" CDS join(58158..58217,58479..59021) /locus_tag="CRE_30053" /note="contains similarity to Pfam domain PF00717 Peptidase S24-like; contains similarity to Interpro domains IPR001733 (Peptidase S26B, eukaryotic signal peptidase), IPR011056 (Peptidase S24, S26A and S26B, C-terminal), IPR000223 (Peptidase S26A, signal peptidase I); coded for by the following C. remanei cDNAs: DR777170" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12039.1" /db_xref="InterPro:IPR000223" /db_xref="InterPro:IPR001733" /db_xref="InterPro:IPR011056" /db_xref="PFAM:PF00717" /db_xref="WormBase:CRE30053" /db_xref="WormBase:WBGene00057104" /translation="MKFLPDVAMFSEIRQMNVRQCGRAQRKFPDLKINIFQLLYQCLN FAMVVSSALMIWKGMMVLTGSDSPVVVVLSGSMEPAFYRGDLLLLTNDQSDPVRVGDI TVFKVEGREIPIVHRVIKVHEKTADNTKILTKGDNNQVDDRGLYAPGQLWLSRTDVVG RTKGLLPYVGMVTIIMNDYPKLKYAVLAFLGLFVLLHKEN" gene complement(<59340..>60556) /locus_tag="CRE_30092" /db_xref="WormBase:WBGene00057103" mRNA complement(join(<59340..59981,60030..60397,60442..>60556)) /locus_tag="CRE_30092" /product="hypothetical protein" /db_xref="WormBase:CRE30092" /db_xref="WormBase:WBGene00057103" CDS complement(join(59340..59981,60030..60397,60442..60556)) /locus_tag="CRE_30092" /note="contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type); coded for by the following C. remanei cDNAs: DT934191" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12079.1" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR013083" /db_xref="PFAM:PF00097" /db_xref="WormBase:CRE30092" /db_xref="WormBase:WBGene00057103" /translation="MPQYYCHRCTRSFDLDANAPVACTRCQGEFVEEVSTPAMVAAGM PPGFHALQQIAEIIRNGMVQDFTGLIPEGLIPQEQQGGQAVPQQHAEPTAPPQEAEHV APQQPAAQAAPQQQADQGDPPPQLERQAEAPRAAAGGDPGARQANVGPTLEDFIHSMF RMEPRPAAAGEDPQPNVTFSFQMPGGVGIQIHAHRAGPQDAAGQVPQFVGNIPDGERV ELETAMQDLLAQFQGEGGMMSRGFLEADVKQYLPMKKVTQEQIDNGVQCTTCFDTFKL GEDVGALDCNHIFHRPCIEPWLTTKNSCPVCRQKVSMKSWKRNHQRRVSFFFLTENFI TKYLFSGSRSGSRGSRLKFPLPTMSIVVCLPFLSKNSHHL" gene complement(<60798..>62299) /locus_tag="CRE_30093" /db_xref="WormBase:WBGene00057102" mRNA complement(join(<60798..60888,61137..61363,61445..>62299)) /locus_tag="CRE_30093" /product="hypothetical protein" /db_xref="WormBase:CRE30093" /db_xref="WormBase:WBGene00057102" CDS complement(join(60798..60888,61137..61363,61445..62299)) /locus_tag="CRE_30093" /note="contains similarity to Pfam domain PF08772 Nin one binding (NOB1) Zn-ribbon like; contains similarity to Interpro domain IPR014881 (Nin one binding (NOB1) Zn-ribbon like); coded for by the following C. remanei cDNAs: DY528879, DY528151" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12030.1" /db_xref="InterPro:IPR014881" /db_xref="PFAM:PF08772" /db_xref="WormBase:CRE30093" /db_xref="WormBase:WBGene00057102" /translation="MAANKEKPIQHMVIDTCAIIANRGLHVSFSSNDYSENRFIFQTL ADQYYAPPQILDELRSSEARRIWGTLPFEVILREPTQNALRAVIDASKTTGDFQSLSM VDIKMIALTYDLHRQFVAEKEIATTTEEEEKKIIEDLSEKVEKIEIDNEKAEEEQKAV EKKVESDDSAIEEVEGSEASENENTETESDDDDDETGWITQDNIEETLKKLGAFEIEE NMVVGCLTTDFALQNVLLAMNLSLVSLSGYRIRKLKSFVLRCRTCFTTTSVMTKEFCP SCGHKTLHKCAVSVDEDGKQQLHINWNRMSNRRGLVYTLANPKGGKHAINERLFEDQP MPHMRMAKVHLDPLADGPFSVHDVNSRSAMLGVRTINNRAKQSRNRNEAKRGGRRK" gene <63332..>64096 /locus_tag="CRE_30054" /db_xref="WormBase:WBGene00086076" mRNA join(<63332..63517,63660..63770,63823..63891,63945..64010, 64061..>64096) /locus_tag="CRE_30054" /product="hypothetical protein" /db_xref="WormBase:CRE30054" /db_xref="WormBase:WBGene00086076" CDS join(63332..63517,63660..63770,63823..63891,63945..64010, 64061..64096) /locus_tag="CRE_30054" /note="contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR000719 (Protein kinase, core)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12069.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR017441" /db_xref="WormBase:CRE30054" /db_xref="WormBase:WBGene00086076" /translation="MEIPSFFSPLTFFLISSSSLFLDRFIFIPQNFRMSSGKRRNPLG LSLPPTVNEQSENGEAAAEEANPTVPLEEQLKKLGLTEPQTQRLSEFLLAKEGIKELS EDMLQTEGELGHGNGGVVNKCVHKKTGVIMARKLVHLEIKPSPIYCWILWCFR" gene complement(<64227..>65133) /gene="Cre-col-48" /locus_tag="CRE_30094" /db_xref="WormBase:WBGene00057101" mRNA complement(join(<64227..64345,64395..>65133)) /gene="Cre-col-48" /locus_tag="CRE_30094" /product="CRE-COL-48 protein" /db_xref="WormBase:WBGene00057101" CDS complement(join(64227..64345,64395..65133)) /gene="Cre-col-48" /locus_tag="CRE_30094" /note="contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat); coded for by the following C. remanei cDNAs: DR775940, DR777904, DY526861" /codon_start=1 /product="CRE-COL-48 protein" /protein_id="EFP12040.1" /db_xref="InterPro:IPR002486" /db_xref="InterPro:IPR008160" /db_xref="PFAM:PF01391" /db_xref="PFAM:PF01484" /db_xref="WormBase:CRE30094" /db_xref="WormBase:WBGene00057101" /translation="MVEKSKGSLRSVAFVAVTFSTVAVTAVLIAFPLVFHYVQTLQAS VQGEVEYCKSRSRDMWREMVEVAPEGPDDPLDVLLRATRQADAQCCTCQQGPPGPDGE PGTPGRDGEPGTGPGEPGPPGPDAELHDRILPVPPQCPCTAAPGLGGPPGPPGQDGIP GNPGRNGEDGAPGPQGPAGPPGPPGQPGQPGQRGPPGEPGALLPGGDAPPGPPGPPGR PGAPGQPGKAGSPGQDGTNGDAGVSGEPGQRGPPGPPGQAGTPGAPGEAGSPGSCEHC PPARLAPGY" gene <65461..>66391 /gene="Cre-mek-2" /locus_tag="CRE_30055" /db_xref="WormBase:WBGene00057100" mRNA join(<65461..65475,65548..65644,65694..66147, 66217..>66391) /gene="Cre-mek-2" /locus_tag="CRE_30055" /product="CRE-MEK-2 protein" /db_xref="WormBase:WBGene00057100" CDS join(65461..65475,65548..65644,65694..66147,66217..66391) /gene="Cre-mek-2" /locus_tag="CRE_30055" /note="contains similarity to Pfam domain PF00069 Protein kinase domain; contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related); coded for by the following C. remanei cDNAs: DT937142" /codon_start=1 /product="CRE-MEK-2 protein" /protein_id="EFP12061.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR017442" /db_xref="PFAM:PF00069" /db_xref="WormBase:CRE30055" /db_xref="WormBase:WBGene00057100" /translation="MMTASVGRLPEKFVGRISVAVVRGLTYLKDEIKILHRDVKPSNM LVNSNGEIKLCDFGVSGMLIDSMANSFVGTRSYMAVSILLRVSPVLKSEFQPERLTGS HYTISSDIWSFGLSLVELLIGRYPVPAPSQAEYAAMFNVSENEIELAESLEEPNYHPP SNPASMAIFEMLDYIVNGPPPTLPKRFFTDEVIGFVSKCLRKLPSERATLKSLSGDVF FSNYADNDDQGEFADFVKGTINLPKLNP" gene <67441..>67851 /gene="Cre-nduf-5" /locus_tag="CRE_30056" /db_xref="WormBase:WBGene00057099" mRNA join(<67441..67674,67720..>67851) /gene="Cre-nduf-5" /locus_tag="CRE_30056" /product="CRE-NDUF-5 protein" /db_xref="WormBase:WBGene00057099" CDS join(67441..67674,67720..67851) /gene="Cre-nduf-5" /locus_tag="CRE_30056" /note="contains similarity to Brugia malayi NADH-ubiquinone oxidoreductase 15 kDa subunit, putative.; TR:A8QC49; coded for by the following C. remanei cDNAs: DT933508, DT934127" /codon_start=1 /product="CRE-NDUF-5 protein" /protein_id="EFP12057.1" /db_xref="WormBase:CRE30056" /db_xref="WormBase:WBGene00057099" /translation="MATGNRVPENFQTLSPIVKAPLSDTLSVPLSQQGRICGFFESQF YRCMEAYGAKMGRKYCDLEHRDYQECITGDKQKKRAEAISAQRRKLFLEGKLDSPFLD NHPEPGHFKTDHFQWNRIN" gene complement(<68066..>69849) /gene="Cre-dnj-28" /locus_tag="CRE_30095" /db_xref="WormBase:WBGene00057098" mRNA complement(join(<68066..68508,68624..68970,69017..69342, 69443..69685,69742..>69849)) /gene="Cre-dnj-28" /locus_tag="CRE_30095" /product="CRE-DNJ-28 protein" /db_xref="WormBase:WBGene00057098" CDS complement(join(68066..68508,68624..68970,69017..69342, 69443..69685,69742..69849)) /gene="Cre-dnj-28" /locus_tag="CRE_30095" /note="contains similarity to Pfam domains PF07719 (Tetratricopeptide repeat), PF00515 (Tetratricopeptide repeat) (5), PF00226 (DnaJ domain); contains similarity to Interpro domains IPR015609 (Molecular chaperone, heat shock protein, Hsp40, DnaJ), IPR011990 (Tetratricopeptide-like helical), IPR008940 (Protein prenyltransferase), IPR001440 (Tetratricopeptide TPR-1), IPR001623 (Heat shock protein DnaJ, N-terminal), IPR013105 (Tetratricopeptide TPR2), IPR013026 (Tetratricopeptide region); coded for by the following C. remanei cDNAs: DT937188, DR777449" /codon_start=1 /product="CRE-DNJ-28 protein" /protein_id="EFP12053.1" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR001623" /db_xref="InterPro:IPR008940" /db_xref="InterPro:IPR011990" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR013105" /db_xref="InterPro:IPR015609" /db_xref="PFAM:PF00226" /db_xref="PFAM:PF00515" /db_xref="PFAM:PF07719" /db_xref="WormBase:CRE30095" /db_xref="WormBase:WBGene00057098" /translation="MKRRTVFLIFCVGLSIANDKTGSHSEYEAGNALFVNRQYTDALT HYHKAIELDPTNYQAIFRRATTYFTFGRTKPGLIDLDTVLEQKPDFAGARNQRANVLI KMGRLEDALADLRYLNSGSSASDEIQEKLESIEQLKDEKRILNQLPLGENCDVVEEMT TKLLESQPWDFSLYIQRAKCHQAENRLKTAIHDLKHASKLSSDNTELLYEMSVMEYQV GDVRDSLSTIRECLKINPDHKTCYASYKSLRKIVKSLDSMKNSMEEQKWVDCLERGEK LLKSNVDDNAVKVNVYRLTCQCNREEGNIGEAIQQCNQVLEFDDSDVETLIQRAEAYM ADEEYDLATADYEKAMEFDSSNEAAKTGKDQAKRAKELVGKRDYYKILGVRRNANKRE ITKAYRKKAQKWHPDNFQDEKEKKKAEKKFIDIAAAKEVLSDDEKRRAFDNGQDPLDS ENGRNGHGGGGGFHDFQGFNPFGRGGGGGSRSNFFFHF" gene <70030..