LOCUS PLYBCG 4697 bp DNA circular VRL 05-FEB-2003 DEFINITION Bovine polyomavirus DNA, complete genome. ACCESSION D13942 D00755 M74843 VERSION D13942.1 KEYWORDS . SOURCE Bovine polyomavirus ORGANISM Epsilonpolyomavirus bovis Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Epsilonpolyomavirus. REFERENCE 1 (bases 1 to 4697) AUTHORS Schuurman,R. TITLE Direct Submission JOURNAL Submitted (29-NOV-1990) to the DDBJ/EMBL/GenBank databases. Contact:Rob Schuurman University of Amsterdam, Academical Medical Center, Department of Virology; 15 Meibergdreef, Amsterdam 1105-AZ, The Netherlands REFERENCE 2 AUTHORS Schuurman,R., Sol,C. and Noordaa,J. TITLE The complete nucleotide sequence of bovine polyomavirus JOURNAL J. Gen. Virol. 71, 1723-1735 (1990) COMMENT The sequence is shown in the sense of the late mRNA molecule. FEATURES Location/Qualifiers source 1..4697 /db_xref="taxon:1891754" /isolation_source="from infected monkey kidney cell cultures" /mol_type="genomic DNA" /organism="Bovine polyomavirus" misc_feature 1..25 /note="large-T antigen binding motif" misc_feature 29..4697 /note="large-T antigen binding motif" misc_feature 58..62 /note="large-T antigen binding motif" rep_origin 64..65 /note="origin of replication" misc_feature 81..98 /note="AT-stretch" misc_feature 108..152 /note="SP-1 binding motifs" CDS 220..576 /codon_start=1 /note="agnogene" /product="agnoprotein" /protein_id="BAA03036.1" /translation="MALQWVWLCLRKSLRNNKLMMCRILIELLKILLDVLDSGDYADG PSDNPGTGIAKEEIVKCIDFLKMLEAGDDDIDKYGFPELLAAHFANCLAVCLKAARES DAMFCCSLEANSSDFN" CDS 618..1679 /codon_start=1 /product="VP2" /protein_id="BAA03037.1" /translation="MGALLTILAEVFELATATGLSAEAILTGEAFTTAELLQAHIANL VEVGELSVAEALAATEVTSEAFEALQSISSVLPTAFIGVAATEGAILGSLITLTATSS ALYPSTWKHSTPSANLNQEMALVPYIGDLDIFFPGAETISRFVYSIDPFRWASYLYNI VGRAVWEHLFRETRRQIAYHTTDIAGRTAQSIHHTIANFLENVRWTVSHLGTNLYSGL HNYYRQLPPLNPPQSRELARRLGVPQPDRQIFEKGEEGMKHPVSAEYVEKYGAPGGAE QRVAPDWLLPLLLGLYGDLTPAWEAEVEEEENEQDEEEYEPPQKRIKRTAKSSSKVNN KRGDRSARSPYRTRQHNHN" CDS 981..1679 /codon_start=1 /product="VP3" /protein_id="BAA03038.1" /translation="MALVPYIGDLDIFFPGAETISRFVYSIDPFRWASYLYNIVGRAV WEHLFRETRRQIAYHTTDIAGRTAQSIHHTIANFLENVRWTVSHLGTNLYSGLHNYYR QLPPLNPPQSRELARRLGVPQPDRQIFEKGEEGMKHPVSAEYVEKYGAPGGAEQRVAP DWLLPLLLGLYGDLTPAWEAEVEEEENEQDEEEYEPPQKRIKRTAKSSSKVNNKRGDR SARSPYRTRQHNHN" CDS 1540..2637 /codon_start=1 /product="VP1" /protein_id="BAA03039.1" /translation="MSRMRKNMNPPKKGLKGQPSPVPKLIIKGGIEVLGLRTGPDSTT