LOCUS DS113391 116018 bp DNA linear CON 15-DEC-2022 DEFINITION Trichomonas vaginalis G3 strain G3; ATCC PRA-98 unplaced genomic scaffold 1047229023559, whole genome shotgun sequence. ACCESSION DS113391 AAHC03000000 VERSION DS113391.1 DBLINK BioProject: PRJNA16084 BioSample: SAMN02953626 KEYWORDS WGS. SOURCE Trichomonas vaginalis G3 ORGANISM Trichomonas vaginalis G3 Eukaryota; Metamonada; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas. REFERENCE 1 (bases 1 to 116018) AUTHORS Carlton,J.M., Hirt,R.P., Silva,J.C., Delcher,A.L., Schatz,M., Zhao,Q., Wortman,J.R., Bidwell,S.L., Alsmark,U.C., Besteiro,S., Sicheritz-Ponten,T., Noel,C.J., Dacks,J.B., Foster,P.G., Simillion,C., Van de Peer,Y., Miranda-Saavedra,D., Barton,G.J., Westrop,G.D., Muller,S., Dessi,D., Fiori,P.L., Ren,Q., Paulsen,I., Zhang,H., Bastida-Corcuera,F.D., Simoes-Barbosa,A., Brown,M.T., Hayes,R.D., Mukherjee,M., Okumura,C.Y., Schneider,R., Smith,A.J., Vanacova,S., Villalvazo,M., Haas,B.J., Pertea,M., Feldblyum,T.V., Utterback,T.R., Shu,C.L., Osoegawa,K., de Jong,P.J., Hrdy,I., Horvathova,L., Zubacova,Z., Dolezal,P., Malik,S.B., Logsdon,J.M. Jr., Henze,K., Gupta,A., Wang,C.C., Dunne,R.L., Upcroft,J.A., Upcroft,P., White,O., Salzberg,S.L., Tang,P., Chiu,C.H., Lee,Y.S., Embley,T.M., Coombs,G.H., Mottram,J.C., Tachezy,J., Fraser-Liggett,C.M. and Johnson,P.J. TITLE Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis JOURNAL Science 315 (5809), 207-212 (2007) PUBMED 17218520 REFERENCE 2 (bases 1 to 116018) AUTHORS Carlton,J., Miller,J., Delcher,A.L., Schatz,M., Schobel,S. and Fraser,C.M. TITLE Direct Submission JOURNAL Submitted (23-MAY-2005) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA FEATURES Location/Qualifiers source 1..116018 /organism="Trichomonas vaginalis G3" /mol_type="genomic DNA" /submitter_seqid="1047229023559" /strain="G3; ATCC PRA-98" /db_xref="ATCC:PRA-98" /db_xref="taxon:412133" /chromosome="Unknown" gene complement(<67..>3369) /locus_tag="TVAG_312070" mRNA complement(<67..>3369) /locus_tag="TVAG_312070" /product="hypothetical protein" /note="transcript TVAG_312070A" CDS complement(67..3369) /locus_tag="TVAG_312070" /note="encoded by transcript TVAG_312070A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07808.1" /translation="MPRKLRKNIRKRKGALKHPIVKLTPQQQLQQQMMNDPTMLQQMS SNPMLLNRVIGAQSGGLRAALLAKMAGYGGAADGTAYNPQSQMNLSSLKNQITDVKKS NIDIQKQISENEKKLEYDRHTKKLNELNVEKKKKEEQLKELSTEEYAKKVSEKAAEVA KMEQDVINLKNHTTQYKVLKDEEIKQKALKTYMDSDEYKKEVEANVKAEKLLQLQNQT VQYENLAQESKNNDAAMQKAMKSAEYIKANNDWLDAQANAKAAQLIGSIRTKIQADED SSNEALMNADFKNAFEALHSKVKLVNDFSSGKKLKSEGFDKELKEVAQNMTKITDAAT RQAVQSAYDAVRATVVESQEKELQQTKTDLVNAFLRTKSQVGHYAADGTYVPAGGTYI PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQQQPKPTVQNPAQQPT VQNPAQQPTVQNPAQQPKPAQQPPPQPAQQPSPQPAQQPTVQNPAQQQPQTEQGHKRS REQGNQEFLKMLKEDYGYPDTLDFSDRYKEAIRKFKEGNTDPNLFSFMVQHQMGYNLK PGKYKLAKGYDLIAYHPNDMNEFTPRYLVSELNDNSTLFMKRVKNRDGTKEERFMSPD DLDRELVKNGLGIYEMPADEVQETQQEEVQIQPDMEEIVQQQQLEEPEGNEQVPPLET NFTELDEDLEQPKNLDPQQEYEVNMESFQESKKNSADIVEEYRKMFADIQKTPTSDEN IQHRMEVLKENVRKYNNPFYLRPYNVQSLAELGENKRLNFNKTYRNETLFKVHSEPNQ YGNKPTFVSADYGTTMRWGHKANPDRWFINLQPQFQEVVDAMEVNGEPDIAGIFSAAL MPLKDMKHADILDQYEMNMADGNITPDVLEHLSQRTTQNHRDGIFGEEFRKKVREREG REPIVHDLANESLQNVIKTYFADNEPRMDEYLRKLKWTVPNEMLVLKNMFLDKIKPTT EINDARLKHWVKAFPFTKDIIGNMERKPEWLQKHIFGNELIPYGQALFEELEPETQER VMQTIREDSNTNYDKIFLGYRLPEMGDQSPKAKRTWEIYNILGEHEAKMQQLEAEGKL PKATPKKKSRTK" repeat_region 3616..3650 /rpt_type=tandem /rpt_unit_seq="t" /satellite="microsatellite" gene <3956..>5164 /locus_tag="TVAG_312080" mRNA <3956..>5164 /locus_tag="TVAG_312080" /product="hypothetical protein" /note="transcript TVAG_312080A" CDS 3956..5164 /locus_tag="TVAG_312080" /note="encoded by transcript TVAG_312080A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07809.1" /translation="MESEDERKLTRLVRELVGGKPVSEVNPKIIPQVIDAMEQHKQTA IANGQVERVRKLQSIMAELSKLDRKRKSIGKHKAKSEKSTSRSIDTTTEDSHKEITPA VVESVLADIMDGFPLDVAENYLLPSLIQAARDHVNQELSTGNYKEAQRYEDVGNTLVA LSNERMVEMKKNEKREALVYQFTQAEEALRKENESLRQALEDHDERSKAAEDALNAEE EVTLNDHDAVTNGDLPVEKLKFSSALLNLRETEKFLVLSRRFEEAAGIKAEADQKEIE EVKAIHEKYLKQRKIQRNKLVESFDQRRKCLIEKNARLRQRIEQDHQAERSALERAVE NWRQRIIEFDKNLEAQNIPIVETKKTPRAFVTQRTPPLSAHRTPRPATQTRAIRPGTS RLAKLAVSRK" assembly_gap 9230..9329 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <13187..>14749 /locus_tag="TVAG_312090" mRNA <13187..