>73518 /locus_tag="CRE_30057" /db_xref="WormBase:WBGene00057097" mRNA join(<70030..70428,70476..71624,72184..72596,72646..72713, 72761..72831,72880..73018,73064..73128,73179..73249, 73302..>73518) /locus_tag="CRE_30057" /product="hypothetical protein" /db_xref="WormBase:CRE30057" /db_xref="WormBase:WBGene00057097" CDS join(70030..70428,70476..71624,72184..72596,72646..72713, 72761..72831,72880..73018,73064..73128,73179..73249, 73302..73518) /locus_tag="CRE_30057" /note="coded for by the following C. remanei cDNAs: DR778043" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12058.1" /db_xref="WormBase:CRE30057" /db_xref="WormBase:WBGene00057097" /translation="MEFNEKKPKFQQNVVSNLLDREIGTEYRKRMLLFYLSEKTIEFS DATNTNTYRHPYQLLTSTKPDTLVQIDLDKCDKNPDSDQPPFSLLADCLGFSPDGKYL AFHSHARSVVSIFRYTGAEGGKCAEGISNPQNYLREAGRLDLSSFTRDYNYENERMFG SWWTDDSKALIVQLSMESSIDDEDQVVPEDEDVLQLARQLVEENRNTYPEGDMVGNFV NERRRRLEILRAPAGEGFRDDDLYEEVRYNVYDNTMRPNPECYDADAEIDYGTLETLF KQHTNGIMPENELTNEISAYQHRETSRTIPFTFAMESAARMRVDSFKKRGQTSRTMPV YHALTRSIRKSNYDGYSSDSSDSSDSTDDLHQDQLPASYAYMQESDATRMLAAEEKLK KLQKMNCRCRICSKREVSYGLNGEKKVIVCTDYWKKWTRKYGANLCGLGYSKPDAYIR RKHGLRNERPTVGAYRDRLRKTLEDLDYFHKSYLTASAREERLAGREDRVQSLKVDTM LVLAFEIEEDTVCPLYYNNISSKFLCHVRDRTMTICCNNDTIEIYHYSETTHIWEQQE DVRHSQNESYLVPLDFRVGTMPGQPSRNEEPEMGYAGSIDSILLKNFREIFDDLFESD YFYSPVQQDTLTLLHRDMPEVFDTNDALLKGRPRVFRCHALSDDLIAVSLKLPWFKPM YMGMIISPDSCNTTLYPDYHEFLKLLFANHLPELLPRAWTYFNPYPAKDQPWFKKEII NVSDPRDLNDYELLRETYEFLSKHWNNLKSTSNPLNDSLFNSTHAYQFFSKFIFTNDN RITFNAPDLNKRKHLDVFCHPKDPFAVVNNTYNWFFGIRKKDQDDVIVGVNPLESDDD DEKMDTN" gene <73742..>75249 /locus_tag="CRE_30058" /db_xref="WormBase:WBGene00086071" mRNA join(<73742..73811,73858..74071,74751..74976, 75025..>75249) /locus_tag="CRE_30058" /product="hypothetical protein" /db_xref="WormBase:CRE30058" /db_xref="WormBase:WBGene00086071" CDS join(73742..73811,73858..74071,74751..74976,75025..75249) /locus_tag="CRE_30058" /note="contains similarity to Pfam domain PF00071 Ras family; contains similarity to Interpro domains IPR003577 (Ras small GTPase, Ras type), IPR003578 (Ras small GTPase, Rho type), IPR001806 (Ras GTPase), IPR003579 (Ras small GTPase, Rab type), IPR013753 (Ras)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12047.1" /db_xref="InterPro:IPR001806" /db_xref="InterPro:IPR003577" /db_xref="InterPro:IPR003578" /db_xref="InterPro:IPR003579" /db_xref="InterPro:IPR013753" /db_xref="PFAM:PF00071" /db_xref="WormBase:CRE30058" /db_xref="WormBase:WBGene00086071" /translation="MRSSAPLRELHVALVGMSGSGKSAVAVKYITKRFIGEYDSTLED NYCRQETVGGQCLMVWMMDTVESATKDEMRWIAWADVYVVVYDVTSQLSFQYAEGILE RISRHEHVLCPREHRTLLVGNKSDLERYRQVSETEGERLASQQKAYFAECSAASDLRQ FTQSLHSIFQNIISGARSPSPRQCSSDSEIITPRKGAFSSLRSSSRSSQVRAKTSTTK TPAPLHKTPSLSKLKTGSKLLKLFHT" gene <75410..>75856 /locus_tag="CRE_30059" /db_xref="WormBase:WBGene00086078" mRNA join(<75410..75482,75532..75652,75703..>75856) /locus_tag="CRE_30059" /product="hypothetical protein" /db_xref="WormBase:CRE30059" /db_xref="WormBase:WBGene00086078" CDS join(75410..75482,75532..75652,75703..75856) /locus_tag="CRE_30059" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12072.1" /db_xref="WormBase:CRE30059" /db_xref="WormBase:WBGene00086078" /translation="MKSTPLKRKHVSSLDALLKATATGTEQANSIDKALNTPTDRIMK TTLEFDKVHTIKATDSSEVEKYTVLKATLHDEMEAARNLKQLGITPLDRCCRIEPIPP AYLKCKKIYKKSQ" gene <76691..>77790 /gene="Cre-col-49" /locus_tag="CRE_30060" /db_xref="WormBase:WBGene00057096" mRNA join(<76691..76952,77198..>77790) /gene="Cre-col-49" /locus_tag="CRE_30060" /product="CRE-COL-49 protein" /db_xref="WormBase:WBGene00057096" CDS join(76691..76952,77198..77790) /gene="Cre-col-49" /locus_tag="CRE_30060" /note="contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008165 (Protein of unknown function GLTT), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)" /codon_start=1 /product="CRE-COL-49 protein" /protein_id="EFP12043.1" /db_xref="InterPro:IPR002486" /db_xref="InterPro:IPR008160" /db_xref="InterPro:IPR008161" /db_xref="InterPro:IPR008165" /db_xref="PFAM:PF01391" /db_xref="PFAM:PF01484" /db_xref="WormBase:CRE30060" /db_xref="WormBase:WBGene00057096" /translation="MWKFVIGSVSTTAFLATLCTIYYSVSMLDELDSFRGRIRGDLED WKEVSDDTWQRLNDMTSRSAPKKTNILKEFVRGKRSDGNGDQCNCAEPTKNCPAGPAG EKGTPGNPGQPGPDGVDGDNGVDGEVVEHEMPDTKECIKCPAGPPGPPGPPGPLGPRG EKGSEGPRGALGDQGETGPIGEIGDQGPAGFPGRQGVKGPAGQPGTIATVGLAGRSGP QGPLGEAGSQGEPGVDGKDGAVGEPGRKGENGRAGKRGKDGVAGVPGTRGKLGEDAGY CTCPPRTA" gene complement(<77858..>80849) /locus_tag="CRE_30096" /db_xref="WormBase:WBGene00057095" mRNA complement(join(<77858..77923,78749..78985,80437..80613, 80727..>80849)) /locus_tag="CRE_30096" /product="hypothetical protein" /db_xref="WormBase:CRE30096" /db_xref="WormBase:WBGene00057095" CDS complement(join(77858..77923,78749..78985,80437..80613, 80727..80849)) /locus_tag="CRE_30096" /note="contains similarity to Brugia malayi Putative uncharacterized protein.; TR:A8PRW6" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12035.1" /db_xref="WormBase:CRE30096" /db_xref="WormBase:WBGene00057095" /translation="MVFLFDDVPIKEYFTKLFNFYVDFQAQNPKYRCIFGKVHVLNAA KVLLLLEIFLIIPLYILFLFPWWLMWIGFHLVFILITIYALRKKKHRFMWPMVLFTLT QFFFWGILTLLQLLIAFFDTQSFLNFYSQGHHEEFFEKALVVIVVKLIVLLIGAILFW RLSVFYAVKNYFSDRLEGQVSATEESKGLEGVAQKLLQPV" gene complement(<83558..>84620) /locus_tag="CRE_30097" /db_xref="WormBase:WBGene00086073" mRNA complement(join(<83558..83701,83745..83930,84420..>84620)) /locus_tag="CRE_30097" /product="hypothetical protein" /db_xref="WormBase:CRE30097" /db_xref="WormBase:WBGene00086073" CDS complement(join(83558..83701,83745..83930,84420..84620)) /locus_tag="CRE_30097" /note="contains similarity to Pfam domain PF01579 Domain of unknown function DUF19; contains similarity to Interpro domain IPR002542 (Protein of unknown function DUF19)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12056.1" /db_xref="InterPro:IPR002542" /db_xref="PFAM:PF01579" /db_xref="WormBase:CRE30097" /db_xref="WormBase:WBGene00086073" /translation="MFHVLLFSVLFVFPIPSTSEHCDQSILLSLFKCSDIASNLTIQL QKLKDMPPASQMGTYLDLCESYLFCLEKIECPDAQKHLQPREKAVTSMCNGMKFMAGP FGKCVEKLRSNSPSLKKYPCARHFVNQVGRPGNCEMYQTEYECTQSLVKDQCGIEALD ELETHKSYILSQMHCK" gap 85016..85025 /estimated_length=10 gene complement(<85431..>86217) /locus_tag="CRE_30098" /db_xref="WormBase:WBGene00057094" mRNA complement(join(<85431..85583,85650..85709,85758..85871, 86017..>86217)) /locus_tag="CRE_30098" /product="hypothetical protein" /db_xref="WormBase:CRE30098" /db_xref="WormBase:WBGene00057094" CDS complement(join(85431..85583,85650..85709,85758..85871, 86017..86217)) /locus_tag="CRE_30098" /note="contains similarity to Pfam domain PF01579 Domain of unknown function DUF19; contains similarity to Interpro domain IPR002542 (Protein of unknown function DUF19)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12044.1" /db_xref="InterPro:IPR002542" /db_xref="PFAM:PF01579" /db_xref="WormBase:CRE30098" /db_xref="WormBase:WBGene00057094" /translation="MQTLVLFFFSSVVVLANGAVPCDHLDAIKSLECKPLLGKLAGEM AKHSDMPPPDELKQFSTMCQEALSCMEGIKCDVLRNATVLIAKTCTGINLMSGPFGKC IDTLRSTPPSLKKYPCGRFLQTEKGRPGNCQMYQDEFECTKKLTKDKCGEEAVESMKK HMDYILGMMECDAKE" gene complement(<86481..>88534) /gene="Cre-lpd-6" /locus_tag="CRE_30099" /db_xref="WormBase:WBGene00057093" mRNA complement(join(<86481..86979,87029..87235,87290..87544, 87593..87718,87768..87844,87894..88075,88120..>88534)) /gene="Cre-lpd-6" /locus_tag="CRE_30099" /product="CRE-LPD-6 protein" /db_xref="WormBase:WBGene00057093" CDS complement(join(86481..86979,87029..87235,87290..87544, 87593..87718,87768..87844,87894..88075,88120..88534)) /gene="Cre-lpd-6" /locus_tag="CRE_30099" /note="contains similarity to Pfam domain PF04427 Brix domain; contains similarity to Interpro domain IPR007109 (Brix); coded for by the following C. remanei cDNAs: DR777874, DT935906" /codon_start=1 /product="CRE-LPD-6 protein" /protein_id="EFP12060.1" /db_xref="InterPro:IPR007109" /db_xref="PFAM:PF04427" /db_xref="WormBase:CRE30099" /db_xref="WormBase:WBGene00057093" /translation="MKLKNGRKKKKSGAHNRGNVDAASQKDALYHQEKFVKKIQKQKF LENKEKELARQPHCLVIHRGDVGKYVKGLESDLRNLVEPNTAKNLKILKRNNIKDFIV NGAVLGVTNMMVLTSSDASLQLRMMRFSQGPTLSFKVKQYSLARHVFNIQKRPIATDK LFKSSPLVVMNGFGDGEKKHLSLVQTFIQNMFPSINVDTLQIGSLKRCLIVSYDEETD EISMRHYAIRVVASGLNKSVRKLVQAEKTMGKNIPNLSTYKDISDYFLNPGQLSDSEF EGDQQEVELPQSISEQSGCGAGQKSNVRLHEIGPRLTLELTKIEEGIDEGEVLYHKHH AKTPDELIKLRAHMDKKKQMKKRREQESEQRVIRRLTIAKEQQDAEEAEEKAIRETAA RRQAAATGQVEEVENQKEKDREIAMNRERDLKRANEEWGTTDNPKRGRYEDGRGRGRG GGFRGRGDEGSYRGRGGSGDRGESSGGYRGRKDDSNGYRERSMDRGGFRGRGGDRGGF RGGDRGGFRGGDRGGFGGGDRGGFRGRGGFGGGDRGGFRGRGGFRGGDRGGFRGRSGS RGGSRGGGGGGRGGGYRSQR" gene <88816..