TIELFLNPRMGQSTESEYYGFSDNQRGSTSRTDEDLISAELPRYSLGVVQLPLLNEKL TDDVLLMWEAVSCKTEVVGVNTLTTCHGYKKRYSPSAGQGSAMPIEGINYHFFAVGGE PLEIQFICEDFKAPYHPTETIVPPKDKLSNKSQVLDPTLKGILDKDGVYPVECWCPDP SKNENTRYFGTYTGGVSTPPVLQFTNTVTTILLDENGVGPLCKADKLYITAADICGFL TQPNDQQQFRGLPRYMSVTLRKRLVKNPYPIASILTSLFTNSLPPVTSQEMDKQVEEV RIYQGVEGLPGDPDMVRYINKFGQEETCIPK" regulatory complement(2639..2644) /regulatory_class="polyA_signal_sequence" regulatory 2684..2689 /regulatory_class="polyA_signal_sequence" CDS complement(join(2690..4345,4593..4697)) /codon_start=1 /product="large T antigen" /protein_id="BAA03040.1" /translation="MELTSEEYEELRGLLGTPDIGNADTLKKAFLKACKVPEYGTSQW EQWWEEFNQGFDEQDLHCDEELEPSDNEEENPAGSQAPGSQATPPKKPRTSPDFPEVL KEYVSNALFTNRTYNCFIIFTTAEKGKELYPCIQAAYKCTFIALYMYNGDSVLYIITV GKHRVNAMENLCSKKCTVSFLQAKGVLKPQEAYNVCCTFELISQNIQGGLPSSFFNPV QEEEKSVNWKLISEFACSIKCTDPLLLMALYLEFTTAPEACKVCDNPRRLEHRRHHTK DHTLNALLFQDSKTQKTICNQACDTVLAKRRLDMKTLTRNELLVQRWQGLFQEMEDLF GARGEEHLAHRMAAVMWLNALHPNMPDVIFNYIKMVVENKPKQRYLLLKGPVNCGKTT VAAGLIGLCGGAYLNINCPPERLAFELGMAIDQFTVVFEDVKGKKSSKSSLQTGIGFE NLDNLRDHLDGAVPVNLERKHQNKVTQIFPPGIVTCNEYDIPLTVKIRMYQKVELLHN YNLYKSLKNTEEVGKKRYLQSGITWLLLLIYFRSVDDFTEKLQECVVKWKERIETEVG DMWLLTMKENIEQGKNILEK" exon complement(2690..4345) /note="large T antigen" /number=2 CDS complement(join(4252..4502,4574..4697)) /codon_start=1 /product="small t antigen" /protein_id="BAA03041.1" /translation="MELTSEEYEELRGLLGTPDIGNADTLKKAFLKACKVHHPDKGGN EEAMKRLLYLYNKAKIAASATTSQVWYFLIIGYISLKNKNIYLPKIFWLRFQNMAPHS GNSGGKNSIKALMSKICIVMRN" exon complement(4255..4502) /note="small t antigen" /number=2 intron complement(4346..4592) /note="large T antigen" /number=1 intron complement(4503..4573) /note="small t antigen" /number=1 exon complement(4574..4697) /note="small t antigen" /number=1 exon complement(4593..4697) /note="large T antigen" /number=1 BASE COUNT 1344 a 995 c 949 g 1409 t ORIGIN 1 tttcctcttt tagggcgcgc ctcggaggcc tgtccactac ttctgtagaa caggttggag 61 gcttaagcct ccggcctcag ctatatagaa aaaaaattac agggtggctc cgcccagact 121 ccgcccatct ctccgcccca tctctccgcc cagtctccgc ctaagggaaa ccagtcccat 181 ccgcaggagt ccctcaggac aagaaacaat aggaacaaca tggccttaca atgggtgtgg 241 ctgtgtctta gaaaaagttt aagaaacaac aaattaatga tgtgtagaat attgattgaa 301 ctattgaaaa tattgttaga tgttctggac agtggggact atgctgatgg gccctcagat 361 aaccctggta caggtattgc taaggaggag attgtgaaat gcattgactt tcttaagatg 421 ctggaggcag gagatgacga catagataag tatgggtttc ctgagctgct tgcggcacac 481 tttgccaact gtttggcagt ttgtttgaaa gcagcgcggg aaagcgacgc