LOCUS DS113683 65522 bp DNA linear CON 15-DEC-2022 DEFINITION Trichomonas vaginalis G3 strain G3; ATCC PRA-98 unplaced genomic scaffold 1047229019999, whole genome shotgun sequence. ACCESSION DS113683 AAHC03000000 VERSION DS113683.1 DBLINK BioProject: PRJNA16084 BioSample: SAMN02953626 KEYWORDS WGS. SOURCE Trichomonas vaginalis G3 ORGANISM Trichomonas vaginalis G3 Eukaryota; Metamonada; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas. REFERENCE 1 (bases 1 to 65522) AUTHORS Carlton,J.M., Hirt,R.P., Silva,J.C., Delcher,A.L., Schatz,M., Zhao,Q., Wortman,J.R., Bidwell,S.L., Alsmark,U.C., Besteiro,S., Sicheritz-Ponten,T., Noel,C.J., Dacks,J.B., Foster,P.G., Simillion,C., Van de Peer,Y., Miranda-Saavedra,D., Barton,G.J., Westrop,G.D., Muller,S., Dessi,D., Fiori,P.L., Ren,Q., Paulsen,I., Zhang,H., Bastida-Corcuera,F.D., Simoes-Barbosa,A., Brown,M.T., Hayes,R.D., Mukherjee,M., Okumura,C.Y., Schneider,R., Smith,A.J., Vanacova,S., Villalvazo,M., Haas,B.J., Pertea,M., Feldblyum,T.V., Utterback,T.R., Shu,C.L., Osoegawa,K., de Jong,P.J., Hrdy,I., Horvathova,L., Zubacova,Z., Dolezal,P., Malik,S.B., Logsdon,J.M. Jr., Henze,K., Gupta,A., Wang,C.C., Dunne,R.L., Upcroft,J.A., Upcroft,P., White,O., Salzberg,S.L., Tang,P., Chiu,C.H., Lee,Y.S., Embley,T.M., Coombs,G.H., Mottram,J.C., Tachezy,J., Fraser-Liggett,C.M. and Johnson,P.J. TITLE Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis JOURNAL Science 315 (5809), 207-212 (2007) PUBMED 17218520 REFERENCE 2 (bases 1 to 65522) AUTHORS Carlton,J., Miller,J., Delcher,A.L., Schatz,M., Schobel,S. and Fraser,C.M. TITLE Direct Submission JOURNAL Submitted (23-MAY-2005) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA FEATURES Location/Qualifiers source 1..65522 /organism="Trichomonas vaginalis G3" /mol_type="genomic DNA" /submitter_seqid="1047229019999" /strain="G3; ATCC PRA-98" /db_xref="ATCC:PRA-98" /db_xref="taxon:412133" /chromosome="Unknown" gene complement(<77..>931) /locus_tag="TVAG_009940" mRNA complement(<77..>931) /locus_tag="TVAG_009940" /product="surface antigen BspA-like" /note="transcript TVAG_009940A" CDS complement(<77..931) /locus_tag="TVAG_009940" /note="encoded by transcript TVAG_009940A" /codon_start=1 /product="surface antigen BspA-like" /protein_id="EAX98219.1" /translation="MFFSLFLISLSNSLDFTQNGTLLTITGNGAVTLREFKEKIVNFD KLTKITIKEPISSIGRRTFISCTNLKEVIIPESIIEIDEAAFIYCTSLESIILPSNIT IISNSLFHHCKKLSSIQIKGKITKIGEKSFKECASLTEITLPDSLISIGTEAFSSCIL LTKIILPKSVSTISSKAFNGCISLNCVKYNGNISPLGFSNDIFSGCTLLKQITVPSVF LGTDIAGIPVKKESLEPTPEPAPTETSSSAVIPSQTPEPTIVSSDSSELVTNSSSSHV TKIETPEPT" gene complement(<2010..>2405) /locus_tag="TVAG_009950" mRNA complement(<2010..>2405) /locus_tag="TVAG_009950" /product="glutamic acid-rich protein, putative" /note="transcript TVAG_009950A" CDS complement(2010..2405) /locus_tag="TVAG_009950" /note="encoded by transcript TVAG_009950A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="glutamic acid-rich protein, putative" /protein_id="EAX98220.1" /translation="MTQPIFEFSAARAKAEIARATTIHPNLLLSLYEISQKKKMEAEK EKASKKASKIDKKDKKERKGNKDKKDKYRNNKFNETKEMKKDNKHKSKNEIVNIDVPQ SVLKNILNEAGIKTDGYEITLRSVPKSLD" gene <2602..>3546 /locus_tag="TVAG_009960" mRNA <2602..>3546 /locus_tag="TVAG_009960" /product="hypothetical protein" /note="transcript TVAG_009960A" CDS 2602..3546 /locus_tag="TVAG_009960" /note="encoded by transcript TVAG_009960A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98221.1" /translation="MYNKEFSHKKKGNNRVWTFLAYKPYVKNLKLYESAIEHAKILTN GSIAYGKINCQAQTRLCESLKIENFPSIIIKNRTYDISYNEQPNPVRIAKEAFRIVNS SLVEEVNDFWLDDYRAKPTAILFTCKKGIPGYWAAISRVYNKKLRVGICHDDGLFEEF GIKDVPQIVFYNDTKTIPHEGARKFRYVNESANAFLNKRPSKSPIGADFHVNAEFPEY CYDYQKTCIFCNENFIDPELDELRNHFRDPKFQFFIGKSGLPFKDIKSGAIVIYSAKK EGIIIEEDIKKAQSAIDRVIDGTAKFKSIPRNEIYMEL" gene complement(<3712..