>90374 /locus_tag="CRE_30061" /db_xref="WormBase:WBGene00057092" mRNA join(<88816..88983,89037..89435,89486..89821, 89874..>90374) /locus_tag="CRE_30061" /product="hypothetical protein" /db_xref="WormBase:CRE30061" /db_xref="WormBase:WBGene00057092" CDS join(88816..88983,89037..89435,89486..89821,89874..90374) /locus_tag="CRE_30061" /note="contains similarity to Homo sapiens Sister chromatid cohesion protein DCC1; ENSEMBL:ENSP00000322180" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12085.1" /db_xref="WormBase:CRE30061" /db_xref="WormBase:WBGene00057092" /translation="MNRFITKTKPQQTNKRDVAQKRPAPVGDENTPTASSGIIQESPN KKAEETSLMAKLHTAIRHGDAQFTFDTLSKNRPFDNAMNVSSRTSKLFKNTKFFQKTM TKMEFSPSYSAPGSEFMLLSVDESVVNAFKEGQGLTIRGETTDEAVLCTDDSTFPMKI IESATTVLLLHNSLEAPDSPTLPNFQVEMIDGKCYATGELCPVVDVLNVGRLKDMLRE QELRWDWKDREEEEKLKGYRLRDLLDSVQMSVEEVKTALIDLPVVKFPNGKYRYLSHK FRGEMLGLIVEMIDEDSNNDVKLESISFVGLRKHLPENVPDQVIEWFLKSRCEKIPDK NEYRLPEENLIRDLTVVILYGTGKMPLNQFSELLGKILPFGVEVKETVFEGIADISDA SFGKVITYLGPEDLPDTIKERMLHLFEYRKLWSMEQLRPYFKDVYKSKVSFDKYVVQN CEYSLSETGEMLYCGVR" gene complement(<91625..>94072) /gene="Cre-vbh-1" /locus_tag="CRE_30100" /db_xref="WormBase:WBGene00057091" mRNA complement(join(<91625..91725,91770..91948,91995..93052, 93101..93413,93457..93516,93557..93610,93730..93969, 94017..>94072)) /gene="Cre-vbh-1" /locus_tag="CRE_30100" /product="CRE-VBH-1 protein" /db_xref="WormBase:WBGene00057091" CDS complement(join(91625..91725,91770..91948,91995..93052, 93101..93413,93457..93516,93557..93610,93730..93969, 94017..94072)) /gene="Cre-vbh-1" /locus_tag="CRE_30100" /note="contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase), PF00271 (Helicase conserved C-terminal domain); contains similarity to Interpro domains IPR011545 (DNA/RNA helicase, DEAD/DEAH box type, N-terminal), IPR000629 (RNA helicase, ATP-dependent, DEAD-box, conserved site), IPR014021 (Helicase, superfamily 1 and 2, ATP-binding), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR014001 (DEAD-like helicase, N-terminal), IPR001650 (DNA/RNA helicase, C-terminal); coded for by the following C. remanei cDNAs: DT937395" /codon_start=1 /product="CRE-VBH-1 protein" /protein_id="EFP12036.1" /db_xref="InterPro:IPR000629" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014014" /db_xref="InterPro:IPR014021" /db_xref="PFAM:PF00270" /db_xref="PFAM:PF00271" /db_xref="WormBase:CRE30100" /db_xref="WormBase:WBGene00057091" /translation="MNTQYYANQNGQQQQPGQGWSSSSYSQQGNVASSGYYSGGFGQT SSPSNGYAIQQSMAPNGMGQMVSSQQTGYIPPYYPGQQQFQMGYSENFENFEDNGSSN GYNNFSDSGNGYNNKCYSGGETNGWGGASAEYTADNLFHRTNSGINFDKYENIPVEVS GDAVPAAIENFSEAGFGPAVMENVTHSGYTKPTPVQKHSIPTLLANRDLMSCAQTGSG KTAAFLLPIIQHIMAGGPEMIKTPAFTNGRRTYFPSALVLSPTRELAIQIHKEASKFS YKTNLQTAILYGGRENYRDQVNRLRSGAHILIATPGRLIDIIEQGFIGLAGCRYLVLD EADRMLDMGFEPQIRKIVGQGMPAKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAV GRVGSTSENIEQRLLWVNEMEKRQNLMEILMNEDSTNLVLVFVETKRGANELAYFLNR QQIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAARGLDIPNVRHVINYDLPGD SDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLILEANQEVPDWLHQVAAEGR IGGGQRGGNRRFGATDYRRGNGGGSFAGNFNSYNAGGQSAGFGGGSGFGGAFGATRRP FTNGGFGAQSSLSSSSNGGSGGGFGGPRRGGFNNGMSRQNGGGFYSNGGPPATIDHWQ APRA" gene <94807..>96184 /locus_tag="CRE_30062" /db_xref="WormBase:WBGene00057089" mRNA join(<94807..95328,95381..95983,96032..>96184) /locus_tag="CRE_30062" /product="hypothetical protein" /db_xref="WormBase:CRE30062" /db_xref="WormBase:WBGene00057089" CDS join(94807..95328,95381..95983,96032..96184) /locus_tag="CRE_30062" /note="contains similarity to Pfam domains PF02807 (ATP:guanido phosphotransferase, N-terminal domain), PF00217 (ATP:guanido phosphotransferase, C-terminal catalytic domain); contains similarity to Interpro domains IPR000749 (ATP:guanido phosphotransferase), IPR014746 (Glutamine synthetase/guanido kinase, catalytic region); coded for by the following C. remanei cDNAs: DR408854, DY524995, DR779150, DR776378, DR778475, DT933242, DR408916, DR777429, DR781030, DR407085" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12066.1" /db_xref="InterPro:IPR000749" /db_xref="InterPro:IPR014746" /db_xref="PFAM:PF00217" /db_xref="PFAM:PF02807" /db_xref="WormBase:CRE30062" /db_xref="WormBase:WBGene00057089" /translation="MHSSRLQTEKNKSSKACFSFFESAQVVTFSRQFPRHLGYIRSFN EQIISITASAPRRSIRLFTTKMTATPEVQKSVEEIFTKLQGAADCNSLLKKHLTKDVV AKNKSKRTRLGATLLDVIQSGGENLDSGVGIYAPDAESYTLFADLFNPVIEEYHNGFK ATDTQPAMDLGEKNVGDLADLDPEGKFIVSTRIRCGRSLQGYPFNPCLSETNYKMMES RMKDIFSSITDPELKGTYYPLTGMDEETKKKLIADHFLFKEGDRFLKAANANRYWPNG RGIFHNEKKTFLVWVNEEDHLRIISMQNGGNVGEVLGRLIKGLNLVAAKAPFARHPRL GWLTFCPTNLGTTVRASVHIKLPKISAKDDFKKICSDMKLQIRGIHGEHSESKEGIYD ISNKQRLGLTEYQAVRQMYDGVKKLIELEKAAA" gene <96573..>97206 /locus_tag="CRE_30063" /db_xref="WormBase:WBGene00086075" mRNA join(<96573..96779,96829..>97206) /locus_tag="CRE_30063" /product="hypothetical protein" /db_xref="WormBase:CRE30063" /db_xref="WormBase:WBGene00086075" CDS join(96573..96779,96829..97206) /locus_tag="CRE_30063" /note="contains similarity to Interpro domain IPR000456 (Ribosomal protein L17); coded for by the following C. remanei cDNAs: DT933840" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12068.1" /db_xref="InterPro:IPR000456" /db_xref="WormBase:CRE30063" /db_xref="WormBase:WBGene00086075" /translation="MSAHRVAASLPRIGVTIGHTPQKLKTGGIEPSRRARLEVLRRIV TRTVREERVELKWNRAVEARPYVERLIQLGVERGPLDEYTAEMMEWWLPEKDLITKMH EVIVPRFQNRDSPFTSLFRLPPQRLQQFIQNKREVWKRYDIGVLEIDGNPFPAIQAAH QEQSDSILDVLLADALRNHQITLQEKLEASTESK" gene <97373..>99042 /locus_tag="CRE_30064" /db_xref="WormBase:WBGene00057088" mRNA join(<97373..97501,97549..98508,98557..98778, 98824..>99042) /locus_tag="CRE_30064" /product="hypothetical protein" /db_xref="WormBase:CRE30064" /db_xref="WormBase:WBGene00057088" CDS join(97373..97501,97549..98508,98557..98778,98824..99042) /locus_tag="CRE_30064" /note="contains similarity to Pfam domain PF00560 Leucine Rich Repeat; contains similarity to Interpro domain IPR001611 (Leucine-rich repeat); coded for by the following C. remanei cDNAs: DR779777, DR778315" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12086.1" /db_xref="InterPro:IPR001611" /db_xref="PFAM:PF00560" /db_xref="WormBase:CRE30064" /db_xref="WormBase:WBGene00057088" /translation="MFEEQPEVKEAIENNRFEIVLKNVRLESVSESANLSQKRVFENM PQLNLLSLTGCSLQNLSSSIKLCTNLISLVLPQNELKQIPDVLDCFPKLRFIDISHNS LDILPPSLSSCEHLESLILNNNALNESSFPDLSKLSNLHIFDASNNSLSKLPESLTSQ SLSAKLHTIILSHNAIEEIPSSLSNLKQLRELKVDENKVKDVPTVIDLLPKLKVLDIS KNVFSDSRFQKLANDKRAKLNAIIALAKKVGKPIEKKADEKEESNETAESDDVEKDSP ITIRTGIETLTVRRHPSVTEIRPYLVCCVFNDVDLNGDAFKKFIALQTKLHASALCEN RTLSAIGTHRFDSFQLPLCYMALPKDELYIRALNKKSSVSASELLDSLLRDAELARKR SKRSTVDPLHRYLHIVKDEDILACLVDAQQIVISLPPITNSDGTKLNVETTSIWVEVS SKQSLEACKKTMDEFVIASRIIFPSLSIDQVRVVDNETLVSIYPDKNDLPGVAVNRIS Q" gene <99237..>99974 /locus_tag="CRE_30065" /db_xref="WormBase:WBGene00057087" mRNA join(<99237..99325,99371..99544,99593..99839, 99885..>99974) /locus_tag="CRE_30065" /product="hypothetical protein" /db_xref="WormBase:CRE30065" /db_xref="WormBase:WBGene00057087" CDS join(99237..99325,99371..99544,99593..99839,99885..99974) /locus_tag="CRE_30065" /note="contains similarity to Pfam domain PF00132 Bacterial transferase hexapeptide (three repeats)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12054.1" /db_xref="PFAM:PF00132" /db_xref="WormBase:CRE30065" /db_xref="WormBase:WBGene00057087" /translation="MEYLWQNILQSVAKSNAHFRKRNKAMADNGGVSIASSTVVCVEA DIKGEVLIKEGCVVHPHVIIDASNGPIYIGDNNIFEEFSVIRNNSEGQPMIIGDSNIF EVHSKCSAKYVGSRNVIGVHAVLEDGCSVSDDCSVAARCRVYAKQNLEPFVAIYGQTN AHRTTITPNLTPTVQLEFLRKILPSYHHLYGKKKAAPGQ" gene complement(<100281..>101668) /locus_tag="CRE_30101" /db_xref="WormBase:WBGene00057086" mRNA complement(join(<100281..100692,100713..100805, 100853..101094,101128..101259,101308..101538, 101588..>101668)) /locus_tag="CRE_30101" /product="hypothetical protein" /db_xref="WormBase:CRE30101" /db_xref="WormBase:WBGene00057086" CDS complement(join(100281..100692,100713..100805, 100853..101094,101128..101259,101308..101538, 101588..101668)) /locus_tag="CRE_30101" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12026.1" /db_xref="WormBase:CRE30101" /db_xref="WormBase:WBGene00057086" /translation="MSKDKVSSKSSSRSELGSASFFFFKWTASSLEVYKKAIKTNYLT PIIAHCTRAREGDEDASKNFDYSELGANPRMVKDDREEIRARLKDAKNRVWTNEEAKP SLPISLVELSTIYRLKTLVKMCEKLWAIMGRMIEWFEANKSVCHRFAFNKVRESKEIF AHIRRMFESVCAMGEVFRLTSVNWKSCKYSNLLEPNDSEYTCSENSRLVITSPASSYV GEFQSQINYYRTLVYNVAISFGVVLEYIFSSVNREQYAIQQNNLLQTFLREIANVLQM LPPQYKDIQQRLKFSRRTASLLNDPPKNEFVFPIINNEVSDESKKESEKKLDQKKSAK VSSSKYYHGRTNDGKSGRSDRKSTRSPSLKSEPTQKSDKSKSKSKSKSKSKSKSKKKS TLKK" gene complement(<101932..