LOCUS DS113358 126065 bp DNA linear CON 15-DEC-2022 DEFINITION Trichomonas vaginalis G3 strain G3; ATCC PRA-98 unplaced genomic scaffold 1047229024185, whole genome shotgun sequence. ACCESSION DS113358 AAHC03000000 VERSION DS113358.1 DBLINK BioProject: PRJNA16084 BioSample: SAMN02953626 KEYWORDS WGS. SOURCE Trichomonas vaginalis G3 ORGANISM Trichomonas vaginalis G3 Eukaryota; Metamonada; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas. REFERENCE 1 (bases 1 to 126065) AUTHORS Carlton,J.M., Hirt,R.P., Silva,J.C., Delcher,A.L., Schatz,M., Zhao,Q., Wortman,J.R., Bidwell,S.L., Alsmark,U.C., Besteiro,S., Sicheritz-Ponten,T., Noel,C.J., Dacks,J.B., Foster,P.G., Simillion,C., Van de Peer,Y., Miranda-Saavedra,D., Barton,G.J., Westrop,G.D., Muller,S., Dessi,D., Fiori,P.L., Ren,Q., Paulsen,I., Zhang,H., Bastida-Corcuera,F.D., Simoes-Barbosa,A., Brown,M.T., Hayes,R.D., Mukherjee,M., Okumura,C.Y., Schneider,R., Smith,A.J., Vanacova,S., Villalvazo,M., Haas,B.J., Pertea,M., Feldblyum,T.V., Utterback,T.R., Shu,C.L., Osoegawa,K., de Jong,P.J., Hrdy,I., Horvathova,L., Zubacova,Z., Dolezal,P., Malik,S.B., Logsdon,J.M. Jr., Henze,K., Gupta,A., Wang,C.C., Dunne,R.L., Upcroft,J.A., Upcroft,P., White,O., Salzberg,S.L., Tang,P., Chiu,C.H., Lee,Y.S., Embley,T.M., Coombs,G.H., Mottram,J.C., Tachezy,J., Fraser-Liggett,C.M. and Johnson,P.J. TITLE Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis JOURNAL Science 315 (5809), 207-212 (2007) PUBMED 17218520 REFERENCE 2 (bases 1 to 126065) AUTHORS Carlton,J., Miller,J., Delcher,A.L., Schatz,M., Schobel,S. and Fraser,C.M. TITLE Direct Submission JOURNAL Submitted (23-MAY-2005) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA FEATURES Location/Qualifiers source 1..126065 /organism="Trichomonas vaginalis G3" /mol_type="genomic DNA" /submitter_seqid="1047229024185" /strain="G3; ATCC PRA-98" /db_xref="ATCC:PRA-98" /db_xref="taxon:412133" /chromosome="Unknown" assembly_gap 1777..1876 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" mobile_element 1898..2302 /mobile_element_type="transposon:transposon-like, repeat family R2375" gene complement(<2395..>3705) /locus_tag="TVAG_420080" mRNA complement(<2395..>3705) /locus_tag="TVAG_420080" /product="hypothetical protein" /note="transcript TVAG_420080A" CDS complement(2395..3705) /locus_tag="TVAG_420080" /note="encoded by transcript TVAG_420080A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09386.1" /translation="MLSDNMKQKSEKKLIADFDAVSLYPSAIARLYTLEGIPKVLKDE MLSTEYLMRHLFDDDQKEPIGEKFMSGFFVLIKIKEIGIHRHFPLIVCDPELNPELNV PRSSNTCCLMYVDHITLQDLIKYQGVKCEVLQGYYYDGNRDIRIRDEVKKLFELRLKY KKEGNPLQENIKLILNSIYGKTILSPIESKITIVNDKDAIRYAIRNYNHIVKFEGLDG SDKTIFKLTKSICRHFNFCPLGVNILSMSKRIMNEVFCTAEDMGLQIFYQDCDSMHIF NEDIPKLAAEFKKRYGRELIGKNLGQFHSDFAEITPGKQSLAYKSIFCGKKTYIDLLT NDLNEVAFHARCKGVKQDVLALTANEMFPEAIQCYYNEDKNIHIPVGTYDKDSEFSLM KLYKALYDGQEIGFDLCKSSSPCFAEKFNFSITTKTSFIRKLKF" repeat_region complement(3761..5917) /note="repeat family R488b" assembly_gap 3773..3872 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" repeat_region 6009..6482 /note="repeat family R488b" repeat_region complement(6928..7755) /note="virus-like, repeat family R299" gene <7863..>8237 /locus_tag="TVAG_420090" mRNA <7863..>8237 /locus_tag="TVAG_420090" /product="hypothetical protein" /note="transcript TVAG_420090A" CDS 7863..8237 /locus_tag="TVAG_420090" /note="encoded by transcript TVAG_420090A" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09387.1" /translation="MTLKRLLTDFEYYLIDALTDPQNCVESSLSFKIEGTTHFVFTYV LKEYDRYHNEVNQTLIKFVDKKLVNNEYFKREDPNTAGDDEEYRQVIEKNNARLDAIE KKFNECLTNTYEYLMRWEAKWK" gene complement(<8518..>9459) /locus_tag="TVAG_420100" mRNA complement(<8518..>9459) /locus_tag="TVAG_420100" /product="hypothetical protein" /note="transcript TVAG_420100A" CDS complement(8518..9459) /locus_tag="TVAG_420100" /note="encoded by transcript TVAG_420100A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09388.1" /translation="MISTIGSTTLQTTTSPNSLVMNPTSMLVEMKSFIPSSYTFETTI QKTKQELLTSTLDCCAKDEQNEQYLYEMQDIIDHLPKLPEIQQQKLTIPEFDEIEVKT TDSVEIKKFIRKVNYEFLGFHCNHKVMDKDCDMVYKNISDIYKSEEFKTYDNFVSLVA ECVWQIRDKDRRGKVWNGQIKPAAFELKKTIDALVVLAGQISMYNAKMNPQCSKCKAA IRKYNYSVKEIERMRNDYADLKKEEEKPAEDKMDMLAFLNKNYPTVDDFLLSDVKNKY KETFGIVKIFDILREEIEATKLFKISRIHNVYHVKRL" mobile_element complement(10102..11187) /mobile_element_type="transposon:transposon-like, repeat family R26b" repeat_region complement(11207..13843) /note="repeat family R410a" repeat_region 13861..14625 /note="repeat family R25b" repeat_region complement(14822..15436) /note="repeat family R325b" repeat_region complement(15860..16714) /note="repeat family R325b" assembly_gap 16745..16844 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <16908..>17306 /locus_tag="TVAG_420110" mRNA <16908..>17306 /locus_tag="TVAG_420110" /product="hypothetical protein" /note="transcript TVAG_420110A" CDS 16908..17306 /locus_tag="TVAG_420110" /note="encoded by transcript TVAG_420110A" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09389.1" /translation="MKTFKAIAWLDNDDCFKKIFKFSDSKMSIDDLRGMLPSTFTVEG SAGLLTRLSIGGIWSRENIVIKSSISEFAEESILCLSNYMYSPPKHYSITNFVSKFNI RLVEPSSMKDVVLPKDGKDGLIIEMILIAY" gene <17532..>18056 /locus_tag="TVAG_420120" mRNA <17532..