LOCUS DF973705 260476 bp DNA linear CON 02-DEC-2021
DEFINITION Trifolium subterraneum DNA, scaffold: Tsud_sc00461.20.
ACCESSION DF973705 BCLP01000000
VERSION DF973705.1
DBLINK BioProject:PRJDB2012
Sequence Read Archive:DRR018263, DRR018264, DRR032035, DRR032036,
DRR032037, DRR032038, DRR032039, DRR032040, DRR032041, DRR032042,
DRR032043
BioSample:SAMD00004201
KEYWORDS WGS; IMPROVED_HIGH_QUALITY_DRAFT.
SOURCE Trifolium subterraneum
ORGANISM Trifolium subterraneum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae;
50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade;
Trifolieae; Trifolium.
REFERENCE 1 (bases 1 to 260476)
AUTHORS Isobe,S.
TITLE Direct Submission
JOURNAL Submitted (09-NOV-2015)
Contact:Sachiko Isobe
Kazusa DNA Research Institute, Dept. of Plant Genome and Genetics;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
REFERENCE 2
AUTHORS Hirakawa,H., Kaur,P., Shirasawa,K., Nichols,P., Nagano,S.,
Appels,R., Erskine,W. and Isobe,S.N.
TITLE Draft genome sequence of subterranean clover, a reference for
genus Trifolium
JOURNAL Sci Rep 6, 30358 (2016)
REMARK Publication Status: Online-Only
DOI:10.1038/srep30358
COMMENT URL:http://clovergarden.jp/
##Genome-Assembly-Data-START##
Assembly Method :: SOAPdenovo v. 2; Newbler v. 2.7; GAM-NGS;
SSPACE
Assembly Name :: TSUd_r1.1
Genome Coverage :: 552.8x
Sequencing Technology :: HiSeq1000; Hiseq2000; Miseq; Roche454
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..260476
/cultivar="Daliak"
/db_xref="taxon:3900"
/mol_type="genomic DNA"
/note="scaffold: Tsud_sc00461.20"
/organism="Trifolium subterraneum"
assembly_gap 274..742
/estimated_length=469
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 2591..2772
/estimated_length=182
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 3521..3801
/estimated_length=281
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS complement(join(4689..4826,4911..5174))
/codon_start=1
/locus_tag="TSUD_263730"
/note="Tsud_chr6.g05100.1.am.mk"
/product="hypothetical protein"
/protein_id="GAU38149.1"
/transl_table=1
/translation="MDDGYYDVISKSRASLICSRTLYLLEPRLVNLLNGGDVGFAKRP
TLYAIGDDLKVKPLSANFRLSYIKELSLPFDDLEVKVISIGEAEALRFLGAFLTSKFT
LTSGLQDFLNVPKLESTFSKVPEQESTFNGN"
CDS complement(8597..9073)
/codon_start=1
/locus_tag="TSUD_263740"
/note="Tsud_chr6.g05110.1.au"
/product="hypothetical protein"
/protein_id="GAU38150.1"
/transl_table=1
/translation="MSSTRKITLKSSDDETFEIDEAVALESQTIKHMIEDNCADDTGI
PIPNVTSKILAKVIEYCKKHVEVASSEEDKTRNEDDLKAWDLDFIKVDQATLFELILA
ANYLNIKNLLDLTCQTVADMIKGKTPEEIRTVFNIKNDFSPEEEEEVRRENQWAFE"
CDS complement(join(10280..10396,10612..10803))
/codon_start=1
/locus_tag="TSUD_263750"
/note="Tsud_chr6.g05120.1.am.mk"
/product="hypothetical protein"
/protein_id="GAU38151.1"
/transl_table=1
/translation="MDPRSSNRSKEGVVGFVKRERLYCVGDNLTVKPLSANSCLSYLK
ELGIALHDLEVKMISIGEAEALRLLGASLTSKFTLTGGLGDVPNQESTFLKVPKQEST
"
CDS complement(join(12149..12256,12341..12484))
/codon_start=1
/locus_tag="TSUD_263760"
/note="Tsud_chr6.g05130.1.am.mk"
/product="hypothetical protein"
/protein_id="GAU38152.1"
/transl_table=1
/translation="MKRPALYGVGDDLQVKPLSANFFLSHLKGLNFPFDDFDVKVISI
GEAEALRFLGAFLTSKFTLTSGLQDFLNVPKQEPTFKGN"
CDS 14288..14761
/codon_start=1
/locus_tag="TSUD_263770"
/note="Tsud_chr6.g05140.1.au"
/product="hypothetical protein"
/protein_id="GAU38153.1"
/transl_table=1
