LOCUS       DS028251              340244 bp    DNA     linear   CON 14-JUL-2016
DEFINITION  Phytophthora infestans T30-4 supercont1.134 genomic scaffold, whole
            genome shotgun sequence.
ACCESSION   DS028251 AATU01000000
VERSION     DS028251.1
DBLINK      BioProject: PRJNA17665
            BioSample: SAMN02953670
KEYWORDS    WGS.
SOURCE      Phytophthora infestans T30-4
  ORGANISM  Phytophthora infestans T30-4
            Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales;
            Peronosporaceae; Phytophthora.
REFERENCE   1  (bases 1 to 340244)
  AUTHORS   Nusbaum,C., Haas,B., Kamoun,S., Fry,W., Judelson,H., Ristaino,J.,
            Govers,F., Whisson,S., Birch,P., Birren,B., Lander,E., Galagan,J.,
            Zody,M., Devon,K., O'Neil,K., Zembek,L., Anderson,S., Jaffe,D.,
            Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Mauceli,E.,
            Brockman,W., Young,S., LaButti,K., Sykes,S., DeCaprio,D.,
            Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M.,
            Howarth,C., Larson,L., White,J., O'Leary,S., Kodira,C., Zeng,Q.,
            Yandava,C. and Alvarado,L.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     Annotation of Phytophthora infestans T30-4
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 340244)
  AUTHORS   Nusbaum,C., Kamoun,S., Fry,W., Judelson,H., Ristaino,J., Govers,F.,
            Whisson,S., Birch,P., Birren,B., Lander,E., Galagan,J., Zody,M.,
            Devon,K., O'Neil,K., Zembek,L., Anderson,S., Jaffe,D., Butler,J.,
            Alvarez,P., Gnerre,S., Grabherr,M., Mauceli,E., Brockman,W.,
            Young,S., LaButti,K., Sykes,S., DeCaprio,D., Crawford,M.,
            Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C.,
            Larson,L., White,J., O'Leary,S., Kodira,C., Zeng,Q., Yandava,C. and
            Alvarado,L.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2006) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     Annotation was added to the scaffolds in October 2009.
FEATURES             Location/Qualifiers
     source          1..340244
                     /organism="Phytophthora infestans T30-4"
                     /mol_type="genomic DNA"
                     /strain="T30-4"
                     /type_material="culture from epitype of Botrytis
                     infestans"
                     /db_xref="taxon:403677"
     gap             7436..37479
                     /estimated_length=30044
     gene            complement(<37550..>38194)
                     /locus_tag="PITG_19725"
     mRNA            complement(join(<37550..37802,37881..38011,38129..>38194))
                     /locus_tag="PITG_19725"
                     /product="conserved hypothetical protein"
     CDS             complement(join(37550..37802,37881..38011,38129..38194))
                     /locus_tag="PITG_19725"
                     /codon_start=1
                     /product="conserved hypothetical protein"
                     /protein_id="EEY54637.1"
                     /translation="MARTGRPRKTGGSGAKPKQYKREYAWKKLRAVIKAKVAGGSRYH
                     QRNRTLGMSATLSAEVEKQLVGTRGSRSGPFKASWSWRKHFLRRHKLSIRRRTREGQC
                     TPADAEQKVEELSNQVRLKMDELGVSVVYNADQTGMYQIFTTCETWK"
     gap             38354..39741
                     /estimated_length=1388
     gap             45483..46784
                     /estimated_length=1302
     gap             62944..63284
                     /estimated_length=341
     gap             65415..68342
                     /estimated_length=2928
     gap             69330..87187
                     /estimated_length=17858
     gap             87889..90340
                     /estimated_length=2452
     gap             111613..125328
                     /estimated_length=13716
     gap             128052..128151
                     /estimated_length=unknown
     gene            complement(<130635..>135359)