>4341) /locus_tag="TVAG_009970" mRNA complement(<3712..>4341) /locus_tag="TVAG_009970" /product="hypothetical protein" /note="transcript TVAG_009970A" CDS complement(3712..4341) /locus_tag="TVAG_009970" /note="encoded by transcript TVAG_009970A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98222.1" /translation="MKSGKVYPGEKLDSGLGRRNARVDSVPYKNRNDNNNSNKNDELK ASAALFLTELAQQLTSNTSSSKFVLQTFSSQMLRNGSFYRARLAGLKDEEIDSILRKN SVLSVCLPPISAHDYSYLHNENQNPKYQEKVRTHVNELSGYVRNLDLEKIMFLDKAKQ TQVLTWWIDYQLGIVNTRSSQIDALLSSIGNDLENIDDNQIIEPNLYTV" gene complement(<4576..>5283) /locus_tag="TVAG_009980" mRNA complement(<4576..>5283) /locus_tag="TVAG_009980" /product="Flavodoxin-like fold family protein" /note="transcript TVAG_009980A" CDS complement(4576..5283) /locus_tag="TVAG_009980" /note="encoded by transcript TVAG_009980A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="Flavodoxin-like fold family protein" /protein_id="EAX98223.1" /translation="MRVLFLVAHVDPTHKATAFRFADSAKAALEKAGHEVRYVNLVES GFDRTLTAKDFKKIPDGTFSIFAVTGQDNLIDEIKVQQENLKWATHVVIFAPMWYGRF PSCVYAYTERVLNVPFAWDFEHMLDKGYLAGKKVTSVISTGSAPMFFDPKEGNGLDAY TWSALYAFNYSGFTILRSIGIHGANSPKRIAMQPELQQKLNDKLLNLDNWKVITDKKF VPLATLDQITDPENLIQ" gene <7286..>8371 /locus_tag="TVAG_009990" mRNA <7286..>8371 /locus_tag="TVAG_009990" /product="regulator of G protein, putative" /note="transcript TVAG_009990A" CDS 7286..8371 /locus_tag="TVAG_009990" /note="encoded by transcript TVAG_009990A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="regulator of G protein, putative" /protein_id="EAX98224.1" /translation="MTSAESWKVVIGPTQFPNIIDHLFLWIFIPLHFIPYPVRALQFI IKYHIGKAYADKEEVEDNQTDGTYSKHWINVSKHKFFLTDYAFLFYSLLLLMGPFILG MYRLIKYQENQPGHYGNGIQKSTYIFSAILVAFISIFLWVCVYFLRNVHDEIAINTEL KLIGIAWIIAVPFYVAFGIANIEKPDVIPPESPPICCIILCMVSFMISFSLPVSLATW KNPDFKLTIPEFRSVDNVLEDPNAYKMLRKFMQSNTCVEGLLFLRDTMKYKSETDPDK LHDMAHRIYEKYIFEEAPMEINIGALIRTECLKHINEISPNVFDRAIQEIKKLINQDQ LPRFMQSSEMMQYIKNYKVSVIPESMV" gene complement(<9198..>10715) /locus_tag="TVAG_010000" mRNA complement(<9198..>10715) /locus_tag="TVAG_010000" /product="hypothetical protein" /note="transcript TVAG_010000A" CDS complement(9198..10715) /locus_tag="TVAG_010000" /note="encoded by transcript TVAG_010000A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98225.1" /translation="MNKMIFSELTEKYKDVTDTFNAIYSLKSENEEEIENIYQLIKTK LMETNTISLSYVLSGICNAEKFRNRYMKSYYGIFKKLVDEFKPKEIPHISILFDYLIY KETGVVYDVKHKLNFKNFMASNSLSSYENDELYKSIINNDKESFIIQTGKEGFNANKV YDNGLFSTDIIQYTLLELCCYYGAVDCFKILRSNYKSEITDECLLLSFLSGIPDIVNE CLKYQQPTEKCMKYAIISHNIDFVCFLMNEYGLEIDLDYCCKFNNLQALLIYLDQTND IEKCFVYSSCFGNSLIEYFLAQGVNINSRDQLGRTALHIATLYNNIESLELLISKGID INGKDEFGRTAVYFAAENNLVDILKVLFSHGADINAVNTTKRSALHVATLNRCKEAIE FLVSHGAEINAYDNFNNSPLHIAVGNSWIDISRLFISNGAEVNCKNQNGRTCLHIAAC NNNKEAAELLISSGADVNAKDIFEETPLQAASHYNNQAVIEVLISHGAEPATKVD" gene complement(<11395..>12642) /locus_tag="TVAG_010010" mRNA complement(<11395..>12642) /locus_tag="TVAG_010010" /product="ankyrin repeat protein, putative" /note="transcript TVAG_010010A" CDS complement(11395..12642) /locus_tag="TVAG_010010" /note="encoded by transcript TVAG_010010A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="ankyrin repeat protein, putative" /protein_id="EAX98226.1" /translation="MDDDKDSFIVFIESESFDKTQKLKHDFYPESDEGYSFLELCCYH GAVDCFKLLRTKFNSEINPQCLQFSFLSGKPDILNECLKFQIPDQECMKYAIISFNVD FITFLNREYGLEIDLDTCRLWRNYQAFFIHLDVSNDIENCFPYTPCFGTSIFEYFISQ GVDINAKDNHSHVTALHLAALIGNIEIVKFLVSRGVNINSTDKNGKSILNYAASFSNK KMIEFLIENGADINAKNKNGMTILQVAALTNNYDAAEFLILHSKKIITKGNFGETIAF VDEQDNEGKTALHYAVQYNSFDTAKLLILNGANINIKTNNGITPLLVAIHQNSFEIAE ILLSNGANINDKEIHGYSSLHFAVSLEDVDKAKYLLMHNIDINAKDNSGLSAVDYAYI KEDKEMISLLEQYGAKRSVQTYF" gene complement(<13565..