LOCUS DF973247 668249 bp DNA linear CON 02-DEC-2021 DEFINITION Trifolium subterraneum DNA, scaffold: Tsud_sc00085.00. ACCESSION DF973247 BCLP01000000 VERSION DF973247.1 DBLINK BioProject:PRJDB2012 Sequence Read Archive:DRR018263, DRR018264, DRR032035, DRR032036, DRR032037, DRR032038, DRR032039, DRR032040, DRR032041, DRR032042, DRR032043 BioSample:SAMD00004201 KEYWORDS WGS; IMPROVED_HIGH_QUALITY_DRAFT. SOURCE Trifolium subterraneum ORGANISM Trifolium subterraneum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium. REFERENCE 1 (bases 1 to 668249) AUTHORS Isobe,S. TITLE Direct Submission JOURNAL Submitted (09-NOV-2015) to the DDBJ/EMBL/GenBank databases. Contact:Sachiko Isobe Kazusa DNA Research Institute, Dept. of Plant Genome and Genetics; 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan REFERENCE 2 AUTHORS Hirakawa,H., Kaur,P., Shirasawa,K., Nichols,P., Nagano,S., Appels,R., Erskine,W. and Isobe,S.N. TITLE Draft genome sequence of subterranean clover, a reference for genus Trifolium JOURNAL Sci Rep 6, 30358 (2016) REMARK Publication Status: Online-Only DOI:10.1038/srep30358 COMMENT URL:http://clovergarden.jp/ ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2; Newbler v. 2.7; GAM-NGS; SSPACE Assembly Name :: TSUd_r1.1 Genome Coverage :: 552.8x Sequencing Technology :: HiSeq1000; Hiseq2000; Miseq; Roche454 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..668249 /cultivar="Daliak" /db_xref="taxon:3900" /mol_type="genomic DNA" /note="scaffold: Tsud_sc00085.00" /organism="Trifolium subterraneum" CDS complement(join(1797..1899,2176..2243)) /codon_start=1 /locus_tag="TSUD_122850" /note="Tsud_chr3.g07650.1.am.mk" /product="hypothetical protein" /protein_id="GAU22399.1" /transl_table=1 /translation="MLPIQHQSEDYDYDDRVTYLDSLCSDCDCCGGVEKSGWWSGDVQ CGVEKAQRRREL" CDS complement(join(7427..7441,7540..7774,8096..8295)) /codon_start=1 /locus_tag="TSUD_122860" /note="Tsud_chr3.g07660.1.am.mk" /product="hypothetical protein" /protein_id="GAU22400.1" /transl_table=1 /translation="MSMNAFPVKELEGESPNWLELPTDITTNILQRLSTIDIVTSACQ VCPLWWNICKDPLMWRTVDMTSCAGSHIQRLRLEECNEISDKGFIECVMKLSKLEELK ITYNEQLSSHSIAVVARCCLHLKSLEYGRNVDDKYVEADINDEMSSS" CDS complement(join(12377..12746,12858..12929,13790..13881)) /codon_start=1 /locus_tag="TSUD_122870" /note="Tsud_chr3.g07670.1.am.mk" /product="hypothetical protein" /protein_id="GAU22401.1" /transl_table=1 /translation="MMATSSISATEMEIERTTDQPNWLELSKDVTCGQLEDIAFEFYV TDNLLAYIADCSGHLRCMRLVQCARLSEKGFRDVIKKLSFLEELEILFNHQLSEETFE LIGQCCPLLKSLEYARLVNRYQILGINDEAFAIAKTMPRLLHLKISGNVLNNDGILAI LDGCPLLESLDLTRYGC" CDS complement(19823..20323) /codon_start=1 /locus_tag="TSUD_122880" /note="Tsud_chr3.g07680.1.am.mk" /product="hypothetical protein" /protein_id="GAU22402.1" /transl_table=1 /translation="MRLVDCQDISDNGFNEAVRKLSRLEELDISLCNLTKYSIEVIGL SCPLLKSFTFERDWSAYILGADDEALVISETMPRLSRLDIKGNKLTNDGLLAILDRCP LLEYLDIQGCYNLNLTESLKKRCIEQIKHLRLPILSNYEDFVDYDDGVTYRDSILDDD LYDPYD" CDS complement(join(22195..22783,22875..22946,24559..25049, 25350..25358)) /codon_start=1 /locus_tag="TSUD_122900" /note="Tsud_chr3.g07700.1.am.mk" /product="hypothetical protein" /protein_id="GAU22403.1" /transl_table=1 /translation="MQLRISDDGFSEAVRKLPQLQEVDISFCNLSKDSLEILGQSCPL LKSLKFAKTGVEYTEYDEDDEAIVIAKTMPGLRRLIIVKNYLTDVGLIAILDGCPLLE TLHLEECCGLSLSESLWNRCFKQIKDFQPLNVHIDYDSDGYVSNFNSLSDDDDDYIYD ILWPQFCCGHLEDIDIQFFGFNDVLQCIAMNANNLPCMRLVYCWRISDEGISAAVRNL PLLEEVDISLNMLNEDSLEALGRCCPRLKSVTFARMLCEHFGYGSENIVAFVIAETMP GLRHLNIEANKLTNNGLVAILDACPLLESLEIEACFNLNLTGRLGRRCHKQIKFLRLP IQYSEYSFDSDDDNISYGDSLTDEDIYYPYDSDSEFEVVIDDDDDDDHDDDE" CDS complement(join(22195..22783,22875..22972,23078..23191)) /codon_start=1 /locus_tag="TSUD_122890" /note="Tsud_chr3.g07690.1.au" /product="hypothetical protein" /protein_id="GAU22404.1" /transl_table=1 /translation="MAEAENTTAPNWLELPRDITTNILQRLDTIEIVTIACHICCYAI ERSCGHLEDIDIQFFGFNDVLQCIAMNANNLPCMRLVYCWRISDEGISAAVRNLPLLE EVDISLNMLNEDSLEALGRCCPRLKSVTFARMLCEHFGYGSENIVAFVIAETMPGLRH LNIEANKLTNNGLVAILDACPLLESLEIEACFNLNLTGRLGRRCHKQIKFLRLPIQYS EYSFDSDDDNISYGDSLTDEDIYYPYDSDSEFEVVIDDDDDDDHDDDE" CDS complement(join(26780..27425,27597..27892)) /codon_start=1 /locus_tag="TSUD_122910" /note="Tsud_chr3.g07710.1.am.mk" /product="hypothetical protein" /protein_id="GAU22405.1" /transl_table=1 /translation="MERVIPNWLELPKDITVNILQRLSTVDIVTRACLVCPLWWNICK DPFMWRTIQMIKLHNSTGELLKICQYAIERSCGCLEDIDIKRFGTDDLLKNIAENGSH LRRLRLVDCGEISDTGLIEAAKQLPLLEELDILFSYFSKDALEVIGHCCPLLKSLKWS NEFNFWYVEVEPFSFIKTMPQLRHLELCSDLLTNDELLAILDECPHLESLDIEACNSL VLCGDVRERCCEQIKNLRLPDDFFCDDDTYFDGLSENSSDYSNMDYEDDYDLGDSDSD SGAITGDDKRGYFYGLLGLLPSPRENSDDSDHSDDDP" CDS complement(33741..34070) /codon_start=1 /locus_tag="TSUD_122920" /note="Tsud_chr3.g07720.1.au" /product="hypothetical protein" /protein_id="GAU22406.1" /transl_table=1 /translation="MASSSIPAKEADGEMPNWLELPRDITANILQRLDTVDMVTSVCQ VCPLWWNICKGPFMWRSIHMTMIHNSPYDLVKICCYAIQRSCGQLENVQIRCFGTDDL LKCIAEK" CDS complement(join(36556..38820,38916..40239,40328..41211)) /codon_start=1 /locus_tag="TSUD_122930" /note="Tsud_chr3.g07730.1.au" /product="hypothetical protein" /protein_id="GAU22407.1" /transl_table=1 /translation="MESRVESLEGGLNEVRASIADVQKSLKENFASMTAMMERCMGRS IASDENSSGIGDMIPIPIPKEKMGGVGSNQANNDAFAEFRHSVKKVELPSFDGDDPAG WISRAEVYFHVQNTRSEIKVNLAQLCMEGSTIHFFNALIRENEDMTWEGLKEALLERY GGHGEGDVYEQLTELKQEGTVEEYITNFEYLIAQIPKLPEKQFQGYFLHGLKTEIRGK VRSLVAMGELSRTKLMQVTRAVEKEIQGKSGFGFNRGSRNNTGPPKSGASRNDWVFVR NKESGGSRGCEEWKQWAERKQKGLCFKCGGPFHPMHQCPDRQLKVLIVDEEEEEGGEV KILAVEVDEEEEEGVGEMSILNLHHIAHETHHTMKFQGTIHGVEVLVLIDSGATHNFI SQKLVHQMDWGVDTTPHLNVKLGNGFQIATQGVCKELEVCIGDFKIKPKLHLFELGGI DVVLGIDWLKTLGDTITNWKQQTMCFWWDKKWTTLKGQGGCRNAAVALQSILSKPKPK NTQELLWQASTVKTKGGGDSNLDEQQQIELGKLLEKHEQVFQSPSGLPPKRINDHAIN LVEGHKAVNVRPYRYPYHHKNEIEKQIKEMLAAGIIRHSTSAFSSPVILVKKKDESWR MCIDYRALNKATIPDKFPIPVIEELLDELHGAKFFSKLDLKSGYHQVRVKESDIEKTA FRTHEGHYEFMVMPFGLMNAPSTFQSLMNEIFRPLLRRNVLVFFDDILIYSKDWRGVS WSFNFRGGSAVDPGKVGSVLQWPQPKNVKGVRGFLGLTGYYRKFIRDYGKIARPLTNL TKNDGFKWGKEAQKAFDELKRRLTTAPVLALPDFSKTFLIECDASGEGIGAILMQEKK PIAYYSKALGMRNLTKSAYEKELMAVVLAIQHWRPYLLGRKFTVSTDQKSLKQLLQQR IVTAEQQNWTAKLLGYDFDIIYKQGKLNKGADALSRIHEGEINAMVSQLKWIQEEQVK AEIQQDVKLSKIVADLLQDPKACPGFDLRNGVLLYEGRLVISKNSLLIPVLLDEFHSS PQGGHSGFYKTYRRLAANIYWVGMKGTIQEYVRRCDVCQRQKYMATSPGGLLQPLPVP EQIWEDISMDFITGLPKSKGFEAIFVVVDRLSKYSHFIPLKHPYTAKSIADVFCKEII RLHGMPLSIVSDRDPIFISSFWKELFRMQGTKLKLSTSYHPESDGQTEVVNRCLETYL RCFISDQPRTWVYWVHWAEYWFNTTFHASTEKTPYEIVYGRPPPSLYRWVQGETRVEA VQRDLLDRDEALRQLKAQLLRAQEKMKFQADKKRIDRSFICGEWVFVKLRAHRQHSVV TRINAKLAARYYGPYPIIEKIGAVAYKLKLPEGSRVHPVFHVSLLKKAVGNYHGNEEL PELMEEQSDLFEPEAMLAARKIKQHGEEVKQVLIHWKGKTVEEATWEDELVIRGQFPK FALEDKVYTEGGSIDRTQSIDEDLSREQLVSNSSNGPHTWLVYSRRKGKKGNSG" CDS