>102930) /locus_tag="CRE_30102" /db_xref="WormBase:WBGene00057085" mRNA complement(join(<101932..102450,102502..102700, 102746..>102930)) /locus_tag="CRE_30102" /product="hypothetical protein" /db_xref="WormBase:CRE30102" /db_xref="WormBase:WBGene00057085" CDS complement(join(101932..102450,102502..102700, 102746..102930)) /locus_tag="CRE_30102" /note="contains similarity to Pfam domain PF04427 Brix domain; contains similarity to Interpro domain IPR007109 (Brix); coded for by the following C. remanei cDNAs: DY527765, DR777955, DR776966, DR779784, DY527767, DT936817" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12033.1" /db_xref="InterPro:IPR007109" /db_xref="PFAM:PF04427" /db_xref="WormBase:CRE30102" /db_xref="WormBase:WBGene00057085" /translation="MVRVEKIKTKKGKRVLDDRAPKTVENNKKTLFCRGTKTNEIINH AMMDLYDMKKPLTTKMDKHNPYHLFEDETPIVRAGAKFDTSMFVLGSNSKKKPNCLTF GRTYDGQLLDMAELRITAYKSASNFDTAKMTLGSKPCIVLEGAAFEADSDMKRIGNLM IDWFRGPKVDTVRLEGLETVVVFTAIDEKNIALRVYRPMLKKSATATPRVELTEMGPS LNFEVMRKKLADDALFKLACKKPKALMKKRRKNMSEDVFGNQLARVHVGKQRTDDIQT RKVKALRKTPLVEAAATNDVAMEE" gene complement(<103116..>108264) /locus_tag="CRE_30103" /db_xref="WormBase:WBGene00057084" mRNA complement(join(<103116..103178,103303..104290, 104340..104779,104825..104957,105005..105344, 105393..105540,105594..107456,107703..107993, 108042..108128,108178..>108264)) /locus_tag="CRE_30103" /product="hypothetical protein" /db_xref="WormBase:CRE30103" /db_xref="WormBase:WBGene00057084" CDS complement(join(103116..103178,103303..104290, 104340..104779,104825..104957,105005..105344, 105393..105540,105594..107456,107703..107993, 108042..108128,108178..108264)) /locus_tag="CRE_30103" /note="contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12042.1" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR013083" /db_xref="PFAM:PF00097" /db_xref="WormBase:CRE30103" /db_xref="WormBase:WBGene00057084" /translation="MRLRSEEILGNIALGRKMSKQQRRKGNAKNASSASAHGYLSQGG ETFVGLTPEMNIFEVASNNRLHYASEIDDETRIVMKKLTKKDCQTREKGLKELMNLVT TEKGSIESSYEHFCGLVPQLSTDGSPSVRLLTMKMISLFLIKLKKSASKGLKKIIPMV LFAKSDVTNGVAAAANAVIRDGFDADKKQQVMQLFAPITFDIAASIVQGKHDLAAPIE YDASEDKEARKSRLETQSLHVFLSYTKEMGSESNIWEEHAKKIFENSDYIRKAFAGKR ETLKVQLLNLCYKFQNNVDILLSIPSIIPYIQKNLDVQTITPECATAWEGMIVLLSNE KFQSAVSLHKGIFPRFLNVIRKKGNHWRVLKHYLLPAIVTLLKEMKNPDDDLKPLKSI MESFVDNLPWDTDISLNAIHCWFNTFSDFVRWILSNDRINVEIWETLSPLIIKITGQS MMFGTAEATESVSELLHWIIERKILAETHLQKLFESIESKITEVGKEKSRHLRDSLTA PGKNVELSVLHANLFSSPELADFNIIKNLAQSEKDYFDSTISKITNFSAIEKTEQFDL AQASDVVQLISLILDSNSENLKISVKNDYVGRRLLLKADSKIWENLLKQVSVPVFQEM INYWHEKRNGKAIAEAVSFLREKGIELDTNQAAENVDFLISLLQKLKSSDSNGDEKSI VSKLFAAIFESDEEPKPEHYQGMKEYLTADFNADHFFEKLFANSEENDIERILEIASR FDKLIGLCEDKTRSKIVENLLLSKGNSDIMIERLSFLELEVLTFSQYATVIPALLTRH VDHLDEQETKKHVTEFSRIALFNLSSRYHTATHQVFGWQMISVISCVEQRYCLSNLNE ELKNMREEIRKRVTRSDEVQNSSGISGFFADGYELPNKEKKFLRSQMSEESQNETPLS PIQFMEKVFKGTESENEFQIFQFDTSNNTNWLINLIYAKRFIQCGGDIFSAENLELRD FSLCGIVTVLDNSTDILTNSPHAFDEDPRLEALTALYMELYMVLTESIKSGNQTKETV EEWEEFYAPTIKNYFIRMFRTVRKDQQPTPFVRILLKALLSILTFPADVPNDNVTARE FVPELSVFKYTPFEESCISQAFGLFQSGIEHVQLIGYAVSKLLMPIMFNTENHKALEE SDETEVKVSNRPKLALPVMLSKAYPVDHNHPHVGPLLLDLALIPLESSDIINFRQEQR VAYCDAIDPFFKNALNALMLDQPFEFQQMPITCRIRKLSEQNIEINYNILAKSKEREY YLQSDYTASPVFFDKFASRLLFKSITLLPAAVRYFHKGMPKSYVSVFYEVVTKYASRL LVENELAKVSDAKFEGEMKVRTVPVTGQIIAEYIVEETKMKLTIELTPDYPLSVPNMT IDKAIVKNDKAKKWLMQLNAYLFHQNGAILEGIEMWKRNVDKGVEGVEDCTICMMTVH QQTHQLPKVRCKQCKNKFHSNCLYKWFESSNQSSCPLCRNNFT" gene <110761..>111828 /locus_tag="CRE_30066" /db_xref="WormBase:WBGene00057226" mRNA join(<110761..111209,111258..111322,111367..111566, 111616..>111828) /locus_tag="CRE_30066" /product="hypothetical protein" /db_xref="WormBase:CRE30066" /db_xref="WormBase:WBGene00057226" CDS join(110761..111209,111258..111322,111367..111566, 111616..111828) /locus_tag="CRE_30066" /note="contains similarity to Pfam domain PF10325 Serpentine type 7TM GPCR chemoreceptor Srz; contains similarity to Interpro domain IPR018817 (7TM GPCR, serpentine receptor class z (Srz), Nematode)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12077.1" /db_xref="InterPro:IPR018817" /db_xref="PFAM:PF10325" /db_xref="WormBase:CRE30066" /db_xref="WormBase:WBGene00057226" /translation="MYHLLIIGIRSRNDTTDYYDSIATIVQTYETIVFILNNISFICL LVYKYRKKADTTDKNLHEPIFNQLFYNSAICLVINDICTLVTFVTSDPEHLDAAGTFI YTVMVLLEVFFMLLASVMFAVITVFSFLASIQRIVILHLPNYKFIVTGNCLKLEIGLV YVSLIHYSFIVFQQEALQKELTYNMKQALYIYNIIILAMSLISGVIYFHIYRILRKLK TGDNGTYLLYQFVPIHTILLIHSVANLIGELLDQYIDNELQIRLKISVLFYFIFVPNI PAVVSLSYIVSQKNFRHVFTSIALPMWKEISS" gene complement(<112294..>114529) /locus_tag="CRE_30104" /db_xref="WormBase:WBGene00057083" mRNA complement(join(<112294..112356,112404..112507, 112554..113100,113145..113567,113613..114109, 114158..114286,114348..114421,114471..>114529)) /locus_tag="CRE_30104" /product="hypothetical protein" /db_xref="WormBase:CRE30104" /db_xref="WormBase:WBGene00057083" CDS complement(join(112294..112356,112404..112507, 112554..113100,113145..113567,113613..114109, 114158..114286,114348..114421,114471..114529)) /locus_tag="CRE_30104" /note="contains similarity to Debaryomyces hansenii Similar to sp|P25386 Saccharomyces cerevisiae YDL058w USO1.; TR:Q6BUQ9" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12055.1" /db_xref="WormBase:CRE30104" /db_xref="WormBase:WBGene00057083" /translation="MARLLTSLENETELKAIERNHNICEKKLANFQRQREEVSRSVRH LEACNTHVKRMAVITKEKLAKLKSDVEKHKNETHETVQRSNAYLNSSFEQVDFIRTNQ HVSLHCGPALSITLPYDSCIESCVQAENNLRKSLGEVSMSDEKLKSEKEALVKDQHSV SKAKSKAEKDIVNLKEEIERQTGIVKTLQASSIEVKSVLREAKEEVDKAIEKNAKTKE EMKKAQQTLDNLLQTIPTAESAKQNILAELDELFVDLKSDSPIDLSSYTNLSDCEEIL KLFEEWKTRQTENSNFSQPADVFDTDTPTSLEADLENVKKQTKHTLKNVEQMKELREK HVCTSEMLIRKKSGVEAVRKQIDDHTAVLNSLKVTEKAVKSSGSESISSKKEVKEVKI PQELLRQLEATRNEVPGPEPYQPYQTPVRIASTKANAKLNAKTITRVSAGSGSTRNMS VNGPQYPGIKLVAQKNNVDTPIPRKVSTAELDESANSVNSEDSSLISEDSGTTQDESA LNQLFSPLANEKRVSPPTPPVVEFSMAAHMNEFSQRQAKLKASQKIKEHVDVERRRSK GKNVDFDAEDENDKRIFADESALDISGVDSEGDEENEEDDGDEFDELFAPDDQDSMDQ STWGDDD" gene <115867..>117417 /locus_tag="CRE_30067" /db_xref="WormBase:WBGene00057082" mRNA join(<115867..115971,116650..116736,116781..116913, 117164..117228,117310..>117417) /locus_tag="CRE_30067" /product="hypothetical protein" /db_xref="WormBase:CRE30067" /db_xref="WormBase:WBGene00057082" CDS join(115867..115971,116650..116736,116781..116913, 117164..117228,117310..117417) /locus_tag="CRE_30067" /note="contains similarity to Pfam domain PF03351 DOMON domain; contains similarity to Interpro domains IPR005018 (DOMON related), IPR013050 (DOMON)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12038.1" /db_xref="InterPro:IPR005018" /db_xref="InterPro:IPR013050" /db_xref="PFAM:PF03351" /db_xref="WormBase:CRE30067" /db_xref="WormBase:WBGene00057082" /translation="MFTILLGTLCLSLLVSIGETAKCSAKSGDISARWQVVDSELTVE VTTNNIGNNEWSAVGFGPDMSDLNVVIFQVVDFKPSVVTGTTQGYGAPTLDASPSVTL QSLNYNSNTLVARFARPVGSLSTCQTWNFVTDGAIEDGSIGYHNAAPHSVEICADKCT RKIFS" gene complement(<118236..>121196) /locus_tag="CRE_30105" /db_xref="WormBase:WBGene00057081" mRNA complement(join(<118236..118386,118436..118663, 118705..118851,118905..119085,119604..120036, 120081..120198,120772..120972,121027..121093, 121151..>121196)) /locus_tag="CRE_30105" /product="hypothetical protein" /db_xref="WormBase:CRE30105" /db_xref="WormBase:WBGene00057081" CDS complement(join(118236..118386,118436..118663, 118705..118851,118905..119085,119604..120036, 120081..120198,120772..120972,121027..121093, 121151..121196)) /locus_tag="CRE_30105" /note="contains similarity to Pfam domain PF07724 ATPase family associated with various cellular activities (AAA); contains similarity to Interpro domains IPR013093 (ATPase AAA-2), IPR003593 (AAA+ ATPase, core)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12045.1" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013093" /db_xref="PFAM:PF07724" /db_xref="WormBase:CRE30105" /db_xref="WormBase:WBGene00057081" /translation="MIRIASSSYLQFVASANPAFQTSSRRLSTTGVDCKIKRGKSDRR VIHAKKITKKTDSLPFVLGEGFMTGKVILQNALTHPPPNGLTTRDGGGGGRGEKVQIL YPKEIVEHLNKYVVGQEEAKKCLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKI FRKQNPEIEEEYIPEYIEKSQRQILKDLEKRQDILLEKSNMILLGASGTGKTYMTQKL AEVLDVPIVICDCTTLTQAGYVGDDVDTVIQKLLAEARGDIERCQRGIVFLDEFDKIY TSSDPLHTSGNRDVSGKGVQQALLKLVEGSLVKVRDPLSPNSKVTIDTTNILFVSSGA FSNIEHIIARRMDKRSLGFSSASTSPHEESDQHTSEKLRDSDEEVVSKARDEMLKQCD QGDLIAFGMIPELVGRFPVIVPFHCLNKTHLMSVLTEPKGSLVAQTKKFFENENVELR FSPEAIEMIAEMAVKRKTGARALKSIVEKAVMNAKYEVPGSDVKCVEINDKSLKDQSF TIIENRSVIGKENKE" gene <121459..>122699 /locus_tag="CRE_30068" /db_xref="WormBase:WBGene00057080" mRNA join(<121459..121509,121568..121902,122138..122230, 122345..