/translation="MSSTKKITLKCFDGETFDVEEAVALESQTIKHMIEDDCIDSGIP
LPNVTGKILAKVIEYCKKHVQGASSEEEKPLNEDALKAWDLDFVKVDQTTLFELILAA
NYLNIKSLLDLTCKAAADMIKDKSPEEVREIFHIENDFTPEEEADIRKENKWAFE"
CDS 18823..19161
/codon_start=1
/locus_tag="TSUD_263780"
/note="Tsud_chr6.g05150.1.au"
/product="hypothetical protein"
/protein_id="GAU38154.1"
/transl_table=1
/translation="MKFQSLVLFLLVLLVSMAKNQALPGGYTPIKNINDPYVIEIAQF
AVTEYNKRGHKLHFNKVISGESQVVAGINYRLKLSAYDSSPERSSPFVAIVYDSPQHI
RNLTSFSPVN"
CDS join(26489..26882,27627..>27895)
/codon_start=1
/locus_tag="TSUD_263790"
/note="Tsud_chr6.g05160.1.sm.mkhc"
/product="hypothetical protein"
/protein_id="GAU38155.1"
/transl_table=1
/translation="MRQILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVGDSDLQL
ERIDVYYNEASGGRFVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWA
KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP
DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRILKLS
NPS"
assembly_gap 31011..31311
/estimated_length=301
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS 33176..36553
/codon_start=1
/locus_tag="TSUD_263800"
/note="Tsud_chr6.g05170.1.au"
/product="hypothetical protein"
/protein_id="GAU38156.1"
/transl_table=1
/translation="MRITLVSFLSFILCFYCIFLCNQITAVSAKCLVDQQSLLVQLKN
NLTFNPESSTKLKVWNSSLDCCDWIGVDCDDKGYVVGLDLSEELISGGFDDASSLFGL
QQLQKLNLAANNFNSSIPSGFNKLVMLTYLNLSYANFVGQIPIEISQLTRLVTLDISS
LSYLLGQGLKLEKPNLQKFVQNLSSIRQLYLNGVSITAQGQEWCNALLSLHDLQELSM
SSCNLLGPLDSSLSKLENLSIIILDGNNFSSPVPETFSSFRNLTTLSLTSCGLTGTFP
NKIFQMGTLSFIDLTFNNNLHGSFPDFSSSGSLHTLRVSNTSFSGALPKSIGNMRNLL
ELDLSNCKLNGTLPNSLSKLSELSYLDLSFNSFTGPVPSFRMAKNLTHLDLSHNHISG
AIPSSSHFEGLHNLVNIDLRDNSINGHIPSSLFALALLQKIQLSSNRFSEFDKFIIVT
SSVINTLDLSSNNLSGSFPKSILQLGSLSVLDLSFNRLNGSLHLDELSELRNLTALDL
SYNNISIDVNVENTDHTSFPNISSLGLASCNLKFFPSFLRNKSRLVMLDLSRNQLKGT
VPNWIWKLQNLQSLNVSHNMLTDLEGPLQNLTSNLRELDLHNNQLRGSIPVFPIYASY
LDYSMNKFDSAIPQDIGNYLSFTTFLSLSNNNLLGNIPHSFCYALNLQVLDISNNIIS
GKIPSCLMEITQTLVVLNLRMNNLTGTIPDVFQPSCSLRTLDLQKNNLDGQIPDSLVK
CSALEVLNLANNNIIGRFPCLLKNISTIRVIVLRKNKFYGHIGCPNTNGTWHMLQIVD
LAFNNFSGELPGKCFTTWEAMKSDENHIDSMVNHIRFQVLQYDQVYYQDSVTVTTKGQ
QLELVKILTVFTTIDFSSNHFEGEIPKQLFDFKALYALNLSNNAFYGQIPSSIGNLKQ
LESLDLSHNLLEGEIPQELSTLSFLSFLNLSFNHLSGVIPIGTQIQSFQETSFIGNEK
LCGPPLTNICSSKNTSAPTKESVMKFDWQYISSGVGFGVGAGLVFAPLMIWERGRKWS
NDIIDKILMVVFPLFGLVYTPIGDDEEDDTKEDSNMTEDSDYNEEEDYWSNPRLYCVF
CSKFDNNKKKVIHDPNCTCFHSSQGSDLTNYSDSYSS"
CDS join(38714..39145,39478..39552)
/codon_start=1
/locus_tag="TSUD_263810"
/note="Tsud_chr6.g05180.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU38157.1"
/transl_table=1
/translation="MASDGSEEFRLVSPSIAKEGRMPRQYTDEGQGAKKNISPPLEWY
NLPKGTKTLAIVVEDIDAPDPDGPIVPWTHWVVVNIPATVKGLPEGFSGKEEMGGEYA
GIKEGNNDLKQPGWCCPKMPTHGHRLQFKLYALDDELHLGNKVTKEKTLDAIEGHVLG
EATLMATF"
CDS complement(join(43519..43530,44031..44267,44562..44662,
45017..45178,45446..46244))
/codon_start=1
/locus_tag="TSUD_263820"
/note="Tsud_chr6.g05190.1.au"
/product="hypothetical protein"
/protein_id="GAU38158.1"
/transl_table=1
/translation="MWNKTSTCCNWSGVTCDNEGHVISLDLSGEHILGGFNNSSSLFS
LAYLQKLNLDDNYFNSSIPSGFSKLEKLTYLNLSKAGFVGQIPTEISQLTRLVTLDLS
FISYSTKPQIPNLQKLVQNLTKIRKLYLDEISITSHGHQWSNALLPLRDLQELSMYNC
DLSGPLDSSLAKLENLSVIILDGNNFSSTVPKTFANFKNLTTLSLSDCGLNGTFPQKI
FQIETLTILDISFNLYLHGSFPEFPLSESIHTLSISFTSFSGEIPHTFGPFPMPISQL
HSLAIIDLSFNKFNDSLQVDSIFELRNLSALDLSHNNISINVNVDMFPTSCALSTLNF
HGNLLHGPIPQSLSHCSSLEDSVTVSTKGQQVNLVKILTIFTAIDFSSNYFEGPIPEV
