LOCUS       DS113644               69454 bp    DNA     linear   CON 15-DEC-2022
DEFINITION  Trichomonas vaginalis G3 strain G3; ATCC PRA-98 unplaced genomic
            scaffold 1047229023393, whole genome shotgun sequence.
ACCESSION   DS113644 AAHC03000000
VERSION     DS113644.1
DBLINK      BioProject: PRJNA16084
            BioSample: SAMN02953626
KEYWORDS    WGS.
SOURCE      Trichomonas vaginalis G3
  ORGANISM  Trichomonas vaginalis G3
            Eukaryota; Metamonada; Parabasalia; Trichomonadida;
            Trichomonadidae; Trichomonas.
REFERENCE   1  (bases 1 to 69454)
  AUTHORS   Carlton,J.M., Hirt,R.P., Silva,J.C., Delcher,A.L., Schatz,M.,
            Zhao,Q., Wortman,J.R., Bidwell,S.L., Alsmark,U.C., Besteiro,S.,
            Sicheritz-Ponten,T., Noel,C.J., Dacks,J.B., Foster,P.G.,
            Simillion,C., Van de Peer,Y., Miranda-Saavedra,D., Barton,G.J.,
            Westrop,G.D., Muller,S., Dessi,D., Fiori,P.L., Ren,Q., Paulsen,I.,
            Zhang,H., Bastida-Corcuera,F.D., Simoes-Barbosa,A., Brown,M.T.,
            Hayes,R.D., Mukherjee,M., Okumura,C.Y., Schneider,R., Smith,A.J.,
            Vanacova,S., Villalvazo,M., Haas,B.J., Pertea,M., Feldblyum,T.V.,
            Utterback,T.R., Shu,C.L., Osoegawa,K., de Jong,P.J., Hrdy,I.,
            Horvathova,L., Zubacova,Z., Dolezal,P., Malik,S.B., Logsdon,J.M.
            Jr., Henze,K., Gupta,A., Wang,C.C., Dunne,R.L., Upcroft,J.A.,
            Upcroft,P., White,O., Salzberg,S.L., Tang,P., Chiu,C.H., Lee,Y.S.,
            Embley,T.M., Coombs,G.H., Mottram,J.C., Tachezy,J.,
            Fraser-Liggett,C.M. and Johnson,P.J.
  TITLE     Draft genome sequence of the sexually transmitted pathogen
            Trichomonas vaginalis
  JOURNAL   Science 315 (5809), 207-212 (2007)
   PUBMED   17218520
REFERENCE   2  (bases 1 to 69454)
  AUTHORS   Carlton,J., Miller,J., Delcher,A.L., Schatz,M., Schobel,S. and
            Fraser,C.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2005) The Institute for Genomic Research, 9712
            Medical Center Drive, Rockville, MD 20850, USA
FEATURES             Location/Qualifiers
     source          1..69454
                     /organism="Trichomonas vaginalis G3"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1047229023393"
                     /strain="G3; ATCC PRA-98"
                     /db_xref="ATCC:PRA-98"
                     /db_xref="taxon:412133"
                     /chromosome="Unknown"
     gene            complement(<749..>1663)
                     /locus_tag="TVAG_296110"
     mRNA            complement(<749..>1663)
                     /locus_tag="TVAG_296110"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296110A"
     CDS             complement(749..1663)
                     /locus_tag="TVAG_296110"
                     /note="encoded by transcript TVAG_296110A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99227.1"
                     /translation="MLATTSPNSLVMNPTSMLVEMKSFIPSSYTFETTIQKIKQELLQ
                     GDLDCTAKDETNEEYLYEMQDIIDHLPKLPEIQQQKLTIPEFDEIEVKATDSVETKKF
                     IRKVNYEFLGFHCNHKVMDKDCDMLYKNISDIYKSEEFKTYDNFVSLVAKCVWQIRDK
                     DRRGKVWNQQIKPATFELKKTIDALVILAGKVSEYNAKMNPQCSKCKAAMRKYNYSVK
                     EIERMRNDYADLKKEAEKPAEDKMDMLTFLNKNYPTADDFLLSDVKKKYKETFGIVKT
                     FDILSEEIEATKLFRISNIHRTIHVKRL"
     repeat_region   complement(2000..2860)
                     /note="repeat family R321a"
     mobile_element  complement(2897..3481)
                     /mobile_element_type="transposon:transposon-like, repeat
                     family R2375"
     repeat_region   complement(3550..5688)
                     /note="repeat family R31b"
     repeat_region   complement(5734..6318)
                     /note="repeat family R31b"
     repeat_region   complement(6498..6653)
                     /note="repeat family R31b"
     repeat_region   complement(6673..7074)
                     /note="repeat family R31b"
     repeat_region   7642..8049
                     /note="repeat family R11b,R31b"
     gene            complement(<8046..>8438)
                     /locus_tag="TVAG_296120"
     mRNA            complement(<8046..>8438)
                     /locus_tag="TVAG_296120"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296120A"
     CDS             complement(8046..8438)
                     /locus_tag="TVAG_296120"
                     /note="encoded by transcript TVAG_296120A"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99228.1"