>122699) /locus_tag="CRE_30068" /product="hypothetical protein" /db_xref="WormBase:CRE30068" /db_xref="WormBase:WBGene00057080" CDS join(121459..121509,121568..121902,122138..122230, 122345..122699) /locus_tag="CRE_30068" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12093.1" /db_xref="WormBase:CRE30068" /db_xref="WormBase:WBGene00057080" /translation="MDGEITKCPYNTIYAPLKNKKPEGGVLCCVHGANCVYSNHNNTK KSDENQYVNLGSPKKEDPIASKLVEKLNKLVVEEKVPTRPKVETMSLYTLMEKEKTRK GKSEKEKKKKKEPTEQSESYVMLGPTSEGQTSTVLSTPAPPPPASEISIIDRQDDSDR RGEASSAYIGVLTLAEAENRLTNRGEFALYHLSHPAGRLDTLYESLPLMLIYRTTTKK NRHYSIRVSSENQYFVDCGYPNVRKHYSLNQLVMYYKVSATCEINPDDTSADSFSWWL E" gene <123508..>125942 /locus_tag="CRE_30069" /db_xref="WormBase:WBGene00057079" mRNA join(<123508..123636,124253..124364,124415..124479, 124521..124647,124691..124857,124902..125138, 125170..125259,125306..125595,125639..>125942) /locus_tag="CRE_30069" /product="hypothetical protein" /db_xref="WormBase:CRE30069" /db_xref="WormBase:WBGene00057079" CDS join(123508..123636,124253..124364,124415..124479, 124521..124647,124691..124857,124902..125138, 125170..125259,125306..125595,125639..125942) /locus_tag="CRE_30069" /note="contains similarity to Pfam domain PF05699 hAT family dimerisation domain; contains similarity to Interpro domains IPR000834 (Peptidase M14, carboxypeptidase A), IPR008906 (HAT dimerisation)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12080.1" /db_xref="InterPro:IPR000834" /db_xref="InterPro:IPR008906" /db_xref="PFAM:PF05699" /db_xref="WormBase:CRE30069" /db_xref="WormBase:WBGene00057079" /translation="MESVEMKSESSIPLNAKEKSRVLIPKKRNSKWLEELIQKGNIEI SPYVKNGTATLVLDFGKHVNDFLSSFVSYISIDEHGEPFLKILPYSFTPMFDVKTAIN VKDLLVQSGSKFGLMEHEVLSMHIVSDGASNLSSMGKRFFADWAICACHAIQKMSEKV LSPNVKNTFMYSSDELKKLNECSLLMGKCAKLALAVHKNKKLLHLSRLPTTYVETRWQ SCINCAKDILSLLPFLKHSSVCMISEAAKEIEEEIVTLNPIVKTLEQFEPLLAFFEVR SSFQSTVTFHLYLPMIQAMHNTFSQIEKETDDTTTRIINKSARIVTGEYLEKKISHLH LKATLLTPRLKKMSKMTQSHQQLVIKTMEILLKTTVFIQALDVLKSDIAKRVSLSSPP PAQSSEQLKKQPNKFSFYDDITTSDEVDEFDAYMKERVTESTPECPLKYWFSKKDDFP LMSKIAFNVFSTLSSETVCERAFSAVRRVVRDDRQRLNPELIENIMIGFFYSNNYK" gene complement(<126309..>127244) /locus_tag="CRE_30106" /db_xref="WormBase:WBGene00057078" mRNA complement(<126309..>127244) /locus_tag="CRE_30106" /product="hypothetical protein" /db_xref="WormBase:CRE30106" /db_xref="WormBase:WBGene00057078" CDS complement(126309..127244) /locus_tag="CRE_30106" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12023.1" /db_xref="WormBase:CRE30106" /db_xref="WormBase:WBGene00057078" /translation="MLSTAKTQVTKMSMTLTQLAEKYSRSVEKYQSIQNDALREHAEE ITREVQHIQVTMDRLKTNMEMLDKEFEASVKDRNPNQEELDGLDKYAGVYAEAYENAA YVRDNLEIELSRVTDTNYRPELAAPKKKYGDKKKSASDLLSRLRKEEAKSESIKDQRR LLDNVTAVVNQLLLLEKTTDNPLTRELIIRKFKYKIQKDAYGRKLDRAETPWTIRQLL TDLDNIITIEEELLRLLPKRAQDRNGKDKKNNACHEKPSSDNRVQEKKTKRCLICNRE NHYMAECKTMSYPLDSTKSLEKEDRCGQCLRKGHK" gene <128480..>129812 /locus_tag="CRE_30070" /db_xref="WormBase:WBGene00057077" mRNA join(<128480..128992,129349..129537,129594..>129812) /locus_tag="CRE_30070" /product="hypothetical protein" /db_xref="WormBase:CRE30070" /db_xref="WormBase:WBGene00057077" CDS join(128480..128992,129349..129537,129594..129812) /locus_tag="CRE_30070" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12092.1" /db_xref="WormBase:CRE30070" /db_xref="WormBase:WBGene00057077" /translation="MTPQRICALSASLPLSFHQEVHHLTATVSFINQYFITQKMANYT CPSCKKKKLKYLLKDSWKFFINPLYFILKHSCNYTAMFPIFSNMVFWHVFPIIAVRIP FLLYADVNTAIFAVVGNLWLSILYVGYILPCFKKYQGLCEIKVGLTGVFVINLILIAV CIWKDYDPIWKLCYAVYHNVVPLMCCSLIFSSSYFNEYYVQVPYDKMPFAKLNLYVVV LGIIHCMLAVLVVRNVPNYPECLCMLAASFFFSCDLYCVYTVKSYMLREHIHYKWQRK PEEGVYKHITVGKLKVDKISPVMNLDVTTV" gene <134603..>136207 /gene="Cre-scrt-1" /locus_tag="CRE_30071" /db_xref="WormBase:WBGene00057076" mRNA join(<134603..134692,134766..135243,136110..>136207) /gene="Cre-scrt-1" /locus_tag="CRE_30071" /product="CRE-SCRT-1 protein" /db_xref="WormBase:WBGene00057076" CDS join(134603..134692,134766..135243,136110..136207) /gene="Cre-scrt-1" /locus_tag="CRE_30071" /note="contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type; contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR013087 (Zinc finger, C2H2-type/integrase, DNA-binding), IPR007087 (Zinc finger, C2H2-type)" /codon_start=1 /product="CRE-SCRT-1 protein" /protein_id="EFP12037.1" /db_xref="InterPro:IPR007087" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR015880" /db_xref="PFAM:PF00096" /db_xref="WormBase:CRE30071" /db_xref="WormBase:WBGene00057076" /translation="MSKQFEIPPFPVVTTPFLLRYLSALFDAAQRKYNTQVEFIAVPY LPDVTFSFPPPPPTLQHAIQMLSDDESSPSVSPSTTVATYSTPSSPDRKAKTKFGSYP PVGLKSFIPLLYLTVFQACQCKVCGKEFSRQWLLQGHLRTHSKFIFIIVNLIFCFFFS AGEKPFQCEICCKRFADKSNLRAHVQTHSGTKPHKCSRCGKSFALKSYLSKHEESKCL VRQ" gene complement(<136576..>140477) /gene="Cre-aat-5" /locus_tag="CRE_30107" /db_xref="WormBase:WBGene00057075" mRNA complement(join(<136576..136627,136668..136769, 137125..137230,137278..137608,139011..139211, 139267..139535,139741..139872,139965..140028, 140074..140264,140312..>140477)) /gene="Cre-aat-5" /locus_tag="CRE_30107" /product="CRE-AAT-5 protein" /db_xref="WormBase:WBGene00057075" CDS complement(join(136576..136627,136668..136769, 137125..137230,137278..137608,139011..139211, 139267..139535,139741..139872,139965..140028, 140074..140264,140312..140477)) /gene="Cre-aat-5" /locus_tag="CRE_30107" /note="contains similarity to Pfam domain PF00324 Amino acid permease; contains similarity to Interpro domains IPR004841 (Amino acid permease-associated region), IPR002293 (Amino acid/polyamine transporter I)" /codon_start=1 /product="CRE-AAT-5 protein" /protein_id="EFP12076.1" /db_xref="InterPro:IPR002293" /db_xref="InterPro:IPR004841" /db_xref="PFAM:PF00324" /db_xref="WormBase:CRE30107" /db_xref="WormBase:WBGene00057075" /translation="MDESNKMGFLGATSYVIGNIIGSGIFITPASILRNVDSIGLSLL IWVLCAVIAILGAICYIELGTSIREAGCDFAYICYVKWYSIAFAFMWVSVLMTYPATI AICAETFGQYLIEGLKQYYEIDDALVPTCQKLFAYSLLFLVTWMNFFELSKFAARFQI LATIAKLFSCLLIIGTGFYFYFVKGWHGYLENPMQGSKYGTGNLILGFYGGLWAFSGW DVLNYSTGEIKHPKRNVPFALLTGISVVTAIYVAINVAYFVVLDVESVKQSDAVAAIF SRETLGDFANIIPFLIGILLIGSLNSNLFSGSRYMYAAARQGHLPACFSCVNGETESP RVAVLAQSILALIISYVGDLDTLITYVMFGFWAQRIFSLVALLIIRHNHIPVHPDAVR VPLFCIYLFLTITVALVIIPIFYEFQSTALAIAICLFGFVLYYIFIHKAIFPRWLVTL NKKVTLWCCILFDCLPDVKGGVHLLASDSSQALLTERLSSTRLSDDSLPDLHSDEKNI MRRNGSAAGLKMLISSVPSSLVDLISDVQ" gene complement(<146720..>148027) /gene="Cre-fbp-1" /locus_tag="CRE_30108" /db_xref="WormBase:WBGene00057074" mRNA complement(join(<146720..146803,146904..147663, 147786..>148027)) /gene="Cre-fbp-1" /locus_tag="CRE_30108" /product="CRE-FBP-1 protein" /db_xref="WormBase:WBGene00057074" CDS complement(join(146720..146803,146904..147663, 147786..148027)) /gene="Cre-fbp-1" /locus_tag="CRE_30108" /note="contains similarity to Pfam domain PF00316 Fructose-1-6-bisphosphatase; contains similarity to Interpro domain IPR000146 (Inositol phosphatase/fructose-1,6-bisphosphatase); coded for by the following C. remanei cDNAs: DR782169, DY528316, DR777054" /codon_start=1 /product="CRE-FBP-1 protein" /protein_id="EFP12088.1" /db_xref="InterPro:IPR000146" /db_xref="PFAM:PF00316" /db_xref="WormBase:CRE30108" /db_xref="WormBase:WBGene00057074" /translation="MKLYRLIIENKTFSKLFSLNMPSETSQFGIETDAITLARFVLQE QRKHADASGELTSLLTNMLVAIKAIASATQKAGLAKLYGIAGSTNVQGEEVKKLDVLS NELMINMLKSSYTTCLLVSEENDELIEVEEKRRGKYIVTFDPLDGSSNIDCLVSIGTI FGIYKKQGDGPATVEDVLKPGKEMVAAGYALYGSATMVVLSTGDGVNGFTLDPSIGEF ILTHPNMKCKEKGSIYSLNEGYAKTWSKGFAEYIRTRKEPEPGKKAMGQRYVGSMVAD VHRTILNGGIFLYPPTASAPNGKLRLLYECNPMAYIIEQAGGMATTGKERILDIQPTQ IHQRAPIILGSKLDVEEALEYLNKYDN" gene complement(148624..148707) /locus_tag="CRE_32381" /db_xref="WormBase:WBGene00186789" tRNA complement(148624..148707) /locus_tag="CRE_32381" /product="tRNA-Leu" /db_xref="WormBase:CRE32381" /db_xref="WormBase:WBGene00186789" gene complement(<149643..>154561) /gene="Cre-ptr-12" /locus_tag="CRE_30109" /db_xref="WormBase:WBGene00057073" mRNA complement(join(<149643..149780,149839..150095, 150743..150930,150995..151114,151164..151409, 151455..151624,151672..151815,152410..152910, 153347..153530,153623..153717,153767..153946, 153999..154290,154340..154484,154528..