LMDFKAIHVLNFSNNALSGEIPSTIGKLKQLESLDLSNNSLSVS"
assembly_gap 43599..44014
/estimated_length=416
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS complement(join(47026..47133,48334..49052,49183..49255,
49645..49811,50079..51066))
/codon_start=1
/locus_tag="TSUD_263830"
/note="Tsud_chr6.g05200.1.au"
/product="hypothetical protein"
/protein_id="GAU38159.1"
/transl_table=1
/translation="MRITLVSFLLSCCSIYITHTSPECLEDQQSLLLQLKNNFTFLDK
KPLYSPIIDEIISPSTKLRTWNKRTACCNWSGVTCDNDGHVISLDLSGEHIVGGFNNS
SSLFNLVHLQKLNLDDNNFNSSIPSGFSKLERLTYLNLSMAGFVGHIPMEISQLTRLV
TLDLSFISHSTKSQIPNLPKLVQNLTKIGKLYLDDISIISQGPEWSSALLPLRDLQEL
SMYNCDLSGPLDSSLAKLENLSVIILDGNNFSSPIPENFASLKHLTTLGLSDCGLNGT
FPQKMFQIETLRILDISFNLNLQGSFPEFALSGSIHTLLVSFTSFSGEIPRTIGHLPM
PIFQIRSLLVLWLSSNRLDGSLQLDAISELRNLIALSLSRNNLSLNVNLANIFELPWK
SLTWANSKVSIPLLIIRENKPWKNIQIVDIAFNNFNGKLQEKYFTTWEKMMHDEDHVV
PKFIQRSSIYLSYKDSVTVSTKGQQVELVKILTIFTAIDFSSNHFEGPIPEVLMDFKA
IHVLNFSNNALSGEIPSTIGNLKQLESLDLSNNSLVGEIPVQIASLSFLSYLNLSFNH
LVGKIPTGTQLQSFEASSFEGNDGLYGPPLTEKPDGKRQDLLPHPACGRLDCSNDQNF
LCVELGFVFGLGIIIGPIMFWKQWRFDNSSVASDLKVCASDAVSLGSDLLDSEFVDAV
ES"
assembly_gap 54098..54639
/estimated_length=542
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
misc_feature complement(join(63812..64998,65206..65312,65644..65734,
65896..66249,66660..66666))
/inference="ab initio prediction:Augustus:3.0.3"
/locus_tag="TSUD_263840"
/note="Tsud_chr6.g05210.1.au"
/note="putative frameshift mutation"
CDS complement(join(70280..70359,70967..71965,72682..73042))
/codon_start=1
/locus_tag="TSUD_263850"
/note="Tsud_chr6.g05220.1.au"
/product="hypothetical protein"
/protein_id="GAU38160.1"
/transl_table=1
/translation="MRITLLVSFLLCYCYCIYITHASPNSLCLEDQQSLLLQFRNNLA
FDPEYSFRPLEWNKSAVCCSWSGVTCDKDGHIIGLDLSYVIISGGINSSSSLFSLQHL
QILYLSGINFNSSIPSGFRLVQNLIISSNLDVLDLRNNQLLGSIPQDIGSYLSSTIFL
SLSNNNLHGSIPDSLCKASKLRVLDISVNNISGTISPCLMTMTGTLEVLNFGKNNLTG
LIPDMFPIDCVVSTLNFHGNLLHGPIPNSLSNCSSIEVFDIGSNQIVGGFPCFLLNIP
AFGVLVLRNNKFHGSIECSHSQTNEHWKMIQIVDIAFNSFNGKLPEKYFTTWDRMIHN
EDDSPKMYYEDSVTVSTKGQQLEFVKILTILTVIDFSSNHFEGPIPEVLMDLKGIRVL
NLSNNALYGEIPSTIGNLQQLESLDLSNNSLVGEIPVQIASLSFLSYLNLSMNHLVGM
IPTGETFFVLEPLEYFVMESLKLGGLGGL"
misc_feature complement(join(75890..76452,76963..77986))
/inference="ab initio prediction:Augustus:3.0.3"
/locus_tag="TSUD_263860"
/note="Tsud_chr6.g05230.1.au"
/note="putative frameshift mutation"
assembly_gap 78157..78575
/estimated_length=419
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 79816..80598
/estimated_length=783
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS complement(81766..82683)
/codon_start=1
/locus_tag="TSUD_263870"
/note="Tsud_chr6.g05240.1.au"
/product="hypothetical protein"
/protein_id="GAU38161.1"
/transl_table=1
/translation="MTMSKYFMVLNLRSNNLQGPIPDKFLASCGLQTFNLNGNLLHGK
VPKSLAHCSKLEVLDIGTNQIDGHFPCFLQNLPTLSVLVLRNNKFHGTLGCSKAKNPW
KMVQIVDIAFNNFSGKLPEKYFRTLKKMKDDDDNAEPDIIQSAINNVYYQDSVTVMSK
GQQMELIKIRRIFTAIDFSSNHFKGQIPEDLMDLKALYILNFSNNAFSGEIPSTIGNL
TQLESLDLSNNSLVGEIPTQLSSLSFLSYLNLSFNHLVGKIPTGTQLQSFEASSFEGN
YGLYGPPLTEIPKRPNDPPSCIHNQHLEG"
CDS complement(join(92505..92898,92981..93879))
/codon_start=1
/locus_tag="TSUD_263880"
/note="Tsud_chr6.g05250.1.au"
/product="hypothetical protein"
/protein_id="GAU38162.1"
/transl_table=1
/translation="MTKNLMVLNLRRNRLQGPIPDKFSASCALRTLNLNGNLLHGKVP
NSLAHCSKLEVLDIGTNQIDGRFPCFLQNLPTLSVLVLRNNKFHGTLGCSKAKNPWKI
IQIVDIAFNNFSGKLPENYFRTLKKMKDDDHNAEPDIIQSAINNVYYQDSVTVMSKGQ