                     /translation="MNSTRPEVVLGLGTWTQIVDRFLYCANSSKETGGSKTISGENLP
                     AHSHYVDLSTSQAGWHKHRFWDWSAMKKGKGYDVKDNVQFAINCFWGSTQGEGNHTHR
                     VSGYTQTTGQSKDYMPPYMTVYAWYRNA"
     assembly_gap    8547..8646
                     /estimated_length=unknown
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<8881..>10320)
                     /locus_tag="TVAG_296130"
     mRNA            complement(<8881..>10320)
                     /locus_tag="TVAG_296130"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296130A"
     CDS             complement(8881..10320)
                     /locus_tag="TVAG_296130"
                     /note="encoded by transcript TVAG_296130A"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99229.1"
                     /translation="MNPMTDEFLFQDSKNHTVCVNPTKGTLNEKPIKELLLKADVDNK
                     ADKEYVIEKVQEEHDRADATYATKEHTHPELADKTYVDNKMSSEVTRAENEYSKKTHI
                     HTIANITNLQETLNRKSDVGHTHTIANITNLQETLNRKSDVGHTHTIANITNLQETLN
                     RKSDVGHTHSISEITDLNVSLEKKADKTYVNSELEEKVDRGCVASALVKKADKEYVDE
                     KDEEIKKMVEWYHERTSKILKTKADTGWVSGCLDLKADKNHTHTSFTTVRADDIILNF
                     DLGSSAPLENPSTSVKDTLNILDKSCRNIEDHARNFEAYELPTMLDKKADKTELQTLK
                     TEILQTLYPIGSIYTSMNSTRPATVLGFGEWKQIVDKFLYCARYSKTAGGSKKITEAN
                     LPPHTHTGTTNFSGDHIHSLRDHPLYNSEYYAGYDVLSPDYNHSAKKTFRQTEPGGNH
                     QHTFTTNPTGLGKDYMPPFITLFAWYRYA"
     assembly_gap    10372..10471
                     /estimated_length=unknown
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            12625..13894
                     /locus_tag="TVAG_296140"
     mRNA            12625..13894
                     /locus_tag="TVAG_296140"
                     /product="Clan CA, family C19, ubiquitin hydrolase-like
                     cysteine peptidase"
                     /note="transcript TVAG_296140A"
     CDS             12641..13870
                     /locus_tag="TVAG_296140"
                     /note="encoded by transcript TVAG_296140A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="Clan CA, family C19, ubiquitin hydrolase-like
                     cysteine peptidase"
                     /protein_id="EAX99230.1"
                     /translation="MDTVVMWNGKTFNVKCDPTLPVDAFLQKLQNLTGVPVLKQTLMM
                     RRKQLKSGMSFPAGEVKEGYKFMLIGTAQIAPVWKDFKEEIVEEAPDEADEAATPADA
                     MVGCKNYGNTCYLNSCLQTLRNIPDISKVIKEYKPDGKGDDLITAIAKFFNNPEQEYN
                     RPTVVESLRIAHPDPYAAKDDQTGGYMQQDATECMATLFKHFSTAFGPKFTDLFNMRL
                     KTIVSDPTGEKPPKVTYSEDNSIDCHIDENVSSIEMGMFKPSDIESTEGGKIAVYHQV
                     QQLDSLPKFFTVHLLRFTYREDEKTTAKILRRVNHPFRLDILSFASDELRAQIAKARE
                     SDQTKGSGFYQLKAVLTHQGRSANSGHYITHVKVNDEWIRYNDEKVSVVTEEDIENLK
                     GSGDWHCSFLLIYQQIE"
     gene            complement(<13985..>14233)
                     /locus_tag="TVAG_296150"
     mRNA            complement(<13985..>14233)
                     /locus_tag="TVAG_296150"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296150A"
     CDS             complement(13985..14233)
                     /locus_tag="TVAG_296150"
                     /note="encoded by transcript TVAG_296150A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99231.1"
                     /translation="MSVSSKREKFNQYLAAGKVVETLERAMKSLQEQSPRPEDPLAFI
                     REVIGAPPAQNVDALVRKNQQLRTRVIQLKNLLSLPSI"
     gene            <14317..>15333
                     /locus_tag="TVAG_296160"
     mRNA            <14317..>15333
                     /locus_tag="TVAG_296160"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296160A"
     CDS             14317..15333
                     /locus_tag="TVAG_296160"
                     /note="encoded by transcript TVAG_296160A;
                     Identical to: GlimmerHMM gene prediction Covered by:
                     TigrScan gene prediction"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99232.1"
                     /translation="MDSTLNLEFRDLNEQLRSWNSAIIRMNQSIESNGDFIRALPVIN
                     VLKESADDTVKDDSVRLLDKLPYLDFENTQKPLKIRFFVENKDETVVLDQYKLSLLSN
                     GWTSSKSSAIKFDRNQKIVGFSGNSYFFCIDPVLRAVICSWYCPSKSAPNFVVDFGWN
                     DKYVALSMEDNFIRIISMSTNIVEYEFPSIIDQPNLIRISDDSEHLFVCNNVGEVAIQ
                     KLHPPFKIVMKFQLDFTPSDAFFSEDNVVINDGKSEYKISLNAKTIDLAGRVKKKSSL