>14749 /locus_tag="TVAG_312090" /product="SacI homology domain containing protein" /note="transcript TVAG_312090A" CDS 13187..14749 /locus_tag="TVAG_312090" /note="encoded by transcript TVAG_312090A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="SacI homology domain containing protein" /protein_id="EAY07810.1" /translation="MSFICFDEKGFFVQAKGKSVAFNRNKVYELIENPQFQNTENHHT IVDFLGIFDIAGVKLAAVSTAVSNVTSFWGINKVDSFEVYQITTGPVNQEAINLLKKG LSLSPLYYSETVDLSLNLKLQKQEAASRQHFIWNGVAIKHFVESTKVEGLCQPVIAGF ITSFKAEKFEFALISRRDAARAGTRFWMRGADEEGHVANFVETEQVVITEKETYSFVQ IRGSVPLEWTQYPDLSRLPRLRLADREHNHEILDRHFKTITDEYGKVIAVCLTDHKGK ELELTETFNEFGKQAENVRFEYFDFHKECAKMKYQNIDKLVNTISEDLDNEGWTELNG EKVQNGVVRTNCVDCLDRTNVVQSVLARKILDKQLAASEAVCNYESLFRNAWTDNADC ISLQYSGTPALKTDFTRTGKRTINGSLNDGANSIKRYYINTCTDGTRQDAYDAVTQSV EIKSLAKENFVVALLIAIFMLIQAIIILIQKGKKSPDFKKKVLQARMRLVNSPRFREI KPAEKTVEPKKE" gene 15474..16168 /locus_tag="TVAG_312100" mRNA 15474..16168 /locus_tag="TVAG_312100" /product="hypothetical protein" /note="transcript TVAG_312100A" CDS 15484..16131 /locus_tag="TVAG_312100" /note="encoded by transcript TVAG_312100A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07811.1" /translation="MSEEGENAPTEQKPEEQPEGQAEKTETPKGVSIHIGNIPFELTE PKLKEIFGKFGEVLSSKIPTNQANRSKGYGFVSFALKEDAQKAIDSMNNTELDGRKIE VEFAKGDQKQPRSDRRDRGSRGERDSDRRRYSDDRYYRDDRRDRDRYSSRYDDYDRRR YDDDYDRRYDRRDSRRDDYDRRRYDDYDRRYDDRRYDDDRRRRDDRRDYGRSERY" gene complement(<16457..>20170) /locus_tag="TVAG_312110" mRNA complement(<16457..>20170) /locus_tag="TVAG_312110" /product="hypothetical protein" /note="transcript TVAG_312110A" CDS complement(16457..20170) /locus_tag="TVAG_312110" /note="encoded by transcript TVAG_312110A" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07812.1" /translation="MSLGRVNQKLYCEAFPKCSDYINTFNEIYQLKSRNISEIKLLYQ KIKNSLINTKILSPDEMVIAISKAVFNNIGHIQSYLFLFNLIHEEFNTTNIREFPAFL DFHLNDLYKFVFNKSNIERFEEVSVNSAQSICKTIIENDLKAFISCTEVDEFEKNQII TTDEYSGSIEEYTVLELCCYHGADDCFKFLRSKYKPRITKKCLQFSFLGGNPYIINEC LKYIIPDDNDMKYAIVSHNIDFVAFLMNECNLQIDYRECYNYNNIQAFLVCLDQVSDI SQYFVFSTLFNIPSLCEYLLSYKFNINSLYLEEKPAIYYAFKKNNIEMMRILISNGAF LNWRDSECKTILHHAVINNNIEWVNFLLTNYIDINASDCSGKTALHYAIEYNYTDLAK ILIMRNAFLNAVDNQLNDPLHYATQNNNVEIIELLLSHCAFLNNFDSQHQTALLIAAK TNNYKIANMLILHGAFLNAKDEKSNAAIHYAVINNNVEIIKSLILHGASIDIVDNLNN TALLIASQNNSTDVAKILISHGASLDNVDECEYTALHYAVTNNNLEIIRSLISHGASL DIGDYNRTPLHIASQENNTDIAILLISQGASLNKVDEYGNTALHFAVTNQNITLINFL VTYGASLSIMNKDHQTALLMAVKVDNTDIAKLLINEGSYINIIDTYGNTALHYAVTNN NLEIINFLITHGASLSILNRNKQTALLIASKYNYTEIAKIFISNKSHLDEIDNFGNRA IHYIAMHNNIELLDILINNGANINAKNKSWQTALHIAALNNKVEFVKIPLSHGALLNE KDVENKTALQIATMNNNTEIAKLIISRDDSFIDSIDTLNQSLLHIATKNNNNLIVEAL IAHGADMNVRDYVNKTALHYAFLNDNTEIIELITLHGGDLNLEDNDGNIALHYMIKNN RQEFVKLLISHGADVNTINKNGKIPLQLAVENNLKEIVEYLVSHGANINQKDMKNGQT PLQYAIMEDYEDIAKYLIYHDANINAKDQLGRTSFHFAAGNHNIGLMNLLLSKNANIN EVDNSGRNALHYAVNNDNCYESIKFLCDKKAKITEIDIYGNTVLHFAIRGNSKESIEY LLERGADKLVNKRNYKGSTPLHYTAIDNKEEIVFLLIKYHPNLNIKDNKKTNALLYAL ENNNERIANMLIINGADVNESDNNGCKAIHYAVKKNFKKHLXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXHGRNSSCSLCRFYCGG" assembly_gap 16510..16609 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<20674..>21906) /locus_tag="TVAG_312120" mRNA complement(<20674..>21906) /locus_tag="TVAG_312120" /product="hypothetical protein" /note="transcript TVAG_312120A" CDS complement(20674..21906) /locus_tag="TVAG_312120" /note="encoded by transcript TVAG_312120A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07813.1" /translation="MVLIQLNNQILQRINNYQALDKVILSINNVEITLTKSFAVAISQ TFYSQYLLDNNIAKIDIHTDVKSQETYNVLKDILQYNKTDIECDETILNDLFHIGIIL EMQELTYLYKMHVIDKMKIDNNNCIDLLEFYFDISSQENIIECIKYISSNFYAIDSNK LKLISNKLGIDILQQIFSSDELLLEDEDSLANFIISLTKENEKFYPLIENIHFEFCNE QVIKSMKDIVDLNNYHCVVNSLSDSLLRSRNPKSKDRILQCENKTNYFKSGNVEMSAS SIGSGHSIDVINKYRTDTYFKTENIPNSWVQWKLKQNIAIQPTEYIVRTFHSGISSYQ LQTWKVEGTTINGETKIIHEVNKSPLNAGEIRKYSLNTNDKFISFKLIQTGKIAYSSP NDSLRLDVFDFSGKIFSK" gene complement(22332..>25257) /locus_tag="TVAG_312130" mRNA complement(22332..>25257) /locus_tag="TVAG_312130" /product="Ubiquitin-conjugating enzyme family protein" /note="transcript TVAG_312130A" CDS complement(22354..25257) /locus_tag="TVAG_312130" /note="encoded by transcript TVAG_312130A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="Ubiquitin-conjugating enzyme family protein" /protein_id="EAY07814.1" /translation="MPDIKIDFADSQITWFYADTWTVEQLCKDIQQKIDIKNKIQLGL FGSVLQPDMQLLDAVLVTDSLSILDENGESTIQIPEGFEPDPPHGQYKVFTTCSYESL YKGELMKLDQNLEFNQQRQEIISIIKERYNKDNIDVLIYLPGAILYTTGTIADFYDCH PSAKKKLYVTVISTKISEYARLSIPSYYSEVNPNPCCISDPQKIFSVSVVHELDQTQR IFGGAVLGLLCNTDADILEKSIGWFEKNLRFSPCIISLFEMQSRSQVRYHHILSLVAT LFTIVETIFKSTTNIWERVLDLLKYIDSQSINSPSRVSIVRQPFLNDSAGSYFLKNIQ YFQIYDHVCKYSSDFSKSMSFIKDMECPTVNEINQSQSRIFRVFTVTDAITNPHPMIF LGNGAHLLSLGTSYMDKSQNQIVSKKLVKVIDPREGEPRDKPLDEFAQQLREQKIKIE TPSEVKQINIICIDTSGSMGGTKIQIAKTCFKVIVNRAYEVGPSSLWGLYTFNSTPER KLKLSPIPADFHTQVDKLGVSGCTALYYCIIAAMNEINEKVKSDSSYKNALKRIIALT DGGDNTYSHNTARGIADLTKQLIDNGIYLDYIELGNVGDMKLPRNMAYYTGGDYLKFT SDIFQSSSSRVDIRKIRSVFESDGFFNLTLRKFNAVKKGVENLSTIMLEDRSPIMKIP VKNFNYMDKDLMTLTTAIYEIEQKDSITTLEKEILTNLQDCAAHFNSQKLESKKFHIF VAKNTEFRNWNLYLRAKKDSPYGPNKWLKLAVIIPEGFPVTSPEIRFLTVPRHPNITI DGSINIDVLRSRHNSNVTIYFALLAIRNLLSKPNFDSIQNMEVFDAVENLSNKIDAIT DKNFKGEVLPNIKDDVPENAAINFGVGKTVKPEFCDPFTFRWMREPVLASSGNYFDKG PLLTKIKQSNSALIDPLNGKPITIDEQAQVDKIMLGNIREYMVKHFGAKNVPI" gene <25471..>26148 /locus_tag="TVAG_312140" mRNA <25471..>26148 /locus_tag="TVAG_312140" /product="Bromodomain containing protein" /note="transcript TVAG_312140A" CDS 25471..26148 /locus_tag="TVAG_312140" /note="encoded by transcript TVAG_312140A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="Bromodomain containing protein" /protein_id="EAY07815.1" /translation="MNTIPTSFEDQIKTCLKITDIIISHPLSALFLEPVDPEKDDAPG YYEKIKNPKTLSEVRSNLLDKKYASVSDWKDDIKLIWSNAILYGGEQSIVSKLARQME KFANKLILSKLPLSTYDWIDSIGTYVTKLKTQYSYAAANNEFLAPLNSKNKEYHVRRL CEALPKLTDEIDRVQIGRILALFDAKYETNEANTINLNEIPLESLNLLIVYTKYRFDQ QKLQYPD" gene complement(<26342..