>18056 /locus_tag="TVAG_420120" /product="hypothetical protein" /note="transcript TVAG_420120A" CDS 17532..18056 /locus_tag="TVAG_420120" /note="encoded by transcript TVAG_420120A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09390.1" /translation="MVAWAALGAMGTKALAFGAKALGAYDAVNKMSGGRVSKTLDANK GKIGGWVAKKLRLNKIGLINKASNLVATESENALGKDDEFAKHAKDFNDQMKGETMHL NRFDGTKENVSSPPAVYPYGPYGMYGNPYERPFDPLTGGSNWYHYGRRRKTVKLETDV KKATKKKPRKRVIK" mobile_element 18678..18935 /mobile_element_type="transposon:transposon-like, repeat family R8_Tvmar1" gene complement(<19013..>20329) /locus_tag="TVAG_420130" mRNA complement(<19013..>20329) /locus_tag="TVAG_420130" /product="hypothetical protein" /note="transcript TVAG_420130A" CDS complement(19013..20329) /locus_tag="TVAG_420130" /note="encoded by transcript TVAG_420130A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09391.1" /translation="MSTRQNTSNEGVLDTDVEDFIARQILKYPRERLALSRLLDSKPP KAINCMKKAIAIILFYVIGICLGGTLYAQSIIQNHIDKMNELNYISRSRFFGALSNVC LMGEYFTQHNAIGYYLEQFGNYLKTTADPHPLILMNESMIHSMSNFTKLSSENFDTLM NKLSKQSLEGADIYDYASSLLNVNLPQIVFENHCLINQTNLASLSSIYAQMFAIQRKV SGYESVLTINIDPDVCELANNFVNLYSGSVILYAQISSNHRKEAEKIKKIFKTYSSIV PILSYLIIDVPIVVLHFMSLKTEKDIIQIINSVDKKAKNEAKDNLRSNATEESVVLPE FHPKSGLRLVLLFLYAFIAVVFLLIILVACIIVMRITDNLVKLNEWNQHSASRQSLAA ESLNSLLNCIIMIDVPTSYLPSLYPSFIKLAYFIMNKLKESDNNLI" assembly_gap 20811..20910 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <22388..23100 /locus_tag="TVAG_420140" mRNA <22388..23100 /locus_tag="TVAG_420140" /product="ribosomal protein S3, putative" /note="transcript TVAG_420140A" CDS 22388..23038 /locus_tag="TVAG_420140" /note="encoded by transcript TVAG_420140A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="ribosomal protein S3, putative" /protein_id="EAY09392.1" /translation="MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTP TRTEIIIKAANTKEFVDNHGRRLQEVRMMIQKRWRLKEDSLEIFIDRIQRKGLSALNQ LESLRYKLIARIPARRAAYSIIRFVMDAGARGCEVAISGKLRGARASTSKYKEGYMVK SGDVTKQFVTQAVGHIPMKQATIGIRVLIMLAQDPSGISGPKESQPDVIKVHEAKD" gene complement(<23454..>24701) /locus_tag="TVAG_420150" mRNA complement(<23454..>24701) /locus_tag="TVAG_420150" /product="hypothetical protein" /note="transcript TVAG_420150A" CDS complement(23454..24701) /locus_tag="TVAG_420150" /note="encoded by transcript TVAG_420150A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09393.1" /translation="MSDSSSSQDEPENIQPPVEDQQNDEPPPAVTAPPPQQQKSPEKK VQYYMRGGQQFQENNIVPVHTVFFFSIPYKIDQAEFKKFVEKFGEVQNIYEKCENGNY FVTYYDLRSAIAAVEQDRNETLNDRVVRMNYAYKARKQRKDPLCATVSVHLQSTSGVT EAEVRSAFSTFGDILTIRKDSDNVYVVKFYDLRSPTKAVECKDPIILGGQPCKVELKL GEDDGLEQEEPEPPRNQRRSDSHDRDNRRGHDRDNRGRRNDHNNNHYNQPPPPPQYGQ YPQYPYPYMPPYNQPPPYGYPPYPYPRPQAYGQQPPPPPQGYGQQPPQNHYGAPPAYP PPAYGQPPPPPPQGYGQQPPPSYMPPPQAVPPAPQPQQQTPPPPPPPPAPAPPQPAAP QPPSEPTSNRRTLQELQMLLSGK" gene complement(25073..>25671) /locus_tag="TVAG_420160" mRNA complement(25073..>25671) /locus_tag="TVAG_420160" /product="hypothetical protein" /note="transcript TVAG_420160A" CDS complement(25087..25671) /locus_tag="TVAG_420160" /note="encoded by transcript TVAG_420160A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09394.1" /translation="MLLAVFNIGVWAESSIQEPEPEANGLFGSSKTTTSDDPMAMLST TKHCSVSNYNVKDPTDAAYSIYAETGLDYNQIKNFLTRSKFSSGSKTLLSKFAMSPGT SFDTRFSTYNGAVLYSVKTGDGRFAIKVGKVNCQTFLRATSTTTTKKRSWFVFRSTSS HKNARALKAWELDALCKHALAKVAPEMETYKNFK" gene <29596..>30222 /locus_tag="TVAG_420170" mRNA <29596..>30222 /locus_tag="TVAG_420170" /product="ankyrin repeat protein, putative" /note="transcript TVAG_420170A" CDS 29596..30222 /locus_tag="TVAG_420170" /note="encoded by transcript TVAG_420170A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="ankyrin repeat protein, putative" /protein_id="EAY09395.1" /translation="MPDDASMKYAIASHNIDFVTFLMYEYHIRIDLKECAKFNNLNAF FVHFDQTNDINDDGIPSLFELFKSQGSDINAKSITLGYSALHSTSKYNCIEESKLLIS YGININAKDNQGKTPLIVASKSNHEEMVALLVSYGADVNEKDNTGQTALHYAAAIDND KAIDILLSHDADINAEDNNGEKPALRLHKKLVHGFHAVSKYFHFWNPN" gene complement(<30460..>33162) /locus_tag="TVAG_420180" mRNA complement(<30460..>33162) /locus_tag="TVAG_420180" /product="KOW motif family protein" /note="transcript TVAG_420180A" CDS complement(30460..33162) /locus_tag="TVAG_420180" /note="encoded by transcript TVAG_420180A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="KOW motif family protein" /protein_id="EAY09396.1" /translation="MSSSSDSSDSRSDMSELHSEDDTGEYTQPKPHKSNGFSVRNFQE REALDQSDSSDEVDEEEEVANEADNQFLDNDDDVVDQKVFRDYDKRRRLEERKENRMR LEMLNQISKDYAQVDETEFIFDDSALSQPFSSYRIALEPSTGSNQLFHVKCKPGKELV VISYLYAKFAHSPSQYNLTFAAYTPKISSGFIYVEARTLADANTLCSELPFIMNLNRM KNLKYSEMAKAMTIPRTEVDFHPGNFVEILKDSQSGYFVKGDIGQVINININRNKVMV KLIPRIDYDRIESDTLPEKKSKAAKEVRIPQADFQPERIINHATITDTTLQIGDSTVE FKEYDNALFYGPFLYHEIETKKLQKVAYIQMDFGKKFQDNFYDFEQRIPYFKNNMYSA LGLTNSTTFNQGDIARILEPHEYQDVIVDVLGVQGNIIHVAPRATNEVEKAQYDGIEF DIQSDLLEKYFHEGDRVKIIAGANRGKIGIVLGVDMKTFTAQIQITSIDAIVSEKVAN LAHTRREEEIQIVLGQYRLNDFVVLLDKQRGVIWRIENDIAFILLDTGVAISADLSRI LCKARDDTVRASNGKAITISSVVKVKDERYNATVIHTTHSKVFLQSQQKQTMGGLFVR PPSDITVFTTPKNVAPSAGSGGFVIQRPKQDLSLKGQTIKIIKGPYKGLLADVKEATG EDMHVILHTTKKIVRLFRTNGMFTVVKKDNNDFMKRLFSKDDDLPAESAPSTTQQQTY DAPTYAQTTTQQEPAPSNYGNAYNSVYSPQSASPSYGSTTYGSPSSYAYNQPYGGYGS SYGDSYGSPASSAYAYGGQASPAAVPYGSPGAQPYGSPAAAQPYGSPAAAAQPYGSPT AAQPYGSPAAAQPYGSPTAAQPYGSPTSYSPPYGNMYYQQNKQN" gene <34229..>35578 /locus_tag="TVAG_420190" mRNA <34229..