LOCUS DQ017955 5833 bp DNA linear HUM 08-MAY-2005 DEFINITION Homo sapiens small proline-rich protein 3 (SPRR3) gene, complete cds. ACCESSION DQ017955 VERSION DQ017955.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5833) AUTHORS Livingston,R.J., Rieder,M.J., Shaffer,T., Bertucci,C., Baier,C.N., Rajkumar,N., Willa,H.T., Daniels,M., Downing,T.K., Stanaway,I.B., Nguyen,C.P., Gildersleeve,H., Cassidy,C.M., Johnson,E.J., Swanson,J.E., McFarland,I., Yool,B., Park,C. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (26-APR-2005) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..5833 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 140 /frequency="0.01" /replace="g" variation 261 /frequency="0.01" /replace="c" variation 280 /frequency="0.49" /replace="t" variation 302 /frequency="0.02" /replace="c" variation 339 /frequency="0.03" /replace="t" variation 341 /frequency="0.07" /replace="a" variation 452 /frequency="0.49" /replace="a" variation 457 /frequency="0.40" /replace="t" variation 479 /frequency="0.03" /replace="g" variation 505 /frequency="0.04" /replace="a" variation 569 /frequency="0.39" /replace="a" variation 785 /frequency="0.02" /replace="t" variation 829 /frequency="0.02" /replace="t" variation 899 /frequency="0.50" /replace="t" variation 912..921 /frequency="0.50" /replace="" variation 936 /frequency="0.05" /replace="c" variation 1071 /frequency="0.03" /replace="a" variation 1224 /frequency="0.40" /replace="g" variation 1239 /frequency="0.06" /replace="a" variation 1331 /frequency="0.49" /replace="t" variation 1382 /frequency="0.03" /replace="t" variation 1450 /frequency="0.48" /replace="g" variation 1536 /frequency="0.39" /replace="t" misc_feature 1592..1824 /note="Region not scanned for variation" variation 1879 /frequency="0.49" /replace="c" gene 1985..4092 /gene="SPRR3" mRNA join(1985..2029,2839..2922,3238..4092) /gene="SPRR3" /product="small proline-rich protein 3" variation 2007 /gene="SPRR3" /frequency="0.50" /replace="c" variation 2014 /gene="SPRR3" /frequency="0.16" /replace="t" variation 2045 /gene="SPRR3" /frequency="0.50" /replace="a" repeat_region 2146..2223 /gene="SPRR3" /rpt_family="MIR" /rpt_type=dispersed misc_feature 2195..2339 /gene="SPRR3" /note="Region not scanned for variation" variation 2470 /gene="SPRR3" /frequency="0.01" /replace="t" variation 2492 /gene="SPRR3" /frequency="0.39" /replace="a" variation 2521 /gene="SPRR3" /frequency="0.01" /replace="c" variation 2670 /gene="SPRR3" /frequency="0.01" /replace="t" variation 2680 /gene="SPRR3" /frequency="0.04" /replace="a" variation 2798 /gene="SPRR3" /frequency="0.40" /replace="a" variation 2843 /gene="SPRR3" /frequency="0.40" /replace="t" variation 2876 /gene="SPRR3" /frequency="0.50" /replace="a" variation 2903 /gene="SPRR3" /frequency="0.40" /replace="g" variation 2923 /gene="SPRR3" /frequency="0.01" /replace="c" variation 2929 /gene="SPRR3" /frequency="0.03" /replace="a" variation 2941 /gene="SPRR3" /frequency="0.02" /replace="a" variation 2979 /gene="SPRR3" /frequency="0.07" /replace="g" variation 3001 /gene="SPRR3" /frequency="0.49" /replace="g" variation 3018 /gene="SPRR3" /frequency="0.07" /replace="g" variation 3037 /gene="SPRR3" /frequency="0.50" /replace="a" variation 3255 /gene="SPRR3" /frequency="0.49" /replace="a" CDS 3257..3766 /gene="SPRR3" /codon_start=1 /product="small proline-rich protein 3" /protein_id="AAY26394.1" /translation="MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSK VPQPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVP EPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGYTKVPVPGYTKVPEPCPSTVTPG PAQQKTKQK" variation 3475..3498 /gene="SPRR3" /frequency="0.59" /replace="" variation 3523 /gene="SPRR3" /frequency="0.49" /replace="c" variation 3589 /gene="SPRR3" /frequency="0.49" /replace="g" variation 3634 /gene="SPRR3" /frequency="0.01" /replace="c" variation 3701 /gene="SPRR3" /frequency="0.41" /replace="c" variation 3868 /gene="SPRR3" /frequency="0.49" /replace="t" variation 3874 /gene="SPRR3" /frequency="0.49" /replace="c" variation 3884 /gene="SPRR3" /frequency="0.03" /replace="t" variation 3962 /gene="SPRR3" /frequency="0.03" /replace="c" variation 4000 /gene="SPRR3" /frequency="0.01" /replace="a" variation 4050 /gene="SPRR3" /frequency="0.01" /replace="a" variation 4066 /gene="SPRR3" /frequency="0.50" /replace="t" variation 4234 /frequency="0.38" /replace="t" variation 4614 /frequency="0.01" /replace="g" variation 4679 /frequency="0.02" /replace="a" variation 4690 /frequency="0.01" /replace="t" misc_feature 4711..5832 /note="Region not scanned for variation" repeat_region 4875..5833 /rpt_family="L1" /rpt_type=dispersed BASE COUNT 1607 a 1356 c 1247 g 1623 t ORIGIN 1 cacacacaag tcccaagaaa gtcccaggac agtgcagttg gatgactcac agcctcctgc 61 caccagagaa gggagccagt gggaaagact aaggtacctg gggaagtggg actcgccttc 121 agaagccact caatgtatcc tctctaaaac tgaggccaga cttaccagca cacccaacac 181 tgctcatgag aaaacaaagc ttctctgaaa gaggcttaac gttcaggcgc tgagtgtgtt 241 tgactaaaca ggaataacag ggttggggta aaacgagaac ttcaataagc tgatggcaga 301 gaagcttttg ttggggtgaa tgaggcaaga gttagagaag ggcaggagag agcccgccca 361 gggaagggac acaggaaatc agaaaggaat ttcctctaga accaaggtgc agaatcgagg 421 aagaaaatga gggagaccag gattcataga ggagctgcct tcctctgggg aggaaaatcc 481 caggtggagc agcagggtct agccgaagcc cccagggtct gtggctcctg agaggtggat 541 ttgctgagga gagaaacctg gacccaaccc tgaaaaagag ctaatgtgat gacagagccc 601 agagtttagg catggcagtg gccctggccc atcccagagg gaagtggccg gtcaaacaaa 661 tgctagcaga gagggaagga catgggtgtg gaagggaggg taagcctctt ctccttcatg 721 aattatcagc tcacacctct tctcagctca caccaggagg cctggcacag gacagtgaat 781 catgcccaag aaactgcctt gtggcttcct gccttcctcc ctccctccct atctttcctc 841 ttttcttttc tcttttcttt tcttttcctt tccttcccct ccccttcctt tcttccttcc 901 tttctttctt tttctttcct tctctctctc tctctttctt