>26995) /locus_tag="TVAG_312150" mRNA complement(<26342..>26995) /locus_tag="TVAG_312150" /product="hypothetical protein" /note="transcript TVAG_312150A" CDS complement(26342..26995) /locus_tag="TVAG_312150" /note="encoded by transcript TVAG_312150A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07816.1" /translation="MNDAKVISSKQLKSITPLLTFIIDGVKLYPHSKYPRPLLVTDEE EFESQKITKKDIITEQLYHVLYFLQNTALNLSGQQRVLLRTEDKQVIFVDPRLKVPDV FDDYLAMLHLLMEDRRVCSVEKGSEIMKFVKSDLTHSIPTGAKRIAAYLSKTDSVTSP DEFLKAEPTAVYIHLDPTVQSYDEVLLGKYCVSNDILSAVTLASRILHSMESKANLW" gene complement(27235..>28349) /locus_tag="TVAG_312160" mRNA complement(27235..>28349) /locus_tag="TVAG_312160" /product="hypothetical protein" /note="transcript TVAG_312160A" CDS complement(27252..28349) /locus_tag="TVAG_312160" /note="encoded by transcript TVAG_312160A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07817.1" /translation="MSSRKKKIDPMLYMGYADEKESIESIEAKFAMMENKEREGDLSA EESAKSVFLETVTPDQIPLDVWFDLENYGEEEEQLMDDIYEPGYYDGDEDIPRSMRRS HSRGSGESGGLNFANFTQIDHLGSGIELWPDYKLRSVDCDKNTAMISAEFPNVQEGLS YERFQDICEKCPITTIPKMTPKAIYEIAGNNIDAIIMDVPFGHNGWTGATFYQFLREM KNTIGQSFFVIWADPEHLPDVVGACTRLELKFCDSISCELLSPMGDPVSIELKNGFHR ETRMLVMYRTDDISRNDLAQQRIKDTGWGISVRGGKTYDRYSMPMVAHQIIETMLPQK KNKRRVFVELWPSTYNRRNGWTMINEAEYEK" gene 28977..29335 /locus_tag="TVAG_312170" mRNA 28977..29335 /locus_tag="TVAG_312170" /product="Dynein light chain 1, cytoplasmic, putative" /note="transcript TVAG_312170A" CDS 28989..29261 /locus_tag="TVAG_312170" /note="encoded by transcript TVAG_312170A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="Dynein light chain 1, cytoplasmic, putative" /protein_id="EAY07818.1" /translation="MSQDKRAVVKNVDMSDEMQQKAIDTAIQALDSFNIEKDIASYIK KEFDKTYNPTWHCVVGRSFGSFVTHETKHFIYFYIGQVAVQLWKCG" gene <29754..>31706 /locus_tag="TVAG_312180" mRNA <29754..>31706 /locus_tag="TVAG_312180" /product="AGC family protein kinase" /note="transcript TVAG_312180A" CDS 29754..31706 /locus_tag="TVAG_312180" /note="encoded by transcript TVAG_312180A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="AGC family protein kinase" /protein_id="EAY07819.1" /translation="MSQNRDALATDSDVYLQQTKDWGLDLIRDFLEDISSAVNIALKI GATFQKLNDAPLDTLEETLESIISQYSNENPTSDSFNQTKLQFLFLLLKFKHALYPLS QQSQMLMKRWDSVNRTPQRVQSTFMRRSPIKSEPKRITPEFSPKRVVFGSPSNSKKPL CRICECAISADDFYTHTINCLECHSMKLEWSDINEEIEKQIPTLKSHEQEMLQQVIKN CQFTSSMSLFLSANFIKQVKSNNLSIPPTLFELVKRRHHLMKHGIQKANVATSSIATN DSPNYTEGYAMPPLPPPRLRDFKIIAPISRGAYGSVFLCQRIQTGDVFALKVIPADDL SMKNDVLDTEREVMCRALHPSTISLFWSFRASSTVFFVMSFARGGDLYALLESVGSLD EEVAAFYVAELVLAIEYIHSLNVVHCDLKPDNILINDSGHLQLTDFGLSKFGLEQREL GRSLMFRFAPSSATKSDTNDHKRRVIGTPHYISPESLLRSDYSPKVDWWALGVIAYEL VVGEPPFGGNSEAEIFSHIVAGKYEWPDDVEVSDEYKKFVHDLLNLNPEKRPDAEELK KYKIFEDIDWENLYNTNAPFVTTVSDGFDLQYFENSRNSGTFNIEDIDELKAAAAARE KPDEWCCTNIAALAERNKEVCKSLNL" gene complement(31784..32423) /locus_tag="TVAG_312190" mRNA complement(31784..32423) /locus_tag="TVAG_312190" /product="hypothetical protein" /note="transcript TVAG_312190A" CDS complement(31996..32235) /locus_tag="TVAG_312190" /note="encoded by transcript TVAG_312190A" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07820.1" /translation="MNSFNICNSFPMEIKELGKETSFNSEKSLNASVSKVVIPSPIIK WTVEALNSANAPLLTVPVPLTVRVFVVESYDDELS" gene complement(34956..>35927) /locus_tag="TVAG_312200" mRNA complement(34956..>35927) /locus_tag="TVAG_312200" /product="hypothetical protein" /note="transcript TVAG_312200A" CDS complement(34998..35927) /locus_tag="TVAG_312200" /note="encoded by transcript TVAG_312200A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07821.1" /translation="MIKYALFEPGKQGIKINESQTVTKVGNSYIFDYPCEDSSNCTDY AIDLHPGAYIFELYGASGGSTPGYVSTYHFQNNSCLSDTIVQFYKGNTKCLSNYNFGG AGGYVQGTIFLKRHTKIYATIAGSGKYEIRSNCAGSIDCFQPENMVRGGYGGGRSSSG FKDGSASGGGATSVKFLENTLYHRVIVSGGGGGSDDSHYGIGDGRGGSGGGLIAQGWW EDQIYKDSLVANSTFGFTFGSGEAAHFGDSLNQNSIKRNRNLHDLSGGGGGWFGGFSS NYQNAGSGGGRSWALTSDAIILPGNIASHDEFY" gene complement(36049..>37116) /locus_tag="TVAG_312210" mRNA complement(36049..>37116) /locus_tag="TVAG_312210" /product="CAMK family protein kinase" /note="transcript TVAG_312210A" CDS complement(36541..37116) /locus_tag="TVAG_312210" /note="encoded by transcript TVAG_312210A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="CAMK family protein kinase" /protein_id="EAY07822.1" /translation="MAYLQMELAEFGSIRPRYLKLPTQEIWKVFAHIISAVAYIHSKS YMHLDISPSNILQCSHPIVGNIYKLADFGTTLPVDNFKEDFEGAGPYVSPETLQYPNT EYPVSSPTDIFSLGVVLLEMVTRKYAPRAFPAYGDLRSGKYDFSKIPKEFSFISQMLA PNPMERPTAEQLLKLDGVQRELNLLHPYVDF" repeat_region complement(38735..40423) /note="repeat family R488b" gene complement(<40444..>40893) /locus_tag="TVAG_312220" mRNA complement(<40444..