                     /locus_tag="PITG_19728"
     mRNA            complement(join(130635..132366,132667..133123,
                     133445..134056,134266..134339,134398..134663,
                     134740..134843,134928..135199,135298..>135359))
                     /locus_tag="PITG_19728"
                     /product="cohesin subunit, putative"
     CDS             complement(join(130689..132366,132667..133123,
                     133445..134056,134266..134339,134398..134663,
                     134740..134843,134928..135199,135298..135359))
                     /locus_tag="PITG_19728"
                     /codon_start=1
                     /product="cohesin subunit, putative"
                     /protein_id="EEY54638.1"
                     /translation="MDVEAEEQDVLVANELCEERSGDDGREGDDEEFTPGGTKVKTPK
                     KSASKAARTPTANVRSGRRKRSPWSQTRSLQSNGKGRKSKRNGATKMDETPEAGIDNE
                     QEHGVSSLFDAIKNGKVSLENLLSEWRDRFEEDDENASREVLNLACGGTGQCVPESEP
                     LAQLNMADLVNHVEKGLEKANGEYPLMSRGKGKKKFQRNFDEFWEFFVKECYESEILF
                     TSEIANNFIDWLSTLSRSMQFRALTNSTYDDSCCTGIEKFLRVVVHRYRDVMPEIRVA
                     TMQCLGHWITTLPDQFFKDSFLKYLGWLLSDRSAAVRFEVVEILCELYENDAFTEKLE
                     LFTAKFLSRYLELCSDVDDGVFEEAIHLLIAVDKHSLISSDIELQPVEKLVFDAEHED
                     IRKAAAEFVCIQYDAFGVAVSKTKNATLKKEQLNTQAIALVEFAEEYIQNYGVPEDAV
                     ETLVDAFWGLEDCRRKITVAYCKDIPSLFLLYQADSDKLALLLELIPMLTLRSEVIGH
                     HSSQMKELLEKLKHAYLLHSNEELLTSLSLSITHLLKTEHASLKREAEALMQELVQEI
                     MDITDRLLEADIKLFDDSAIASDDTPKARSKKAKGRKKKGAKTKESSDVDIEEYAKQN
                     ISSNAASEYTEAVDPAVQSQIQKVCQSRSTLEEALSSVLEMHLARTKEVMDEEHKDSE
                     DMQDIQSVESMEEIVFEDEDVVSYVKEAQRFAFLTFCDIRCLFVEKFQDATPPYDALE
                     WTLPNVLRHLTQMHFESEMDDAEDEEPEFEDDVVKNDPEVAKEKANAFREWQEKQQRR
                     AELLVALGRVALCNPNKKYQAAAVLQCFTSSGKSSVEVVKAFGKQVKTDAPVRYLEIQ
                     MAALRQLYSSILIGKQDIEAAQTSEEKNDDDIAEQEAVKEKVESSELELKELAKRFSQ
                     FLGVDKVPLSLRAPFLRFLREGVRYALEQPAQFEFLEAMRVYVSRLDNTSMAQLREYF
                     MERRKTLHDVPGDSEDLDSRWRALFDFQTAITSTVAAGKMNSTGAMLSPPLRNKRRFA
                     SSEPTPMQGTSIAEEDEGENVEREDNAGEKTESAAGDQTEANKAGHEEQIDHNNRHTS
                     SGHKRFAVADEGFDVAESLLPRKRMRRSGNANEAEASGDEANDLDHQLQSESKSEEEE
                     PPQSDYEVQPAAGDKEDDKRTHRNRRRA"
     gene            <135616..>136963
                     /locus_tag="PITG_19729"
     mRNA            join(<135616..136272,136614..136719,136830..>136963)
                     /locus_tag="PITG_19729"
                     /product="glycoside hydrolase, putative"
     CDS             join(135616..136272,136614..136719,136830..136963)
                     /locus_tag="PITG_19729"
                     /codon_start=1
                     /product="glycoside hydrolase, putative"
                     /protein_id="EEY54639.1"
                     /translation="MWHLSWLPLFLGGCAASYNVCDDTKVASLPFCDSLLPLNTRVDD
                     LGTRIPLDQAVGLLVHGVALAPGVTFKGPITAATSFPQVLSTAASFNRSLFYQIADVI
                     STEARAFNNAKDAGLTFWTPNVNIFRDPRWGRGQETPGEDPYLTGEYAVAFVRGLQGE
                     GMEGREVENTKFLKISSCCKHFSAYSQEVPRHRNNAMVTKQDQADTYFPAFEDCVKRG
                     HAQPFANITKDSVDTTTHRQLALEAARQSIVLLKNDELNSRSTNRGFGRLSEAEGEGL
                     RRLLARLPTAASPAEPITSEAT"
     gene            <138053..>139324
                     /locus_tag="PITG_19730"
     mRNA            join(<138053..138274,138319..138368,138410..138534,
                     138609..138888,138968..139324)
                     /locus_tag="PITG_19730"
                     /product="2-acylglycerol O-acyltransferase, putative"
     CDS             join(138053..138274,138319..138368,138410..138534,
                     138609..138888,138968..139253)
                     /locus_tag="PITG_19730"
                     /codon_start=1
                     /product="2-acylglycerol O-acyltransferase, putative"