>35578 /locus_tag="TVAG_420190" /product="hypothetical protein" /note="transcript TVAG_420190A" CDS 34229..35578 /locus_tag="TVAG_420190" /note="encoded by transcript TVAG_420190A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09397.1" /translation="MVFPQVSDLFYVAAMTATKVYPKSHMWTKNAFDLYFNRQFGFGR LNVKEMCAAFHDLSVSYGSPVKIVLKKTVNMPLPNEEVNFTFEFKEKYNSVVCVDLRI HSKKLSFGSLNPHVISPGGTRSELKLITIDSIDYPIKSVDLNSYQFLGENPKGNWTVS FRINDYSDHGTLETLELRLYCTKNGPLSSQINQPDGNDPYNISDSYIEFPSNLLNVTA AENVTFNIKLKNECVKKEKYSIWFAEPDGENRVPLTEAQIINNYTQVNIPYFPSVFKD QMDSILVIDSFSPRCLYSSRVKLNYTNKFKPGIISPKNKAIISSAETDLEVSYALQLP KVVYAKFTGSSAVSILSPDSKKLLKRMFQKNIGYIHAKGIVPNTKNFYVQISPASTNL GLDFPVMTIEMFIIEQNGKFAPMKLVNNAAGISFLVLFFVSLITLCTYRTVSLCMMK" gene complement(<36131..>38704) /locus_tag="TVAG_420200" mRNA complement(<36131..>38704) /locus_tag="TVAG_420200" /product="hypothetical protein" /note="transcript TVAG_420200A" CDS complement(36131..38704) /locus_tag="TVAG_420200" /note="encoded by transcript TVAG_420200A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09398.1" /translation="MANIINVWDAIVQRKIDNAQYILITYADTLIQNPDPCSIYLFLL MTYKANQVIPAKIASELKNFPEDVISIARSFGGVLACAFLQQILKLTISDMEIITNRY PNHCGKLFMHVFFQQNSQDTTISTDYMSIIEAIPVVFDTKPKLEADTFIKLFFRNWDQ DPGLIKMYSTFTRTFVSAIQSLPSVIHVKTAEILIPYLNTFTKVAFETKDPLILFETV DVVSKIVYTREIGPHITPVMTSKICLSLLKLLCVSNKNYVEIGLDRAASSILSGNPIF MTIVPFLVHILNDLKIHPKTSVVSALESALLYFTVNDITKAIDSIEKKMINLLNTSNT QYSQSASIYFLNRSSGNDLNRISSKVITANIIKIFTAIFSKSFLTDTTMSFVRLVHGY AALNIPIPPDLEDCLKSINISYNLADGMYSLIDVADTLKTNNNDLLTNLVGIIITHFM IYSTKKDPRGSAQLMILAIELSRRLGDFNFIEDFLSRIKNMPDIIEVLVSHLSASNVV SFSPDINPVCIGVSSIDALQVLNEESEKNAQLLTARYTSKTSHRFDIIEEEDKSDGIE EKVETLKSEEEDFENSNPSSQTAKLFSNLKEKIISQNLRQLLNTPTNSDQKIENDKNR EFKILSEKTAKIERKKSKPTNSDSTLLAMYCLGLFGENRYETLPSAGNIMQAFRRVIS TTVKKEAKVPLYFARGGKFDWKWSETSKDFQSFAESLGRKDKSTTRKFGDWRLDGTFF VVPADSEYKPKCEDTMNDVRVVWSEDGITISSKDFNKDKNTTVICVQPLKTGFVRVTT MNAKVTSLLANTNIVRAESAPSMICTTVVTLCLGNEFNTPFTLGIPNKENIIKMVPQY V" gene complement(<38749..>39615) /locus_tag="TVAG_420210" mRNA complement(<38749..>39615) /locus_tag="TVAG_420210" /product="hypothetical protein" /note="transcript TVAG_420210A" CDS complement(38749..39615) /locus_tag="TVAG_420210" /note="encoded by transcript TVAG_420210A" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09399.1" /translation="MQQEFDLLSAAAKSGNNSDCSKYFKEFCAAFLKDLCNEIPASLF SKLIKKKTAFTAGLDYFNIIITSDIMSKIQLIDFHQGISSLFKLLMHYRMKKEIHFQS FDLFLTILDYFENTNDTVKLKLLGDLMVYGMDMSQFIENPESLYNCYIPDTKIEPEYN PKQFVKLYEKFLKHFKQHQSAFTYWWTIICESFLPVIFNSTSSQIKLIKNPKYNLNLF ASALLDPSIDASKMSKLYPEYILLVISETAENTAISFFEKYSDYLSNIVISAADRFCS SILHFLTLQSQF" gene <40121..>43009 /locus_tag="TVAG_420220" mRNA <40121..>43009 /locus_tag="TVAG_420220" /product="hypothetical protein" /note="transcript TVAG_420220A" CDS 40121..43009 /locus_tag="TVAG_420220" /note="encoded by transcript TVAG_420220A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09400.1" /translation="MNPVSLRKRLRRIQRQEQETAEVRSQTNKQVENNKTVEFQQLLN STIIACKKLFSKCLNETSSKAESKRSLMAAIFQSRILIGRLLALYRWHRQSTISSSTL TEGKFNNMINHVVRNLQNINSEFSKVNNLRPEEEAEAEEKLEVILANEISYSTIFIKL ISYDFPNSITNVIIRSTDFSITIFDRVTLSIRLTKDEQFKLKNMSFKTDFRIKRLQVQ NIIAAVSSILDSGVNVFTRLDRFFNKCLNNIALAEFADKLMKYESKYKFTMQHKDGVI TIILPEGFSQFRTFNVYSQNQKIVVQSCHPQFLEGAAEFQYVTFNDTEPEFLIPKLFE TALKSFMKVYMDLLDKYVKPLILSLKVTQLNYHLYFEFNDKHVMTIGFEPSTCVASII HAPGIFINAEDVVHCINQGILNTRKVFRLLMNQYALTSLFFNNPNAFFWEKWKYYARD NYIPVISYSSCPDYRFKLCANQEVPSIELLLDQDEYKENCHKISSLPPAIAAVYLQIR KDLGSAAVSTKSRITYSPDSTSIAAIEFSPTGKYSVHIIGNKYNRCAYKIHGNFVSFR FSDYFAHISVSFSKLLNVAKQISQSDFINSNYDLYPTVDVNYMPEHIPAFHVSIRGML LLASTTRSVDLILRSDQGVKLEIEFARYCKVQQCIYDMITTGNAINKLSAFLSSAMMQ FCIFQDTFLAYSNRPSWSLSALSKDNYFSLIFQRHFTMNISWKSTHVFHVIIPKISPS LVLQIALRKFPGFSPEKRLSHPTLSVHTSQLSSLKMYIEDFFLDRDALLYAKFHPVQQ TDEKMKVFEPNEQSQWFHLQALMLNSGLEVRLSQWNPTADRILKAFSMFSQTRNLMRV RLIFMSRIAQRPESVGIAVARTMEEISNLPGIDWMSFVRKATFEQEQEIQVKFSSVVF EHSQFSIQISLVDDTTRVRVTSDIEGADDVVNFSTFNKWIGNIIHKYM" gene <43205..>43642 /locus_tag="TVAG_420230" mRNA <43205..>43642 /locus_tag="TVAG_420230" /product="hypothetical protein" /note="transcript TVAG_420230A" CDS 43205..43642 /locus_tag="TVAG_420230" /note="encoded by transcript TVAG_420230A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09401.1" /translation="MSIKLNIVETIPTSLTEIQEEAWLVINSEKSSSPVSTIPFLINK TSYVDSTISLAVNLDNIENSFLYFTLCCYYQGNDDIIPLARTKVRIGNIPLDGVTHFQ IPLYGHLNIDDQIITITLVGTLLKSDQPDLNIQEFIGSNTYIY" gene 44140..44847 /locus_tag="TVAG_420240" mRNA 44140..44847 /locus_tag="TVAG_420240" /product="hypothetical protein" /note="transcript TVAG_420240A" CDS 44267..44788 /locus_tag="TVAG_420240" /note="encoded by transcript TVAG_420240A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09402.1" /translation="MRDYDVTTDNFIYIPKLERILQGKLLEEAPPTDWETVPSVARTL NFAFVVRDKQYYSGEPGYVTFDTVTLQVTDDGPFKITSLSSASSFRRGSKTTIQWDVA GTNAGSINAQKVTIKFSPDRGQTWQDLHSNVDNTGSYEITFPNVATTQGRIMIKPDDN VFLTINTADITLT" repeat_region 47200..49512 /note="virus-like, repeat family R3a" gene complement(<50000..>50296) /locus_tag="TVAG_420250" mRNA complement(<50000..>50296) /locus_tag="TVAG_420250" /product="hypothetical protein" /note="transcript TVAG_420250A" CDS complement(50000..50296) /locus_tag="TVAG_420250" /note="encoded by transcript TVAG_420250A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09403.1" /translation="MDSIDKKVHEKLDEEELEDTVENAKHLFEEEVGKMCEKQLEHER EICYGYRDSSYELDQWEQEDLKREFREYELAKIAFEAAEKKLKVWGRFVKKYCE" gene complement(52220..