>40893) /locus_tag="TVAG_312220" /product="hypothetical protein" /note="transcript TVAG_312220A" CDS complement(40444..40893) /locus_tag="TVAG_312220" /note="encoded by transcript TVAG_312220A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07823.1" /translation="MTSKLSPSEKQSIILNEAKGIQHPLYYVCHMKNGSVQVRKRKAP LNSPAPAPAPVVQEAPKVDEKKEEEQAYTNKMLLEMMTKILERNSVVNEPNMDPIERE KETKENQEYVQSMEEKRIHFDDEPEPEPEPPKPQPQIRRIIPRIRRL" gene <40928..>41155 /locus_tag="TVAG_312230" mRNA <40928..>41155 /locus_tag="TVAG_312230" /product="hypothetical protein" /note="transcript TVAG_312230A" CDS 40928..41155 /locus_tag="TVAG_312230" /note="encoded by transcript TVAG_312230A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07824.1" /translation="MTENTFDREALKNELREEILNELKPKEQTQEEKPAKPKRKLTEK QLAALAAGRAKNPRMIAKKLREEEEAKKNNK" gene complement(<41349..>42698) /locus_tag="TVAG_312240" mRNA complement(<41349..>42698) /locus_tag="TVAG_312240" /product="hypothetical protein" /note="transcript TVAG_312240A" CDS complement(41349..42698) /locus_tag="TVAG_312240" /note="encoded by transcript TVAG_312240A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07825.1" /translation="MEVYSSFYCGQDVRILRDGFLKFRNDLMTEFEIDAYDYVSISSI SNKLFEKRVYWKNGNLFDLAGKPREYISKCIQGGRCMLAENKKQYNEGELITDFDAVS LYPSAIARLYCLEGIPKVMTEEMKSSEYLLEHLFDDDQAEPTKEKFISGFYCQIEILS IGKNSAFPLIVVNPDINPDLHVARSSNTCCKMFVDHITLQDLIKFQEISCKVIDGYYY DGKRDMTIRNEVKKLFELRAKYKKEGNPIQEIIKLLLNSIYGKTILKPIDKKIRFIKD NKLTDYIIKNYNDIQTIEFIPDSELSCVKSFKPIVRHFNYCPLGVSILSMSKRIMNEV FFTAEDLGLKLFYQDTDSFHLYEKDLDKLAEEYKRRYNRELIGKALGQFHSDFAEITA GHMSKAQRSIFVGKKTYLDELTNDLKEIAFHCRMKGITQDVIALTANQMSRCDTSTL" gene complement(<42714..>44846) /locus_tag="TVAG_312250" mRNA complement(<42714..>44846) /locus_tag="TVAG_312250" /product="hypothetical protein" /note="transcript TVAG_312250A" CDS complement(42714..44846) /locus_tag="TVAG_312250" /note="encoded by transcript TVAG_312250A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07826.1" /translation="MLNAIKGLVNNLSPEDKKGMLDMFGIKMPKKAKDITNKLALAIK NQGGTGSVADIFKNAKSFYDDYNGIMNVPASNSPVALDHDQRSHNRALMEMQPIYSDP PPKIDESELAYKEIQNAFYVVKNINGQKLPDEKWLDPITKAGERFIMFNIDQYSPRGK DYFNKMFPRVMAKFIGQIDLFKQKWTFYYDFDEKRNILRHLNINTMGSLVHQLLNEAP IAEVQELASKVLESNYDFFLCSIPSLRKIEIFDYTAYSDVDASALRKGTYTPYKLTAE EQVMLDTMRAAGQEKIALKIIKQNHSKKRNRSRNGQLWTWTCKLPINLERYQIFNELN AETAKKMMKDSCFIYACIQAGVDEATINHMREIIRVKDFPMSKIKVIAKETGIRFHVI KYNEKYSNHSYTYEPDEEPKMTVELLLMYDHYMLNEKLPISSMFIKNYEDVCKLCKDW TLEKKMLVNRRYETRYAINSKLVTPLAKVIELLFANNYFEPIRTGELCTYFTTMYNEN LEEMIDLTYNERYCARMKKDWSSETKKDMKFPREHVFFADFEASTDGNIHKAYNICFM EDDDDGYTSIWGSDCASKFLEALPDKSLVYFHNLSYDVTFLMSQLEEITGTPIIKGSQ TMQIQGKYKGKLLCFKDSYAIISTKLERFPEMFHLTSGEKEVFPYNYYTEELVNTAKV GNIDDAMNHVKDIEAFNENIEKIEDLQD" repeat_region complement(44890..45729) /note="repeat family R25b" gene <45752..>48856 /locus_tag="TVAG_312260" mRNA <45752..>48856 /locus_tag="TVAG_312260" /product="Phage tail fiber repeat family protein" /note="transcript TVAG_312260A" CDS 45752..48856 /locus_tag="TVAG_312260" /note="encoded by transcript TVAG_312260A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="Phage tail fiber repeat family protein" /protein_id="EAY07827.1" /translation="MSVVPYAYECYKSSVLQYKEYTLRITDNALVIHKEGADEDITIG PGILPIEQPDGTIVETDLNQYLQALQNRVTKVENNYLDAPFFTTDRDYMFSCMASNGL QETREVNINEALETIIYHVKRLLSIDHGVHFDPRSTLFNIPMIENSQLTFKEDTLYNA LNAAFAYILGHEQVQNSGIAIYLDKVMLKKPLTFTEDGPKATGIVGDGTLLTKEYLAS HVGEFFSTNDSISTTPEVILLKKPITFDVKGKTKATGIAGDGVLLTKEYLKKNINDFV EIVKDKESGLKFNPLSFIFAIANAGATAASWISLQSQINALWAFVESQEGIDTVLDTL GNLGPNHKGGFVDGIKNLVEKTKTSFQKITHIERFRNEGYMELESFDVTGPLEPIPMP RDANDEEEKDPGPKTIISTLSTLYPDFVTLVKVANTSRKNNNINMSGTDDLTDYLYLI LAELAKKVEENKNNGGRTALKIADKADKSYVDEEIRKVASKEYTLSQSVILKTIKGPE KDMYPGDGTTVKVNERVSFPSGIDTKEVYINGENINTTLFPLKNNEFTEPLTVKSIRS REDKPVIINKIGADNDQPVQIKKIRADDIILNYTLGSSAPQEDPSTSVKDTLNSLDSK CTNIEGHARNFEVYELPAMLDKKADKNHVHYISSDEQIITDYHGYLTQGEKVNTKNVN ERRYKFIRAKGYDIHCTVQYDTGIAPQSFGYNAEIYASYFFVNGVLVEPRFRLRVKAK ITVEDAIKSKADKDELDATNKVLKSHKHNISDINSLQTSLDNKADKTYVNEQISKISN ASVNNGIPESITVSFGNNDMGKVAIFINYNIGPSEKGPSYYTLSHGKSIELVFHKKDG TNLTIHPGDTFEFYLNDVTTVDYTYRPSNMFDMMYPIGSIFTSMSSTSPQTLYGGVWQ PIVDQFLYCSNSSMDFGGSKTIRVENLPPHSHRFSATTSTNGEHSHSMTKRGYTNLAA GSDRQGMNRYDITDDPRDVSTGIFCGSAGNHTHTVAGITDATGKGQDFLPPFMTVFAW FRAA" gene <49091..>49534 /locus_tag="TVAG_312270" mRNA <49091..>49534 /locus_tag="TVAG_312270" /product="hypothetical protein" /note="transcript TVAG_312270A" CDS 49091..49534 /locus_tag="TVAG_312270" /note="encoded by transcript TVAG_312270A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07828.1" /translation="MSEHHIKFFKIQQFVDEVKKQNKTAKRLLICLPQTLCQGKYGYS ASPIMIFVDKQKYTNEGLANLLKFEKIAINIPDHFSARINLDKTKSYCLYVDLTKSTK SKDKEYNPVELKTMGKNLLKAAIKPVEEIDIEDEAEEIDVDPEVL" assembly_gap 49732..49831 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<50656..>51501) /locus_tag="TVAG_312280" mRNA complement(<50656..>51501) /locus_tag="TVAG_312280" /product="hypothetical protein" /note="transcript TVAG_312280A" CDS complement(50656..51501) /locus_tag="TVAG_312280" /note="encoded by transcript TVAG_312280A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07829.1" /translation="MKLELTRLRSKYGNETTNTTTQTTKADRKIDDTPTPTPAMANIT TIAPRVPTGEGISGNVSTTHNITEAANVSAVEQPVVNVTQENATETSTPRQDVNNERP EVKEVAKAYLEKNTTQVLEAEKHLNSDKTPSPTPEASVPPAIGGNIPSVSPWQKFYGL FKGANKVMDAAENLQKFKNEVATGAKEIEENDKQAAELAKQQAEATKQAAAPKQSISK SQRQGPDPSAKVKQNPTPPAAEKSKKDKDKKKDKSKKDKDKKKDKDKKKSSKDKKHKN LSSKK" gene complement(<51509..