LOCUS       DS114150               29326 bp    DNA     linear   CON 15-DEC-2022
DEFINITION  Trichomonas vaginalis G3 strain G3; ATCC PRA-98 unplaced genomic
            scaffold 1047229021876, whole genome shotgun sequence.
ACCESSION   DS114150 AAHC03000000
VERSION     DS114150.1
DBLINK      BioProject: PRJNA16084
            BioSample: SAMN02953626
KEYWORDS    WGS.
SOURCE      Trichomonas vaginalis G3
  ORGANISM  Trichomonas vaginalis G3
            Eukaryota; Metamonada; Parabasalia; Trichomonadida;
            Trichomonadidae; Trichomonas.
REFERENCE   1  (bases 1 to 29326)
  AUTHORS   Carlton,J.M., Hirt,R.P., Silva,J.C., Delcher,A.L., Schatz,M.,
            Zhao,Q., Wortman,J.R., Bidwell,S.L., Alsmark,U.C., Besteiro,S.,
            Sicheritz-Ponten,T., Noel,C.J., Dacks,J.B., Foster,P.G.,
            Simillion,C., Van de Peer,Y., Miranda-Saavedra,D., Barton,G.J.,
            Westrop,G.D., Muller,S., Dessi,D., Fiori,P.L., Ren,Q., Paulsen,I.,
            Zhang,H., Bastida-Corcuera,F.D., Simoes-Barbosa,A., Brown,M.T.,
            Hayes,R.D., Mukherjee,M., Okumura,C.Y., Schneider,R., Smith,A.J.,
            Vanacova,S., Villalvazo,M., Haas,B.J., Pertea,M., Feldblyum,T.V.,
            Utterback,T.R., Shu,C.L., Osoegawa,K., de Jong,P.J., Hrdy,I.,
            Horvathova,L., Zubacova,Z., Dolezal,P., Malik,S.B., Logsdon,J.M.
            Jr., Henze,K., Gupta,A., Wang,C.C., Dunne,R.L., Upcroft,J.A.,
            Upcroft,P., White,O., Salzberg,S.L., Tang,P., Chiu,C.H., Lee,Y.S.,
            Embley,T.M., Coombs,G.H., Mottram,J.C., Tachezy,J.,
            Fraser-Liggett,C.M. and Johnson,P.J.
  TITLE     Draft genome sequence of the sexually transmitted pathogen
            Trichomonas vaginalis
  JOURNAL   Science 315 (5809), 207-212 (2007)
   PUBMED   17218520
REFERENCE   2  (bases 1 to 29326)
  AUTHORS   Carlton,J., Miller,J., Delcher,A.L., Schatz,M., Schobel,S. and
            Fraser,C.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2005) The Institute for Genomic Research, 9712
            Medical Center Drive, Rockville, MD 20850, USA
FEATURES             Location/Qualifiers
     source          1..29326
                     /organism="Trichomonas vaginalis G3"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1047229021876"
                     /strain="G3; ATCC PRA-98"
                     /db_xref="ATCC:PRA-98"
                     /db_xref="taxon:412133"
                     /chromosome="Unknown"
     gene            complement(<89..>1591)
                     /locus_tag="TVAG_124310"
     mRNA            complement(<89..>1591)
                     /locus_tag="TVAG_124310"
                     /product="hypothetical protein"
                     /note="transcript TVAG_124310A"
     CDS             complement(89..1591)
                     /locus_tag="TVAG_124310"
                     /note="encoded by transcript TVAG_124310A;
                     Identical to: GlimmerHMM gene prediction Covered by:
                     TigrScan gene prediction"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX89951.1"
                     /translation="MHIDAPCELKERLSYIDAMKAVIDNECHAGCPYQLKKNPNLGET
                     KLKFRCSADKCEACISFLKDDEEYILTEYNGTHNHNQIKDETKKYHTLSQCYRRVLIN
                     FIKQGGDPKMAQIECDKKLDLDDPLNRPSFLNASSDQMKTIQEKGNKKIKGIQKYDDN
