LOCUS DQ309025 8708 bp DNA linear HUM 07-DEC-2005 DEFINITION Homo sapiens transforming growth factor beta 1 induced transcript 1 (TGFB1I1) gene, complete cds. ACCESSION DQ309025 VERSION DQ309025.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 8708) AUTHORS Livingston,R.J., Rieder,M.J., Shaffer,T., Bertucci,C., Baier,C.N., Rajkumar,N., Willa,H.T., Daniels,M., Downing,T.K., Stanaway,I.B., Nguyen,C.P., Gildersleeve,H., Cassidy,C.M., Johnson,E.J., Swanson,J.E., McFarland,I., Yool,B., Park,C. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (28-NOV-2005) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..8708 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 224 /frequency="0.22" /replace="t" variation 639 /frequency="0.01" /replace="a" misc_feature 652..1629 /note="Region not scanned for variation" variation 1731 /frequency="0.02" /replace="a" variation 1865 /frequency="0.01" /replace="c" gene 2001..6755 /gene="TGFB1I1" mRNA join(2001..2046,2237..2352,2478..2530,2631..2773, 2948..3035,3146..3251,3359..3553,4808..4981,5277..5358, 5658..5806,6106..6755) /gene="TGFB1I1" /product="transforming growth factor beta 1 induced transcript 1" variation 2023 /gene="TGFB1I1" /frequency="0.01" /replace="t" variation 2059 /gene="TGFB1I1" /frequency="0.01" /replace="t" variation 2073 /gene="TGFB1I1" /frequency="0.02" /replace="c" variation 2119 /gene="TGFB1I1" /frequency="0.02" /replace="t" CDS join(2275..2352,2478..2530,2631..2773,2948..3035, 3146..3251,3359..3553,4808..4981,5277..5358,5658..5806, 6106..6372) /gene="TGFB1I1" /codon_start=1 /product="transforming growth factor beta 1 induced transcript 1" /protein_id="ABB96286.1" /translation="MPRSGAPKERPAEPLTPPPSYGHQPQTGSGESSGASGDKDHLYS TVCKPRSPKPAAPAAPPFSSSSGVLGTGLCELDRLLQELNATQFNITDEIMSQFPSSK VASGEQKEDQSEDKKRPSLPSSPSPGLPKASATSATLELDRLMASLSDFRVQNHLPAS GPTQPPVVSSTNEGSPSPPEPTGKGSLDTMLGLLQSDLSRRGVPTQAKGLCGSCNKPI AGQVVTALGRAWHPEHFVCGGCSTALGGSSFFEKDGAPFCPECYFERFSPRCGFCNQP IRHKMVTALGTHWHPEHFCCVSCGEPFGDEGFHEREGRPYCRRDFLQLFAPRCQGCQG PILDNYISALSALWHPDCFVCRECFAPFSGGSFFEHEGRPLCENHFHARRGSLCATCG LPVTGRCVSALGRRFHPDHFTCTFCLRPLTKGSFQERAGKPYCQPCFLKLFG" variation 2463 /gene="TGFB1I1" /frequency="0.01" /replace="a" variation 2537 /gene="TGFB1I1" /frequency="0.01" /replace="a" variation 3009 /gene="TGFB1I1" /frequency="0.03" /replace="c" variation 3050 /gene="TGFB1I1" /frequency="0.01" /replace="a" variation 3056 /gene="TGFB1I1" /frequency="0.01" /replace="t" variation 3265 /gene="TGFB1I1" /frequency="0.01" /replace="c" repeat_region 3650..3746 /gene="TGFB1I1" /rpt_family="MIR" /rpt_type=dispersed repeat_region 3754..3842 /gene="TGFB1I1" /rpt_family="MIR" /rpt_type=dispersed variation 3989 /gene="TGFB1I1" /frequency="0.01" /replace="a" repeat_region 4036..4210 /gene="TGFB1I1" /rpt_family="AcHobo" /rpt_type=dispersed repeat_region 4211..4512 /gene="TGFB1I1" /rpt_family="Alu" /rpt_type=dispersed variation 4325 /gene="TGFB1I1" /frequency="0.03" /replace="c" repeat_region 4513..4624 /gene="TGFB1I1" /rpt_family="AcHobo" /rpt_type=dispersed variation 4527 /gene="TGFB1I1" /frequency="0.01" /replace="a" variation 5239 /gene="TGFB1I1" /frequency="0.02" /replace="t" variation 5399 /gene="TGFB1I1" /frequency="0.02" /replace="t" variation 5850..5891 /gene="TGFB1I1" /frequency="0.01" /replace="" variation 5935 /gene="TGFB1I1" /frequency="0.04" /replace="c" variation 5982 /gene="TGFB1I1" /frequency="0.01" /replace="a" variation 6391 /gene="TGFB1I1" /frequency="0.42" /replace="g" variation 6508 /gene="TGFB1I1" /frequency="0.14" /replace="t" variation 6556 /gene="TGFB1I1" /frequency="0.01" /replace="a" repeat_region 6875..6995 /rpt_family="MIR" /rpt_type=dispersed repeat_region 7077..7217 /rpt_family="Alu" /rpt_type=dispersed variation 7216 /frequency="0.15" /replace="a" repeat_region 7249..7611 /rpt_family="Alu" /rpt_type=dispersed misc_feature 7383..7523 /note="Region not scanned for variation" repeat_region 7928..8230 /rpt_family="L2" /rpt_type=dispersed variation 7958 /frequency="0.01" /replace="t" variation 8093 /frequency="0.01" /replace="t" variation 8122 /frequency="0.05" /replace="g" variation 8271 /frequency="0.04" /replace="g" variation 8317 /frequency="0.03" /replace="t" repeat_region 8564..8699 /rpt_family="L2" /rpt_type=dispersed BASE COUNT 1662 a 2638 c 2450 g 1958 t ORIGIN 1 tactcacatt ccagtgctca gatctgtcca gaagagtggc tgcagcacag ttgtctgtcc 61 ataactacct ctatggcctc tcgtttccac ctcgtttctc agggtctcag tccagggaag 121 gccttgccac tttgtggctg gagactgtgt cttgctttct gctctgagtt catcagtaac 181 ttgggaaagg gctgtttcag agcaggcctg ggccacctca gtgctgagga agggctttgt 241 cttgcaggct ggctgggggt tggttgcctg ggagtgtttt ccccgaattt gcaaggggct 301 tgcgcccggg ttcgagttta cgtgtgtcca tgaccaagtc ttggagggaa ggtcctagtg 361 tagagtctgt gggtgggttc actgtgtctg tccccgtccc tcagatttct ttgtgtctgg 421 tatgtatgcc tcttggggcc tctatttatc tgtcagggtc tccgatggga gggtctccga 481 acctgaggtc taattgagcc ttagaatatc actcctgcta ccaatccaaa aattccgtct 541 gggacaagtc tcccaggaat ggcatgggtg ggagggaggc tcttgtctag gactcaggcg 601 ctagctttga gcggtgtctg tttgggggcc tcagtccgtg tctgtaagtc tccctaggga 661 gcggctctgg ggcttggtct ggagaagcca cttctctctg gctctggcct cctggggctc 721 cctgcagctg aggccaaggc tggggtgtgg ccgcctccgc ggcaggccgg cgggctgggc 781 tcgggtgggc cggggcgctc cctcctttcc acgcccccac ctcgggttcc cccgttcatc 841 gcccccccat ccccatctca gcgggtcccg gcttccttac atggtcacgg ccgggcttcc 901 agctcccgga cgtcccccgc cccccgcccc caccggacac ggcccccgcc ctgttcgccc 961 cgcgccaccg gcccgcgccc cgccatggag gacctgggtg agtggggccg gatccccggg 1021 tccgtggccc ctcaccgctg cccagagctg cctccccgcc gtcgctctcc cgcatctccc 1081 catccctgtc ttcttacttc tgcttttcgc ctctgcccgc gcctcctttc caactccacg 1141 tcccccttcc tgcctctccc ttcctgcctt tcctgggccg gccgctccct cccttcttcc 1201 ctcgctgtgc tcctccatcc caggctgcgg cagatggaac gggaggtgcg gcgcccgcgg 1261 gcgcccgggc gcggggctct ggggagggag gggttaaagg ggcctcggcc cggggaccgg 1321 