                     /protein_id="EEY54640.1"
                     /translation="MEQDNGVTSPSTTQRGGAPLAYETPGFFSEDSRVPQWAQNLATD
                     LFSFVTIHYNVWGVPFVVLFYYLYSFGYGYWCPEDGRRKPLASLPLHHELDSNKKYIF
                     GFHPHGIIVLSRVSTYGGNWEKVFPGIPTRALGASTMFYVPLGRELCLWLGGVDASRS
                     TADKVLNDGTSIVVYPGGVPEIFKTDPNSKVNELVLKKRLGFVKLAMRHGAELVPSFV
                     FGEKWLYNMWNPPQGVIDFFRKTLRIPMIVFWGKFMWMPKQPPKGKRFGVVYGKPIPT
                     KLTANPSEEEIRAVHTQYVAEIQRLFSEYKKDFGYDDDETLLIN"
     gene            <171198..>171780
                     /locus_tag="PITG_19734"
     mRNA            join(<171198..171203,171391..>171780)
                     /locus_tag="PITG_19734"
                     /product="conserved hypothetical protein"
     CDS             join(171198..171203,171391..171780)
                     /locus_tag="PITG_19734"
                     /codon_start=1
                     /product="conserved hypothetical protein"
                     /protein_id="EEY54641.1"
                     /translation="MIVRRTPLSSNKPDLIIIDAYSNDNLRRKNLFSHYMTRGRHFKL
                     STIFLSHSYCATDKMLRLNSKYVTIQNANSKRDSAMVVKEFNIPGVDERLIVHYYIRA
                     TERKGQILLCDSVREQLRYNFDRPTRTEE"
     gene            <178737..>180086
                     /locus_tag="PITG_19735"
     mRNA            join(<178737..178775,179292..179575,179656..179863,
                     179931..>180086)
                     /locus_tag="PITG_19735"
                     /product="conserved hypothetical protein"
     CDS             join(178737..178775,179292..179575,179656..179863,
                     179931..180086)
                     /locus_tag="PITG_19735"
                     /codon_start=1
                     /product="conserved hypothetical protein"
                     /protein_id="EEY54642.1"
                     /translation="MAKDKKKRRRNDKAEVHFDVDATHLEKESWLDGAQPLQSIVFNF
                     PHLGGATEEDVANNQKLLRDFFYSTRRYLHPTHGQALVSLRNTLFYNRWKIQEQAAAS
                     GFKLKRTEVFDASIYSGYEPQRTHPASFRGEPPSTTGAHYFIFALDKSVQVVDPRQRV
                     PQDLKANELVCGSAVKKQQEQAKKKTTPPTKMSCQPCGLTFRDVKKYNGHMNSAKHAK
                     KVKALKKKKH"
     gene            complement(<180150..>181165)
                     /locus_tag="PITG_19736"
     mRNA            complement(join(<180150..180371,180440..>181165))
                     /locus_tag="PITG_19736"
                     /product="alcohol dehydrogenase, putative"
     CDS             complement(join(180150..180371,180440..181165))
                     /locus_tag="PITG_19736"
                     /codon_start=1
                     /product="alcohol dehydrogenase, putative"
                     /protein_id="EEY54643.1"
                     /translation="MSSYRAVQVVKLTKDFRAATRIVSVPELPTAGPDSIVVKNRFLG
                     INSTDVNLTNGMYHDKLPFLAGVEGAGLVTEVGSNVTTVKVGDAVMYQTLGAYADYVQ
                     VPVSAAIKIPELSKNALPVAVGGVSASICLECLGEMKSNETVLVTAAAGGTGQFVVQL
                     AKLAGNHVIGTTSSDEKVEALTKLGCDRVINYNKENVGDVLKKEYPNGVDIVFESIGG
                     DMFRAAVDNIAVRGRIIKIGFISRKILMKSASIRGLFMYHFEEHIREHTERLLKLISE
                     GTLKPGVDPTTYKKFESIPNAIDRMFARENVGKLIVELE"
     gene            complement(<181680..>183185)
                     /locus_tag="PITG_19737"
     mRNA            complement(join(<181680..181755,181814..181882,
                     181961..181997,182063..182108,182186..182272,
                     182353..182549,182615..182676,182748..182832,
                     182903..183185))
                     /locus_tag="PITG_19737"
                     /product="3-mercaptopyruvate sulfurtransferase, putative"
     CDS             complement(join(181680..181755,181814..181882,
                     181961..181997,182063..182108,182186..182272,
                     182353..182549,182615..182676,182748..182832,
                     182903..183119))
                     /locus_tag="PITG_19737"