                     KVYVSDGRLFLEENKQSCEIHTNGIPVSCASIQKQQNPLIVASTVEGGIYIWQLMEIP
                     SMDN"
     gene            complement(15509..16082)
                     /locus_tag="TVAG_296170"
     mRNA            complement(15509..16082)
                     /locus_tag="TVAG_296170"
                     /product="ribosomal protein L22, putative"
                     /note="transcript TVAG_296170A"
     CDS             complement(15576..16070)
                     /locus_tag="TVAG_296170"
                     /note="encoded by transcript TVAG_296170A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="ribosomal protein L22, putative"
                     /protein_id="EAX99233.1"
                     /translation="MSTHYTFSNVEESKALKASTGLERVHFKPMMETGRVIKGMKAQD
                     AIAYLEAVMRKERAVPFFRYKGGISHHAQGHEWGCPTSRWPVKCAELYIKLIKTALAG
                     APQKPGVNVDEVLVAHVQCNRATQYRWRRIHQAHGRVKSYASPPTNVQIVLAEKAAIK
                     ERSQ"
     assembly_gap    17775..17874
                     /estimated_length=unknown
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <21948..>22721
                     /locus_tag="TVAG_296180"
     mRNA            <21948..>22721
                     /locus_tag="TVAG_296180"
                     /product="ankyrin repeat protein, putative"
                     /note="transcript TVAG_296180A"
     CDS             21948..22721
                     /locus_tag="TVAG_296180"
                     /note="encoded by transcript TVAG_296180A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="ankyrin repeat protein, putative"
                     /protein_id="EAX99234.1"
                     /translation="MLSKVLKDPLIKACEEGNLGLIKSLIEGGNYKVESLDSPLICAS
                     REGHLEVVKYLISVGADKDAKDNIFGYTPLIFASQNGHLEVVEYLISVGADKEAKNNI
                     FGYTPLIFASHYGHLEIVEYLISVGADKEAKDNTGSTPLIYASKHDHLEVVKYFISVG
                     ADKEAKNKNGSTPLIFASENDHLEIVEYLISVGADKEAKGGVGSTPLIFASSNGYLEV
                     VKYLISVGADKEAKDNNGKTALDVARGSVKEYFLEDKTE"
     gene            <23341..>25908
                     /locus_tag="TVAG_296190"
     mRNA            <23341..>25908
                     /locus_tag="TVAG_296190"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296190A"
     CDS             23341..25908
                     /locus_tag="TVAG_296190"
                     /note="encoded by transcript TVAG_296190A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99235.1"
                     /translation="MDDVGEIIQASLQLNSTNTEEVQVANDFLCRWQKEHDSLMMALE
                     ILKTNQQVSPQVVACSAIKYHAKTDWFDFLQEERREVRDFLLKICQENSFSYPISKKF
                     IDRTIALIGIVEFQSWETFFIDALSLPTFDVLLNFTSILSATNLIQNSEKQIIRYSYT
                     QFFPNFIELLLNKMDLTGLEILTKISAFLPMELLECSNFFRILCTTYIHDQTFQKEVM
                     RIIYSFICLRPDASQYFTQFEDVLLPNILLACETSTTPITCLASIIHQQGISFYITHL
                     DNEEAILIFRKSLFVLSDSLKFIGITRLYWTLWSTMIDYFALDSSSDFLVEFYPILFD
                     NFVKIILLENEGSFAITPQAILAVQKLYQASPEIITTGLENLEMSSNLIGILTALQSL
                     MNQSTVEQHISDFFEYASTTEDSEIYVALLLCLQNSPQHISSSQVLQEIFVNVISFAV
                     ETEDEQISNAAVTMLVNFNANYPEVVCHGPLLQQLYEIINLATAYSKTVSELFILVVR
                     GIRRVKKSIPVQVLTKITQGPLQQFVNLAGNIETISDEDERSYAISLLSLVQVIVAEA
                     KEIAISIGEIVVSTALNLITTLKDYIQGNDKIIDYSFRVLLSMILSSPQDRVLSDTTT
                     AVKVLAAIPEFSGYAMRVFALIRKQHLSISSLFEEIFHNFINPAIEDMGEDSIEAFNC
                     LREFHFIQICEDFPTDLVKSAISNIPFHGISTVITFIEDMFHSCPPGKMKNLLEKDGS
                     EIIDIITTIITDNFYDRFFSIAMGLYCRFIYYSLKFNISITDILVEMFARKMAVVDNS
                     SIVEFVNLNMRNCTDVQTMATNLWKLRTLNMCGGMTPQEDQPIDEEPIDLDISTLSI"
     gene            <26831..27996
                     /locus_tag="TVAG_296200"
     mRNA            <26831..27996
                     /locus_tag="TVAG_296200"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296200A"
     CDS             26831..27994
                     /locus_tag="TVAG_296200"
                     /note="encoded by transcript TVAG_296200A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99236.1"
                     /translation="MVLLEAHEKDLLKKWIIAKAKEIITDGIDPQILANYLMNLINRG
                     VQYPEMVSTLVDIIGEDEATLLTDKLRECIESGSYKESEKPKEPAPQPKPAPKEEKKP
                     SKPQPVEQKPKPQPKKSEESKPDYKKKEEPRYRSRDDDRPYQRPQKDDREKKGKYDKY
                     EDRDKKGKYDKYDKRDKQDKQEKQKYEKPQKKDYRKRYSSDEETEYSDEEKDTQKRQL
                     SLEDEPELKPKAKAERFIIFVAGLNEEYNSIGRIFKTFSKFGRIAGIEEDHEDGVCFI