gaaagtagag ggcacgggaa agtctggcat caagttttgg agaaaaaaag cgggcctgcc 1381 tgcaccagag ttttgggaga ggaggagtta agggctcctg agcacagtga gggtcaggtc 1441 cttgaggcaa ggaagagaat agtaactcag gagtgcctag gcgcccgcga aggcttcagg 1501 gtttcacgcg ggtgctcaga gacgaagact gagggcagga cttctgggtt ctggaagtga 1561 aagggctcaa aagacccgga tctggggatg cagggatgga gagaggtgtc ttgtccggaa 1621 gggggaccca ggtatctcgt cctccctgcg aagcctgggg ctggaaggct gtgcgctcca 1681 cgggagagag gggcttccgg cccctggcgg tagagggcgc tgctcggtag gggtaactga 1741 cgctgtaccg cagataaaca gccaatcaga aggcaggtcc cagcgaagcg ccagtgagga 1801 gcccagggcg ggactcaggg gcctgggagt ggccaggctg ggcggggcct gtgtaggtag 1861 agggaggagt taaccagcat ggaagagaga gcgtccaatc agaaagctga gggccaggca 1921 ctgggccaat ggagcaattt ggaggggagc caaatttggc ttgggtgaag agcccatttt 1981 gactgcatca gagaagatgg ggagaataaa ataatcagga ggctgggttt gtgcttggct 2041 ccaagcgtga gcaactggga tattctggtc ataaatattc cttgctaccc ttcgagcagt 2101 gctctgcctg gctctggccc tgtgacctct tctcttaata ctggcttctg tccttctcca 2161 gtactgccca ctgggaacct tatcttctga tctaaccgtg acccttgtct ctctccctga 2221 tggcctcttc ctgcagatgc cctgctctct gacctggaga ctaccacctc gcacatgcca 2281 aggtcagggg ctcccaaaga gcgccctgcg gagcctctca cccctccccc atcctatggc 2341 caccagccac aggtgagatc ggatgttggg gactggggca gccactaggg ccaggctcgg 2401 cctggtctat ggggatctca gcctcagtgg ggcagagtgc aggcctgtca tcccacctgt 2461 gcgtctccgc tctgtagaca gggtctgggg agtcttcagg agcctcgggg gacaaggacc 2521 acctgtacag gtgaggggcc tggaaaccag ggcatggggg ccaactgagt ctcaggtgag 2581 gaggcttgga ttccccaccc ctgaacccag gctcccactc tgcttcccag cacggtatgc 2641 aagcctcggt ccccaaagcc tgcagccccg gcggcccctc cattctcctc ttccagcggt 2701 gtcttgggta ccgggctctg tgagctagat cggttgcttc aggaacttaa tgccactcag 2761 ttcaacatca caggtaccag ggtgactgag agaggccttg atgcgatagg ggcaggggag 2821 ggaagggtgg ggcagagact aagaggaata cacttcccag agtagcagtt aaagggacct 2881 aaagcctcaa gtgtgagggt gcgttgagca tggccctata tgtagcgtcc tcctctcctc 2941 tctccagatg aaatcatgtc tcagttccca tctagcaagg tggcttcagg agagcagaag 3001 gaggaccagt ctgaagataa gaaaagaccc agcctgtgag tttggcgtcg ttgtcagggc 3061 tgagagatga gtcctggata tctgagtcac tagagggagc gttgctctgg gaggctctga 3121 gatgacacaa gcatgttctt cacagccctt ccagcccgtc tcctggcctc ccaaaggctt 3181 ctgccacctc agccactctg gagctggata gactgatggc ctcactctct gacttccgcg 3241 ttcaaaacca tgtgagttgg gcagtgggcc agtgtccatt tgtggctccc caaccccttc 3301 tagacaattc cacatctgct gctttgctga ctcaattctc atgtcctccc cgctgcagct 3361 tccagcctct gggccaactc agccaccggt ggtgagctcc acaaatgagg gctccccatc 3421 cccaccagag ccgactggca agggcagcct agacaccatg ctggggctgc tgcagtccga 3481 cctcagccgc cggggtgttc ccacccaggc caaaggcctc tgtggctcct gcaataaacc 3541 tattgctggg caagtaagtg gagccttgtg agaagggagg cagagacctg tcacagaccc 3601 atctttagtg agagctgggc tttatgctgt tcccttttag taagttaatc tgggaagtgg 3661 gtatcattat tacttatgtt ttatggatga ggaaactgaa gctctgaacc acacagcagg 3721 ttagtggtag ggtgaaaatt ccaaccatgt taccatttat tgtggtccta ctgtgtgcca 3781 