>14290) /locus_tag="TVAG_010020" mRNA complement(<13565..>14290) /locus_tag="TVAG_010020" /product="hypothetical protein" /note="transcript TVAG_010020A" CDS complement(13565..14290) /locus_tag="TVAG_010020" /note="encoded by transcript TVAG_010020A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98227.1" /translation="MNFSPYLLYFSLLLFILAFFCLSQIQVIREIRASIIDLLSINFK TSNKKIPISTGITTYAPSGLQYSPTERFSPMSPSQISDSVRMLTSFQEILQTNHSNIL FKANLAEKIKTQFKKAQESEKTAEKHTETTTSKLAINQRVQSDTIYSINPTKPEPKKY QPPAVTEEKKENTEQAAEESAATAKPAIGKGLSKGIGGGIGGGIGGKPAMGGLSGIKK TGLTPSSTPSKAPAFGKLSIGAK" gene 14889..15478 /locus_tag="TVAG_010030" mRNA 14889..15478 /locus_tag="TVAG_010030" /product="hypothetical protein" /note="transcript TVAG_010030A" CDS 14892..15419 /locus_tag="TVAG_010030" /note="encoded by transcript TVAG_010030A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98228.1" /translation="MTFEEKLKPYEKWVKLAQEVLLFKRPVIFAALLLTVLGLFGFAK SVEAGFFASVCLAICALYFAVVFYAYLGSKVDKFLFSELPGDDPTASNRVRSLKELDE LFGKYIPAECPCKTCCSLSKKGTFIAIGVSFALAVFFKFVPPFWFNLVVATLALVLPG VLTLPPVAQRSSCHV" gene <16107..>17090 /locus_tag="TVAG_010040" mRNA <16107..>17090 /locus_tag="TVAG_010040" /product="Ser/Thr protein phosphatase, putative" /note="transcript TVAG_010040A" CDS 16107..17090 /locus_tag="TVAG_010040" /note="encoded by transcript TVAG_010040A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="Ser/Thr protein phosphatase, putative" /protein_id="EAX98229.1" /translation="MRAARRSSFSNVPQQVLENFQKLFAVDPEKLASGEVTAQFPTFN SFTIINLLIMVKNLFNAEDVIIKAKSPMVVVGDLHGHIIDLLRIIKLNGFPLNKRYLF LGDIVDRGQFSFETLILVFAMKINWPQNVIIIRGNHEFDFTCKNSGFLAELKALYKDY ESLYESFLDVFASMPFGCIIDNKYLAVHGGIGPNFTKIEQLAAIKRPITDFGLNTLDE VLWSDPNIQVRDYERSPRGTGVLYGIDAVNKFLQDNKITTIIRGHENTYKGIEILFNG KVITVFSASNYCGIGNNNAGVLLISGAKVQPVIYGPLPYVYRNQVQYLPAP" gene complement(<17428..>17874) /locus_tag="TVAG_010050" mRNA complement(<17428..>17874) /locus_tag="TVAG_010050" /product="hypothetical protein" /note="transcript TVAG_010050A" CDS complement(17428..17874) /locus_tag="TVAG_010050" /note="encoded by transcript TVAG_010050A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98230.1" /translation="MESEISNFPPTSAIFLPSKNNKHTKKDKLSAISKAELMGGFQPT LTEIIESTRENNPFDYQNSQKSTSKEQSSSSCFDSPKKIRSSYSSDPYFRKKNELRRF ISEEFARLINQDHQEYLSAYSRKELNVCGGFPNHRIRKQMLMIGLL" gene complement(<18342..>19604) /locus_tag="TVAG_010060" mRNA complement(<18342..>19604) /locus_tag="TVAG_010060" /product="hypothetical protein" /note="transcript TVAG_010060A" CDS complement(18342..19604) /locus_tag="TVAG_010060" /note="encoded by transcript TVAG_010060A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98231.1" /translation="MTTETNSEVRMPQELDEINALFQKKPEVAQEEPKKSKLHLDLTL KTKIKIGVAVFILILGIIIKILLKKEIRTIDTPMKYVKTAKIATAINSFVHSSEPSDI TILYGPKGFGKTRGLNIAVEQLKSSGKFVVNLDFSVLTKESTVQDIITIIKSSIITAF KNTEMTIPSIKLALPSLASLTSIVGVEPPQIGGFQDPTVRQIASSLCTLIDTIGKHPS STEIILRGFDVLGNVFLVVNEPQNAIKLPIYNEFLEELQKISSGSHHISCIAEISDVE WLLNQPEILHAKRIYIDEFTLEEAKEYLAGDFKPRQISEMFDAFGGNGRLFALVHETM RLGLDFKEALQYVINIEQMATKQALARLPEGGMPTLLNLTKSEVNLDFNNTIARFLID EYLATPIRQGVIKPLSKITVEYLKTLDK" gene 19707..19778 /locus_tag="TVAG_010070" tRNA 19707..19778 /locus_tag="TVAG_010070" /product="tRNA-Gln" /note="anticodon TTG" gene <19836..>20057 /locus_tag="TVAG_010080" mRNA <19836..