QMELIKIRRIFTAIDFSSNHFKGQIPEDLMDLKALYILNFSNNAFSGEIPSTIGNLTQ
LESLDLSNNSLVGEIPTQLASLSFLSYLNLSFNHLVGKIPTGTQLQSFEASSFEGNYG
LYGPPLTEIPKRPNDPPPQPACGSLSFLSYLNLSFNHLVGKIPTGTQLQSFEASSFEG
NYGLYGPPLTEIPKRPNDPPPQPACGRLACSIDWSFLSVELGFVIGLGIIIGPIMFWK
KWRVRYWKRVDKILCWMFSRMYLEYATDRGQTYTVLRW"
assembly_gap 94798..95111
/estimated_length=314
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 96467..96668
/estimated_length=202
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS complement(99197..101617)
/codon_start=1
/locus_tag="TSUD_263890"
/note="Tsud_chr6.g05260.1.au"
/product="hypothetical protein"
/protein_id="GAU38163.1"
/transl_table=1
/translation="MRITLLVSFLLCFYYCIYITHATPKCLEDQQTLLLQFKNNLTFD
PETSIKLSVWYNTTDCCQWVDSVICDNEGHVIALYLDNELISGGFNNSSSLFSLQHLQ
KLDLSYNNFNSSFPSGFTKLAKLTTLELTNCHFYGTLPNSISNLTYLTYLKLSDNDLS
GAIPSSLFTLPSLEEIYLDNNQFSKLDEFFNVSSFLLRNLDLRNNYISGPFPISIFQL
KSLSELDLSFNKFNGSLHLYKFLELRNLTTLDISYNNLFLYGNPKNVDPSSFPAFSSL
MLASCNLKIFPDFLINQSTLETLDLSDNKIQGVLPNWIWKLEGLLELNISHNFFTELE
GPLTNLTSILMYRVDIHHNLLQGPLPAFSDRARYLDYSINRFSSAIPQDIRNHLSLAF
FLSLAHNNLHGSIPDSLCGFRDFQLLDLSFNNFSGTIPSCLMTMTGTIKVLNLGRNNL
QGPIPDTFSDSCTLQTLNLNGNLLHGPVPKSLARCSELEVLDIGKNQFDGHFPCFLQN
IPTLSVLVLRNNKFYGTLRCSNSKNPWNMIQIMDIAFNNFCGKLPGKYFRTMKKMWHD
NHNVGLSFIQLDSDELHYQDSVTVVSKGQQFELVKILTIFTTIDFSSNHFQGVIPKDL
IELKALYVLNFSNNAFSGKIPSTIGNLKQLESLDLSNNSLVGEIPLQLASLSFLSYLN
LSFNHLVGKIPTGTQIQSFQASSFEANYGLYGPPLTETPNGTRQDELHPQPASGRLAS
SIDWSFLSVELGFVFGLGIIITPVMLWKQWRVKYWKLVDKILCWMLSRMYLEYATDRG
QTYTVLRW"
assembly_gap 105318..106991
/estimated_length=1674
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS 116897..117136
/codon_start=1
/locus_tag="TSUD_263900"
/note="Tsud_chr6.g05270.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU38164.1"
/transl_table=1
/translation="MRGTDKLRMDKCCSRLGADRLLKELYMQKGSYATVMHFALFSFL
PSTGHHCWCLALRVFFACVFCWRKVAWQHTWPDRL"
assembly_gap 122047..122283
/estimated_length=237
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS join(130948..131119,132300..132601,132693..132839,
133295..133327,133824..134030)
/codon_start=1
/locus_tag="TSUD_263910"
/note="Tsud_chr6.g05280.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU38165.1"
/transl_table=1
/translation="MDNVSDTAGVSPPPTQSVEISPDTQSETDAVGGSTIKIIVNYNS
SHHEIHLPAQSTFGDVKKLLIPKIGLEPEQQRLFFRGLEKDDKEKLHLGGVKDKSKIF
LMEHADSKEKKFEEKRKLDEMAKEKKLEEKRKLDEMSKATKAITLVKAEVHKLSDRVA
ALEAAINAGNKTSEKEFLVLTELLMSQLLKLDGIEAEGEAKLQRKAEDGVGKETVVGH
VRRVQGIVDKLDSLKAINSNPFIQSGNAATGTTHWETFDTGKEGSNGDPSTTTTSSGT
KISQDWERFD"
CDS join(135948..136172,136731..136760)
/codon_start=1
/locus_tag="TSUD_263920"
/note="Tsud_chr6.g05290.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU38166.1"
/transl_table=1
/translation="MLLNPKNPCESLCMKLFLNVDDTEISSKFFVCDSCYKFTTFQNL
DCTCGKPTNRQPKNLDSEGQVNGGSVDALNGGLFDLALDL"
CDS join(138191..138340,138791..138952)
/codon_start=1
/locus_tag="TSUD_263930"
/note="Tsud_chr6.g05300.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU38167.1"
/transl_table=1
/translation="MGGVISKIMGSIYKARLLTALDPKFPNKSKEGVVGFVKRPALYG
VSDDLKALNLLAASLTSEFTLTSGLEDFFIVPKQESNLTSKYIQTSRLDELAKEPIPE
A"
CDS join(139735..139924,140459..140604,141722..141919)
/codon_start=1
/locus_tag="TSUD_263940"
/note="Tsud_chr6.g05310.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU38168.1"
/transl_table=1
/translation="MNTTLSPSPSPTTFVSPRFSKNYSSFSNILVPSSSKPISIQLPT