                     EYSKLAYAYRAIKKGAKITGNSFLRVDWGTHPNPEAIAALEKELEQKKLNWEKQNEIK
                     TEKNSVLAELNTQRDLKIKQYAETPDSNNDEKDKIAQEILEIEKMIKECEQIE"
     gene            <28770..>30293
                     /locus_tag="TVAG_296210"
     mRNA            <28770..>30293
                     /locus_tag="TVAG_296210"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296210A"
     CDS             28770..30293
                     /locus_tag="TVAG_296210"
                     /note="encoded by transcript TVAG_296210A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99237.1"
                     /translation="MSLKSIDDISQDEKAKIKNFMLNTDMRQYVREFLAQRLGYKQGI
                     SKPSIEIPQPTILQPPPDGSHAFQITILSARSFLRFLNPDPSSKLVLDLNIAGRRFRT
                     KPAEADADPLITDVIKFNTNQDFDTISKTGKATLCAVVLAGDASGVYASGSFEWRTAL
                     ISPNNFAIQLYDPRGDADGVVNIRIEVSPSMCTQDDIDDVFNSETQKNFSIIAPITSR
                     LIPTPYHALRFCSLLTHGNFAVSATAKIVPDQREENNERECILRRSFSIHSLLASRSG
                     TPQEICFLLCSLLCGFGMNAFVSGREVITFHEQNKAFSWDSITGKKVPILNLEPRIMI
                     GLNTKLEPATQKLTTAIDDPRIWRRADLPHYAPPITLSQCNKIDIERIENELKRKICL
                     ERRQKVTSFDRNLENALRPLLFSSENQKLNNGNDSWKPHVQYSIAHLIPKFSTFRMET
                     MCVGSVNENAIFFTIRDKWAEMLNSNSEKFALVVGSFPYAEDVCATWVMLGNIVMLK"
     gene            31123..31774
                     /locus_tag="TVAG_296220"
     mRNA            31123..31774
                     /locus_tag="TVAG_296220"
                     /product="Respiratory-chain NADH dehydrogenase 24 Kd
                     subunit family protein"
                     /note="transcript TVAG_296220A"
     CDS             31130..31735
                     /locus_tag="TVAG_296220"
                     /note="encoded by transcript TVAG_296220A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="Respiratory-chain NADH dehydrogenase 24 Kd
                     subunit family protein"
                     /protein_id="EAX99238.1"
                     /translation="MLASVNTSRFFARLNKKSVLIQKDFKFSDQSKVDAILAKYPKEN
                     KRAATIPLLHLGQRENGGYLTTGVLQAISKIVGVTAGRVHETACFYSMFRFQPPNNHI
                     VEVCKGLSCYLTGSDNVKEAIQKATGGTFKEGKSPDGQFTLEEVECLGACANAPVMIL
                     DGVYYQNLTAETAKIIIECVKAGKSVKELDAVHTHPPRPLP"
     gene            complement(32094..>33046)
                     /locus_tag="TVAG_296230"
     mRNA            complement(32094..>33046)
                     /locus_tag="TVAG_296230"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296230A"
     CDS             complement(32120..33046)
                     /locus_tag="TVAG_296230"
                     /note="encoded by transcript TVAG_296230A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99239.1"
                     /translation="MSQDFDAGVLPFAFFRQCELDYNKLVHKPAKSEEDIATLTNLIS
                     RLEKVWDHFRVGKFYSRNEELDEYSNSTLRFFMIPFYIGRLHLNFQGTERPAHLEAAA
                     AYLTAFSDQMVQFKIAQKELPPPSNPTERRNRAVSEYNERRELEQRIARMSELTKPGE
                     ERGQLGDQVDEHAEREAIMDLLKLSVIEARSSARSANDELPFAKMHAAGIKPEEPKEP
                     PRKPWFQRIDREQMRNKVFAPLEDVMPRELPPDDETFAQPGAPPPDINSENEEEREKA
                     RKKRAEWDDWKDDHPPFSVDSSSDWYTSAKKK"
     gene            <33699..>34292
                     /locus_tag="TVAG_296240"
     mRNA            <33699..>34292
                     /locus_tag="TVAG_296240"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296240A"
     CDS             33699..34292
                     /locus_tag="TVAG_296240"
                     /note="encoded by transcript TVAG_296240A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99240.1"
                     /translation="MQSDLELAWGYIKYRNVDALKKLLKGDVPQQAAISDQSNDIRYL
                     VHAAAAFGSVDCLKYLAECGADLNVDTPSGYSCVHWAAYGGWVEILQYLQTRNIPLNK
                     ADLTGQTALHVAAARGHLNVVKFLITSKLSININQTAQYKWTPLHFAVAYGHTNIARY
                     LIENNASIKEVDTLGRSPEVLAHEYNRNWQLILNPSV"
     gene            <34930..>35394
                     /locus_tag="TVAG_296250"
     mRNA            <34930..>35394
                     /locus_tag="TVAG_296250"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296250A"
     CDS             34930..35394
                     /locus_tag="TVAG_296250"
                     /note="encoded by transcript TVAG_296250A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99241.1"
                     /translation="MSHPLSLIWSVFYKIENEEEPEKAGLHTLGRFESLEQFWDLYTH
                     LKKPNEVPDLLVGFFNKSFKMDPFDPNLENGGILMIPIPKELLLYQWERLIFAGVGGR