>154561)) /gene="Cre-ptr-12" /locus_tag="CRE_30109" /product="CRE-PTR-12 protein" /db_xref="WormBase:WBGene00057073" CDS complement(join(149643..149780,149839..150095, 150743..150930,150995..151114,151164..151409, 151455..151624,151672..151815,152410..152910, 153347..153530,153623..153717,153767..153946, 153999..154290,154340..154484,154528..154561)) /gene="Cre-ptr-12" /locus_tag="CRE_30109" /note="contains similarity to Pfam domain PF02460 Patched family; contains similarity to Interpro domains IPR003392 (Patched), IPR000731 (Sterol-sensing 5TM box); coded for by the following C. remanei cDNAs: DR778887" /codon_start=1 /product="CRE-PTR-12 protein" /protein_id="EFP12074.1" /db_xref="InterPro:IPR000731" /db_xref="InterPro:IPR003392" /db_xref="PFAM:PF02460" /db_xref="WormBase:CRE30109" /db_xref="WormBase:WBGene00057073" /translation="MTVDEKTPATKGAVKTTRLVRGIAWFFEKWSHFVANNAIALIVI CVVLTLIGTFKVATTPNENDITGYTPYGARARDEFDVMTDFFAHNGNGIAMFVLILPT RHESVLHPDVLREALRLENILSSNFTMPTAEGKQENYQEFCTNFCQINEPFVQFARSY LTELDNSKNGTDLSERISLNYPITSIYSRKMSIQPNFFGIEMINETAKTITNIRSSKL IALQLRSERKEGWNSQGIKDFEMSITNYFEKEFKSPEIRVLTLSTSYVEAEVVRAGMS LLPFLVVGFVIMAIVSSVTTFFSALYMNQVSIHKFSLAIAACICPFMACGTALGALFF CGVRFGSILCVTPFLVLAIGVDDAYLMIHSWQRVTAERRKHPVEGDSPGSRLSEVLVD TGPAILISALTNIFADVAGCFTSSPEISLLGYGNMACIFCDFLYQITFYSAIMTITGY FEMKDEAQKRHIKTIACGAENDDSSCTSSSVESFDVVVKRRVATFLETYICLLTNAFF QFLVILTWIIFLVISIYGITIMNINLSPRKLFMEDSSLREMDDLRVKYVVPNYYLANV FVRNPGDLTDGKRLERLNNFVDEMEHLNGSWGALGTNYFVRDFIDFQAAMNEEEESEG GEEEKSIVKRGGIDMNNIPMFLEWPEYLFWKGFVQYHSESNHTVLDRFFITFAIHGKN LQEWPARGDALREWRKVVDKYSTEFGLSVFSDDGIYVDLIENMPTDAWQSAVATLACM AFICFVFMYDVPTVIVATSIIASIMTGILGILSLTGTDLDPIVMSALIISIGFSVDIP AHISYHYHTSSSENGIRDRLHQTLSSVGFPALQASFSTSLCVLALKCSSIYMSNAFVK TMITCMILCVFHALVLLPTLFAIFSRIFSVFHVKTSPIESK" gene 150251..150333 /locus_tag="CRE_32252" /db_xref="WormBase:WBGene00186660" tRNA 150251..150333 /locus_tag="CRE_32252" /product="tRNA-Leu" /db_xref="WormBase:CRE32252" /db_xref="WormBase:WBGene00186660" gene 153184..153267 /locus_tag="CRE_32625" /db_xref="WormBase:WBGene00187033" tRNA 153184..153267 /locus_tag="CRE_32625" /product="tRNA-Leu" /db_xref="WormBase:CRE32625" /db_xref="WormBase:WBGene00187033" gene complement(<163551..>163745) /locus_tag="CRE_30110" /db_xref="WormBase:WBGene00086069" mRNA complement(<163551..>163745) /locus_tag="CRE_30110" /product="hypothetical protein" /db_xref="WormBase:CRE30110" /db_xref="WormBase:WBGene00086069" CDS complement(163551..163745) /locus_tag="CRE_30110" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12025.1" /db_xref="WormBase:CRE30110" /db_xref="WormBase:WBGene00086069" /translation="MVGEVKVKDKKYRTHVYQNDPHGILLDPLLSCEPILALDHYSSI TTVRLLCPLYFSTEKENTNL" gene complement(<165263..>166142) /locus_tag="CRE_30111" /db_xref="WormBase:WBGene00057072" mRNA complement(join(<165263..165476,165520..165827, 165878..165968,166018..>166142)) /locus_tag="CRE_30111" /product="hypothetical protein" /db_xref="WormBase:CRE30111" /db_xref="WormBase:WBGene00057072" CDS complement(join(165263..165476,165520..165827, 165878..165968,166018..166142)) /locus_tag="CRE_30111" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12049.1" /db_xref="WormBase:CRE30111" /db_xref="WormBase:WBGene00057072" /translation="MLRCLLLLLNFCLPLSLALSAQLIPPRTAYDDFIDVIRTSDDCM ILYQYKLFGLHQTNRTVHAANVQKDLWEKYLEMRHKGFPDDFIESVLSVYCQAKSYVP MALNLWKPSADLTGNFTWDLTTDAPENDFYQHAKEEEEVLLEHFEARKNIRKALDAAT AKENKVLNLDSDIRQVCRVAAFILVISLAMSIHNFLRMFYAEEEEDLEDDYLIQRFGI FGEVIQIVVLAACLTSILIYMNNDIPQ" gene <167293..>168372 /locus_tag="CRE_30072" /db_xref="WormBase:WBGene00057071" mRNA join(<167293..167427,167490..167513,167572..167778, 167953..>168372) /locus_tag="CRE_30072" /product="hypothetical protein" /db_xref="WormBase:CRE30072" /db_xref="WormBase:WBGene00057071" CDS join(167293..167427,167490..167513,167572..167778, 167953..168372) /locus_tag="CRE_30072" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12028.1" /db_xref="WormBase:CRE30072" /db_xref="WormBase:WBGene00057071" /translation="MKIVEIEDELRIGINQRHRIERDQKSRENQGEKKKKEEIQVPDQ KSLPTEPINEGMDVTQWENTPFKEEAAGNVVQDPNEFVVDKVGEGTPFLAEQKQVMLQ KGEHLKDKPMYTLIFLTVEFILALTVLIVWSCFLDKNEFTPILFCFTNIIILIIVLLI LLVIQFGRFNVVKEDLDDDFRYRIPYHWKYWVSRLMNQEKIENFFQICVFHILRFILI CSNISIAALDNDFDGGVITMVSAMPIMLIISAGHVFFALRPQG" gene <168651..>169721 /locus_tag="CRE_30073" /db_xref="WormBase:WBGene00057070" mRNA join(<168651..168863,168909..169007,169052..169243, 169374..>169721) /locus_tag="CRE_30073" /product="hypothetical protein" /db_xref="WormBase:CRE30073" /db_xref="WormBase:WBGene00057070" CDS join(168651..168863,168909..169007,169052..169243, 169374..169721) /locus_tag="CRE_30073" /note="contains similarity to Pfam domain PF02077 SURF4 family; contains similarity to Interpro domains IPR002995 (Surfeit locus 4), IPR011592 (Surfeit locus 4-related)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12084.1" /db_xref="InterPro:IPR002995" /db_xref="InterPro:IPR011592" /db_xref="PFAM:PF02077" /db_xref="WormBase:CRE30073" /db_xref="WormBase:WBGene00057070" /translation="MDVHVAISRCEDYSETVRMRVKGTPDKSKTQVARKTKKVLPTIG RLLLVSTFIEDAIRLCFNTREHADWFANLWGLNNHFAYFLTVVMALNLICGTLFVMLR YKVPASCTVLAVTVFSQVVLYELYSTYHILTRNMSILAAILLLVTENMLRKPQKYSQL PRDENEFEVTSVMLCACRLFLNLMLVSMVHFDMSYKRLFLCLISYSMMFFVWTGYKTR MMSFILSGWLLAYNIMLNDFWNRDSVSSQWVRYDFFQALSAVGGLLLLIHTGPGELSI DEMKKKW" gene <171474..>172138 /locus_tag="CRE_30074" /db_xref="WormBase:WBGene00057069" mRNA join(<171474..171654,172023..>172138) /locus_tag="CRE_30074" /product="hypothetical protein" /db_xref="WormBase:CRE30074" /db_xref="WormBase:WBGene00057069" CDS join(171474..171654,172023..172138) /locus_tag="CRE_30074" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12073.1" /db_xref="WormBase:CRE30074" /db_xref="WormBase:WBGene00057069" /translation="MKFVVCRCRKKDRGAFLEDSDAPVYDPTLKLDISMTRVIPVTFT KYNPPNLLDAPTNGSTEIIELPDFFTSPIIATMSAAHQHACLINHRVENYEFFE" gene complement(<172890..>173605) /locus_tag="CRE_30112" /db_xref="WormBase:WBGene00070645" mRNA complement(join(<172890..173547,173592..>173605)) /locus_tag="CRE_30112" /product="hypothetical protein" /db_xref="WormBase:CRE30112" /db_xref="WormBase:WBGene00070645" CDS complement(join(172890..173547,173592..173605)) /locus_tag="CRE_30112" /note="contains similarity to Pfam domain PF00078 Reverse transcriptase (RNA-dependent DNA polymerase); contains similarity to Interpro domains IPR000477 (RNA-directed DNA polymerase (reverse transcriptase)), IPR015706 (RNA-directed DNA polymerase (reverse transcriptase), related), IPR003286 (Nematode reverse transcriptase-like)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12063.1" /db_xref="InterPro:IPR000477" /db_xref="InterPro:IPR003286" /db_xref="InterPro:IPR015706" /db_xref="PFAM:PF00078" /db_xref="WormBase:CRE30112" /db_xref="WormBase:WBGene00070645" /translation="MIPHNSLVQVVTNYKIILKTHGSLDVVFFDFRKAFDQVPHNLLL NKLALFDIPPLFISWFSDFLTSRSFSVKVNSTTDPSSALIHSGVPQGSVAGPLLFLLY INDLLISLQSIPYLYIAAYADDIKIYSHLPSSLQAGIDLVSDWAVSNDLPLAHSKTGL LHLGSLNPSHRFHIVGSPILDSHSVRDLGILFEPDLKFSAHIIKSVSISSSSSLFPNP QILQV" gene <174655..>179069 /locus_tag="CRE_30075" /db_xref="WormBase:WBGene00057068" mRNA join(<174655..175095,176159..176700,177545..177743, 177980..178218,178664..178940,178989..>179069) /locus_tag="CRE_30075" /product="hypothetical protein" /db_xref="WormBase:CRE30075" /db_xref="WormBase:WBGene00057068" CDS join(174655..175095,176159..176700,177545..177743, 177980..178218,178664..178940,178989..179069) /locus_tag="CRE_30075" /note="contains similarity to Pfam domain PF00069 Protein kinase domain; contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12048.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR017442" /db_xref="PFAM:PF00069" /db_xref="WormBase:CRE30075" /db_xref="WormBase:WBGene00057068" /translation="MSAKASFNQPLKSLTFCGGENIAALFDNDIQLAWSSTETHFSTI EVDRSSSDVFGTCDCKCIMQFIKKRTAISAIFVTDKTTGINRLDLHSSNLIPIFGLQD EEFSAACRNDDTEMMFAATWNKHSKRTTVKMIDPRTPNGISDILSFQQSHVSRMASSA ENEFILEQNNGLLKLYDIRKTTPCRCTFDSRGQCKSIHENRQCVFLEMDKDVRLLNKS SGEETTRYVLIGVGLNKNSSFCRFSLKKNHGLCGVLEGNESEDIFLVINKLKSSSVQV YGVNEYNNPKGKYVISYQAHQSPTTHFSKYRRDLYASADQDGNVWIQYGDTRAPSMKD AARKLYKENQHKKKNEKSDKGLQGALMDVKRHEKKFIKAKIEDSEKSVETPTSRIDDY CFSTTAVYLVMEKMDGSVEDLLEQNGKLDRYDSAMIMKSVGTGLQYCHRKGMIHRDVK PGNILLGSDGAIKLGDFGVATFEEGRTVCGTPGYIAPEVVWNQTHTCLVDSWGLGAVL VELLTGNPAFRNSDVPDFNNKSTDRWKLDKKVTFDPDLDAVINGLLQIKESERWTMRQ LLESNWLFREQENKEIEIIRNIKCHL" gene <179530..>179691 /locus_tag="CRE_30076" /db_xref="WormBase:WBGene00086074" mRNA <179530..>179691 /locus_tag="CRE_30076" /product="hypothetical protein" /db_xref="WormBase:CRE30076" /db_xref="WormBase:WBGene00086074" CDS 179530..179691 /locus_tag="CRE_30076" /note="contains similarity to Pfam domain PF02077 SURF4 family; contains similarity to Interpro domains IPR002995 (Surfeit locus 4), IPR011592 (Surfeit locus 4-related)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12059.1" /db_xref="InterPro:IPR002995" /db_xref="InterPro:IPR011592" /db_xref="PFAM:PF02077" /db_xref="WormBase:CRE30076" /db_xref="WormBase:WBGene00086074" /translation="MSIMLNDFWNRDSVSSQWVRYDFFQALSAVGGLLLLIHTGPGEL SIDEMKKKW" gene <185192..>189748 /locus_tag="CRE_30077" /db_xref="WormBase:WBGene00057067" mRNA join(<185192..185359,186952..187034,187312..187396, 188412..188526,189570..