SKRGFQTTGIRCNSSFFPGGDGDSSSKNVLDAFFLGKALAETLNERIESTVGELLSTV
GRLQAEQQRQEEVLDKAKKAKEKAAREAAEAQPQGLVTADIVVVDSGTSYSSTDPVTT
VQPTDASETDTDPTLSS"
CDS complement(142520..142990)
/codon_start=1
/locus_tag="TSUD_263950"
/note="Tsud_chr6.g05320.1.au"
/product="hypothetical protein"
/protein_id="GAU38169.1"
/transl_table=1
/translation="MSSTEKITLRSSDGEVYEIDVAVALESLTIKHIIETNCTDEGGI
FVPNVTSKILAKIIKYCKKHVEAERPCSYSYEDDLKVWDTDFVKVDKDTLFDLILAAK
ELNIKSLLELTCEAVANMTKGMKPVKIRKFFSIKKAYTPEEEDEVRRENQWAFE"
CDS complement(join(144063..144092,144274..144360,
144992..145066,145416..145520,145630..145728,
145816..145949,146122..146200,146309..146527,
148161..148244))
/codon_start=1
/locus_tag="TSUD_263960"
/note="Tsud_chr6.g05330.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU38170.1"
/transl_table=1
/translation="MVADSNSKSDLSFGRIFASSAFSACFAEVCTIPLDTAKVRLQLQ
KQAVAGDVSSLPKYKGMLGTVGTIAREEGLSALWKGIVPGLHRQCLYGGLRIGLYEPV
KTFYTGKDHVGDVPLSKKIVAAFTTGAVAITIANPTDLVKVRLQTEGKLPPGVPRRYS
GSLNAYSSIVRQEGVGALWTGLGPNIARNGIINAAELASYDQVKQTILKIPGFTDNVV
THLFAGLGAGFFAVCIGSPVDVVKSRMMGDSSYKSTLDCFVKTLKNDGPLAFYKGFLP
NFGRLGSWNVIMFLTLEQTKKFVKSLE"
CDS complement(join(149320..149469,149696..149836,
151081..151360,151439..151533))
/codon_start=1
/locus_tag="TSUD_263970"
/note="Tsud_chr6.g05340.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU38171.1"
/transl_table=1
/translation="MTQMMKNSIPWPTIMVVISWYSSNIGVLLMNNYVGIYVMDIVPL
QSVQSKNQLFKICGLSVVFCFSVVCGNISLNYIPVSFNQAIGATTPFFTAVFAYFVSR
KREAWVTYGTLLPVVTGVIIASGRKIRFNEPAALYGTYSNDGVTSCNIVDGGKRASDD
NRTCQRGFQNYLVLGNAKGAVAVVISILIFQNPISMIGMLGYVLTIIGVILYSETKKR
YST"
CDS complement(join(155486..156004,156105..156326))
/codon_start=1
/locus_tag="TSUD_263980"
/note="Tsud_chr6.g05350.1.am.mk"
/product="hypothetical protein"
/protein_id="GAU38172.1"
/transl_table=1
/translation="MNAVNENDGVVGNWYTSIVHQISIYGVAAGYCLSASLLSIINKW
AVMKFPFPGALTALQYFTSAAGVLLCGWLKHVVTTIELNTWGLVLYNNIEALLLFPLE
LLIMGELKKIQHEITDESDWHSFPVILPVALSCLFGLAISFFGFSCRRAISATGFTVL
GIVNKLLTVMINLVIWDKHSTWVGTVGLLICMLGGVMYQQSTSKPKDAKQVTVEEKEE
EQLKLLEMQANSETDISDIEVNKSREGN"
CDS complement(join(158813..159436,159545..159664,
160065..160322,160813..161457))
/codon_start=1
/locus_tag="TSUD_263990"
/note="Tsud_chr6.g05360.1.sm.mkhc"
/product="hypothetical protein"
/protein_id="GAU38173.1"
/transl_table=1
/translation="MGCFTILKRNKKKSDQIAYVKRVSPGEDSPTVLPEPQAPTRSLQ
SAPPSFKMRVKPIQPTNKVTNNRSTRIRALSAPSALDEAEQDALASIEYEGQEDSKYR
TGSWKEQRTSSPQPLPLPSPKGFSTLKTVGSFKSGTAISPLYASGPLPLPPTGSLRNF
SYDELAAACLNFSSDRYMSESLSSTIYKASFGDDTSTSSSKKFEATVTRLRPSPQGLK
EFISEVNTLASLEHPNLCRLLGFHARDGSEHRMLVYERLYHGSLDRLLYGKSDGPSID
WSTRMKIAICAALGLSFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHVPKE
EISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVK
WSRPFLSDDHRLSMIMDPQLKGRFPSKAASTIANIAQRCLQMEPSERPTMGSVVEHLK
KIQDLKHSSRFPLQEPAQMSRSPSLNGIILPPPRSSFSPSPSSRALVSVSPPRWSGVS
IQLPPRAFSSTLYLEELDRQESRKLSASASASRKASVEGF"
CDS join(165228..166823,166944..167642)
/codon_start=1
/locus_tag="TSUD_264000"
/note="Tsud_chr6.g05370.1.au"
/product="hypothetical protein"
/protein_id="GAU38174.1"
/transl_table=1
/translation="MEGVTTPFSMEEVRGVVEESDGNKSPGPDGFNFAFLKGAWEVIS
GDVMAFMHEFHVNARLPKALSSYFIALIPKSFNPQALGDFRPISLLGSMYKLVAKVLT
KRLCLVMDSLVSKNQSAFIKGRLLVDDVLVINEIVDWVKKAKVKCEIFKVDFEKAYDS
VSWSYLDYMLRRYGFDEKWRSSVRACVFAGSLSVLVNGCPTEQIDICKGLKQGDPLAP
FLFILVAEGLGALMNKAVELGFYKGIQLRSCGVNISHLQYADDTLFVGEVCVENLWTT
