LOCUS DMCP01000265 2545 bp DNA linear ENV 04-SEP-2018 DEFINITION TPA_asm: Blastocatellia bacterium isolate UBA10893 contig_15529, whole genome shotgun sequence. ACCESSION DMCP01000265 DMCP01000000 VERSION DMCP01000265.1 DBLINK BioProject: PRJNA417962 BioSample: SAMN08017629 Sequence Read Archive: SRR6482561 KEYWORDS WGS; Third Party Data; TPA; TPA:assembly. SOURCE Blastocatellia bacterium (soil metagenome) ORGANISM Blastocatellia bacterium Bacteria; Acidobacteria; Blastocatellia. REFERENCE 1 (bases 1 to 2545) AUTHORS Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A., Chaumeil,P.A. and Hugenholtz,P. TITLE A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life JOURNAL Nat. Biotechnol. (2018) In press PUBMED 30148503 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 2545) AUTHORS Parks,D.H. TITLE Direct Submission JOURNAL Submitted (04-APR-2018) School of Chemistry and Molecular Biosciences, University of Queensland, Chemistry Bld, Cooper Road, St Lucia, Brisbane, Queensland 4072, Australia COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: CLC de novo assembler v. 4.4.1 Expected Final Version :: yes Genome Coverage :: 16.54x Sequencing Technology :: Illumina HiSeq 2000 ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/17/2018 13:03:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,806 CDS (total) :: 4,761 Genes (coding) :: 4,629 CDS (coding) :: 4,629 Genes (RNA) :: 45 tRNAs :: 41 ncRNAs :: 4 Pseudo Genes (total) :: 132 Pseudo Genes (ambiguous residues) :: 18 of 132 Pseudo Genes (frameshifted) :: 48 of 132 Pseudo Genes (incomplete) :: 73 of 132 Pseudo Genes (internal stop) :: 14 of 132 Pseudo Genes (multiple problems) :: 21 of 132 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2545 /organism="Blastocatellia bacterium" /mol_type="genomic DNA" /isolate="UBA10893" /isolation_source="soil" /db_xref="taxon:2052146" /environmental_sample /note="metagenomic; derived from metagenome: soil metagenome" gene complement(<1..200) /locus_tag="DCK99_16560" CDS complement(<1..200) /locus_tag="DCK99_16560" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_006984027.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="PAS domain-containing sensor histidine kinase" /protein_id="HAF15272.1" /translation="MKSGFLEKLIGRLGRIAPEEVQNYLIRLAEEKGFFETVFNAIQE GIIVTDSNGRITYVNEAACELFG" gene 412..1110 /locus_tag="DCK99_16565" CDS 412..1110 /locus_tag="DCK99_16565" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019499851.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="glycosyl transferase" /protein_id="HAF15273.1" /translation="MKVSIVIPCYNEKNTIAKIVEAVRSAPVENKEIIVIDDGSNDGT QTLLREKLSGAVDQIIYHPTNRGKGAALRTGFEAASGDIILIQDADLEYSPEEYPLLL EPIISGKADAVFGSRFMGGRPHRVLFFWHMAGNRFLTLLSNMFTNLNLTDIETGYKAF EASLIKSIKIEEDRFGVEPEIIAKLARTGCRIYEVGISYSGRTYAEGKKINWTDGVRA IYAILKYNLKWCQT" gene complement(1230..1469) /locus_tag="DCK99_16570" CDS complement(1230..1469) /locus_tag="DCK99_16570" /inference="COORDINATES: ab initio prediction:GeneMarkS+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="HAF15274.1" /translation="MWSGCRSPNLLRLVPVLCVAVLLFNTYRLYKGAYFFGWMTSTIV IGSLSQQRQNFRLVQERDDDAQFRPLHVAASHSIK" gene complement(1474..1800) /locus_tag="DCK99_16575" CDS complement(1474..1800) /locus_tag="DCK99_16575" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003442874.