LOCUS DS268469 546328 bp DNA linear CON 11-OCT-2010 DEFINITION Caenorhabditis remanei Scfld02_62 genomic scaffold, whole genome shotgun sequence. ACCESSION DS268469 AAGD02000000 VERSION DS268469.1 DBLINK BioProject: PRJNA12588 BioSample: SAMN00627085 KEYWORDS WGS. SOURCE Caenorhabditis remanei ORGANISM Caenorhabditis remanei Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 546328) AUTHORS Wilson,R.K. CONSRTM The Caenorhabditis remanei Sequencing Consortium TITLE PCAP assembly of the Caenorhabditis remanei genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 546328) AUTHORS Wilson,R.K. CONSRTM The Caenorhabditis remanei Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (17-JUL-2007) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT The organism is Caenorhabditis remanei Sudhaus, 1974; strain PB4641. This strain is derived from the wild isolate EM464. It was inbred in Scott Baird's laboratory for 20 generations by transferring one gravid female per generation. The strain EM464 was established with individuals collected from a pillbug (Armadillidium vulgare) in Brooklyn, New York, NY, USA in June 1990 by Scott Baird. EM464 was described as /Caenorhabditis vulgaris/Baird, Fitch & Emmons, 1994, which was later shown to be a junior synonym of C. remanei (Sudhaus & Kiontke 1996). Annotation was added to the scaffolds in October 2010. FEATURES Location/Qualifiers source 1..546328 /organism="Caenorhabditis remanei" /mol_type="genomic DNA" /strain="PB4641" /db_xref="taxon:31234" gene complement(<948..>2114) /locus_tag="CRE_14118" /db_xref="WormBase:WBGene00063888" mRNA complement(join(<948..1013,1514..1804,1914..>2114)) /locus_tag="CRE_14118" /product="hypothetical protein" /db_xref="WormBase:CRE14118" /db_xref="WormBase:WBGene00063888" CDS complement(join(948..1013,1514..1804,1914..2114)) /locus_tag="CRE_14118" /note="contains similarity to Pfam domain PF03351 DOMON domain; contains similarity to Interpro domains IPR005018 (DOMON related), IPR013050 (DOMON); coded for by the following C. remanei cDNAs: DR779711" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07937.1" /db_xref="InterPro:IPR005018" /db_xref="InterPro:IPR013050" /db_xref="PFAM:PF03351" /db_xref="WormBase:CRE14118" /db_xref="WormBase:WBGene00063888" /translation="MKMFLFICFILFCSTIPSAYSTTCEAKNEETSMNWHVENNQLEI HFEHNNLTENRWTSIAFGNGPGMNGLESIIFSRGNDNTITTNTGFTPKKKKVEVDDVS YVTVKNVELNGDKLKVTVTRPLGPAGPRNFSLDQCVNWIIVPGGSVKDGKFKKHHGRI YFIKNVCAAQCTNEKKLRVMSNRIQ" gene <16204..>20628 /locus_tag="CRE_14061" /db_xref="WormBase:WBGene00063889" mRNA join(<16204..16275,17383..17467,18509..18583,18854..19077, 19333..19563,19608..19739,19787..19851,19958..20089, 20139..20254,20334..20482,20527..>20628) /locus_tag="CRE_14061" /product="hypothetical protein" /db_xref="WormBase:CRE14061" /db_xref="WormBase:WBGene00063889" CDS join(16204..16275,17383..17467,18509..18583,18854..19077, 19333..19563,19608..19739,19787..19851,19958..20089, 20139..20254,20334..20482,20527..20628) /locus_tag="CRE_14061" /note="contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07905.1" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR008946" /db_xref="InterPro:IPR013088" /db_xref="PFAM:PF00104" /db_xref="PFAM:PF00105" /db_xref="WormBase:CRE14061" /db_xref="WormBase:WBGene00063889" /translation="MGPLCAVCESPTAFTLHFGGRCCKACAAFFRRTIALDLKYECAA DVPCEIHFKFPGMRLVCRECRLRKCYSAGMRAELVRSRRENFACTRRKDSRNNSDAAP NSNSPSMRQSSSPEEDDWSFQMFEEKPVKFDEPSTSTVSHPPLPTTSQMMTEESSRTS SFDGGYCSSLPSSSNVIHPSPPGIGLTTDHNSILQYYHSMETGLCSRRRIMYTNTDMD YILDSHSTLQCPYTVSDLRPHDFRNFRGMLRHDFVILFDYATRFPDFNSFTSHEKNMF YRLILAVDFILSSAYYSAKLGQAHRQMIMTNGEFLCMDPLPMTGNEPDARGYFQSDED FSKYKALMPMHIAIWEESVLPFARMNVSFEEFCLLKALTVWHVTYYKFTETGREKCRH QRNIIIDCLSKMCHSHGANGENRVGELLMSMNYIMESTQKLTTSYVMLTFFDVLNCDA MLHEMLNFKY" gap 16864..16873 /estimated_length=10 gene <21011..>24971 /locus_tag="CRE_14062" /db_xref="WormBase:WBGene00084880" mRNA join(<21011..21013,21066..21665,21697..21906,21957..22265, 22314..22412,22613..22942,22987..23352,23395..23676, 23719..24190,24238..24689,24735..>24971) /locus_tag="CRE_14062" /product="hypothetical protein" /db_xref="WormBase:CRE14062" /db_xref="WormBase:WBGene00084880" CDS join(21011..21013,21066..21665,21697..21906,21957..22265, 22314..22412,22613..22942,22987..23352,23395..23676, 23719..24190,24238..24689,24735..24971) /locus_tag="CRE_14062" /note="contains similarity to Pfam domain PF00620 RhoGAP domain; contains similarity to Interpro domain IPR000198 (RhoGAP)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07861.1" /db_xref="InterPro:IPR000198" /db_xref="PFAM:PF00620" /db_xref="WormBase:CRE14062" /db_xref="WormBase:WBGene00084880" /translation="MVSEPEDYADFRILATRCPSGSKKNSMAFDATNGMARYRFSLGE VLSWNIDLDVIVGNGWTRITLREIPRFLVDALDRVMAKGLDVDGIFRKEGSSVRLNKP EILEIYRGMRPIPDDFTVWDVCTMVKRFLKDLKPTLLNSDNVRMNILRKAKMARETGE FELSHLEMVEIFESTGRHLSPSHPRNTRLCDEIAESGSFDSIAKHSDTHKMTTDNLAV VLVGSVFGDFMTSGGTESRKKMQQVKKCTEADLMAKKEDMGVQVAAVKLLIVNANLIG LPHGHYVSSNRLHLNNHHLNVRSTSAMPTVRCTSVSDNEQTPTSSNTPKVFNMAKASM MHQIHPNSDSQKTSRNQLTRRDSDLTHMKAMKPREPVGTKRSSSFLPIPSLRGLRDRV SNQFLKRNKSPSPDKLRRQLFKPQTSADTPHMNPSSSANLPPPPLPPDHSTPIARRHA SGVDSDVDDNRRAGDANRSIQKQGSTSSGRKSRTHTKKGNINSAMKGNQFDSDSQKSF QMSPNPMEKRTSISSTSSTITNRSLRRISQSDQNSFTRGDATPPKKKKSGSGTALTRR NTADGLRKDHNHHNRDRRPTRRPTYWGVDTITEEKENRRSVITIDDLQSEEEDPKEKS MMEGTFENEESVLELMNSQARLRRVGVAERRQRRIANANSGPSDSMMVLNGSMAAFEK LPPTPQSMKVTIGKKGFPGPIIGKSPSKSQQEYPTVFETPIRGKEELRVKSMTSAKSK IGQQLEREMKQRLDVVATPMLSRRTASESVAHRVQITQQEPLTAIPLRKLDSIGVRLM ISSITQTLFFEVHQHGHAWVGKSQTVVSSPIQRNQVEKTKEAEKVSPILARSPLFRSP STATPTNSEGRASPFFGFRSKSHLTEDRIFSNQEYAALATPPRERRIQSRPARLPQSN LIYSSPKMKPTDHLTSTSPLLTRSSSMMTSCSPCIMTGNRHQAHLALSPLVQSNNTDD SQTFKCPFLPPMKSHESKERKKNTSTSSSINRHSSTPRTPRISAQTADSSTELGFGDF NEIIKNSTEDTKFPLLHQPVEARPSVTALRSSACGLVQSRINHFQTIERTSISNRRVS TDMSTSGGRPSGVSTTSLKSIDTTTSSSGKL" gene <25604..>27216 /gene="Cre-mppb-1" /locus_tag="CRE_14063" /db_xref="WormBase:WBGene00063890" mRNA join(<25604..25636,25683..25805,25856..25942,25989..26609, 26655..26871,26918..>27216) /gene="Cre-mppb-1" /locus_tag="CRE_14063" /product="CRE-MPPB-1 protein" /db_xref="WormBase:WBGene00063890" CDS join(25604..25636,25683..25805,25856..25942,25989..26609, 26655..26871,26918..27216) /gene="Cre-mppb-1" /locus_tag="CRE_14063" /note="contains similarity to Pfam domains PF00675 (Insulinase (Peptidase family M16)), PF05193 (Peptidase M16 inactive domain); contains similarity to Interpro domains IPR001431 (Peptidase M16, zinc-binding site), IPR011765 (Peptidase M16, N-terminal), IPR011237 (Peptidase M16, core), IPR007863 (Peptidase M16, C-terminal); coded for by the following C. remanei cDNAs: DR408994" /codon_start=1 /product="CRE-MPPB-1 protein" /protein_id="EFP07908.1" /db_xref="InterPro:IPR001431" /db_xref="InterPro:IPR007863" /db_xref="InterPro:IPR011237" /db_xref="InterPro:IPR011765" /db_xref="PFAM:PF00675" /db_xref="PFAM:PF05193" /db_xref="WormBase:CRE14063" /db_xref="WormBase:WBGene00063890" /translation="MYRRLASGLYRTSQRKIAQAQAKSVFVPETIVTTLPSGFRVATE NTGGSTATIGVFIDAGSRYENAKNNGTAHFLEHMSFKGTPRRTRMGLELEVENIGAHL NAYTSRESTTYYAKCFTEKLDQSVDILSDILLNSNYTKKDVDAERSVIIREMDEVAQN FQEVVFDNLHMFVFEGNPLSYTILGPTELVQTIDRNDLRSYVDSYYRSGRMVLAAAGG VNHDEVVKMAEKYFGGLKHGDSSADFIPAIYKPCDVRGDIRGLPQLCGAIVVEGVSWT HEDNLALMVANTLMGEYDRMRGFGVNTPTKLAQKLSTDEGIESFQSFNTCYKETGLVG TYFVAAPKSVDNLINSVLEQWVWLASAIDEAAVQRAKRSLLTNIILMLDGSTPVCEDI GRQLLCYGRRIPTPELTARIESITIEQLREVCQRVFLEGKISSAVVGETKYWPSREEI HGRLIRMTR" gene complement(<27415..>29322) /locus_tag="CRE_14119" /db_xref="WormBase:WBGene00063891" mRNA complement(join(<27415..27553,27603..28564,28610..28740, 28787..28972,29021..29239,29295..>29322)) /locus_tag="CRE_14119" /product="hypothetical protein" /db_xref="WormBase:CRE14119" /db_xref="WormBase:WBGene00063891" CDS complement(join(27415..27553,27603..28564,28610..28740, 28787..28972,29021..29239,29295..29322)) /locus_tag="CRE_14119" /note="contains similarity to Pfam domain PF01532 Glycosyl hydrolase family 47; contains similarity to Interpro domain IPR001382 (Glycoside hydrolase, family 47)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07959.1" /db_xref="InterPro:IPR001382" /db_xref="PFAM:PF01532" /db_xref="WormBase:CRE14119" /db_xref="WormBase:WBGene00063891" /translation="MVYIKLNRTTLFLIGIVYMQLLAFLYFYLNFIELSESLNPKRQK FFGKSSEQVQIRQNITENCSGCLPVSNTKLKRAPPIFQGPTNDRQRAIVKAFQHAWSG YKKYAWGHDELRPVSQRFDDPFELGLTIVDSLDTAIIMGLETETREGLEWIRNSLNVS PSRSVNLFETTIRVLGGLLSGFHLTGEDILLKKATKLGDNLLKAFEKSKSPIPKSDVN LQTGDAFSPNRDFSSLAEVTTLQLEFRDLSDLTGDKKYEEVTFNASKHIHKAKCLEYD GLCPYHIDSKGEFRKTCEFSKKILLNFKHYISAITLGARADSYYEYLIKQWLQTKKSI DWLRDDFIQSMKAVKKHLYRQSQPNGLWFIGEITDYKDFYPKMDHLVCFLSGSLVLSH LNSLDENNEHLEMAKQIGDICHKMYDNPTGLGPEIMHFNMENSSDISKEDTYVKSLDA HSLLRPEAIEAWFYLYRATKDKKYQEWGWSAFEAIEKYAKVETGGYSSIDNVLRKKIR RRDKMESFFPAETLKYLYLLLSDDQEVLPLDRWVFNTEAHPLPIYN" gene <36705..>42234 /gene="Cre-twk-8" /locus_tag="CRE_14064" /db_xref="WormBase:WBGene00076021" mRNA join(<36705..36779,37443..37541,37821..37910,37956..38071, 38414..39133,39891..40036,40210..40451,40604..40713, 40776..40854,41094..41204,41270..41434,41944..>42234) /gene="Cre-twk-8" /locus_tag="CRE_14064" /product="CRE-TWK-8 protein" /db_xref="WormBase:WBGene00076021" CDS join(36705..36779,37443..37541,37821..37910,37956..38071, 38414..39133,39891..40036,40210..40451,40604..40713, 40776..40854,41094..41204,41270..41434,41944..42234) /gene="Cre-twk-8" /locus_tag="CRE_14064" /note="contains similarity to Pfam domain PF07885 Ion channel; contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR013099 (Ion transport 2)" /codon_start=1 /product="CRE-TWK-8 protein" /protein_id="EFP07930.1" /db_xref="InterPro:IPR003280" /db_xref="InterPro:IPR013099" /db_xref="PFAM:PF07885" /db_xref="WormBase:CRE14064" /db_xref="WormBase:WBGene00076021" /translation="MPVLLRAVGFGRSSNNNRNLRPNSGASGDRLRRPSQISAGAQSS ATRHSNPDRDKVVQSRIHETEGEEKEKETWGQRFHRAYKEYHIKYLFPLIFIMFYMLI GALIFYFLESGAAEEVASEEDYKYKRERRLLLLRMEELIQEPASKRRVYRKKALEEAI DNYEQKLDFSVKNESQWTFMSAMYFAGTLFTTIGYGDIACTTSAGRIATVIYSCVGIP FMLITLNDLGKFLYNNINGCVKGFEDFTTYLGAFRLCRRGNGNFPKGDDLVNVEAGTA NPDIHIEVSSVASELGSERNESDYEDIEDEEERAMPRMSVKVALGITVGWIFFCSGLF KLWEDWTYGESCYFMFISLSTIGLGDVSVQRRDMMVLCFVFVIVGLSLVSMTINVIQV ALEDFYVNLIMKLILDYQEKMAAGGDQMGASVGMMRMWGNNKTAKFLMPLLSKEKKKM AMEKVEVKAKNNGFEIPAILTDLDEKSGMPKLFHIEEQAEGEEPPKILEELVQKQIDI EEAAAENAVLFVAHDANTQTDILLQEEKGHQTDEKQYGEGGTQTEVLQADNLECETQT EMVLNSIAETQTVILDYKDSDTMTQPVIVNESDSQTEYVQTKEEELQTYIDTNDMETL TEIETKNVRIQTPQPVIEQKCVQTEDLQEDRKSPSKMSSAKKRLRRAFAGKSKPSRSS LEHPVMSDWKDVEESETAVDEEEEEIGSVESLHWDPVDGMHAEKQLPVKKLKAMFDSP KGQRKLE" gene <43008..>45101 /locus_tag="CRE_14065" /db_xref="WormBase:WBGene00084894" mRNA <43008..>45101 /locus_tag="CRE_14065" /product="hypothetical protein" /db_xref="WormBase:CRE14065" /db_xref="WormBase:WBGene00084894" CDS 43008..45101 /locus_tag="CRE_14065" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07911.1" /db_xref="WormBase:CRE14065" /db_xref="WormBase:WBGene00084894" /translation="MSFSTERTKKRSSSVTSSEKSWAVQMNEVRLKERRKLVKGFTDF LESSGRMESDMYEALKAACKGNERQSEVLVEPVKKYCHELRERFEELGGERWPLEIIG VMRENGVETVEELRELCEKGVEMVPGGIVENAKKAQDELALLQDAWNEERETLFRELN KLKEEKRLAEEAVSKYKKTLKEEREASSELRGLLRKLENGPKKAGQARDTKEVPVPSR LEVVRKWSPRDSDDEFSMHGRRGDRKTVGERRDSGAKMKCFTCGGIGHGSWQCVSKRV DKVQIQEGTVKNAGVETVEMVEMLGQRRRVVIDSGAVVSVMSTSAYERLKAGCRDWEK EVEVFGKPTFTVLNASNSKMRVRGQIKIPMVVRGRKVRVVFQLVENWVEKILIGTNAF ESIGVELKWKDPYGLVNAEENSAEVQFIGGEKKLERPGEKLRKVPTEVSEIQCKSVAV RGERGRSASTGDVGEVFKSEGEKERKKVKIRASVAVIGPRLEARGPGVLEYRNKTMTG WTQKFDWGEVKEAVVLVEYTDKEDENSKRVEFVKSVAKEVEKVWMMPRRLQCEFGDVD NVARRWKEWLKTSANVEVVDPLMPVGNHKTPLILEKWHRKSLDGLQKYLHNALPSHSV RCQWEKNEDRRPQSGLKKDLGKGCPIAERRGKWLRRSSTFSKPIGREETKGEKARGSW TTQATSKADVKVNFP" gene <45222..>45527 /locus_tag="CRE_14066" /db_xref="WormBase:WBGene00084879" mRNA join(<45222..45392,45441..>45527) /locus_tag="CRE_14066" /product="hypothetical protein" /db_xref="WormBase:CRE14066" /db_xref="WormBase:WBGene00084879" CDS join(45222..45392,45441..45527) /locus_tag="CRE_14066" /note="contains similarity to Pfam domain PF02118 Srg family chemoreceptor; contains similarity to Interpro domain IPR000609 (7TM GPCR, serpentine receptor class g (Srg), Nematode)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07859.1" /db_xref="InterPro:IPR000609" /db_xref="PFAM:PF02118" /db_xref="WormBase:CRE14066" /db_xref="WormBase:WBGene00084879" /translation="MITCITCLVQLCGTVLSVTRLKFVGSEVAVMLATFIPFISDGLS LVQPWLLLAFSHVARGKIMGTIFRKKLKKSVVAIPKSTTYV" gene complement(<49076..>50304) /locus_tag="CRE_14120" /db_xref="WormBase:WBGene00073162" mRNA complement(join(<49076..49097,49147..49226,49274..49512, 49926..>50304)) /locus_tag="CRE_14120" /product="hypothetical protein" /db_xref="WormBase:CRE14120" /db_xref="WormBase:WBGene00073162" CDS complement(join(49076..49097,49147..49226,49274..49512, 49926..50304)) /locus_tag="CRE_14120" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07878.1" /db_xref="WormBase:CRE14120" /db_xref="WormBase:WBGene00073162" /translation="MSVFNKHSSFFQVEDTLTGGLRTRVNQTSPDQCLLFHAFWSKFC THRRYTNPVRKVEDPLMGGLRTRVNQTSPDQCLLFHAFWSKFCTHRRYANPVRKVEDP LTGCLRTRVNQTSPDQCLLFHAFWSGKEFRSTNEAIMEVHATRLMANWRIHACLGASP LGRTSKTQEFDGQLGALELACAKANFPLNSEKPRNYSSKMPSWYGQTAPNTSYTADDQ IQLSIKLLTVTNNYRVEMENR" gap 53981..55979 /estimated_length=1999 gene <58371..>62957 /locus_tag="CRE_14067" /db_xref="WormBase:WBGene00063894" mRNA join(<58371..58473,60579..60808,62772..>62957) /locus_tag="CRE_14067" /product="hypothetical protein" /db_xref="WormBase:CRE14067" /db_xref="WormBase:WBGene00063894" CDS join(58371..58473,60579..60808,62772..62957) /locus_tag="CRE_14067" /note="contains similarity to Interpro domain IPR016859 (Uncharacterised conserved protein UCP207779)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07953.1" /db_xref="InterPro:IPR016859" /db_xref="WormBase:CRE14067" /db_xref="WormBase:WBGene00063894" /translation="MEMAIQSVVMFVKVSAVLVLLAVSAHAGFFDDIQGVSSDVGNFF SNQFQNAKDLFSNNQSELDKNVERVKELLTGLKEKVKSLEPLANDAQKETLKKVDEYL AKVTEFQSEVKEEGAAKFEENKGKWQQMVTDIFDKGGLNNVVKLLGLQNSAPSSFISA ALAPIFYMIFVR" gene complement(<63338..>65112) /gene="Cre-lpl-1" /locus_tag="CRE_14121" /db_xref="WormBase:WBGene00063895" mRNA complement(join(<63338..63535,64018..64133,64186..64490, 64784..65002,65057..>65112)) /gene="Cre-lpl-1" /locus_tag="CRE_14121" /product="CRE-LPL-1 protein" /db_xref="WormBase:WBGene00063895" CDS complement(join(63338..63535,64018..64133,64186..64490, 64784..65002,65057..65112)) /gene="Cre-lpl-1" /locus_tag="CRE_14121" /note="contains similarity to Pfam domain PF03099 Biotin/lipoate A/B protein ligase family; contains similarity to Interpro domains IPR004143 (Biotin/lipoate A/B protein ligase), IPR000544 (Lipoate-protein ligase B)" /codon_start=1 /product="CRE-LPL-1 protein" /protein_id="EFP07898.1" /db_xref="InterPro:IPR000544" /db_xref="InterPro:IPR004143" /db_xref="PFAM:PF03099" /db_xref="WormBase:CRE14121" /db_xref="WormBase:WBGene00063895" /translation="MLRNLFSVCRRFASSDSPRKVVVCANGTIAAWHPPQEFPYEHTK PIDLSALTKKDQSSRLSAAAKASAVPREPINAELKEIFYTSKHEWYTRNFILALEHKP VYTVGIRSKGYTKEEEERLKGLGAEFHRTSRGGLITFHGPGQLVLYPICDVRRVSTRQ LGVRNFVVKLEQTIIDSASQGFGIQNVGRTENTGVWVSGERKLAAIGIAVSGGVSYHG IAINCNTDLTWFDNIVGCGIEGVSTTSLSRETNRTVTVAEARPVLLNHFAKNFECLLD SSSSNNYCFSHSKLSSAVSNS" gene complement(<65381..