>53479) /locus_tag="TVAG_312290" mRNA complement(<51509..>53479) /locus_tag="TVAG_312290" /product="hypothetical protein" /note="transcript TVAG_312290A" CDS complement(51509..53479) /locus_tag="TVAG_312290" /note="encoded by transcript TVAG_312290A" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07830.1" /translation="MNKLDKMIKEYRGLANTSSVLIKEVENTTKLQKMIHDELLLGEF SIKQRQSNLMGEAYYLENWYNERLKQMSTPTPTPTPTPTVAPTPTPTPEPTVAPTPTP TVAPTPTLTPTAHAGPPPMSSSHGITLNKPTPTPKITPVSHPSTTNPVSDSNQAERSQ VLKRANTPTASPIRTPEPTPRITKAPTPSPTVEPTPEPTVPPTPSPTPSPTPTKAPTP SPTPSPTPTKAPTPSPTPTKAPTPSPTPTKAPTPSPTPAEPTDAESIQNWLDEEKRKE KAAIDAALDKNTPPQTLGGYMLKKDNIQRQERALSVAREQAQEEKKIVEGEASNRGGP GTYKGSNYPAEKASSDNVVSRATDLVTHGILTGATAVGSAIGTSVDTVVDTVRTVTNP TPEDRKEEFLTLNTKAKPGIWIGRGILNAGSAIGNGASAVGGWLGRTATSTANGILTG AKSLGNWADDKYTKYYEEKARKAKEEAERKAKEEAERKELEELKKKEKARKAKEEADR KAKEEADRKAKEEADRKAKAATPSPTPSPSPSPSPSPSPTPSPSPSPSPSIAAPVRQF GAWGADLVKDAAQGIGKELKNTTLGTIERFGNLTDYTIRSAANLLYNQTTDNGTDELA VNGLASIKKSAEDKYDEWKKNIKGEYNKYAYP" repeat_region 51806..51891 /rpt_type=tandem /rpt_unit_seq="atggtg" /satellite="microsatellite" repeat_region 52742..52901 /rpt_type=tandem /rpt_unit_seq="atggtg" /satellite="microsatellite" assembly_gap 53773..53872 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 55843..55942 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <59123..60443 /locus_tag="TVAG_312300" mRNA <59123..60443 /locus_tag="TVAG_312300" /product="Late embryogenesis abundant protein" /note="transcript TVAG_312300A" CDS 59123..60256 /locus_tag="TVAG_312300" /note="encoded by transcript TVAG_312300A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="Late embryogenesis abundant protein" /protein_id="EAY07831.1" /translation="MVAATAIILATIKVGTIRYKFYMNNNSFYSIIPDVALECLPVSF KYAGKGLKYVNYYVQTEHVLGTASTLSRTLNILGKGIKTANYFHYTLGYANLMRNSLF ITKNLNDFYKNRAKNPNNFKDPFIRINETCDEECYQSIFQNESSFDYNFTNSSETDAL KLNLYLVNNAISLGTLSLMNAINTTGNYSELSELLTVTLNNIEAFKQMALLLNQTIND QETNQTNTEEDESEKSWIDKAKDNIKESFEAAKEYADKVMDKSKEFADKAKENINDSY EAAKEYADKARDKSKEFTDKAKEKSKEFADKAKENIKESYEAAKEYTDKAMDKSKEFA DKAKESIKESYEAAKKYADKVMDKSKEFADKAFSSVKKIAYKI" assembly_gap 61149..61248 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <62396..>63334 /locus_tag="TVAG_312310" mRNA <62396..>63334 /locus_tag="TVAG_312310" /product="oxidoreductase, aldo/keto reductase family protein" /note="transcript TVAG_312310A" CDS 62396..63334 /locus_tag="TVAG_312310" /note="encoded by transcript TVAG_312310A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="oxidoreductase, aldo/keto reductase family protein" /protein_id="EAY07832.1" /translation="MEIPQLGFGTYLANDPAKLKAALHYAIEECGVRHIDTAFAYYNQ NVIGETLKEIFAKGKIKREDMFITTKLWCTHHRKDLVEPELHENLAQLQLSYVDLFLI HQPIAFKSLPAKDGTMMPKDEKGKIQYEQIDILETYHAMEECQKKGLTRHIGVSNFSI EQLERIWFNCEIKPYANQVECNIYRQFKPLLSYCESHNIYLMAHTTIGHPPLKGPFGT SLLEDPVVKQVASEAKKTSAQICLKFLQQKSKMYILIPMSMNPKNIKSNYELDFTLTE QQMKKLEELDRFYSFYDYADFFGVDILNLGTNRWGQ" gene complement(63669..64125) /locus_tag="TVAG_312320" mRNA complement(63669..64125) /locus_tag="TVAG_312320" /product="ribose 5-phosphate isomerase B family protein" /note="transcript TVAG_312320A" CDS complement(63676..64110) /locus_tag="TVAG_312320" /note="encoded by transcript TVAG_312320A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="ribose 5-phosphate isomerase B family protein" /protein_id="EAY07833.1" /translation="MKVVVGCDHGGFALKQTVIDTIKSLGHEVIDVGTNSTESVDYPD YAQKAAHEIQSGNAQFGVLICGTGIGISIAANKCKGIRCALCHEHLTAELCRQHNNAN IVAMGARIIGPETAIDIVKTFLTTNFLGDRHERRVCKIMSLE" gene 64280..65682 /locus_tag="TVAG_312330" mRNA 64280..65682 /locus_tag="TVAG_312330" /product="alpha-tubulin 1, putative" /note="transcript TVAG_312330A" CDS 64291..65649 /locus_tag="TVAG_312330" /note="encoded by transcript TVAG_312330A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="alpha-tubulin 1, putative" /protein_id="EAY07834.1" /translation="MREVISIHVGQAGVQIGNGCWELYCLEHGIQPDGQLPSDKTIGV EDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANN YARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVD YGKKSKLEFTVYPSPQVSTAIVEPYNSILATHSMIDHSDCAFMVDNEALYDLCRRALD IERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVI SAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVAT IKTKRTIQFVDWCPTGFKMGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLD HKFDLMYAKRAFVHWYVGEGMEEAEFPEAREDLALLEKDYDEVAAESVEGGDEEEDGG EM" gene <66319..>66954 /locus_tag="TVAG_312340" mRNA <66319..