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="HAF15275.1" /translation="MAKIISFINYKGGVGKTTTTFHIGCALARFEPKKKVLLIDADPQ TNPTFLCCVNFGLFRLDAENAVALWDSPAHGDALDDIRAEVEASAVFYEWFVQRSAPS KNVACD" gene complement(2086..2511) /locus_tag="DCK99_16580" CDS complement(2086..2511) /locus_tag="DCK99_16580" /inference="COORDINATES: ab initio prediction:GeneMarkS+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="HAF15276.1" /translation="MEGLLKKWSKMQFAPAVISLVLTVAVDLCAETVQYFQACLPEYV KPTDVVSTRLVQTDSGTLVEKVTVEQKLTELKADCKNGRLVDGAGTEIYFYKLTGCWG NAPHNYQEILERQQAELAILRKQYTVIEMTCNPSGLPIP" BASE COUNT 643 a 662 c 633 g 607 t ORIGIN 1 ccaaacaatt cgcaggccgc ctcattcacg taggtgatgc gaccgttcga atcggtgacg 61 atgatgcctt cctggatggc gttgaaaacg gtttcgaaaa atcctttttc ctccgcgaga 121 cggattagat aattttgcac ctcctccggc gcgatccgtc cgaggcgccc gatcagtttt 181 tcaagaaaac ccgatttcat ttcgttatgc tggaaacggc ggctgcggtt atggagcggg 241 cacgttggcc tggcccaaca cgcattgctt gaaccatcgt gtcaaacgtc gcaatctcat 301 cgacgcgcgt aataatgaga agatagtcat gagcagtatg aagacgtcgt cacggcctgc 361 cgagcaatcc gtccatattc gacgcacgaa tgcacacgca ccactgagcc tatgaaggtt 421 tcaattgtca ttccgtgcta taacgaaaag aacacgatcg cgaaaatcgt cgaggcggtg 481 cgcagcgccc cggttgaaaa caaagagatc attgtgatcg atgatggctc taatgatgga 541 actcaaactt tactgcggga aaagctttcc ggtgcggtcg accagattat ttaccacccc 601 accaatcgag gaaaaggcgc ggccctgcgc acgggtttcg aagcggcgag cggagacatt 661 attttgattc aggatgccga tctcgagtac agtcccgagg aatatccgct gcttctcgag 721 ccaattattt ctggaaaggc ggacgccgtc tttggctccc ggttcatggg cgggcgtccg 781 catcgcgttc tttttttctg gcacatggcc ggcaacaggt ttttgacact gctttccaac 841 atgtttacca acctcaatct gacggacatc gagacaggtt ataaagcctt cgaggcttct 901 cttatcaaat cgattaagat tgaagaagac cgtttcggcg ttgagccgga aattatcgcc 961 aagctcgccc gaacgggttg tagaatctac gaagtgggta tttcctacag cggtcggact 1021 tatgcggaag gtaagaagat taattggaca gacggcgtga gagccattta cgccatactg 1081 aaatacaatc tcaaatggtg ccagacctga gcgaccggtc ttccttagcc cctatgagca 1141 agttgcgtcg gagtttgacc gactgatttg ttgactcggg cgcaggtcgg cgattatctt 1201 agaggtacaa tccgtaactg cccaaaaagt tatttaatcg aatgactagc agcaacatga 1261 agcggcctga actgagcgtc gtcatccctt tcttgaacga ggcgaaagtt ttgccgctgt 1321 tgcgagagcg acccaataac gattgttgaa gtcatccagc caaaaaaata ggcgcctttg 1381 tatagacggt atgtgttgaa aagcaggacg gcaacgcaga gaacaggaac gagacgcagg 1441 agattcggac tccggcaacc actccacata tgtctaatcg cacgcaacgt ttttcgacgg 1501 agccgagcgc tgaacgaacc attcataaaa aacggcggaa gcttcgacct ctgctcgaat 1561 atcgtcaagc gcatctccat gcgccggaga atcccacaac gccacggcat tttctgcatc 1621 caggcgaaat aatccgaagt tcacgcagca caaaaatgtc gggttcgttt gtgggtctgc 1681 gtcgatgagc agcacctttt tcttcggctc gaacctcgct agagcacaac cgatatgaaa 1741 agttgtcgtc gttttcccaa cgccgccctt gtagttaatg aatgagatga tctttgccat 1801 cacgaatttc aggttgcctc acgcgcgctc aggacagaat tattcaaaca aagaacttag 1861 gagcgagtcg aaagctcctt aaacatgatg gttcgcgccc tttgacgatc gcgcacaggg 1921 gcgaaatcat ggaggtgctt atgttcttta ccaaccgcaa tctcaaattc cgcggatgcg 1981 ccctgctttt gagcgcggcg gccgcgcagg ctactaccct tactgtaacc agcgcgagcg 2041 atagcggcgt cgggacgctg cggcagacaa atttcgtcag aatcactaag gaattggaag 2101 accagagggg ttgcacgtca tctcaataac cgtgtactgc ttccttagta tcgccagttc 2161 agcctgttga cgctccagaa tctcttgata gttgtgcggt gcatttcccc agcaccccgt 2221 cagcttatag aaataaatct cggttccggc accatcgacc agtcttccgt tcttgcagtc 2281 cgccttgagt tccgtcagtt tttgctcgac agtaactttt tcgacgagag tcccactatc 2341 ggtttggacg agcctggtag acactacatc ggtcggtttc acatattctg gtaaacacgc 2401 ttggaaatac tggactgtct cagcacagag gtcgaccgca acggtcaata ccagagagat 2461 aaccgcaggt gcaaactgca tcttactcca tttcttcaga agaccctcca ttgtagtaaa 2521 cgtcgtacat tttaccactt acgac //