                     LDKGVAGFTLKYNEAIISIWVQDKRLMDFVEDNIVDVLGIDDDVQITRASIT"
     gene            complement(35790..>36225)
                     /locus_tag="TVAG_296260"
     mRNA            complement(35790..>36225)
                     /locus_tag="TVAG_296260"
                     /product="nuclear transport factor 2, putative"
                     /note="transcript TVAG_296260A"
     CDS             complement(35827..36225)
                     /locus_tag="TVAG_296260"
                     /note="encoded by transcript TVAG_296260A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="nuclear transport factor 2, putative"
                     /protein_id="EAX99242.1"
                     /translation="MSQDSAALEEFGNQFVKWYYNKFNQVKEDIIPLYRPESLVTFQE
                     NMITGLMPNGRLSIEDKILSESLKYMMKSPTTWTIQPSISNTVLICVQGTCKMTPEEA
                     EELGFFENFIIGMEEGNFVILNQIFSTSSV"
     gene            <37871..>40210
                     /locus_tag="TVAG_296270"
     mRNA            <37871..>40210
                     /locus_tag="TVAG_296270"
                     /product="ankyrin repeat protein, putative"
                     /note="transcript TVAG_296270A"
     CDS             37871..40210
                     /locus_tag="TVAG_296270"
                     /note="encoded by transcript TVAG_296270A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="ankyrin repeat protein, putative"
                     /protein_id="EAX99243.1"
                     /translation="MFSNFHLNQACQEGNLGLIKSLIEGGNYKVESLDSPLICASREG
                     HLEVVKYLISVGADKEAKDNHGYTPLIYASIYGHLEVVEYLISVGADKEAKNKFGSTP
                     FISASRNGHLEVVKYLISVGADKEAKDHFGYTPLIYASENGYLEVVKYLISVGANKEA
                     KNNPGYTPLFCASRNGHLEVVNYLISVGADKEAKNNDGDTPLIWASEKGKLEVVKYLI
                     SVGADKEAKDTTGSTPLIWASREGNLEVVKYLISVGANKEANSYDGTPLIYASREGHL
                     EVVKYLISVGANKEAKNNPGSTPFISASRNGHLEVVKYLISVGANKEAKDNTGYTPLF
                     CASEKGKLEVVKYLISVGADKEAKDTHGYTPLIWASQQGNLEVVKYLISVGADKEAKD
                     NTGSTPLIWASREGHLEVVKYLISVGANKEAKNNPGYTPLFCASRNGHLEVVNYLISV
                     GADKEAKDNHGYTPLFCASEKGKLEVVKYLISVGADKEAKDNTGSTPFISASENGHLE
                     VVKYLISVGANKEAKNNDGYTPLIKASANDHLEVVKYLISVGADKEAKDNNGWTPLIE
                     ASSNGHLEVVKYLISVGADKEAKDNHGYTPLIKASANDHLEVVKYLISVGADKEAKDN
                     NGWTPLIEASSNGHLEVVKYLISVGADKEAKDNHGYTPLICASRNGHLEVVNYLISVG
                     ADKEAKDNHGYTPLIWASQQGNLEVVNYLISVGADKEAKDNTGSTPLIFASENDHLEI
                     VKYLISVGADKEAKNNNGWTALDVARGSVKEYFLEDKTE"
     gene            <42477..>43889
                     /locus_tag="TVAG_296280"
     mRNA            <42477..>43889
                     /locus_tag="TVAG_296280"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296280A"
     CDS             42477..43889
                     /locus_tag="TVAG_296280"
                     /note="encoded by transcript TVAG_296280A"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99244.1"
                     /translation="MVSYISFYFSLGNFNLLNNELEIPQEVIAAKIFNRYINDISFGL
                     FKTEIKKAIFDFTNCHESMEYLCKTSYPSDFLKTFKDLPPKKIIYMALMQIMFQNSTT
                     KTQFFNIIHDELQGNADLERFQFILHMMTGFFCGSLSVEQWKQLYLFSIDNLVNSFVE
                     ISNSDEYSLLLGFLHTMTKNFPKSNPFFEHRKPEYTFIKTMFSLLTNIMNQISKNLQK
                     IEIDETIFKYDVSVSVMTSNNDTMVDHVTSDADEYWIQFSEVLEIINSIISVPRVNFG
                     ILKLYNDSSIMDFLQIVMKYLSMTSKISLLSFPRLLHSIASFLSYIVPYYSKEIFLSE
                     IYPEIIYFLRILFLSSETTDIDISCSILCQLAPLEYSNVRQHLVLAINSVANGKMSEL
                     LANFICLVVDNDREFFLQFIQSIANDFRDYSQNIIQTLSHFLENDSPTRRLRHFYNDV
                     PNMCILIEEAPSLHDYFNSF"
     gene            44603..44674
                     /locus_tag="TVAG_296290"
     tRNA            44603..44674
                     /locus_tag="TVAG_296290"
                     /product="tRNA-Asp"
                     /note="anticodon GTC"
     gene            complement(<44850..>45572)
                     /locus_tag="TVAG_296300"
     mRNA            complement(<44850..>45572)
                     /locus_tag="TVAG_296300"
                     /product="MTA/SAH nucleosidase family protein"
                     /note="transcript TVAG_296300A"
     CDS             complement(44850..45572)
                     /locus_tag="TVAG_296300"
                     /note="encoded by transcript TVAG_296300A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="MTA/SAH nucleosidase family protein"