complement(join(41661..42255,42370..42695)) /codon_start=1 /locus_tag="TSUD_122940" /note="Tsud_chr3.g07740.1.am.mk" /product="hypothetical protein" /protein_id="GAU22408.1" /transl_table=1 /translation="MPLSSFPAKELEGVIPNWLELPRDIMVNILQRLSTDDMVTRACL VCPLWWNICKDPLMWRTIQMIKLHNSTSDLLKICRYAIERSCGHLENIDIQYFFTDDL LKYIAENGCHLGCLRLEDCCEISDKGLIDAANKLPLLEELDILFSNITKDSLEVIGQS CPFLKSLKYCIGFDADNKWYDEAFSFIKTMPQLRHLEICSDLLTNDGLVAILDGCPLL ESLNIQDCDYLDFSGNVWKRCCEQIKDLRLPYDFEDGYFGDGDTHFDNLSENSNDDSN LDSEDDNDDSECGTMIELNQLMKIYQGNSW" CDS complement(join(44145..44272,44363..44730,44939..45255)) /codon_start=1 /locus_tag="TSUD_122950" /note="Tsud_chr3.g07750.1.am.mk" /product="hypothetical protein" /protein_id="GAU22409.1" /transl_table=1 /translation="MALKLEKKIGLVPNWLELPKDVTSKIIQLLGVVEMVMNARQVCP MWRKICMDPLMWKNIEMINCFKSPHNLEKICMYAIDQGGDHVEEINIEYFATDELIKL LAERTRNLRRIRISKCPKITDEVFSEAAKKFSLLEELELSFNDELTKDSIEAIGQNCP LLKTLKFNQPYKGINCRSYKGYKSNKQALAIAKTMPGLRHLELWGNKLTNDGLIAILD GCRYLESLDIHEHDDDDDDDDFTYEFYCECIVRGSKGMKGRKIKYVDFYKFH" CDS join(49732..49785,50700..51200) /codon_start=1 /locus_tag="TSUD_122960" /note="Tsud_chr3.g07760.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22410.1" /transl_table=1 /translation="MATAGVINKSFSIPPYPEMILKAIEELNEENGSNKSSISKYIES TYGGLPQGHKALLNLHLARMRDSGELVFWKNNYTKRDPDAPPRRGRGRPPKPKESFSL GVVYSPPKPKGRPPKDPNDPPKSPKVKASTGSGRPRGRPRKMSQPTRGFDGALASDVG TGGSGRPRGRPPKMKSTPLTEISA" CDS join(56447..56704,57503..57646,57749..57817,58244..58431, 58725..58775,59707..59884) /codon_start=1 /locus_tag="TSUD_122970" /note="Tsud_chr3.g07770.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22411.1" /transl_table=1 /translation="MASSLDMSLDDRIKNNRSIRGRGRGRGKALSGRGSGTVGGGRRA SAVNGRRVAGNGGRTTGAVRRGPLMVNTRPSSYAIAKASSKHSIRRTKAFPWQNDLFE DSLRAAGIQGVEIDTKLYVSNLDRGVTNEDIRELFSELGDLKRYAVHYDKNGHPTGSA EVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSELPVTARVNVSAMNGQRKRTVV MAPRGGRVGGPAMLNRGAGWGRRGGSRGGSGSVRGRGRGRPGRGGGRGRGRKDGVEKS AEQLDKELETYHAEAMNIS" CDS complement(join(61054..61386,61752..61887,62301..62366, 62551..62609,63949..64650)) /codon_start=1 /locus_tag="TSUD_122980" /note="Tsud_chr3.g07780.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22412.1" /transl_table=1 /translation="MSLSCGVECIFVFGCARWLWKRCTYIGSYDSATWPSATAVEFES VPRVCRLILAIYEPDLHNPQNYIPANGYRLNPDWVIKRVTYEQTQGHAPPYIIYVDHD HREIVMAVRGLNLAKESDYKTLLDNKLGQQMFDGGYVHHGLLKSAVWLLNRESETLKS LWIENGSDYGMVFAGHSLGSGVVSLLSILVVNHRERLGGISKEKIRCYAIAPARCMSL NLAVKYANVIHSIILQDDFLPRTATPLEDIFKSIFWDTFIPEDRKLRDPRRLYAPGRI CGRFPPEVRTAIPVDGRFEHIVLSCNTTADHAIIWIEREAEKALQLMKDQESSKTVTV APTIQKFERLKTLEKEHKDALERAVSLNVPHAVDSAEEEPLENNGEGSGINGDKEASS STETKPSGGRLNWEEVVEKLLKKNETGEKHIEDDTNVSH" CDS complement(join(67316..68577,69889..69949)) /codon_start=1 /locus_tag="TSUD_122990" /note="Tsud_chr3.g07790.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22413.1" /transl_table=1 /translation="MVMHFLLLLLFAGSLVAADEEPFIGVNIGTDLSDMPHPTQTVAL LKAQQIRHIRLYNADQGMLTALSKSGIQVAISVPNEELLAIGQSNSTALNWVSRNVLA YYPSTNITSICVGSEVLTTLPNAAKLLINALKYIHSALVASKLDSKIKVSTPLPSTII LDSFPPSQAFFNTSMNQVLIPMLDFLQSTQSYLMLNIYPYFDYMESNGFIPLDYALFK PLPPNKESIDSNTLLHYSNVFDAVVDAAYFAMSYLNYTNIPVIVTETGWPSKGSSNEP DATLDNANTYNSNLIKHVLNKTGTPKNPGIAVSTYIYELYNEDTKPGALSEKNWGLFD SNGVPVYVLQLTGSGAVLANDTNGETYCVAKDGADPKMLQAGIDWACGPGKVDCSPLL QGQPCYDPDNVVAHANYAFDAYYHQMGKSTKACDFNDMATISTSNPSK" misc_feature complement(join(84820..84943,85055..85543,86197..86326, 86749..86881)) /inference="ab initio prediction:Augustus:3.0.3" /locus_tag="TSUD_123000" /note="Tsud_chr3.g07800.1.au" /note="putative frameshift mutation" CDS complement(99670..100155) /codon_start=1 /locus_tag="TSUD_123010" /note="Tsud_chr3.g07810.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22414.1" /transl_table=1 /translation="MPDCSSCVAHAVSHAGDICPGACGGVVQLEGCYVKYDNLKFLGA EDKTIVLKKCGPYVGYDTGTRDAVLSGLMGSGGGYFRVGGSGQLKGMAQCIGDLSFVE CEDCVSEAIRRLRSDCPAADYGDMFLGKCYARYSTGGGGGGAAHSYSKAHGKAQAQLL C" assembly_gap 100365..100617 /estimated_length=253 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS complement(join(112421..112585,113725..113808, 113907..114018,114506..114603)) /codon_start=1 /locus_tag="TSUD_123020" /note="Tsud_chr3.g07820.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22415.1" /transl_table=1 /translation="MVALVSQENVVTLVSRTGRELQRYRKGRRQVVGCIPYRFKIGEK NSLDVLDELEVLVISSQKGKGMLFPKGGWELDESQKEAALRETIEEAGVRGIVEMSIK EARDVCQHWWMKEALDRLVNRLMGQKLGRENQILRPLNCIGDAKSDLLIV" CDS complement(join(140377..140378,140478..140535, 141741..142019,142110..142200,142279..142802, 143355..143794,143873..144020,144488..144585, 145360..145628,146238..146383,146766..146969, 147687..148061)) /codon_start=1 /locus_tag="TSUD_123030" /note="Tsud_chr3.g07830.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22416.1" /transl_table=1 /translation="MEEPNSDQENQLSHKIAAILDEVRISYATHNRKLKELSLLRSKS SSPSQFFSAFSKSLIPLFNFQRRLASADRVVSFVSSFTAARNPTDAEVCDEFLDHFLH FLLVAATAADKTVRFRACQIVSEIILRLPDDAEVSNDLWDEVIECMKVRVQDKIHVVR TFAVRALSRFVNDSSNIDILDLFLEMLPLEQNADVRKMIVLSLPPSSATSQVIIDCTL DVSESVRKAAYCVLANKFPLQSLSIKLRTVILRRGLSDRSVGVSKECFKLLKDEWLVK CCNGDPLELLKYLDVETYESVSESVMEALLKAGLVKLKNGASIQQYISSNGDTAEGEV VPCPPSIVLMEAEAALYWRTVCKHLQSEAHALGSDAAATAGTEAEVYAAEASDKNDLL EKILPATVDEYIELVRAHIVAGSNHRFACRQLLLLGAMFDFSDTSYRKAASVFLQELM SKPPEHEVDNEGNVVVIGDGLSFGGDTEWAEAIAKLARKVHAAPGEFEEVVLAIVEKL AQPCRERTADYVQWIHTLSLIGLLLKNAVSMRFLQGKAIEPDELLQSLLLPGAKQSHL DVQRIAVRCLGLFGLLERKPNAELLKQLRVSYIRGPHLISIEAGKALTDLVMWHGPQE VDRVLNHNIPSQVNSDKKCFCPVNFSDSEVDSNSNVDMLDLLYGGIENEDWANPLTSN EDECIYAILGEGFAKILLLSDNYPSIPASLHPVLLSKLIYLYFSDISENMHRWLKQCL SVFFENYPCLSTNHKASVADVIFSLRCILKAFIPVMRSMWPGIFGNSGGSPFMVSQMR KRAVQASRFMLQMVQIPLFVKETEAASENSSTEQPQVIDSCAEVPFECGEEGLALRIA VEVASFHSKKTAAEKAYVSAL" CDS join(165878..165951,166520..166559,166666..166758, 166891..166925,167551..167638,168250..168378, 168505..168579,168711..168764,168876..168913, 169017..169176,169303..169455) /codon_start=1 /locus_tag="TSUD_123040" /note="Tsud_chr3.g07840.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22417.1" /transl_table=1 /translation="MSLLSDLINLDLSDSTEKIIAEYIWIGGSGLDLRSKARTLPGPV TDPSQLPKWNYDGSSTGQAPGEDSEPTSHFQGSIQKGYGIEQEYTLLQKDIQWPLGWP VGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGP SVGISAGDEIWAARYILERITEIAGVVLSLDPKPIKGDWNGAGAHTNYSTKSMREDGG YEVIKKAIEKLGKKHAEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRD TEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP" CDS join(171181..171280,171365..171460,173000..173118, 173293..173397,174823..174918,176012..176077, 176857..176925,177024..177080,177452..177529, 177861..177958,178048..178093,178257..178384, 178905..179013,179147..179254) /codon_start=1 /locus_tag="TSUD_123050" /note="Tsud_chr3.g07850.