LOCUS       DS028411               68460 bp    DNA     linear   CON 27-OCT-2009
DEFINITION  Phytophthora infestans T30-4 supercont1.294 genomic scaffold, whole
            genome shotgun sequence.
ACCESSION   DS028411 AATU01000000
VERSION     DS028411.1
DBLINK      BioProject: PRJNA17665
            BioSample: SAMN02953670
KEYWORDS    WGS.
SOURCE      Phytophthora infestans T30-4
  ORGANISM  Phytophthora infestans T30-4
            Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporomycetes;
            Peronosporales; Peronosporaceae; Phytophthora.
REFERENCE   1  (bases 1 to 68460)
  AUTHORS   Nusbaum,C., Haas,B., Kamoun,S., Fry,W., Judelson,H., Ristaino,J.,
            Govers,F., Whisson,S., Birch,P., Birren,B., Lander,E., Galagan,J.,
            Zody,M., Devon,K., O'Neil,K., Zembek,L., Anderson,S., Jaffe,D.,
            Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Mauceli,E.,
            Brockman,W., Young,S., LaButti,K., Sykes,S., DeCaprio,D.,
            Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M.,
            Howarth,C., Larson,L., White,J., O'Leary,S., Kodira,C., Zeng,Q.,
            Yandava,C. and Alvarado,L.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     Annotation of Phytophthora infestans T30-4
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 68460)
  AUTHORS   Nusbaum,C., Kamoun,S., Fry,W., Judelson,H., Ristaino,J., Govers,F.,
            Whisson,S., Birch,P., Birren,B., Lander,E., Galagan,J., Zody,M.,
            Devon,K., O'Neil,K., Zembek,L., Anderson,S., Jaffe,D., Butler,J.,
            Alvarez,P., Gnerre,S., Grabherr,M., Mauceli,E., Brockman,W.,
            Young,S., LaButti,K., Sykes,S., DeCaprio,D., Crawford,M.,
            Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C.,
            Larson,L., White,J., O'Leary,S., Kodira,C., Zeng,Q., Yandava,C. and
            Alvarado,L.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2006) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     Annotation was added to the scaffolds in October 2009.
FEATURES             Location/Qualifiers
     source          1..68460
                     /organism="Phytophthora infestans T30-4"
                     /mol_type="genomic DNA"
                     /strain="T30-4"
                     /type_material="culture from epitype of Botrytis
                     infestans"
                     /db_xref="taxon:403677"
     gap             5916..7759
                     /estimated_length=1844
     gap             11394..29465
                     /estimated_length=18072
     gene            <30662..>32552
                     /locus_tag="PITG_21409"
     mRNA            join(<30662..30810,31154..31172,31804..32163,
                     32232..>32552)
                     /locus_tag="PITG_21409"
                     /product="hypothetical protein"
     CDS             join(30662..30810,31154..31172,31804..32163,32232..32552)
                     /locus_tag="PITG_21409"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EEY60721.1"
                     /translation="MARTGTSTTGTTSGTTKKCSRSGQVGGGSLMVWARMSHYGKTEI
                     AFLEGRYANANGTELEAKVQRENTQPRRSLSVVIPETSNGRAPPVNLVKPVGHRLLPR
                     GLPPSSGLAVPVERVPVLQHLQRHPVNPQSRGQGIPANPLSNSSRQQLQANRRSNRLQ
                     AVPVNLHNNNRPLLQACENIVIKDLSVPASTTLDLTKVAKGATITFEGTSTFEYAEWE
                     GPLVLLTGIELTVMCPVPGNGGVIPGALPPVGMTRDPGNHSSPRRPVRMVPVEPNNAR
                     APDRAR"
     gap             33230..35325
                     /estimated_length=2096
     gap             37331..37590
                     /estimated_length=260
     gap             41700..41799
                     /estimated_length=unknown
     gap             45953..46560
                     /estimated_length=608
     gap             49807..49906
                     /estimated_length=unknown
     gap             55948..56047
                     /estimated_length=unknown
     gap             58869..58968
                     /estimated_length=unknown
     gene            complement(<59499..>59957)
                     /locus_tag="PITG_21410"
     mRNA            complement(59499..59957)
                     /locus_tag="PITG_21410"
                     /product="elicitin-like protein INF4"
     CDS             complement(59555..59911)
                     /locus_tag="PITG_21410"
                     /codon_start=1
                     /product="elicitin-like protein INF4"
                     /protein_id="EEY60722.1"
                     /translation="MNFVALIAVTVAVLVGSTNAAACTAKQQTAAYNTLVSLLSEASF
                     STCSKDSGYSMITSKTLPRPKEKKAMCKSSSCKSMIKKIIALNPPNCTLTVPTSGLKT
                     NVYKMAHDFSSDCKRL"
     gap             60575..61479
                     /estimated_length=905
     gap             65372..65611
                     /estimated_length=240
CONTIG      join(AATU01011733.1:1..5915,gap(1844),AATU01011734.1:1..3634,
            gap(18072),AATU01011735.1:1..3764,gap(2096),AATU01011736.1:1..2005,
            gap(260),AATU01011737.1:1..4109,gap(unk100),AATU01011738.1:1..4153,
            gap(608),AATU01011739.1:1..3246,gap(unk100),AATU01011740.1:1..6041,
            gap(unk100),AATU01011741.1:1..2821,gap(unk100),
            AATU01011742.1:1..1606,gap(905),AATU01011743.1:1..3892,gap(240),
            AATU01011744.1:1..2849)
//