                     /codon_start=1
                     /product="3-mercaptopyruvate sulfurtransferase, putative"
                     /protein_id="EEY54644.1"
                     /translation="MSSLSPLLSTEQAQSLSQNGERRVRFLDASWYLDKSRNAKQEFV
                     SERLPGAQFFDIEQISDTKSTLPHMLPKPETFEDAMMYLGVENDDTVIVYGGKHCFSP
                     ARCWWTFKYFGHDNVHILNGGITKWKNEKRELEKGEPQQVVAGASYKAEPNEVLAVSW
                     EDVLAKIDTETQIVDARGAARFYAKEPEPRPGMRGGHIPGSVNVPFGKIVSPDDYSLF
                     RDLGEIKSAFAEANVKMDETSQIITTCGSGVTASVLTFGLHLTGKPLEKVSVYDGSWS
                     EWGMRSDLPLETVAM"
     gap             184608..187081
                     /estimated_length=2474
     gap             194161..196775
                     /estimated_length=2615
     gap             200292..200391
                     /estimated_length=unknown
     gap             203076..208559
                     /estimated_length=5484
     gap             213935..214519
                     /estimated_length=585
     gap             221411..227968
                     /estimated_length=6558
     gap             231826..231925
                     /estimated_length=unknown
     gap             245414..246499
                     /estimated_length=1086
     gap             248715..249165
                     /estimated_length=451
     gap             253909..273006
                     /estimated_length=19098
     gap             274877..275881
                     /estimated_length=1005
     gap             282911..334591
                     /estimated_length=51681
     gene            <338762..>339542
                     /locus_tag="PITG_19741"
     mRNA            338762..339542
                     /locus_tag="PITG_19741"
                     /product="conserved hypothetical protein"
     CDS             338828..339442
                     /locus_tag="PITG_19741"
                     /codon_start=1
                     /product="conserved hypothetical protein"
                     /protein_id="EEY54645.1"
                     /translation="MSAVDVASSSSPVETDDAGRTMVAVGGMQNMAWASDTSKFGFKM
                     LVKMGWSAGKGVGKELQGQATHVKIARRSENLGVGCSLKQAEVQGWSQTAGGFADVLK
                     TLNKSYGSKSSSDADSSDEGSNSSSSKKAKKTKKEKKIKKETKVKKEKKAKKSKKASG
                     EKATVSRRLHYRKRQSNKDAKNYGAVEMAAILGVASSTYKPAAE"
     gene            <339736..>340230
                     /locus_tag="PITG_19742"
     mRNA            join(<339736..339896,339963..340039,340103..>340230)
                     /locus_tag="PITG_19742"
                     /product="conserved hypothetical protein"
     CDS             join(339736..339896,339963..340039,340103..>340230)
                     /locus_tag="PITG_19742"
                     /codon_start=1
                     /product="conserved hypothetical protein"
                     /protein_id="EEY54646.1"
                     /translation="MASVFVRNLPFGVTQEELEHVFSEIGPVRKIDVIKDKGKRKSEM
                     LTRGFAFVKFAVESDAAVAVEKLNKTDFQGRKMLIDYAMEKGKRRGLPGKEKPATDEP
                     KQDEKEQEDVPMGQPALPDE"
CONTIG      join(AATU01009192.1:1..7435,gap(30044),AATU01009193.1:1..874,
            gap(1388),AATU01009194.1:1..5741,gap(1302),AATU01009195.1:1..16159,
            gap(341),AATU01009196.1:1..2130,gap(2928),AATU01009197.1:1..987,
            gap(17858),AATU01009198.1:1..701,gap(2452),AATU01009199.1:1..21272,
            gap(13716),AATU01009200.1:1..2723,gap(unk100),
            AATU01009201.1:1..56456,gap(2474),AATU01009202.1:1..7079,gap(2615),
            AATU01009203.1:1..3516,gap(unk100),AATU01009204.1:1..2684,
            gap(5484),AATU01009205.1:1..5375,gap(585),AATU01009206.1:1..6891,
            gap(6558),AATU01009207.1:1..3857,gap(unk100),
            AATU01009208.1:1..13488,gap(1086),AATU01009209.1:1..2215,gap(451),
            AATU01009210.1:1..4743,gap(19098),AATU01009211.1:1..1870,gap(1005),
            AATU01009212.1:1..7029,gap(51681),AATU01009213.1:1..5653)
//