>66336) /gene="Cre-icl-1" /locus_tag="CRE_14122" /db_xref="WormBase:WBGene00063896" mRNA complement(join(<65381..65488,65540..65703,65750..65851, 65905..65964,66027..66166,66218..>66336)) /gene="Cre-icl-1" /locus_tag="CRE_14122" /product="CRE-ICL-1 protein" /db_xref="WormBase:WBGene00063896" CDS complement(join(65381..65488,65540..65703,65750..65851, 65905..65964,66027..66166,66218..66336)) /gene="Cre-icl-1" /locus_tag="CRE_14122" /note="contains similarity to Pfam domain PF03517 Nucleotide-sensitive chloride conductance regulator (ICln); contains similarity to Interpro domain IPR003521 (Nucleotide-sensitive chloride conductance regulator)" /codon_start=1 /product="CRE-ICL-1 protein" /protein_id="EFP07962.1" /db_xref="InterPro:IPR003521" /db_xref="PFAM:PF03517" /db_xref="WormBase:CRE14122" /db_xref="WormBase:WBGene00063896" /translation="MVILKEVSQPTEGIKLAAENVQAFYKTDSLGNGTLYITDSAVTW ISRADSKGFSVAYPAIVLHAISTDVTVFPSEHVFVMVDQRKSVKRRRRAPILRTIQEA DEQRGLELAAAELEDEESDDDEEGPGLEIRFVPDNKDCLPDIYHQILKGQEENPEEDD PMYDDDGEDEEEEEYGEMDQSEDGMPPGQWITADNIDQFQGGDGMQMTEEGLATMKRI FGNREHHDDSME" gene complement(<66598..>66925) /locus_tag="CRE_14123" /db_xref="WormBase:WBGene00063898" mRNA complement(join(<66598..66647,66698..66773,66824..>66925)) /locus_tag="CRE_14123" /product="hypothetical protein" /db_xref="WormBase:CRE14123" /db_xref="WormBase:WBGene00063898" CDS complement(join(66598..66647,66698..66773,66824..66925)) /locus_tag="CRE_14123" /note="contains similarity to Pfam domain PF08927 Domain of unknown function (DUF1909); contains similarity to Interpro domain IPR015023 (Protein of unknown function DUF1909)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07916.1" /db_xref="InterPro:IPR015023" /db_xref="PFAM:PF08927" /db_xref="WormBase:CRE14123" /db_xref="WormBase:WBGene00063898" /translation="MARGQQKIQSQQKNQKKADAARKAGIDQKAAAAKALNHKCSVCL AMMPDQRHTSSISRINIQKSPLPAELVDVAA" gene <67591..>69379 /locus_tag="CRE_14068" /db_xref="WormBase:WBGene00063899" mRNA join(<67591..67652,67701..67886,67936..68523,68570..68986, 69031..>69379) /locus_tag="CRE_14068" /product="hypothetical protein" /db_xref="WormBase:CRE14068" /db_xref="WormBase:WBGene00063899" CDS join(67591..67652,67701..67886,67936..68523,68570..68986, 69031..69379) /locus_tag="CRE_14068" /note="contains similarity to Pfam domain PF07002 Copine; contains similarity to Interpro domains IPR010734 (Copine), IPR002035 (von Willebrand factor, type A)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07919.1" /db_xref="InterPro:IPR002035" /db_xref="InterPro:IPR010734" /db_xref="PFAM:PF07002" /db_xref="WormBase:CRE14068" /db_xref="WormBase:WBGene00063899" /translation="MLLVAPEKMAAYGVEITLAIRNARFYPSADGVRIRVFSLDKESE IVEQVAETETIYGQADSFFQEKLNLNFRFEKLQRFRAIIYVLNSSTNTVMGSMGSGDF DLSMMFACGGRLTLPITSSLSTITLEISGKVPEYYSQFLRLRFSGSYIHSPDGLPLQL YYILSIPAEDRTIMLHKSEMLKETKNPEWASFSVPLFLLNYFNESSIQVFVYNYTPNH DDQLVGHCTTTLTQLQQGVGHFNSYMLMEANGKRIHEKTCVELKEMMLENGPTFFKML EDNVKLQLNTAIDLTASNGNPVNAGSLHYIHPHHPSAYLESLLHTTPPLLGYLPNPQN PYIGALGFGAKVQGPGGALQLSHCFCLVSLILILRFASHFQNGAPTDPRVEGLAGLIS AYRTATMGVQPFAPTDFSEVIYFVSKFAKAESRRHVGLYFILLIYSDGGPANALNMKR TIDAIVDASAHPMSIVAVGVGQDRDHSPMRNLEKLTLKHSDGRLLVRQNYTFVEASEL ESSDALAMIPVQMTQWKRMFHFNPQ" gene <69648..>71354 /locus_tag="CRE_14069" /db_xref="WormBase:WBGene00063900" mRNA join(<69648..69763,69807..69896,70068..70514,70559..71046, 71101..>71354) /locus_tag="CRE_14069" /product="hypothetical protein" /db_xref="WormBase:CRE14069" /db_xref="WormBase:WBGene00063900" CDS join(69648..69763,69807..69896,70068..70514,70559..71046, 71101..71354) /locus_tag="CRE_14069" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07942.1" /db_xref="WormBase:CRE14069" /db_xref="WormBase:WBGene00063900" /translation="MFEKQEETEGGHGFGMVEVKRFFQWILGCTYAKKTFRTRMAEMF HFADAPHIVVYERSEERPWYWMVGIITAVLIAVLSLYYTLEAGVRAVRKFMYSVLREP PQSTVSTPRCLSPTTPSSKKTSPQIPITSEAPRQKVPMNEPVNCVFIRPAIPKLSAEG TVPIPNMNSEEDTMVDADRVMTSKNEKDKEKRDKTKSPPSMKLEEVKFDASSNVNIIP TMVPSPSVSSKKSNRKSTGSEEKEAAPETSVSEGGHMDEWLTKQVAGCEKLIAERANA GEEIDFEETGAQMVSNGFIEKIQQLIEAQLEQSSCLEDSSNSVLSIESIISSLIEIEP SFEETQSNSPLSEVTDEKPTFKQSTVRAMATVSSVCENDDVDIVIDDNSLYTDKENEC DGSILVQEGQQKVLFRWTDECPNTIDTVTLTGSFFGWNMNIPMKRTGVTTFEVSIDLP AGLHDYLINIFRFD" gene <72510..>74397 /locus_tag="CRE_14070" /db_xref="WormBase:WBGene00063901" mRNA join(<72510..72718,73028..73173,73269..73461,73508..73586, 73648..73998,74044..>74397) /locus_tag="CRE_14070" /product="hypothetical protein" /db_xref="WormBase:CRE14070" /db_xref="WormBase:WBGene00063901" CDS join(72510..72718,73028..73173,73269..73461,73508..73586, 73648..73998,74044..74397) /locus_tag="CRE_14070" /note="contains similarity to Caenorhabditis remanei Sex determination protein FEM-3.; TR:Q563Y6" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07939.1" /db_xref="WormBase:CRE14070" /db_xref="WormBase:WBGene00063901" /translation="MGAMKMTCDDFRAEDEQPIEVDERRRRLKRKANDDDDDETVRER IDDAESSMEVFEAEYPPILDPLQDQREAKYFRERMQRFDLYSRTTGLSVDDIDWPLIR GRSLQKGRVAGISFVYDDTRYPINRFSDTWLLCVTKQKLFSFGAGCVEDLNITSFVLR RTMKVLSTYCNWLFEAAKRNNRRHITHKEIQELINRDGFRFHQYLQKFLIGRGMEYTE YNNRFFKYLHEEYNKNPGGLETIYSNQDFIAKETAQANYIYDTVRAKYGGFEELPLFR HALKISFTQPGEHYFSRFYAKRFHEALGCPPLDSEIIMILDWFGVLIMNQIVYKTIRW HEEEYNDGSFPVLDSYHKALADESKCPKACLISISLFPDDPLFDLDIDYGTNPPPVNT AYQKVRRTPRDPTPFYRLMEFEEYKSCLVKMHFNFSELTGEWLRKICARGR" gene <76347..>77104 /locus_tag="CRE_14071" /db_xref="WormBase:WBGene00063902" mRNA join(<76347..76563,76614..>77104) /locus_tag="CRE_14071" /product="hypothetical protein" /db_xref="WormBase:CRE14071" /db_xref="WormBase:WBGene00063902" CDS join(76347..76563,76614..77104) /locus_tag="CRE_14071" /note="contains similarity to Interpro domain IPR012677 (Nucleotide-binding, alpha-beta plait)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07866.1" /db_xref="InterPro:IPR012677" /db_xref="WormBase:CRE14071" /db_xref="WormBase:WBGene00063902" /translation="MARAIAVDAPLSAGIRRGKSFKKSSVKKSTMGIKKRFSGAGKPS GGPRRMSGGAPRRQSGGFQKLDRIIPSNDNREVRINISNLAPTVLAGDLQQLFAEFRI KNVSVNFNEKGNPVGTGDITLSKRHADRLVQKFAGVALDGKEMKFAIIDTSNIANRVK FPEAPQRVPAGSGRQQSRRPQSGKPNQQRTPKKQNVKAAGGQKAAKGKKPKKVAQPKK TVEEMDAELDAYMGHAI" gene <78913..>79546 /locus_tag="CRE_14072" /db_xref="WormBase:WBGene00084884" mRNA join(<78913..79045,79134..>79546) /locus_tag="CRE_14072" /product="hypothetical protein" /db_xref="WormBase:CRE14072" /db_xref="WormBase:WBGene00084884" CDS join(78913..79045,79134..79546) /locus_tag="CRE_14072" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07874.1" /db_xref="WormBase:CRE14072" /db_xref="WormBase:WBGene00084884" /translation="MAPSPDFRAQLTERTRRLSQDWKQKRTAQKGRRLGSDSPGNTTL RSQDVRILLSNICPSVTTNSLQQMFSEFNLKTVLVNSDEHKKDVGNGTVTLPKDKAMR LIQQFTGKLIGSTEMKFRLIAISNIEKRVRFSEGPEEIESVSPSTKLKVNEKTKEFLN KMGNNNFNHNALLSTFSNLSI" gene complement(<81837..>91116) /locus_tag="CRE_14124" /db_xref="WormBase:WBGene00063903" mRNA complement(join(<81837..81980,82030..82104,82160..82279, 82327..82800,83014..83179,91094..>91116)) /locus_tag="CRE_14124" /product="hypothetical protein" /db_xref="WormBase:CRE14124" /db_xref="WormBase:WBGene00063903" CDS complement(join(81837..81980,82030..82104,82160..82279, 82327..82800,83014..83179,91094..91116)) /locus_tag="CRE_14124" /note="contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase; contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07873.1" /db_xref="InterPro:IPR000242" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR016130" /db_xref="PFAM:PF00102" /db_xref="WormBase:CRE14124" /db_xref="WormBase:WBGene00063903" /translation="MCKYCKVPAKNSFRDQKSKLPAANESCESSKETSRLESKKQADP KAPQTPGGQPKVNQKAMIVKNIFRYQDVPCQDKGRIVIKFPGLQSDYIHANYLGTANN PKKFICAQGPLENTQYSFWAMAIQEKVECIIMLCNCIEMAKIKCHQYWPLEKDQKISF GEAPNQIFVTKLDEKKMSPEEQCINVTTLKVDCNEGSRTIQHLQWENWPDRGVPQTNL TAINLLSATRGNQNPILVHCSAGIGRTGTIVAIAYVQDKMMVGEDCMAMNELLKELRS HRPWSIQNEFQYLYLHRVLLAYFLERHKEAYGELLVGDNATKYQKWIEDYAKATNSK" gap 95334..95430 /estimated_length=97 gene <98517..>99534 /locus_tag="CRE_14073" /db_xref="WormBase:WBGene00073529" mRNA join(<98517..98585,99118..99197,99315..>99534) /locus_tag="CRE_14073" /product="hypothetical protein" /db_xref="WormBase:CRE14073" /db_xref="WormBase:WBGene00073529" CDS join(98517..98585,99118..99197,99315..99534) /locus_tag="CRE_14073" /note="contains similarity to Pfam domain PF00595 PDZ domain (Also known as DHR or GLGF); contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07857.1" /db_xref="InterPro:IPR001478" /db_xref="PFAM:PF00595" /db_xref="WormBase:CRE14073" /db_xref="WormBase:WBGene00073529" /translation="MVKIPSGAVPPRLCVIEKLNGETEYGYNLHAEKGRGQFVGIVDA NSPAERGGLITGDRIFAVNGHSIIGENHKKVVERIKANPNRCEMLVISEEGAKLYQEH NIPITLDLPNVERVSQKVGS" gene <101392..>114473 /gene="Cre-tag-60" /locus_tag="CRE_14074" /db_xref="WormBase:WBGene00063904" mRNA join(<101392..102177,111444..111524,111576..111959, 112492..112587,113014..113229,113971..114112, 114165..114246,114425..>114473) /gene="Cre-tag-60" /locus_tag="CRE_14074" /product="CRE-TAG-60 protein" /db_xref="WormBase:WBGene00063904" CDS join(101392..102177,111444..111524,111576..111959, 112492..112587,113014..113229,113971..114112, 114165..114246,114425..114473) /gene="Cre-tag-60" /locus_tag="CRE_14074" /note="contains similarity to Pfam domain PF00595 PDZ domain (Also known as DHR or GLGF); contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)" /codon_start=1 /product="CRE-TAG-60 protein" /protein_id="EFP07882.1" /db_xref="InterPro:IPR001478" /db_xref="PFAM:PF00595" /db_xref="WormBase:CRE14074" /db_xref="WormBase:WBGene00063904" /translation="MDSNRNPSGGDSPQPITWISYLYTSFLYYFWLIYARLPQRITDD KSTEEQIRRDADTPRAQISRTSDETQTVRQVAGLVASLPAPKDSSLLSLTPPSSFDCN NCLTPHSSQKTCSPTYVSNLSLRLRSSSSSSKKKPSSTSSSTVSFHTPSRSSSTSSVS SESTISPKKVIAVVPSGSHVLVRVPKLDWKTESIRIKRTRMSDWLDAEQRDVMRQFDE VIRIEEEAEDQKTSSRGKKGILKQHYGSTRSIESIPSSSSRRSKSKETPVFVPPPPPP TDAMPYLPRLAELKKSTPDQEFGFNLHAERNRGHFIGTVDNGGIGQAAGLVIGQRIVG VNGELIYPNTGHKEVVSLIKKDNMKTTLLVASEEVDKYHRDHSIPYSWDNVERFAPEI NVETYHEEVLVAKTNGYDIQPLNPHSIQVNEEREISKMTTTTKTETISSNTASYQYKE STTAYDAYAAPPAESGDLMDQVFGNVSLPTVGNSVTIHSHTEELPSAEDASSVSSLSS HRESAVDVPVSHQYVPSYATQSHQQHEQHSQTHHHHHHSQQQPSPLSNGSSHGYAASS TSGYDDDDIYHLSASEARERLRMKNRKNHLHEMSLHEKYQMVSNM" gap 102748..103151 /estimated_length=404 gap 104933..105528 /estimated_length=596 gene complement(<115057..>115920) /locus_tag="CRE_14125" /db_xref="WormBase:WBGene00063905" mRNA complement(join(<115057..115308,115435..115655, 115704..>115920)) /locus_tag="CRE_14125" /product="hypothetical protein" /db_xref="WormBase:CRE14125" /db_xref="WormBase:WBGene00063905" CDS complement(join(115057..115308,115435..115655, 115704..115920)) /locus_tag="CRE_14125" /note="contains similarity to Homo sapiens THO complex subunit 4; ENSEMBL:ENSP00000331817" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07869.1" /db_xref="WormBase:CRE14125" /db_xref="WormBase:WBGene00063905" /translation="MVKATPIDMALSDIISTKRKTKKGVKRPIKKSAGGIKKRGSFSN AGTPRRQSGGGQGGVRKVIRKSVGGGSNDNRPVRINISNLAGTVLSSDLQELFNGFNL RKVSVNFNEDGTPAGTGDLTLSKYNADRLIQKFAGVALDGKVRKVMHFAVIETTNVVA SRKPEIRGTPNRRNSAGRPNNNKKIVQKSPRNQNAARPSKKTQKPKREQKTQKTAAEL DAELDAYMSRS" gene <116745..>117291 /gene="Cre-rpb-12" /locus_tag="CRE_14075" /db_xref="WormBase:WBGene00063906" mRNA join(<116745..116817,117127..117219,117269..>117291) /gene="Cre-rpb-12" /locus_tag="CRE_14075" /product="CRE-RPB-12 protein" /db_xref="WormBase:WBGene00063906" CDS join(116745..116817,117127..117219,117269..117291) /gene="Cre-rpb-12" /locus_tag="CRE_14075" /note="contains similarity to Pfam domain PF03604 DNA directed RNA polymerase, 7 kDa subunit; contains similarity to Interpro domain IPR006591 (RNA polymerase Rbp10)" /codon_start=1 /product="CRE-RPB-12 protein" /protein_id="EFP07909.1" /db_xref="InterPro:IPR006591" /db_xref="PFAM:PF03604" /db_xref="WormBase:CRE14075" /db_xref="WormBase:WBGene00063906" /translation="MDGSATPGPGQGHVKSNSMIYICGECHGENEIKPKDAIRCRECG YRILYKKRCRKLMVYDAR" gene complement(<117862..>119674) /locus_tag="CRE_14126" /db_xref="WormBase:WBGene00063907" mRNA complement(join(<117862..117931,117997..118093, 118232..118351,118397..118483,119476..119575, 119621..>119674)) /locus_tag="CRE_14126" /product="hypothetical protein" /db_xref="WormBase:CRE14126" /db_xref="WormBase:WBGene00063907" CDS complement(join(117862..117931,117997..118093, 118232..118351,118397..118483,119476..119575, 119621..119674)) /locus_tag="CRE_14126" /note="contains similarity to Caenorhabditis vulgaris CV-FLP-1B.; TR:Q23806" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07941.1" /db_xref="WormBase:CRE14126" /db_xref="WormBase:WBGene00063907" /translation="MTLLYQVGLLLLVAATYKVSAECCTPGATSDFCTVFSMLSTMEQ NEVMSYLGENCEGDAEVALQKMEKRKPNFMRYGRSAAVKSLGKKAGSDPNFLRFGRSQ PNFLRFGKASGDPNFLRFGRSDPNFLRFGKAAADPNFLRFGKRSADPNFLRFGRSFDN FDRESRKPNFLRFGK" gene <119975..>127327 /gene="Cre-daf-10" /locus_tag="CRE_14076" /db_xref="WormBase:WBGene00063909" mRNA join(<119975..120182,120848..120968,121025..121244, 121879..122173,122347..122512,122760..122994, 123579..123692,123843..124303,124357..124510, 124557..124715,124907..125073,125272..125443, 125629..125825,125961..126099,126277..126368, 126415..126609,126759..127119,127166..>127327) /gene="Cre-daf-10" /locus_tag="CRE_14076" /product="CRE-DAF-10 protein" /db_xref="WormBase:WBGene00063909" CDS join(119975..120182,120848..120968,121025..121244, 121879..122173,122347..122512,122760..122994, 123579..123692,123843..124303,124357..124510, 124557..124715,124907..125073,125272..125443, 125629..125825,125961..126099,126277..126368, 126415..126609,126759..127119,127166..127327) /gene="Cre-daf-10" /locus_tag="CRE_14076" /note="contains similarity to Pfam domain PF00400 WD domain, G-beta repeat; contains similarity to Interpro domains IPR001680 (WD40 repeat), IPR015943 (WD40/YVTN repeat-like)" /codon_start=1 /product="CRE-DAF-10 protein" /protein_id="EFP07890.1" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="PFAM:PF00400" /db_xref="WormBase:CRE14076" /db_xref="WormBase:WBGene00063909" /translation="MMRLFLGNMEKNEQFLECGDSINSCIVFIFRVCVYDLAFKPDGS ELLLAADNKLFLFDVAEGGQMQILKGHKDLVYTVAWSHDGEMFASGGADKLVILWNEK HEGYLRYSHTDVIQSMVFNPVNLILLTCALNEFGLWSTTNKNVVKQRSNTRCCSCAWN TDGTVYAIGHGDGTVALRKGTIVTEEASMIIQRDSTEPVWGIAFSSNKLFAPKDSQGN PTNIDEIMAVIDWSKTLSFYTMEGELKESRQLDFEPHCIKYCIQGEYLLIGGSDRKLK IYTRTGVLLSTVAQMDHWIWSVAVRPNTNTIAMGCVDGTIACYNLIFSTVHCVDHARY AVRKSMTDVYVQNLEYRTSSNIRCQDLVKKMSLYDTKLAIQLSDKIQIYKQSSGLNKQ ERRKYLKYTLQDTIRKDLEFSLMVVTHGHLVVCNEDKLECYDFKGIKKRSWNMKSVVR YLRVLGGPPHRETLVLGTVDGCVYKVLIDNDYPILLDTRKTPIKCVDINANRTILASI EDTLVCKWSDIATGETLLQEPGCYSVVFNTVNENLFAYTTNMMLHVRTLMAPGHTSRG VGYVLGFVKNRTFCLVQYSLIPLEVAYTVILYQYIDRNDFKEAFRIACLGVVKNDWIY LAEKALNALELDVAMKAYKRVKDRAMLRMIFELKKLKENGETEAIIRATICAYMKKFR EASKIYKENGFENKAMELFTDMRMFEDVQEVMTTASGETKKMLMRKRASWARDANQPK IAAEMLISSGDLDKATVLIIENDWLELAIEISHKIDKGDLETMKKLSSYFIRKHEFGL ASRIFQSINDMKSIVDMHVNAGHWTDAFAIADRHPKYVEDVYLPYARFLAERDRFEEA QKAFHRAGKEQEAMNVLEQLTSNAVDENRFADAGFYYWLLSQQYLDRSQSEENLTLLS KAREAAQFADAYYAYYPVFIFCSQPFSFERNENILNMARYLTFTPYINNISKVFVYFT IAKLAGEMGAYKSARTALDQLTRLRVRPHFELDGQIDTMTLNIRAKPFTDVDSMQPMC YRCGLNNPFLGGTSCIHCETPFIISFVSFDVLPLIEFKIEQDITFDEAKELIESEPPL ADDDYNPLRSIKKGVKEIILNRDSLSRLERGHVIIQTFQPPLAPKFLFNVMPSITIAQ CKGCNKVFDLDDFEMACLRKGHCPFCRTSYDRNEAFFVEEEEEEESSNVPSFGQFSRF S" gene <127621..>128958 /locus_tag="CRE_14077" /db_xref="WormBase:WBGene00063910" mRNA join(<127621..127971,128020..