>20057 /locus_tag="TVAG_010080" /product="hypothetical protein" /note="transcript TVAG_010080A" CDS 19836..20057 /locus_tag="TVAG_010080" /note="encoded by transcript TVAG_010080A" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98232.1" /translation="MKQINTFSIIHDDEFVPLSTEVMDNVVIIENDEVDWQDDFNLPP HPEMQHQYRRYASQNEQDESNQNIQFNQA" gene complement(<20643..>22265) /locus_tag="TVAG_010090" mRNA complement(<20643..>22265) /locus_tag="TVAG_010090" /product="hypothetical protein" /note="transcript TVAG_010090A" CDS complement(20643..22265) /locus_tag="TVAG_010090" /note="encoded by transcript TVAG_010090A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98233.1" /translation="MSTRNEGLIPIISMSNSMIQKIIESNISCDATQGEGIIAYLIGD ISYDSPLGNPLIRITQVVEGIEAEDEVFPSKCGENQISIRYESFPEEMPEPDPTLLNE HIMDTVHTVFSQEKTIYKIVCYHYFQNNDSVFRFYFPFPTFKTTFEEIGESQKPTSFL AGSYPKLQYKATSKLIDAQISGAEGPDDVSIQPIIADLAARFPTTPIHLTIGNIIYNL HVQQQSTTKMFYATALVSDPSESISLCFGRISTKTDMRSDIQALGNQVMETKEDIKSI VEQMSSMKNEISELKSLITDLATVVKNITVVHPSALNSPQHTETAQPLVQSKSALSFR KKKSKDVAVRPTKPEEKPSPKRPTTISTPKDTDISPPKSFVTKIDNFEEPKVTAKVTN TKESNFEPKFEDVSEKPKPNIDQPSQDNSSLYQYLDISPNSSIKSGRQKTEKSDRKKD KLDFQPQYTSPQTSRYESITPQKTGIPESPQLSAEAFSIGSYKKSSLKRDFPQMIQEP SAKKVSPKISVSMGEQTQGTQQLFSILGIKDD" gene 22799..23368 /locus_tag="TVAG_010100" mRNA 22799..23368 /locus_tag="TVAG_010100" /product="hypothetical protein" /note="transcript TVAG_010100A" CDS 22809..23270 /locus_tag="TVAG_010100" /note="encoded by transcript TVAG_010100A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98234.1" /translation="MVKLVIQRAKSGSVTVDGKIVGQIGQGIVVLVGIHRDDKPEDLD WAVQKMLNYCMWPADDDKPWRKSVMDIDGGVLLVSQFTLYARPNGRKPDFSHSMGPEG ATQLYNLFVEKVKAAYKPEKIQTGEFGAMMDVALVNDGPVTMIFDTLNKKG" gene complement(<23500..>24444) /locus_tag="TVAG_010110" mRNA complement(<23500..>24444) /locus_tag="TVAG_010110" /product="hypothetical protein" /note="transcript TVAG_010110A" CDS complement(23500..24444) /locus_tag="TVAG_010110" /note="encoded by transcript TVAG_010110A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98235.1" /translation="MSDQDVNINQYSELRSICKCHIDSYNALYQLKTEKEEDLNSIYE MIKKNLIETNISTPTKIIRNIFEIIPYNNRYTKSYLYLAKLIIDFYHIKEINDLYIIS KYLFYKEYGIKLDKSANFVEISTENLDIHTENPIYKAIMYDDKQSFISFCNSNREEFN EYQTLKSKLYPISNKRYSDDGYSLLELCCYHGAIDCFNFLRTEYRQDITETCLELSFL GRNPAIMSECLKYQKPNEKCMRNAIISHNIDFVTFLMNEYNIEIDLSYCGWCHNLEAF LVYFDQTKDFYKSIVYSSGFNIPNLPKYIIQISKNQNK" gene complement(<25067..>25525) /locus_tag="TVAG_010120" mRNA complement(<25067..>25525) /locus_tag="TVAG_010120" /product="ankyrin repeat protein, putative" /note="transcript TVAG_010120A" CDS complement(25067..25525) /locus_tag="TVAG_010120" /note="encoded by transcript TVAG_010120A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="ankyrin repeat protein, putative" /protein_id="EAX98236.1" /translation="MEIDLFCCGEYYNPHALLIYLDQTHNIDNGLAYSPLFNNVKLCQ YLISHGADANAKDQNERNVLHSATWFNKKEIAKLLILNGADINAKYYDEETHLHKAVD FDNKEIAELLISHGADLNAKNDGGETSLQKAIDNEYKEMAELLISKVSNN" assembly_gap 27166..27265 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 28222..28295 /locus_tag="TVAG_010130" tRNA 28222..28295 /locus_tag="TVAG_010130" /product="tRNA-Arg" /note="anticodon ACG" gene complement(28324..29053) /locus_tag="TVAG_010140" mRNA complement(28324..29053) /locus_tag="TVAG_010140" /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase protein, putative" /note="transcript TVAG_010140A" CDS complement(28468..29052) /locus_tag="TVAG_010140" /note="encoded by transcript TVAG_010140A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase protein, putative" /protein_id="EAX98237.1" /translation="MVNIANAITLSRIPMLFMIVGFLYSKKPYSATIATIIFFFGAWT DWLDGYLARKLHICSSLGAFVDAVTDKIFMIGIFITMLLLNIVPHWTLFLIILILLRE FLITALRAVAATRSVVIAAEKAGKIKTVIQMVSSITLLVWFTFIKDYPDFLSTQITDG LHIFGIILFAIATFMTAFSGVKYIIDYRAVLVDL" gene complement(<29902..