                     QFKSTQLFKGIKEQESPKDLIYFDVDNYNKPKKLIFYYASFKFLDIIKIVKEHFIDAT
                     HSLLEFKMLFYMISAKFPNTHAFPIFQFVVYPNTSENIAFCLKAFFNWAKVKPKYFMS
                     DCAQEIENAIINSFPEVILHWCAVHVMRAFRKNLKDYAFESSDKLILDTKMNYLAYGR
                     NGKKEWIEPTFKKILEIAEKFPEFSKYIQNQWISNQERWTAAERDENLALTNNISESI
                     NKKIKYYYFGGTIFMRFDRFVMKLIDFIVPSFYYRISQDIRLRDKIPNPLPSEKKPKK
                     STIRLDTEKCIMLTDKIKSLIVNSSANLNTLQLGLDDLLDKVVKAAKVQK"
     gene            <2373..>4913
                     /locus_tag="TVAG_124320"
     mRNA            <2373..>4913
                     /locus_tag="TVAG_124320"
                     /product="hypothetical protein"
                     /note="transcript TVAG_124320A"
     CDS             2373..4913
                     /locus_tag="TVAG_124320"
                     /note="encoded by transcript TVAG_124320A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX89952.1"
                     /translation="MADGNDPSLVTTASLKGRETPIEGVQTKRASKVLIETPSMPFET
                     ESYKFRQTATKSQQQTSPSRRAPQTSSGKRIKEGLYSVKMKNSTWTHTDPDVPDHYAS
                     RKEILEVLNNFESAVKSLTGVDDTKTASAMQNITDLLLEQLACMLRAECREQELIVEK
                     SRESYAEVFLLLRKEINKSHDEMDKLKNHNVQLEAELTKVIDTSSERVNEIQFDCERQ
                     LKAKDDEMEQRKQEYDLSMKRFLEQKSQLEEHVKALHRVFLDFQSDSVYITLEDLKQK
                     LANTEKKLRYKETEIQKLNDKIDKHKKQILDLQAQKTNLDQANGELRRKLQNALASKG
                     RLERQIEIQQFGEEEDGEKKGKRNLSVDSTPYISVLQKLNQIYDKISDILQRSNVNVP
                     SQQQYTDDIDKVLLSGNPALMIQAVEKRVIDVLQTTENLDSVDIHADNDFIYDSIQNP
                     RFLQYVAPHIDVPLPNTQSSDYNPFQIMRQIFQAKYLQDEWMKRTGGQVQRFPEFIVS
                     FFTRNDESLFVALTNAARLWRCISDEKYSEMKLFKSFALEEYTCDELTFFLRCRYLLL
                     GLPGIDSQAPKKIMVDISEIKNMMNSVVGQYSHVAQSVIEKAEKQANNENRIDYAEFM
                     IIFLEFYERERRKRRNAVRLMFQSKQYMQGNIKIDFENFCALVKSLGYQGDSQTVFEL
                     YREATMVSKGDLNLESLLTAMDSMGFHFYSIEAPITLLHNTPVTELKRSDLFKRWIRF
                     GRWFEGFLKPLGTFDTWLHAELKQAVKRVDNIFKTNSPVPVMFNEYRKLLDYFQFMLD
                     MLAEGSKNPMTPEKSNRELLLMENLVDLLVTHVVTECDKDYIFEELTS"
     assembly_gap    5102..5201
                     /estimated_length=unknown
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<11644..>12309)
                     /locus_tag="TVAG_124330"
     mRNA            complement(<11644..>12309)
                     /locus_tag="TVAG_124330"
                     /product="hypothetical protein"
                     /note="transcript TVAG_124330A"
     CDS             complement(11644..12309)
                     /locus_tag="TVAG_124330"
                     /note="encoded by transcript TVAG_124330A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX89953.1"
                     /translation="MTLHMIDIFSQIRAKDIKLFTELHKKILNEFSCLIKPKNEKLAT
                     LLYYKCFNFEIFKPEIEEEEIVNLYSTESPLYYIAWDKVDDLKSKFPNLDINWEINEI
                     TPLNCSIKYGSELCFNYLKNLGAKYTDNSEKYAVQGGNKNIFMEMIEDGKSFDNMIDT
                     ALDYHNYEIANYLKSNFGQTPDSIAESMYFGNYDVASYLLSNGEDINKIYSFLLFIFI
                     IVL"
     gene            <12976..>13155
                     /locus_tag="TVAG_124340"
     mRNA            <12976..>13155
                     /locus_tag="TVAG_124340"
                     /product="hypothetical protein"