>66954 /locus_tag="TVAG_312340" /product="hypothetical protein" /note="transcript TVAG_312340A" CDS 66319..66954 /locus_tag="TVAG_312340" /note="encoded by transcript TVAG_312340A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07835.1" /translation="MVAAGGGGFDYDGSGTLAGSGGGLKGFDGDGKGGNQTSGGDGYY KGIFGIGGGNGERVYTDTTPDGNAGGGGGYFGGGSAVLIWIGSAGGGSSYISGYPGCI SVDKDYSENNPKFSTAEDPSIHYSGIKFENPVIIDGKSPMPIPNLNKSIPEFGHLGNG HVIISTAEKFGYPYFSRINAIPYKVVCSIPLKVGRSFDDIFILSIMYLSLV" gene <67303..68420 /locus_tag="TVAG_312350" mRNA <67303..68420 /locus_tag="TVAG_312350" /product="hypothetical protein" /note="transcript TVAG_312350A" CDS 67303..68385 /locus_tag="TVAG_312350" /note="encoded by transcript TVAG_312350A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07836.1" /translation="MKSISLVDSSFPGATINVNEGKYQYTFEYPCESNTQCTDYEVTL APGLYRFENNTCISNSVVRKYNGNTVCYQMSSIGGAGGYISGIIHIPHETVTFLTIGG QGSYGYTLNETETDRCFSKEYMIKGGYGGGGSSSNFCNIDLAGPDGCGTSSGGGQTTV KFHKNDLWHRVIVSGGGGGSDNLEGTFAGAEDGSGGAGGNLVAQSWFSAGKLQKEYFT SSSSGFTFGTGEAARNGTTANNRAVPVGKNVDHAGAGGGWFGGFASQDGASGAGGGSS WALTSDAIIPDGNIDAAAEFFKNIKSEPYAFKKSSGYLFTDVVNVAGIWNGNGRIVIT ILNFVLPQSCPNNIRFFHSMLVFLMF" gene complement(<68773..>69504) /locus_tag="TVAG_312360" mRNA complement(<68773..>69504) /locus_tag="TVAG_312360" /product="Endonuclease V family protein" /note="transcript TVAG_312360A" CDS complement(68773..69504) /locus_tag="TVAG_312360" /note="encoded by transcript TVAG_312360A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="Endonuclease V family protein" /protein_id="EAY07837.1" /translation="MDIEETKAKLRELQTEMVVQIDNTKHLDNVRYVAGADLTVEDDL MVGCLVVIDMENIDTPVYSKCTVVNVDVPYIPGLLCFREGPVVLQMLDEFNQANTGIK IDLIIVDGNGEWHTRGLGLASYVGLKSNIPACGVSKTFFYVGEGCPQPKDVQKMAQDK CPEKGDYYVLDYTTSNDRYIKCAVMRTTDSHPFNPIYVSSGHLCDLDSVVSVIKKLCR FREPEPTRLADRISREFVRENKHKK" gene complement(69799..>71216) /locus_tag="TVAG_312370" mRNA complement(69799..>71216) /locus_tag="TVAG_312370" /product="hypothetical protein" /note="transcript TVAG_312370A" CDS complement(69834..71216) /locus_tag="TVAG_312370" /note="encoded by transcript TVAG_312370A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07838.1" /translation="MIDNSMALFHNDGGIHIEDEVINSQSSDDQPDANHITLSQVSCL IEHPSRVEDGEIDNYVYKHNTFMMEHKVKRVNKFIDTIRQYWSDALPTEMIVAFDESN GDIDELTMNLLKPEFKESVRKILKQKLEHKLKPITQPETTIPEEADDDEGEDEGDDGD YIQPVQVEVSRAPTHRHTKSNPVPHGVIPPCPAGVNPTNWVNWSDARRSSYLRGQEYP NAYYYRHLPPGEKQKNGGWTAAEKANFMNRVREFRGNQTFMSGDWGLFSKTIPGRVGY QCANFYRKLVEAGEIFDSNYEKGEDGRIHHKSRIHDGKIVVKTKGKVQRQHVAKPPKI IPPNKIRSIHFIFRSDPVQPTPTSTTYETTSASDEHLSRYEAWAAQNPLKDAIDQITQ EPIRVPAISPDGYVLDYNTWLNVLKSNKENPFTRVPVTKRQLVILTDDNFEEYEDKIV NLNAPAQEAE" gene <73494..>75209 /locus_tag="TVAG_312380" mRNA <73494..>75209 /locus_tag="TVAG_312380" /product="hypothetical protein" /note="transcript TVAG_312380A" CDS 73494..75209 /locus_tag="TVAG_312380" /note="encoded by transcript TVAG_312380A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07839.1" /translation="MRPIPIVIRNYRNSNNQAVNMDSNPKQRRMVRRFFIFDNYTTDD YIQYLSNLSLNFQTKTPDGIPYFELTYSTVSRDKVEKAEIPIINDEENDAIKTYTYMT NYTTDLEDFWFACLVVLLVLVSILFAIFLFRCYLMHQRYNQDDIRGFFILACLNELFS IAAYLIFLILFIFTFFFFIAFKWAKSVKFTIPISETQQTLNVFVYICTACSCLAVVLR VILQFGTDTFLIDWERTGRKKKGNPLRSVMLAHEWLNLCIRRDYNPAICLTLLVFILN GIKVELWATPIATVSLVDTGYTSDVLRFSNDCFFWIFILIVNIIFNLIKNIIFTSPLK KFADLCGTMNISVISLISKSWGFYLHGRQALIQEENMLISTSEEQSLDEFDQNEKRPL EEVGSITMSAEDRVFELFLSHPYREYFYTPYKRVLDIYRAANIKEPATPTAITPESRM EIDNMNKHLAKYYGAELGKRQYDVLYQPVANKVSGLPPLVDNRSVFYSERDHSFRKSL FTSHQVMMALFDIIIFTVVDITIHSPVIGAICSFCCDYLIEKTWKGIAILNLRKKALY DRRLY" gene <75668..>76165 /locus_tag="TVAG_312390" mRNA <75668..>76165 /locus_tag="TVAG_312390" /product="hypothetical protein" /note="transcript TVAG_312390A" CDS 75668..76165 /locus_tag="TVAG_312390" /note="encoded by transcript TVAG_312390A" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07840.1" /translation="MFSVLGFINDHFKVNYTYNFLFRFEKEYPSEFDFINQSTHPLYS NISANVSVEAVSPDCGTNLTLIGALNGIALSSSNKTLIDGSINHGYWYFAIGANTYYK VSGTITGPICKVDKGVTSVDLWLQYTDDIIFQMLPNLEIPSVPKCNSYHLLSNLHVFI LMLLE" gene <76557..>77735 /locus_tag="TVAG_312400" mRNA <76557..>77735 /locus_tag="TVAG_312400" /product="hypothetical protein" /note="transcript TVAG_312400A" CDS 76557..77735 /locus_tag="TVAG_312400" /note="encoded by transcript TVAG_312400A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07841.1" /translation="MSIEITETDLNQAFEDLKAGEFSAITVVVGASIEEKPELLEKAA EIISSSIDPTNWSKYEKEFEALVLAGFDNNKIFKQFDKIFARKDMAAFSQYIADLVAR YLSVHSTRVIDLELYISSHAAQNSPAFYDYVIQALYAQLQIDMHTDKFSEIEAAFVRF VDFEPQVTLFKVNELMKQSFIEMTNVLRDESGEKMGNSAFFNRIHLWSNFAFRSESFT QAYVTIIVHALRAKSLKLNPLRIKLIQILVNHNEFLAPLTSCAKVLLKSRSHKTGEAV EFEFDNLYLSTKEIGRTQKYQDEVYNRSFDLLKKCLFGLRNRIAFPEIAAPIVRSLEM MIADDTYKQNVKQLTKFKDAIKENATWIECAREKAVQKDGFNIIENTEIEGTAPFKIK " gene complement(<77848..>78573) /locus_tag="TVAG_312410" mRNA complement(<77848..>78573) /locus_tag="TVAG_312410" /product="hypothetical protein" /note="transcript TVAG_312410A" CDS complement(77848..78573) /locus_tag="TVAG_312410" /note="encoded by transcript TVAG_312410A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07842.1" /translation="MTTGETIENLEKQEKLLDQNINDKKEELLKIDRKRKVLQSMCDQ LQVQKAELIDKINKLNESHHKKREEARDHFGRKLNNLDILMNRYIEPLNKVKFKNSLL HERRKYLAERWKVKETQYIVTLNQIKEQINQTRAKLTAVNMHRMQRDESPFRNPIPSE DPLEVFLANDPIRSMNFGSNPERDWANAFMNTNFEIKFDADINEKEKQINMLQESCRV LHQRKLRLSKLLKEKNQTENPEK" gene <78617..