tctttctttc ctttcttctt 961 tatctatctc tgtttctttc tcacttcctt tctcccttcc atgaacctac agctctattc 1021 aggagaacaa tgactgtcca ttgacttaac acccatgata accaggcact gtgtgacgct 1081 gaagtagaac aaggggcttt cagaacctgg tggaaggagc tgggcatcag gttcaaggga 1141 gtaacacagt cgtggaacat tgggaaagga ggagctattc acatgcctga gatgtaagga 1201 tgtctggatt ttccaagggc cgcatctagt aagagagtgt gtattgaggg caactctgag 1261 ttagtgactt gaggttcatc ctgtagtgat cagaggaaat ggctggtgta tgaacctagg 1321 gaatcagcac gctcctcttc ctatgtcact cctggagaag aaagatacca caagaggcag 1381 ggtcttcagg gctgagccac aatgtcacac agatccagtc aatcctgcct gtccatctca 1441 atgacatcta ctatccctga tcaacacggc accttaaggc gcccttcaca gtgaaagcaa 1501 cttatttcca aagcaggcat tttgccttcc attgcccctc ccaggtccaa atccagtaag 1561 agactgaaaa tcagatgatt cacttattct gcaccatccc catggcctcg cagaaccaga 1621 aatgcctatt gttatttcca tgtccacttc aaccatgagg aagcccaata ggactaatct 1681 ggctaaagat tagggcccag gccaagaggc ctggctcgtt ctagtcctag gagcatggta 1741 cttcctccta atttaatcca ttgccattca agaagacctt tgcccacagc aaccacacca 1801 caaagggtgg acagtgagtc aggcccaggt gacatcactg tcagagctta agtgacaaaa 1861 aatgttaagc cagagatatt tatcacaaaa gctggaatga agttagagca gtcttttaaa 1921 aaatccaatt ttcttaaggc agggctcatt ttctatataa ataccagcta acaagagact 1981 cttcaccaga tcccagaggc tgaacacctc gaccttctct gcacagcagg tgagtctccg 2041 cattaggaac accttaatat tctccaatag tttctttatt ttgattgaga tctctttgct 2101 atgcaatgaa tatatttatt ttaaatgcaa taacgacttt tgtttaaggt gaccttatac 2161 atattttgac tttccactca gattacaggt gtggaactta ggatcagaaa aggggagtga 2221 tttctgtaaa ggcttgctaa gttagcaaga caatataccc acttcaagag cactctcctg 2281 tcaacatgta ttgaaaattt ttaatataga aggcactaca ttggcaattt tgatgatcaa 2341 aagataagtt tttctttatt gcatgaatgt ataatccatt agaaaacata tacttgacta 2401 aaatttgcaa acatacagca tggggagtga ttagcagaga gggaaagcaa gtatcatgct 2461 gtggcaaaac gaggaaggtg agagcatcag ggaggacagc catgagaggt gggcatgtgt 2521 ggggaggcag cgatgatgtg gagagcctgc cagagagcat gtgcagcagg cacagtgtga 2581 acagaggctc ccaggtggat tgtgggagcc ttagggggaa gtttagataa gagttctcct 2641 gggagaacta tcgcactcta taaggaggac atgagtgagt agattctaga ctgctgacct 2701 taaaatcttt ccaacttatg gaaaaactga ggtgtcacat caatcttcag ccaatgacac 2761 acagccaaga gtggtattaa aagtgattta atcagggcag agcaagaaac atgcatttct 2821 tttcactcaa ttcctcagat gaaccctgag cagctgaaga ccagaaaagc cactaagact 2881 ttctgcttaa ttcaggagct tacaggattc ttcaaagagt gtgtaagcga aagcttcaga 2941 gtatatattt gcatatttgt atgtgttttc atgttgtacg taggttttta gatgtaccag 3001 aaagaaaaga agcataaaga aaggctccat ttacacgatg tggaagaaat caactttacc 3061 ttattctctg gaagataagt ggggatcacc aaagcatccc atgatctcaa attcagggaa 3121 aaagaaagaa aagagaggct ctcagttctg aaggagaatg aaatgacaga tatttgtcat 3181 taaactgggc ttcattccta cttaatcaaa gcactgaatt agctgttttg tctctaggtc 3241 cagcatcctt tgaagcatga gttcttacca gcagaagcag acctttaccc caccacctca 3301 gcttcaacag cagcaggtga aacaacccag ccagcctcca cctcaggaaa tatttgttcc 3361 cacaaccaag gagccatgcc actcaaaggt