>54101) /locus_tag="TVAG_420260" mRNA complement(52220..>54101) /locus_tag="TVAG_420260" /product="hypothetical protein" /note="transcript TVAG_420260A" CDS complement(52269..54101) /locus_tag="TVAG_420260" /note="encoded by transcript TVAG_420260A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09404.1" /translation="MFTTKEANKQEQLRGQVYSVSGPVVVAENMTGAAMYELVKVGSD NLVGEIIQLEHDTATIQVYEETSGLTVGDSVIGTGKPLSVLLAPGLMTNIYDGIQRPL KDISDQSHSVFIPRGVSCDPIDLKKEWSFKPANFKEGDNVTGGDIIGYVNETSMIEHR IMLPPKACGKVKYIAEAGSYDVLHPVIGVEFDGKVTEYPILQEWPVRTPRPYAEKLVA DFPLITGQRVLDCLFPVVQGGTCAIPGAFGCGKTVISQALSKYSNSDAIIYVGCGERG NEMAEVLMEFPELKVEIQGVEHPIMDRTTLVANTSNMPVAAREASIYTGITLAEYYRD MGYNVTMLADSTSRWAEALREISGRLAQMPADSGYPAYLGTRLASFYERAGRVSCYGN PHRSGSVSIVGAVSPPGGDLAGDPVTSATLQVVQVFWGLDKKLAQRKHFPSVSWTLSY SKYDDILRPYFVQFDPDFPNLRTEVRQILQEEQELSEIVQLVGKDSLAEPDKLTLEVA RMVRDDFLQQNSYTPYDRVSPMWKTFWMLKNMMHFNDLARHILTESGEKRVTYEAIAN HMSAEIQGLIRMKFTDPADGKEQCIENLRKLYQQIEDKFRTFSD" gene <55728..>56081 /locus_tag="TVAG_420270" mRNA <55728..>56081 /locus_tag="TVAG_420270" /product="hypothetical protein" /note="transcript TVAG_420270A" CDS 55728..56081 /locus_tag="TVAG_420270" /note="encoded by transcript TVAG_420270A; Probable pseudogene - evidence: frame shift" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09405.1" /translation="MFTTKEANKQEQLRGQVYSVSGPVVVAENMTGAAMYELVKVGSD NLVGEIIQLEHDTATIQFTKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSM SYFIRKVFLFLIYLS" assembly_gap 55925..56024 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<56699..>58039) /locus_tag="TVAG_420280" mRNA complement(<56699..>58039) /locus_tag="TVAG_420280" /product="hypothetical protein" /note="transcript TVAG_420280A" CDS complement(56699..58039) /locus_tag="TVAG_420280" /note="encoded by transcript TVAG_420280A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09406.1" /translation="MLDFSPDDQKKVIFSQLAASVLFANMILLPQCSVRLEMLFYTDL IFFQVSDKSKYLKNTNYDFSAEGDLQYEGLKELVLKYFRDDRVDLAHFIHCKMNQGLS VVRGVTRSDSKWQGFTSDATFGYHGRFELAFVHEIGHQIGAHHPFTFKPNGGFYATEV GSGVSIMAYPGRSNGDDVQPTNYPYYNIQNLDEITRFLATAYHVNTEPKEDQPPVIDD MKRLYYIPKSTAFLLQGSAHDNDDPVLYYHWETIDEYAGVVTRKTFGSTRTKGPIMRD YDVTTDNFRYIPKLERILAGKILEEAPPTDWETVPSVARTLNFAFVVRDKQYYSGEPG YVTFDTVTLQVTDDGPFKITSLSSASSFRRGSKTTIQWDVAGTNAGSINAQKVTIKFS PDRGQTWQDLHSNVDNTGSYEITFPNVATTQGRIMIKPDDNVFLTINTADITLT" gene complement(<58075..>58662) /locus_tag="TVAG_420290" mRNA complement(<58075..>58662) /locus_tag="TVAG_420290" /product="hypothetical protein" /note="transcript TVAG_420290A" CDS complement(58075..58662) /locus_tag="TVAG_420290" /note="encoded by transcript TVAG_420290A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09407.1" /translation="MLALLISLTLSANIWTYTRTSYEGQKCYQLNIAEFEKVLLSTQD TGAEFRIQLIDYNQELSYYKLKPIKMFAKEVRDKYPNEHYAFTGYKEGKPSEIIGLVW CFKVLKQFWMILPATIEIKKTITEYVLFNPDYLATRKLNEIDNFNSTINHILNQVDEV TAEFKHHLHDADSEGESIEQEWTILKLFDLYLSQP" gene <59011..>59319 /locus_tag="TVAG_420300" mRNA <59011..>59319 /locus_tag="TVAG_420300" /product="hypothetical protein" /note="transcript TVAG_420300A" CDS 59011..59319 /locus_tag="TVAG_420300" /note="encoded by transcript TVAG_420300A" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09408.1" /translation="MFLLSLFLTLSIQLQADLHTCDAVYSGNVLIKPGSCPNIVVQSS CTLIDEEAFYTSTIESIDCTPASQLTRIGFRAFYQCVNLKTVNLPSSLKIIQSNAFFG " gene <59380..>60420 /locus_tag="TVAG_420310" mRNA <59380..>60420 /locus_tag="TVAG_420310" /product="surface antigen BspA-like" /note="transcript TVAG_420310A" CDS 59380..60420 /locus_tag="TVAG_420310" /note="encoded by transcript TVAG_420310A; Probable pseudogene - evidence: point mutation Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="surface antigen BspA-like" /protein_id="EAY09409.1" /translation="MKCTNLKDFPIPSSLKTLSQWMFSECNNLLEVTIPTKFDTLPAA IFSDCKCLQKIHVHNNLYFMDAQCLYGCRLRKFVMPNSVESVSRDILSQNLYLEYLKI SDNILETPYNMAAGNIRCYHLELPSNLISVGSYSFPQIAAIELKFPPTTKLIGEGAFQ NCPNLGKVDLPKPLPTIEDRAFQGNKVCFKSTGGLTQDEIYVLKGRYSSGAFRSQCLD PDCYQDIHPIPKLLSDDYQVFQPDQLKDYPDYDPGPEGEVDTTTGGKSGTDKSGGNTG GNTGGNTGDGSGDNNQGNGSSEKGSLSTGAVAGIAVGAIVAVAVIVVVVILVIRFVRR PRTGDYELEMSE" gene complement(<60740..>62797) /locus_tag="TVAG_420320" mRNA complement(<60740..>62797) /locus_tag="TVAG_420320" /product="hypothetical protein" /note="transcript TVAG_420320A" CDS complement(60740..62797) /locus_tag="TVAG_420320" /note="encoded by transcript TVAG_420320A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09410.1" /translation="MRRGLPPQRQSIKKLPSTKTLPSVKKSLASTSSIPKSKYPISPP KTPGDSSVRVSKIKSTSKIAPPKPDIIIVNAINSIFKNEQTKTSFVHVFSATQQVDDN NTISKLFAHFREQILDKLDFLKIVTVEDLIDHYDLFNSQISKIQSFMKFLGRKNILDS RNNLPIWKFNEELAKHENKCFTIARELWLDHVHKRVLNDLSKEIKIIFQNLVKNNNSQ SESIVQRLYAIFKDLGLDYIQSVSDLFNMTYNIEHKDKSPSEKLQFLMYDLNRLSQVF PMEKLQELIFLNHIDDFLVPLLKNRDDVLLPMLPEFITPNLASEYSKKVVEYMESVSL PVDFFSLAEFLRYFSSIIPNSLPVRKYVGNYLNRTTTNFPSSLAFVFFAHIELTDNLK PLANLIPLYTNQDDISDEINKYLMKRLLQHRSSDITLERKLIETLKSVVGRDLVRTAS LILNNYKITDNMMIVCKPLWIRVIPDDSIKLPKEMEQSLNVLTQKYKSYYQKVQLSGI YSTVNVNCKYEKEEKTVIMSILQYNIIKLLESGITMVQDMGTTTEIVKKHMKPLIKAK FICKVPGGFSISKTPISGKKINVYEYTIKSKKSQVKKKEKKTEEKPPEDHLNGVRAAA IKIMKNENKLSRDSLKKSILQITSKLFETYDDEMNRAIKSLIFDQYLSVDKNDENILH YVP" gene <62941..