ggcactgtgc cagctccttt acaaaccctc atctcatctg atcttcacaa aacactctgt 3841 ggctccaccc aatatctctc aggcatctac aaaggctctc tcttcctccg tcagagtctg 3901 gactgggttc actggtcctt gttttattga ctgagcagat gtgattgaca acagctgtgc 3961 ctaggggtta acctagtgcc ccctgctaga tcaagtacct gactcccagc ccagaattgc 4021 ccatctcagc aaaggagggt ggcattgtga cttttgtgga tcataggcac tttcatcttc 4081 atgagtccct tcgtccatta aaataaatag atttttatgt ctgtgttggt gtaaagatgg 4141 gtatgttatt attgtgtatt acagcatttt cttctagttc atttttttat tctgaatttt 4201 taaaaacgga tttttcactt cctccctctt atttattttg aggcaaattc tcactcttgt 4261 gacccaagct ggagtgcagt ggtgcgattg tggctcactg cagcctcgac cttctgggct 4321 caagtgatcc tcccagctca gcctcccgag tagctgggac taaaggcgcc cgccacctcg 4381 cccagctaat tttatttatt tattgtagag atggggcttc gccatgttgc ccaggctggt 4441 ctcaaactcc tggactcaag taatcctccc acctcagcct cccaaatgct aggattagag 4501 gcacgagcca cccagcctga tcgtattttg attttaaaaa aattaaaacg tttttatggg 4561 cccctaaatg tattgtgggc tccaggcgct gtgcctgctg tgcctcatgt ataggtcaat 4621 cctggagcgc agctggaaga cggaacacgg gagctagatc tccatcgctt acaggctgcg 4681 tgatctcgaa cactggattc tttattctga tcgctcagag aggactcgaa aaacgccgcg 4741 taaatcttgc ctcactgggc atgtggttgt cagagccgct ctgacccgcc tcacctccca 4801 ctcgcaggtg gtgacggctc tgggccgcgc ctggcacccc gagcacttcg tttgcggagg 4861 ctgttccacc gccctgggag gcagcagctt cttcgagaag gatggagccc ccttctgccc 4921 cgagtgctac tttgagcgct tctcgccaag atgtggcttc tgcaaccagc ccatccgaca 4981 cgtgagcccc gcccggccgc accgagcccg ccctatctca ccaggagagc tgtgggacgg 5041 gcctccaccg catgggtccc gccccacccg cgatacccca ctccacccct accccttccc 5101 cttggcaatg tccacggccc cttggactcc actcttcctt tctgaccccc acgttcctag 5161 ttagatcttc tccccctccc cccacgcatg ccttagtcca gtcacccggg ttccgcgcgg 5221 gagaggaagg cgcgaaggca cggaggccgc gctgagtgcc ctctccctcc ctgcagaaga 5281 tggtgaccgc cttgggcact cactggcacc cagagcattt ctgctgcgtc agttgcgggg 5341 agcccttcgg agatgagggt gagagtgaac tcgactccca tcttaaaagc tgcgggtccc 5401 ctcgacgtct cgccccagcc cctccgacct ccggagtcct cagggccatg gttttccttc 5461 tgctctcttc tggccctgcc ctctcctaca cagactccgg acccgagccc tccccgctct 5521 gtcccgccat agacccggct cctccttccc caaggctccc tcggactgcc cctccttcgg 5581 ccccagatct caggtcttgt gggtcccccg tcccgcccgc accctttgct ttcagcccac 5641 tcggttccct ctcctaggtt tccacgagcg cgagggccgc ccctactgcc gccgggactt 5701 cctgcagctg ttcgccccgc gctgccaggg ctgccagggc cccatcctgg ataactacat 5761 ctcggcgctc agcgcgctct ggcacccgga ctgtttcgtc tgcagggtgc gagctgcggg 5821 gcggggcgtt ggaggggcgg gtcaagggta cagggctgtg gggcggggcc ttggaggggc 5881 gggtcaaggg tgcagggcag ggggcgggcc ctcggggggg cgggtcacgg gaggtgctgc 5941 taggaacctc gggtggggcg agttttccgg gcagggtccc accggacggg attcttcgcg 6001 tctagggcgg gctgcggggt cccagggcgt tatccgctag taacgcgcgt tgtctggcag 6061 tggccgctga cctgtctgtc ctctttcgcg gcttcccttc cccaggaatg cttcgcgccc 6121 ttctcgggag gcagcttttt cgagcacgag ggccgcccgt tgtgcgagaa ccacttccac 6181 gcacgacgcg gctcgctgtg cgccacgtgt ggcctccctg tgaccggccg ctgcgtgtcg 6241 gccctgggtc