                     /note="transcript TVAG_124340A"
     CDS             12976..13155
                     /locus_tag="TVAG_124340"
                     /note="encoded by transcript TVAG_124340A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX89954.1"
                     /translation="MSDIYQAITEDNVEQMQACISGGVDINKPGANGLTPLMFAVQEG
                     KEKCLGALIKAKADV"
     gene            <13273..>15090
                     /locus_tag="TVAG_124350"
     mRNA            <13273..>15090
                     /locus_tag="TVAG_124350"
                     /product="hypothetical protein"
                     /note="transcript TVAG_124350A"
     CDS             13273..15090
                     /locus_tag="TVAG_124350"
                     /note="encoded by transcript TVAG_124350A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX89955.1"
                     /translation="MTPLHHAAKNNRKKTCELLIRSKATVNMPDAEGNTPFLTALIAG
                     SSDAVASFIKADATDLTVQNKKQQTPAHFLAAMGNIAILKSLAKKGLNWNAQDDQGRT
                     PVELCADSGNAQCFEFLLTKLGGDPSVTNAAGESLAHIISAKGHAPLLGILKASGGNV
                     DSEDANGCHPIQQAAASNSVAVIEALIKLMAQVNCTDAKGDTPIHYAANNGAVEAMEC
                     LVNSGADINSKNKAGESALHIAVKKGDCKMINALSDKNVDVSLRDNNGNTALHLAIPL
                     HNTEVINTLIGISVPPNSQNNDNMTALHLAATLGDVELVQNLIKAGADVDMKNNDGET
                     PLELASACGDVPVVKALIEARADVNSKDGQGMTPLHKAVQKNQVEVIKCLKEANANIN
                     AKTGDGETPLIIATKMKNVDLIMMLIDMGCDVNIGDINGTTPLHYACKLDLTKPALQL
                     IEKGSDIMAKGEGNNTPLHFASLNMNKQLVEVLIKKGANAREMNSEGRTPLQGIRLTF
                     AKFMKQLMGEDKGDKKEDIKIDVSEVLNQSGEKLETQTELKDTFCLLCRRRAATAALL
                     PCGHLCICDACQHERLATLKQCPICKKDVYGACAIFCEN"
     gene            <15513..>16880
                     /locus_tag="TVAG_124360"
     mRNA            <15513..>16880
                     /locus_tag="TVAG_124360"
                     /product="hypothetical protein"
                     /note="transcript TVAG_124360A"
     CDS             15513..16880
                     /locus_tag="TVAG_124360"
                     /note="encoded by transcript TVAG_124360A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX89956.1"
                     /translation="MNSTVFIDSYEPVLEQLHKMSLEEEMNQEHAVYLVKILNRCLKR
                     NPEADFPHNIFKQDDLVLLLDFCLNEKYIDTDFHKALYRTIYNVIMENPRYNRSSFIP
                     LLIDRFDHFCKLFDSIPPNSSNMITKIGIFNLMSSLMHENSESFAHVYEKFNLDMAYE
                     LFQNFPCFCSYLYNLVKNPSIEYDAMPQIVSSIINHAISIIPKISISSKEDTMKRDRT
                     ISKDLRKMNDCLLALNSCTRFPEIFFEVFQGIDIYDKYINNIMQYKDAFSNVIKLSKS
                     ILQIKSDFDYEISIYGIVFMISYILEQLYNLYKWVNIAEDGIYLLTLLSERKIYNKQI
                     DSICNQMILNKLLQDSIEIGCQQQYLQLLCNLAKDDINYTMVTDESSLKIAINFLGDD
                     NPVFALEFILMRVQKSVSQNNFEDSLDVLDVSEKESIIELVESEDEKISILAQNLSDL
                     IASYA"
     gene            <18298..>19245
                     /locus_tag="TVAG_124370"
     mRNA            <18298..>19245
                     /locus_tag="TVAG_124370"
                     /product="ankyrin repeat protein, putative"
                     /note="transcript TVAG_124370A"
     CDS             18298..19245
                     /locus_tag="TVAG_124370"
                     /note="encoded by transcript TVAG_124370A;