KAILRWFELISGLKVNFFKSKLFGINVEDDFLSSAAAFLKCNVERLPFIYLGLPVGAN
PRRMATWNPVLEVLQKRLASWKNKYVSLGGRVVLLNSVLAAIPIFYLSLFKMPVGVWK
KIVRLQRKFLWGGVASTSKISWVNWRDVCRPNNEGGLGVKDLRIMNISLLTKWKWRLL
SEGNSIWKFVLRDRYGGGESGVSWMSRSLPTNKVSPWWNDLMVVGLVGGVERLQHFFF
KKIGNGDETSFWHDVWVGTQPLKEEEELCDMLLNILLPIQLSHTKDEWRCQHSNGGLF
SVRALYCYLAGIIVPPIVLDLELVTDLGFVWKSFAPSKVIVFSWQLLLRRLPTKKNLF
KRGILSDDSKKICVLCPMNIECEGHLFGWCDFASTLWRKFFIWFGWDGAVPRDPLEIF
QKFRKTTGIGKRLKGLLAVWHVVVWAIWKVRNNVIFNSIVPVVEDVFQRIITLSWKWL
REKKMGGSCSLYEWKTYPLDCILR"
CDS complement(join(171021..171172,171812..172133))
/codon_start=1
/locus_tag="TSUD_264010"
/note="Tsud_chr6.g05380.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU38175.1"
/transl_table=1
/translation="MVCEDLPKEVCTFSIASSGKRCLLETEKSVNGEIEYQCRTSEVV
VERMAEYIETDQCIEACGVDRSTVGISSDAFFEPQFTGKLCSPACYEKCPNIVDLFFN
LAAGEGVYLPDLCEKHKTNPRRAMVELVSSGAAFGPTSSVSEDIVAAPASAPSSL"
CDS complement(join(<179243..179301,179382..180098,
180208..180435,181062..181308,181529..181702))
/codon_start=1
/locus_tag="TSUD_264020"
/note="Tsud_chr6.g05390.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU38176.1"
/transl_table=1
/translation="MAKQSKSKKPESFGKGKVTPIQIAFIVDRYLCDNNFTETRKSFR
IEASSFIANSPINEVPKSLMSLGEMLDEYICLKEQKVMLDQERVYMEQEKNRVQMFLN
GVQNVMNVYNASKNISLTNAPVPNANAKSAAVPPQSKLGASATAAAATATQNTSTTLS
VPQSNITNAENGNFSTPMISVSNRKRKDTSTTVDAPSIAKRSRGRSSTTSRKIPVKGQ
NTLPQSNRSVNQVVYHPSSATQSSALNCVPSGSQVQGSSVVKCLFNQPQTSIPKVPKT
PPRTNSSHSDTNLSPPEVTQVAPSNVETESTCYTVISTKRVMVSPAKQMAYIESSHCI
SPVKINSDKASKRDHVRSRLNFDSSVVPQTHSLESDNSLPNETSTPESNNEVHLYDID
FPNFDAFGTDFSFAEMLNDLDFSCEGIEFSCEPGSINSNGIQVISELPSTSVEALSEK
DMNIKGSDRLTATNSVTRSITILSP"
CDS join(184012..184416,185371..185549,186431..186788,
186910..186990)
/codon_start=1
/locus_tag="TSUD_264030"
/note="Tsud_chr6.g05400.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU38177.1"
/transl_table=1
/translation="MKGVLTLQLWNPPPRFHTLSFSNHPLSISASLTTTATSSTQQPP
QDFLTAKERRRLRNERRESKNTTNWKEEVEDKLIMKTKKVRKHWMDELNLDNLINLGP
QWWGVRVARSKGQYTAEALARSLAKFFPDMEFKVYAPAIYEKKKLKDGSISVKPKPLF
PGNIFLRCVLNKPLHDFIKEYDGVHGFTGATVGNTKKQINKPKPIDEVDMEAIFREAK
VEQENADKAFEEEQKNAAVISLNPKSKLDSDVSKAIVDSKPKRGSRKTSNQLTVTEEA
SPAKKGPKLATGSTVRIISGTFLGFAGTLKKLSRKTKMATVHLTIFGKENIVDLDISE
IVPETN"
CDS join(190340..191396,191647..191702,191789..191839)
/codon_start=1
/locus_tag="TSUD_264050"
/note="Tsud_chr6.g05420.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU38178.1"
/transl_table=1
/translation="MASFTTTLYFKSLIFIILFIKVLSFDPIPLFSFADFEKDLKFKS
NVAIFGNAKIVNGESKIQFFGSRSSSGETGRVIYKKPIKLFQGKPKQLVSFSTYFTFS
ISLENGGGLAFVMIPNGVNGVKDEIFNQSSSGFSLGLKNNDFEVISVEFGAYKDGKNE
ILIRNGVSSKAYFTNLKLKSGEKLHTWIDYEANSRRLEVRLSKHGNSKPFDPLLWHKI
DISNVLKEEEMFVGFSPMKGKNAYLYSWSFVMRQFPPHSMHSEPLDPKVFAKNSETSM
VIKPNGKKKNDCVLRVLAAMIFGTGCGALAAFTVLYLWTIFGNKRAAVVPEGCVMQSL
DVDYRKVKIVVDNKTIGDVLSKLAPWSQPNVANASAQLAKLRAPLQHKLQTTT"
CDS 190340..191407
/codon_start=1
/locus_tag="TSUD_264040"
/note="Tsud_chr6.g05410.1.au"
/product="hypothetical protein"
/protein_id="GAU38179.1"
/transl_table=1
/translation="MASFTTTLYFKSLIFIILFIKVLSFDPIPLFSFADFEKDLKFKS
NVAIFGNAKIVNGESKIQFFGSRSSSGETGRVIYKKPIKLFQGKPKQLVSFSTYFTFS
ISLENGGGLAFVMIPNGVNGVKDEIFNQSSSGFSLGLKNNDFEVISVEFGAYKDGKNE
ILIRNGVSSKAYFTNLKLKSGEKLHTWIDYEANSRRLEVRLSKHGNSKPFDPLLWHKI
DISNVLKEEEMFVGFSPMKGKNAYLYSWSFVMRQFPPHSMHSEPLDPKVFAKNSETSM
VIKPNGKKKNDCVLRVLAAMIFGTGCGALAAFTVLYLWTIFGNKRAAVVPEGCVMQSL
DVDYRKVKIVVDNKTIGDGNK"
CDS complement(join(<194371..194639,195007..195400))