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22418.1" /transl_table=1 /translation="MAMTKLLKKHRFPSFHVFSSSTVTTNSLPISFSGKRLSHWYQNG EYGWRTNLRDPCLWIVISGHVVVTLGISASTAFAEDVTSETSSANSTGDELTGLRKIE DGSGKLDDAERLFMAAIQEAKEGFGEQDPHVASACNNLAELYRVKKAFDKAEPLYLEA IKILEESFGPDDIKRRVLGYGHSECSDTMYQIGMVLYLQGKERDAETIIKESISMLET GGEGESFVCIRRLRFLSQLYLKSNRLDEAEMIQRKILNIMELSKGWYSLDTVIAAESL ALTLQKSSETKQSKELLERCLDVRKALLPGDHIQIGANLLHLARVAKLDSSQHKKLDV SRAKAELDTAKDHLHNSIRIARQCLDKVLKQKDKSKKNSVHGHSRKEAQAALVILLQS LSTLSSVELATQELQEIQVRLCGRSFIRCDMV" CDS 182224..182667 /codon_start=1 /locus_tag="TSUD_123060" /note="Tsud_chr3.g07860.1.am.mk" /product="hypothetical protein" /protein_id="GAU22419.1" /transl_table=1 /translation="MERKKKPQPQENKDELALVNAAAWAWYQHGSKSEAKMAMNEFDV KRTKCSSRPSHYKLGAMRMTEVTNNNSLLDTYEVQCISRQLDSLLESSNKKHVDDTCN FAKTDNGNGRVDNKKRFFKFREFWAKNVVACGGGDDVVGVKFICT" CDS join(185104..185208,185298..185346,185442..185530, 185632..185688,186868..186930,187021..187086, 188836..188955,189041..189106,190307..190393, 191065..191158,191255..191781) /codon_start=1 /locus_tag="TSUD_123070" /note="Tsud_chr3.g07870.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22420.1" /transl_table=1 /translation="MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWEL FVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKNDMIMAPFIMERRHHNN RKGDLATTISYYRVAYGASLSRVLQELDENFYNRVLKKAFLHLPEIMRDPDTGNSRGF GFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTA QKSRPHTLFASGPPTLPNAPQANGTIAAPAPPRPFSNGVPPPIPVIHPPPPQAAAFQP MQMPPPGQQQWHQQQPGQQMMQQGMPPPPMQQFRPPHSMQMPPPPPQGMQGPPRPLPP PSVMAGQQQVWRPPPPPQQQGGHPMGYPQNSMPPPPPPNHHGMRPPSG" CDS complement(join(<192563..193358,193977..194140)) /codon_start=1 /locus_tag="TSUD_123080" /note="Tsud_chr3.g07880.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22421.1" /transl_table=1 /translation="MSREKLAGLSLDDILANQKRANPPPPLPSQHPPPSKSRTLLDII KDDETNKKDRRSWKAFKDKLRLKRAGSAWTSTIHIPTSDIPIQNPNGRSFSQFGRRDS VRVQSLHDSDMSAQAMTHQVEDLDPPNESDALVSKPQFTRKSSTRLTGDSPENLSSAR NLRQLSRTNSANVSSEPFRRERVVTFRDSFDDDEPGDDQLDAGSRGLSAREAVAAQEA AEAAAEEEEAEAGPPTMSLMDLLGETDRELGLEGSRYILSDEDEDEDYYDDEEDDEDG ENALEQTCCICMVKHKGAALAACGHSFCRMCSRELMVAKGNCPL" CDS complement(198973..200067) /codon_start=1 /locus_tag="TSUD_123090" /note="Tsud_chr3.g07890.1.am.mk" /product="hypothetical protein" /protein_id="GAU22422.1" /transl_table=1 /translation="MALIVNLPIGTPPQTQQMVLDTGSQLSWIQCHKKQPPTASFDPS LSSTFSILPCTHPLCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLAREKFTFS RSVSTPPLILGCATESTDPRGILGMNLGRLSFAHQSKITKFSYCVPTRQTQTQNRPGL APTGSFYLGNNPNSKWFKYVGMVNFSPRQRMPNLDPLAYTIPMQGIRIAGKKLNISPA VFRADAGGSGQTMIDSGSEFSYFVGEVYDKVREVVVKAVGPRIKNGYVYGGIADMCFD SKNAVEIGRLIGEMVFEFEKGVEIVIPKERILADVGGGVHCVGIGNSDKLGAASNIIG NFHQQNLWVEFDLVNRRVGFGKDDCSRLGK" CDS 216057..216482 /codon_start=1 /locus_tag="TSUD_123100" /note="Tsud_chr3.g07900.1.am.mk" /product="hypothetical protein" /protein_id="GAU22423.1" /transl_table=1 /translation="MNLEMEAETVVHTGGCHCKSVRWRVIAPSTVLVWDCNCSNCYMR GNAHFVVPADKFELLGNSAEFITTYTFGTHTAKHTFCKICGITSFYYPRSNPDGVGVS SKCIDSGTLTRVEIKHFDGKNWERSFDESDISSYSKAQK" CDS 219971..220396 /codon_start=1 /locus_tag="TSUD_123110" /note="Tsud_chr3.g07910.1.am.mk" /product="hypothetical protein" /protein_id="GAU22424.1" /transl_table=1 /translation="MNPEMEAETVVHTGGCHCKSVRWRVIAPSSVVVWDCNCSSCYMR ANAHFVVPADKFELLGNSAEFLTTYTFGSHTAKHTFCKICGITSFYYPRSNPDGVAVS FRCVDSGSLTHVEIKHFDGQNWERSYNDSAISSCSKVQK" CDS complement(join(220840..221739,225526..225659, 226526..226946)) /codon_start=1 /locus_tag="TSUD_123120" /note="Tsud_chr3.g07920.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22425.1" /transl_table=1 /translation="MGLGLLASKAMRPTTRLINFQNPNNLFLRTIVSKPELRNPEPAA AQPEQPLVDLSPRTPVGGARVHFPNPDDAIEVFVDGYPVKIPKGFSVLQACEVAGVDI PRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPDCPICDQGGECDLQDQSMAF GSDRGRFTEMKRSVVDKNLGPLVKTPRVEAAMVNARIRKSVTANQAKVGYIGPATDSN YDSQHLGTGPQTLVDIAEGRHSFSKIISNAKHPVIIVGAGIFERKDQDAIFAAVETIA KQGNVVRSDWNGLNVLLLHAAQAAALDLGLVPQSENSLESAKFVYLMGADDTNLDKIP KDAFVVYQGHHGDKSVYRANVILPAAAFSEKEGIYENTEGCTQQTWPAVPTVGDSRDD WKIIRALSEVAEVRLPYDTIGGVRARLRTVAPNLVQIDEREPAALPSSLRPTFTQKVD PTPFGVAVENFYMTDAITRASKIMAQCSAMLLKK" CDS complement(join(231063..231327,232170..232608, 232721..232805,234023..234163,234321..234398, 234562..234681,234856..234962,235048..235111, 235224..235356,235908..235981,236077..236148, 237082..237159,237592..237668,237768..237850, 238319..238433,238565..238678,238755..238815)) /codon_start=1 /locus_tag="TSUD_123130" /note="Tsud_chr3.g07930.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22426.1" /transl_table=1 /translation="MALIFFFFLFFASHFLSSISGQSSSMESVPDLQNTMYTDVDGYP CVRLLNLSGTIGCSNPGRDKVVAPIVRFKNVDDVSELSTILVSLDEFPTLFTRLSADP SFARKVGGVLIESVTDSQKKLNGFSPDQKFPQAEFAPYHNISYEWNPIGSGIMWKSYS FPVFLLTESGTKTLKEFVLKSEDKRKSYTSNVAEFDLVMQTMKSGTHDSESCLKEGTC LPLGGYSVWSSLPPINISPLNPPKPIILTVASMDSSSFFRDISVGADSPISGLIALLA AADALSRLDGLRDLIIGIRKRLDKALMFWLCRPIPTLREEVTCTQQIEGKLVFVVFTG EAWGYLGSRRFLVELDEHSDAVHGLNHSLIEKVLEIGSVGKGLSQGQGAKNFFAHAEG DSSATDHIMVALKHAQESLLSEDIRITSASASNPGIPPSSLMTFLNKNPGISGVVLED FDSSFVNKFYHSHLDDLSNVNSSAVVAAASLVARTLYILASETNDVQNSTLAAINVNV TLVEKLMDCLLDCDPGLSCELVNKYISPASTCASNYVGVILDEPSSTPYSGYINDIPR FIWNFLADITSIPKENNSSSCQQGCSGNEVCIKAETDGKGVCTLSTTRYVPAYSTRLK FESGVWSVLPPNSSDKMGVVDPVWTESNWNTIGIRVYTVQIAAYDRVVLFGGIALTIL AYLAIAVTRTFVAKATKRD" assembly_gap 233576..233920 /estimated_length=345 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS join(241561..242230,243247..243599) /codon_start=1 /locus_tag="TSUD_123150" /note="Tsud_chr3.g07950.1.am.mk" /product="hypothetical protein" /protein_id="GAU22427.1" /transl_table=1 /translation="MTRKKVKLAFIINDSARKATFKKRKKGLMKKVSELSTLCGIDAC AIIYSPYDPQPEVWPSPLGVQRVLSKFRRMPELEQSKKMVNQESFLRQRIQKAKDQLT KQRKDNREKEMTQLMFQYLSADKIMPNISMVDLNDMAWLIDQYLKDINRRVESLTKNG QGQPQMVAPTMVTNGVAKIEDNGQGSNGHGNNVLDMNMDVMQKQHWFMNLMNHGGGGE EAAPLVGETEESKTSIGVDCYAYWSGRNAIWKGGEDGKNERCGGGKGGGGGGGKGFNT LMWKKVKSRGTEWWKGGKGSGNRNVGGGGYVQPIPGGGNGVGGGNVKNIPNGVNEGGS GKGDNG" CDS 241561..242280 /codon_start=1 /locus_tag="TSUD_123140" /note="Tsud_chr3.g07940.1.au" /product="hypothetical protein" /protein_id="GAU22428.1" /transl_table=1 /translation="MTRKKVKLAFIINDSARKATFKKRKKGLMKKVSELSTLCGIDAC AIIYSPYDPQPEVWPSPLGVQRVLSKFRRMPELEQSKKMVNQESFLRQRIQKAKDQLT KQRKDNREKEMTQLMFQYLSADKIMPNISMVDLNDMAWLIDQYLKDINRRVESLTKNG QGQPQMVAPTMVTNGVAKIEDNGQGSNGHGNNVLDMNMDVMQKQHWFMNLMNHGGGGE EAAPLGDANHQNGFWQNQFFH" CDS join(243064..243154,243247..243599) /codon_start=1 /locus_tag="TSUD_123160" /note="Tsud_chr3.g07960.1.au" /product="hypothetical protein" /protein_id="GAU22429.1" /transl_table=1 /translation="MKTKHFILLCFFALLLIFVVPIEPSKDVKKIGETEESKTSIGVD CYAYWSGRNAIWKGGEDGKNERCGGGKGGGGGGGKGFNTLMWKKVKSRGTEWWKGGKG SGNRNVGGGGYVQPIPGGGNGVGGGNVKNIPNGVNEGGSGKGDNG" CDS complement(245706..246992) /codon_start=1 /locus_tag="TSUD_123170" /note="Tsud_chr3.g07970.1.am.mk" /product="hypothetical protein" /protein_id="GAU22430.1" /transl_table=1 /translation="MFRRTHKAKEQLSGGDLTVEEITIPTHFRCPVSLDLMKDPVTLS TGITYDRVSIEKWIESGNKTCPVTNQKLSSFEITPNHTIRKMIQNWCVENISYGIERI PTPRIPVSSYEVSEICTRLLSGCRNLDEKKCVEFVGKIKVWWRESERNKRVIVGNGVF SVLATVFDSFSCVSFEKHVVILEEILEILTWMVMTPFGDSKSRLCLSSNSLSCLVWFL DGKDLGARQNAVLLLKETMNVEELSKVEGVVEGLIKIIKEPIGSSATKACLITIFKLV SSTKNRVEIGEKFVELGLVSFLLETIVDGEKGICEKALGVLDCLCDFKKGIEVIKMND LTLPLVIKKLLRVSPLASSFVVGIVRKILCEKKEERVLIEAIQLGAFQKLLVMLQVGC EEKTKENTTELLKLLNGYRSKAECVDSSLDFKYLKN" CDS complement(251092..251340) /codon_start=1 /locus_tag="TSUD_123180" /note="Tsud_chr3.g07980.1.am.mk" /product="hypothetical protein" /protein_id="GAU22431.1" /transl_table=1 /translation="MEESGNGLSGNGKGDGNIWKDNQHWGTGWRNGGGVNGKNRGSAK VSGGGYLQPIPGSKKETGVLPIPGSEKEGDNKKILVLF" CDS join(256276..256384,256472..257791,257967..259436, 259518..260659) /codon_start=1 /locus_tag="TSUD_123190" /note="Tsud_chr3.g07990.1.au" /product="hypothetical protein" /protein_id="GAU22432.1" /transl_table=1 /translation="MPPRVAPIDPASDPSSPYYVHSSDGPSSVKVSPLLTVPIDQFDP SFRAWNRCNMLVHSWIMNSVSDSIAQSIVFMENAINVWNDLKERFSQADLVRIDELQQ ELHSLKQDSRSVTEFYSDLKLIWEELEIYLPMPNCSCQDRCTCESMHSARANHSLLYI IRFLTGLNENFSVVKSQILLMDPLPPMNKVFSLVLQHERQGKFSPSDDSNVLLNATKS KGSFPSKTTRVCILCGKDNHIVENCFKKYGTPPHFRKNSQADSAEIEGGNDEQSTAAN SNFNTQDQALQLISLLQSSFPSQASSSAASNQVGSVEFTGHTSVNQGMHSQFFKTCSL GNWIVDSGASHHMCSSTQCFHSYREIIPIKVRLPNGNVVLAKHSGVVKFSDSLVITNV LCIPNFSVNLISVSQLCKMQNYKVHFTDSKCTIQDQLTKRMIGSADLIEGLYYLTLTS EEVHAHSINGTQHTNIPDQALWHFRLASKSIHNHAYFLTAVDDYSRFTWVTLMKHKAE ARQHVINFIKLIETQHNSKVKIVRTDNGVEFLMPQFYASKGMVHQTSCVETPEQNGRV ERKHQHLLNVGRALLFQAHLPKIFWSYAVQHATYIINRVPSVVLSNKSPYELLHNVLP DIKDLKVFGLLAYASTLQSHRTKLAPRARKCIFLGYKQGVKDTILYDLHSKEIFISRN VTHHDHILPYKPQSDHLLWHFHTSSEPTNVPETTHTSFNSDQPVDIPTPHEHVTVIEP TQNLSNDVQLVEPSDIAEPSHMSDTCETQCTNHNNALNQPVQPISDHLDQSSALPTSP DSNPTHRSTRLKHAPSYLSDYVCNQSTTSPGTQSSSGSLYPISDYHSLKNLSSIHHAF TVSLTHNTEPKSYLEACKFECWQKAMDDELEALTKTGTWVIVDLPSHIKPIGSKWVYK VKYKADGTIERYKARLVANGYNQVEGLDFFDTFSPVAKLTTMRLLLAIASIKGVTTLK QNQVCKLQKSLYGLKQASCKWYEKLTSLLISEGYSQSTADYSLFTLHNASHFTALLIY VDDIILAGTDLNEITRIKKILDTHFKIKDLGVLKYFLGLEVAQSREGITISQRKYCLD LLKDSGLLGSKPASTPLDPAVKLHIDDSKPYENVSLYRRLIGKLLYLCNTRPDISFAT QQLSQFLHKPSVNHYHAACRVIRYLKHNPGRGLLFPRKSDIQLLSFSDSDWAGCLDTR KSTSGYCFFLGSSLISWKAKKQTTVSRSSSEAEYRALSSATCELIWLTYLMDDLKVQC SKLPVIYCDSQSALHIASNPVFHERTMHLEIDCHLVREKVQQGILRLLPIPTEEQLAD CLTKSLAAPKFNELISKLGLIDIYQP" CDS 271142..271924 /codon_start=1 /locus_tag="TSUD_123200" /note="Tsud_chr3.g08000.1.au" /product="hypothetical protein" /protein_id="GAU22433.1" /transl_table=1 /translation="MRPFFDLEVEATEEYESEVSSHGIASNTSPNSSIITNPTEFHPH SESISLDLSLNFNINNDLVARDSTGISFSSTSESSYEPIIPRVFSCNYCWRKFYSSQA LGGHQNAHKRERTLAKRAMRMGLFTERYASLASIPLNGNSFRSLGIKTHSSLHHGFSP PTIRPVPEIKSNAGFKQGCIGHPILLEDDETELFWQGSFHQVTEGGKVGSTHWTLNNQ TSDFNTTGSNTHEISNMCFTEVNVKPLVDNIEISAPELTLKL" CDS 273484..275271 /codon_start=1 /locus_tag="TSUD_123210" /note="Tsud_chr3.g08010.1.au" /product="hypothetical protein" /protein_id="GAU22434.1" /transl_table=1 /translation="MAVDGLPSDCWELVISKLIDNVEKEERKHYLETLSLVSKQLVSI TNTFVHSFKLINNPSSLSISHIFNRFPNLTSLDLSAYTRHPDDLNALISQIPPPSFSR LTSLNLSNNPIIPTLGLRSFLKNNLTSLICSNIASLKFTDITFIADFFPFLQHLDISF PGGKPKSQHKDYNNALNFLAQKLSKLRTVDLSANFYINDSFFLQLCINCEFLQQVLIS RCPFITHAGIALAIHHRPTLNSLSVTNFMEEPIELEKVNSFSYFIDSLANLKRLTYLD LSSSCINDLLLQSIAREALPLTKLVLQNCYNYTYYGIYCLLSKSPSLQHLDLQCANFL DDQLFNQLCAFLGGLVSINLSCCLRLGNSSFFALLINCPLLAEIRMESTNIGIGPTPS VVDFEVYPQVKSLHLCWNMHLQDKQINIFGFMFSNMQLIDLSFCKRISEQGIATLLSR CPKIRHFKFNGFPQAKIRHFKFNGFPQAKLFSINFEVSRLDLEVLNLSHSRIDDKQLY EISKICPRLLQLDIKHCNDVTKKGVQLAVENCTCLREINLQGCREVSNDIVSWMIFAR PSLRKITAPHFRPRDCDRKLLSEQRCLVF" assembly_gap 278003..281802 /estimated_length=3800 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 282448..283623 /estimated_length=1176 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 284105..286057 /estimated_length=1953 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS complement(join(287438..287874,288903..289368)) /codon_start=1 /locus_tag="TSUD_123220" /note="Tsud_chr3.g08020.1.au" /product="hypothetical protein" /protein_id="GAU22435.1" /transl_table=1 /translation="MWQSHNNKLWRKQTETTYAVYDRACTVLTEWQTAHAEQTNSINR QLQPAELKWSKPSLGRYKCNIDASFSSDIDKVGIGMCIRDDQGKFLLAKTEWFSPTCD VEMSEAQGLLHAFRWVCDLQLEDIDFELDAKIVVTKFHSKNDDISELGDVIRDLARDS WSAAGLSSVLHNATYQQTNVMDRICAICNNESSDIVGRVAMLLWCIWHNRNDKLWNDN VQMSRQIGRHAFDVWNDWYSVHKLQSNNVSGTTKADLVRWEKPALDWVKCNVDVAFVS GSGRTSMGLCFRDNNGHFKSGMTQ" assembly_gap 291126..291425 /estimated_length=300 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS 291563..291718 /codon_start=1 /locus_tag="TSUD_123230" /note="Tsud_chr3.g08030.1.am.mk" /product="hypothetical protein" /protein_id="GAU22436.1" /transl_table=1 /translation="MKSIKISKPSNEDDENLNAIEESSTLKTMISPKKRRRWKREKEE QVATNGL" CDS join(298631..298665,298936..299002,299072..299149) /codon_start=1 /locus_tag="TSUD_123240" /note="Tsud_chr3.g08040.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22437.1" /transl_table=1 /translation="MTSAAVDLQCLLSDEQLFGSNNENLPKIISVVKEILSGPDRIGT EEAINQMIDFIVQHD" CDS join(301593..302978,303716..303784,304517..304621, 304796..304861,304957..305010,306162..306236, 306330..306457,306707..306815,306909..306975, 307072..307178,307264..307320,307435..307593, 308245..308334,308515..308600,308694..308760, 308859..308928,309021..309121,309738..309842) /codon_start=1 /locus_tag="TSUD_123260" /note="Tsud_chr3.g08060.1.am.mk" /product="hypothetical protein" /protein_id="GAU22438.1" /transl_table=1 /translation="MASTSTATEIPSSPPPPPQTSQPPLRNYEEIATKRREIEKSQNQ SLINGFDLQPHATKILESKDTSSLQETITNFINSKKPSFRTILKSLAYHYPNAFAFKL AKLLNLHPSFPIRTETVSILLSIFKESNKLNFTPVLIKIKEPLLNSLKIESNESILRP LCETIGLVAARIYHFPLGGWLELLQYVCDCFSRNTKLNHMKALIMLAELPEDVAENRE FWLGYGYYDVLFSNLLKFVNSPDQEWRELTFNASLIVIKMSRNLARAEVCDSLLPVLL RLIELQYGGDDDLLDVDLSDMVKRLGDLVTLDIKEIFNGKESDVFWLLLRVAEREDVS DEIKCAVVTVIKELDEANSDAMESVIKKIRKKEIRRVISVAMDMMSCVVDDPVWYDVD NKICEDAGLTENFNRGKYLLNLLSFDGDERVFVPVAIQMLERKYAIHGDWRVRYAAML TIAAIAERNFKGDMIKYIDQAVTLVHKSLNDMNHRVYAVIAIRFLVTNCGLEKINSFG EEIVVLLLKLLKHEKQKLQEEVIETLKSVALLMPVTFCQNHYDKFKEHEVLVIVESLI SIGGKLSDTDHLARYVILKALDLFCVCQRVNIDKFIDQIMPMLLTYAQLDLNLTTSMP MDLSLDDDKNLVEMVRVQTCNVLSCCADRSAEKISPNAVEVTNIFLRWIGCSSFETRK ACMLGLPKLLPLIKEGVIPKKDKIEVARRITLSVIEALGKETDSDLSKRMFRLLPKCI KTSGSFSNIKLLSVIVDGINQALKKIMENEIKRVKEAGTSEEEGDFLPTQETIKDAGC LIATTTETFKNGLCIDRLMKNVALFLETNMPDRVIVFAISIFNILVPQFPENLQPHHD KYIIAACHALRNDIPHSQPHAIRAIGICAEFGKDQFNLHLASVSVSRLYNVAGCDTAV EALGKICEYHRDKIEGSKIDPKILFTRAAVIGHFVGGSNDRNGYKVERMQLL" CDS join(301593..302978,303716..303919,304517..304621, 304796..304861,304957..305010,306162..306236, 