>128958) /locus_tag="CRE_14077" /product="hypothetical protein" /db_xref="WormBase:CRE14077" /db_xref="WormBase:WBGene00063910" CDS join(127621..127971,128020..128958) /locus_tag="CRE_14077" /note="contains similarity to Interpro domain IPR013083 (Zinc finger, RING/FYVE/PHD-type)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07924.1" /db_xref="InterPro:IPR013083" /db_xref="WormBase:CRE14077" /db_xref="WormBase:WBGene00063910" /translation="MSMLSSVFCLKCKNMYGEYAFQMRPRSSFGSLFLLFRQFGHSDL FADLETRKMCIGTCNHSICEKCFDKKLTGTCPICEKGNSFDLKNINYQAQEMVGTVVQ SVSLTDLVDLKLNQKSSGHGECSECKKYNEKLRICVECAMRSELLTKSKDGEFEFSAE IKDGELLETKILLIRSFALCANCVLDGNKHDGSDGKQHKLVPMVNIKGMSETFYKLRA ISVVSFALGNIKKEVSECKHMPLAPKLCAWVSECWKTIEEFEQKIAEGNGVDHASNSS AVITMINTVMEILNGVSWVYKEVVERCLADLSVEMNNAESVDEKRELKKTLEKLESLR NFYGSRKMFDLRTSKIVDLFYMYQSGTLGKTFANDNRIDKSSIEEAVREGLNVTKDVR RMIKLPPRYEKYANFAGSVLQLFMGEKSNQLEEPDLD" gene <129489..>130698 /locus_tag="CRE_14078" /db_xref="WormBase:WBGene00063911" mRNA join(<129489..129537,129587..129795,129841..>130698) /locus_tag="CRE_14078" /product="hypothetical protein" /db_xref="WormBase:CRE14078" /db_xref="WormBase:WBGene00063911" CDS join(129489..129537,129587..129795,129841..130698) /locus_tag="CRE_14078" /note="contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07931.1" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR013083" /db_xref="WormBase:CRE14078" /db_xref="WormBase:WBGene00063911" /translation="MSMLSSVLCLKCEGMYNENRKTCIGSCGHSICEKCFDEKQSGSC SICKAEHAFDEKRFNWHAPDMVKTLLESISLTSVCNMNTDHTTVGHGLCSECKGHSNK LRICADCAIQHNLLEKSDNGGLKLSKEISEEELLEAKILRIRSNALCADCVMDGRKHD GHQMVPLGDVQYMNDATEVLDSHAALIFLFHNIWKECDQHKYMKLDLQLYNFHCECFL IIEKIIEHLENDSSADSELFKPTEYMDQVYGSVWHFRIRVEDSLKEASNYMEIESSTE EKLEWKKTIEQLECIRGFYDFIILKGHFEGSSPIPMDGVLKHGSSLKLGQPSFGSDDS VEGMRLVFKTLPMFGSRFGQSERDKEQQLEKPKLDEI" gene complement(<131231..>131793) /locus_tag="CRE_14127" /db_xref="WormBase:WBGene00084882" mRNA complement(join(<131231..131428,131474..131582, 131633..>131793)) /locus_tag="CRE_14127" /product="hypothetical protein" /db_xref="WormBase:CRE14127" /db_xref="WormBase:WBGene00084882" CDS complement(join(131231..131428,131474..131582, 131633..131793)) /locus_tag="CRE_14127" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07868.1" /db_xref="WormBase:CRE14127" /db_xref="WormBase:WBGene00084882" /translation="MSKSTIFTHFLILNSFCAVLSTNYHFTFHVKLRCRISRGKFGFR AQFFDKDVMWWNGDDPITEEYIDISPPGDITFKSEGMLTGDEWMSEYFAVKMVLYHNC NSMGKEVRVDMDIFPLAFISYNLEDNKYYDYKFTANITELSGDTWQHASLLQN" gap 132408..132600 /estimated_length=193 gene complement(<133273..>133840) /locus_tag="CRE_14128" /db_xref="WormBase:WBGene00084887" mRNA complement(join(<133273..133470,133521..133629, 133680..>133840)) /locus_tag="CRE_14128" /product="hypothetical protein" /db_xref="WormBase:CRE14128" /db_xref="WormBase:WBGene00084887" CDS complement(join(133273..133470,133521..133629, 133680..133840)) /locus_tag="CRE_14128" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07886.1" /db_xref="WormBase:CRE14128" /db_xref="WormBase:WBGene00084887" /translation="MRGSTFFTLLLVLNVFWAVLSTNYVFKFDVTLHCSIPNREFGYN VQFYDKDEMFWNKDDPITEPYKGVSPPGNAFFKTEGTLTGDEWLSKYFDVKMVLFHTC NSLGESTRVGMRIDPLAAISEYSEDECYQFGLVADITEMRGDVWNVAKLVKNC" gene complement(<134071..>134403) /locus_tag="CRE_14129" /db_xref="WormBase:WBGene00084892" mRNA complement(<134071..>134403) /locus_tag="CRE_14129" /product="hypothetical protein" /db_xref="WormBase:CRE14129" /db_xref="WormBase:WBGene00084892" CDS complement(134071..134403) /locus_tag="CRE_14129" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07906.1" /db_xref="WormBase:CRE14129" /db_xref="WormBase:WBGene00084892" /translation="MINYRKEDYDSMNGILSRIDWTLMLANLPINDMYSLFIGHLKEL IYNYVPILDLFAPLSKDSYWKSSRLLSCWNSLPVHVFPVKFFSLWFKNNVKRLNLSKY LTLNISTY" gene complement(<134779..>135301) /locus_tag="CRE_14130" /db_xref="WormBase:WBGene00084885" mRNA complement(join(<134779..135097,135141..>135301)) /locus_tag="CRE_14130" /product="hypothetical protein" /db_xref="WormBase:CRE14130" /db_xref="WormBase:WBGene00084885" CDS complement(join(134779..135097,135141..135301)) /locus_tag="CRE_14130" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07879.1" /db_xref="WormBase:CRE14130" /db_xref="WormBase:WBGene00084885" /translation="MRVSTAFTLLLLLNIFCLVHSTNYYFIFEGKFHCDILNRQFQYN VQFFDEDYMWWNDDDPITEPYKDISPPGDSYFRSKGMLDGDEWMVEAFDIKMVLYHTC TQTGQENRVDMRFRPSARNSYNLDENKYYRYDFATNITELSGEKIQMARLYKSGQNK" gene complement(<135584..>136102) /locus_tag="CRE_14131" /db_xref="WormBase:WBGene00084907" mRNA complement(join(<135584..135890,135942..>136102)) /locus_tag="CRE_14131" /product="hypothetical protein" /db_xref="WormBase:CRE14131" /db_xref="WormBase:WBGene00084907" CDS complement(join(135584..135890,135942..136102)) /locus_tag="CRE_14131" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07951.1" /db_xref="WormBase:CRE14131" /db_xref="WormBase:WBGene00084907" /translation="MRGSTIFTLLLVLNSLCAVLSTNYHFTFHVKLHCGIPYRKVGYN AQFFDKDYMWFNSDDPITEPYKTVAPPGDIAFKAEGMLTGDEWLTDFFEVKMVLFHTC TPSGKAMAVDLVLYPWAYNHYNLEDDKYYRYEFTRNITELSGDLVQPARLDKT" gene complement(<136327..>136851) /locus_tag="CRE_14132" /db_xref="WormBase:WBGene00063912" mRNA complement(join(<136327..136636,136691..>136851)) /locus_tag="CRE_14132" /product="hypothetical protein" /db_xref="WormBase:CRE14132" /db_xref="WormBase:WBGene00063912" CDS complement(join(136327..136636,136691..136851)) /locus_tag="CRE_14132" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07948.1" /db_xref="WormBase:CRE14132" /db_xref="WormBase:WBGene00063912" /translation="MRGSSAFTLLLLLNIFCLVHSTNYYFSFYVTLHCRISNRQFGYN AQFFDKDVAWFNGDDAITDPYINYSLPGDAFFKSEGMLTGDEWLSKFFDLKMVLYHNC NLANEEVRVDMNLLPLLKIPQTLLDNKYYQFELSVDITEMSGEITYTGKLVQNR" gene <137698..>138374 /locus_tag="CRE_14079" /db_xref="WormBase:WBGene00084901" mRNA join(<137698..137889,137937..138110,138189..>138374) /locus_tag="CRE_14079" /product="hypothetical protein" /db_xref="WormBase:CRE14079" /db_xref="WormBase:WBGene00084901" CDS join(137698..137889,137937..138110,138189..138374) /locus_tag="CRE_14079" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07934.1" /db_xref="WormBase:CRE14079" /db_xref="WormBase:WBGene00084901" /translation="MTQFFYIEKKPFLPWEINTINTLVVGVYSPILENSHATITVLFG MIQSGFICNILNILHVQAEWNLYYARIMSMIFSIYAAIRMVWYQTILLPKLPLRINWK SMIIITLFFALTAYFLFPYCTASNVYIHVYLYLLSIETSIWYYTKEFRLFSRYPRTGF TDYARAYHTTVHRYYTSDLHFQQ" gene complement(<139417..>140242) /locus_tag="CRE_14133" /db_xref="WormBase:WBGene00084904" mRNA complement(join(<139417..139539,139587..139908, 140052..>140242)) /locus_tag="CRE_14133" /product="hypothetical protein" /db_xref="WormBase:CRE14133" /db_xref="WormBase:WBGene00084904" CDS complement(join(139417..139539,139587..139908, 140052..140242)) /locus_tag="CRE_14133" /note="contains similarity to Interpro domain IPR001699 (Transcription factor, T-box)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07943.1" /db_xref="InterPro:IPR001699" /db_xref="WormBase:CRE14133" /db_xref="WormBase:WBGene00084904" /translation="MTNATVMCTSLDDWLTMAEGNGDPEIQLGLKSYHGLKFKYRIGN VNPQARYVIRLLFTRESDHPWNRNSQGIGFWRETKTFLLPDGELSFQHIDVKSGEELL REEVYFEKIFFENREKLGNRPQRNPPNYIITLTCRIKYFVSVVITNAENYRDTSTHGI QFQYFIAVNANAPLVKNTRESQKIEDRHDSAPPKRRPTPRKTGFKHPRPTK" gene complement(<140542..>146235) /locus_tag="CRE_14134" /db_xref="WormBase:WBGene00063913" mRNA complement(join(<140542..140913,141355..141466, 141568..142305,142369..143315,143474..143632, 143829..144070,144122..144357,145847..>146235)) /locus_tag="CRE_14134" /product="hypothetical protein" /db_xref="WormBase:CRE14134" /db_xref="WormBase:WBGene00063913" CDS complement(join(140542..140913,141355..141466, 141568..142305,142369..143315,143474..143632, 143829..144070,144122..144357,145847..146235)) /locus_tag="CRE_14134" /note="contains similarity to Pfam domain PF05577 Serine carboxypeptidase S28; contains similarity to Interpro domain IPR008758 (Peptidase S28)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07893.1" /db_xref="InterPro:IPR008758" /db_xref="PFAM:PF05577" /db_xref="WormBase:CRE14134" /db_xref="WormBase:WBGene00063913" /translation="MILHSIFLYLIFLLSVHSIIPNHFHFSDNFRKVDPSQLNEDISV SLSYLIQPLDPLSPESTKKFQQRYRYSEHFTSNKKTAFLYVSGRDDFNEAVLKNDGSP LVKAAERFGATIFALEHRYYGNSTPNFENFTSESLQHLDSYHAIQDVIFFIEHANTQF KMDSDVRWVLFGSGYGGIIAAETRKWDPITVSGVVAISAPIEREMDFWKYNNKVEKTI MKYDSSCYNKIKKGFRQVQDLMNFSEGRNELSDLFELNPPWNERDLALNEIQMFYLSI IAPFQQVVQYDNQLELSIKGLCDAIHDSRDSVEAIHQAHVYLSTQLTGSMQQMNSTYE KYVNDLGSKILNCLKDYQHKSCLSAQKRFWQYQMCTEFGWFPTTNDNEDGLFGSVVPL SLFFNQCFDIFPDLYKNETAIKIRDDIEKAKNFYGKYSGTNAVFINGENDPWTVLGRN VSDEFSVVTLTVPRASHLGIYKQKEIRKVQEIVMENIRVWVRGPKNSVTFMDTVEPWR RPETYDANSKSSKQKMSKQENDDRFSKFVEKFSSEKKESEDFHFFGMKPIARKFRGDE DEVFDTEGMEIGMFRQRIDHFNNKNTKFFQQKYFKNSRFARPGGPNFLMIGGEGPEYG HDVNLNSSIMRRAEEYGGTVYVLEHRFYGDSVVENNTDLSTLSSLQMLYDLAEFIKSV NFKSETSNPWITFGGSYPGALSAWMREIFPDLVIGAIASSAPVLAKTDFYEYMMVVEN SFLRYDSACYQEIKNGFDEIHELFQTDSGREKLSVLFKLNPPFRDNISESDKHFFFFD IIGPFQFAVQYAGRGSGGFVEDSKIAMLCRNITNGTQSSVENVAKVVLDDFKNKSIIH SFYDKNKWKHMKKTNENYLWRWQTCSEFGYFQSADSGNSIFGAMKPVSFQVQRCMEMF GKEYTRGKIEENVEATNYRYGGVDGFRGTNVVFINGDVDPWHILGLYNSTEKSVVSYL INGTSHCVDMYPPQDNDIDGVKIARKLVDDNIKVWLEQTGWKAETRKESTTEGSITEM VTVTERSSTTKSTVSNTFFVSMIVSVAILCRLYS" gap 144742..144751 /estimated_length=10 gene <147776..>149214 /locus_tag="CRE_14080" /db_xref="WormBase:WBGene00063914" mRNA join(<147776..147872,147923..148193,148516..148609, 148690..148890,148976..149037,149079..>149214) /locus_tag="CRE_14080" /product="hypothetical protein" /db_xref="WormBase:CRE14080" /db_xref="WormBase:WBGene00063914" CDS join(147776..147872,147923..148193,148516..148609, 148690..148890,148976..149037,149079..149214) /locus_tag="CRE_14080" /note="contains similarity to Pfam domain PF05050 Protein of unknown function (DUF672); contains similarity to Interpro domain IPR007744 (Protein of unknown function DUF672)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07856.1" /db_xref="InterPro:IPR007744" /db_xref="PFAM:PF05050" /db_xref="WormBase:CRE14080" /db_xref="WormBase:WBGene00063914" /translation="MSRDTKARSLIILLLFVILVISISNYFTVSKIEYHVISSIDIDS SNIISFFPSESIKELRKKALLNAENDRKLVSDASKKDNYQEFYKTVKVEAHCSQKERI GEKGDGGKYVCNPKKVKRDCTLMSLGLNNQIGFDKHIYEATGRQCKILGADLDPQNQR TKDSYAKMNGELFAGRIPNEITIPQILEKAGRKEVELLKMDIEKGELTALEPLIKDYF VCQIFIELHGKPSVHLEMLQKIAKYGFRIFNVDENLLCPHCCEYSMINELCMTQFEVV PLGITIPKSQ" gene complement(<149923..>153689) /gene="Cre-pcp-3" /locus_tag="CRE_14135" /db_xref="WormBase:WBGene00063915" mRNA complement(join(<149923..150457,150506..151279, 151330..152254,152346..152529,152576..153056, 153301..>153689)) /gene="Cre-pcp-3" /locus_tag="CRE_14135" /product="CRE-PCP-3 protein" /db_xref="WormBase:WBGene00063915" CDS complement(join(149923..150457,150506..151279, 151330..152254,152346..152529,152576..153056, 153301..153689)) /gene="Cre-pcp-3" /locus_tag="CRE_14135" /note="contains similarity to Pfam domain PF05577 Serine carboxypeptidase S28; contains similarity to Interpro domain IPR008758 (Peptidase S28); coded for by the following C. remanei cDNAs: DY528842" /codon_start=1 /product="CRE-PCP-3 protein" /protein_id="EFP07896.1" /db_xref="InterPro:IPR008758" /db_xref="PFAM:PF05577" /db_xref="WormBase:CRE14135" /db_xref="WormBase:WBGene00063915" /translation="MLRNLFLLAFLAATAFSILPNHYHFKEYLNKAAKNSRGNDAISV TTGYLNTPLDQFVGNASGTFSQRYFYTRQYALHQKVAFLYVSVSGDFETSVITDERNP IVITAKQFGATVFSLEHRYYGGSKPNFDKFNGTTLRHLNSYQAIMDLNAFIKYANVQF NMDPDCRWILWGAGYGGIIAAEARKWYPDTVAGVIASSAPLTHQYDFWQFNDHVQTAI MQEGGSLCYQKVAQGFADIRQAMRTPEGRSNVSDLFQLNPRLDQTNLNYNDIQQFYLA IIAPFQEVIQFNNDFNISIIDLCTSIDKGPWTPMQVIWQAWVYFSTTVTGSVQPLVTS YQAVINDLGDQSPNAQFIDQRMWQYQMCTEFAWFYTTNNNEQGMFGAVVPSSIFLNQC FDLFPDSNLTPTSIRELVINYNNFYGSAYDYSGTNVVFTNGWYDPWSTLGKEFSADFS VVTYVIPQGSWASDFFPGDSDNMFINTAHRLMIENINIWVNGPRNPRTFVNTTVPWTR PYWGEFGEVGKTLAVKNTESKFAKLGDDVPSKKTFPQPKYKKMLFGRPPHGFLPEPDY NKDATYPPGFEQGTFRQKQNHFSNQDPNTFQQKFFKNAQWAKPGGPNFLMIGGEGPEG AGWVLNQDITYLTWAKKYGATVYLLEHRFYGDSVVGDNTDFQLLSSLQMLYDLAEFIR EINYRTGTSNPWITFGGSYSGALSAWMREVFPDVVVGAVASSGPVFAKTDFYEYLMVV ENSIRTYDPTCADRIQSGFNTMRTMFLTKEGRKSLSDLFQLDPPFGDNVTDTDQHYFF SNVYGNFQGAVQYSGDNAGAYANGYGIPDMCKIMTNDDNTPLNNIVAFNQFMSIFYNG GGNYTGMDNSYQDLVNYLINAQSFGPDAAAGLLWTWQTCTEFGYFQSADTGNGIFGSP TPVNLFVQMCMDVFSSYYQRSTIDSRIDYTNYMYGERYHFRGSNVVFPNGNVDPWHAL GLYNTSTDPSVVSYLMNGTAHCADMYPARDADVPDLAIVRNRIDQNIAIWLGQAAAAT TTTTTTTGTTAAPGTGSTASPGTGSTASPGTVPTSTATTVQTTTKSATSSTVILSFIA VFARYLL" gap 159660..159669 /estimated_length=10 gene <183784..>184527 /locus_tag="CRE_14081" /db_xref="WormBase:WBGene00073801" mRNA join(<183784..183858,184006..184111,184238..184347, 184396..>184527) /locus_tag="CRE_14081" /product="hypothetical protein" /db_xref="WormBase:CRE14081" /db_xref="WormBase:WBGene00073801" CDS join(183784..183858,184006..184111,184238..184347, 184396..184527) /locus_tag="CRE_14081" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07952.1" /db_xref="WormBase:CRE14081" /db_xref="WormBase:WBGene00073801" /translation="MQTDENTTMPLARIARAYYQLATKTSRYLFSDSRQRIVAYIIIF LCFLTPSSTSFVLYQGTTAKIEYKDVNMLKEMRIEDRKVIFEFCNLVVKFPQLLVKKM THEQVRKSKPICEQLLMGIAKVREQEARAHRAHTRVLS" gene complement(<187406..>188592) /locus_tag="CRE_14136" /db_xref="WormBase:WBGene00084889" mRNA complement(join(<187406..187788,187842..188465, 188514..>188592)) /locus_tag="CRE_14136" /product="hypothetical protein" /db_xref="WormBase:CRE14136" /db_xref="WormBase:WBGene00084889" CDS complement(join(187406..187788,187842..188465, 188514..188592)) /locus_tag="CRE_14136" /note="contains similarity to Saccharomyces cerevisiae Putative positive regulator of mannosylphosphate transferase (Mnn6p), involved in mannosylphosphorylation of N-linked oligosaccharides; expression increases in late-logarithmic and stationary growth phases; SGD:YKL201C" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07900.1" /db_xref="WormBase:CRE14136" /db_xref="WormBase:WBGene00084889" /translation="MNQSILSTSNTKLSNLILEKIHEFWQQPENYKHVPVEIALELFN SNKIKMRELAWYLETSPNIPQNFEEICKGLVEKHFPQLIHEKEGMVYYNWYGFFQYCV YVQDDEDYNQQEEVHERKLKEYESQLTAMEMISAGTEMVQKIIENKREMMMTNPKKAL KIVEPAQWIQYKRFNDIDRSKYQKEYIRRLSSNEEPRNAHFSAFEEVMKKLLKEQQKD LIEKDNTKCSKAIPKKPNTKTTKKSETAVDLSFLKPYLSNDAIKRVEENAGKNSNKKG KVKKQEQKNEVNEEVKEEEKILTVRDFLKMKKESRKSSQDILKEHREQPSEEFGSKVN VDCNNRKENIENKNSNSKKEWTSKGNL" gene complement(<190491..>191397) /locus_tag="CRE_14137" /db_xref="WormBase:WBGene00063918" mRNA complement(join(<190491..190760,190807..191010, 191239..>191397)) /locus_tag="CRE_14137" /product="hypothetical protein" /db_xref="WormBase:CRE14137" /db_xref="WormBase:WBGene00063918" CDS complement(join(190491..190760,190807..191010, 191239..191397)) /locus_tag="CRE_14137" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07887.1" /db_xref="WormBase:CRE14137" /db_xref="WormBase:WBGene00063918" /translation="MLKILSLLTILVAFTVSRPTDDIPDLFLFLMNNTPAECIDQTYE LAAKLMKTKNDLELKYGNIEMLYNKELMNSLVQKFKTISDSINSPNCSTINFVKYFLD GTVFIGNEIYGEAFACLSEEDLETKFTDCNTGMVPKDSDVLEYLKPVSYCVTHKLECS PEDRKHFISAVYAGADLFETFNNGREVLKKMESNKLTLKFVPEKYDHILN" gene <199014..>200664 /locus_tag="CRE_14082" /db_xref="WormBase:WBGene00063919" mRNA join(<199014..199128,199222..199575,199634..200144, 200289..