>78904 /locus_tag="TVAG_312420" mRNA <78617..>78904 /locus_tag="TVAG_312420" /product="hypothetical protein" /note="transcript TVAG_312420A" CDS 78617..78904 /locus_tag="TVAG_312420" /note="encoded by transcript TVAG_312420A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07843.1" /translation="MTSTFELQIPKSKKWDDPNPSDAMPPFQSEHYDAFIPNTSGFKM QKIVNLIEKDGKLFLEVEIPNEPETREVDLNMMRIMYPELVAEFLAEKYLD" gene complement(<79719..>80009) /locus_tag="TVAG_312430" mRNA complement(<79719..>80009) /locus_tag="TVAG_312430" /product="hypothetical protein" /note="transcript TVAG_312430A" CDS complement(79719..80009) /locus_tag="TVAG_312430" /note="encoded by transcript TVAG_312430A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07844.1" /translation="MSDYESDSDDPYLINAGLPSGNYYRIRRAIIRLEQKDLDLQTKI HDYQIQNQKLKEKLARLRVKAAETDKLEARFEKISSHLIESPTTQNPYSPAK" gene complement(<80329..>81096) /locus_tag="TVAG_312440" mRNA complement(<80329..>81096) /locus_tag="TVAG_312440" /product="hypothetical protein" /note="transcript TVAG_312440A" CDS complement(80329..81096) /locus_tag="TVAG_312440" /note="encoded by transcript TVAG_312440A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07845.1" /translation="MGALFSSPRKLETKLLVKQDELKSILISKRKLEKWHTSHTFFLK LFIILFSIQFLIFLIVSYLYKFLTIQLIQDEFIFFFIVISIFYLIRAFISYWINSAAE RSLALRFELEKCFKEYTSQPGFQKIKKALKQRGEYYEIDFDQVLRLEYFSEERVINNQ SFWARLSSILARNGPDYRYAIICPYCRSVNGTVSPEEKDKVEYKCMYCRSRVSFDKVI KEYSKEDDEDTLHDLEEKPEVEAKKEEDDEGDLADLK" gene <81904..83772 /locus_tag="TVAG_312450" mRNA <81904..83772 /locus_tag="TVAG_312450" /product="SRP54-type protein, putative" /note="transcript TVAG_312450A" CDS 81904..83505 /locus_tag="TVAG_312450" /note="encoded by transcript TVAG_312450A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="SRP54-type protein, putative" /protein_id="EAY07846.1" /translation="MMFEFYVFQAGGLVLWPIDCDPTKKTITVVNEYIQKQLLEGKLN EDVYVKDKMACLVTQDPAFNIFVAVTLHQQVAQQINYLSKLLEDVCAKFTHQYQQILK RSDVMLTPNLFDRFTVDDVVDKYRGTVGIQINQPKITIADLDDDSYEEPNKKAQRSKS EPGRKKSPSKERIRYTSKSKENIEEQSTVVGLEEVGKVERIEVKQYNMDDFTGVFQAN PNANKSFFSGILSGIVGEKSLDIKTLEPFLKEFESHLISKNVASAIAHELTTAVGQKL DGTKCGTFQSVKTVVMATLREQIERILTPHRSIDIIRDIQLARKQGKPYVFSFIGVNG VGKSTTLAKVAYLMKSHDFKVLIVGCDTFRSGAVKQLAEHAERLGIELFQRGNDRRDP VPVAKDAIQYAIDKKIDVVLVDTAGRMQNSEGLMKQIARLINEVKPDLSLFVAEALVG GNGSDQISSFDMNLKRYAGVKDAKGIDGIVLTKFDTIDDKVGAALTLVYETGHPIIYL GVGQTYRDLRRMNPEFVVNTLLSGF" gene complement(<84055..>84363) /locus_tag="TVAG_312460" mRNA complement(<84055..>84363) /locus_tag="TVAG_312460" /product="hypothetical protein" /note="transcript TVAG_312460A" CDS complement(84055..84363) /locus_tag="TVAG_312460" /note="encoded by transcript TVAG_312460A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07847.1" /translation="MKKGSKAQPRILFFSPFSNSEEPVIYTLDKNGNLTKEATELMKS GFPIKEEPCQIIQDNFIDPIDDSYTYINQDLNLLDCTPNFGNVTDLLLDSKDYISLDF " gene <86094..>86468 /locus_tag="TVAG_312470" mRNA <86094..>86468 /locus_tag="TVAG_312470" /product="hypothetical protein" /note="transcript TVAG_312470A" CDS 86094..86468 /locus_tag="TVAG_312470" /note="encoded by transcript TVAG_312470A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07848.1" /translation="MTEKGDFPPPESDEEKREVPLFDKDFENLLKSDPDGLNRFKRKS ETEEEPDVIIGTPPINFSNKKKDYFPNELTLNSQKPIEKKRISFASPPLAESPPIAER NKQPRQVHFLAQPIGPGKKSEN" gene <86522..>87865 /locus_tag="TVAG_312480" mRNA <86522..>87865 /locus_tag="TVAG_312480" /product="hypothetical protein" /note="transcript TVAG_312480A" CDS 86522..87865 /locus_tag="TVAG_312480" /note="encoded by transcript TVAG_312480A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07849.1" /translation="MNEPHNSPENGNLSNNDAHAAQFWEDSMHTANSSSIQSDDASEV TSAISKNQNNHVYFNNQPTEEEEEEFETQSYAADVGIQSPRRNHDDLIGDSTYFTADN IITNAEELFREMDRISQLDPKDLPQDEEEEIQQNISTNTDQSDISHNVHVMPPMNPSH STPGNSENSGNQDNIPIRVFSEEEQPKTESDLYEFILDRMSNLVNVSKTLFPDIDDEY LLIKNLAAKGSRAFEMSILDEKIKQYKLSNATFKEELSNQPKLNMESVKLKREIQNAK KIIERLKKAPPPQIPTTNSMTIPNHPEIGHPISMQAHIMKEKRSVEELQKQVTDLQEN LDKLNKRIALMSQTKSSYVYDPSLLSPTKPPPKLKLPRKKVKVKKAKTIDAADNASET QSKKRKKKKSKRSKTVDPTIQHESNTEASDAIKSEASSMKSHKKRKVVKKVQKTK" gene complement(<88221..>91340) /locus_tag="TVAG_312490" mRNA complement(<88221..>91340) /locus_tag="TVAG_312490" /product="hypothetical protein" /note="transcript TVAG_312490A" CDS complement(88221..91340) /locus_tag="TVAG_312490" /note="encoded by transcript TVAG_312490A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07850.1" /translation="MNILFLQLLAFSHSQELQDFSICVTYENVAQSFCPNDVNATFKL SKKKEADQKFYNWTVEEDFNKFSGTNYLTIYIDCLDVENHSIGIDVYAVKDAKHIRIV GPNPLNRSTFIFNVNNITTFDDIELNNIVAVKDNTTSMFMEKLRLVNTRFDGFHKSSL FYGKELYSDLNSVANLSFKFDKLFYDCGETEKFYPNYYYDGVIFTSEITFRNFSSGSS LYQYGSDIIIIPKSREYGFRKTNFRSIDRNDINYYIEMENGEFSIGCFFSNKAVAFYH VELKLVNAKLQILDGKWNGEPRFFFDLINSEIFFHTNDIFYQLSDNVSNSSLKTDVDE LHIESIPSGCISEISFSKNFVIDNLYIDDDSEFDFDDGEIDLDDGEIDYDDEDPYNDD QTTNITIHAEELTIGYLYVDWNFTNFTIFGGKVYIKEIDGTFDTIFIENLGFLPEGIL IDDRQSVPQIIVSNPVTDDIDTCFKFHSEDMSVLMDDFRLLTIPKTSKVRISPDVEHN IFPCKLETIEEEDNIVYTMQYILNSSKFCVSDDGTDECGIDNCNKTTETYLSKLIKDI PKQLYPSISLSFFLKTSKPFVVDVYDPEYPFGSLYFEGRNNSVLIINDYSVATNLSIW