catgttttgc 541 tgttctttgg aagcaaacag ctcagatttt aactaaaggt aggccactaa tgggtttatt 601 ttctaggatg ggacaccatg ggagcccttc tcacaatcct agctgaagtt tttgaattag 661 ctactgctac agggctgtca gctgaagcta tcctcactgg agaggccttc actactgccg 721 aactacttca agcccatatt gcaaatcttg ttgaagttgg tgaattgtct gtagcagagg 781 ccttagcagc tacagaggtt actagtgaag ctttcgaggc cttgcaaagc atatcttctg 841 ttcttcctac agcttttatt ggtgttgctg ctacagaggg agctatactt gggtccctta 901 ttactttaac tgctacttcc tcagcccttt atcccagtac ttggaagcac agcactccta 961 gtgcgaacct taatcaggaa atggctttgg ttccttacat aggggatcta gatatatttt 1021 ttcctggggc agaaactatt tctagatttg tgtacagtat tgatcctttt cgctgggcct 1081 catacctgta taatatagta ggaagagctg tatgggaaca tttatttaga gaaacaagga 1141 gacaaatagc ttatcatact acagatattg ctggaagaac agcacaaagc atacatcata 1201 ctattgctaa ctttttggaa aatgttaggt ggactgtatc tcaccttggg acaaacctgt 1261 actctggttt acataattac tatagacagc tcccccctct aaatccccca cagtccagag 1321 agttagcaag gcgtcttggg gttcctcaac cagatagaca aatatttgaa aaaggagagg 1381 agggaatgaa gcatccagtc tcagcagaat atgtagagaa atatggagct cctggaggtg 1441 cagagcaaag agttgctcct gattggctgc tacctcttct tttaggcctc tacggtgatc 1501 ttacccccgc ctgggaagct gaagtagagg aggaagagaa tgagcaggat gaggaagaat 1561 atgaaccccc ccaaaaaagg attaaaagga cagccaagtc cagttccaaa gttaataata 1621 aaagggggga tagaagtgct aggtctccgt acaggaccag acagcacaac cacaattgag 1681 ctgtttttga acccaagaat gggacaaagc actgagtctg aatattatgg cttcagtgac 1741 aaccagaggg gatcaacctc aagaacagat gaagacctaa ttagtgcaga actgcccaga 1801 tatagcttgg gagtggtaca attgcctttg cttaatgaaa aacttactga tgatgttttg 1861 cttatgtggg aagctgtaag ttgcaaaact gaggtcgttg gtgttaacac tttaacaacc 1921 tgtcatggat ataagaaaag gtattcgccc tctgctggtc aaggctcagc aatgcctata 1981 gagggaataa attaccattt ctttgctgta ggtggcgaac cacttgaaat ccagttcata 2041 tgtgaggatt tcaaagcccc ctatcatccc acagaaacta tagtccctcc caaggataaa 2101 ctcagcaaca aatcccaggt gctagatcct accctcaagg gaattctaga caaagatggt 2161 gtgtatcctg ttgagtgttg gtgtccagat ccaagtaaaa atgaaaacac cagatacttt 2221 ggaacatata caggaggtgt tagcactcca cctgtgctgc agttcacaaa taccgtgaca 2281 accattcttc ttgatgagaa tggcgtaggc ccgctttgta aagctgacaa gctatatatc 2341 acagcagcag acatttgtgg ctttctgact cagccaaatg accaacagca atttagaggc 2401 cttcccaggt acatgtctgt gactctcagg aagagactgg tgaagaaccc ataccccatt 2461 gccagcatac tcacatcttt gtttaccaat tccctgccac ctgttactag ccaagaaatg 2521 gataaacagg ttgaggaggt cagaatttac caaggagttg agggcctacc aggagatcct 2581 gacatggtca ggtacatcaa taagtttgga caagaggaaa