>200664) /locus_tag="CRE_14082" /product="hypothetical protein" /db_xref="WormBase:CRE14082" /db_xref="WormBase:WBGene00063919" CDS join(199014..199128,199222..199575,199634..200144, 200289..200664) /locus_tag="CRE_14082" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07956.1" /db_xref="WormBase:CRE14082" /db_xref="WormBase:WBGene00063919" /translation="MSSTRAQIEENSEELNLIFKQLVMTDQGDQDILLPKGATEQVNK TMRNESDSTTNGTSSESEDDSNETNNQSEIETPLRLGTITQLIFPFDGKMANYGTFTS QFDHLVDKVKEIKLELKQVILVKLLPSSLAEELCPAEFSEQEYFSLRIRLDQQYNYEL LTRSVDMFVRQLKTLGSNLDNEFSQHVFVCKPKGGIQLQQAPNKSQQDVEQQLYTRCE RRVQTDKKQEDVDEKTLTNKLIKEFQKSFTPDGEGRIHIGIPYTGQQGELVDNSVVAK QRLSSLLSHLQEKEAKEAYQSIIAQQKDSGITEEVKPKTSTLRPEEDSFNNKHPILVN ISFKQPSQRSVLEAENFREERKSKQKVLDWNKTQEATTNGPTTTGTGDEPTNEEFVRQ ARHKSTEVFTQPYRLSVSNIVCRQWSSDNSSGQSAHPQLAQQTSPASGQNAPLGQPDA T" gene <209525..>215730 /locus_tag="CRE_14083" /db_xref="WormBase:WBGene00077022" mRNA join(<209525..209533,211582..211660,211892..211961, 212547..212631,212678..213063,213117..213397, 213447..213911,214561..215429,215485..>215730) /locus_tag="CRE_14083" /product="hypothetical protein" /db_xref="WormBase:CRE14083" /db_xref="WormBase:WBGene00077022" CDS join(209525..209533,211582..211660,211892..211961, 212547..212631,212678..213063,213117..213397, 213447..213911,214561..215429,215485..215730) /locus_tag="CRE_14083" /note="contains similarity to Pfam domain PF00069 Protein kinase domain; contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related); coded for by the following C. remanei cDNAs: DT935593" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07888.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR017442" /db_xref="PFAM:PF00069" /db_xref="WormBase:CRE14083" /db_xref="WormBase:WBGene00077022" /translation="MPDSITNGGRPPAPPSSTSTGTTSSTSNFGTRRRLVNRIKKVDE LHPAQENPTMGSHWLSGEERSRLEAVQQDWRRTRPMKFQWGTKPRRPDETSATASTSI ASDVPSGSNTTSFINSSIPMTATTSTASSTISSHPTTHNHQASRIPQAIGTNGTLPPL LISPTSAATPLVSGKGGPMSPSTGSPINVAATVLQNAVSSPQHSIFDRSRLTSKIPPS TSASNDAGDKDKPQQRLGILSQVRTLTDALVNEGPRTLTGDEEKISEEERARKEAEKR EEEEKAARKIDVEDDFDAQEKPIDKSKNGRFLKFDEELGRGSFKTVFRGLDTETGVAV AWCELQESKLNKTERQRFREEAEMLKDLQHPNIVRFYDYWESADLCGKRKYIVLVTEL MTSGTLKMYLKRFKRINIKVLKSWCRQILKGLSFLHTRNPPVIHRDLKCDNIFITGTT GSVKIGDLEYRLNILEIREIIDRCIRVRREERSTVKQLLVDDFFTPEDLIGIRVEIKN RDADLNDLNVEIQMQLRVYDEKKRKQYRFKENEGLQFAFDIENDSADEVVQQMIEQQH IPDEDTRMITKLIKDKVDAFRRDRDHRLLEIKRAKEEEERIREEAEIKEELKLRAEAK ERERLEKERLEKEAAAAAIAAANPPPIPPTPATPHSSAQQPIPPPLSTQTSTELTQQS AVPQQSVPVTMVANIPVMSPTQPQAPPVLSPTTAAPPTVPATMIHVPKPIEIPVQTVP APTVQSNTVPPSPAPVKQEDLQTPTLAQNTVPRTISTDSSALQVNTPASIASPAPSVL SNNDTVGSVSTTTAPGYSGPQHPRRLLMDSC" gap 213932..214399 /estimated_length=468 gap 215777..215786 /estimated_length=10 gene <215810..>220089 /gene="Cre-wnk-1" /locus_tag="CRE_14084" /db_xref="WormBase:WBGene00063920" mRNA join(<215810..216217,216268..217020,217073..217492, 217664..218125,218784..218836,218896..219121, 219697..>220089) /gene="Cre-wnk-1" /locus_tag="CRE_14084" /product="CRE-WNK-1 protein" /db_xref="WormBase:WBGene00063920" CDS join(215810..216217,216268..217020,217073..217492, 217664..218125,218784..218836,218896..219121, 219697..220089) /gene="Cre-wnk-1" /locus_tag="CRE_14084" /note="contains similarity to Leishmania braziliensis Proteophosphoglycan ppg4.; TR:A4HM87; coded for by the following C. remanei cDNAs: DR408642" /codon_start=1 /product="CRE-WNK-1 protein" /protein_id="EFP07875.1" /db_xref="WormBase:CRE14084" /db_xref="WormBase:WBGene00063920" /translation="MMEILGCDESRNFALVSCRLDTSHKSVTFQFAPGTDKPNTIATK LLAEDCLLKIHVHIVEAQLSEVIQLVNTDSKKGVGTKLATVLDPNSTEPPTITAVMPK DSVAVAAATRPRIEIEKTPPTRESSQEPNNVQVTNVRKVSQESNAESVQSIPRPAVTS PTNHSDPGTTAPPIAPAKPSRFQVTKSADPIAATPTTVVSTTTITPVIAATPPTTAEP VIVQPITSHVITHLATPSPVAHSLSSNSSPSATTHSNTSSIQSTTSVPGRRFTVQPVS QAESGISSSISTPHPEAAGAIIPTGPPPVPSVPPVVATASLNLEAFGQPTTKQFVVET VPSSSTASTATLVSEPPAVVQTIPISVPAPVQEPLVVNSQPDVLTQLESELRKVSGVS HSASPSTVVESHTSMTPQTIPLACQTVPASIGQAPAVIAAAHAAALIPNASVPQSPSR LDAESGLAGLHEKLEALKLEQDRREEGDEQAAIDGKDEIPIDTLKGLAEALGKVIHTD GRETTPMPPDHPDLTDASTQQLVSPPNPDLLSTMSAPADGSLSSTMLEDMADVTLTSS VPQTTPSAPATTEAIPAAMTMSTDQECAQSMTSSMTRNTTGTKLATFENLETALSSTL GTHIRQPNAPSSRDETTAPMTPSFTNERNGGGGGAFSIGTPPSHSPFPVSECDYDLKG QMDMEGEDPEVIQMIVRHRMEQHKLLEKQRLEIERLRSKVRVPPRATSVNPEMIDDDA DTTLQSLQQSLTNASISLPASPPPNIEVGVNETVKLIPRTLLMTHQIPDNDENTPERS DNNIIGRVGTPHDTVSIVEQIKRRLGFLPSPGQSIGSSSTPQQSPKPPPPPRFISYCC ALSSTPPSHHQQQPPSHGELSPANTTSSGSSSSSDSSTDSSTGLIDNA" gene complement(<224788..>225948) /locus_tag="CRE_14138" /db_xref="WormBase:WBGene00063922" mRNA complement(<224788..>225948) /locus_tag="CRE_14138" /product="hypothetical protein" /db_xref="WormBase:CRE14138" /db_xref="WormBase:WBGene00063922" CDS complement(224788..225948) /locus_tag="CRE_14138" /note="contains similarity to Pfam domain PF00078 Reverse transcriptase (RNA-dependent DNA polymerase); contains similarity to Interpro domains IPR000477 (RNA-directed DNA polymerase (reverse transcriptase)), IPR015706 (RNA-directed DNA polymerase (reverse transcriptase), related), IPR003286 (Nematode reverse transcriptase-like)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07877.1" /db_xref="InterPro:IPR000477" /db_xref="InterPro:IPR003286" /db_xref="InterPro:IPR015706" /db_xref="PFAM:PF00078" /db_xref="WormBase:CRE14138" /db_xref="WormBase:WBGene00063922" /translation="MPTWLFTEKIHNMLETLNDWTTMLDNQSQVDVIYLDFAKAFDKI PHDILLNKLIALRLIEHLIRWLNDFLTDRTFQVKVGSQLSRFRSAPCGVPQGAVLSPV LFGIFVNELSSLLPENVHYKQFADDTKLYSSVNNKTVENSLQKGIDIVVEWSRSSKLP LNNAKTVALTVGKVRKETEYSIDGQTIKKENLTRDLGFLISNKLDFTEHWRKTTNTAK FLTAQIFNQYNSKKIRLMVLLYKTFIRPVLEYGNSISSPLKVSDENLIESVQNSFTRR LYSRHTGKYLRPNDPGYKTSIEHQLYGLSSLKDRRLQIDKKLIEKMMSGKIDLNTADF FTLSQNNRTRAKTSFVWKRPKNKLRRKFFVNRTLTYLTQLNSTSNAPQRSLV" gene <226295..>227553 /locus_tag="CRE_14085" /db_xref="WormBase:WBGene00075651" mRNA join(<226295..226305,226503..226721,226934..227091, 227438..>227553) /locus_tag="CRE_14085" /product="hypothetical protein" /db_xref="WormBase:CRE14085" /db_xref="WormBase:WBGene00075651" CDS join(226295..226305,226503..226721,226934..227091, 227438..227553) /locus_tag="CRE_14085" /note="contains similarity to Brugia malayi Putative uncharacterized protein.; TR:A8PY57" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07894.1" /db_xref="WormBase:CRE14085" /db_xref="WormBase:WBGene00075651" /translation="MPVLISTPDPSSSSQKSGCHWFGTAPFCYQTCPSDYDFIRQHSG RCADGTACIPDSSFGEPCIKLFSYQMTKKFCCKSDPVDCSWSGRWMGSEDAFNFYCRF DPDQGKCGKLECSVNHPLFKAHNSSFIEGENCDELRMWNLRGKASCGYIAWFERGEYR NGWYKTF" gene <228992..>229219 /locus_tag="CRE_14086" /db_xref="WormBase:WBGene00084905" mRNA <228992..>229219 /locus_tag="CRE_14086" /product="hypothetical protein" /db_xref="WormBase:CRE14086" /db_xref="WormBase:WBGene00084905" CDS 228992..229219 /locus_tag="CRE_14086" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07944.1" /db_xref="WormBase:CRE14086" /db_xref="WormBase:WBGene00084905" /translation="MLKAFSEFCDAIYPMFRVMTVGFSENEDETTRIIESASEPKRTL QNLTLFTLALLIPVLISFFMYSLDLQDWEAK" gene <232195..>232545 /locus_tag="CRE_14087" /db_xref="WormBase:WBGene00084891" mRNA join(<232195..232339,232445..>232545) /locus_tag="CRE_14087" /product="hypothetical protein" /db_xref="WormBase:CRE14087" /db_xref="WormBase:WBGene00084891" CDS join(232195..232339,232445..232545) /locus_tag="CRE_14087" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07902.1" /db_xref="WormBase:CRE14087" /db_xref="WormBase:WBGene00084891" /translation="MHIIPPGLYRVDVLILISYQMCHFFSIQQLFPIFLNYTPKTACV ETAQGSPPRTQYGRYMGRAWTQHEFAEDCMWSVYGPF" gene complement(232363..232446) /locus_tag="CRE_31827" /db_xref="WormBase:WBGene00186235" tRNA complement(232363..232446) /locus_tag="CRE_31827" /product="tRNA-Leu" /db_xref="WormBase:CRE31827" /db_xref="WormBase:WBGene00186235" gene complement(<232743..>234644) /locus_tag="CRE_14139" /db_xref="WormBase:WBGene00084902" mRNA complement(join(<232743..232803,232852..232965, 233013..233103,233153..233252,233301..233486, 233537..233599,233629..234174,234219..>234644)) /locus_tag="CRE_14139" /product="hypothetical protein" /db_xref="WormBase:CRE14139" /db_xref="WormBase:WBGene00084902" CDS complement(join(232743..232803,232852..232965, 233013..233103,233153..233252,233301..233486, 233537..233599,233629..234174,234219..234644)) /locus_tag="CRE_14139" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07936.1" /db_xref="WormBase:CRE14139" /db_xref="WormBase:WBGene00084902" /translation="MVRTRIKKSNDAVDSVGIPAAKRVKNKKEPVSNETYKTKTVSKE ISKTKPVSNVTSKTKPVSLECSKKKPVPIEPERFGLNCTLPPTPSFEDDMLIDENSGS CEYVENETTATEDTSKIHKEAATYHQLRNVKMERAINCVKQEFFETPKTPRFPPTNFF KKKNSTSRQTAPLQDLVDIDNSSSSMFSDGMRNVQSDAPTSAPLVTTPSYAARVTPFL HSKTGEGSQFSSNNDKWNPIGFTVNNLYNLEKGIPLSRSECEVDNFSYNYYSIHVLQE NLQKLSKTVQETDFYPILELAQKFHNVNSDLEKLTLGLAFNTAMVTDTNNKLVNRLRQ AEKSKGIYDRECDFIKGIGFDLRKATENEENVMLPCKKIFKLSSIVTPSEAAKWTSSR FYGDARLLFRFVFKEVAKRDPFFVAYSAQDYSNAGYIPFGDKFFGPLVRFVIRGFRQD SDLNIQTTLQCVARETMTNFVDRFRKEYKAQMDTTPKEVAFTLKQYLEEVKELDEGSY VTALDLSTTNPPQFDYACLI" gene complement(<234927..>237727) /locus_tag="CRE_14140" /db_xref="WormBase:WBGene00063924" mRNA complement(join(<234927..235527,235574..235722, 235767..235973,236018..236166,236206..236373, 236424..236788,236832..237074,237119..237257, 237433..>237727)) /locus_tag="CRE_14140" /product="hypothetical protein" /db_xref="WormBase:CRE14140" /db_xref="WormBase:WBGene00063924" CDS complement(join(234927..235527,235574..235722, 235767..235973,236018..236166,236206..236373, 236424..236788,236832..237074,237119..237257, 237433..237727)) /locus_tag="CRE_14140" /note="contains similarity to Pfam domain PF06869 Protein of unknown function (DUF1258); contains similarity to Interpro domain IPR009667 (Protein of unknown function DUF1258)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07891.1" /db_xref="InterPro:IPR009667" /db_xref="PFAM:PF06869" /db_xref="WormBase:CRE14140" /db_xref="WormBase:WBGene00063924" /translation="MPSSIFKDHSNRKRVHDDKGKSPRRRIMKNPIELADIMHPRVEE RESLPRPRRDSESFDFLSTNEEVNDSNLTLDFGELEVDHDCEGNGSNALISGRKGFER FLSAHDEDFASSVRKIWDHKKNKCSISYHCNKCGSNGKDNVKCCNELPAKFVRNGIMG QLQQLMSAYLNKIISIRKELKEGKQQTHNLASQFFSPLRDLEENEYELRLSGILSIDG VAVPGTQKKLWPISLMLVDLPTNDMQKSSNVMLEGIIESSSNPSTTLWNAVLPIIMTD CESREGTVGKYKYKLHIATVCADQPVMWVKQILMIENVQAKRSLFGMRAHHGSSSCFY CLSPGTFYKMEGEKRVEKRPGNLTVLDSEHGVNGFGTVPALIISYVKPYETPIDLLHN LGEGICEHITKELFSKVNKIIPKSDLFVCNSDDLQNTLDSVTLPTSFSDISNCRNGTD KISFFRLNIALSAIHGDFLKAEARFAIVALSMIANKMFATGMGPPLFDEQMCAAARWF LKEASNEYLNCKTHELLFHLPDVIHTFGNVGPLGTFAFESSYQFALMGYSSRLTRNFP ETVCSRVLIHNSIRREVSRRSTHNPSSSFKKFLSFTKGLSPQQVSCKNVISSQMEPED KPFSEGRILYGSLSLPCGRLISEYHDRNTTDDVFYAVKENGQLECHRFVAATMELGEI QLITEPFSEIDDVYQFSSLSKALQELDGTNFYYGQEVIRMLKEYEGVKYCRLSEKRVV VPLKSVISIGSYIDCGDGLCVLAVNGTMIHN" gene <237856..>240096 /locus_tag="CRE_14088" /db_xref="WormBase:WBGene00063923" mRNA join(<237856..237888,238211..238853,238898..239121, 239493..239786,239831..239985,240033..>240096) /locus_tag="CRE_14088" /product="hypothetical protein" /db_xref="WormBase:CRE14088" /db_xref="WormBase:WBGene00063923" CDS join(237856..237888,238211..238853,238898..239121, 239493..239786,239831..239985,240033..240096) /locus_tag="CRE_14088" /note="contains similarity to Pfam domain PF07690 Major Facilitator Superfamily; contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR011701 (Major facilitator superfamily MFS-1), IPR005829 (Sugar transporter, conserved site)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07946.1" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="PFAM:PF07690" /db_xref="WormBase:CRE14088" /db_xref="WormBase:WBGene00063923" /translation="MDDFANPYTVHCLQYDNFPNVCANLTGTALSECHTTKSHSYYSS AAMEFEIYCRPGWKDFRPAFVQYVGVLIGNIILGYVADQMGRKKTFILSMLIGIPSLS LSATFNSIAAFYFFRALTGIGIAGTMIVGWAYFSELVSPHQRFKLRTFSNWANARIML TLVALLTGEWRLSSHVSACISLITLAIVYFILPESHIWLRKKGRYEEAEESRKRIAAL AGIEFVPMPPPEKVENAEPEKAVNILTVFGDPQLRKNILILWLMWFVTGMTAYLTDLC GGDMTANFWIGQFLSGILLSVVRIIMGFADGYLPWMGRRFVLLSCQSLAIFFFGCVIA FLYAGEKGQWYYTAVYLASFVFTSICWEPCYLCASELMPTDVRATSTASCSIVGRFAN IGASMLSGLKTIYEPGVHMISISLGLTNVIAAYFFLQETKNCSLDKAGTSASKPVEKA NEQEMKDLIDRTVAEDVEKK" gene <240438..>242076 /locus_tag="CRE_14089" /db_xref="WormBase:WBGene00063925" mRNA join(<240438..240714,241159..241658,241708..>242076) /locus_tag="CRE_14089" /product="hypothetical protein" /db_xref="WormBase:CRE14089" /db_xref="WormBase:WBGene00063925" CDS join(240438..240714,241159..241658,241708..242076) /locus_tag="CRE_14089" /note="contains similarity to Brugia malayi P40, putative.; TR:A8NU76; coded for by the following C. remanei cDNAs: DT936162, DY527266, DR406894, DY526566, DR778598, DT936826, DR777177, DT936840, DR778209, DR780915, DY526842, DY524687, DR408677, DR409503, DY525306" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07864.1" /db_xref="WormBase:CRE14089" /db_xref="WormBase:WBGene00063925" /translation="MAPKPNPPPKEDTWAFQPIGSPFPPSPVKCMGEQNMYVALWYKH GKPIHGRSWNNGGVVECSFPYKEAELTTKAQLEGQIQVLQYVGDHNNQGFWYEWIKYK DRIEKLDDKHQLVRCGDSFPIFWKRKEGNLLGYVDNKTEEAWFSFNGKVIKQVGPQLN DMYIITRNCIGGPPHCECDNCPKPPPPPPIPPPGPPPPRVMHDEWIDIREGDPFPTRK LVQALDKTLDTLPGVNPDQYVALWYMQGEPVMGRVWNEGGKVAANFSWFNNEYCKGVG SIQLLVRLGPHVVGYEYGWIPFPEAATFEEGKTWKPVHVNNHKGDISVGVVNLAGGKQ ILAKVDVRNESYGYGYQGKEISARGPACASSVTVLCRKALPGYKLDG" gene <242886..>243589 /locus_tag="CRE_14090" /db_xref="WormBase:WBGene00084881" mRNA join(<242886..243187,243235..>243589) /locus_tag="CRE_14090" /product="hypothetical protein" /db_xref="WormBase:CRE14090" /db_xref="WormBase:WBGene00084881" CDS join(242886..243187,243235..243589) /locus_tag="CRE_14090" /note="contains similarity to Pfam domain PF00646 F-box domain; contains similarity to Interpro domain IPR001810 (Cyclin-like F-box)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07870.1" /db_xref="InterPro:IPR001810" /db_xref="PFAM:PF00646" /db_xref="WormBase:CRE14090" /db_xref="WormBase:WBGene00084881" /translation="MSLPLCQFPLLIHVEIFKHLELESIFMLSLCSENTKRLIQRIRL KSKKLRYTVEDDQVSVLGGFTDDERDLKLIATMKCVTSISRKKTISVKLGGEPIKCRF ERSSHTLKHLEPENKNVIELLKNHIDSLFHSKPIIQLKLHSPDSLSTSNSRPPASSVV LLPPQSSSCLLSRPPASSVVLLPPQSSSCLLSRPPASSASGPIPSPLILIFFLPSLTL " gene <243676..>247460 /locus_tag="CRE_14091" /db_xref="WormBase:WBGene00063926" mRNA join(<243676..244353,244500..>247460) /locus_tag="CRE_14091" /product="hypothetical protein" /db_xref="WormBase:CRE14091" /db_xref="WormBase:WBGene00063926" CDS join(243676..244353,244500..247460) /locus_tag="CRE_14091" /note="contains similarity to Pfam domains PF00078 (Reverse transcriptase (RNA-dependent DNA polymerase)), PF03372 (Endonuclease/Exonuclease/phosphatase family); contains similarity to Interpro domains IPR000477 (RNA-directed DNA polymerase (reverse transcriptase)), IPR015706 (RNA-directed DNA polymerase (reverse transcriptase), related), IPR003286 (Nematode reverse transcriptase-like), IPR005135 (Endonuclease/exonuclease/phosphatase)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07960.1" /db_xref="InterPro:IPR000477" /db_xref="InterPro:IPR003286" /db_xref="InterPro:IPR005135" /db_xref="InterPro:IPR015706" /db_xref="PFAM:PF00078" /db_xref="PFAM:PF03372" /db_xref="WormBase:CRE14091" /db_xref="WormBase:WBGene00063926" /translation="MEVNTYDKEIQGQTRERCQKRTIRDSPNIDRKRAKSASSSIDTT GGFSQLETTDNSKLMDFSRIFNNESSNLETPKEVIEVIKGMASALTLIHNQNRTLITQ NKKLSEKVVSLELLVGSIVEKMPVPSSLGKMNEAVPTEQPNYPKSYSNAASKNLPKKT PSKSGPTKLREAKLLNVTPTTIAGPQVKPSQRGDTRKSTVIIKNVNLSGPPENDKDAV SELSNACGCCSAKPLQNRSPEIPSILEGSNCTEQRTEIPLVHCFQSEGDKNKLQRRTV ALGMGNKRTCNHVGKISIGYANCNSISNKLSKLDLLCEYYNFDVFCLSETKLDNSFTD SLLSINDNYSILRKDRNRHGGGVGILIAKHIRFVPVDLPASSQSAEVCAIDIFAGGTT IRIITAYHPNHGHSKSTLFDTLEYLLIPGKHTVLLGDFNMPCIDWNLLSAPDKACADF VDFVVKHGLTQSVKSPTRFNPENILDLCLSNTGIISDVSVGDLFSDHCLIKVVLSCDR RSLKSLRKIINYRKGDYDSMNGILSRIDWPLLLANLPTNDMYSLFIGYLKELIYNYVP ILEIDESKVRHSPAIIKLQKRKLRIWKKEGNSLHYKSICASIKELLLEEHKKKFEDKL VEGNPKNFFKLINRKLKPSNFVGPIKSGNGILCDDHEKAECFLSTFSEVFVSDDGLTP SIEPRTTTLIDEVSYDPYVIEYALSKLEPKCNNSPDGIPYIILKKLCTSIALPLSLIF NQSIRSGSLPDVWKTAIVIPIYKKGSRSDPGNYRPISLTCSISKVMEKLVRRSLIEHL TRNKLLSISQYGFRSRMNTELQLLTYIGLIIRDLQKNNPVTSVYIDFRKAFDTISIFK LASKLQAYGVQGELLRWINDFLSGRSQRVLLNGVCSNTSSVGSGVPQGSVLGPLLFIL FINDIGDKLESELLLYADDLKIISPNAATIQKDLMKLSEWCQTWQMKVAPSKCEYITF VKSKRTNLRVNSNINIELDGLRLPQCDYIRDLGIIFSRDLSFDSHINSILRRAQCRIN ILFNVLKNSVFDIMLKCYKVFIRPIMEYGSTLYSPTLKCLIRKVESVQKSFLYRCSKK FNFEYLSYFDTLEAYGLESLELRRLINDLVYLYKILVSNEFYSPNHVYTSFTHFQSLR RHSYHIKPILSNKTKFGSQYLPNRLLSCWNSLPVHVFPVKSSSRCFKNNVKRLNLSKY LTLNISTY" gene <247937..