NLKLEVQSSKTFVNYLNVTNSTLPENIAQCTFNKLDIDEGTFAKYGFNRNSKIIDTLV VYTKTLYMTDTGFSPDIPLVTDEKPLIIVRNVSLVTRSGGFNGDCRVKIEPDERIEFT TNNYGDIKFSLEGTAECNIHFKAFFPADIVKTYDHDCLYNFHPHFWGSKLTSARKFCS SIDIYPDNEITIVLGDEAYKCHGKVENKFMADMFIDKLDIIGTVKLHNVILNKTIHLD VGTYLSVDTLSIPFDDFLLHVKWDLKNAPLIMARNFSAKYAKSYSPFIFVYPEEPVDF EEFNNSRDIFKFGIPIFCTENSDYPGYISSYVNLFYFNDTIPVVTTARFPYGVTHHPD SCIKIIPYEPSPKNGKVRGPAKKGGWIFIVVISFILLFICCIFFIISFMCPKKIINTY VNTVLGVLE" assembly_gap 94762..94861 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" repeat_region 94882..98190 /note="virus-like, repeat family R371,R1794" repeat_region 98223..99041 /note="repeat family R1479" assembly_gap 98876..98975 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" repeat_region 99110..99448 /note="repeat family R1479" repeat_region complement(99456..99761) /note="repeat family R105" repeat_region 99825..100361 /note="repeat family R105" repeat_region 100366..101163 /note="repeat family R105" repeat_region 101194..102429 /note="virus-like, repeat family R105" gene <102465..>102884 /locus_tag="TVAG_312500" mRNA <102465..>102884 /locus_tag="TVAG_312500" /product="hypothetical protein" /note="transcript TVAG_312500A" CDS 102465..102884 /locus_tag="TVAG_312500" /note="encoded by transcript TVAG_312500A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07851.1" /translation="MAKFISVNKYMSGLKEELDPFTYLNVYFYHFEKSSFSKVWNIEP VKFAIVTKNGAKFEDLDIEGLLTVKESFDRRFSNLKEGKAYKLVIPYEPKKTDDYEYY ESKIVEVQGKLGKKILESKPVFAPKEEENIDIDPEMF" gene complement(<102901..>103344) /locus_tag="TVAG_312510" mRNA complement(<102901..>103344) /locus_tag="TVAG_312510" /product="hypothetical protein" /note="transcript TVAG_312510A" CDS complement(102901..103344) /locus_tag="TVAG_312510" /note="encoded by transcript TVAG_312510A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07852.1" /translation="MSSDFAIYIRDKLFDSKTSVDHKILHSVNKKGEFVLKFCFWEYD KNHKTLSRAVLKFVNDGLVDRDDADWKDEVQQKFLECKEDTCAVLEDEIENRIDELLK DIELLHKYGSEKFDISPPEKKKREKKVEEEKKEPEPIPEKKKFDM" gene <103381..>104256 /locus_tag="TVAG_312520" mRNA <103381..>104256 /locus_tag="TVAG_312520" /product="hypothetical protein" /note="transcript TVAG_312520A" CDS 103381..104256 /locus_tag="TVAG_312520" /note="encoded by transcript TVAG_312520A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07853.1" /translation="MLEKKFADIDKKFENVLNKNKRKLENAQIKPIHDKFLFAQNGIT GLSAPPGSGKTFTYLKMAAQQQELDEKNPFYELVVICSTSGQFDQTVNSFKDIIKKSK LVCIKDTELLDWIKKYQRRVLKYNAINEYINSKFKDPNEEMQRILEKKHFRNKQKEIE YISKKLQSYDWKTYPHRCLLILDDFASHPLLKNREQDMCRILKKLRHFNISVVICVQT AKSLSKDVKRILTDIILFPGLSEDDFMELMKESMAGKFDRHELLEKYKVIQDPHTSFR IHIYANKVQIVKSQA" gene complement(<104698..>105558) /locus_tag="TVAG_312530" mRNA complement(<104698..>105558) /locus_tag="TVAG_312530" /product="hypothetical protein" /note="transcript TVAG_312530A" CDS complement(104698..105558) /locus_tag="TVAG_312530" /note="encoded by transcript TVAG_312530A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07854.1" /translation="MSTTENTTTVIVHEAINEEYEWIQYNKQLRLIRSVKDDMYQMQS ILTACFAPDTKLPKDWFRNQSTIELLSEAQRDILFSENSEEQRVGKKSHSPKLYENRE KLPNGLRGYYVHRLLVNNVAQWASARYSWYVCKLLDELHRQERQEMEKKLQAKDEVIE AKDKSIQKRIPRSVPKGKEKSYKYMIYTEELEKEEDRDMVMLHLVRRNNKSFYDLAKI YKSDRNWFYRENIPISMTPNEDVKQIVQDTLPQTHYDIKGCTILTFKEDLPLLKEKIT EYFDNFKQVG" gene complement(<105902..>106840) /locus_tag="TVAG_312540" mRNA complement(<105902..>106840) /locus_tag="TVAG_312540" /product="hypothetical protein" /note="transcript TVAG_312540A" CDS complement(105902..106840) /locus_tag="TVAG_312540" /note="encoded by transcript TVAG_312540A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07855.1" /translation="MSTIGTTTIQTTTSLNSLVMNPTSMLVEMKSFIPSSYTFETEIQ KIKPELLTSNLDCSAKDETNEQYLYDMQDLIDHLPKLPEIQQQKLTIPEFDEIEVKTT DSVEIKKFIRKVNYEFLGFHCNHKVMDKDCDMVYKNVSDIYKSEEFKTYDNFVSLVAE CVWQIRDKDKRCKIWNEQIRPTYSELKKTIDALVVLAGKVSMYNAKMNPQCSKCKAAI RKYNYSVKEIERMRNDYADLKKEVEKPAEDKMDMLAFLNKNYPTADDFLLSDVKKKYK ETFGIVKIFDILREEIEATKLFRISNIHRTIHVKRL" repeat_region complement(107741..108601) /note="repeat family R321a" gene complement(<109312..>109548) /locus_tag="TVAG_312550" mRNA complement(<109312..>109548) /locus_tag="TVAG_312550" /product="hypothetical protein" /note="transcript TVAG_312550A" CDS complement(109312..109548) /locus_tag="TVAG_312550" /note="encoded by transcript TVAG_312550A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY07856.1" /translation="MTNKVTEAMKQKFLVEYIKSGTIPEGFYIHTMKDGRVQFRKIKQ PLDREGILRKIKLHEDNIAELKKKLEELEKGREL" assembly_gap 109772..109871 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" mobile_element 109876..110334 /mobile_element_type="transposon:transposon-like, repeat family R128a" CONTIG join(AAHC03002836.1:1..9229,gap(unk100),AAHC03003452.1:1..7180, gap(unk100),AAHC03000680.1:1..33122,gap(unk100), AAHC03006148.1:1..3941,gap(unk100),AAHC03011544.1:1..1970, gap(unk100),AAHC03004700.1:1..5206,gap(unk100), AAHC03000668.1:1..33513,gap(unk100),AAHC03006062.1:1..4014, gap(unk100),AAHC03002537.1:1..10796,gap(unk100), AAHC03003992.1:1..6147) //