306330..306457,306707..306815,306909..306975, 307072..307178,307264..307320,307435..307593, 308245..308334,308515..308600,308694..308760, 308859..308928,309021..309121,309311..309406) /codon_start=1 /locus_tag="TSUD_123250" /note="Tsud_chr3.g08050.1.au" /product="hypothetical protein" /protein_id="GAU22439.1" /transl_table=1 /translation="MASTSTATEIPSSPPPPPQTSQPPLRNYEEIATKRREIEKSQNQ SLINGFDLQPHATKILESKDTSSLQETITNFINSKKPSFRTILKSLAYHYPNAFAFKL AKLLNLHPSFPIRTETVSILLSIFKESNKLNFTPVLIKIKEPLLNSLKIESNESILRP LCETIGLVAARIYHFPLGGWLELLQYVCDCFSRNTKLNHMKALIMLAELPEDVAENRE FWLGYGYYDVLFSNLLKFVNSPDQEWRELTFNASLIVIKMSRNLARAEVCDSLLPVLL RLIELQYGGDDDLLDVDLSDMVKRLGDLVTLDIKEIFNGKESDVFWLLLRVAEREDVS DEIKCAVVTVIKELDEANSDAMESVIKKIRKKEIRRVISVAMDMMSCVVDDPVWYDVD NKICEDAGLTENFNRGKYLLNLLSFDGDERVFVPVAIQMLERKYAIHGDWRVRYAAML TIAAIAERNFKGDMIKYIDQAVTLVHKSLNDMNHRVLWATMHAIKCLSEYKEILKFCN YHLKFVEKLIGIIKISLCPRVQVYAVIAIRFLVTNCGLEKINSFGEEIVVLLLKLLKH EKQKLQEEVIETLKSVALLMPVTFCQNHYDKFKEHEVLVIVESLISIGGKLSDTDHLA RYVILKALDLFCVCQRVNIDKFIDQIMPMLLTYAQLDLNLTTSMPMDLSLDDDKNLVE MVRVQTCNVLSCCADRSAEKISPNAVEVTNIFLRWIGCSSFETRKACMLGLPKLLPLI KEGVIPKKDKIEVARRITLSVIEALGKETDSDLSKRMFRLLPKCIKTSGSFSNIKLLS VIVDGINQALKKIMENEIKRVKEAGTSEEEGDFLPTQETIKDAGCLIATTTETFKNGL CIDRLMKNVALFLETNMPDRVIVFAISIFNILVPQFPENLQPHHDKYIIAACHALRND IPHSQPHAIRAIGICAEFGKDQFNLHLASVSVSRLYNVAGCDTAVEALGKICEYHRDK IEGSKSIFPYLAQLVATKDIIAGAAVRTPDFPLLHT" CDS 317624..318220 /codon_start=1 /locus_tag="TSUD_123270" /note="Tsud_chr3.g08070.1.am.mk" /product="hypothetical protein" /protein_id="GAU22440.1" /transl_table=1 /translation="MMVAVFSLLHGYERSYFKSAFGELIKLVSAEPGLLKPYMSDMVL DALQIAENSGVSDETRRLAFELVMAMTELKECDQMMMNLPYETVVRLFIVPVKMLVLS VKDNRELDEEKKGKGVADGADGENEKVVDDNDVYEFGMKCLKKLCVAFEGRKVVDVCY ELLTKYYLDSTDWKMRHAGITLLTVIAKEFSDEMVTLL" assembly_gap 318567..320744 /estimated_length=2178 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS join(321955..322131,323279..323424,323937..324003, 324096..324162,324258..324394,324734..324825, 324920..324986,325269..325436) /codon_start=1 /locus_tag="TSUD_123280" /note="Tsud_chr3.g08080.1.am.mk" /product="hypothetical protein" /protein_id="GAU22441.1" /transl_table=1 /translation="MVTKILKLFQDSHVQVRLAAFTLMEMPINFVQAAQILYHHRFVH AFTIALGSDQDNKVKEQAASAMLFFLKNTIPDSLALFPNVDTLMNKLLSMIKVKIIVL QYAGFQYFANYLLILLEACSDKSSEIKEEAARGIRICAEFGSPNFKPFINMILSELSN LMKDPSRSISENAKACDVAVSAVGRICEFHRDSIDRSSIVPVWLSFFPLKDDLVEAKI MHEQLCLMVGRLDKDLLGPGNQNLVKIITVFLEVIEKGDKLATTQTINQINNLLRQFG QNIPPSVFETILMSLNPQQRELLLPFVSSF" CDS complement(join(325908..326528,326925..327395)) /codon_start=1 /locus_tag="TSUD_123290" /note="Tsud_chr3.g08090.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22442.1" /transl_table=1 /translation="MAKNDTVHFGILGCANIARKVARAISLSPNATIYAIASRSIQKA EKFAAENSLPASVRIYGSYDEVVEDSGVDAVYIPLPTSLHVQWAVTAASKKKHILVEK PAALDVAELDRIIEACEFNGVQFMDGSMWLHHPRTAHMEHLLSLSNSTGIGPVHFIHS TSTMPTTKEFLENNIRVKPELDALGALGDLAWYCIGASLWAKSYKLPTTVTALPDVTR NAAGVILSITASLQWDQPNQTVANIHCSFLSHTSMDLAICGSNGSMHLKDFIIPYNET SAKFDFTFGAKFVDLHIGWNVRPEEVHVANKLPQEALMVQEFARIVASIRDCGSRPSS KWPEISRKTQVVVDAVKKSLELGCKPVAL" CDS complement(328489..330060) /codon_start=1 /locus_tag="TSUD_123300" /note="Tsud_chr3.g08100.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22443.1" /transl_table=1 /translation="MSGILGMAHDAGMFTVHQTIGSVLCCKCGIRMQPNAANMCVKCL RSEVDITEGLLKRLVLVHCPECESYLQPPRTWVKLQLESKELLTFCLKKLQKNMNINK VKLVNAEFIWTEPHSKRVKVKVSVQKEVYHGAILEQSYLVEYVQQDHLCESCAKVAAN PDQWVAAVQLRQHVSHRRTFYYLEQLILRHGAAARAVRIKQMDHGIDFYFSNRSHGNK FVEFIGKVAPVKSRSDKQLVSHDSKSNNYNYKYTFSVEISPICREDLICLPPKAAAIL GNIGPIVVCTKVTNSIALLDPLTLKFGFLDAEQYWRTSFKSLLTSRQLVEYIVLDIEP VSSEITVGGMKYVLADAQVARVSDFGSNDTQFTIRTHLGHLLKPGDHALGYDLYGANT NDMELDRYKGYIPEVVLIKKSYEEKRQKKRGKARPWKLKSLNMEVDDKIKVDEDKRDA EYEHFLKDLEENPELRFNISLYQNNDYQPSEVGSVTDVDDGEEIPSVPFEELVSGLEE LGLDDNANGEDSMAE" CDS complement(join(342851..343005,343436..343481, 344154..344230,344581..345481)) /codon_start=1 /locus_tag="TSUD_123310" /note="Tsud_chr3.g08110.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22444.1" /transl_table=1 /translation="MPLEGIFIEPTSTPPDLSLHISPPSTSSSLICNNNSTHQVLNYE AHNSSSTNFISSRTLAQAHTELSLGRNFSGGVSGGAQEQPQPLQQQQQHNPYFPHLQH HHNSTTSTTTPISTSPNSTHMNHINYGVSLLDMSSSSSEALRPIKGIPVYHNRSFPFL PAMEHSREKDPKMCLYHHMPNSPTPSPSSSSPLSPYITAGGLDPMSFLNSSGSAAAYR AAVATRFNNEPFKSHQYPLHHHHHHHSHYASVGLGSSEASMMRSRFLPKLPTKRSMRA PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT DKPAASSGFSDGSGEDDVPQIGNNGGIRQFSDQRGLTDRPLQQDMDYSSNTLWSNSSR " assembly_gap 369684..370050 /estimated_length=367 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 370965..373943 /estimated_length=2979 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS join(<387522..387616,387828..388197,388304..388356, 388912..388984,389141..389245,389565..389645, 389727..389828) /codon_start=1 /locus_tag="TSUD_123320" /note="Tsud_chr3.g08120.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22445.1" /transl_table=1 /translation="KLVLLIMVWSSISRRIHISPYVRAVRNIPEFRGQYVFAEGPGYN VINPSTGFQRSFSCKIRPSRFKQELSRASFHQYYRSSAFISQNDRRLCSMPGFRHFSS SSSHASTEKKSQKMLIYLTGLVFGMVGLSYAAVPLYRRFCQATGYGGTVTRRESVEEK IARHDSNQTVTSREIVVQFNADIADGMPWKFVPTQREVRVKPGESALAFYTAENKSST PITGVSTYNVTPMKAGVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEIEEDPKMDG INNIILSYTFFKVSEE" assembly_gap 391147..394645 /estimated_length=3499 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS join(402854..402859,403195..403236,403336..403434, 403509..403568,403679..403777) /codon_start=1 /locus_tag="TSUD_123330" /note="Tsud_chr3.g08130.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22446.1" /transl_table=1 /translation="MMTKDVLKDKFYDKTKASRKSPTKENTKPQEFKLHTQERAVKRA IFNYEVTTKLYLMELKKRQEEKLMKMIEEEEIRLLRKEMVPRAQLMPYFDKPFSPQR" CDS complement(join(<409532..409764,410469..410547, 410784..410896,411177..411219)) /codon_start=1 /locus_tag="TSUD_123340" /note="Tsud_chr3.g08140.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22447.1" /transl_table=1 /translation="MELDIGITHSDFTLAESWFASDTSSGYLEDAITGWDIWCKQHNL PSYSQDQKKKQCLVDHDQEHLIPTFSSKAAQLLQGGHWKKIAYPFELVKPGGVEGETT IKDINQQMMMSPSKPIPHPVAVEDPVSHPCISNSGYGISGKKVAALTRIQTRGR" assembly_gap 413683..413808 /estimated_length=126 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS complement(join(414921..415436,415564..415616, 415840..416093,416249..416463,421316..421520, 421682..421767)) /codon_start=1 /locus_tag="TSUD_123360" /note="Tsud_chr3.g08160.