LOCUS       DQIR01134424            1536 bp    RNA     linear   TSA 28-FEB-2019
DEFINITION  TPA_asm: Sus scrofa Susscr4EVm009993t1, transcribed RNA sequence.
ACCESSION   DQIR01134424
VERSION     DQIR01134424.1
DBLINK      BioProject: PRJNA480168
            BioSample: SAMEA3303526, SAMEA3303527, SAMEA3303528, SAMEA3303529,
            SAMEA3303531, SAMEA3303532, SAMEA4447539, SAMEA4447549,
            SAMEA4447554, SAMN02925400, SAMN02925407, SAMN05952593,
            SAMN05952594, SAMN05952595, SAMN05952596, SAMN05952612,
            SAMN05952613, SAMN05952614, SAMN05952615, SAMN05952626,
            SAMN07956242, SAMN07956243, SAMN07956244, SAMN07956245,
            SAMN07956246, SAMN07956247
            Sequence Read Archive: ERR789444, ERR789445, ERR789446, ERR789447,
            ERR789449, ERR789450, ERR972387, ERR972388, ERR972389, SRR1519321,
            SRR1519322, SRR5027048, SRR5027049, SRR5027050, SRR5027051,
            SRR5027060, SRR5027061, SRR5027062, SRR5027063, SRR5027064,
            SRR6236876, SRR6236879, SRR6236881, SRR6236882, SRR6236888,
            SRR6236889
KEYWORDS    TSA; Transcriptome Shotgun Assembly; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sus scrofa (pig)
  ORGANISM  Sus scrofa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae;
            Sus.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Gilbert,D.G.
  TITLE     Genes of the pig, Sus scrofa, reconstructed with EvidentialGene
  JOURNAL   PeerJ 7, e6374 (2019)
   PUBMED   30723633
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Gilbert,D.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2018) Indiana University, IN, USA
COMMENT     RNA-Seq data of Sus_scrofa are assembled with various RNA
            assemblers, using multiple options.  EvidentialGene tr2aacds
            pipeline is used to process the many resulting assemblies by coding
            sequences, translated proteins, and gene evidence, then
            classify/reduce to a biologically informative transcriptome of
            primary and alternate transcripts.
            
            ##Assembly-Data-START##
            Assembly Method       :: EvidentialGene v2018.06.18
            Assembly Name         :: pig4321ew.evigene
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Sus scrofa"
                     /mol_type="transcribed RNA"
                     /submitter_seqid="Susscr4EVm009993t1"
                     /db_xref="taxon:9823"
     CDS             224..1309
                     /inference="similar to AA sequence:GenBank:NP_001158886.1"
                     /note="original_id:Susscrtrvelo1a_sNn6l1SRR6236876velvk85L
                     oc15722t1;
                     located at chr2:40814514-40823533:-, 100 pct aligned, 8
                     exons;
                     protein is 100 pct similar to human18nc:NP_001158886.1
                     gene.;
                     db_xref_other:GenBank:NP_001158886.1;
                     db_xref_other:pig18ncrf:XM_013994501.2"
                     /codon_start=1
                     /product="L-lactate dehydrogenase A chain isoform 3"
                     /protein_id="HDA89900.1"
                     /translation="MGEPSGGYTYTQTSILFFHAKIPFGSKSTMATLKDQLIHNLLKE
                     EHVPHNKITVVGVGAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLR
                     TPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNC
                     KLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWI
                     LGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYEVIKLKGY
                     TSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVK
                     VTLTPEEEAHLKKSADTLWGIQKELQF"
BASE COUNT          410 a          298 c          409 g          419 t
ORIGIN      
        1 gggagaggga gaagaaaacg agtgcttgcg catgggcgga gatcacagta ggccccactg
       61 gctccgggat agcgcggtga ggcggtgagg ccgttaaagg cactttaacc aagtactcgt
      121 ggtccttaag gggcttggca ggagtcctgg tgactggagt agagggtctc acagtgctct
      181 tgtttgagga aaggccagct ccacttggag ttaataagtc aagatgggtg agccatctgg
      241 aggctatact tacacgcaaa cgtcaatact gtttttccac gccaagattc cttttggttc
      301 taaatccact atggcaactc tcaaggatca gctgattcac aatcttctta aggaagagca
      361 tgttccccac aataagatta cagttgttgg ggttggtgct gttggcatgg cttgtgccat
      421 cagtatctta atgaaggaat tggcggatga aattgctctc gttgatgtca tggaagacaa
      481 actgaaggga gagatgatgg atctgcaaca tggcagcctt ttccttagga ccccaaaaat
      541 tgtctctggc aaagactata acgtgactgc aaactctagg ctggttgtta tcacagctgg
      601 ggcacgtcag caagagggag aaagccgtct taatttggtc cagcgtaatg tgaacatctt
      661 taaattcatc attcctaata ttgtaaaata cagcccaaac tgcaagttgc ttgttgtttc
      721 caatccagtg gatatcttga cctatgtggc ttggaagata agtggctttc ccaaaaaccg
      781 tgttattgga agtggttgca atttggattc agcccggttc cgttacctaa tgggggaaag
      841 gctgggagtt caccccctaa gctgtcatgg gtggatcctt ggggagcatg gagactctag
      901 tgtgcctgtg tggagcggag taaatgttgc tggtgtctcc ctgaagaatc tgcaccctga
      961 attaggcact gatgcagata aggaacactg gaaagcggtt cacaaacagg tggtggacag
     1021 tgcttatgag gtgatcaaac tgaaaggcta cacgtcctgg gccattggac tatctgtggc
     1081 agatctggca gaaagtataa tgaagaatct taggcgggtg catccgattt ccaccatgat
     1141 taagggtctc tatgggataa aagaggatgt cttccttagt gttccttgca tcttgggaca
     1201 gaatggaatc tcagatgttg tgaaagtgac tctgactcct gaggaagagg ctcatttgaa
     1261 gaagagtgca gatacacttt gggggatcca gaaagagctg caattttaaa gtctctcata
     1321 acataccact ttcactgtct aggctacaac aagattttag ttggaggttg tgcatattgt
     1381 tctttttatc tgatctgtga ctaaagcagt aatgttaaga cagcctagga aaaacagcca
     1441 tttcctaaag ttaggagtgg ttcataaacc cccacagctg tatcctgatg ttggatggta
     1501 cttatcttgt gtagtcctaa attggttctt gtaaaa
//