/codon_start=1
/locus_tag="TSUD_264060"
/note="Tsud_chr6.g05430.1.sm.mkhc"
/product="hypothetical protein"
/protein_id="GAU38180.1"
/transl_table=1
/translation="MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYAGDSDLQL
ERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQTFRPDNFVFGQSGAGNNWA
KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP
DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT
TPS"
CDS complement(join(201100..201125,202082..202351,
202849..203242))
/codon_start=1
/locus_tag="TSUD_264070"
/note="Tsud_chr6.g05440.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU38181.1"
/transl_table=1
/translation="MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGKYSGDSDLQL
ERINVYYNEASGGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWA
KGHYTEGAELIDSVLDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP
DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT
TPSLGKGSIFV"
CDS 207705..208082
/codon_start=1
/locus_tag="TSUD_264080"
/note="Tsud_chr6.g05450.1.sm.mk"
/product="hypothetical protein"
/protein_id="GAU38182.1"
/transl_table=1
/translation="MTSPVITQEKTSEKIAMTVPVVTNEKNKMVTMQFTLPSMYEKVE
QVPKPIDERVVIREVGGRKYGVVKFGGVASDEVVKEKVEKLKLSLEKDGFKIVGDFLL
GRYNPPRITIPMFRTNEVMIPVE"
CDS 210947..211237
/codon_start=1
/locus_tag="TSUD_264090"
/note="Tsud_chr6.g05460.1.am.mk"
/product="hypothetical protein"
/protein_id="GAU38183.1"
/transl_table=1
/translation="MVTMQFILPASYAKAEEAPKPIDERVVIREEGERKYGVVKFGGV
ASDEVVKEKVEKLKLSLERDGFKVVGDFLLGRYNPPWTIPMFRTNEVMIPVE"
CDS complement(211732..211965)
/codon_start=1
/locus_tag="TSUD_264100"
/note="Tsud_chr6.g05470.1.am.mk"
/product="hypothetical protein"
/protein_id="GAU38184.1"
/transl_table=1
/translation="MGFWTLLEGLLLFANALAILNEDRFLARRGWTLAEMTGPQRSSL
KGQVIGLIYACQFLRLPLILFNIIIIIVKLFTG"
CDS join(215998..216696,218114..218806)
/codon_start=1
/locus_tag="TSUD_264110"
/note="Tsud_chr6.g05480.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU38185.1"
/transl_table=1
/translation="MSSSSILHHHLLLLPNSLQKPQKTLSKFNTTTTSKRHIKTPKVS
STTTESQSTTSKRRNIKSNQPQNDITEPQNEESDLEDYDDGIDFPYQEPPLVCCFGAA
QREFLPTVRVQEFPMHPDIYSEWKMLQWKPPEFARAPGGPPSNVAVAHVRLGGRAALL
GKVGDDEFGEDIVLGLNKEKVQTRGVKFDSGFRTGCSYMKLKFEDGKMKMETVRESAE
DSLRIDELNLAVLKEARVFHFNSEVLTSPSMESTLYKAIKWFKKFGGLVFFDLNLPLP
LWRSRDETREIIRKSWEEADIIEVSRTELEFLLDEEHYMRKRNYRPQYYAEDYEHTKN
RQEYYHYTAEEIAPLWHDKLKFLFVTDGTLRIHYYTPSFDGVVVGTEDVLITPYTCDR
TGSGDAIVAAIMRKLTTCPEMFDNQDVLDRQLRFVVAAGIISQWTIGAVRGFPTENAA
QNLKEQVWVPSMW"
CDS complement(join(219549..220463,220714..220875))
/codon_start=1
/locus_tag="TSUD_264120"
/note="Tsud_chr6.g05490.1.au"
/product="hypothetical protein"
/protein_id="GAU38186.1"
/transl_table=1
/translation="MTETLKVLNLRRNHLQGPIPDKFPASCYLRTMNLHGNLLHGPVP
KSLAHCSKLETFISFDFIGYYYKDSVTVMSKGQPMELVKILTIFTTIDFSSNHFEGQI
PEDLMDLKALYILNFSNNAISGKIPSTIGNLRQQESLDLSNNSLVGEIPMQLASLSFL
SYLNLSFNHLVGKIPTGTQLQSFQASSFEANYGLYGPPLTETPNGTRPENKLPPQPTC
GRLSCSIDWNFXLNLSFNHLVGKIPTGTQLQSFQASSFEANYGLYGPPLTETPNGTRP
ENKLPPQPTCGRLSCSIDWNFLSVELGFVFGIGIIISPIMFWKQWRVRYWKLVDKILC
WMFSRMYLEYATDRGQTYTVLRRC"
assembly_gap 225006..226282
/estimated_length=1277
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 226483..227561
/estimated_length=1079
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS complement(join(227675..227902,228016..228375,
229692..230111))
/codon_start=1
/locus_tag="TSUD_264130"