>248304 /locus_tag="CRE_14092" /db_xref="WormBase:WBGene00084893" mRNA join(<247937..248118,248178..>248304) /locus_tag="CRE_14092" /product="hypothetical protein" /db_xref="WormBase:CRE14092" /db_xref="WormBase:WBGene00084893" CDS join(247937..248118,248178..248304) /locus_tag="CRE_14092" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07907.1" /db_xref="WormBase:CRE14092" /db_xref="WormBase:WBGene00084893" /translation="MYSPLIKMIRKWQKKEGLHNLHAVVIHTFASDDFIDELLDELNV LDWDGIRRPKMFNYDPRIINNSKSMIDFSDAYDIQQEDGGKWGSIIAAKNQIAFVVWD " gene <249766..>250071 /locus_tag="CRE_14093" /db_xref="WormBase:WBGene00084896" mRNA <249766..>250071 /locus_tag="CRE_14093" /product="hypothetical protein" /db_xref="WormBase:CRE14093" /db_xref="WormBase:WBGene00084896" CDS 249766..250071 /locus_tag="CRE_14093" /note="contains similarity to Pfam domain PF00646 F-box domain; contains similarity to Interpro domain IPR001810 (Cyclin-like F-box)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07918.1" /db_xref="InterPro:IPR001810" /db_xref="PFAM:PF00646" /db_xref="WormBase:CRE14093" /db_xref="WormBase:WBGene00084896" /translation="MTIPFNRFPLLVQIEILSQLGFQDIFLLSLTSEKMRNLIQFIKL KPKKVQYALSDNGIQVSVGFTGDDKDFHHMANMRHVPQISVKERKQVNLGGVKIQSR" gap 250965..250974 /estimated_length=10 gene <252545..>254912 /locus_tag="CRE_14094" /db_xref="WormBase:WBGene00063927" mRNA join(<252545..252828,252875..253245,253292..253710, 253785..>254912) /locus_tag="CRE_14094" /product="hypothetical protein" /db_xref="WormBase:CRE14094" /db_xref="WormBase:WBGene00063927" CDS join(252545..252828,252875..253245,253292..253710, 253785..254912) /locus_tag="CRE_14094" /note="contains similarity to Interpro domain IPR007087 (Zinc finger, C2H2-type)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07865.1" /db_xref="InterPro:IPR007087" /db_xref="WormBase:CRE14094" /db_xref="WormBase:WBGene00063927" /translation="MNFFLLLFSIGLVSSLPPDETVPSKKMKTEKPEEKLNQPVSTTP DFSQSSSSINVPDQSESSSCYFSKVRKSELEQKERSSFTKVTTSCGGNLVKWSSLLDT FKGKMFGAQNEMNLLAARGAAEYHDFNNPEVNKEVGNRMICDQHLKELVTEWATSKNP NHIRKEYDSGKVQLKCGMPSDVSPHSTLTIPKVSHDVLTRDDAQRLLHEHHSHVHIGT PLCKFHKDFVSVAQCIGLFESSVSIDAPVAKRLRSAVAKYSTDSESCTSDQVMDVDEN DDTNSQSPAENPEHNDGVCDTKFFEWAKSLGIERIVSRKPFSQLSRRSKMRKASVINK LVSEALELLAPGNSKELKTFFLDLIKGIQNMYDFRFNNSNSEMISRKFGLIGDGTKHD SRKFVAVKGTMTIETSGGYGISDHETFWKSSKCSKKCSEEDIEVQTAAGEIIPFNDAD VDQGEHTPKPMESAVFECPEEGCTAVFTKYGNLERHLALGKHQLVPEKETLLDFAMER FAETIEGLREHSTPNTLKDALTTLPAGVLPFSNQKGWAIPSKKVYKKYNKDVVQFVMK KFEDSSKKKLKIYPKIIAKELREQKNDGTLQFAPDTWLNYKQISNLYQTFGRKSRELE EKKKKEKKTSKGNQSTGTQVPPTIPSSIRTPQNRASATRKPKTTSTGEESKKRSRRET TEELVDLVLEELNQKEYDDSEEIYDEISEENQDFYHLIEEIEKEKQEIFDS" gene <256225..>257057 /locus_tag="CRE_14095" /db_xref="WormBase:WBGene00084883" mRNA join(<256225..256880,256931..>257057) /locus_tag="CRE_14095" /product="hypothetical protein" /db_xref="WormBase:CRE14095" /db_xref="WormBase:WBGene00084883" CDS join(256225..256880,256931..257057) /locus_tag="CRE_14095" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07871.1" /db_xref="WormBase:CRE14095" /db_xref="WormBase:WBGene00084883" /translation="MNIRINDTYNQSVFRCTKKPPTQIWTHVLEYLEKEDDNALEFLQ THLESLFVNQPPSQLKIESTNSLQSSEIIDNVTDTIFSLDELETTEIKHFLTVRPNQK SVEIHSDLTGRPLKRVSKLFKVPGLAIHESGSMTSKYMDNFSGRCLLLFNANVTYSAW TTLIEKWKNKTAYHKLHAVVTRVPRNVFQEFHFGELLFESNALPWDGISRPRNFMFDP RIPSYRSKSIDCSDWFDIQQNGGGKWASIQIINDKIMFFVWD" gene <262296..>266743 /locus_tag="CRE_14096" /db_xref="WormBase:WBGene00063928" mRNA join(<262296..262351,262851..263027,263148..263335, 263574..263763,263860..263990,264154..264342, 264934..265105,266067..266202,266555..>266743) /locus_tag="CRE_14096" /product="hypothetical protein" /db_xref="WormBase:CRE14096" /db_xref="WormBase:WBGene00063928" CDS join(262296..262351,262851..263027,263148..263335, 263574..263763,263860..263990,264154..264342, 264934..265105,266067..266202,266555..266743) /locus_tag="CRE_14096" /note="contains similarity to Pfam domain PF05978 Eukaryotic protein of unknown function (DUF895); contains similarity to Interpro domain IPR010291 (Protein of unknown function DUF895, eukaryotic); coded for by the following C. remanei cDNAs: DR776624" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07920.1" /db_xref="InterPro:IPR010291" /db_xref="PFAM:PF05978" /db_xref="WormBase:CRE14096" /db_xref="WormBase:WBGene00063928" /translation="MESSNIPYVLEENSAKPRRFWMELTPRRHELLCTYLLGIGTLFL YTGYSLQQFIGESVIHSIHEKSPDTISAYAGYYGAAFHLSAFALCTLVTPSLQHFVPS KWFLTLASALFAVYYLGFFHLNKYYFYLTQALMGIGYSFYNNGEGQYLSEHSSRRTIE SNTGIETAVGHASMFFGGIALIVLCFLLHTEGGNGIEYSDLQIRFIYGTMFILNVFSV VVFAFLPTKQYDSIASKSSTVVPSLANQIKQFLKTFQSKNLLILMPFFFFQGFAVSFL MTVYPTTLSFTYAFKTDIYIIGIYSVSMGIAEAIGGIFLRPLLKRAGDYGLYVIAATN FLSYSIIIILAVLSIPNLATFGPTNSAPLFLTPSRLLVFIIGFLIGFSDFCVTMARAV ICQVAVPDCRMQVFSLSKLYQSGSSVIVLLLTPYMTIYIWLCVLTVFLFIGTTGFVIV ARRTTADRQKHSVAHPSQAQLADKI" gene complement(<266983..>270321) /gene="Cre-rab-28" /locus_tag="CRE_14141" /db_xref="WormBase:WBGene00063929" mRNA complement(join(<266983..267048,267688..267844, 267889..268040,268092..268256,268373..268438, 268485..268571,270211..>270321)) /gene="Cre-rab-28" /locus_tag="CRE_14141" /product="CRE-RAB-28 protein" /db_xref="WormBase:WBGene00063929" CDS complement(join(266983..267048,267688..267844, 267889..268040,268092..268256,268373..268438, 268485..268571,270211..270321)) /gene="Cre-rab-28" /locus_tag="CRE_14141" /note="contains similarity to Pfam domain PF00071 Ras family; contains similarity to Interpro domains IPR002041 (Ran GTPase), IPR003577 (Ras small GTPase, Ras type), IPR003578 (Ras small GTPase, Rho type), IPR005225 (Small GTP-binding protein), IPR001806 (Ras GTPase), IPR003579 (Ras small GTPase, Rab type), IPR013753 (Ras)" /codon_start=1 /product="CRE-RAB-28 protein" /protein_id="EFP07863.1" /db_xref="InterPro:IPR001806" /db_xref="InterPro:IPR002041" /db_xref="InterPro:IPR003577" /db_xref="InterPro:IPR003578" /db_xref="InterPro:IPR003579" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR013753" /db_xref="PFAM:PF00071" /db_xref="WormBase:CRE14141" /db_xref="WormBase:WBGene00063929" /translation="MATMGEDDAPELPKKSPVPGQIDDSDGEDDIEDKVIKIVVVGDG ASGKTSICQRFAKESFDKSYHQTLGLDFFSRRIMLPQEMQVLVQVWDIGGQSIAGEMI DKYLTGANIVFFVYDVTNSKSFENVGDWLSVVKKNLKGSENDVKLVLMGNKTDLEERR VVPVDSHRNFSNSNNMMPTYVSAKTGDTVYMIFRQAVADCLKIGLSRAEIESDIDIVQ GSVIEATKVGGKVADGVGDTRKVHFVEDKDTAQVQRSDQSRNTSVCSIS" gene complement(<272604..>273735) /locus_tag="CRE_14142" /db_xref="WormBase:WBGene00063930" mRNA complement(join(<272604..272705,272754..272903, 273454..273519,273568..>273735)) /locus_tag="CRE_14142" /product="hypothetical protein" /db_xref="WormBase:CRE14142" /db_xref="WormBase:WBGene00063930" CDS complement(join(272604..272705,272754..272903, 273454..273519,273568..273735)) /locus_tag="CRE_14142" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07945.1" /db_xref="WormBase:CRE14142" /db_xref="WormBase:WBGene00063930" /translation="MYLFLFLFSFPFLANYVKSDDNILMPFERFQYDLERFLPVVEQE VEFAELSSLTDDQAYEQIKTFFPTLQLRIQQLRNTGIIADTNRIKHKEGATQMCGQGH NFAYLLVDHKLRNINVVLNRKRISAVNNLKMLREIRDALIKWGLSSKFPCQRLHAYKK G" gene <276605..>278132 /locus_tag="CRE_14097" /db_xref="WormBase:WBGene00084906" mRNA join(<276605..276683,276737..277111,278026..>278132) /locus_tag="CRE_14097" /product="hypothetical protein" /db_xref="WormBase:CRE14097" /db_xref="WormBase:WBGene00084906" CDS join(276605..276683,276737..277111,278026..278132) /locus_tag="CRE_14097" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07947.1" /db_xref="WormBase:CRE14097" /db_xref="WormBase:WBGene00084906" /translation="MPTPRRALKRQAEKIDTDEIIRTLVLRGDPIIAQNLGFLKNLSS KEIDDPMASVMDSLKEGLTEEDLKLNRNLENLINPKVEVHMTDEEIMNFLLSSKYSGK ACAQIMDRNQWDENERIHKEKETKKKEKEEKFEVEKKKNDEKKDDRKRPADDASNQGA STSAPIRSPPAPFGLVKPYKIPRKSK" gene <281235..>285704 /locus_tag="CRE_14098" /db_xref="WormBase:WBGene00063931" mRNA join(<281235..281407,281496..281653,281770..281914, 282736..282892,283819..284001,284073..284241, 284528..284648,285512..>285704) /locus_tag="CRE_14098" /product="hypothetical protein" /db_xref="WormBase:CRE14098" /db_xref="WormBase:WBGene00063931" CDS join(281235..281407,281496..281653,281770..281914, 282736..282892,283819..284001,284073..284241, 284528..284648,285512..285704) /locus_tag="CRE_14098" /note="contains similarity to Pfam domain PF02958 Domain of unknown function (DUF227); contains similarity to Interpro domains IPR012877 (Protein of unknown function DUF1679, Caenorhabditis species), IPR004119 (Protein of unknown function DUF227), IPR015897 (CHK kinase-like)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07910.1" /db_xref="InterPro:IPR004119" /db_xref="InterPro:IPR012877" /db_xref="InterPro:IPR015897" /db_xref="PFAM:PF02958" /db_xref="WormBase:CRE14098" /db_xref="WormBase:WBGene00063931" /translation="MGCGSSSAAEVAPAEIVEPSPSSDVPSDPKIPTSYRPSIISLQI PNEFGDDVSSDALSDRSDAQEENVDYLYATDVTLQWLLERIADKFKKPIPEDPQWIIE RLNRPSWDLDYATSSVVRVTFGWDDDDLPRSVVLKTPVAKDQRDDEEGKYHYIMFKRE CNVYEWTQKFPKLVAPNIIHIKKHSKEGSGVVVMEDVSEKGQEQDPVKGLTLEVVRDL LKQIAYLHSVSLKHTSWSTLVADLPPSYYAHTIGNFDETMTFFERSDVDHSRFVHIGK YFSDEYLHSTATETTELLEIPKVLVHGEPYASNVFTKMEGKEQRILSLIDWTEGHSGC FAEDVAKIICWNLNAKERVDNTASLLEGYHFHLARYYDGDCPFTVDIIQRCYELFVPF AMVSLCGKVMSVKNKTEKEPLIERAKSLIQQVYAMERLNE" gene complement(<285884..>287518) /locus_tag="CRE_14143" /db_xref="WormBase:WBGene00063932" mRNA complement(join(<285884..285985,286641..287030, 287158..287355,287402..>287518)) /locus_tag="CRE_14143" /product="hypothetical protein" /db_xref="WormBase:CRE14143" /db_xref="WormBase:WBGene00063932" CDS complement(join(285884..285985,286641..287030, 287158..287355,287402..287518)) /locus_tag="CRE_14143" /note="contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain; contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07912.1" /db_xref="InterPro:IPR000535" /db_xref="InterPro:IPR008962" /db_xref="PFAM:PF00635" /db_xref="WormBase:CRE14143" /db_xref="WormBase:WBGene00063932" /translation="MSVVFAFIFLLVNTVVLSTILFQCATAKRSNQHENKSKKSTQSR KSSRSGKSSRSRKSSRSGRSTTSSKSGKSSRSGRSGKSGKSSKSKSVKSYKLKPNPKG QSNKKVQAAILADQKAAKDAINPSLKEVHDLSTSEKQMNQLVTKKEGNSKVSYTNIRV IPHEISFPQIGGLKHVRIKNSSGKRIVYMVKCSDNMMYSINPVYGIIENDKDAQINIL RENGEAKYDKLVIITAVHTDKNKTAEQTFASLNDNNSHDYNINVVPLLIQ" gene complement(<288110..>291113) /locus_tag="CRE_14144" /db_xref="WormBase:WBGene00063934" mRNA complement(join(<288110..288188,288681..288780, 289090..289198,289560..289663,289710..289853, 289967..290081,290634..290757,290992..>291113)) /locus_tag="CRE_14144" /product="hypothetical protein" /db_xref="WormBase:CRE14144" /db_xref="WormBase:WBGene00063934" CDS complement(join(288110..288188,288681..288780, 289090..289198,289560..289663,289710..289853, 289967..290081,290634..290757,290992..291113)) /locus_tag="CRE_14144" /note="contains similarity to Brugia malayi Putative uncharacterized protein.; TR:A8PXH1" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07954.1" /db_xref="WormBase:CRE14144" /db_xref="WormBase:WBGene00063934" /translation="MSSPTSTVEKGIRRRLPPPLNRMGLFEPYIKDGKKITEIVRLNP VEVFLAGFIPPMFGSVSAIAIALIFHNDEISNYNWQCGRARLPSLSRIINLPVERTFW QLFLLFHVPIRVVELITGFSRYKRMRNVNYKRVWLYELSRYLYFVVGLLELIFLSGLS IIGERENIQVHVIFFYVFGICGIVHMIANIFCHAHSLYYLNPYGRLSYYLKILFTSLY VLSTPILVASFLLYWRKCITWAYDVFALCEYSGVFLNICFHGCAFFDIRYKVTFSVRK IEDAIQNEPTKQQQVEAIPEKH" gene 288267..288348 /locus_tag="CRE_32606" /db_xref="WormBase:WBGene00187014" tRNA 288267..288348 /locus_tag="CRE_32606" /product="tRNA-Leu" /db_xref="WormBase:CRE32606" /db_xref="WormBase:WBGene00187014" gap 291253..291262 /estimated_length=10 gene <291613..>297092 /locus_tag="CRE_14099" /db_xref="WormBase:WBGene00070570" mRNA join(<291613..291642,291856..292038,292111..292279, 292892..292959,293487..293679,295917..296037, 296900..>297092) /locus_tag="CRE_14099" /product="hypothetical protein" /db_xref="WormBase:CRE14099" /db_xref="WormBase:WBGene00070570" CDS join(291613..291642,291856..292038,292111..292279, 292892..292959,293487..293679,295917..296037, 296900..297092) /locus_tag="CRE_14099" /note="contains similarity to Interpro domain IPR012877 (Protein of unknown function DUF1679, Caenorhabditis species)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07892.1" /db_xref="InterPro:IPR012877" /db_xref="WormBase:CRE14099" /db_xref="WormBase:WBGene00070570" /translation="MERCIVDKTILEVVRDLLKQIAYLHSVSLKHTSWSTLVADLPPS YYAHTIGNFDETMTFFERSDVDHSRFVHIGKYFSDEYLHSTATETTELLEIPKVLVHG EPYASNVFTKMEGKEQRILSLIDWTVDETAMFRAKYYRDHMVDRPTVWVHAPRIAESL QRHLLEIGELPGLLGKKVNRAKTEASESGTDPKEVGSLGRALVQSNVPIIDEKKEGHS GCFAEDVAKIICWNLNAKERVDNTASLLEGYHFHLARYYDGDCPFTVDIIQRCYELFV PFAMVSLCGKVMSVKNKTEKEPLIERAKSLIQQVYAMERLNE" gene complement(<297277..>298912) /locus_tag="CRE_14145" /db_xref="WormBase:WBGene00070569" mRNA complement(join(<297277..297378,298029..298424, 298552..298749,298796..>298912)) /locus_tag="CRE_14145" /product="hypothetical protein" /db_xref="WormBase:CRE14145" /db_xref="WormBase:WBGene00070569" CDS complement(join(297277..297378,298029..298424, 298552..298749,298796..298912)) /locus_tag="CRE_14145" /note="contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain; contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07858.1" /db_xref="InterPro:IPR000535" /db_xref="InterPro:IPR008962" /db_xref="PFAM:PF00635" /db_xref="WormBase:CRE14145" /db_xref="WormBase:WBGene00070569" /translation="MSVVFAFIFLLVNTVVLSTILFQCATAKRSNQHKNKSKKSTRSR KSNRSGKSSRSRKSSRSGRSTASSKSGKSSRSGRSSKSGKSSKSKSVKSYKLKPNPKG QSNKKVQAAILADQKAAKDAINPSLKEVHDLSTSEKQMNQLVTKKEGNSKVSYTNIRV IPHEISFPQIGGLKHVRIKNSSGKRIVYMVKCSDNMMYSINPVYGIIENDKDAQINIL RENGEAKYDKLVIITAVVSHTDKNKTAEQTFASLNDNNSHNYNINVVPLLIQ" gene complement(<299534..>303478) /locus_tag="CRE_14146" /db_xref="WormBase:WBGene00070568" mRNA complement(join(<299534..299612,300095..300194, 300369..300477,300781..300884,300933..301076, 302277..302391,302986..303109,303357..>303478)) /locus_tag="CRE_14146" /product="hypothetical protein" /db_xref="WormBase:CRE14146" /db_xref="WormBase:WBGene00070568" CDS complement(join(299534..299612,300095..300194, 300369..300477,300781..300884,300933..301076, 302277..302391,302986..303109,303357..303478)) /locus_tag="CRE_14146" /note="contains similarity to Brugia malayi Putative uncharacterized protein.; TR:A8PXH1" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07923.1" /db_xref="WormBase:CRE14146" /db_xref="WormBase:WBGene00070568" /translation="MSSATSTVEKGIRRKLPPPLNRMGLFEPYIKDGKKITEIVRLNP VEVFLAGFIPPMFGSVSAIAIALIFHNDEISNYNWQCGRARLPSLSRIINLPVERTFW QLFLLFHVPIRVVELITGFSRYKRMRNVNYKRVWLYELSRYLYFVVGLLELIFLSGLS IIGERENIQVHVIFFYVFGICGIVHMIANIFCHAHSLYYLNPYGRLSYYLKILFTSLY VLSTPILVASFLLYWRKCITWAYDVFALCEYSGVFLNICFHGCAFFDIRYKVTFSVRK IEDAIQNEPTKQQQVEAIPEKH" gene 299691..299772 /locus_tag="CRE_32521" /db_xref="WormBase:WBGene00186929" tRNA 299691..299772 /locus_tag="CRE_32521" /product="tRNA-Leu" /db_xref="WormBase:CRE32521" /db_xref="WormBase:WBGene00186929" gap 309938..310263 /estimated_length=326 gene complement(<313048..