>64425 /locus_tag="TVAG_420330" mRNA <62941..>64425 /locus_tag="TVAG_420330" /product="hypothetical protein" /note="transcript TVAG_420330A" CDS 62941..64425 /locus_tag="TVAG_420330" /note="encoded by transcript TVAG_420330A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09411.1" /translation="MDLYKNFELRTKNQSVVNLNHTEESEVEIDEKIQEEINNYHQNA QAYLESLKGNNTQVINNVVQLHNCILYKFSDFDTLIFAQNSILEAIMACSCDKELYYT FFIKYISINKENALETLKIGLIPFIIQSGELFNSPLYILQLIHEYCKYSSEVFMAVIF SSNIIFEIISNFKQIPDDNKGIYARIIATILTNSSIKPLLELNFKNKFSDEEASDFLI LENKPFNEDLFHYYQQHGIPVNSYDQSPICDFFIEYIYQQESLFALQHIIFKEAIECK YILFNPSFKEIFFDLDKLLSFPKEFHIDLVSVLDRIFYRMEIIPEQEYFTNIMRYLLS FIISNESDKKLFEKASNAIVNFLAATNYPQFIDDLFDESVIATICNLFNDSEFHKKKA AMFLFLIVASNYKLDIINEDSMESIIDFIDSDLNDTESLEFIVINLTSIFEANEEYIS LFQDLGGSEVIERLIEDKKVGERMSQFYNDYFDDTEIVLNLDED" gene complement(<64935..>66137) /locus_tag="TVAG_420340" mRNA complement(<64935..>66137) /locus_tag="TVAG_420340" /product="hypothetical protein" /note="transcript TVAG_420340A" CDS complement(64935..66137) /locus_tag="TVAG_420340" /note="encoded by transcript TVAG_420340A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09412.1" /translation="MYEKIDEFVGYVLSNDYKSLKKKEKSISIDATYYIQLPTYSQNR EPGTSLLHLAAFANSLECVIMLLKRGFDIFKTDTLGRTPLNLAALGASVEVMSFILRI YAKENKLEELFRQCYKLDNMETNLIISASNGGCVDIFRLFEIYGFKLYSFSKQSKTIC DICIERLAKNSHIEALKYVLDRIADDGISSNDKTPIMTAIINRNFEAAKVLIPHSDLN KVTKDNKTVLSYACFIGNAEMAKNLIPKIDFIDIPKDVKSKGAAHWICQLKDVGVARM VLERGIDVNRRDENNNPCVSDLIIRNSQADEESAFEILKMLIQYGFDIHATVPEKPSI LEIFVLNLSPQPQIIDYLLSLGADANKVCETYGMAVKKIETIKEKLKGKCRNPQIAKI YQKYFGQK" assembly_gap 68987..69086 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" mobile_element complement(69212..69634) /mobile_element_type="transposon:transposon-like, repeat family R107_ISTva1" mobile_element complement(69695..70186) /mobile_element_type="transposon:transposon-like, repeat family R107_ISTva1" assembly_gap 71764..71863 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 72870..72969 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 75627..75726 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(76871..>78261) /locus_tag="TVAG_420350" mRNA complement(76871..>78261) /locus_tag="TVAG_420350" /product="FYVE zinc finger family protein" /note="transcript TVAG_420350A" CDS complement(76942..78261) /locus_tag="TVAG_420350" /note="encoded by transcript TVAG_420350A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="FYVE zinc finger family protein" /protein_id="EAY09413.1" /translation="MSKNADLFKKRQNVVQEIIKTEHTYNMGLQMLNTLVTKKLLKSL DDKEFSLHYAELRKLFAKLIDVENFSRAFVEKLHTTIIANKNTKNIAEAFDGLKQLVD VYFEYIYAYHSNMPNIKTERTKNAAFSKLVEYFETNAKDTIEAFLITPVQRPPRYRLL LQELIKYTPKETQEYTDLNKYLQEIMQAIASVDDKIDVFDEYNKMCQLQSSVSDFDII GVKGRRMYFQGPATKFSRKYTNNRYLAIFNDGLLVLESYMVINWKPNKFYKTGEYLIM DVADSPPFVNAIDVRQKDKSFRCNLEDSKAKVEFLQGFEKMMKANNLTRADLEVRGFA PVWIPDDQAPVCMECQKKFTLFFRRHHCRRCGKCICSDCFKNQIRIPGISESPKHVCN ECYKELISRETELLEALTKRGPSQEQEKADDIDEDVPFVSALDQDSD" gene <79054..>79518 /locus_tag="TVAG_420360" mRNA <79054..>79518 /locus_tag="TVAG_420360" /product="PPIC-type PPIASE domain containing protein" /note="transcript TVAG_420360A" CDS 79054..79518 /locus_tag="TVAG_420360" /note="encoded by transcript TVAG_420360A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="PPIC-type PPIASE domain containing protein" /protein_id="EAY09414.1" /translation="MDLPPNWELRECKDYPGQVYYYNSVTNESTWIRPVPFPGDKNTA EWPPMVYVLHILIKHNQSEHPNPALKRTREEAQNIINEIHQILLTDNKKFESIAKDRS DCESAKFNGVLGWIARKKMPPEFEKVAWGLGIGQISKPFETVEGFHIVLRRG" gene complement(79737..80051) /locus_tag="TVAG_420370" mRNA complement(79737..80051) /locus_tag="TVAG_420370" /product="Dynein light chain 1, cytoplasmic, putative" /note="transcript TVAG_420370A" CDS complement(79767..80039) /locus_tag="TVAG_420370" /note="encoded by transcript TVAG_420370A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="Dynein light chain 1, cytoplasmic, putative" /protein_id="EAY09415.1" /translation="MSQDKRAVVKNVDMSDEMQQKAIDTAIQALDSFNIEKDIASYIK KEFDKTYNPTWHCVVGRSFGSFVTHETKHFIYFYIGQVAVQLWKCG" gene complement(<80387..>81253) /locus_tag="TVAG_420380" mRNA complement(<80387..>81253) /locus_tag="TVAG_420380" /product="hypothetical protein" /note="transcript TVAG_420380A" CDS complement(80387..81253) /locus_tag="TVAG_420380" /note="encoded by transcript TVAG_420380A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09416.1" /translation="MFIKYESERDFQFDGPRDVPGPGAYSPELKTTRLAPMIQGKYES KPPEPPLSGELKHTSWAPPKRPTSEFKSRSKRISAFDSDNAMTISPAPTSYQKTERST LNIKPKTIGNFGSRANRFHDLEEDGPGPGVYESKPVEWVSSQRTCRIHTKTRQPKRDM NTPGPGTYNIAPKWESRIDRPKSSFGSARRLEWTDRQDTPGPGSYYLDRSMQVHGIKM RGVRADYNSIFNIPTRDNPAPGTYHSPSTLSARGFTISRQERFRENVDDTPGPGSYDV TAGPFIKKTYHV" gene complement(81478..>83302) /locus_tag="TVAG_420390" mRNA complement(81478..>83302) /locus_tag="TVAG_420390" /product="phosphoenol pyruvate carboxykinase, putative" /note="transcript TVAG_420390A" CDS complement(81500..83302) /locus_tag="TVAG_420390" /note="encoded by transcript TVAG_420390A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="phosphoenol pyruvate carboxykinase, putative" /protein_id="EAY09417.1" /translation="MAQAFNKSKKVQAFVDEFVALCKPKDVMWIDGSQEQADMLFKQM VDSKMAIKLNQEKRPGCYLYHSDPRDVARVESRTFICSKNKEDAGPTNNWEDPEVMKK KLRGLYAGCMEGRTMYVIPFSMGPIGSSIGKNGIEISDSPYVVVSMRIMTRVSTKVLE CIGENGDFISCVHSVGYPLKDGRQDVAWPCDPENTYITHYPEEQTIWSYGSGYGGNAL LGKKCFALRIGSNLARKEGWLAEHMLILGVKNPEGKKTFVTAAFPSACGKTNFAMLIP PEELRKKGWEVTTVGDDIAWIKPNKDGELRAINPENGFFGVAPGTAMSTNPNALLSCA RNTIFTNVALTDDGDIWWEGMTEEKPKHLIDWQNKDWTPDCGRVSSHPNSRFAAPAAN CPCIDPEWENPAGVPVSIFVYGGRRMNDIPLVFQATSWAHGVYLGATVGSEQTAAAAD GKLGALRRDPFAMLPFCGYHMGDYFKHYLEMAKLAKTPLVFHVNWFRKSPAGKFLWPG FGQNARVLGWMVNRLYGKAPEHLSPLGYVPEYEDIDWEGLNFTKEQFEEVMHQDKEKI KAQVAANDDYLINKIGHVSQELLDVSQEILKRCQ" gene <84647..