>189748) /locus_tag="CRE_30077" /product="hypothetical protein" /db_xref="WormBase:CRE30077" /db_xref="WormBase:WBGene00057067" CDS join(185192..185359,186952..187034,187312..187396, 188412..188526,189570..189748) /locus_tag="CRE_30077" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12078.1" /db_xref="WormBase:CRE30077" /db_xref="WormBase:WBGene00057067" /translation="MKLEDAVKAASQLQRNESVTSSSAGDVNEIPKTNGSSHPIVRRK SGMIGKKFPSLQVSHYPVLLLSNSSDTTTNPHPSVTWRTSQQAETEPKPSELDEAPPK IRKSSSGLRQCSVSARSSLDFRDRPRFVRTSTTTSTLSPTSEKPPMPIVKRSCKNNAK LIIVRLENFNLKLFLHNWYNFEHATSHVFMPKTTLNGNCFDTECMYMYY" gap 196804..196813 /estimated_length=10 gene <212361..>213550 /locus_tag="CRE_30078" /db_xref="WormBase:WBGene00086077" mRNA join(<212361..212435,212489..212594,213391..213473, 213539..>213550) /locus_tag="CRE_30078" /product="hypothetical protein" /db_xref="WormBase:CRE30078" /db_xref="WormBase:WBGene00086077" CDS join(212361..212435,212489..212594,213391..213473, 213539..213550) /locus_tag="CRE_30078" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12071.1" /db_xref="WormBase:CRE30078" /db_xref="WormBase:WBGene00086077" /translation="MSASPMLQHMYSLDESSLMGVSHSPYRQQRKRRAGISGATTSVQ RDGPFACAGGTGYSSAGFSNGRGFPPLGGRSPQSSFDSNQDVAQGKT" gene <216856..>217493 /locus_tag="CRE_30079" /db_xref="WormBase:WBGene00086072" mRNA join(<216856..216954,217157..217237,217290..>217493) /locus_tag="CRE_30079" /product="hypothetical protein" /db_xref="WormBase:CRE30079" /db_xref="WormBase:WBGene00086072" CDS join(216856..216954,217157..217237,217290..217493) /locus_tag="CRE_30079" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12051.1" /db_xref="WormBase:CRE30079" /db_xref="WormBase:WBGene00086072" /translation="MMFSQRRTGSRIDLLDPMIRGQKPRRKRVDYDQISMNWMRMNGL GPSLRPFLNGGNHTPKKTIIHNSQSTTQISRLGSLRRMHAAEASIDGKLSLSGTQADV ANACGGGSVVTETRIVVMCHESSRE" gene <223601..>227374 /locus_tag="CRE_30080" /db_xref="WormBase:WBGene00057066" mRNA join(<223601..224408,224503..224715,224777..224922, 224973..225211,225570..226002,226052..226179, 226226..226295,226403..226538,227274..>227374) /locus_tag="CRE_30080" /product="hypothetical protein" /db_xref="WormBase:CRE30080" /db_xref="WormBase:WBGene00057066" CDS join(223601..224408,224503..224715,224777..224922, 224973..225211,225570..226002,226052..226179, 226226..226295,226403..226538,227274..227374) /locus_tag="CRE_30080" /note="contains similarity to Pfam domains PF02888 (Calmodulin binding domain), PF03530 (Calcium-activated SK potassium channel), PF07885 (Ion channel); contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR004178 (Calmodulin-binding), IPR015449 (Potassium channel, calcium-activated, SK), IPR011996 (Potassium channel, calcium-activated, SK, conserved region), IPR013099 (Ion transport 2)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12032.1" /db_xref="InterPro:IPR003280" /db_xref="InterPro:IPR004178" /db_xref="InterPro:IPR011996" /db_xref="InterPro:IPR013099" /db_xref="InterPro:IPR015449" /db_xref="PFAM:PF02888" /db_xref="PFAM:PF03530" /db_xref="PFAM:PF07885" /db_xref="WormBase:CRE30080" /db_xref="WormBase:WBGene00057066" /translation="MNSIFSFLYLSFFQSLSSQCHPSSSLFFRKNFIILFELSPSFFT KPPPTTTRSSSSSPTVPLRSTQSSASLLTRPIHETMLGSPVTDNPDDPLSLNGANGAP KSILRAPRLTTAPKQLSFDVPASPTPTAKSSCVSTSGSYHMFERPSRLRAGKFSYGGL TSNHNHHQGHISITANGTPVFAYNGGGGGSHNPSPSSMSPLGTMRRDPSKWRLSELKQ RSNSESMFRNFDPEMLADGGRRMSMAYLPSREQALLRRILGPQGLSWISHDRETASRK SVSIAYSNDLEAGGKGGGTGDDSTTPLMDEKDENSGGRLIRREQLHEKRRMVSDKALA FAIIGIILMIIENELRTSAVLRPGSLFSQILKLSIIGTTAILLTFVGYFHVIEIQLFM NANAAEDWMVALSFRRIYKIILELFVCMLCPIPIEMLGPFMIDKVHDRTLYAVNVLLS IMMFTRLYWLCRVMLLHSRLFTDASSRSIAGLNRVNFNARFILKTLMTMCPGTMLMIF TAFLWVVAGWILRLCERDIQNPNPDVLKDFNYINSIWLVAITFLSVGYGDIVPKTYCG RSMAVVTGILGTCASSMVVAVIARKLELTRAEKHVHNFMQDTQLTRQLKHSAANVLRE TWFIFKYRKLIEKPDLGKIRKHTRKFLLAIYEMRRVRRDQRKLAENLVSLGDVAKTSS NTYELVHDVHSTQEGLSLRITAIEHQLSDISREISSLAELLRGSNEQRKKSVVIGDSA PATPQPILKRKVGELRV" gene <227823..>228771 /locus_tag="CRE_30081" /db_xref="WormBase:WBGene00057065" mRNA join(<227823..228170,228565..>228771) /locus_tag="CRE_30081" /product="hypothetical protein" /db_xref="WormBase:CRE30081" /db_xref="WormBase:WBGene00057065" CDS join(227823..228170,228565..228771) /locus_tag="CRE_30081" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12087.1" /db_xref="WormBase:CRE30081" /db_xref="WormBase:WBGene00057065" /translation="MTSFFNTIVILVSFPLIYFEYGGSDDYSNKCSSQFENLENVIDD IISGQYASMKIHESTEKLHLACAETVHCFEKNIGEESDSEHQEWFKFFRIQIKPICDS LRYQSGLFFKCISSFQTTQFELNSNSSTFQSQNTFDNCELTDIEYQELYDLVEQKCGF WALKDMDDHEDYVRSTMCKNKFII" gene <229308..>229848 /locus_tag="CRE_30082" /db_xref="WormBase:WBGene00086079" mRNA join(<229308..229646,229720..>229848) /locus_tag="CRE_30082" /product="hypothetical protein" /db_xref="WormBase:CRE30082" /db_xref="WormBase:WBGene00086079" CDS join(229308..229646,229720..229848) /locus_tag="CRE_30082" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12081.1" /db_xref="WormBase:CRE30082" /db_xref="WormBase:WBGene00086079" /translation="MTSLFFTILILASFPLIYFYYGGSDDYSHNCSSQFENMQNVLDG ILSGQSMKIHDPTEKLHLACTETIDCFEKNIGEESDPGYQEWSKLLVEVKEHCDSLCY YTEKYFKCISKSQTTQSELKSNSSTLQNQITSDSSEFTDDGPRGLREKHYVQE" gene <231376..>231696 /locus_tag="CRE_30083" /db_xref="WormBase:WBGene00086081" mRNA <231376..>231696 /locus_tag="CRE_30083" /product="hypothetical protein" /db_xref="WormBase:CRE30083" /db_xref="WormBase:WBGene00086081" CDS 231376..231696 /locus_tag="CRE_30083" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12090.1" /db_xref="WormBase:CRE30083" /db_xref="WormBase:WBGene00086081" /translation="MTSLFYTILILASFPLIYFYYGGSDDYSHNCSSQFENMQNAING MTSEQCASMKIPAWTEKLYMTCAETVDCFEKNIGEESDPQHQEWSKPSVEVKEMCDSM MRLK" gene <232008..>232732 /locus_tag="CRE_30084" /db_xref="WormBase:WBGene00057064" mRNA join(<232008..232238,232344..232472,232544..>232732) /locus_tag="CRE_30084" /product="hypothetical protein" /db_xref="WormBase:CRE30084" /db_xref="WormBase:WBGene00057064" CDS join(232008..232238,232344..232472,232544..232732) /locus_tag="CRE_30084" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12075.1" /db_xref="WormBase:CRE30084" /db_xref="WormBase:WBGene00057064" /translation="MSFKQFWLLFLITISIVSIVQCSPIPSQNPPNSPEQCLTKVNKM KNILHEIKLEQKRFRNVTIANMELFYEMCIDVTNCIDTIVMPDFLRGLLGIGTMFLKS ACDEYGFNVGPFSKCMEKTKFDLTTLKNTTTDQQPRPKCELSNDEFSELQKFVQKECG DEVLKDMMRNEERVKSMLCSDK" gene complement(<232809..>234125) /locus_tag="CRE_30113" /db_xref="WormBase:WBGene00057063" mRNA complement(join(<232809..233192,233598..233654, 233751..233876,233922..>234125)) /locus_tag="CRE_30113" /product="hypothetical protein" /db_xref="WormBase:CRE30113" /db_xref="WormBase:WBGene00057063" CDS complement(join(232809..233192,233598..233654, 233751..233876,233922..234125)) /locus_tag="CRE_30113" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12052.1" /db_xref="WormBase:CRE30113" /db_xref="WormBase:WBGene00057063" /translation="MILFIFLSLIPLVSTGYHHPSQDCSGFFKYENSCNQLILDLIHD WSTAKPIPSVKISKSLYSDCRSALECVKMIDCEEKNEEISKKLADLAELCSGIAAFSS SFGSCITVIQSKESSQEYPCLKYWNNPFQNSYSQCTSVSLPELILSELEPTFSNCISS QPNFSFQYQTPTCEFFESEYDCAEMIVENQCGLRSLQEMNMNRKFITEFFGCKMPVES RNETKTIYATGKIVLDEGKESMLRGALNARQDDSGQDD" gene <235720..>237823 /locus_tag="CRE_30085" /db_xref="WormBase:WBGene00057062" mRNA join(<235720..236039,236120..236325,236376..236597, 236649..237226,237272..>237823) /locus_tag="CRE_30085" /product="hypothetical protein" /db_xref="WormBase:CRE30085" /db_xref="WormBase:WBGene00057062" CDS join(235720..236039,236120..236325,236376..236597, 236649..237226,237272..237823) /locus_tag="CRE_30085" /note="contains similarity to Arabidopsis thaliana Glycine-rich protein.; TR:O65450; coded for by the following C. remanei cDNAs: DR777678, DY526512, DR776491" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12034.1" /db_xref="WormBase:CRE30085" /db_xref="WormBase:WBGene00057062" /translation="MGRKPTQEELAAMIDKGLGTLLTPREIEDRKKSNQLAPEFKVDE GFGVYRVTFEGEEYFCVTNILCNVCQRLDGGKVKRCEAHKRKKRGRKGKKGDGEVVDD MSDRDKIGGLRHVNDDEDEEDKIEGAFTPDAVMTPGIGGAIIIVPVDARNNERAGPPA KGLNHVKGVLVRGAGNIPQFIPNDRLTKAHKLRFDNYLEGELNLINGKEIFVPNNLGA AKMDGKNSQAIANAAVADKVDQKIVDAIGKDLIVAVQVDVADNGMPVMRVLEGKPKDK ETPVGIIVKTADDQIQFVQITGKELGGGKDAKLMPCTIPENAKMGDVVADLYINADGK AVAAKPGEIPPGGKAIGQVVVGQNDQLVFVPTGANKDECIKNGAQMTPAMKEKLELAQ ANVQATVTGQTPEHIQGQVNRIGEAEAAAASMNAQKNNSGGPPPGASAGEVRSVGFGA QQFGGSQFARPTPAGGGGAGGGGGGGNGKVYSNGEVRSVAFGAQGAGGSVFAKPSGTG GGYAGAGGKAGGASGGAGGGGGGAGGGGAKGAGGGGGGGAGGGGANEVRSVAFGGNQY GASVMAKGSGGGGAGAAKNSAGAGKKANNNNNNNYGSGAEVKSVGFGAQQYGASVFMR K" gene <241525..>241927 /locus_tag="CRE_30086" /db_xref="WormBase:WBGene00086080" mRNA join(<241525..241639,241688..241839,241919..