>313671) /locus_tag="CRE_14147" /db_xref="WormBase:WBGene00070567" mRNA complement(join(<313048..313143,313501..313559, 313617..>313671)) /locus_tag="CRE_14147" /product="hypothetical protein" /db_xref="WormBase:CRE14147" /db_xref="WormBase:WBGene00070567" CDS complement(join(313048..313143,313501..313559, 313617..313671)) /locus_tag="CRE_14147" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07925.1" /db_xref="WormBase:CRE14147" /db_xref="WormBase:WBGene00070567" /translation="MVTKKTVTELSLFAGLIVSMHVAYYTIQNNPSLVAPHQRQELFY VRWLKEKIPALRPYGVTDEPPKADH" gene complement(<314633..>315672) /locus_tag="CRE_14148" /db_xref="WormBase:WBGene00070566" mRNA complement(join(<314633..315406,315465..315549, 315596..>315672)) /locus_tag="CRE_14148" /product="hypothetical protein" /db_xref="WormBase:CRE14148" /db_xref="WormBase:WBGene00070566" CDS complement(join(314633..315406,315465..315549, 315596..315672)) /locus_tag="CRE_14148" /note="contains similarity to Pfam domain PF01391 Collagen triple helix repeat (20 copies); contains similarity to Interpro domains IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07917.1" /db_xref="InterPro:IPR008160" /db_xref="InterPro:IPR008161" /db_xref="PFAM:PF01391" /db_xref="WormBase:CRE14148" /db_xref="WormBase:WBGene00070566" /translation="MDIKKKLVDSEEDELRKVAFVAIVVSAAAGIMCIILIPGLYTYL QYIQSSVQSDVGFCVDGAKNLENMYQSTKDSDSKLVKRQSGYGSAPNRSSGSRPAPSP YDAATTSSSSSSDSCCSCGIGLAGPQGFPGSPGRDGQDGPAGRPGQDGRDLDGGASDG SEFEIDCPAGPPGAPGNQGPPGSAGRPGMDGVPGRNGRCGRPGEQGERGPNGEDGRPG RRGDDGQPGEVRDVPAPAGPPGLRGAPGGPGPMGPRGNDGRPGNKGPAGPPGDQGFDG APGGPGADGEPGAQGPLGAAGGCSHCPPPRTAPGY" gene complement(<316045..>318028) /locus_tag="CRE_14149" /db_xref="WormBase:WBGene00070565" mRNA complement(join(<316045..316593,316925..>318028)) /locus_tag="CRE_14149" /product="hypothetical protein" /db_xref="WormBase:CRE14149" /db_xref="WormBase:WBGene00070565" CDS complement(join(316045..316593,316925..318028)) /locus_tag="CRE_14149" /note="contains similarity to Pfam domain PF04500 FLYWCH zinc finger domain; contains similarity to Interpro domain IPR007588 (Zinc finger, FLYWCH-type); coded for by the following C. remanei cDNAs: DR407857" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07958.1" /db_xref="InterPro:IPR007588" /db_xref="PFAM:PF04500" /db_xref="WormBase:CRE14149" /db_xref="WormBase:WBGene00070565" /translation="MSTDCSSPSPPATSGLQAPTLPEAPEIQMEVEEASPGASEASPE APTAPATPESPDSSPGSPDEGMDVTEGEPSTSDATAVVPHPGNIDMAEVFRVRFLFSQ NFSVKFDQKLISIFQNNQLALQALITGGTLSDNPTLAISKLFSAVGLLPQVKTEPGAP EPKKARLKVFSNGFFMTFDKISSCKMKHFWRCEYKNTCKARMHTDIESEKIVTYIHDH NHTPPTPEEVRLYGIDPTSVERNRVYIVGNVADTNARRKIRKQVADREAAAKRLEEQK KAELQKQQNEATIKAAQEAYARAISSGAISGGAISQRSPMAAAASLLQSASTATAPIN PHALLLAQLPYLNQGMARNEIPGMHNPAFMASNMSMPSSSPPVPPPNVYSSPLVIQSE VADAPAAAPVSNQPSTSNRPLDPMMPDPDMLAHPLFEPTFQIARQLRKMWSGVPKRYP RPADTPTDHFDFYVAKYDGGLEHLYNLIRLERRDEAHMKNALERFFNEEFVGPLLFKV SPKICIAFNKPMLDTWENNQFFLVDTRIPSCWKMMYVDDQCD" gene complement(<320514..>321678) /locus_tag="CRE_14150" /db_xref="WormBase:WBGene00070564" mRNA complement(join(<320514..321236,321373..>321678)) /locus_tag="CRE_14150" /product="hypothetical protein" /db_xref="WormBase:CRE14150" /db_xref="WormBase:WBGene00070564" CDS complement(join(320514..321236,321373..321678)) /locus_tag="CRE_14150" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07949.1" /db_xref="WormBase:CRE14150" /db_xref="WormBase:WBGene00070564" /translation="MSRRSARLHEQDAFARETERQRELDQDIARLSPFFQRMLPGPGT STPRSQRNRDRMMRAPRSEPSPIERERNQYIRHVFRTETLRRSPRRLMVPPVTPVRGR NSMIQTLYPMDPPSPTESEENTPTQSRQNSPSPPRSPVPEPREIHLIPPPNSPESGIP KRWERLAEDNINMGFGFALSWINTIKFSRLEAEERIILPRIYRRVPRKSLMCLLAHMN VDETVFHHVEVKMKSEVGETKSLKWNKIQRKVFFQMNMRKTFAEFVKLPIPFHRLRLK VDKYAEVPINQGIADKFEPVEYFRLDTKLPNLWILHQIVNHGPKVEEYKKPLPPNFEK AKKGREDF" gene <331712..>333288 /locus_tag="CRE_14100" /db_xref="WormBase:WBGene00070563" mRNA join(<331712..332005,332060..332401,332640..333044, 333091..>333288) /locus_tag="CRE_14100" /product="hypothetical protein" /db_xref="WormBase:CRE14100" /db_xref="WormBase:WBGene00070563" CDS join(331712..332005,332060..332401,332640..333044, 333091..333288) /locus_tag="CRE_14100" /note="contains similarity to Pfam domain PF04500 FLYWCH zinc finger domain; contains similarity to Interpro domain IPR007588 (Zinc finger, FLYWCH-type); coded for by the following C. remanei cDNAs: DY527150" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07897.1" /db_xref="InterPro:IPR007588" /db_xref="PFAM:PF04500" /db_xref="WormBase:CRE14100" /db_xref="WormBase:WBGene00070563" /translation="MDVAVPSSPAANLEWAKHFVAKMSNEQRQLLQQMFIADQEKKKK AREEELAKQQQAILDSLTRQIPITVDVVRATTPPESQASSSSSVVSCYGEEEHITVKD AVMGKLKNASRCVPSGSPKPYRPRTTRERVLFDSHLYVFDKCSYDSKKKFYRCEKKNT CPARLHTPFDSPRVIHKVQVHNHPPPATHDLSHWDIDYGKMRSGFIYLLVPKQSQGQA PSRANQMPHSLLLTPKSDFDGDRSEKSVTPTPMDFLTKLANQLDDKKVVSVKLPAKFS NLNQSEVFEIELALTKFLLSQHDLRNEFINYLTNIPTFFPNAPKNELILFVADFSVPD APFHMLTVKERNEKSIRAAIMQHLKQVSTRALMVNVCARINVPLSQQMIDEWKTEEFI RLDFSKPNAWKVHRITKLHE" gene <334114..>335176 /locus_tag="CRE_14101" /db_xref="WormBase:WBGene00070562" mRNA join(<334114..334236,334280..>335176) /locus_tag="CRE_14101" /product="hypothetical protein" /db_xref="WormBase:CRE14101" /db_xref="WormBase:WBGene00070562" CDS join(334114..334236,334280..335176) /locus_tag="CRE_14101" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07927.1" /db_xref="WormBase:CRE14101" /db_xref="WormBase:WBGene00070562" /translation="MNEKNTNCSCNRYGKKPLTKEEEQAMMVFMSIFFGIILLMIVFL VIIYIFHYIRSWKFHKVTKIPKQPNWLMRIEVSALTKREQKYFTIYTKRYSPVYGKLY PDAVKKLREVLGNHFKFTIDSDVIPDLTCIISVPKRNFKCGRIPGEFIPKHGESPGCY FEYQMIGDDRIQVTWFMVEGKKYVAGICIYMKNPEQFHYMYREQIIEQLLKEPDYWST YGLKEETMKVLIRKDNEEWNLFTNNRYGEERCFRFISEKRQLDTYRPFDSKHYGKKKS TEDAGDLTVHVCKSRNEMVMIGMRDGERMHATWNKKHQQMEYYRCASCAELNYTPPPT YQSLY" gene <335594..>336651 /locus_tag="CRE_14102" /db_xref="WormBase:WBGene00070561" mRNA join(<335594..335701,335752..>336651) /locus_tag="CRE_14102" /product="hypothetical protein" /db_xref="WormBase:CRE14102" /db_xref="WormBase:WBGene00070561" CDS join(335594..335701,335752..336651) /locus_tag="CRE_14102" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07885.1" /db_xref="WormBase:CRE14102" /db_xref="WormBase:WBGene00070561" /translation="MSSNCNCSRVRATNEHTNQEKGEAMLAMMGITLLFFIIFIIIVI VLYIRSWKFHENTKFPKQPNWMLKLDSIFSIKKQDRFTIYTKYYEKRYCEKTRAEQPK KMMKTIRTLLQTYLQVPVTIPDSTCIVSIPKRNFKCGAVPGEFIPKHGEPPACYYEYQ MIGDDRIQVAWFVVAGVRYVAGVCIYLETPYVGRIRYREEIILDLLQKPDYWPTFTLK EETMQVLIRKCKNELTLFTNNRYNEPCCFRFVSDKRKFVTGQALALDNYKRIKSAVHT HHIPIQVCPHGNELALIRINNGTRMHATWNRKCRHTEYSICASCAELNETPPPTYQSL Y" gap 337635..337754 /estimated_length=120 gene <338231..>339073 /locus_tag="CRE_14103" /db_xref="WormBase:WBGene00070560" mRNA <338231..>339073 /locus_tag="CRE_14103" /product="hypothetical protein" /db_xref="WormBase:CRE14103" /db_xref="WormBase:WBGene00070560" CDS 338231..339073 /locus_tag="CRE_14103" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07914.1" /db_xref="WormBase:CRE14103" /db_xref="WormBase:WBGene00070560" /translation="MKMNCFTIYTKSYEKRYCEKSREEQRKKMIEIVRTLLQTYLQVS VAIPDSTCIVSIPKGNFKCGAVPGEFIPKHGEPPACYYEYQMIGDDRIQVAWFVLAGV RYVAGVCIYLETPYESRIRYRYDIILDLLYKADYWSTVSLKEETMQVLIRKKNNELTL FTNNRYGEPSCFRFDSDKRKFVTCQASSLDNYKRIKSTVHTHHLTIQVCQHQNKLALT AINNGTRMHATWNRKYRQIEYSRCASCAEVYDTQLPTYQSLLHHNSYYYNYFNDFFYQ NMCY" gene complement(<339207..>339711) /locus_tag="CRE_14151" /db_xref="WormBase:WBGene00070559" mRNA complement(join(<339207..339338,339468..339602, 339655..>339711)) /locus_tag="CRE_14151" /product="hypothetical protein" /db_xref="WormBase:CRE14151" /db_xref="WormBase:WBGene00070559" CDS complement(join(339207..339338,339468..339602, 339655..339711)) /locus_tag="CRE_14151" /note="contains similarity to Pfam domain PF00428 60s Acidic ribosomal protein; contains similarity to Interpro domains IPR001813 (Ribosomal protein 60S), IPR001859 (Ribosomal protein P2)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07903.1" /db_xref="InterPro:IPR001813" /db_xref="InterPro:IPR001859" /db_xref="PFAM:PF00428" /db_xref="WormBase:CRE14151" /db_xref="WormBase:WBGene00070559" /translation="MRYTSAYLLAALGGNSDPKADDLKKILSSVGIDADAEKVDSVVA ALKGKNLKEVITEGKAKIASVPSGGAPAASSAAPAAAAADTKAAKKEEPKEESDDDMG FGLFD" gene <340293..>340791 /locus_tag="CRE_14104" /db_xref="WormBase:WBGene00070558" mRNA join(<340293..340349,340400..340534,340660..>340791) /locus_tag="CRE_14104" /product="hypothetical protein" /db_xref="WormBase:CRE14104" /db_xref="WormBase:WBGene00070558" CDS join(340293..340349,340400..340534,340660..340791) /locus_tag="CRE_14104" /note="contains similarity to Pfam domain PF00428 60s Acidic ribosomal protein; contains similarity to Interpro domain IPR001813 (Ribosomal protein 60S)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07929.1" /db_xref="InterPro:IPR001813" /db_xref="PFAM:PF00428" /db_xref="WormBase:CRE14104" /db_xref="WormBase:WBGene00070558" /translation="MRYISAYLLASLGGNSDPKADDLKKILSSVGIDSDVENINNVVA SLQGKNMEEIFAEGMTRIASVPSGRAPAASSAAPAAAAADTKAAKKEEPKEESDDDMG FGLFD" gene complement(<341087..>356416) /locus_tag="CRE_14152" /db_xref="WormBase:WBGene00070557" mRNA complement(join(<341087..341148,341216..341720, 342055..342139,342300..342805,344055..344198, 344251..344341,344391..344536,344613..344699, 344859..344972,345960..346034,346571..347132, 347312..347436,347909..347976,348115..348406, 348667..348896,349643..349748,349836..349954, 351295..351739,351908..352076,352462..352640, 352734..352868,355219..355378,356373..>356416)) /locus_tag="CRE_14152" /product="hypothetical protein" /db_xref="WormBase:CRE14152" /db_xref="WormBase:WBGene00070557" CDS complement(join(341087..341148,341216..341720, 342055..342139,342300..342805,344055..344198, 344251..344341,344391..344536,344613..344699, 344859..344972,345960..346034,346571..347132, 347312..347436,347909..347976,348115..348406, 348667..348896,349643..349748,349836..349954, 351295..351739,351908..352076,352462..352640, 352734..352868,355219..355378,356373..356416)) /locus_tag="CRE_14152" /note="contains similarity to Pfam domain PF00063 Myosin head (motor domain); contains similarity to Interpro domain IPR001609 (Myosin head, motor region)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07880.1" /db_xref="InterPro:IPR001609" /db_xref="PFAM:PF00063" /db_xref="WormBase:CRE14152" /db_xref="WormBase:WBGene00070557" /translation="MDSASGIDLDPNVLRHLQTKKVEERIEDLNNQIWMEDDAVGYRL VTVIDEGLSDLLVGFRDEQGFFEKKRIEKAKCEVPSLNNYSDDLCTLTQPNAATVLHA LNIRYTSNVIHTYCGLFCVVINPWRTIPIYSDEVKQLYQHRNDLPPHVYSVAQNAFHG ILKGGRNQSILITGESGAGKTENTKKIIDFILSSSGSNNTIGECVVTSGVLLEAMGNA RTTHNSNSSRFGKFIRIEFDENSKLIGAKIECCKPLFLPIHPHLKFSDLLEKSRVVSQ SDGDRNFHIFYQMLSNYFDNPHKSFLKLSKKVEQYKYLRNDDASIDDAETAKLTDEAF SKIGFSEEEKIWIFQILSAVLWIGDIKFGERSGLDVSFVESMQEVDNIAELLEMKSSK LVDALTQPTIKVHDKLIRKNQNLAKTLSSASAMAKVLYERLFGWVVKRCNDAFSVDDT KNSCRNSRFIAVLDIAGFEIIEKNSFEQFCINYTNEKLQQFFNHFMFVKEQSDYLEEG IKWAQVNFANQLQPTIDLIEKPMGVLSFLEEECVVPNGSEKSLLEKLCSNLAGDSSFK KSKQSQKYSTVRHFAVQHYAGEVHYNIDGWLEKNRDNVETSVLDILSQSTHPLLKVLF PPVPANNLKARRGTITNSTVSFLYKNQLQCLLDTLNTSSAHFIRCVVPNYEKLPGKID APLVLSQLKCNGVLEGIRICREGYPSRLPHSEFIERYSLLLKNKEKVSGASEKEKCAH ICQDADVRKERYAVGKTKLFCKVGVISELERKRNEYISSFIVLIQANIRYLNVQADLL ERRRKAEAIVTIQENVRQFAQLSQWPWYRIHHLARGLIPKNRDKERIQELEMEKMKLE EEIQEMEVKNEEALKENLKLSMLLDREKTEKIKVQKEMEEVEKRGREKLLEKEREFRK TMEEMEQNEEIFSVLEKKYNDQHKKVMKMNDVLRDYERRIEQLNMEKSDLEAENLKLK EAQNRQDSHYGNMEKELMEKTSMIDELQNQVQKLLDETNEQKITIAKLETALEDEKAR HSRQNNTIGDMQKLITELNEKIARLDNVALNERNSTRKIEREKEKLNEELTTAKEIIQ KQAKKIDELKDECRKRGNEVNRLERKLEDKEAMMADCVKELKDSHKERLKEMEQKVED VKRKNSKLENENSTQKSQIETFQRESSVDSDYGRSSSGRLSTLGRQYSLTSIGSFSSI RTVGLSRKDSVSDMTSSMYSLRGRRDSTYDMTSSISNSVGLQRSPSTSQVMEKERRIL ELEKEKAAINTELQLVKRELDVYKSQLSAVESEKESLQTTLRKQTNQLQETTRQFNSA QKNADNLALRLKKALADCDEWKKKHEESINESKTEILAERKRAMDRAEASEKETELKQ SRMATIESAKSALSGELARTQAELDRCRQIIVQLEENIKSQETLGNSFERHQSNLNFE IENLRDENCALKAKIRRQYKQIELLTQQDETNDELNHFENKTERLL" gene complement(<357872..>359516) /locus_tag="CRE_14153" /db_xref="WormBase:WBGene00070556" mRNA complement(join(<357872..358061,358280..358380, 359445..>359516)) /locus_tag="CRE_14153" /product="hypothetical protein" /db_xref="WormBase:CRE14153" /db_xref="WormBase:WBGene00070556" CDS complement(join(357872..358061,358280..358380, 359445..359516)) /locus_tag="CRE_14153" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07935.1" /db_xref="WormBase:CRE14153" /db_xref="WormBase:WBGene00070556" /translation="MRILLVLFPFLARFSDTCAPTRATTPIVCACSTSEVALLYRIDG SDGGAEAIQPVGEVTTSDANNCPTEYTITCTLPEGSTGTVMMMFQDSVSGGLQQNTIP LACTDGNWLYLDETNGQT" gene <363124..>367514 /gene="Cre-ceh-53" /locus_tag="CRE_14105" /db_xref="WormBase:WBGene00070555" mRNA join(<363124..363136,364821..365014,365254..365395, 367052..367197,367443..>367514) /gene="Cre-ceh-53" /locus_tag="CRE_14105" /product="CRE-CEH-53 protein" /db_xref="WormBase:WBGene00070555" CDS join(363124..363136,364821..365014,365254..365395, 367052..367197,367443..367514) /gene="Cre-ceh-53" /locus_tag="CRE_14105" /note="contains similarity to Pfam domain PF00046 Homeobox domain; contains similarity to Interpro domains IPR012287 (Homeodomain-related), IPR001356 (Homeobox); coded for by the following C. remanei cDNAs: DQ115342" /codon_start=1 /product="CRE-CEH-53 protein" /protein_id="EFP07867.1" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR012287" /db_xref="PFAM:PF00046" /db_xref="WormBase:CRE14105" /db_xref="WormBase:WBGene00070555" /translation="MIMKECSSSPPQPLSSVPLEERRVRRLRTAFSENQLEMLEDAFL KCQYPDIQQREALGKRIELAEARIQVWFKNRRAKARKRQRNESSDGSPTDDGNEDESD GMNKKKIKEEATIITWTPGAALFNSSISPTTTSIQNSSLPTPQLNFICHQNPFYAYQY QNFNTIPTHLITTANDKMGLVVEKKNIG" gene complement(<369411..>370051) /locus_tag="CRE_14154" /db_xref="WormBase:WBGene00084900" mRNA complement(join(<369411..369820,369898..>370051)) /locus_tag="CRE_14154" /product="hypothetical protein" /db_xref="WormBase:CRE14154" /db_xref="WormBase:WBGene00084900" CDS complement(join(369411..369820,369898..370051)) /locus_tag="CRE_14154" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07928.1" /db_xref="WormBase:CRE14154" /db_xref="WormBase:WBGene00084900" /translation="MAPIVHAYNQRIEMIRRIHYQNWMLKKTSQKDKSVGSDRSKLGK MIGASDIGNPDARVLLSNMCMSVTADSLRILFSDFNVKTLTINHDKNGNPVGTGIVVL PKKDAIRLIRQFTDVVIGSSDIQFKLIAASNIDKRVWFADKKDENEPAKRNPLKQHEK ARGFLKKMNTNNLNPNVLVSTFSNLSI" gene complement(<370968..>371588) /locus_tag="CRE_14155" /db_xref="WormBase:WBGene00084908" mRNA complement(join(<370968..371377,371459..>371588)) /locus_tag="CRE_14155" /product="hypothetical protein" /db_xref="WormBase:CRE14155" /db_xref="WormBase:WBGene00084908" CDS complement(join(370968..371377,371459..371588)) /locus_tag="CRE_14155" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07963.1" /db_xref="WormBase:CRE14155" /db_xref="WormBase:WBGene00084908" /translation="MAPSSEIHAQLTERARRLNQDWKQKRVPQKGRRLGSIKQNSDLG HSDVRIAISNMCPSLTPNCLLNIFGEFKLKTISLDSDEQGKPVGTGRIVLCKDESLRL IQRFTGKLIGSKEMSFKIIAISNIEKHVRFAERLNEKESSKRIPSKQHEKTRGFLKKM ENHNLNPNALVSTFSNLSI" gap 373040..379438 /estimated_length=6399 gene <381585..