>84985 /locus_tag="TVAG_420400" mRNA <84647..>84985 /locus_tag="TVAG_420400" /product="hypothetical protein" /note="transcript TVAG_420400A" CDS 84647..84985 /locus_tag="TVAG_420400" /note="encoded by transcript TVAG_420400A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09418.1" /translation="MGEKQEKLELIDESEIQQASQSMLGDDARVEADIVSPELTEMER KKQKRITILCAIASVLIPLLGFVFFIYYWKKNKFRAWLCFGLAWIPTLAVIIFILWFF GVFLFWLGRT" gene <85894..86722 /locus_tag="TVAG_420410" mRNA <85894..86722 /locus_tag="TVAG_420410" /product="hypothetical protein" /note="transcript TVAG_420410A" CDS 85894..86679 /locus_tag="TVAG_420410" /note="encoded by transcript TVAG_420410A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09419.1" /translation="MCFNKEWSLGFTCTSLFFGGWVMSGKGIWKNLQPWQRWRICLCF IYFASMEALQFFQYLVINDCNSMANIILTALGYIHICWQPLFSNIALSALDFKNFEKK REEVWNFVFKFAFTSGLLMSARLLIPLIYDGPQNFIFTPCNHAEGICGEKTCTTNGLY HLKWEFKLLKSSYAFPNVAAHFLFMFVAPFLLGLRLQSIILFLTGPFISCLFRGEVSD GERSAIWCFFSIAESFITIITSLLACRYQLKDSTKNLKKSKKE" gene complement(87183..87783) /locus_tag="TVAG_420420" mRNA complement(87183..87783) /locus_tag="TVAG_420420" /product="DJ-1 family protein" /note="transcript TVAG_420420A" CDS complement(87207..87770) /locus_tag="TVAG_420420" /note="encoded by transcript TVAG_420420A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="DJ-1 family protein" /protein_id="EAY09420.1" /translation="MPKVLVLAATGFEPMELVNPTDLLRRAGADVKVAAVGTQGLQVD AAHGVKIVADVKFDAVKNETFDLIIAPGGMPGTKNLAANHDVVEFIKRHDKAGKLVGA ICAAPGFVLAQACGIMKGRKGCGYPGCDNAIAETGGELTTDAVTRDGNVITSRGPGTS QQFGLALIEALISKEKAHDVAKGAILA" gene complement(<88880..>89221) /locus_tag="TVAG_420430" mRNA complement(<88880..>89221) /locus_tag="TVAG_420430" /product="hypothetical protein" /note="transcript TVAG_420430A" CDS complement(88880..89221) /locus_tag="TVAG_420430" /note="encoded by transcript TVAG_420430A" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09421.1" /translation="MSAIVNLDFEYLGAHLNDYIQEGNFFDVFEVDDIERIMEYSKLT TNDFVTLLKQSESIINANELYQCTRNANVSICNAQDAILILQTVRKYMNLRIFDGIID ILNRMQNETRD" repeat_region 89517..89580 /rpt_type=tandem /rpt_unit_seq="taaa" /satellite="microsatellite" gene complement(<89576..>94345) /locus_tag="TVAG_420440" mRNA complement(<89576..>94345) /locus_tag="TVAG_420440" /product="hypothetical protein" /note="transcript TVAG_420440A" CDS complement(89576..94345) /locus_tag="TVAG_420440" /note="encoded by transcript TVAG_420440A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09422.1" /translation="MRREKLSKKSFNELLADLNDEIENKITSLGPSDCVNFPISYRSF PSLEEYDSKIEDFFKRFEYKSPYGETSFYYENVKQSFENYLDPLSHESLHNFVEKYCN MLEMKRKILHERINTPFILENHFLEFNNYEKKLMQEEMVTQTLLLKLSQKDSKLLENE KQFLKEIEQNYHLQFFPLESFYDVFLLFTLTRKKEIVSLAISRLDQDDEKYQNYNFPS FPTTSEEIVKRLKTLSSELGIDFDIELHDGHHFFYSCDKSFSDVFRSHIIAGSIDPPP SVIKNPSLQEIIQTITYDNMKSDMTIARKLADISSTNPDEISEILSDVRFEIRKKIDV QDEILACWQKLSYIRNRRLLYDIIEILHEINDLRHKIHRLEIPSRNAPSIPGFAVFRR QLIFNMTEARNINQNLDVDLILQECLLSEMKFLTSKKKLMEVLYEISLHTTSNDVLEV CDEIFSLRPDNSFFLEGTHKHFDRSYDLEASKCDLIANIFSILISMQKSHLKMNGKSE FNGIFSIMTELSILPMFFKAERGMKFEICNTMLMRAEKYKEYINYGIWRSLLNLIKSY QGDLFYPFDFLQTDFNIPGYEGCADTFEAQISYHAMQKEIMKTKVLLPYYNTQASQFS MQTLETLTKPSHREQHILNVRLEAAIRYNNYGMEGEFNKSFNKDYIFYYYLPSTNLFA SYEDDVILTSMRSDLAFLMTMEMIFLCQNGKQRSLKPGKFFNGEIIDPFAILSLDDCL SMKADEKIMKIALIKTRFLFLSRFLYSSTQRHEKVFEQIKSDNFSNQSSLIPQIVQEY QNEKKDVDTALIFLQDMENLELLKIILTILIPSIDQIEKPKVQVEKIIGRRPNTKNGS IEGPIRELFESIVTFPHYEKQFITMSRFIPLWIIQMMFCLGDNARTFFQEGSKNLDDL INDATINAKNKTNKEKIEYLSTLFNSQMLRLCYFEISSGLEEEDLDILTVFLNYKEQI FQKGQFFAEKLTKTTSLPKIEGDMTKIKENEFEIIKYKTFIKGVLREKQKNEVKSLFD KMTDDYQKSLNLGSPSFRPEIYSKAISQSDIKKSVYYLPDPSDLMHQFTLEKNYNICK LISKASDCATASKSSTNEINHEKLRNILLPLSQRIYDIFDKSMERFSQTWPSTLRSGL NIYESNMDDVLRSDCYLRKLSRDYDDQIKIKISDEMSEKFYLLNNLLATLKQTKSENK HFERQMTEDTQFYYNKVWNDLREEIENRKKNFGNVHDEFFSAALDTLTDLLTGEERVH QVVKEHKFKEKPSDPIKAVKEEIDSLKEEVVKMRIGNCIRQIGMKKVFEKKRDILVDD RRQYNSLLWGGKHRLDESLHLLQTELLEGEKKLSNFEMTIEDLQKEIKTIAHENAMLS HIREMLSLKTRDLNEDLEPLVDVDEDELCEILSKLEKANLELDEMKEEHDQYEEQVNI QVREPIAALDRMRRKLVTAKSQSVRADRLSSPPSPRQKSARQPSPRQGSPINSDYDDE DDEMTIVERQFLENKELKKENEDLKQKIEFIKTQLLPQPVAPPNSALGVPRLKIPKTA NDLYSRLNAPKTAKRSARSRKIVKPQAYPNTAKSARN" gene complement(<94806..>95357) /locus_tag="TVAG_420450" mRNA complement(<94806..>95357) /locus_tag="TVAG_420450" /product="hypothetical protein" /note="transcript TVAG_420450A" CDS complement(94806..95357) /locus_tag="TVAG_420450" /note="encoded by transcript TVAG_420450A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09423.1" /translation="MTDVEVCLACIKTLAVISGRTVNACPTELLPPLEVSMKRKVIRN IKAFVAETQLTNISSSVLGLYNGMKLDNKLKKFVGDCAFMDCVKQDSDVAMEHRVKLW RRIKQKYPNLDLPESLPDRNINHLMSANINKVRIRSSTNLLALPADSRDELSSVEAFA GCFALPLVVGGDNLVLLINEFEK" gene complement(<95426..>97066) /locus_tag="TVAG_420460" mRNA complement(<95426..