>30597) /locus_tag="TVAG_010150" mRNA complement(<29902..>30597) /locus_tag="TVAG_010150" /product="hypothetical protein" /note="transcript TVAG_010150A" CDS complement(29902..30597) /locus_tag="TVAG_010150" /note="encoded by transcript TVAG_010150A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98238.1" /translation="MNLNYEYIAAHISDYIQNENFFDTFDISDIKAIMKYSRLTADQY VSLLQQSSSSLTSKDIYISTRKANVTIQNFEDVVSILKIVKKYMKFNVFDGIIDFINE NNKQLLDSTKEIKKLQTEIKALQNQIQNASKETTTTQINESHNSSKEFLDKLSFLKET NDFYSVYKFFEELSSEGNREMISKACEEGLWKKTYYNENNVLHLASERGNLNLVKSLI ECGCDKEANDLYG" gene complement(<30974..>32869) /locus_tag="TVAG_010160" mRNA complement(<30974..>32869) /locus_tag="TVAG_010160" /product="Leucine Rich Repeat family protein" /note="transcript TVAG_010160A" CDS complement(30974..32869) /locus_tag="TVAG_010160" /note="encoded by transcript TVAG_010160A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="Leucine Rich Repeat family protein" /protein_id="EAX98239.1" /translation="MDEVFDIHEQDRSEIKQEEISAEVKQINLANNKFRTFPPDVFNH CYKLTSLILNHNEISNLEFLSCFKALLELDFRNNQIEVDDILAIKHIYILFLRSSNNG FNEKLRVHPLSFVVLLPRVWIFDGTFITDYIRNNAAKFRNTLAFSETVLNARRTKQIE SATMTSAQLVNNFLAGSKCNFGEPGLFITPQGSQVQQLTDHPQIKRIQYLAKNYPIEL QIGTFKDYFSLVLGILSKQWMNLPISYIPRLVARQYWGAVNQTITQLEEWQYWVLLLK ISENIKPETVVEKELWAAMRLKDYLQTGKSPKIGSIPRMIISSFLFRCLDSDESIKND DVTIYEVYRSHCGFTSLDESLDIIHQEILTTIQTEARQIPQKGETIAVTHPLKNKWVN AKVNGSYGGRVEVSLPECIFLMPISALFWDGRGVWREAKSRSVKLPSKSQNPTMNFTS ANGTGSAFITESITRGSEPQKQAKTLPPLDHHIPSSIVKPPKMRVAPSDSSPDLLQTL FKTGQKSPTKAASSLNTIAKTPKVAQFRGIPQPRIAARSHITRAAPKRKTDKMVTDVV NIVNGGYGSNGQNLRKFHVKMTNQVTNRSDYVWINEDEIPTEDVVKLLDIYADHIKSK MLIIEGH" gene complement(33175..>34826) /locus_tag="TVAG_010170" mRNA complement(33175..>34826) /locus_tag="TVAG_010170" /product="Ubiquitin family protein" /note="transcript TVAG_010170A" CDS complement(33207..34826) /locus_tag="TVAG_010170" /note="encoded by transcript TVAG_010170A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="Ubiquitin family protein" /protein_id="EAX98240.1" /translation="MEPDWKLIGENITNYIDNETFLSARKPPDICNILDNAKLSPHEF ITLFTNLSKYHGKSDMLVMLGHARKSELATQAEVDKISSTISSILGINILDKVFSFTQ NKTRQQNSNSQIQDEDKFINIYVNSFIGVYCPFENINLNTTIKDFKLKLQKESGIPAN KQLLYLGNFLLPNSGTLEKYLSPIKKDNVGARLCLHDGIAISFNKIQVPIDIDDFNIT VEKLKEKFYSKTGWPIKYQTMTYNGIIMDDNRTLNYYKIQRGSVNEVRIQYDISDLKG GQCIYIRLITVKTLVLYADIWNSTVFDLKLLICDSEGIFPRDQDLYYGGERHLEDNFK LIDYDIQRDSTIYLSRVMRGGKPVIYLYPKEEIDAKVSIKINNGEFSFVYPSFDEENT WNVKALPSGEIIHRGKKLRYLFWETLFYPILNMDKGFIIKGEESVSFFEDKLNSMNLN DTEICDFITYWCPKLCGYKYIKVCFQFENFDEMCPMNVEPKPDNINRVFFAALPLENT CDIEPQELPAFKRDGFTVIEWGGTIVTSEKY" gene complement(<35661..>36596) /locus_tag="TVAG_010180" mRNA complement(<35661..>36596) /locus_tag="TVAG_010180" /product="DnaJ domain containing protein" /note="transcript TVAG_010180A" CDS complement(35661..36596) /locus_tag="TVAG_010180" /note="encoded by transcript TVAG_010180A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="DnaJ domain containing protein" /protein_id="EAX98241.1" /translation="MLSFLSYFALSAVTRNGKRDFYDILHLKHDATTNEIYLSYKELS QKYHPDKNKGNEEISVLYTNVNDAYATLKDPLKRRIYDLYGEQGVHIYESPKKELDIN GNPITEENDLQAAVKRVGKTIRLQFPVDLIDFYKGREYSIKLTRRGMCRCPTEGFFCE KCRGRPTTRENTTLRLFVERGAKEGTIVTYKNQGDTSEENAPGNIEIMITSKKHPLFR RDGYDLHMNVNVTLKEALLGFTREFDHIDGSKLIVESKDLLRCGEDFRIPKRGLPVHN DNFEYGDVVVHTRILWPTNLSDAQKEELAAALKPN" gene complement(<37275..>37940) /locus_tag="TVAG_010190" mRNA complement(<37275..