>387840 /gene="Cre-unc-33" /locus_tag="CRE_14106" /db_xref="WormBase:WBGene00074792" mRNA join(<381585..381625,381771..381940,381998..382194, 382241..382330,382907..383290,384220..384560, 386194..387499,387646..>387840) /gene="Cre-unc-33" /locus_tag="CRE_14106" /product="CRE-UNC-33 protein" /db_xref="WormBase:WBGene00074792" CDS join(381585..381625,381771..381940,381998..382194, 382241..382330,382907..383290,384220..384560, 386194..387499,387646..387840) /gene="Cre-unc-33" /locus_tag="CRE_14106" /note="contains similarity to Pfam domain PF01979 Amidohydrolase family; contains similarity to Interpro domains IPR005847 (Dihydroorotase region), IPR006680 (Amidohydrolase 1); coded for by the following C. remanei cDNAs: DY528487" /codon_start=1 /product="CRE-UNC-33 protein" /protein_id="EFP07904.1" /db_xref="InterPro:IPR005847" /db_xref="InterPro:IPR006680" /db_xref="PFAM:PF01979" /db_xref="WormBase:CRE14106" /db_xref="WormBase:WBGene00074792" /translation="MLPFLAPIRSANHVSQQGTKYYVEMTFLADSPYSTRSPSTTADQ QPQPVIPTLRNLDEVETVSNKSRSSEGLNKLGGSRPNSRTSLNTAIKKTSVSSLPTSA RSEGKSSPVPVKDIVTPAPTRHKNKGLEMSSAMMELFGGGSTSPAPSKRENVGSVYQK VENHDAAYDRAVNRGRGANLSQPGPEWYEGFDRMDMTNIGIFKMTFILFSVKISFLEL PPDPNCPAERVLRGDDKSTPDFDSDWQEAKEDVLQTTSSSGSLRKFYPTESLPGPDIG VGVEDEEEEEEVVEQGEEQLQYESKVGDINKDDEDSGSSSSKKGHPSASENNDGRGST ESGENSSSRRDSVSGEETSNGQSAAAQSTNDEKKEKSAGGDGGEMSVLLLKGAQIVND DAVFEADVWIQNGIILNICPNLEPPEGARIIDATGKYILPGGIDSYTQATDSTIDDIA TACKSAVAGGTTTIIELVRPRGSESILAAVRRVKADVEKAAMCNVSLSAAITDFNATV QRDMYEIVKEEKVNSFVLDGVSLPDDKLYELFDHVKKLGALIRIIPENKAIISILEKK MLKMGITGPEGYPQSRPESLEADQVSGVCVLSNLANCPISIVQVSSGDTLAAIEKARG DGAMVYAEIASAAITADGSAYLNEDLKVASAHMTDVPLRRGVLERMLGALSTQPMVTC TSGHRPVNSVTRNAAKDFTVAQKGTAGAEERMAIVFEQAVQSGRIDEMRFVAVTSTNA AKMVNLYPKKGRIGVGADADLVIWDPNGKRVLESTRSQSNQVSSMYDGITLHSSIHTV IVNGVIAYQNGEIRVESGGGYLPIDGNCPYLYANVRKRDKVSNINFSSTQKVEREQSK PQAPQQNGQTHKNSGEFDRNRTKVMESSIDFGGSSSNRGRNPPGGRTTGFW" gene 387526..387598 /locus_tag="CRE_32554" /db_xref="WormBase:WBGene00186962" tRNA 387526..387598 /locus_tag="CRE_32554" /product="tRNA-Arg" /db_xref="WormBase:CRE32554" /db_xref="WormBase:WBGene00186962" gene <388566..>391566 /locus_tag="CRE_14107" /db_xref="WormBase:WBGene00070550" mRNA join(<388566..388916,388977..389095,389143..389280, 389314..389492,390089..390231,390278..390891, 391362..>391566) /locus_tag="CRE_14107" /product="hypothetical protein" /db_xref="WormBase:CRE14107" /db_xref="WormBase:WBGene00070550" CDS join(388566..388916,388977..389095,389143..389280, 389314..389492,390089..390231,390278..390891, 391362..391566) /locus_tag="CRE_14107" /note="contains similarity to Pfam domain PF01239 Protein prenyltransferase alpha subunit repeat; contains similarity to Interpro domains IPR002088 (Protein prenyltransferase, alpha subunit), IPR008940 (Protein prenyltransferase)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07899.1" /db_xref="InterPro:IPR002088" /db_xref="InterPro:IPR008940" /db_xref="PFAM:PF01239" /db_xref="WormBase:CRE14107" /db_xref="WormBase:WBGene00070550" /translation="MHFVKKVPTTEQEKAAKAKEHAKRSQQFLHVRDRIFAKRDKGEY DDELLSLTQGVLEKNADIYTFWNIRRTTIEQRIEANDKIQKDSEASDEEKTKSAQKIE NLLAGELFLSYECIKSNPKSYSAWYQRAWVLQRQTSPDYAKELALCEKALQMDCRNFH CWDHRRIVARLANRTEQQELEFSNRLIDENFSNYSAWHYRYQKSIALQNIHRDAATGM TKIDDALIGSELQKVKNAFYMDAEDQSAWTYTRWLLEVGSGKEFLRPESSSPIELISA SFHGNNTTLVFSRAVTIPFLLTFVDTEDTTRWRAFSSTSPNPSSSRVWQYLSDSPLRV VTSQSTDENVTWNELTDDRYVNKSRLETIYDIVEAKEPEYIKELLEDCHQLIQLEPKN KWPLYMRTLVLLEYQPIRSHDEIISNLKNLAENLDSKRAELYKSLLSRQKLNHSIREQ FERLIGKEHDQLVVRYAELTSLEGVEFLAGLVGNADFQGNLLTEIHRIVLPNLHNLTI SENPIERLSPTPSLSHLTFLSIAGTQISEVSSVMPFFQTTPSLDRLIFCETPLVEKTE ELRAQLPGVRLIPHWL" gene complement(<391787..>402336) /locus_tag="CRE_14156" /db_xref="WormBase:WBGene00070549" mRNA complement(join(<391787..392034,392081..392215, 392269..392400,392446..392539,392583..392705, 392749..392887,399701..399798,399842..399937, 402262..>402336)) /locus_tag="CRE_14156" /product="hypothetical protein" /db_xref="WormBase:CRE14156" /db_xref="WormBase:WBGene00070549" CDS complement(join(391787..392034,392081..392215, 392269..392400,392446..392539,392583..392705, 392749..392887,399701..399798,399842..399937, 402262..402336)) /locus_tag="CRE_14156" /note="contains similarity to Pfam domain PF04142 Nucleotide-sugar transporter; contains similarity to Interpro domains IPR004689 (UDP-galactose transporter), IPR007271 (Nucleotide-sugar transporter)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07933.1" /db_xref="InterPro:IPR004689" /db_xref="InterPro:IPR007271" /db_xref="PFAM:PF04142" /db_xref="WormBase:CRE14156" /db_xref="WormBase:WBGene00070549" /translation="MTGITRQTMPHGIEIDRQNDQSSNPIIRVICSVQLLSMIAVTAH STAMPFLVRIANKTHFFPTTSVFMMEVLKLIFCLVITLFKTGSVKSTAQELHKTIWKN RLETLKVAVPAVVYAIQNNLYYIALANIDPTTYSVTLQLRILTTALLSVCLLNKKLSW YQWGAQVMALLGVVIVQLDKSNAHKEAVGSFWIGVGAVIGMCWTSAFAGVYFEKMLKN SLADVWIQNIRLSILTLFFAGITMMTTDGEAVIQGRMFEGWSQMVWLVTVLNSIGGLC ISLVMKYADNVMKTYCQSIAIGLTSLVSIFLGERLLTLYLVYGVLMVTSSVVVYSLFP ASPPSLPYHKLEQQEDVEELLKSSEEDEEDEIFGENERKVAELSI" gene complement(<406639..>413792) /gene="Cre-osm-9" /locus_tag="CRE_14157" /db_xref="WormBase:WBGene00070548" mRNA complement(join(<406639..406827,407062..407286, 407494..407832,408752..409003,409182..409336, 409589..409850,410578..410688,410739..410861, 410907..411022,411349..411574,411912..412219, 412315..412406,412488..412618,412783..412931, 413651..>413792)) /gene="Cre-osm-9" /locus_tag="CRE_14157" /product="CRE-OSM-9 protein" /db_xref="WormBase:WBGene00070548" CDS complement(join(406639..406827,407062..407286, 407494..407832,408752..409003,409182..409336, 409589..409850,410578..410688,410739..410861, 410907..411022,411349..411574,411912..412219, 412315..412406,412488..412618,412783..412931, 413651..413792)) /gene="Cre-osm-9" /locus_tag="CRE_14157" /note="contains similarity to Pfam domains PF00520 (Ion transport protein), PF00023 (Ankyrin repeat) (4)contains similarity to Interpro domains IPR005821 (Ion transport), IPR004729 (Transient receptor potential channel), IPR002110 (Ankyrin)" /codon_start=1 /product="CRE-OSM-9 protein" /protein_id="EFP07876.1" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR004729" /db_xref="InterPro:IPR005821" /db_xref="PFAM:PF00023" /db_xref="PFAM:PF00520" /db_xref="WormBase:CRE14157" /db_xref="WormBase:WBGene00070548" /translation="MGGGSSRNKTEPRGEGVKLAFDPDEKWSNLYREREKNHLYKWVG VRKGGELINIYERDGEEGVLKFAEEKLLTILYEDGNTPKLVTYSDYIKWKKGVNVQLG LSEESVDMQQSRFKEHYALWKLNKRGVEGENLIHLLLNREQQVCYEIARILLKRFPGM ANDIYLGDEQFGQSALHLAIVHDDYETVSLLLNNKADVNARACGNFFLPEDYKLTNKI TDYQGYAYYGEYPLAFAACFGNKDIYDLLIQFGANPNLQDSFGNTILHMCVINYSSSM YSYAVRHWAKPADPHVVNHAGFTPLTLATKLGRKHIFEEMLEIMKVEFWRFSDMTCSA YPLNTLDTIQPDGSTNYDSALMTVINGSTPEHLDMIGSEVIQRLLADKWKAFAQRKLI ERLVLLIFQLITLSIVVYIRPTELPRLYMEEPQWDDWVRTVCEILTIGNCVFFVGYQQ FGEIRTQGMRGYLRNLKTAPAKAVFCIANLFLLLCIPFRLLRKHEIEEALFVFALPGS WIFLLFFARSAKLTGPFVQMIYSMIAGDMIRFAIISAIFLVSFSQVFYFVGKDMDAKQ KLEDTNPHACRISGYTIYTYNTFPETFITLFRASMGGYDYEEFSCANYQALTKTLFVL YMFVMPIMMINILIAMMGNTYTTVIAQAEKAWRQQYAQIVMVLERSVGKERLAASQLE YSIRLDQEGSSGMEVRGLMVIKQTKKTRARQRKQAIYNWKTIGRKVIHTIDKVGTEQA ILLLHGHDRLDRVYEDHVQPEKVPSRSRTPTRIGTTLHSSKRLKTTMVVGAAAAAAAS NTHEIRTDEAVNSMLLSAPPSLSGEGGTMDWQPSITPVEERSESKSQGRSEASSPIVV IPPVHSKTPPKADSPVKVQEYSRTVRVRGADSIPSIELPNIPNKSTASTPPHRAVSPR LRADMFRRHPNTSSFDQNPPAPPSE" gene complement(407340..407411) /locus_tag="CRE_32548" /db_xref="WormBase:WBGene00186956" tRNA complement(407340..407411) /locus_tag="CRE_32548" /product="tRNA-Pro" /db_xref="WormBase:CRE32548" /db_xref="WormBase:WBGene00186956" gene <419519..>421067 /locus_tag="CRE_14108" /db_xref="WormBase:WBGene00074096" mRNA join(<419519..419848,419951..420127,420231..420381, 420428..420533,421019..>421067) /locus_tag="CRE_14108" /product="hypothetical protein" /db_xref="WormBase:CRE14108" /db_xref="WormBase:WBGene00074096" CDS join(419519..419848,419951..420127,420231..420381, 420428..420533,421019..421067) /locus_tag="CRE_14108" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07913.1" /db_xref="WormBase:CRE14108" /db_xref="WormBase:WBGene00074096" /translation="MLDHFPRCIKHGLFSLLLPLFRCSVYFDKMKKDKTSEIIYLKNN FLPRYLFVLVASGLICLIRYTSIIRYGYEKESQESSRLIMRAGLLSLVICTSFGYFSC WYCDYNFMDGMYYVSLFHFVATATLLPILLEYSYMCKFTRNIYCDQNFMLLTGVLAGC GRAVYTHNIAEMYHGAYIYFIGMFVIDSCALFGKPTKVVFLRGLVGKYVICQIGLKVR QGYLKSLLSGDELNLELIYSQRVFNGKVRKRLMIIRLYNVDSVKERCKLVHS" gene complement(<427526..>430218) /locus_tag="CRE_14158" /db_xref="WormBase:WBGene00070547" mRNA complement(join(<427526..427629,427676..427867, 427911..428040,428082..428253,428298..428419, 428466..428663,428706..428816,428858..428962, 429012..429081,429127..429260,429303..429422, 429473..429664,429716..429838,429888..430028, 430075..>430218)) /locus_tag="CRE_14158" /product="hypothetical protein" /db_xref="WormBase:CRE14158" /db_xref="WormBase:WBGene00070547" CDS complement(join(427526..427629,427676..427867, 427911..428040,428082..428253,428298..428419, 428466..428663,428706..428816,428858..428962, 429012..429081,429127..429260,429303..429422, 429473..429664,429716..429838,429888..430028, 430075..430218)) /locus_tag="CRE_14158" /note="contains similarity to Pfam domain PF02195 ParB-like nuclease domain; contains similarity to Interpro domain IPR003115 (ParB-like nuclease)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07932.1" /db_xref="InterPro:IPR003115" /db_xref="PFAM:PF02195" /db_xref="WormBase:CRE14158" /db_xref="WormBase:WBGene00070547" /translation="MYLQITKNETNVLLRTTVERFRCHRRILEGTHLIICHKLISGCN KNRKIDIDEVSSPINFYYDDNQDLFLTDFDEEEKVLELPIHLIAIGEEVVKIYFQGYL LNIQKSCMHKSVLNVDFYLKRSSRMQEVEEPRKKKARYVESQRPTESEISEELGIYTD SDSMLSITSDISQSYSNSPIETDTQQSDLSLDNPTPIRKVMPIPKSKLDSKTQHDLLK DDVKDKLNQLFARFRFPGKEQLIAPEALESTKNDCSSDKIFQEMVKEIKNTLGLGEEN PIVVTEINGGRNMKVLSGHRRVQAYKTAGLNNIRVTVINPEEEADFSLYHFFSSTFKG RAEPHHYDYIHFFNQLFLHLKILKSDLKTWTVQDIREVFSQFLGQNDRVTLFIEICQF DELADALLELRSFVKPLSVACLMNILRRFKINPRSTLEVLNSAQPDMTESALRKTISV IQPDARHLLCKKGCPSSDAEELLTLFGRNPNFPHFVRGMDVRSNNKTLGLEFIKMRFE SYLKKSAHKSAEALHKPYIYISEDNSNCDLFITDHEDSIKPYLDSTEEGVALLIGKHS IGATHHTIVLNDESSWKDEEGVLQNHYSLSLWCKSNGMFKTGRSLSDVFIKNGSQRKT IMSARDVRSIIRKGSIGFLNSTSSTTTNIASELLCTCQLILVPNEEIRHLLHESLSKN PSI" gene <430911..>432771 /locus_tag="CRE_14109" /db_xref="WormBase:WBGene00070546" mRNA join(<430911..431072,431233..431354,431397..431730, 431771..431887,431933..432038,432086..432235, 432276..432364,432413..432572,432620..>432771) /locus_tag="CRE_14109" /product="hypothetical protein" /db_xref="WormBase:CRE14109" /db_xref="WormBase:WBGene00070546" CDS join(430911..431072,431233..431354,431397..431730, 431771..431887,431933..432038,432086..432235, 432276..432364,432413..432572,432620..432771) /locus_tag="CRE_14109" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07862.1" /db_xref="WormBase:CRE14109" /db_xref="WormBase:WBGene00070546" /translation="MDSFADPSLSKYKRRPWYQKTVDIVSDAMKVMSEHVQFNSLNQV MVSPSISSQLNDTLVRCDSCFGLKEILERSHSDIERREAKRKLDQHYDYISRQRVIIQ TLCAQSRDPNCDVRVVMIDGMSNRHTKLPRLVDRPKFVTDSIRVIMSLTTVQIARSEG KKIECATHNTFSGANSFTNFDYPSIEKTYSHDSSYTLSLFLNAISKLSTIPSVFVLLL DSAAMNKSYMLLGGLGVILSKISKLQKIYIVYPCKGHTHLSVDGHFGTLSQSLRSKNL LDPKDMTVFLEQSPSVAEVITTPTVYEFSEVQQHISKVGNLFSNAQFCLSKDETGDIY WSSAATLHSSLLFNAENDQNAFKLFKEAFLPEEFVPTIRKPETTIIENKVNELKRQCG ELLTDQNHQNFCSYIVEYGKKSFRHTMTDINQKRQLVPSPATSPDDPHQTVLQFLKRN GYPTGKMPKNPSI" gene complement(<433401..>434828) /locus_tag="CRE_14159" /db_xref="WormBase:WBGene00084895" mRNA complement(join(<433401..433502,433550..433623, 434744..>434828)) /locus_tag="CRE_14159" /product="hypothetical protein" /db_xref="WormBase:CRE14159" /db_xref="WormBase:WBGene00084895" CDS complement(join(433401..433502,433550..433623, 434744..434828)) /locus_tag="CRE_14159" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07915.1" /db_xref="WormBase:CRE14159" /db_xref="WormBase:WBGene00084895" /translation="MDKNSVVHVFLKRFIESLPNPRTIKAKGERSDNATQRHEPVVKT FVRHPMGVEFKGTYRTMKAVLGAKKDKTIGMKKRGISGGTIN" gene <439154..>440498 /locus_tag="CRE_14110" /db_xref="WormBase:WBGene00070545" mRNA join(<439154..439259,439315..439681,439725..439864, 439908..439993,440047..440183,440228..>440498) /locus_tag="CRE_14110" /product="hypothetical protein" /db_xref="WormBase:CRE14110" /db_xref="WormBase:WBGene00070545" CDS join(439154..439259,439315..439681,439725..439864, 439908..439993,440047..440183,440228..440498) /locus_tag="CRE_14110" /note="contains similarity to Pfam domain PF00201 UDP-glucoronosyl and UDP-glucosyl transferase; contains similarity to Interpro domain IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07964.1" /db_xref="InterPro:IPR002213" /db_xref="PFAM:PF00201" /db_xref="WormBase:CRE14110" /db_xref="WormBase:WBGene00070545" /translation="MDYLEIKAFALAHTVAFEASSMRVLGESVMPSHVPDLLTPSSDR MSLYERLLNSAIQTLHSYYRLTPEYYTSYSNPEERIYPLERLPDASFVFTNSNPYLDF PRATIAKNIQIGGISVSMETRKLGEEWDQILNLRNKNFLIAFGSVILSKDMPFESKVS LARAMKQFPDVKFIWKYEDSDTDKFAEGIQNIHFTKWVPQRELLADARLSAFMTHGGL GSVNEVSYMGKSSIMCPIMGDQMRNTKMLVRHNGSIEISKYDLGNSELVEKVIRKILY DESYKIAAQLLSDHLMNQPVSPKDLFLKHTEFAARFGKLPSLDPYSRQMGFMEYFMID LVLIVTVIVVVLCLLLYFLLKLVYRISGKRMKVE" gene complement(<442701..>443307) /locus_tag="CRE_14160" /db_xref="WormBase:WBGene00070544" mRNA complement(join(<442701..443222,443266..>443307)) /locus_tag="CRE_14160" /product="hypothetical protein" /db_xref="WormBase:CRE14160" /db_xref="WormBase:WBGene00070544" CDS complement(join(442701..443222,443266..443307)) /locus_tag="CRE_14160" /note="contains similarity to Pfam domain PF05970 Eukaryotic protein of unknown function (DUF889); contains similarity to Interpro domain IPR010285 (Protein of unknown function DUF889, eukaryote)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07889.1" /db_xref="InterPro:IPR010285" /db_xref="PFAM:PF05970" /db_xref="WormBase:CRE14160" /db_xref="WormBase:WBGene00070544" /translation="MNEEVHNRMRGSEKIFYSRDEVVDDSNTKVVTTEFLNSINTSSL PPHRLKLKVGSIVMLLRNLDVASGLCNGTRLTVLELGRRMLKCKYSTGSRIGKTVLIP RIDCYDDNNLAFKLRRTQFPVRLAFALSINKSQGQSFSRIGLWLPEDVFTHGQLYVAL SRVRSKKGLFVKTENSNLLNVVFTEVL" gene <443625..>444841 /locus_tag="CRE_14111" /db_xref="WormBase:WBGene00070543" mRNA join(<443625..443710,443875..444657,444709..>444841) /locus_tag="CRE_14111" /product="hypothetical protein" /db_xref="WormBase:CRE14111" /db_xref="WormBase:WBGene00070543" CDS join(443625..443710,443875..444657,444709..444841) /locus_tag="CRE_14111" /note="contains similarity to Pfam domains PF07735 (F-box associated), PF00646 (F-box domain); contains similarity to Interpro domains IPR001810 (Cyclin-like F-box), IPR012885 (F-box associated type 2)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07938.1" /db_xref="InterPro:IPR001810" /db_xref="InterPro:IPR012885" /db_xref="PFAM:PF00646" /db_xref="PFAM:PF07735" /db_xref="WormBase:CRE14111" /db_xref="WormBase:WBGene00070543" /translation="MDDSKPFPLFRLPRIAIEEVISTMSPFEIINFSMTSMKIKYFIK CFLRTSRNSQYVLLMNANKEPTVSIEGSEKMYFEFKITLDEMKNGMREYKECLDEKFD TIWVYSENLIDEWMNLVKTSIEIFKFMKHIVIFDIDKFPTRNKSIVDFMKSQTPSIEC CEFHGKAGTDEDVEYFLNNINVTEFLGINLKLSDSFKIPQFNHLNSCSLDPANWLTFN QLLQFNGSELYIHGSPITNQELNLFLILWMTSQCHQNLRFLIININDPQSLATIFNLP FEIMDPNVERIGRLSNNATVSLRGGIDIKRNDGMTGTIHSDWRLDKMLLTMVVSRIE" gene complement(<445128..