>241927) /locus_tag="CRE_30086" /product="hypothetical protein" /db_xref="WormBase:CRE30086" /db_xref="WormBase:WBGene00086080" CDS join(241525..241639,241688..241839,241919..241927) /locus_tag="CRE_30086" /note="contains similarity to Pfam domain PF00106 short chain dehydrogenase; contains similarity to Interpro domains IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR016040 (NAD(P)-binding)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12082.1" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR016040" /db_xref="PFAM:PF00106" /db_xref="WormBase:CRE30086" /db_xref="WormBase:WBGene00086080" /translation="MEDFLESLFVTLKAILLLILSTIRNLFPTGFLPRKDVRGQTVLI TGSGSGLGRLMSYEFGKLGARIVLWDINEGGNLETLKELESRGVEGV" gene complement(<242437..>245655) /gene="Cre-gla-3" /locus_tag="CRE_30114" /db_xref="WormBase:WBGene00057061" mRNA complement(join(<242437..242630,242681..243436, 243484..243574,243644..244041,244146..244287, 244332..244943,245021..245125,245167..245304, 245590..>245655)) /gene="Cre-gla-3" /locus_tag="CRE_30114" /product="CRE-GLA-3 protein" /db_xref="WormBase:WBGene00057061" CDS complement(join(242437..242630,242681..243436, 243484..243574,243644..244041,244146..244287, 244332..244943,245021..245125,245167..245304, 245590..245655)) /gene="Cre-gla-3" /locus_tag="CRE_30114" /note="contains similarity to Pfam domain PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar); contains similarity to Interpro domain IPR000571 (Zinc finger, CCCH-type)" /codon_start=1 /product="CRE-GLA-3 protein" /protein_id="EFP12094.1" /db_xref="InterPro:IPR000571" /db_xref="PFAM:PF00642" /db_xref="WormBase:CRE30114" /db_xref="WormBase:WBGene00057061" /translation="MEDQQDYINESASNFKGGPKPKGFSHPQPLLNMSLDKKLDPLPY PIANYETTQTCYPYYQDSMLTNQAYYWPPQWNQSYPYMRAMSASMTSLSCRDHNVALM KTKICDHWRRSGNCSYGDSCWYAHGEDDLRKVVRFQERKGNISQFFQNMYRSNRNIED KLTGENERPYGSTTYRGVSNSMKDDPSTISKNSEAPPPSKRVSTNVKGLTVNIPPNIA FKEQTANASMPLSPAQERWISMSIGTQPSSTVAEKGNEPTITSSASAATIRNGLDNES EKKASMESVVDRRPGTARFFRDDDADDYGFLSPNPFTYPQSSVFSGGNPSQIASMSSH ARSSFSRGPHQRNAMGQQFGGMSFPQSTVPTAPTGRPATLNNGFSDRQPFQLTKSIPT TRSAIVDMPKMTGGVPAQQQQPFHPAIWNVAGELYQRQKDIETCGIRGGGTVEQQNRD AEMARLLSKLNVKDLTYLRYILDNGIPNERDLARQTWNELINNGSQPNQQQPMPTQFM PNNNGLSSTDKNGSDCHCGHNTRRKLSHDSSAMLSSQFPQSHHHQSAVPQHFAQAQHH HHQQLQQHQQQFLQQAQQQQQMLRQHHHNVHYGNARFSAENELAAPPKIFESLLPSDE NFSIWLDPKPRKDSNGGIPEADHSNSGDSLLAKMDVLRSQKCPITDEEMMMNRGADSK EVSEGKRSNSESSSPAVLSLMELLSSENLLDESTVPQKTTMFDFDTLKIAETLRSDPT LSGQSSEASSTQKSESPMFFLVDEKTPNYCDTGFQQSGLFTPATPLSTTTVQTPSFME QCDFFAAAGSCPFGDGCHLSHSIPKDQQQQHLEAV" gene <245787..>247053 /gene="Cre-dhs-3" /locus_tag="CRE_30087" /db_xref="WormBase:WBGene00057060" mRNA join(<245787..245798,246128..246319,246370..246465, 246685..>247053) /gene="Cre-dhs-3" /locus_tag="CRE_30087" /product="CRE-DHS-3 protein" /db_xref="WormBase:WBGene00057060" CDS join(245787..245798,246128..246319,246370..246465, 246685..247053) /gene="Cre-dhs-3" /locus_tag="CRE_30087" /note="contains similarity to Pfam domain PF00106 short chain dehydrogenase; contains similarity to Interpro domains IPR002347 (Glucose/ribitol dehydrogenase), IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR016040 (NAD(P)-binding)" /codon_start=1 /product="CRE-DHS-3 protein" /protein_id="EFP12027.1" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR016040" /db_xref="PFAM:PF00106" /db_xref="WormBase:CRE30087" /db_xref="WormBase:WBGene00057060" /translation="MHFEAKAYTVDLSDYKEINRTADLVKKDIGKVDILINNAGIVTG KKLLQCPDELMIKTVAVNTNALFFTAKNFLPAMLESNKGHIVTIASMAGKCGVAGLVD YCASKHGAVGFNDSLASELYSLKKDVKTTVVCPIYINTGMFDGAVTKWPTLLPIMEPE YVVDCIMEAVLTDRAFLALPKFSYIFMALAGLLPTEVISLYGDHFGITHSMDHFKGRQ SRKA" gene complement(246523..246596) /locus_tag="CRE_32402" /pseudo /db_xref="WormBase:WBGene00186810" tRNA complement(246523..246596) /locus_tag="CRE_32402" /product="tRNA-OTHER" /pseudo /db_xref="WormBase:CRE32402" /db_xref="WormBase:WBGene00186810" gene complement(<247291..>249470) /locus_tag="CRE_30115" /db_xref="WormBase:WBGene00057059" mRNA complement(join(<247291..247864,247912..248088, 248160..248360,248481..248661,248706..248794, 248845..249033,249084..249163,249249..249308, 249354..>249470)) /locus_tag="CRE_30115" /product="hypothetical protein" /db_xref="WormBase:CRE30115" /db_xref="WormBase:WBGene00057059" CDS complement(join(247291..247864,247912..248088, 248160..248360,248481..248661,248706..248794, 248845..249033,249084..249163,249249..249308, 249354..249470)) /locus_tag="CRE_30115" /note="contains similarity to Pfam domain PF06542 Regulator protein PHA-1" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12024.1" /db_xref="PFAM:PF06542" /db_xref="WormBase:CRE30115" /db_xref="WormBase:WBGene00057059" /translation="MAEGEVEVPETDVSVLKSFSAGLVLAKVMEVLAEQSRQKLFIVG TRSRQGDLKGFLEYRLVSKTFNEAVCATIRKEFKHIQVDIDDHFVRCNEFTIGRHQKP PIRQGPNQFPNVNRRNPQEVWDEEMIAAEDLPSEDSVDVQFLYRFFRWLARTFDPMVE SFKIFDSWSFKPCSLPPSWANRLSVFNSMHPDMQYCNCDQCIQTVRRCRGFFGPVSFQ MATDAWREQSLSYGAISCTDAFLADIALQYTVDSPLGKRFESDRFIREFGGIRCNEIT FAVQTLATYRDEHPKSQPLEVIQLILSLWQVKSVEFEVVKFMENDYYTSRCAWETSGA FTRAYFSTYRFDVFDDDAHGLPYRSAGTLDRHIGHEIVPIFDLRIDPTDGPFRMGSNL SLLSLASQDNDSNSFSWLHQGRIAFNMFRANRIMFVTSGLVEFRGMIGTVRPFLIQKS RTISQANWIKFTIRDMMRCIWGPRTRQGIDHGKTVFWISFMEDVGFCISKVWNEHIQE LLQANFPHLVVKINTPEAFEKCGNRKIATYADAKRPDVLNKVNFYIS" gene complement(<250237..>251293) /locus_tag="CRE_30116" /db_xref="WormBase:WBGene00057058" mRNA complement(join(<250237..250427,250475..250570, 250677..250731,250876..251214,251261..>251293)) /locus_tag="CRE_30116" /product="hypothetical protein" /db_xref="WormBase:CRE30116" /db_xref="WormBase:WBGene00057058" CDS complement(join(250237..250427,250475..250570, 250677..250731,250876..251214,251261..251293)) /locus_tag="CRE_30116" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12062.1" /db_xref="WormBase:CRE30116" /db_xref="WormBase:WBGene00057058" /translation="MQNIPKFVDESIEWNKHLNSNKRDCIDGEYTVINDTVIATKNYK HVRCNTLAPKCGVKTKKLWRKGPGDPMEIKIVSIRCFPAYEWEEEDSSNTTMQFSLKY SKFLELRYTESIVSFRNIDEVIKSVGNMHLVKYILRNAPNETIDRYSHEIIWVENPPV DLFDRNNGDEGGSDAWTQYFSKGKITPIMLLYTLFICISVIIRLIWLVSVAWKSMKQG YEPVKKEKSKMEETVEDLD" gene complement(<251969..>253175) /locus_tag="CRE_30117" /db_xref="WormBase:WBGene00057057" mRNA complement(join(<251969..252309,252776..>253175)) /locus_tag="CRE_30117" /product="hypothetical protein" /db_xref="WormBase:CRE30117" /db_xref="WormBase:WBGene00057057" CDS complement(join(251969..252309,252776..253175)) /locus_tag="CRE_30117" /codon_start=1 /product="hypothetical protein" /protein_id="EFP12091.1" /db_xref="WormBase:CRE30117" /db_xref="WormBase:WBGene00057057" /translation="MKINQFYHFSLLFLFLIRYSSSDTNDCDRYDLECMVSSRKNFEI LTTNFQLGVPPEEETKNFTFCIEGQFVVMNGTSPTTDKYKFVKCSTLAPKCAIKTRKV STVFEKTVEKGEMKIVTIGCFPANELQRREMDTLDRYSHEIIWVENPSEDLFDRNNGD ENGSDGESIHIDSFRSEKIFSAWTQYFSKGKITPIMLLYTLFICISVIIKLIWMVSTA WKSIKQGYEPVKTEKSIEGIEESIDELD" gene <254478..>271605 /gene="Cre-kri-1" /locus_tag="CRE_30088" /db_xref="WormBase:WBGene00057056" mRNA join(<254478..254533,254607..254685,254727..254866, 255476..255853,256195..256360,256934..257197, 257241..257447,257497..257647,257690..257850, 260466..260620,269220..269319,269361..269462, 271315..271449,271495..>271605) /gene="Cre-kri-1" /locus_tag="CRE_30088" /product="CRE-KRI-1 protein" /db_xref="WormBase:WBGene00057056" CDS join(254478..254533,254607..254685,254727..254866, 255476..255853,256195..256360,256934..257197, 257241..257447,257497..257647,257690..257850, 260466..260620,269220..269319,269361..269462, 271315..271449,271495..271605) /gene="Cre-kri-1" /locus_tag="CRE_30088" /note="contains similarity to Pfam domains PF00373 (FERM central domain), PF00023 (Ankyrin repeat) (3)contains similarity to Interpro domains IPR002110 (Ankyrin), IPR000299 (Band 4.1, N-terminal)" /codon_start=1 /product="CRE-KRI-1 protein" /protein_id="EFP12050.1" /db_xref="InterPro:IPR000299" /db_xref="InterPro:IPR002110" /db_xref="PFAM:PF00023" /db_xref="PFAM:PF00373" /db_xref="WormBase:CRE30088" /db_xref="WormBase:WBGene00057056" /translation="MAEVSVAIVRLKISALSDKAIPTSQDFEICIKEEPSTVKSFGAK HDYNIIKRVTVGGHTVGADVFKLPSFSFEPSKVNTLEDMIHDYFKRTGNTIRRAVRIP LHDDLNEPSSSTKPSLGHVPGLSLVCVPVFVKESVEVANSRYENLQKLVNLCRNQPEM FDIHTKNMILILEKWLIDSQTSDSYFLSNFFMKESARARIRSCVHNPAFIDLQEQCIR HMSHSVRSNISSASADLDDRVHVANIAKIAMLRYNKFTISVINPAFNPNFASEDSSCV YFYPGIKQCRTQRAASSTSQDMRSRLYPLHKAAEEGNAEDIRRYLKVGMDSNQRDDDS WTPLHYACFHGHLEVVNELLMSPQMTAINAQNKGGATALQYAVIHGNEYLVELLTSHA SIDVNIRNNEGYRPIDYSVNNPAIKKILEMQIFKTKINVDTVIGAFSIKSRSPEDATA SEVLDILGEETQLNKEQMNCFALFLYSESMSLQLKPEHLIEEKLKIDKWNSMIRKLMN ADIRSETPRLKLKRNAYATAIMEMATRVDNNSFAWSTLLDEATNAYLAGHLIANSKEE VTKLAAIVSRAMQGRDFKPTSKNLTNIFPQYMLDNHDRGRLAERLKLQLKKNETQNDM QLEAEFMSIARGLVTYGASFFDVDVFTKKNTGTGHGLVGVNDHGLHIIIKKTWTVKNF RFDEFTAVARDSKTLEIDAQRIRDTVYILVSTQIKFLSGILQKFQDDFSRRR" CONTIG join(AAGD02012449.1:1..6226,gap(10),AAGD02012450.1:1..78779, gap(10),AAGD02012451.1:1..111778,gap(10),AAGD02012452.1:1..76527) //