>37940) /locus_tag="TVAG_010190" /product="hypothetical protein" /note="transcript TVAG_010190A" CDS complement(37275..37940) /locus_tag="TVAG_010190" /note="encoded by transcript TVAG_010190A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98242.1" /translation="METILKDPQQVKEIMEEIHKMRRENADTWYNVQVELLKEVTKKH EAILKQEIDQSLSDYKENQMIDLMSQFDSLESNNKRDLEAYLQANPQRQELYEQISQK AKAYKGKKKIPPQRVQPPKCTFEDEVPNLLAILAENGVNLNDLVVFADNAFLFKGKIY DQGSEIYLQTRQRDNPIKAILHDITEFEITLEFVDKGLLTIATKEILNGSVEILNDVN NKK" gene <38100..>40790 /locus_tag="TVAG_010200" mRNA <38100..>40790 /locus_tag="TVAG_010200" /product="hypothetical protein" /note="transcript TVAG_010200A" CDS 38100..40790 /locus_tag="TVAG_010200" /note="encoded by transcript TVAG_010200A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98243.1" /translation="MSFDEKFNAESLIKQVHNFISGNQELSAAANQYLIDLSNNYKIQ FTNLCSTILNDIEANSQDINLFMATTIKSFFTENSTRTNAEIEDEWFSDTASQLNLRD TTKNALFSALISQDEGLRNLSAFSLAYICKLETTNFGSLETRFIELLTPTDTPEYYVI GIYNLFCQLLEQSFLENTMELDPPQIIPFLIERGFDSLTDEKLQITTKMQIFQYLDLI TEHYPQILYNQQFIDHILDCSFNIILFIMNDIEEKGKVTQILHLIYNIFTIYYHKDVN SWSKISEFLLISLNCTEEDHEHENQIYNEKIVRIEETLRQKKANSEEITKDDKWLLDR VQLENIHERKIPVLFFLQNISDFEWKILKQNPENCHFFIQEICEELLPRILHLMVPFD CDNENIEDIDDQEPSYFATNALNSLVKCCKVQIYPILEEIIKTKQIDNVLVYLNSISA LTFGPLMENTDRWLIDMAVNGEIKEMAMKGNKRIQETSLYSIWRILKTQKIQNDDDFL SVFEILKAHCGEEYLIRVRCTDILKEILEILMESNNELFDNVFEETYQITCDLAMTGT DERYYLIEPFKVLANVIVMMNETEENCTKLLNFTQICVKKVTGEDETQKPTIFTKTCY VILLASLCSKLKDILSDHAEEIFSCLMSCFTEYDLELWSDTVAAISFLIDKNKVSSSH YNRLLECFEVVRDNNDNKLKIVMLRLIGKYISLSNPCLSDDCLMFLEKLENIVQAENY SPDVMIGVLFALQQISKYFSFPKDDVLEKIILIIHKIGEYIPVNDPEKFETVGTLILA IFNILIVKLAKLKPDFAKNNYNDMGTFILYLFNNGITSNNVMFGCVNLLRAIGRYVGR KANVFLNKRSFIQILDFADNSDDANLRKLSEDTRHFITSL" gene <41199..>42212 /locus_tag="TVAG_010210" mRNA <41199..>42212 /locus_tag="TVAG_010210" /product="Deoxyribonuclease II family protein" /note="transcript TVAG_010210A" CDS 41199..42212 /locus_tag="TVAG_010210" /note="encoded by transcript TVAG_010210A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="Deoxyribonuclease II family protein" /protein_id="EAX98244.1" /translation="MLFSLLSTSLCSLQCKNNRNFGVDWFAMFKLPPIKDKNPNHATG MAFFYTDPSTSLAEATSDVGSKNGNPLYYTLSPMYSKDSEIGYMLISDQPPHRITNPS DTYAHKKGVLIYDKDNGLYLEHSVPRYPNDPQVTTEYSYPDTGTNFGQSMLCTSLTHE QINDWAYGMLIERGYVVSYNAPSFTDLKMPNLRKVIDGEWIEKEVKTKVTDIQLKTRS FKLFSKCRFWGLDLYHDLIAPTFSTNVISETWARGTGTMTSNCTGAYKANNILTVSLG DVSWSRMNDHSKWAVAGDYVCIGGINRQDKQLERGGGTWCMKDANFATLMRKSASEIE QCP" gene complement(<42731..>43474) /locus_tag="TVAG_010220" mRNA complement(<42731..>43474) /locus_tag="TVAG_010220" /product="haloacid dehalogenase-like hydrolase family protein" /note="transcript TVAG_010220A" CDS complement(42731..43474) /locus_tag="TVAG_010220" /note="encoded by transcript TVAG_010220A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="haloacid dehalogenase-like hydrolase family protein" /protein_id="EAX98245.1" /translation="MEGKILVTFDIDGTLMLAGNHGQDHRDSMKHALNVLYGINLCPS EFLKTHFAGYSDYKIVTECIMKAANEKEVTPEEVYKFYDIATEKFKEIHTGNTIVYPG VYKALENLSKHDNVIIGLCTGNIPGIGWTKLEKTNMAQYFDRRLGGLGSHPNRADILQ SVIDKAKELYGKIDRVVHVGDAMQDVQAALDVGALAVAVDTGSQKDKVFKQPSFVLEN LEVGMNDFMSIVLTGKTVSGADHIDQKFK" gene <43552..44433 /locus_tag="TVAG_010230" mRNA <43552..44433 /locus_tag="TVAG_010230" /product="HMG box family protein" /note="transcript TVAG_010230A" CDS 43552..44106 /locus_tag="TVAG_010230" /note="encoded by transcript TVAG_010230A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="HMG box family protein" /protein_id="EAX98246.1" /translation="MDDLTPISIQGMPNYGELNLENPAMSNLPQAEKLKIKRPPNAFL LFCRDKRQAARGENPDLKNVDVSQVLAEQWKNLADTEKLYYKALAAEQQKLFKEENPD YRYEKAKAKQLMNKMKLRPEFKQITNVLDVKTLLAMSVEDVKAYMLYLSSQVLPTANQ ATEQIQQNFQLDNFQANQQQLPPL" gene complement(<44719..