LOCUS ECORUVC 3255 bp DNA linear BCT 16-FEB-2008 DEFINITION Escherichia coli gene for orf17, orf26, ruvC and orf23 genes. ACCESSION D10165 D90392 VERSION D10165.1 KEYWORDS Holliday junction-specific endonuclease; Holliday structure; endonuclease. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 3255) AUTHORS Takahagi,M. TITLE Direct Submission JOURNAL Submitted (24-APR-1991) to the DDBJ/EMBL/GenBank databases. Contact:Masahiko Takahagi Reseach Institute for Microbiol Diseases,Osaka University; 3-1 Yamadaoka, Suita, Osaka 565, Japan REFERENCE 2 AUTHORS Shinagawa,H., Makino,K., Amemura,M., Kimura,S., Iwasaki,H. and Nakata,A. TITLE Structure and regulation of the Escherichia coli ruv operon involved in DNA repair and recombination JOURNAL J. Bacteriol. 170, 4322-4329 (1988) REFERENCE 3 AUTHORS Benson,F.E., Illing,G.T., Sharples,G.J. and Lloyd,R.G. TITLE Nucleotide sequencing of the ruv region of Escherichia coli K-12 reveals a LexA regulated operon encoding two genes JOURNAL Nucleic Acids Res. 16, 1541-1549 (1988) REFERENCE 4 AUTHORS Takahagi,M., Iwasaki,H., Nakata,A. and Shinagawa,H. TITLE Molecular analysis of the Escherichia coli ruvC gene, which encodes a Holliday junction-specific endonuclease JOURNAL J. Bacteriol. 173, 5747-5753 (1991) COMMENT FEATURES Location/Qualifiers source 1..3255 /db_xref="taxon:562" /map="41 min" /mol_type="genomic DNA" /organism="Escherichia coli" /strain="K-12" regulatory 440..445 /regulatory_class="minus_35_signal" repeat_region 450..481 /rpt_type=inverted /rpt_unit_range=450..463 /rpt_unit_range=468..481 regulatory 463..468 /regulatory_class="minus_10_signal" regulatory 503..506 /regulatory_class="ribosome_binding_site" CDS 511..963 /codon_start=1 /product="Orf17" /protein_id="BAA01029.1" /transl_table=11 /translation="MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVE EGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESW FCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA" regulatory 513..517 /regulatory_class="ribosome_binding_site" CDS 523..963 /codon_start=1 /product="Orf17" /protein_id="BAA01030.1" /transl_table=11 /translation="MYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGET APQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLA LPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA" regulatory 924..929 /regulatory_class="minus_35_signal" regulatory 945..950 /regulatory_class="minus_10_signal" regulatory 980..983 /regulatory_class="ribosome_binding_site" CDS 992..1732 /codon_start=1 /product="Orf26" /protein_id="BAA01031.1" /transl_table=11 /translation="MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPD ANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECL SDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAE DVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMR LIDMLEDCDDVQEVYHNGEISDEVAATL" regulatory 1668..1673 /regulatory_class="minus_35_signal" regulatory 1691..1696 /regulatory_class="minus_10_signal" repeat_region 1704..1737 /rpt_type=direct /rpt_unit_range=1704..1715 /rpt_unit_range=1726..1737 regulatory 1756..1759 /regulatory_class="ribosome_binding_site" CDS 1767..2288 /codon_start=1 /function="endonuclease" /gene="ruvC" /product="RuvC" /protein_id="BAA01032.1" /transl_table=11 /translation="MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQM SESRLNLARGRLR" repeat_region 1820..1864 /rpt_type=inverted /rpt_unit_range=1820..1834 /rpt_unit_range=1850..1864 repeat_region 2288..2329 /rpt_type=inverted /rpt_unit_range=2288..2305 /rpt_unit_range=2311..2329 CDS complement(2290..2892) /codon_start=1 /product="Orf23" /protein_id="BAA01033.1" /transl_table=11 /translation="MNINYPAEYEIGDIVFTCIGAALFGQISAASNCWSNHVGIIIGH NGEDFLVAESRVPLSTITTLSRFIKRSSNQRYAIKRLDAGLTERQKQRIVEQVPSRLR KLYHTGFKYESSRQFCSKFVFDIYKEALCIPVGEIETFGELLNSNPNAKLTFWKFWFL GSIPWERKTVTPASLWHHPGLVLIHAEGVETPQPELTEAV" regulatory complement(2901..2903) /regulatory_class="ribosome_binding_site" regulatory complement(3041..3046) /regulatory_class="minus_10_signal" regulatory complement(3065..3070) /regulatory_class="minus_35_signal" regulatory 3084..3089 /regulatory_class="minus_35_signal" regulatory 3089..3094 /regulatory_class="minus_35_signal" regulatory 3100..3115 /note="SOS box (LexA protein-binding sequence)" /regulatory_class="other" regulatory 3105..3110 /regulatory_class="minus_10_signal" regulatory 3113..3118 /regulatory_class="minus_10_signal" regulatory 3156..3160 /regulatory_class="ribosome_binding_site" CDS 3167..