>97066) /locus_tag="TVAG_420460" /product="hypothetical protein" /note="transcript TVAG_420460A" CDS complement(95426..97066) /locus_tag="TVAG_420460" /note="encoded by transcript TVAG_420460A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09424.1" /translation="MIFEFLKLMFSYSSLRVFRLWKLTACNRKIHRAELKFIRFTAKK SAKLSPVYRIFIVWFRYVKWKKTSRKTHFEDNTYIHLEVQEKIPKWSILERRLNQKQR TLIMIQAYLKKKLKTKVVKTLYNRSIEKHTEQLAIMDADEFRNNQLSKICCRAWLKYL EIQQRQKQTIKECMSGWYEAAYNDARKKIQINFFKKREIEFFLHKILTKWNRMSTLYK IESVYRCLGVQRDPSLGHLFCFCFFNFEVAFQIMCWRSWLKYIRRRRAWKRFCQSVQD TDQQNEKSQIIMSELKRIARAHAAGLSTTNHELLPRGLGISPELQLLNINQINSDIEE ERLSQTFIPYDKNVEKTGDALVRSLLVVISNKQNLDVFKKKVNTVDHFERFRTLQDLQ EQILVNSKIFHDNIRIKLFKDKSIIASINAHKESLKYSQEFDFLTAKSEPLTTEPFPV FDVNDGKIFVFWEYEISIKNIIRQHQMAPPRLLNSFGNEMKAAFRAFDRRLRSPYEIK LQQKKSDNLTNIFSGFAKNMTDTAKLINNIKTNSHQNP" gene complement(<97915..>99993) /locus_tag="TVAG_420470" mRNA complement(<97915..>99993) /locus_tag="TVAG_420470" /product="hypothetical protein" /note="transcript TVAG_420470A" CDS complement(97915..99993) /locus_tag="TVAG_420470" /note="encoded by transcript TVAG_420470A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09425.1" /translation="MDTDEFSSSFEELTAKIQEDISTLAMSIENRDLNIDEITQSIND LNIMLDNVLVSCDNPNLYSQFANLKEQINEMVDNYISELENEVNEEESQLGEVPEDGL ITDNDQNANNTELNKSNDQNEDLENDLPPGNQNEPNSAEDSMLKIQCHMIELAKLIEN KETPIEEILEKSNILNSEIGEAIIQSYDQNEKDKLSYLRNEVNDYVDKFITTTSEILE HPTSSESDTEKNTLNENNEEKIISENQIKVEENKLDSIDDGYDNVKSNIESLIRSLIS ECDIEDIKNQCDSVNSAIDDYINKSDDTNRCMELANLKEEINRQVDSYVTAYESALSS EAQSDGVELSTALSDEERVEPAEGSSSVVSRDLDLSGVEGSSLESDIQSLLAALEEGD SDRVEEISNLAASVNASLDNAIVNSEDPSEAASLSAVKDDVNKRVDEFLSSVERDLSG IAVEEEEEASPAEGESALVEDVAVAEKAAEEAAAKLAEAAAAKESEEKAAEEKRLAEE QAAKEAEAQRAADEKAAAEKAAEEKRLAEEQAAKEAEAQRAADEKAAAEKAAEEKRLA EEQAAKEAEAQRAADEKAAAEKAAEEKRLAEEQAAKEAEPQMISEISQQIHDKITQDA VQENLPSTIETDKESKKPHKTTKRKRKVSKTKKSEEPIPQRTQILMASTALAGVVAAG IYLYRHNQKK" gene 101134..102016 /locus_tag="TVAG_420480" mRNA 101134..102016 /locus_tag="TVAG_420480" /product="hypothetical protein" /note="transcript TVAG_420480A" CDS 101143..102012 /locus_tag="TVAG_420480" /note="encoded by transcript TVAG_420480A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09426.1" /translation="MGNILSCFKGNQIVTLLARVLMSKLGMNFSLDEWNNARLEGDVQ THLENAKTLGTDLSKASKSSISNLDKAVFICINTYVSEQITLGVGPMNDGINVAEAMA AKKWPIFFLHNPTQAQYLEWLDVFLANTKSELITYYTGHGTQVDGGDGQENDSKNEAY VFENGSQVECTPDDTLQKHLVQYKTNANLKVILLSDCCHSGTIWDLNKSDSPQNCISI SAAQDKQTAKQTQVESKEQGIFTYYLMKFLEQNPTATPNWLGEQMLPYLTKFQQNFTV QTSTQSLLDSSLL" gene complement(<102260..>103015) /locus_tag="TVAG_420490" mRNA complement(<102260..>103015) /locus_tag="TVAG_420490" /product="hypothetical protein" /note="transcript TVAG_420490A" CDS complement(102260..103015) /locus_tag="TVAG_420490" /note="encoded by transcript TVAG_420490A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09427.1" /translation="MLEQIAPVQATFSNDVNDIFHDRRLSDLLPADFIRQIGFDPDQY IFQTTPQSRMRRRRTEPTLTLFDPAPVPSRRRSEVTDIMYGQMNMAQGQSLIAQLPQM PPGTKFYCYEVRLSDFIIHAYSFQQLNWEKGSGVFIRDGRYIRYGQITKNLQIKDTDP NALQIVGQDIKGAVGDFIYGVNQIAQKIVPNLILQSGSKVKFISVEIVSYQARSLIRV KVTNADDPYLLYVMQKLIYIFGPPVEVYDDLSA" gene <105098..>105457 /locus_tag="TVAG_420500" mRNA <105098..>105457 /locus_tag="TVAG_420500" /product="Carbamate kinase, putative" /note="transcript TVAG_420500A" CDS 105098..105457 /locus_tag="TVAG_420500" /note="encoded by transcript TVAG_420500A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="Carbamate kinase, putative" /protein_id="EAY09428.1" /translation="MRIVVALGGNALLQRGMKGTFQDQQAACRLAMSQIVKIVKDGNE LVMTHGNGPQCGAIFLQNVAGEKEKVPAMPLHVCGAETQGFLGKLLQQELDGALRAEG IDKKVVSIVTQSFVDPK" gene <107984..>108481 /locus_tag="TVAG_420510" mRNA <107984..>108481 /locus_tag="TVAG_420510" /product="Carbamate kinase, putative" /note="transcript TVAG_420510A" CDS 107984..108481 /locus_tag="TVAG_420510" /note="encoded by transcript TVAG_420510A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="Carbamate kinase, putative" /protein_id="EAY09429.1" /translation="MVEDAGRGYRMIVPSPVPQKFVEEEAIKALVNTGFIVVCSGGGG IPVMLDEKENRIKGVDAVIDKDLGASVLAAATNADAFMILTDVPKALLNYRKENETAI RQATVAEMEKYIEEGHFIKGSMLPKVQACLRFVKSTGKPAVITALDCALQALKGERGT KIVPN" gene <110644..>112557 /locus_tag="TVAG_420520" mRNA <110644..>112557 /locus_tag="TVAG_420520" /product="hypothetical protein" /note="transcript TVAG_420520A" CDS 110644..112557 /locus_tag="TVAG_420520" /note="encoded by transcript TVAG_420520A" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09430.1" /translation="MPRKLRKNIRKRKGALKHPIVKLTPQQQLQQQMMNDPTMLQQMS SNPMLLNRVIGAQSGGLRAALLAKMAGYGGAADGTAYNPQSQMNLSSLKNQITDVKKS NIDIQKQISENEKKLEYDRHTKKLNELNVEKKKKEEQLKELSTEEYAKKVSEKAAEVA KMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGTYVPAGGTYIPAGGTYIL ASGTYIPPNPPREARAPGLPKTFTSSHGHRHRHAPKQQQQPTVQNPAPQPTVQNTTQQ PTVQNPAPQPTVQNTTQQPTVQNPAQQQPQTEQGHKRSREQGNQEFLKMLKEDYGYPD TLDFSDRYKEAIKKFKEGNTDPNLFSFMVQHQMGYNFKPGKYKLAKGYDLIAYHPNDM DEFTPRYLMSELNDNSTLFMKRVKNRDGTKEERFMSPDDLDRELFKNGLGIYEMPADE VQETQQEEVQIQPDMEEIVQQQQLEEPEGNEQVPHLETNFTELDEDLEQPKNLDPQQV YAENMESFQESKKNSADIVEEYRKMFADIQKTPTSDENIQHRMEVLKENVRKYNNPFY LRPYNVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHILYRYLVQTVRRLFE SEYDKLRKHLWQV" assembly_gap 111134..111233 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" repeat_region 111401..111561 /locus_tag="TVAG_420520" /rpt_type=tandem /rpt_unit_seq="cacaa" /satellite="microsatellite" assembly_gap 112368..112467 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <112574..