tccacaacct ggaaacacaa agattccaga 3421 gccaggctgt accaaggtcc ctgagccagg ctgtaccaag gtccctgagc caggctgtac 3481 caaggtccct gagccaggtt gtaccaaggt ccctgagcca ggatgtacca aggtccctga 3541 gccaggttgt accaaggtcc ctgagccagg ctacaccaag gtccctgaac caggcagcat 3601 caaggtccct gaccaaggct tcatcaagtt tcctgagcca ggtgccatca aagttcctga 3661 gcaaggatac accaaagttc ctgtgccagg ctacacaaag gtaccagagc catgtccttc 3721 aacggtcact ccaggcccag ctcagcagaa gaccaagcag aagtaatttg gtgcacagac 3781 aagcccttga gaagccaacc accagatgct ggacaccctc ttcccatctg tttctgtgtc 3841 ttaattgtct gtagaccttg taatcagcac attgtcaccc caagccatag tctctctctt 3901 atttgtatcc taaaaatacg tactataaag cttttgttca cacacactct gaagaatcct 3961 gtaagcccct gaattaagca gaaagtcttc atggcttttc tggtcttcgg ctgctcaggg 4021 ttcatctgaa gattcgaatg aaaagaaatg catgtttcct gctcttccct cattaaattg 4081 cttttaattc cagtcttggc tgtgtgtgtc attggcagaa tcttcctcct tccttgtttc 4141 cccattgtga gtcaggacct atagacagag aggagttgat gtagaagtca tctatttaac 4201 cccagtactg tttgtttcta tgggtgtatg ggggtacagt tgaggtgttc ctggaatggc 4261 aatgggcctg gtgtgatgtt gaatagaagt tgtcactttg ggcagccaca ggctctcctc 4321 ttgcactgga ctgagtcatg cctgactcca agccacctgt tccaagacac ctctgatcct 4381 cagtatcctg acaacaaatc tcctgtttgt tccaagaaaa ctttactcct acatattttg 4441 actggacagt ctatttttct tcatttgttt taccttctag ataccccacc acacacatac 4501 acacacacac acacgcacac acacacacag agtcattcac aaagagaaac attcatttta 4561 aatagccaca cagtcacata atcattcaca caagctctac cctctctagc tcaatgttat 4621 tttttctaag taactcttat gtgcagagat ccctaaagat ggaccagcaa gagagagaga 4681 ggaggatacg cagcacctcc cttgtagaat ttgcagtctt gtttacgagt taggatattc 4741 atgcccttct aatacaaatg agtacacaac catacacaca aacacacaca cacacactcc 4801 cagtggtgtt ccaaaataac cctcagaaat ctattaagtg atttttattt tattattatt 4861 attattatta ttatacttta agttttaggg tacatgtgca caatgtgcag gttagttaca 4921 tatgtataca tgtgccatgc tggtgcgctg cacccactaa ctcatcatct agcattaggt 4981 atatctccca atgctgtccc tcccccctcc ccccacccca caacagtccc cagagtgtga 5041 tgttcccctt cctgtgtcca tgtgttctca ttgttcaatt cccacctatg agtgagaata 5101 tgcggtgttt ggttttttgt tcttgcgata gtttactgag aatgatgatt tccaatttca 5161 tccatgtccc tacaaaggac atgaactcat cattttttat ggctgcatag gattccatgg 5221 tgtatatgtg ccacattttc ttaatccagt ctatcattgt tggacatttg ggctggttcc 5281 aagtctttgc tattgtgaat aatgccgcaa taaatatacg tgtgcatgtg tctttgtagc 5341 agcatgattt atagtccttt gggtatatac ccagtaatgg gatggctggg tcaaatggta 5401 tttctagttc tagatccctg aggaatcgcc acaccgactt ccacaatggt tgaactagtt 5461 tacagtccca ccaacagtgt aaaagtgttc ctatttctcc acatcctctc cagcacctgt 5521 tgtttcctga ctttttaatg attgccattc taactggtgt gaaatggtat ctcattgtgg 5581 ttttgatttg catttctctg atggccagtg atggtgaaca ttttttcatg tgttttttgg 5641 ctacataaat gtcttctttt gagaagtgtc tgttcatgtc ctttgcccac tttttgatgg 5701 ggttatttgt ttttttcttg taaatttgtt tgagttcatt gtagattctg gatattagcc 5761 ctttgtcaga tgagtaggtt gcgaaaattt tctcccattt tgtaggtcgc ctgttcactc 5821 tgatggtagt ttc //