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22448.1" /transl_table=1 /translation="MVLSKTSSESDVSVHSTFASRYVRTSLPRFKMPDESIPKEAAYQ IINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQVCWEK FARYFEVELKEVKLSEGYYVMDPKKAVELVDENTICVAAILGSTLNGEFEDVKTLNDL LVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGI GWAVWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNV MENCRDNMIVLKEGLEKMGRFNIVSKDDGVPLVAFTLKDHTNFDEFQISDLLRRFGWI VPAYSMPPDAQHITVLRVVIREDFSRTLAERLVADVEKVLHELDTLAARIRMISSTSS VTVSEEVVKNNGQVVATKKSALETQREITAVWKKFVLERKKLNDKMNGVC" CDS complement(join(414921..415436,415564..415616, 415840..416093,416249..416463,417134..417319)) /codon_start=1 /locus_tag="TSUD_123350" /note="Tsud_chr3.g08150.1.au" /product="hypothetical protein" /protein_id="GAU22449.1" /transl_table=1 /translation="MIAHLFNAPLEENEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRK QEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPKKAVELVDENTI CVAAILGSTLNGEFEDVKTLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWD FRLPLVKSINVSGHKYGLVYAGIGWAVWRSKEDLPEELIFHINYLGADQPTFTLNFSK GSSQVIAQYYQLIRLGYEGYKNVMENCRDNMIVLKEGLEKMGRFNIVSKDDGVPLVAF TLKDHTNFDEFQISDLLRRFGWIVPAYSMPPDAQHITVLRVVIREDFSRTLAERLVAD VEKVLHELDTLAARIRMISSTSSVTVSEEVVKNNGQVVATKKSALETQREITAVWKKF VLERKKLNDKMNGVC" assembly_gap 426983..427746 /estimated_length=764 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS join(432195..432284,433012..433060,433733..434178) /codon_start=1 /locus_tag="TSUD_123370" /note="Tsud_chr3.g08170.1.am.mk" /product="hypothetical protein" /protein_id="GAU22450.1" /transl_table=1 /translation="MVVKVYGSIRAACPQRVLACLIEKEIEFELPFGQVPVVEDGDLR LFESRAIVRYYAAKYADQGPDLLGTTLEEKALVDQWLEVEAHNFNDLCFNIMFNLVIL PRMGKTGDIALAQICEQKLEKVLDVYESRLSKSTYLAGDKFTLADLSHLPGIEHLIEG AKLGHLISERKNVNAWWKKISSRPSWKKLKELAK" CDS join(438612..438779,439228..439382,439526..439625, 440073..440191,440435..440601,441004..441077, 441171..441344,441456..441575,441696..441862, 442192..442416,442751..443077,443767) /codon_start=1 /locus_tag="TSUD_123380" /note="Tsud_chr3.g08180.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22451.1" /transl_table=1 /translation="MASASGLKRTDSITDNMSSPDASKQSRYHMKRCFAKYLEKGRRI IKVHDLMEEMEQEAIVDPPYVAFAVRPDPGVWEYVKVSSENLSVEPITSTDYLKFKER IYDEKWANDENAFEADFGAFDFPIPKLTLPSSIGNGLHFSLMINDTLSSVAKLQMALT VADAFLSALPLDTPYHDLEPRFKQWGFERGWGDTAGRVKDTMRTLSEVLQAPDSINME KFFSKVPTIFNVVIFSIHVRALEAELLLRINQQGLKVKPQILVVTRLIPDAQGTKCNQ ELEPIIDTKYSKILRVPFQTDKGILRQWVSRFDIYPYLERFTQDATTKILNLMEGNKP DLIIGNYTDGNLVASLMASKLKITQGTIAHALEKTKYEDSDVKWKELDPKYHFSCQFM ADTIAMNASDFIITSTYQEIAGSKDKPGQYESHATFTLPGLCRVVSGINIFDPKFNIA APGADQSVYFPYTEKDKRLTQFHPAIEDLLYSKVDNKDHIWIVAQTDRHRNGELYRFI ADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNHGGPAEIIVDGVSGFHIDPLNGDE SSNKIADFFEKCKVDSTHWNMISASGLQRINE" CDS complement(join(444452..444538,444871..444945, 445356..445394,445495..445581,445721..445792, 446296..446514,447916..448128)) /codon_start=1 /locus_tag="TSUD_123390" /note="Tsud_chr3.g08190.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22452.1" /transl_table=1 /translation="MDSAPCSWLQAIFFLALVWLFNYGSVDGVSVTVKVGNFSKVEDA VNFHIYYGQTFKVIKNAVDGQSYLLLQHLGLLESLKGITSDTVASPCVLKLYKEGKIE MLNKSDYKMLSQFSAHFFGDTDQQPACNFATSVPFSEDTPLQRAEWIKFIGAFANVES RANQVYTTVKENYLCLAEIAKTRTSFKPTVAWMKYDHGVWSFTKEAYYLKIVLVFPFL QTQAYGDTINGFKAPLLGEALINISPEMCDRDTSSTLDPTIVPCG" CDS complement(join(451708..452190,452717..453082, 453153..453167)) /codon_start=1 /locus_tag="TSUD_123400" /note="Tsud_chr3.g08200.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22453.1" /transl_table=1 /translation="MQGHFDAYALCRIFKKSTVIVPKVGEQYVNNVTRHSNHITSDQQ SSSIELYSEGGRDEVLESSNYLMPWDANSTQNINGNNTFNNNGGMTRDNGIWTQFLSE DLLNLPTSSSSFPNYGSTPNYPPSKVDIALECARMQHRFSMPPLEVEDFPHVGFNSEL KMTQLASSSMSGTRNETDILQEILSVAQASQELINQPNYSHTFGGNENYATHHENDFT FMVGNNNYNVNDHMNSMRYDDKVWEDPNMRSIEIGDLDDEFKAERMVENLRWVGMSSN DLEKVSYIANI" CDS complement(join(458352..458717,458778..458841, 459283..459386,459520..461547,461629..461823, 461938..462024,462166..462255,462685..462771, 463590..463652)) /codon_start=1 /locus_tag="TSUD_123410" /note="Tsud_chr3.g08210.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22454.1" /transl_table=1 /translation="MEEHEQVSLPGTVPFDRALEQAIVSIKKGAYLLKCGSRGKPKLC PFRLSPDERNLIWCSGQQEKHLRLSGVTKIVQGQGNIKSQRQNETEKECHSFSLIYAN GEHTLDLICKDKAQAATWFVGLKAVISRCQQPKAFSSLRSCKGVQSCVSSPSGILRRK KNLGLLDDTSQFTQVHSVCASPTLSLSERCFSDGMSYTSDNFYSSASSLSSTHGRTDN SVPSSPYIKPDIHSNTKTSRFEKEYKKDLWSYRSILSPTTSSHVGNSNNNVLKDVMIW GGGIGCLVGVVNERFVQNSIYSLVPKLLESTAMLDVQNIALGGNHAAIATKQGEVYCW GQGKRGRLGQKIDMDISSPKIVDSLSDIRVKKVACGEYHTCALTDSGEVYAWGNDICC SDSVDEGRIRSQWLTHKLSLPVEGISISSVSCGEWHTAIVSSCGRLFTYGDGTFGVLG HGNYHSFSSPKEVESLKGLCVRSVACGTWHTAAIIEVIADRFKYNTSTGKLFTWGDGD EARLGHSDNGNKLVPTCVSQLVDYDFVQVSCGRMLTLALTNMGKVFAIGSAKYGQLGN PHVKDRAVLVEGMLKQEYVKMISCGSYHAAVLTSSGSVYTWGKGENGQLGLGDTENRY TPCFVEALRDRQVDTITCGPSFTVAVCLHKPISISDQSSCSGCRLAFGFTRKKHNCYN CGLLFCRACSSKKVTDASLAPVKSKAFRVCDSCFDRKQGSSSTPSVMDSLKSRNCNNL QIQKHHQNKIGDFTEDRGETNVTNGPLLSVSQSCYRKSMPSGRKIWKNQQESQHDLED NSSKLGSVPQCGQVPCSAQFGINCTENSVVHETDTSKSDKLLLEEVQRLRAEAKRLEK QCELKDNEILECRQKVEESWSVAKEEAAKPHLMLSRSCRIRHVTLLSTIILHTLSGKD NHGLEQKAGLQEFHPNLAPIQTDMNSPRNANMDSLSNSPIIFSSALKSKFGRSILLKN DKLMEKNNLTKAESQQNNADGLKMVEWVEQYENGVYITLTSSPSGERGVKRVRFR" CDS 475247..475627 /codon_start=1 /locus_tag="TSUD_123420" /note="Tsud_chr3.g08220.1.au" /product="hypothetical protein" /protein_id="GAU22455.1" /transl_table=1 /translation="MNTMLGECQVLLHDFILQAQLSDTWIWRLDPVSGYSVRGAYQLL TSHPSDPLDAALDLIWHKQVPLKVSIFAWRLLRDRLPTKTNLAIRGIITSEAQALRGW MRRHGDGSTLIYFMQYLWFSLVIR" CDS complement(486286..486876) /codon_start=1 /locus_tag="TSUD_123430" /note="Tsud_chr3.g08230.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22456.1" /transl_table=1 /translation="MSQLVLISISIYIITLQLTSSSSTSRYSSPSPPATPFSESSPEP PSSTVSDWLSAHATYYSSTDDTRDAVDGACGYRDTHRDGYGITASAALSETLFVRGQI CGACFELRCLEEDVPFDRRWCVSGKSIVVTATNFCAPNYGFDAESEGGHCNPPKQHFV LPVEAFEKIAIWKGGNMPVKYRRYGASFLSELSILL" CDS complement(join(488095..488409,488506..488904, 489090..489151,489287..489398,489517..489657, 489951..489962)) /codon_start=1 /locus_tag="TSUD_123440" /note="Tsud_chr3.g08240.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22457.1" /transl_table=1 /translation="MANQDQDGLTCFSVSPSNSIGNGVSLNSGSHSVTHIQLSDHLSC ANDYALKIRKPYTITKQREKWTDEDHRKFLEALKLYGRAWRRIEEHVGTKTAVQIRSH AQKFFSKVLRDKSEYTTKTKGSIDIPPPRPKRKPVHPYPRKLVETTDSKGILIPKKAM NSISLKTSDFDQESRSPKSVISTPGSESLGSSNSDTPNASLSPISSISCVCASVFTSA KFKTSSKEEAKLDADSASDEKPVMKLEILSNEIVSTKESIAEEPSRQTLKLFGMTLFV TDTHRTSSPTIEACKPIPININFSKVEGKFELVGNSSLCEKSAISKLRVTVRHETCGK GFVPYKRCMSKK" CDS join(492819..493065,493301..493422,494270..494359, 494530..494649,494791..494874,495014..495091, 495435..495533,495623..495712,496347..496382, 496484..496539,497568..497700,498952..499055, 499126..499400,499494..499585,499678..500224, 500407..500497,500634..500675,500958..501114, 501198..501281,501383..501523) /codon_start=1 /locus_tag="TSUD_123450" /note="Tsud_chr3.g08250.