>46155) /locus_tag="TVAG_010240" mRNA complement(<44719..>46155) /locus_tag="TVAG_010240" /product="hypothetical protein" /note="transcript TVAG_010240A" CDS complement(44719..46155) /locus_tag="TVAG_010240" /note="encoded by transcript TVAG_010240A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98247.1" /translation="MDEVRQTLLSEDQFALSSGIIGKYLSDPLVITQISTKNSSISNL TEYQITSILPRSNSYKGVLTKSGSVEVMKSSIDLSRFLIPTLSLSFIQKTKHEESESE KRLTKSRQNDFVGRGKTSYRLRPQHLFLEESIVGNTVFNRTHYLLMFGALGSMTVPSD DEDGTEEYVAQGTRFNPCGNKLDSLADEDNCTDYDLVTMAKYPGTYSSSQQQIVINFR LKFLHSLRETIRQFTEIPLKFDFDFHLSPEKFEFHPFDYSDFNLVISILTNLSRNSTS FRDFEQTSRLFITFLDFIKLGITYPNAKVHFVCGETLLIYIYILHLFIVNLSYGMRLS PYSLFDLLSRLQIYGFNSLFSEIEAESTILSKQLDIGGLYCLDLKEFQSLSVAASINN FRGLLTIANDCLMNGHDTAADIAVATSLCGSLYSIRISVLQPHSILINFSSFHRKAKY KSVFPLWNMHDNANKYASDTNEIIFLPW" gene <47986..>48360 /locus_tag="TVAG_010250" mRNA <47986..>48360 /locus_tag="TVAG_010250" /product="ribosomal protein L7Ae, putative" /note="transcript TVAG_010250A" CDS 47986..48360 /locus_tag="TVAG_010250" /note="encoded by transcript TVAG_010250A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="ribosomal protein L7Ae, putative" /protein_id="EAX98248.1" /translation="METVIEHGLHQINLSGNVAKGIRCTIKAILKGKARLVLLADDCE NKDYKNLVAGLCKKHNVKLQAVEKKELLGRALGLTHFKADGSVRRQMNCGACAIIRYG SVDTQELDEFRKAFDPAVEEQA" gene complement(<49919..>51067) /locus_tag="TVAG_010260" mRNA complement(<49919..>51067) /locus_tag="TVAG_010260" /product="hypothetical protein" /note="transcript TVAG_010260A" CDS complement(49919..51067) /locus_tag="TVAG_010260" /note="encoded by transcript TVAG_010260A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98249.1" /translation="MSTAPPTATQGRSQTMRSTGSSSPNNDMKNTTKRTTLTQSKLDD STFRLSKPPKICSTITPQSETYEKYSVRYFRDHPEEDDDLRDPKEKLMEIDGLITDDV EGDELFNLLVKQKCLRTMVYGESSQQVVNSHVAIGNYYQNTERPKSAIRHFQNGRQIA KNTEVTNESKAELLVGLAESHFELKESGKKNVSAAEAALSEAKSLDIDKSSLKFRRDY LAAKIARYNHEDTACDLYITAEKTMVDGCLDDENLETAEFYLEAAHTAFDAQNVEAAN KFAKEASKRFNSLGNSEKQNEAESLIQVQEEEEEHKEEQASGENNDQSQENNEKTGED SQEKEINQDEKDNNAKGEEEQEEEQKREERPSSLAIGSVIKDRVDDEM" gene complement(<51517..>52542) /locus_tag="TVAG_010270" mRNA complement(<51517..>52542) /locus_tag="TVAG_010270" /product="hypothetical protein" /note="transcript TVAG_010270A" CDS complement(51517..52542) /locus_tag="TVAG_010270" /note="encoded by transcript TVAG_010270A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98250.1" /translation="MNYAKSKILNAVNFIIVAVYLKSFIRFHFNPAVQLKFQIGKRSK IFDCVLYNSESHMLYNRIWRLQPYVDHFVVVSASLTFSSRKNNVSFYPFDKEIQALGD KIHLFELNLSANMSNWAREEIQRNSMLDFVKTLNPKEGDIIIAGDIDEIPTISGIEFM IQNPPVEDYYNTKYRFYNHNYNSMVKTTWGFTAVFKYSDKLPSYLLSTSRSTRHFVTK QYLGTHCSSCFHTLELYKNKYESFSHQEFNSYPFTNYSYIFWSHYCKKQMPWAKDLYK SKLDIHDLAPQDPRLRFLYDKDFILDINKTIYKEKDLKTLCKGKNSWWVNGKIGTLNP KYNISRN" gene <52734..53988 /locus_tag="TVAG_010280" mRNA <52734..53988 /locus_tag="TVAG_010280" /product="hypothetical protein" /note="transcript TVAG_010280A" CDS 52734..53984 /locus_tag="TVAG_010280" /note="encoded by transcript TVAG_010280A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98251.1" /translation="MNDSPPKAVIVYCIYCIVFILIWLLPYLTECIGITVADHLLVLP SNQKFFGSFPKKHVVGSKHLFSKCPLNPDDLLIDFTKIPNFASHNSPPRDIITNEQTV RYSSITNATFHHLRNLYVGSNLLTSNGTHIFRIGNDGSSSYWYRDQPGIVIANYTHVC AIGNVFSFYGHFFVDVVAPLMFIPEEYRNKSIIIINKLKPYKIEILTHLGFERKRLVN LQRNNWIYAENIYTLTPHPIFRYPGITYKNIGETLKKAYGVDKYKLCLYVVSNRAPSE IRKIKDFYYLVTCIRKQFPNYRWDIIPDKFKSFKEVALVYAQIKLIFTITGSNLVRIL FMNPGSVVVSAQLNFNDYNMQAMALSNGVKYIAYFDPRYDHTHHGYLELDHKDVMRVI KIGLYAAVNGTIPKNSTEYPYVKM" gene <56790..