                     /protein_id="EAX99245.1"
                     /translation="MTTIAFLCALKEEEEAISKKFQETCEAKVEKISSYTFKVFTKGN
                     VKIIITICGCGKVNASITATLTIVTYKPDYVINCGVAGGFDKQQKILDWVISTNFVYH
                     DVDIECLGFKPGQLLGEPTEFDASAKLVNLIKELEKENKFPMNIFYGTIASGDQFVST
                     DDQVQRIQKKFPSVICVEMEGCAIAHACSKFNVPVLAIRALSDIAVSEHDNSVDFTRT
                     CVVASERAANLAYLIVENFNAK"
     gene            complement(<46183..>47982)
                     /locus_tag="TVAG_296310"
     mRNA            complement(<46183..>47982)
                     /locus_tag="TVAG_296310"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296310A"
     CDS             complement(46183..47982)
                     /locus_tag="TVAG_296310"
                     /note="encoded by transcript TVAG_296310A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99246.1"
                     /translation="MNINDLLSHFKDPDELGKIIDDVKSSQDKNDLFNLIFQASEKIA
                     LPERIYIQTLQDNFNEKLLQRALLDYPSSLNLILMKLEHSEDKLKVIKDAITQIGTFS
                     PEIWDKYREISPDNSDEIFKQELSCLIIDRDVIEMENMDLDVELNEDSQKIIDLLQIH
                     HFDFTKISTAIAFVRDFPSITNFEWCLNYHPYNQTIWQSYLTIYPNDKNISDRSIRFC
                     FKSGRIWAMRLLFDQNIDFNNYKYIDNALDGRILIGKLCSLDPENTEFYVNNILKLKV
                     FQETDCFVTACIILDEYYIANNKKSERRNILFNLTEKFPQRSDLWLRRIEFERNFEPN
                     IENVRKIYENAFRILQNDKSRLIDSWMAFEAERGNDFDRILLCLTELEAEKELNSKKN
                     EISEDHDNKTVFVTGYDSNTTTRDDLFNFLSEFGEIKRLTMKNKFSFCEYAKIEDADN
                     AIKNCQNKLFNDAKVSISPHVNKEKHTLYIRYDPKSDIQTLVNFLKQKSGVNNITYRF
                     AKNNKDEINDSGLEKRGWGFLDVNSETDANKLLLMNGKLFNNFALRVEIAKHNKKEAF
                     DIKKSKPPKIPQPAPKVYNKEKNDEEAKKLFGF"
     gene            <48626..>50596
                     /locus_tag="TVAG_296320"
     mRNA            <48626..>50596
                     /locus_tag="TVAG_296320"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296320A"
     CDS             48626..50596
                     /locus_tag="TVAG_296320"
                     /note="encoded by transcript TVAG_296320A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99247.1"
                     /translation="MSMMKPQINRKKKLVEFRPHEKTREENAMKLHEETQKKWDQIAN
                     NLAKKIGRDPTTLAMNSDDMFRRTNEERFLIAQVINALSTKDAGVWKLNPRIGDLYAQ
                     VEKPNLANFESIGNPESVDAAKGARPFSWFSSPYYKKLSKQLKSHIEKIKPFEPNFSR
                     LVVVGRPINEEIFEKLPEVQGDTEIIVEEHHEQSEEVKSVVKANIDTNRLFFRATPGV
                     TQAKTVEVTNEGTSAIYYKWELAHDIDLMIGSGSNRTPLRKPVSPNNDVTDNFDWRIS
                     DSFIMPKDMQPKTRSEFLFTQIRGSILPGKSMTFSFSFKSDIPGCFTQRWVMRTTPAA
                     ESDSPLTIHLRGCCEVDPPDLTSFRKSIDESLHESERTRCVEEILASVFERVEQITQS
                     RNVKTEEQIEGDLLVDDRAPKFDSANSVWGVKYSPALYESLLAVAEESWDALGITGFE
                     RFWDYSLTSLTKLIMKVQDGEKKRHLLSKVNEIVRMNMTQSAAGSLSYSIAYVQLSTM
                     FEDLPDIFNHEASIRDIKLNPFVAPKQAENANEDELESTRRKHKRSVKETKKPPPKKG
                     SNKKGAKEEEQTHQQNSQLAMQKTITTADMPPELHAALVAAVKEQLKKKINVFEQLAG
                     ESSGVAKQLTRINEVDRLDTDLDAEVEEDDEI"
     gene            <51873..>52472
                     /locus_tag="TVAG_296330"
     mRNA            <51873..>52472
                     /locus_tag="TVAG_296330"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296330A"
     CDS             51873..52472
                     /locus_tag="TVAG_296330"
                     /note="encoded by transcript TVAG_296330A;
                     Probable pseudogene - evidence: frame shift"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99248.1"
                     /translation="MSETFKKNDYVIAKTDDFPDGAQGEIIDFRRHDTRAYIHFINQD
                     KRLDRWVDIGTLRLNPDQINVNSKNKKSHDNSDEEQPELIKFEEVHREITKIRNIDMI
                     TIGNYTMRTWYFSPFPYPYFEMDHIYMCEHCFTYFASEKDLQDHIHELNETHPPGREI
                     YRDGNLSIYELKGKNQKIPCQNLCLLSKLVSDHKLCFMM"
     assembly_gap    52473..52572
                     /estimated_length=unknown
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            52573..>53437
                     /locus_tag="TVAG_296340"
     mRNA            52573..>53437
                     /locus_tag="TVAG_296340"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296340A"
     CDS             52688..53437
                     /locus_tag="TVAG_296340"
                     /note="encoded by transcript TVAG_296340A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99249.1"