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22458.1" /transl_table=1 /translation="MEERRKKIEKWRYIWPMWITLLLHLIAILLFTTGFLLTRTELPY YSHCSDVSQSPCFPSSPNNDSGWIKPSVNRLVIIVMLSESKPWMDKLQVLKNMSSSQP PSAEIFKVIADPPTTSLQRLKGLTTGGLPTFVDVGNSFGAPAIVEDNFINQLFQNGKK VVMMGDDTWTQLFPHHFERSYPYPSFNVKDLHTVDNGCIEHLFPSLYEEDWDVLIAHF LGVDHAGHLFGVDSTPMIEKVVHYNNHLESGPGGLHENTLLVVMGDHGQTLNGDHGGG SAEEVETAMFAMSFKEPLSSVPPEFDSYSCQIDLNGKNVCISSMQQLDFAVTMSALLG IPFPYGSIGRINPELYALGAGSWKSGASQKQPESDIWMKSYANALCINTWQVKRYIDA YSASSAVGFSHDDLSQMASVYAEAENHCGKIDAYFKFLTTVAELARSKWTEFDLNMMG TGIGIMLMSLTFQVFAILRATKQHGVNSSSSSGNSLITTSSTFTLFLLGIRSCSLLSN SYILEEGKVANFLLSTSGIVALRQSVIKEKLLTESTGFLLLSTLCRFAIEVGLSKQAA TSAFMKDYSSWIASIASDLPVWDYTAKFIPMLVLILLAFWLYKATNRSFFDWPWKYVI LGTILSYMLIVVHWITGSGGFGVALMPESIGRNYIPRIVYAITLGQLLLLVCGQLFKR NCLDCKTNLVAKTTAMLSAWSSTVILLSGKQGPIIAVASIVGGYCIMRLDNIEGSKDK PGKSFSIMQWSLFATCAFDGLRYGAAFIGFEEFMLVCQAILLAIDTYGFSIILPVFGL PFLVVTKYQDNLGKHFLFTQLSQMYTIYGLITAVITTFTILCVTIQRRHLMVWGLFAP KFVFDVVELILIDVLICLASIYYFDQGNNDDPELKSSDC" CDS join(506114..507677,509842..510497) /codon_start=1 /locus_tag="TSUD_123460" /note="Tsud_chr3.g08260.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22459.1" /transl_table=1 /translation="MADHRNGSTQAANGKASAAGSAYAIDLNTFQTRLKTFYKHWDES RTDLWGSSDAIAVACPPPSDDLRYLKSTALFLWLLGFEFPETIMVFTKEQIHILCSQK KASILESVKKSARESVGVEIVLHVKPKNDDGTSFMDAIIRAIRVQSKSDGHDSSTVGH IAREEPEGKLLDAWAEKLKNSKFNMVDVANGFSALFAAKSNEEVTSIKRAAYLTTSVM KNFVVTKLENVIDEEKKILHSTLMEETEKVILEPSKVNCKLKADNVDICYPPIFQSGG KFDLKPSAVSNDEALYYDSASVIICAVGARYKSYCSNIARTFLIDADPIQSKAYEVLL KAHEAVIGSLKPGKKLSAAYQAAVSVVEKDAPEMVSCLTKSAGTGIGIEFRESGLNIN AKNDQIVKEGMVFNVSLGFQNLQCENSKSKNKVFSLLLADTAIINKDKTEVVTSMSSK ALKDVAYSFNEDEEEEKPKSKADHSGAEALMSKTTLRSDNHEISKEELRRQHQAELAR QKNEETARRLAGGACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKR DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDGGGWEF LNLEATDSESDHSEESDQGYEPSDVEPESDSEEEDSETDLVPSEDEDSEESDDEDSEE EKGKTWEELEKEASNADREKGNESDSEEDRKRRKAKAAFGKSRGNLSSSMPKRPKLR" assembly_gap 507748..509804 /estimated_length=2057 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS join(533547..533744,534192..534753,534865..535748) /codon_start=1 /locus_tag="TSUD_123470" /note="Tsud_chr3.g08270.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22460.1" /transl_table=1 /translation="MDNLPKCPANYTTLTPLTFLMRASASYANRPSVIHEGTKFTWSQ TYDRCRRLASSLRGLNISKNDVVSVLAPNIPAMYEMHFAVPMAGAVLNTINIRLDPKN IATILRHSEAKVFFVDYEFVSRAKEALRILMEEKNQTEQYSSLPLVIVIDDINSPTGI RLGELEYEQMVHHGNPNYFPEEIQDEWSPIALNYTSGTTSEPKGVVYSHRGAYLSTLS LILGWEMGSEPVYLWTLPMFHCNGWTFTWGIAARGGAKASEKRPIKNPVNILTGGAPP PAALLEEIESIGFHVTHAYGLTEATGPALVCEWQKKWNVLPKREQSSLKARQGVSVLT LADVDVKNLKTMESVARDGETMGEIVLKGSGIMMGYFKDNEANAKAFEDGWFRTGDVG VIHKDGYLEIKDRSKDVIISGGENISSVEVENVLYMHPKVLEAAVVAMPHPKWGESPC AFVSLKKNNDEKKRSDFFSVTEDEIIGHCRKNLPHFMVPKKVIFMEELPKNGNNKFLK NELRDKAKCLVVNHEENKNKKTNNQVNQNNHQILTMSRL" CDS complement(542275..542985) /codon_start=1 /locus_tag="TSUD_123480" /note="Tsud_chr3.g08280.1.au" /product="hypothetical protein" /protein_id="GAU22461.1" /transl_table=1 /translation="MGGGKEWVLFWKHHVAGNWNGIWKAQAPHKARHLLWRLCRGCLP TRYRLLERRVECNLNCPVCDVEIEDEIHIFFMCAVARDSWCAAGLSSVLHNDAYQQSN AMDRIFAMCSNESSDIVGRVAMLLWCIWQNRNDKLWNDNVQTPRQIGRYAFDAWSDWY SVHKLQSNSESRTTEAGLVRWEKPALSWVKCNVDVALVPGSRRTSVRLCFRNNRGQVM AGLTQWQQTMMSSGEGEG" assembly_gap 543233..544345 /estimated_length=1113 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS complement(join(544456..545280,545404..545475, 545581..545724,545808..545875,545987..546083, 546275..546356,546449..546636,546730..547440)) /codon_start=1 /locus_tag="TSUD_123490" /note="Tsud_chr3.g08290.1.au" /product="hypothetical protein" /protein_id="GAU22462.1" /transl_table=1 /translation="MDEINLDNLNIDEEEALNFDLEENSGEYDVNLCLVGRFIHDRPI KFNIMKARLADVWRPVKGMVVKEVTQGLYLFQFFHPLDVEEVMKGGPWLFDNYTLVID RMKVGVALHDIPLYHVNFWVQIHNVPVGMMLEKVGKGLANYIGEFVEYDKNNSTSFWR QYMRVKVRVDVRRPLKIEKKIMLNGGLGGVVKFKHERLGLFCFVCGVIGHSDNKCEVK YAMERDDGSRGWSNEIKAERESQSSGSSQSNETQPRPPDTGRDNYQGGNEVVFAGRNI TPSMSASMGSPRPNHELSLIPLVPHLDDNEMEVQVERKRRRADGASSEETNLESIRVM LGFDSCLAIDVEGRSGGLAVFWKDSSVVLLEISYESYVTCLLFPGVLLAVSDCDLTDI PIEGHPFTWIKSRGTPHVIEERLDRAMASASWLQLFPQNSWLKEPDLEDVVVEGWGGR ENLEDGEVSLQYQELSEKHATLLIQEEGYWKQRAKMHWLQEGDMNTRFFHMSATARSK KKEVTKLVADNGTEAHTQEELCEVTKSYFDNLFKPIDGDHDLVLNLIQPRVTDDDNFF LTAPITKVEIQQALFQMHPDKSLGPDGFNPYFYQRFWEHCSDDIFSAASTWLERGYFP TSLNETNICLIPKCDNPTSMKDLHPISFCNVLYKMISKVLANRLKCCLDKCASQEQSA FMESRSILDNALIATEVIHALKRKTQGRRGELALKIDISKVYDKVD" CDS 547957..548157 /codon_start=1 /locus_tag="TSUD_123500" /note="Tsud_chr3.g08300.1.am.mk" /product="hypothetical protein" /protein_id="GAU22463.1" /transl_table=1 /translation="MSRDVTMSRDVAISANPSRAIHERCLNFDVASIELFAIAIDDTN HRSVLNRRVLKRNSQSQCSQSH" CDS complement(550794..551006) /codon_start=1 /locus_tag="TSUD_123510" /note="Tsud_chr3.g08310.1.am.mk" /product="hypothetical protein" /protein_id="GAU22464.1" /transl_table=1 /translation="MRSTAPPPPPTWTTFIHGGVAAADHTVVGDTAATVGNAKKTHRA GRQVIEDGRRLPVSGKIQFNKIHQTE" CDS complement(join(552132..552232,552886..552979, 553314..553378,554396..554444,554745..554912, 555689..555766,555840..555878)) /codon_start=1 /locus_tag="TSUD_123520" /note="Tsud_chr3.g08320.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22465.1" /transl_table=1 /translation="MATIGHNNLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIG AAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFSRAK KWVQELQKQVFERNMNLSNTRIGGGWGVEFKEARVYAEENGLFFMETSAKSAANVNDV FYEIAKRLPRAQPAQNPTGMVLVDRPAEGSRAASCCS" CDS complement(join(558669..558983,559344..559773, 560229..560326,560741..560867,560953..561038, 561445..561532,561736..561849,562016..562104, 562220..562335,563617..563656)) /codon_start=1 /locus_tag="TSUD_123530" /note="Tsud_chr3.g08330.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22466.1" /transl_table=1 /translation="MDPKLFFSNNFLDGTITSLIDSQQRPAPSVLVIGAGISGVAAAR ILHDASFKVTLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRSLGLT LYRTSGDDSVLYDHDLESCMLFDIDGHQVPQQTVVEVGETFKRILEETGKVRDEHPED ISVSEAISIVLNRHPQLRQQGLAHEVLQWYICRMEAWFAADADMISLQTWDQASAIVL VEEHVLSGGHGLMVEGYKPVINALAKDIDIRLNHRVTKISSGYNKVMVTVEDGRNFVA DAAIITVPIGILKANLIEFEPRLPDWKVDAISDLGVGNENKIALRFDKVFWPDVELLG VVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMLQLKKMFPD ACEPVQYLVSHWGTDPNSLGCYSYDLVGKSMDVYDKLRAPLGNLFFGGEAVSLDNQGS VHGAYSAGVMAAENCQKYLWKEQGNLESLSRVSVRHETLGTNFPLQISRI" assembly_gap 570595..570731 /estimated_length=137 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 572703..574077 /estimated_length=1375 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 575086..575185 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS complement(576424..576771) /codon_start=1 /locus_tag="TSUD_123540" /note="Tsud_chr3.g08340.1.am.mk" /product="hypothetical protein" /protein_id="GAU22467.1" /transl_table=1 /translation="MLSSNIKGVVNGFPLRIEAEKVVEKNVEMNGDFLKKMFEKIEWK AFVEASRGMGYTELPEEADASMLDSDEFLSRFHHALLELHLEEGALVCPETGRRFPVK KGIPNMLLHEDEV" assembly_gap 579387..581354 /estimated_length=1968 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS join(583534..583551,584447..584606,584725..584872, 585001..585078,585749..585833,585922..585981) /codon_start=1 /locus_tag="TSUD_123550" /note="Tsud_chr3.g08350.1.sm.mkhc" /product="hypothetical protein" /protein_id="GAU22468.1" /transl_table=1 /translation="MSPSKLDLCPSVKNILLLDHDGRRVAVKYFSDEWATNSAKETFE NLVFEKTQKTLARNEAEIILLENHIVVYKFAQDLQFFVTGGDEENELILSSVLQAFFE SVTILLRGNVDKKEALENLDLILLCIDEIIDGGIVLETDPNVIAGKVASNSTDSGAPL SEQTLSQALATAREHLARSLLK" CDS join(584193..584237,584447..584606,584725..584926, 585001..585078,585749..585833,585922..585981) /codon_start=1 /locus_tag="TSUD_123560" /note="Tsud_chr3.g08360.1.au" /product="hypothetical protein" /protein_id="GAU22469.1" /transl_table=1 /translation="MQLWPHLPAFYCNIKDLCPSVKNILLLDHDGRRVAVKYFSDEWA TNSAKETFENLVFEKTQKTLARNEAEIILLENHIVVYKFAQDLQFFVTGGDEENELIL SSVLQAFFESVTILLRLFSDTSLVHCLSMSDVQRGNVDKKEALENLDLILLCIDEIID GGIVLETDPNVIAGKVASNSTDSGAPLSEQTLSQALATAREHLARSLLK" CDS complement(join(587366..587752,587857..588052, 588516..588575,588750..588841,588998..589120, 589292..589909)) /codon_start=1 /locus_tag="TSUD_123570" /note="Tsud_chr3.g08370.1.am.mk" /product="hypothetical protein" /protein_id="GAU22470.1" /transl_table=1 /translation="MVEIPILEVTSGQMDLSVLLNLFVEKKIPVKPRSSSKVTNRLHF DSQHSNGLVEASSTRPDEKKLSHPPSVNVSRDSSFDASDDDKEGQVLQADQSNAPEKH EGDNWAPIGWTRISELVQAAPVDAVWSSHQFLFADSEDDFTVADLVAPYWERPAGPIW WCHVSAGHPAVETWLSNAQWLHPAVSLALRDESRLISERMNHLFYEVPVRVAGGLLFE LLGQSVGDPLVEEDDIPIVLRSCQAQNFLELLSIGGYNVPRTVHEVIAQIAFRLSRWD DRLFRKSIFGASDDIELKFMNRVKWSLHARYEIIIELLQHLKGDVARNLLEEIKKSTR EMIEEQEEVRGRLFNIQDVMQSTLRAWLQDKSLTVTHYLAVFGGVGLVLSMIIGLFGI NVDGMPWVKNTPYAFDVFTAILIFLGVVLIVVCLVCLGPRKPAVEEHVEARKCELQEL VKIFQHDPETHARVRKNISRNNLPPTAGDAFREDADYLIIQ" CDS complement(join(591124..591507,591612..591815, 591938..592007,592091..592150,592269..592360, 592451..592639,593536..594198)) /codon_start=1 /locus_tag="TSUD_123580" /note="Tsud_chr3.g08380.1.am.mk" /product="hypothetical protein" /protein_id="GAU22471.1" /transl_table=1 /translation="MSAAEDQSHSSGKNLKPESYKTHHGRDPNTGNDLWTDGLICAFE FVRGKRRHVKSRSSSKFGDRLHFNSHYSKTHVPSNGLMEASSTRPDEKKVSHPSFDDD KEGQIFQVGQSNAPENNEGDHWVPIGWSRISELVQAVQVDAVWSQFEFEDSEDDFTVA DLAAPYWERPAGPIWWCHVSAGHPYVEAWLSNAQWLHPAVSLALRDESRLISERMQHL LYEVPVRVAGGLLFELLGQSVGDPLVEEDDIPIVLRSWQAQNFLVTVMHIKGSVSRIN VLGITEVQELLSTGGYNVARTVHEVIAQLASRLSRWDDRLFRKSIFGTADEIELKFMN RRTHEDLNFFNIILNQEIRKLSAQVIRVKWSLHARDEIVFELLQHLKGNGARNLLEGI KKSTREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGVGVVLTIIT GLFGINVDGIPGAANTPYAFGVFTAILIFLGAVLIVVCLVYLGLKNPIAEEQVEVRKL ELQELVKMFQHDAETHAQVRKNVSRNNLPPTAGDAFRDANYLVIQ" CDS join(601578..601782,602477..602618,602707..602827, 603194..603256,603368..603400) /codon_start=1 /locus_tag="TSUD_123590" /note="Tsud_chr3.g08390.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22472.1" /transl_table=1 /translation="MANNNQNQKPLIYSFISRGTIILAEFTEFTGNFNSIAFQCLQKL PSTNNKFTYECDDHTFNYLIDNGYTYCVVAHESTGRQVPMAFLERVKEDFVSKYGGEK ASTAPPNSLNKEYGPKLKEHMQYCVDHPDEINKLAKVKAQVSEVKGVMMENIEKVLDR GEKIEVLVDKTDNLHHQWMMLNCGLLL" assembly_gap 622589..622949 /estimated_length=361 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS 627437..627958 /codon_start=1 /locus_tag="TSUD_123600" /note="Tsud_chr3.g08400.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22473.1" /transl_table=1 /translation="MRQSRMLACVIQETIGKKLKEKDEEIQRIGKLNWVLQEKVKSLS AENQVWRELAQTNETTANYLRNNLEQVMAHVKEGHRHAAVAEDDAQSSCGSNNNNVAE DGNDTAATTTIGGGQSGGGLVRMCKNCGVKESIVLLLPCRHLCLCNMCGSTVRKCPVC DSGIDASVHVNLS" CDS join(633400..633509,633748..633991) /codon_start=1 /locus_tag="TSUD_123610" /note="Tsud_chr3.g08410.1.am.mk" /product="hypothetical protein" /protein_id="GAU22474.1" /transl_table=1 /translation="MREKLNLIHLRYKRDKLKLKYHYHNLGLFKNNYCLKRGPVVYPD GFGVRPPPVRGPPPVTAQPPIHAPTPFPQLRGATPAAGPPPIRVPFPKSGFSTNEPDF MYFIPNPVMRPSYPK" assembly_gap 634867..634996 /estimated_length=130 /gap_type="within scaffold" /linkage_evidence="paired-ends" CDS complement(join(650833..651193,653940..654700, 655707..656150)) /codon_start=1 /locus_tag="TSUD_123620" /note="Tsud_chr3.g08420.1.am.mkhc" /product="hypothetical protein" /protein_id="GAU22475.1" /transl_table=1 /translation="MEDQDFLGYEAFVNVEEEEQEEDEFCSCCENDEEEEREQDEEED EEWKETEEKVVENLKEELDEFSVRMYFKGLSITGIENSTSGFSGIGVFMERSSKFSPI RVQKRLDFYAEEAMVEYLALMDGLVEALQNKIRRVYAFTDSELLYKITNEKNSDMPLL MALRERILEHANNFETFDLKLIPSIDLEQPLQLAKVAMGLVTFPVTGKISLENCSICC DDKPVPMMITLKCSHTFCSHCLRSYADGKLQCCQVPIRCPQPGCRYCISPPEFKSFLP FTSYESVEKSLSEANIAQSERFYCPFPNCSVLLDPCECLSAMDGSSSQSDNSCIECPV CKRFICMDCGVPWHSSMTCEEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIEL SQGCYHMTCWCGHEFCYSCGAEYRDSQQTCQCAFWDEDSLTNTIQESEQWTWETSMIM DAYSDQERSQLALIQRFLDGGFSLSDHNPYQSPPPQCTESFVDPLKDLHQLPWLERFV SVISDNYYDDYMQ" CDS complement(join(659302..659755,659934..660398, 660642..660808,660944..661073,661155..661509, 661615..661699,661790..661909,662304..662306)) /codon_start=1 /locus_tag="TSUD_123630" /note="Tsud_chr3.g08430.1.au" /product="hypothetical protein" /protein_id="GAU22476.1" /transl_table=1 /translation="MEGDANSKYFHGVMASRRQSNSIVTLVADGQVVEGVSEVRQGDN AALIKPFLLDEIKEAIWDCDSFKCPGLNSTFIALIPKVDSPQKVADFRPIALVNSVYK ILAKVLANRVRRVIGNVVSHSQSAFVKDRQILDGILIANEVVDDAKRNRKDLLMFKVD FEKAYDSVDWGYLEKVMFKMNFPATWCRGLRQGDPLSPFLFLLAAEGLNVMMNSLVSR QLFMPYGIGVHNESMLFGINVNDSWLHEAAVVMRCNYGRLPFLYLGLPIGGDPRKLRF WDPVVSRIRKRRLKEFNFSLLGKWGWRCLEEKDSLWCKVLQAKYGQEGGRLRFGEGVG SHWWRSMNDVRVGAGLGDARWLLDNITRRVGDGCETRFWTDPWLLDSPLQRSFGRLFD LAVDKNISVADMFAAGWDLWGEAWKWRRRLYAWEEELVVECVARLANVVLLPTKANLR HRGIIEDTQMLCPSLCGKVEDSNHLFFQCEVYGRIWHLIIKWLGVESALHGDIDMHSV QFSGLGEFSPSSRKALSIIWSSVLYTIWCDPNRRIFSNESDSMEALVEKVKLQTFWWM KSCYALFDVDYATWRLRPWSTFQAIS" assembly_gap 662745..666578 /estimated_length=3834 /gap_type="within scaffold" /linkage_evidence="paired-ends" CONTIG join(BCLP01005143.1:1..100364,gap(253),BCLP01005144.1:1..132958, gap(345),BCLP01005145.1:1..44082,gap(3800),BCLP01005146.1:1..645, gap(1176),BCLP01005147.1:1..481,gap(1953),BCLP01005148.1:1..5068, gap(300),BCLP01005149.1:1..27141,gap(2178),BCLP01005150.1:1..48939, gap(367),BCLP01005151.1:1..914,gap(2979),BCLP01005152.1:1..17203, gap(3499),BCLP01005153.1:1..19037,gap(126),BCLP01005154.1:1..13174, gap(764),BCLP01005155.1:1..80001,gap(2057),BCLP01005156.1:1..33428, gap(1113),BCLP01005157.1:1..26249,gap(137),BCLP01005158.1:1..1971, gap(1375),BCLP01005159.1:1..1008,gap(100),BCLP01005160.1:1..4201, gap(1968),BCLP01005161.1:1..41234,gap(361),BCLP01005162.1:1..11917, gap(130),BCLP01005163.1:1..27748,gap(3834),BCLP01005164.1:1..1671) //