cttgtattcc aaaatgactt 2641 tattatggta ctgcttgtta cagttgtaga tcaaagcttt atgaataaat catttttcca 2701 gaatattttt tccttgttca atgttttctt tcatggttaa caaccacata tctcccacct 2761 ctgtctcaat tctctctttc cacttgacta cacattcctg cagtttttct gtgaaatcat 2821 ctacagacct aaagtagatg agtaataaga gccaggtgat tccactctgt aaatatcttt 2881 ttttgcccac ttcctcagta tttttaagac ttttatataa gttataatta tgcagtagtt 2941 ctactttttg atacatacgg attttgactg ttaagggtat gtcatattca ttacaggtaa 3001 caattccagg tgggaagatc tgagtcacct tattttgatg ttttctttca aggtttactg 3061 ggactgcacc atctaaatga tctcttaaat tatctaaatt ttcaaaacca attccagtct 3121 gaagggagga tttactggat ttcttacctt taacatcttc aaacacaact gtaaattgat 3181 caattgccat tcctaattca aatgccagtc tttcaggggg acaatttata tttaaataag 3241 ctcccccaca caggcctatg aggcctgcag caactgtagt tttcccacag tttacaggcc 3301 cctttaagag gagatatctc tgttttggtt tattttcaac caccatcttg atataattaa 3361 agataacatc tggcatattg ggatgtaggg cattgagcca cataactgcc gccattcggt 3421 gggctaaatg ctcctccccc cgagcgccaa acaaatcctc catttcttga aaaaggccct 3481 gccacctttg cactaataat tcatttctag ttaaggtttt catatctaat ctcctttttg 3541 ctaacacagt atcacaggcc tgattacata tggttttctg agttttgctg tcctgaaaca 3601 gtaaagcatt taaggtgtgg tctttggtat ggtgtcttct atgctcaagg cgtctgggat 3661 tgtcacatac tttacatgct tcaggtgcag ttgtaaattc taaatataat gccattaata 3721 aaagggggtc tgtacattta atgctgcaag caaattcaga aatgagtttc caatttacag 3781 acttttcttc ttcttgcaca gggttaaaaa aactacttgg cagacctcct tgtatgtttt 3841 gggagataag ttcaaatgtg cagcaaacat tataggcctc ctgaggtttt agaactccct 3901 tggcttgtag gaagctcaca gtacattttt tactacacag attttccatt gcatttaccc 3961 gatgttttcc aacagtgata atatacagaa cagaatcacc attatacata tataaggcaa 4021 taaatgtaca tttgtaggct gcctggatac aaggatataa ttcttttcct ttctcagcag 4081 tagtaaatat tataaagcaa ttatatgttc tatttgtgaa cagagcattg cttacatatt 4141 ctttcaaaac ctcaggaaag tcaggtgatg ttctaggttt cttgggtggg gtggcttgac 4201 ttcccggggc ctggcttccc gccggatttt cttcctcatt atctgatggc tctaattcct 4261 catcacaatg cagatcttgc tcatcaaagc cttgattgaa ttcttcccac cactgttccc 4321 actgtgaggt gccatattct ggaaccttaa ccagaaaatc ttaggtaagt atatattttt 4381 attttttaag cttatatatc caataattaa gaaataccat acctggctag tagtggcact 4441 tgcagcaatt tttgctttat tatacaaata cagaagtctt ttcattgctt cttcattccc 4501 tcctaaaaat aaaatcagat ttactgcctg taaacaagat ttgcatgtac agatcaatac 4561 taaatatatt tacctttatc tggatgatgc accttgcatg ccttcaggaa tgcctttttc 4621 aaagtatctg cattgccaat atcaggggtt cctaagagcc ccctaagctc ctcatattcc 4681 tcagatgtta attccat //