gccgcttcca cccggaccac ttcacatgca ccttctgcct gcgcccgctc 6301 accaaggggt ccttccagga gcgcgccggc aagccctact gccagccctg cttcctgaag 6361 ctcttcggct gacagcccgc tcggctcgcc ctctcccccg gaggccgcgc cctcccggaa 6421 aagccgggtc ctccagaccc cgaggccttg ctctcagagc gggaggcccc acccactgga 6481 gagccccgcc cctaaggtac tatgagtcct caggggtcaa gttcagaaac ggcccagcca 6541 gacctaaacc cacacgccca caaagtggat tgcacacaga caagaactcc cgtgcgggcc 6601 tccactctat tcccaccctt gagggagccc ccttactggg ggagggtcct tgcaattcca 6661 gcgaatcgga ggccaggcca ggacgtcctt gctccctgca ccctcactgt tctgtgcact 6721 ttttctacct acataaacac acgcattcca cctctccctg gtgctgtctc tgaatgcgcg 6781 caggagcttg gccctgactc cccacccccg cgctggctct gtccccggcc gtctctaggt 6841 cactgccctg tggccgcagc gggacctgca gcctcagccc ttgcaggtag ccactcctgc 6901 acttcctact tcaagtatca gatgagcctg aggctggaaa gtgtggcgac tcgcgcagga 6961 ctgtacagat agtggcagag ccaggacaag agctccaact ggggccccac cgaatattcc 7021 cgccctcatt actctttctt cagttctata ttttgttttg ttttgttttg tcctaagaga 7081 tgaggtctca ctttgtcgcc caggctggag tacagtggtg ccatagctca ctgcaacctc 7141 gaactcctgg tcttgagcga tcctcccgcc ttggcctccc aaagtactgg gattgcaggt 7201 gtgagccact gtgcccgccc ttccctttat tcttgaaata agcgcttaca gtggttcatg 7261 cctgtaatcc tggcactgtg ggaggccagg gcgggtgaat cacttgaggc caggagtttg 7321 agaccagcct ggccaacatg gggaaacccc gtctctacta caaatacaaa aattagctgg 7381 gtatggtggc acacgcttgt aatcccagct tctctggagg ctgaggcagg agaatcaatt 7441 gaacttggga ggcagaggtt gcagtgagcc gagatcacgc cactgcactc cagcctgggc 7501 aacagagcga gactccgtct caaaaaaaaa aaaaaaaaaa aaaaaaagaa agaaaagaaa 7561 ggaagaaaga aagagaaagg aagaaggaag gaaggaagga gagagaaaga acttaatctg 7621 ctcccctcct gcactgcctt tggttcccag attttttctc ctattaaagg gccttgaggg 7681 atggagctct attcagagtg ccagctgtgc tcaccttttg gttctgggca ctaaggtaca 7741 gcttccctct tactattgac ccacaacatc ttggatcacc tgaatgtttc atgtagttac 7801 ggcctcagct taaccctttc tcactcccac ccccaggtgt cccagtcaag gcagaacaat 7861 cagcgcactc agagccatta cttactgtcc ctgctggcct gtctgccacc acctgaggct 7921 tctcccggcc tagccctgtg ctgggtggtg ctgggtccag agatgagtca ggctcactgc 7981 cctggagagc cccaggctga ggaggcagat acctggacag aggatgacac ttggtgtggc 8041 caggttgtga ctgagggaag cactgggggc tgtagaagcc agaaggtggc ttcttaaccc 8101 agactgggag tcaagggatg catcctggag taactgacac ccaagacctg agccaagtcc 8161 tagcagagaa ggatggggcc aggggttttc aggtgtggaa gatggagcca agggtttcag 8221 gtgtgaagaa gttcaggttc catctgagtc cctaagtccc agggtggtcc cctgggtcta 8281 gactctaggg acctctggtg ctggaaatga taggtcctca gagccctttc cagctcatca 8341 ggaagagcta gaagccgcag ggagcatgta tgggcacaag gaaaaggtga ggcgtccatg 8401 gccccagcct ctcccaggcc cccagatctc ttcctctcta aggctcctct cccatggtct 8461 tcccaggtct cctgctcttc cccttccaca tattctcccc aaagaatgta cccccaaccc 8521 cagcctgtaa tcacctccct atcttgagga tgcccaaatt ggcattcatt cattcaccaa 8581 atatttattg agcactcctg tgccaggctc tggggagaca atggggaacc aagcagctat 8641 gacccttgct ttcagggagc tgaagtctag tagcggagac agatgacagc caagtacaaa 8701 ggtgacat //