>446237) /locus_tag="CRE_14161" /db_xref="WormBase:WBGene00073492" mRNA complement(join(<445128..445288,445444..445614, 445770..445940,446096..>446237)) /locus_tag="CRE_14161" /product="hypothetical protein" /db_xref="WormBase:CRE14161" /db_xref="WormBase:WBGene00073492" CDS complement(join(445128..445288,445444..445614, 445770..445940,446096..446237)) /locus_tag="CRE_14161" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07950.1" /db_xref="WormBase:CRE14161" /db_xref="WormBase:WBGene00073492" /translation="MVSTPSITTDQASGSSVIDPLAVEAAWRHLLANPARAPARLFST EVQTQSSAAPPAPMVSTPSITTDQASGSSVIDPLAVEAAWRHLLANPARAPARLFSTE VQTQSSAAPPAPMVSTPSITTDQASGSSVIDPLAVEAAWRHLLANPARAPARLFSTEV QTQSSHQGYALPVSQIDFQPKMRNDYCELCKKSYTNRTVHLLSWEHHAASRNRK" gap 451685..451694 /estimated_length=10 gene <451828..>452061 /locus_tag="CRE_14112" /db_xref="WormBase:WBGene00077330" mRNA <451828..>452061 /locus_tag="CRE_14112" /product="hypothetical protein" /db_xref="WormBase:CRE14112" /db_xref="WormBase:WBGene00077330" CDS 451828..452061 /locus_tag="CRE_14112" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07872.1" /db_xref="WormBase:CRE14112" /db_xref="WormBase:WBGene00077330" /translation="MLLYKIICGATFFPEIHSYVRLSNSNRRPMTLICIRPQVNDFFS STVPIWNSITSNCPEFLSPGKFISLLEQSINRL" gap 456569..456790 /estimated_length=222 gap 460520..460804 /estimated_length=285 gap 461859..461868 /estimated_length=10 gene <463736..>468414 /gene="Cre-sre-5" /locus_tag="CRE_14113" /db_xref="WormBase:WBGene00070306" mRNA join(<463736..464015,464203..464207,467813..468025, 468109..>468414) /gene="Cre-sre-5" /locus_tag="CRE_14113" /product="CRE-SRE-5 protein" /db_xref="WormBase:WBGene00070306" CDS join(463736..464015,464203..464207,467813..468025, 468109..468414) /gene="Cre-sre-5" /locus_tag="CRE_14113" /codon_start=1 /product="CRE-SRE-5 protein" /protein_id="EFP07957.1" /db_xref="WormBase:CRE14113" /db_xref="WormBase:WBGene00070306" /translation="MLSPTSMYKLTVMNMTTAAIEQTDTIFQAALILEWVLISIGFGE TMLLWYLLRYTNQYHRNLAMIVEQLPNQYFPSLLARMYMIYKQLTIPNTGRPFKVMCF SIAFFASLCTSMLHVDEWTESQTIRNWVYMAFNFSCWSYGTIVPFFMLAYNPLWQKEL KRLGNRICCCLIHKNRIGEEPSRKKKKTTKVKDTFGRNCLVDDTEHSTIYFSQLNAEW NAPPEPDSKRRKSRDKKTELVPPTTAQPQSVAYRRSISNGSTSPRQEIN" gap 465912..467045 /estimated_length=1134 gene complement(<469122..>470648) /locus_tag="CRE_14162" /db_xref="WormBase:WBGene00070307" mRNA complement(join(<469122..469335,469386..470318, 470369..470430,470613..>470648)) /locus_tag="CRE_14162" /product="hypothetical protein" /db_xref="WormBase:CRE14162" /db_xref="WormBase:WBGene00070307" CDS complement(join(469122..469335,469386..470318, 470369..470430,470613..470648)) /locus_tag="CRE_14162" /note="coded for by the following C. remanei cDNAs: DT936464" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07895.1" /db_xref="WormBase:CRE14162" /db_xref="WormBase:WBGene00070307" /translation="MEVMEGSSDQFDDKNPETKFITCILRSMEANKRFALVSRVKSLR ILHQRIPLHIETLKFFRNGFQLNNIEHSFVVKVRASKNKELTPFQKSINDRHGVPFDL DRYGNEEPRTHQFPGDIKFGEKTTFEPQVPPQEAKKCYPYTCIVFKVNEKKWIKPMTR KIPLRQALRERLHCVLNKGTVYVKDLWFDMGQEMLRIPERLKFKTKRLHVKELSQEVC NAFSMVLRPSSFPLKEFEFQTTFSEDEVFANNDIVHVTKSLTIKLPSGYEAVSVVRLV KSLEIKRLHLASVMVLEDVLLPLIRDWIETPRNIGCTITMVSIIRTCYRVVSLANKEL KEKQITTREWNNNHHNCLSIKMNNFEFNIFRVPISNDMKELPYDDESINGSSLCLVKM VMEAEGTAEKTISAITDGTSSV" gap 476545..477120 /estimated_length=576 gene <480760..>485669 /gene="Cre-sre-4" /locus_tag="CRE_14114" /db_xref="WormBase:WBGene00070308" mRNA join(<480760..480926,482018..482175,482221..482346, 482404..482496,483012..483073,483781..483906, 485187..485320,485370..485448,485493..>485669) /gene="Cre-sre-4" /locus_tag="CRE_14114" /product="CRE-SRE-4 protein" /db_xref="WormBase:WBGene00070308" CDS join(480760..480926,482018..482175,482221..482346, 482404..482496,483012..483073,483781..483906, 485187..485320,485370..485448,485493..485669) /gene="Cre-sre-4" /locus_tag="CRE_14114" /note="contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor; contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)" /codon_start=1 /product="CRE-SRE-4 protein" /protein_id="EFP07961.1" /db_xref="InterPro:IPR004151" /db_xref="PFAM:PF03125" /db_xref="WormBase:CRE14114" /db_xref="WormBase:WBGene00070308" /translation="MLLDPITQIEFTSSFSSSTADMILFSLINRTASNLDMSSDLIDN LYILEIVLLVWSYFECGVFFYVLCTNSQYHPNLTWLLKNLVAQYFISMACRLFQIYFQ YGIDDESGLKTNWFFILVTFSRNCLIFTALYFSPFVMMERLYASVHIGDYEHKPRHYV GYTLSLFLYLWSLMIGLTYAFEVIPTYIHVSCLVSINMLAFVVCLLNESYNSKKFVQK KFSTRKSVAYSLTERYQIVENLKTAYLFKRGIISIIIFSVICGVFLVRMSSDEHDSSM NWILIGFNYAAILYGIGFPAAMFYYDQQFQKQLISYIRVMFCISSRTTPLYEQTEESS QKAKISRNLEAVKETDIYFNNLKGDWEKTAPKCKRKSEC" gene complement(<486300..>488916) /locus_tag="CRE_14163" /db_xref="WormBase:WBGene00070310" mRNA complement(join(<486300..486464,486639..487006, 487062..487484,487534..487619,488015..488243, 488344..488600,488646..488769,488817..>488916)) /locus_tag="CRE_14163" /product="hypothetical protein" /db_xref="WormBase:CRE14163" /db_xref="WormBase:WBGene00070310" CDS complement(join(486300..486464,486639..487006, 487062..487484,487534..487619,488015..488243, 488344..488600,488646..488769,488817..488916)) /locus_tag="CRE_14163" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07860.1" /db_xref="WormBase:CRE14163" /db_xref="WormBase:WBGene00070310" /translation="MWQTIGNNNANNISEKMFEEFLVLDLLSKNSTNYQYVVCYQKAL FEAIIPLASLKTFGRNGLQYGTVLCGTFLIDSSSKQLRVKSVRRIYMLTKANNNKWTQ LKLEFNERLKKHVIACSALTGGCFTYQEKEYRTPAVFNDVLGIIVDSDDEPQLPKRQI GRLFCTVTTIKCETDGAWKLRIEAVKKFEKVLSLAMEANVGDNEHFGLVTREECEEKR DLRLVSSRDFPRDVRIFRSGSHCCESMEPGHRRPHHMHSECMNTCVGAFPEMALIGRC MAFRMKRCHGMNPSQSTAVDAYTTTSSPTSEGRHVDFRSMRDNVSQLEVYVQSGFVEV VTIAEYSGYTDHDGQPLLWSHDVEFVVDISGLFRDQNFGFGLYKIKVVRFHRSNVFAK WRLARKNPILMATQTRFHSQSAHSISLASLSIHTKPIVDESTSEEVEEPRRRLPSFSR FGDSAQVFRKPSFPNPYVPFQSCCLPSTDSLDRLGLFDAMVRNERAASVSICVSAPST TTVPLGTRRVNYGRSMSVSNKIVEIDDDLLWAHHENSVSKIVEDDDDAVAVLPKVGIT TAAATTVGNFDENSNVF" gene <489515..>493285 /gene="Cre-sna-2" /locus_tag="CRE_14115" /db_xref="WormBase:WBGene00070311" mRNA join(<489515..489601,489734..489932,489977..490256, 490754..491242,491625..492432,493205..>493285) /gene="Cre-sna-2" /locus_tag="CRE_14115" /product="CRE-SNA-2 protein" /db_xref="WormBase:WBGene00070311" CDS join(489515..489601,489734..489932,489977..490256, 490754..491242,491625..492432,493205..493285) /gene="Cre-sna-2" /locus_tag="CRE_14115" /note="contains similarity to Brugia malayi Spliced leader 175 kDa protein, putative.; TR:A8Q170; coded for by the following C. remanei cDNAs: DT935972" /codon_start=1 /product="CRE-SNA-2 protein" /protein_id="EFP07881.1" /db_xref="WormBase:CRE14115" /db_xref="WormBase:WBGene00070311" /translation="MSEEVNPVIEQGGEEETTVEPAASLVSVNFQNLLNKSIDFDAQF SRPENSNERQIKTGRIEILFSSIDAARDAYTSLQKMVIDGFRPEVLVDPRFFSVETTT QKRQFFEIADDSRLVFLLDAPRSIDEHMIEHFFNGEAPIHFQTLPMASENGLFQVEVL LSNGEAAEKVLGGESKFKMHDGENECIVTLLSPREYALYSKMDDIRPSVTSRKAPVQH QSSEIPSNTTGQLAPEIDEDIILNRLLEIIEERKLNFAEINEKEELYELCDTVSAEYN GVPDSILKPAMGTVLQRHLNRTEMHWMRDHIEGLLRMWKMEIMNEQIYERSTFVPMET VNYQPVIQEEQKETASKGTLKRQKAARAQMGVGAFLTANRDRLIVESGDVEIESDDDG NMVVGGEALSFEAWARLTKTKASGVVRANDDGSKKIGNGGLSKKQMRQARLVEGMSQE EWKKWRNEKSSARKADIKQRIMARGAVIEGEDSVDGGAEMMDSEATSSELPTTAMTTA PPVPPPVKELDEGEIDSDEEKKDSTKNKIKRRASSDSSDSSSTSSEEDPDGPVDARKR RNKKRKMDRKMPRRNNAGASAQLDPVFKQMFENRKAIIAQMSPAHKAAFASALTQIAQ NNASSATQAKASQVINSMMSGFK" gene complement(<503058..>503837) /gene="Cre-cav-1" /locus_tag="CRE_14164" /db_xref="WormBase:WBGene00070312" mRNA complement(join(<503058..503489,503547..>503837)) /gene="Cre-cav-1" /locus_tag="CRE_14164" /product="CRE-CAV-1 protein" /db_xref="WormBase:WBGene00070312" CDS complement(join(503058..503489,503547..503837)) /gene="Cre-cav-1" /locus_tag="CRE_14164" /note="contains similarity to Pfam domain PF01146 Caveolin; contains similarity to Interpro domain IPR001612 (Caveolin); coded for by the following C. remanei cDNAs: DR775700, DT934734, DR775604, DR779734, DR778840, DR407979, DR777425" /codon_start=1 /product="CRE-CAV-1 protein" /protein_id="EFP07955.1" /db_xref="InterPro:IPR001612" /db_xref="PFAM:PF01146" /db_xref="WormBase:CRE14164" /db_xref="WormBase:WBGene00070312" /translation="MSTEQDTKTEEQIPLTYAAVAAPDTVATEGEAAVVAPEEPKPKK NWFTWGKKKTAGGDVANVEEGAVATGDDEPVKEKKEKTCWWKRCQKKGEGEQKEDNIA IGMDLVNRDTQNINNHIQLNFEDIFGEADSQHSWDCVWRLNHTVFNATRLFIYRLVSI LALPFTFLFAIFFGLVASINVFIIVPLGKLLSIPGNLLAKIWNWLVHAIFDPIASAVG LIFSNFNIRKYGINQETTAPCV" gene complement(<505810..>507473) /locus_tag="CRE_14165" /db_xref="WormBase:WBGene00084886" mRNA complement(join(<505810..506012,506862..506917, 506960..507057,507104..507227,507322..>507473)) /locus_tag="CRE_14165" /product="hypothetical protein" /db_xref="WormBase:CRE14165" /db_xref="WormBase:WBGene00084886" CDS complement(join(505810..506012,506862..506917, 506960..507057,507104..507227,507322..507473)) /locus_tag="CRE_14165" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07883.1" /db_xref="WormBase:CRE14165" /db_xref="WormBase:WBGene00084886" /translation="MPPLWILLLVFSVFSVLGEEEFNEKINMKLDVTCSVRPDWCFNI TIFTVKVVKKLPVDIYPKVKTILQKSFCSKTALSSQLFEDVSVVSPFKNGFRANYQLS HTCSSDGKPDCVVLDSPYFITFGKEFKFAPHKIGVLAGRGEFLSMLSITAFISHPNSS RFSHTDSISPRTLSSFTWFSIIFPLTICYSTLLSPIIAPLRALRRSPGVL" gene complement(<507787..>508529) /locus_tag="CRE_14166" /db_xref="WormBase:WBGene00084899" mRNA complement(join(<507787..507868,507914..508011, 508060..508186,508378..>508529)) /locus_tag="CRE_14166" /product="hypothetical protein" /db_xref="WormBase:CRE14166" /db_xref="WormBase:WBGene00084899" CDS complement(join(507787..507868,507914..508011, 508060..508186,508378..508529)) /locus_tag="CRE_14166" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07926.1" /db_xref="WormBase:CRE14166" /db_xref="WormBase:WBGene00084899" /translation="MSPLWILSVVFVLLHIQGAKGYNGTANLRVDITCTVRADWCFTL TMYTVYVKQKVPIILWSKNTTILERSYCHDNRASVHPMFKNVEAESPYKLGFFGSYQL SHTCTKDGKLECMVLDHGFYIPFKLKPDYKEFLFPSGDVGVEKGTGGCKS" gene complement(<509755..>510132) /locus_tag="CRE_14167" /db_xref="WormBase:WBGene00084897" mRNA complement(join(<509755..509836,509880..509977, 510022..>510132)) /locus_tag="CRE_14167" /product="hypothetical protein" /db_xref="WormBase:CRE14167" /db_xref="WormBase:WBGene00084897" CDS complement(join(509755..509836,509880..509977, 510022..510132)) /locus_tag="CRE_14167" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07922.1" /db_xref="WormBase:CRE14167" /db_xref="WormBase:WBGene00084897" /translation="MPAYAIDKKVLEKSFCWYNHESVHPMFKNVELPSPTKLGALVSY QVSHTCSTDKKPDCVFLDYGFYAPYGEETKFPPHELGIEQGRGECPDWKVNQ" gap 510771..511329 /estimated_length=559 gene complement(<512149..>512697) /locus_tag="CRE_14168" /db_xref="WormBase:WBGene00084898" mRNA complement(join(<512149..512215,512261..512358, 512405..512511,512637..>512697)) /locus_tag="CRE_14168" /product="hypothetical protein" /db_xref="WormBase:CRE14168" /db_xref="WormBase:WBGene00084898" CDS complement(join(512149..512215,512261..512358, 512405..512511,512637..512697)) /locus_tag="CRE_14168" /note="contains similarity to Interpro domain IPR000215 (Protease inhibitor I4, serpin)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07921.1" /db_xref="InterPro:IPR000215" /db_xref="WormBase:CRE14168" /db_xref="WormBase:WBGene00084898" /translation="MLLALFDRIYASISPFLLSKLPVYPKDKTILKKSFCSETALSSQ LFEDVSGVSPFKEGFRANYQLSHTCSSDGKPDCVVLDSPFFIPFGKEFKFAPHKIGVL TGRGECKE" gap 514235..514497 /estimated_length=263 gap 517307..517981 /estimated_length=675 gene <532056..>539872 /gene="Cre-nhr-97" /locus_tag="CRE_14116" /db_xref="WormBase:WBGene00070313" mRNA join(<532056..532157,534263..534407,536114..536179, 536228..536325,537964..538266,538420..538681, 539180..539334,539678..>539872) /gene="Cre-nhr-97" /locus_tag="CRE_14116" /product="CRE-NHR-97 protein" /db_xref="WormBase:WBGene00070313" CDS join(532056..532157,534263..534407,536114..536179, 536228..536325,537964..538266,538420..538681, 539180..539334,539678..539872) /gene="Cre-nhr-97" /locus_tag="CRE_14116" /note="contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core); coded for by the following C. remanei cDNAs: DT933322" /codon_start=1 /product="CRE-NHR-97 protein" /protein_id="EFP07884.1" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR001723" /db_xref="InterPro:IPR008946" /db_xref="InterPro:IPR013088" /db_xref="PFAM:PF00104" /db_xref="PFAM:PF00105" /db_xref="WormBase:CRE14116" /db_xref="WormBase:WBGene00070313" /translation="MSGDAQPSSNQRATDAHPPPSPPIIKEKAAIGALCVVCGDRACS HLYYGVAACHGCKCFFWRTVKSKLNYTCRYGGNCSISTAGRNACRYCRFHQCLSVGMK MEAVKMDRKLTKRKREKTDGDDTDDGGNQESYDNKIDAKRAKSDNRLLVSSLLLIDKT SSDGNAKLSSLHFVQPSLQNLLEEPELLDGFRSEMSYRATRQADDQLCYDNERRLVTW AIDWCRQTAEIGDVHHTNDKIALLRACCGPLVLLELGCQSSSFSQSDAQIPLCNNSFL PAHIIPPSASFLNWKTIQSLSKWTQRELKPLCLQAKEIGLLKALIVLNPEAHGLSQDA ESSIRMLRERVHTALFQQLMENSEPFAAASRLAQIMLLIPQLALMGVEVIEQVRVRNT FNKYSAFGEGLLFWQLYGDIFDDQHNDDNYLEHSASCSPTDSQYTNDSS" gene <539966..>540797 /locus_tag="CRE_14117" /db_xref="WormBase:WBGene00084903" mRNA join(<539966..540061,540696..>540797) /locus_tag="CRE_14117" /product="hypothetical protein" /db_xref="WormBase:CRE14117" /db_xref="WormBase:WBGene00084903" CDS join(539966..540061,540696..540797) /locus_tag="CRE_14117" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07940.1" /db_xref="WormBase:CRE14117" /db_xref="WormBase:WBGene00084903" /translation="MKKTLNMKETLMGNDDVIFDLGRLGYVDFRSRNSTIFTNIPNFD SESVYPSYFDPSDNVVPNHFG" gap 542764..543139 /estimated_length=376 gene complement(<543380..>544319) /locus_tag="CRE_14169" /db_xref="WormBase:WBGene00084890" mRNA complement(join(<543380..543625,543669..>544319)) /locus_tag="CRE_14169" /product="hypothetical protein" /db_xref="WormBase:CRE14169" /db_xref="WormBase:WBGene00084890" CDS complement(join(543380..543625,543669..544319)) /locus_tag="CRE_14169" /note="contains similarity to Pfam domain PF01827 FTH domain; contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)" /codon_start=1 /product="hypothetical protein" /protein_id="EFP07901.1" /db_xref="InterPro:IPR002900" /db_xref="PFAM:PF01827" /db_xref="WormBase:CRE14169" /db_xref="WormBase:WBGene00084890" /translation="MYELSLDAYDDFIKLQWYHLHGRYQPFFFNGILEDYSMNYAQEK LGVVVDGGRSVEKMLKSVKVHTVGFNDLEILLNSSLLKLKNLRTSFYTVEKKECRLDY LLFKEKLKNLFATRKQKVEAENLCFKVTDQSEILLILPHVDPSSVEDIYIEDSREIRD SELDIGEVVQTAQWKNARTLTLENCVLSAPLKHFTHFDEAYINVGSISMGDVIDMKNG ICQRNNFEKFKRIHLYYVYVSDEEELIRLLGEQTSDWSYTQVWLYETVDPRTALRLEK FENRITFQTRYVCPNMTLIPLE" CONTIG join(AAGD02004976.1:1..16863,gap(10),AAGD02004977.1:1..37107, gap(1999),AAGD02004978.1:1..39354,gap(97),AAGD02004979.1:1..7317, gap(404),AAGD02004980.1:1..1781,gap(596),AAGD02004981.1:1..26879, gap(193),AAGD02004982.1:1..12141,gap(10),AAGD02004983.1:1..14908, gap(10),AAGD02004984.1:1..54262,gap(468),AAGD02004985.1:1..1377, gap(10),AAGD02004986.1:1..35178,gap(10),AAGD02004987.1:1..40278, gap(10),AAGD02004988.1:1..18675,gap(326),AAGD02004989.1:1..27371, gap(120),AAGD02004990.1:1..35285,gap(6399),AAGD02004991.1:1..72246, gap(10),AAGD02004992.1:1..4874,gap(222),AAGD02004993.1:1..3729, gap(285),AAGD02004994.1:1..1054,gap(10),AAGD02004995.1:1..4043, gap(1134),AAGD02004996.1:1..9499,gap(576),AAGD02004997.1:1..33650, gap(559),AAGD02004998.1:1..2905,gap(263),AAGD02004999.1:1..2809, gap(675),AAGD02005000.1:1..24782,gap(376),AAGD02005001.1:1..3189) //