                     Identical to: GlimmerHMM gene prediction Covered by:
                     TigrScan gene prediction"
                     /codon_start=1
                     /product="ankyrin repeat protein, putative"
                     /protein_id="EAX89957.1"
                     /translation="MKNAIISHNIDFVCFLMNEYQLKIDFVLCIMFDNIQAFFVYLDQ
                     TREISVCFVNLPYFRLKSLVNYFMQHGIDINTVVLSDTALINSIKVESLDLLEYLVLN
                     GANINTGYKSSHSPIHIAAGRGNEEIVRFLISLGAKIKNNKKITPPLLVAAGKNKIKN
                     AKILISNGADINVKDSADRNVLYLSLENSNEEMTKYFISCGADIHAKDFYGNTTLHYA
                     AKNNLTNTIIYLISQGLNINEKNLEGKTALHYAAMGNSKDAVELLISLDANIHIKDND
                     KKPAIHYVKINKYKEIIRILRSHKNDHYGLRHLSLCNIV"
     gene            <19538..>21385
                     /locus_tag="TVAG_124380"
     mRNA            <19538..>21385
                     /locus_tag="TVAG_124380"
                     /product="ankyrin repeat protein, putative"
                     /note="transcript TVAG_124380A"
     CDS             19538..21385
                     /locus_tag="TVAG_124380"
                     /note="encoded by transcript TVAG_124380A;
                     Identical to: GlimmerHMM gene prediction Covered by:
                     TigrScan gene prediction"
                     /codon_start=1
                     /product="ankyrin repeat protein, putative"
                     /protein_id="EAX89958.1"
                     /translation="MNKIQHNELIDLSKDYCNTFCALYRLNTQDEAEIDKIYKQIKIK
                     LIDTKMFLPSQILEVICNVAKLNNRYMKSYWELFRKTAENYKIQQIFSSTYNQSKYKT
                     YESYLKERYIKYFIWDEIYFEKEEKTNDKNKNINYSLDIHESNPICRSLVLDDLGSFI
                     FYTEQDGFDKYQRVKSNFYPYSLLGYSLLELCCYYGAIRCFKFLRTKFNSEITEKCLQ
                     FSFLSGVPDIMNECLKFQRPYKECMECAIISHNIDFVSFLMNEYHLKIDLEDCCRYHN
                     LQVYLMYLDITKDINNCFVLSPSFHFPELCKYLISHGANVNAIGHSSKTHLCYSAVNS
                     SRETVDYITTYGVNFVRDYNYEWFAIMDAAWNNSAEIAEILISHGARIDSHGINEKTA
                     CHIAIERNSIETIKVFVAHKDLINDSTLHLALIYDKEEIAKFLILNGININTHDNNGK
                     TPLHIVADGNKTEMAELLISHGANINLTDKNDETALHYALKYDRKEMTELLISHGVNI
                     DAKDKDGKTALHIAAERNNKEIAEFLISHGANLEETDNEGKSALDYAIRYDRKEIEKL
                     LISYGANINAQVINGESAAITNRTNNEGKTFSQYYHNFINYTFSNCIII"
     gene            complement(<21573..>22634)
                     /locus_tag="TVAG_124390"
     mRNA            complement(<21573..>22634)
                     /locus_tag="TVAG_124390"
                     /product="hypothetical protein"
                     /note="transcript TVAG_124390A"
     CDS             complement(21573..22634)
                     /locus_tag="TVAG_124390"
                     /note="encoded by transcript TVAG_124390A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX89959.1"
                     /translation="MQYIKAKELLNETLQLEQYPSMYRQIPDRSCNPKFYDAQIQFWS
                     KFLIDWSKRYNVVSFHATKLEETLMWNDIYPPLAPTLKTLLKSKIIQKSSKFVIKRSL
                     LSSIIASMRCEDPSDYENIEYNFYQNFEQISRTVRDNIMKNVRPSYDLVISDEELIEK
                     FNITSISHLSNVLEKNRYASRLPDGGFLFSSDIITTPPQNQISLFLALKKSIYQMKKK
                     IKSIDDMISTAQDNKYFETARKLQQIKSNAEELLKNGEKANNILQKGFSHETILNQTE
                     NSVNSLQKFLISSIDQLMKEVEVESRDPPENFGHQKEENEETQKFENDASDPHPNEAH
                     NVGNDDFDLGFMPTRSVYK"