>57152 /locus_tag="TVAG_010290" mRNA <56790..>57152 /locus_tag="TVAG_010290" /product="hypothetical protein" /note="transcript TVAG_010290A" CDS 56790..57152 /locus_tag="TVAG_010290" /note="encoded by transcript TVAG_010290A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98252.1" /translation="MDAQNLANAQQPGQPNPENIPNEVRIQTAMANYGQVPTDVQMQT AMSNDAALGLPPWYANMRWKEFYTNPEVGYKQLYADDANTGVDPEYVFYQRRNRMYEL QLKNAMELNRKRKRLGGH" gene <57171..>57413 /locus_tag="TVAG_010300" mRNA <57171..>57413 /locus_tag="TVAG_010300" /product="hypothetical protein" /note="transcript TVAG_010300A" CDS 57171..57413 /locus_tag="TVAG_010300" /note="encoded by transcript TVAG_010300A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98253.1" /translation="MGFFSSIGNFFRNVGRGIWNGIKSVGRGVWNGVKNIGKRVGQFV GIIHKDPEPEEQAPVIQQPEPAPQSSWQPNPTPQPY" gene complement(<57418..>58266) /locus_tag="TVAG_010310" mRNA complement(<57418..>58266) /locus_tag="TVAG_010310" /product="hypothetical protein" /note="transcript TVAG_010310A" CDS complement(57418..58266) /locus_tag="TVAG_010310" /note="encoded by transcript TVAG_010310A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98254.1" /translation="MLPIEKENSRVATTKPLDELFTNVGQKFETDTVKHEGYRFDYPL RWLRDPSVTKAIGFRRMKFISEAIHGFPFTVGFEVRYYNKEKRMYEKFEQGKLLQVSL LINLETTLQAFQEKINDIYIEYANQYNIDEGEYHLDIIYDRKNATVKINKIEDLGENV YISTKYNNLAWYRFMRMLNQPAAYPVHPDYYEVENPNGTYENIFDQDAIIVHASFSGA QNSFLCLANDFYEKPTKLYEPPSGSISDFQVWFTTDGRKRIIPLYHAFYLELSFIYNY YRTVKI" repeat_region 58285..60021 /note="repeat family R372" mobile_element complement(60018..60170) /mobile_element_type="transposon:transposon-like, repeat family R11b" assembly_gap 60421..60520 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" repeat_region 60784..61008 /note="repeat family R31b" gene <61056..>62954 /locus_tag="TVAG_010320" mRNA <61056..>62954 /locus_tag="TVAG_010320" /product="hypothetical protein" /note="transcript TVAG_010320A" CDS 61056..62954 /locus_tag="TVAG_010320" /note="encoded by transcript TVAG_010320A" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98255.1" /translation="MDRKSARRKAELQRYGWRVSKNFKYRKGRPIKVYDKLAGLRYEM DLETARANYPNRLERLEEERLMDMPFDVSEPQVEGHDGFARFYWKHDEQLHPLRRKKG SAEDGHAPMERTKYAYEKYREVRSQITSGRTFTVNFDEGKNKEGFMGVLAAIQDGNKK GHNLRLTITDLDGHIYYAHGNEQTAAKLLDAFKTTKREQMVDSDSDILNAIEGIASVK FEWYQPNPQAVRQHAGYFPFINKSDIDLTRYGIYNSIETIVNEPCILTCLRNSGLVTD EKMKYLESCVKTRYILRGQLAKIAPLANVNIRVNIPTAKGSSHDDYVVEFNLPWLKIV IVHNHFMLNESLTNPLFGKGKCNIVRAVNILFKKGLLEPIPDDKLTETFVPKDETNFS LLARPKVVPDKVLVQKKYTVPQGVGMFGYQPEPEELPMRLQELQDAINKLPLRHPIDV KLYWRASELSQKVLYETGCFDDVYEITGEVSQKIRDSLEFPQTGPIGCDKFDSDEKIY YVDLNAAYMRFVQYIPTGIPNEDGEFPGRNYTVGKVIQQLYDIRKASNPKLAMTLKLL MNSTWGYSIKKPQEMKSKHYEKVDNFVERFSPFVLKYEFTQGQSGLVTTLKPMSNMVL PSVRKGSP" repeat_region 63025..63192 /note="repeat family R31b" repeat_region 63845..64258 /note="repeat family R1569_R581_R22b" gene <64651..>65502 /locus_tag="TVAG_010330" mRNA <64651..>65502 /locus_tag="TVAG_010330" /product="hypothetical protein" /note="transcript TVAG_010330A" CDS 64651..>65502 /locus_tag="TVAG_010330" /note="encoded by transcript TVAG_010330A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAX98256.1" /translation="MLVEMKSFIPSSYTFETEIQKIKQELLTSNLDCSAKDETNEEYL YEMQDIIDHLPKLPEIQQQKLTIPEFDEIEVKPTDSVEIKKFIRKVNYEFLGFHCNHK VMDKDCDMVYKNISDIYKSEEFKTYDNFVSLVAECVWEIRDKDRRGKVWNKQIRPAMF EMKRAIDALVVLAGFISMYNAKMNPQCSKCKAAIRKYNYSVKEIERMRNDYADLKKEA EKPAEDKMDMLAFLNKNYPTADDFLLSDVKKKYKETFGIVKTFDVLKEEIEATKLFKG MNHRNIYH" CONTIG join(AAHC03000964.1:1..27165,gap(unk100),AAHC03000678.1:1..33155, gap(unk100),AAHC03004906.1:1..5002) //