/note="Tsud_chr6.g05500.1.au"
/product="hypothetical protein"
/protein_id="GAU38187.1"
/transl_table=1
/translation="MTDEVGRQRGGRKSRAHSSARREATLGPSKRKVNVASTSGAQLQ
EPEAEHPEPQPMAEEEGQDDVEAQEDDDREDGEDQNDEVDPPSAPKQTKRNRRTTSSK
NPPKPKEPQVTEFGGGPSDLSLLPSFGGHVAAALWRGEEEFDKMKGAHVSFAKLLEIY
HDNLNLALAAEDNEDEEEETVEFLRDCTVRAFLLYLIGGTLFTNKSAQYMDLIFLSYL
QDIPLINTWNWGASGLAYMYNYLDRASRRRCGNHGGYNCMFQAWVFAHFKRYGQRFLD
ENYTNEEPVGAKYYPLKTGKWPYETRTSLDRMEVDEVTFCPYEDHRQFRPFQDISWYS
G"
assembly_gap 228390..229177
/estimated_length=788
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CDS complement(join(236872..237121,237403..238211,
238412..238517,238630..238718,239334..239404,
239503..239575,240863..241030,241238..241462))
/codon_start=1
/locus_tag="TSUD_264140"
/note="Tsud_chr6.g05510.1.am.mkhc"
/product="hypothetical protein"
/protein_id="GAU38188.1"
/transl_table=1
/translation="MSSGGPTTTSSNTSPRVTTGPTTTRRRVADNNNNDTEKQQQQQQ
NQNIPQSFSDFSELEQDDTVSSLNPIHHHAHVSFIGAGVEMNGKSIENGQLILQRFKE
DWASAQRVVTENNDQVETSMPKRVLERLATPEIWMKPNSDNYYQCVSRNRNQMRPKSK
TNGYLLVHANGGLNQMRTGICDMVAVAKIMNATLVLPSLDHDSFWTDPSDFKDIFDWR
HFMKVLKDDIDIIEYLPVRYASIKPLASYYRSEILPLLKRHKVVQFTHTDSRLANNGL
ASSIQKLRCRANYQALKYTVEIEELGKTLVDRLRNNDEPFIALHLRYYLIDLRICLVL
ENVFRVLFVFLTFFFLYVQCRYEKDMLAFTGCSHNLTKAEAEELRVMRYEVKHWKEKE
IDSVERRLQGGCPMSPREAAIFLKAMGYPSTTTIYIVAGPIYGSNSMAAFRAEYPNVF
THSTLATEEELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRK
TINPDRSNFVRLIDNLDMGSISWEAFSSEVKNLHSNRLGAPYLRQVGESPRIEENFFA
NPFPGCVCNKSQEQITSQKLDQRFGIGAQK"
CDS complement(join(251579..251740,252148..252339))
/codon_start=1
/locus_tag="TSUD_264150"
/note="Tsud_chr6.g05520.1.am.mk"
/product="hypothetical protein"
/protein_id="GAU38189.1"
/transl_table=1
/translation="MDPRSPNKSKKDVVGFVKRPALYGVGDDLKVKSLSASSCLSYVK
ELSLPLDDLEVKVISIGEAEALSLLAASLTSKSTLTSGLEDFFNVPKQDSNLTSKYIQ
TSRLDVLAKKPKLED"
CDS complement(256518..257120)
/codon_start=1
/locus_tag="TSUD_264160"
/note="Tsud_chr6.g05530.1.am.mk"
/product="hypothetical protein"
/protein_id="GAU38190.1"
/transl_table=1
/translation="MSLKEEMIFDHDVEGSQLQELDLFKSPQLQLETPGTEITMNNND
QTSSSVVNPRPRGRPLGSKNKLKIPIVETHVNRNVLSSHVLEITHGVDLSTSLMHYAR
HHGQSICILNGNGLVENIKLRQPTGKIFNYMGRFKILLISGTILPSEENAGDLTILLS
DTNEQEIGGSVVPPLMASGTVKLTVASFANTTFEKLPSVE"
CDS complement(258562..259776)
/codon_start=1
/locus_tag="TSUD_264170"
/note="Tsud_chr6.g05540.1.au"
/product="hypothetical protein"
/protein_id="GAU38191.1"
/transl_table=1
/translation="MDLSQFQSHRPPPNALSSRKIVPNDLMIKAFSCLPVKSLMRLSC
MSKFYNSLISNPFFIKMHLRQSSRNPHLAIVSKQVFPCVRFIVPMSKILENTRINFPF
YQLPCPLSDTEHCWLVGSCNGLLCYAYYSNDTRNYYQHSWLKFYNPATKVESKELAFI
EDHFNDSYFYTRYIFGYDILTDMYKVVALHLIGDGKTVMRTVVRVFTLGDHAWRIIES
FLVAPLRLDFPSSESSGVYFNGYVYWLALKNCVHANMCYETNGITIDQFVIMSLDLGT
ETHMQLLPPEGFDEVPHVDPIIRVLNDSLCFCHDFQQTHFVIWKMEKFGVVGSWTQLF
KISYDLNILSIFSWLPLHISENNNTVMLANRQGYSAMIYNFEEDSVEILSNYKALWTF
SKDHVESLVSIC"
CONTIG join(BCLP01018083.1:1..273,gap(469),BCLP01018084.1:1..1848,gap(182)
,BCLP01018085.1:1..748,gap(281),BCLP01018086.1:1..27209,gap(301),
BCLP01018087.1:1..12287,gap(416),BCLP01018088.1:1..10083,gap(542),
BCLP01018089.1:1..23517,gap(419),BCLP01018090.1:1..1240,gap(783),
BCLP01018091.1:1..14199,gap(314),BCLP01018092.1:1..1355,gap(202),
BCLP01018093.1:1..8649,gap(1674),BCLP01018094.1:1..15055,gap(237),
BCLP01018095.1:1..102722,gap(1277),BCLP01018096.1:1..200,gap(1079),
BCLP01018097.1:1..828,gap(788),BCLP01018098.1:1..31299)
//