>113158 /locus_tag="TVAG_420530" mRNA <112574..>113158 /locus_tag="TVAG_420530" /product="hypothetical protein" /note="transcript TVAG_420530A" CDS 112574..113158 /locus_tag="TVAG_420530" /note="encoded by transcript TVAG_420530A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09431.1" /translation="MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVC ENVANFIMVSNNAVPMKLESSDRRYVVVRTSDSHMQDTEYFDDLAETLTSDFYNHLFS YFMTLDISKFNPRQIPHTEERQTLLEANKSVYELFIDETDFECLDERSLYDSYKQYCQ EYGYMTASKRTFLANVKSLLDVQNGVYTKKNFSE" repeat_region 113195..113608 /note="repeat family R371" assembly_gap 113466..113565 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <113648..>114625 /locus_tag="TVAG_420540" mRNA <113648..>114625 /locus_tag="TVAG_420540" /product="hypothetical protein" /note="transcript TVAG_420540A" CDS 113648..114625 /locus_tag="TVAG_420540" /note="encoded by transcript TVAG_420540A; Identical to: GlimmerHMM gene prediction Covered by: TigrScan gene prediction" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09432.1" /translation="MVDRCFAVEKLVSNIDSEIARHFLKDKNFNFSKNMLEKKFADID KKFENVLNKNKRKLENAQIKPIHDKFLFAQNGITGLIAPPGSGKTFTYLKMAAQQQEL DEKNPFYELVVICSTSGQFDQTVNSFKDIIKKSKLVCIKDTELLDWIKKYQRRVLKYN AINEYINSKFKDPNEEMQRILEKKHFRNKQKEIEYISKKLQSYDWKTYPHRCLLILDD FASHPLLKNREQDMCRILKKLRHFHISVVICVQTAKSLSKDVKRILTDIILFPGLSED DFMELMKESMAGKFDRHELWEKYKVIQDPHTSFRIHIYANKVQIVKSQA" gene complement(<114642..>115448) /locus_tag="TVAG_420550" mRNA complement(<114642..>115448) /locus_tag="TVAG_420550" /product="hypothetical protein" /note="transcript TVAG_420550A" CDS complement(114642..115448) /locus_tag="TVAG_420550" /note="encoded by transcript TVAG_420550A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09433.1" /translation="MSTTENTTTVIVHEAINEEYEYIQYNKQLRLIRSVKDDMYQMQS ILNALRSTKQAYHWFENQQTKELLEEFPHMIASLGKPREEIPYENREKLPNGLRGYYV HRLLVNAVAMWASARYAWNIYRLLDEIHRQEREEMENKLEAKDKSIQKRIPRSVPKGK EKNYKYMIYTEEMENEEDRDMVMLHLVRRNTKSFYDLAKIYKSDRNWFYRENLPISMT PNEDVKQIVQDTLPQTHYDMKGCTILTFKEDLPLLKEKITEYFDNFKQVG" assembly_gap 115605..115704 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" repeat_region 117646..118449 /note="repeat family R321a" gene <118604..>118966 /locus_tag="TVAG_420560" mRNA <118604..>118966 /locus_tag="TVAG_420560" /product="hypothetical protein" /note="transcript TVAG_420560A" CDS 118604..118966 /locus_tag="TVAG_420560" /note="encoded by transcript TVAG_420560A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09434.1" /translation="MDAQNLANAQQPGQPNPENIPNEVRIQTAMANYGQVPTDVQMQT AMSNDAALGLPPWYANMRWKEFYTNPEVGYKQLYADDANTGVDPEYVFYQRRNRMYEL QLKNAMELNRKRKRLGGH" gene <118985..>119227 /locus_tag="TVAG_420570" mRNA <118985..>119227 /locus_tag="TVAG_420570" /product="hypothetical protein" /note="transcript TVAG_420570A" CDS 118985..119227 /locus_tag="TVAG_420570" /note="encoded by transcript TVAG_420570A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09435.1" /translation="MGFFSKIGNFFRNVGRGIWNGIKSVGRGIWNGVKNIGKRVGQFV GIIPKDPEPEEQAPVIQQPEPAPQSSWQPNPTPQPY" gene complement(<119303..>120079) /locus_tag="TVAG_420580" mRNA complement(<119303..>120079) /locus_tag="TVAG_420580" /product="hypothetical protein" /note="transcript TVAG_420580A" CDS complement(119303..120079) /locus_tag="TVAG_420580" /note="encoded by transcript TVAG_420580A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09436.1" /translation="MLSIEKENSRVATTKPLDELFTNVGQKFETETVKHEGYRFDYPL RWLRDPSVTKAIGFRRMKFISEAIHGFPFTVGFEVRYYNKEKRMYEKFEQGKLLQVSL LVNLETTLQAFQEKINDIYIEYANQYNIDEGEYHLDIIYDRKNATVKINRIEDLGENV YISTKYNNLAWYRFMRMLNQPAAYPVHPDFYEVENPNGTYENVFDPAAIIVHASFSGA QNSFLCLANDFYEKPTKLYEPPSGSISDFKYGLQQMEERE" assembly_gap 120895..120994 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" repeat_region 121154..121378 /note="repeat family R31b" repeat_region 121677..123830 /note="repeat family R31b" repeat_region 123887..124747 /note="repeat family R321a" gene <125114..>126028 /locus_tag="TVAG_420590" mRNA <125114..>126028 /locus_tag="TVAG_420590" /product="hypothetical protein" /note="transcript TVAG_420590A" CDS 125114..126028 /locus_tag="TVAG_420590" /note="encoded by transcript TVAG_420590A; Identical to: TigrScan, GlimmerHMM gene predictions" /codon_start=1 /product="hypothetical protein" /protein_id="EAY09437.1" /translation="MLATTAPNSLVMNPTSMLVEMKSFIPSSYTFETEIQKIKQELLQ GDLDCTAKDETNEEYLYEMQDIIDHLPKLPEIQQQKLTIPEFDEIEVKATDSVETKKF IRKVNYEFLGFHCNHKVMDKDCDMLYKNISDIYKSEEFKTYDNFVSLVAKCVWQIRDK DRRGKVWNQQIKPATFELKKTIDALVVLAGKVSEYNAKMNPQCSKCKAAMRKYNYSVK EIERMRNDYADLKKEAEKPAEDKMDMLTFLNKNYPTADDFLLSDVKKKYKETFGIVKT FDILSEEIEATKLFRISNIHRTIHVRRL" CONTIG join(complement(AAHC03013363.1:1..1776),gap(unk100), AAHC03012107.1:1..1896,gap(unk100),AAHC03002256.1:1..12872, gap(unk100),AAHC03006123.1:1..3966,gap(unk100), AAHC03000605.1:1..35014,gap(unk100),AAHC03002241.1:1..12962, gap(unk100),AAHC03008722.1:1..2677,gap(unk100), complement(AAHC03048050.1:1..1006),gap(unk100), AAHC03008799.1:1..2657,gap(unk100),AAHC03000590.1:1..35407, gap(unk100),AAHC03032714.1:1..1134,gap(unk100), AAHC03049586.1:1..998,gap(unk100), complement(AAHC03011119.1:1..2039),gap(unk100), AAHC03004713.1:1..5190,gap(unk100),AAHC03004845.1:1..5071) //