                     /translation="MSFLYKAKEFADLALPYFTFSHTVRISYENGIPKTSSYENSECA
                     EKYTIYPLEFITLSILSDDPKYMQHTMRRFKTILRDHQYETELNQKYYYLDMLVKSYH
                     LIGDAGLNFIELFLKYINDVREKRPINKVTDEYRNYYLPGTMMMAMVKKNHKIEQDKN
                     YSKLALNEIIKNLENIKSDTEPYFATLSSLFVFYRIEGLKEYRDFAWELFDKIKKMDV
                     DDYTLGSLMYIYLIHSDNDFFSLDDYVISHI"
     gene            <55415..>57598
                     /locus_tag="TVAG_296350"
     mRNA            <55415..>57598
                     /locus_tag="TVAG_296350"
                     /product="UvrD/REP helicase family protein"
                     /note="transcript TVAG_296350A"
     CDS             55415..57598
                     /locus_tag="TVAG_296350"
                     /note="encoded by transcript TVAG_296350A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="UvrD/REP helicase family protein"
                     /protein_id="EAX99250.1"
                     /translation="MSQRYLDDLNEEQRAAVTASIEDPLFIYAGAGSGKTRTLICRIA
                     YMIDQGVNPENILAMTFTRKAADEIRERLKTFIGPKASSVTTSTFHQLCLNILKQNPF
                     ILGFSGNDQTFHIADNTEQRKIIKNAVNALRQKDPSRKDFSTPTSLRIYTNKMHNFVN
                     RAKMLGKKSQDLFGDFQFILKFYEDTLHKRRLIDFTDFMTYTQELLLKHQRVAYKYRK
                     LYQYILIDEFQDTSDINFAILKLILQQSMTRQPPNRRVTIVGDPHQSIYSFRGANPDN
                     IKQFLEMFPDAGHVTLSKNYRSCESIVKASQSIIKFDGNETELISMIPGGNPIKFISA
                     SDAYAEADSICTEIERMVYPGSSIQYRDICIMFRMKKVASELEMELFRRNIPYSNKRG
                     LSFFMRSEVREIVSYARLLLNFGSEENDTNQLLSSSFEMVLNVPDRQLRACIAPQVTS
                     EASKNKVNVLKYLELLINSKIKSDFPKATIKKLAEFYQIIGKLNRQICQINTSLSTDT
                     VLETIIEITKLCNLDENSEEKNSEDLDEFSEAVQDMINDRNETFQLLLEESKRFHIRL
                     LAANEGTPLSSQKCLQKFIDSITLETTSSNMKNAVTLSTIHQMKGLESPVCFIMRFNQ
                     SILPMADKDSDDSGLGDQSVSLNEERRILYVAMTRARQKLFLTCALSVRGKVMEISQF
                     LPEIDQNYITRDIILTDDEKREVQKIMKLNEEDSDSDFEFNFSQN"
     gene            complement(<58209..>59669)
                     /locus_tag="TVAG_296360"
     mRNA            complement(<58209..>59669)
                     /locus_tag="TVAG_296360"
                     /product="surface antigen BspA-like"
                     /note="transcript TVAG_296360A"
     CDS             complement(58209..59669)
                     /locus_tag="TVAG_296360"
                     /note="encoded by transcript TVAG_296360A;
                     Probable pseudogene - evidence: frame shift Identical to:
                     TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="surface antigen BspA-like"
                     /protein_id="EAX99251.1"
                     /translation="MENNFCIFQYLEKAIVSPSVSQFSAAYFNNPNMKEFVVTGNQNF
                     ISIDKVIYTSNNETLYAYPAGLEANEFTVPDFVKTINPYSFSYCDKLEKIIVSSNILL
                     SNGMFIYCTSVKSIELKAPLNFFPEGCFAFCSNLTSIVIPETSVVTQLFSHCFHGCFS
                     LQNLNFNNKIELVDFSCFEKCISLIDIDLSQLTEISESCFRFCSQERINLHLSDKLRS
                     ISKNAFENSKIVEFICPRNLMYIGDYAFSYCIELKIFKFNDKIAQIGNKTFNYAGFDE
                     IFIPDSLRIIQPTSFCNQHYIQFTFSEGGHPKFYVENDCFMNKAGELVFIIRGDKVVF
                     ELPPNVKIFGTGSINESNYNRIVVKSDISDSHLLYSEEDKSKLCVKSFSNNSCNFNIS
                     DVNNIERYAKEGEYEPTYKLSNNLYIKDSFIHISEYITDSSYYEYLPQKSFIFNENSR
                     LNSILEVILSVFVSFLLIIIMILAIIALKESRKSAH"
     gene            complement(<59725..>61572)
                     /locus_tag="TVAG_296370"
     mRNA            complement(<59725..>61572)
                     /locus_tag="TVAG_296370"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296370A"
     CDS             complement(59725..61572)
                     /locus_tag="TVAG_296370"
                     /note="encoded by transcript TVAG_296370A"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99252.1"
                     /translation="MFSILFCLINYLWVRSPNSYSLNIVGEDTIIFEPPKSGEDTYVA
                     FLNPEDFSTSETMHLEPLYKNICGITIRSASANITVYFSFIRISKGFCETVDFVFARR
                     EYYDFNTVPRYVNACIIYPTYKGIDFNFFFNDPYGTSEFYDSDSSQRSIYFAFNLIHK
                     FQRNGTTSSDYYHHFLSNLHRSPLIIEYFHVWYFEDDISFIKASDKSYNSGATVCPNS
                     VTKISERAFYNSSISSINLGNIKELGSNAFCYCRKLNQVSLYSIQFLTTSCFKDTSLV
                     EVDLLSQLTIIPSYAFCNCTKLQKFKCNCIYIEHYAFCNCTSLKSFDFNIRSLYDIAY
                     TAFLNTSIEEIEVNTAFHSFPAIKHLNITKVKMTIIDDYRNDYRNDHLNSFFDKIKLN
                     IPNLKTIEFPNGCNYIFMTNTLVENIIIPPYSSCTIFISSCYKLKKLPSSIYDVKYVG