     gene            <22903..>24999
                     /locus_tag="TVAG_124400"
     mRNA            <22903..>24999
                     /locus_tag="TVAG_124400"
                     /product="hypothetical protein"
                     /note="transcript TVAG_124400A"
     CDS             22903..24999
                     /locus_tag="TVAG_124400"
                     /note="encoded by transcript TVAG_124400A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX89960.1"
                     /translation="MGGALSSSDAIPAFLRTLLSGACPPAHPIWASFNITSFNTSEMT
                     KEDILLLQEVRDKRPDNFAELVRCITDAFTREIKLAENEIQNDSMYLDFSMYSDMICL
                     LLSISGLPQKISPWFKAPTLYLKQSLPLHQVLLAEFRLLNMTDSIFNCYSDELQANIT
                     FVKTLLFVQQAEAFTYPVKSDPSQYLLSFDIFPAKAFLPVLFEFIPKAILTTRSEPIL
                     KYVRALITASILPIYCCNTWKTALSCVEQNIIHRAFEPLLTLTDNIYPTGLPGRVLAC
                     SDQLISLLYTVILRFPTFLKFIDTNKLAQKYIEVLLLLFRYKMDNGSITFIHSIILLI
                     ISHLTSDFHSLLTLNDPFVETLQIKEQRPHRGTYADLIIEIITFPLIKDFKSAFPLAP
                     LVTAIIQNLSSTTAHLSFFNANRIYEILRLFFKSKAAEHPESKLPIARLLNSIYQFIR
                     FQTLGKKSILLYGIVHRVIIDSLAASALPEWRKPAEKIKKLLDAADEPLKSKEKNADA
                     VLQNAMAPILIEFADSPVPQTSFTMGAEVETIWYDWSRILLWRVFPDEAEFYHLNFLT
                     FKSPGNEKAIPNPVPEESLSTEPAPTESFATGIINQAEQQKKNEIEEKEESEPEVQQY
                     KAIEQTPVQQSSAQSIIEATKPAISKIRNPKLQIKEVSEPDQLQAPVKHAKTLEELDN
                     PFGSDDEDELAKFLED"
     gene            complement(25200..>25685)
                     /locus_tag="TVAG_124410"
     mRNA            complement(25200..>25685)
                     /locus_tag="TVAG_124410"
                     /product="hypothetical protein"
                     /note="transcript TVAG_124410A"
     CDS             complement(25407..25685)
                     /locus_tag="TVAG_124410"
                     /note="encoded by transcript TVAG_124410A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX89961.1"
                     /translation="MARRTKKVGICGKYGVRYGASLRKTIKKIEISQRKKYPCAFCGK
                     DSVKRNAVGIWTCTKCGKAVAGGAYTPTTPAALTARAAYKRIREAQAK"
     gene            <25964..>26866
                     /locus_tag="TVAG_124420"
     mRNA            <25964..>26866
                     /locus_tag="TVAG_124420"
                     /product="hypothetical protein"
                     /note="transcript TVAG_124420A"
     CDS             25964..26866
                     /locus_tag="TVAG_124420"
                     /note="encoded by transcript TVAG_124420A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX89962.1"
                     /translation="MSSSEQTKNEVGCDFNDIKPIEIFEYPSQASKHIWNLNSNNILQ
                     TSSQIIEFIKSNKIPIQMTLYLIDIFSQIREKDIKLFTELYEKILNEFSCLIKPENEK
                     LAMLLYYKCFNFENFESEMKEEKILNLYPTESPLYYIAWDKVDDLKSKFPNLDINEKI
                     NEITPLDCSIKYGSELCFNYLKNLGAKYTEYSEMYAVQGGNTNIFMEMIEDGKSFDNM
                     INTALDYHNYEIANYLKSNFGQTPDSIAESMYFGNYDVASYLLSNGEDINKIYILFIF
                     TFFIVLFNSLSFCIYHYFVKFSQY"
     repeat_region   28789..28813
                     /rpt_type=tandem
                     /rpt_unit_seq="a"
                     /satellite="microsatellite"
CONTIG      join(AAHC03004810.1:1..5101,gap(unk100),AAHC03001156.1:1..24125)
//