                     DMPELEEVDLSNCYSISRNSFFNCPKLARIIGWGDHSMILGACLFESCPLIDISIWNS
                     MLRAESNYYERYSPLENTYIKEMTIQSGNVPKFIGCKVLKKATFLENCGVTKIDDYLF
                     YNCVSLTEVILCKSIKSIGVKAFKYTNISYFDFTNIYDFDLSAFTLSKT"
     gene            complement(<63451..>63621)
                     /locus_tag="TVAG_296380"
     mRNA            complement(<63451..>63621)
                     /locus_tag="TVAG_296380"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296380A"
     CDS             complement(63451..63621)
                     /locus_tag="TVAG_296380"
                     /note="encoded by transcript TVAG_296380A;
                     Identical to: TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99253.1"
                     /translation="MNKAIELGCDLVSFGRPTIADPFMVQHLMESKSIKCISYNKCFM
                     NHHIQPVKCYAF"
     gene            complement(<63645..>64064)
                     /locus_tag="TVAG_296390"
     mRNA            complement(<63645..>64064)
                     /locus_tag="TVAG_296390"
                     /product="NADH oxidase-related protein"
                     /note="transcript TVAG_296390A"
     CDS             complement(63645..64064)
                     /locus_tag="TVAG_296390"
                     /note="encoded by transcript TVAG_296390A;
                     Probable pseudogene - evidence: frame shift Identical to:
                     TigrScan, GlimmerHMM gene predictions"
                     /codon_start=1
                     /product="NADH oxidase-related protein"
                     /protein_id="EAX99254.1"
                     /translation="MKLKNGNLISKSDNSKAIEFFASAVKRAQHIGAAGIEFHGAHVY
                     LLSIFLPKTNPRDDQYGGETKSRFRFLQECVDAFRFLSGKDFIVAAKINADDWAKGRN
                     KPEDAAKSQFLSKELIYGNTHLVIPTLRKGTDAKLLL"
     gene            complement(<64455..>65174)
                     /locus_tag="TVAG_296400"
     mRNA            complement(<64455..>65174)
                     /locus_tag="TVAG_296400"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296400A"
     CDS             complement(64455..65174)
                     /locus_tag="TVAG_296400"
                     /note="encoded by transcript TVAG_296400A"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99255.1"
                     /translation="MINIFISLINCYWIHNPNSYKIGNLGEDTIFFEPPKLGEDTYVA
                     FLNPENFSTNTATHLEPVYKNICSITIKSSSKNATLYFSFIKIDKGFCGTVDFYYSLG
                     DRYDILQVSKYANACIIYPTWEGIDFNFFKKDPFGTSEFFDSDSSQRSPYFAFNLIHK
                     FERNRTINSDYFHRFGKFEMRSPVVINNFHVWHNEKDKPYLGLSDTSYNVGATVCPSR
                     NSRSLHKHNGNSGKRKRITTK"
     gene            complement(<66294..>66509)
                     /locus_tag="TVAG_296410"
     mRNA            complement(<66294..>66509)
                     /locus_tag="TVAG_296410"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296410A"
     CDS             complement(66294..66509)
                     /locus_tag="TVAG_296410"
                     /note="encoded by transcript TVAG_296410A"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99256.1"
                     /translation="MAAGIFKKLWDRVKRGASKVWETLKKGANWIFKNKEAISDVAES
                     ITPKAAPIREVLNKGEKVYQRLQPILR"
     repeat_region   66579..68219
                     /note="repeat family R40b"
     gene            <68244..>69071
                     /locus_tag="TVAG_296420"
     mRNA            <68244..>69071
                     /locus_tag="TVAG_296420"
                     /product="hypothetical protein"
                     /note="transcript TVAG_296420A"
     CDS             68244..69071
                     /locus_tag="TVAG_296420"
                     /note="encoded by transcript TVAG_296420A"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EAX99257.1"
                     /translation="MDLNSSTPYEELAGVYNTYIDDMINEALSDNRNALSKEKLMKIP
                     YSECYLNSITAAIGKQNKGKTLTILKQIIIIANTSPYSHVLIYINRSGSPSDDTFESL
                     KHLIKIPIIYLSQEEAEDYLKNFLMYKELYNTIKKQGLEDKIIDKQRDELFETLSISN
                     FDREFLHSLIFLDDAVKSKLITNEKSYFNQLLTQCRHIQCSFFMAVQYFKALSTNIKS
                     NLSTLFIFSGFSRQQLNVMLYQVNLPMSINELYTQYQQLGEHGKIIVDLNKGGVKFD"
     repeat_region   69112..69451
                     /note="repeat family R40c"
CONTIG      join(AAHC03002989.1:1..8546,gap(unk100),AAHC03014029.1:1..1725,
            gap(unk100),AAHC03003402.1:1..7303,gap(unk100),
            AAHC03000623.1:1..34598,gap(unk100),AAHC03001779.1:1..16882)
//