>3255 /codon_start=1 /gene="ruvA" /product="RuvA" /protein_id="BAA01034.1" /transl_table=11 /translation="MIGRLRGIIIEKQPPLVLIEVGGVGYEVH" BASE COUNT 859 a 752 c 857 g 787 t ORIGIN 1 gaactgaaag ctgcaccgga aaatgcggtg gcgaacgctt acgatatggt catcaatggt 61 tacgaagtgg gcggtggttc agtacgtatc cataatggtg atatgcagca gacggtgttt 121 ggtattctgg gtatcaacga agaggaacag cgcgagaaat tcggcttcct gctcgacgct 181 ctgaaatacg gtactccgcc gcacgcaggt ctggcattcg gtcttgaccg tctgaccatg 241 ctgctgaccg gcaccgacaa tatccgtgac gttatcgcct tcccgaaaac cacggcggca 301 gcgtgtctga tgactgaagc accgagcttt gctaacccga ctgcactggc tgagctgagc 361 attcaggttg tgaagaaggc tgagaataac tgatatgact caaatacacg aaatcattcg 421 cgttgcatcg aggcggcaac tgagtgaact cccatgagca tagataacta tgtgaatggg 481 atgagcgaag gcagtcaacg aagaggcagc gtgaaggata aagtgtataa gcgtcccgtt 541 tcgatcttag tggtcatcta cgcacaagat acgaaacggg tgctgatgtt gcagcggcgt 601 gacgatcccg atttctggca gtcggtaacc ggcagcgtgg aagagggtga aaccgcgccg 661 caagctgcca tgcgcgaagt aaaggaagag gtcaccattg atgttgtcgc tgaacaactg 721 accttaattg actgtcagcg cacggtagag tttgaaattt tttcacattt acgtcatcgc 781 tatgcgccgg gcgtgacgcg taatacggaa tcatggttct gtcttgcgct tccgcacgag 841 cggcagatcg ttttcactga acatctggct tacaagtggc ttgatgcgcc tgctgcggcg 901 gcgctcacta agtcctggag caaccggcag gcgattgaac agtttgtaat taacgctgcc 961 tgaacaggca gggctatctg gagatatttt tatggcaggt catagtaaat gggccaacac 1021 cagacatcgt aaagctgcgc aggatgctaa gcgcggtaaa atcttcacta aaatcattcg 1081 tgagctggta accgcggcta agctgggcgg tggcgatccg gacgctaacc cgcgtctgcg 1141 tgcggcggtg gataaagcac tgtctaacaa catgacccgt gacacactga accgcgcaat 1201 tgcacgtggt gtgggcggtg atgatgatgc aaacatggaa accatcatct acgaaggtta 1261 cggtcctggc ggcacggcaa tcatgattga atgtctgtct gacaaccgca accgtaccgt 1321 tgctgaagtg cgtcatgcat ttagcaaatg tggcggtaac ctcggtactg atggttccgt 1381 tgcctatctg ttcagcaaaa aaggcgtgat ctccttcgag aaaggcgatg aagacaccat 1441 catggaagca gcactggaag caggtgctga agacgttgtg acctatgatg acggcgcgat 1501 tgatgtctac actgcatggg aagaaatggg taaagtgcgc gacgctctgg aagcggcagg 1561 tctgaaagca gacagcgcgg aagtttccat gatcccgtct accaaagctg atatggatgc 1621 agaaaccgca ccgaaactga tgcgtctgat cgatatgctg gaagattgcg acgacgtgca 1681 ggaagtttac cataacggtg aaatctctga tgaggtcgca gcgactctct gatgaggcct 1741 gctaaacagc aaaacggaga cgcgtgatgg ctattattct cggcattgat ccgggttcgc 1801 gcgtgaccgg ctacggcgtc atccgccagg taggtaggca actgtcctac ctgggtagcg 1861 gatgcatccg caccaaagtg gatgatttac cgtctcgtct gaaactcatc tatgcgggcg 1921 tgacggaaat catcacccag ttccagcctg attatttcgc cattgaacaa gtctttatgg 1981 caaagaacgc tgactcagcc ctgaaactgg gccaggcgcg cggcgtggcg attgtggcgg 2041 cggtgaatca ggagttgcca gtatttgaat acgcggcacg tcaggtaaag caaacggtgg 2101 taggtattgg cagtgccgaa aaaagccagg tgcagcatat ggtccgcacc ttgctgaaac 2161 tgcccgctaa tccacaggcg gatgccgccg atgcgctggc gattgctatc acccactgcc 2221 acgttagtca gaatgcgatg cagatgagcg aatcgcggct gaacctggcg agagggcgac 2281 tgcgttaagt tataccgcct cggtcagttc cggctgaggc gtttccactc cctccgcatg 2341 aatcaacacc aaacccggat gatgccacaa actggctggc gtgacggttt tacgctccca 2401 cggaatagaa cccaggaacc agaatttcca gaaagtgagt tttgcattcg gattgctatt 2461 taacaattct ccaaacgtct ctatttcacc caccggaata catagcgctt ctttataaat 2521 atcaaaaaca aattttgaac agaactggcg cgaagattcg tatttaaaac cggtgtggta 2581 aagtttgcgt agccgggagg gaacctgttc aacaattcgt tgtttttgtc gttctgtcag 2641 cccagcgtct aatcgcttta tagcatagcg ttgattagac gaacgtttaa taaaacgaga 2701 tagcgtggtg atggttgaaa ggggaacccg gctttctgca accaggaagt cttcaccgtt 2761 atgaccgata atgatcccga cgtgattact ccagcaattt gatgcagctg atatttgacc 2821 aaataaggca gcacctatac atgtaaagac gatatctcca atttcatatt cagcagggta 2881 attaatattc acgttgtcat tccattgaaa tagatacaaa tatacgtaat agcataaaaa 2941 atttattttt tcaggaggcg caatgtatat ttttattacg catttcttca ctgaatatgt 3001 aatattaaaa tatttgcttc caatataacc tgtagaataa attatactgt gccatttttc 3061 agttcatcga gacacctcgc aagttttctt catccttcgc tggatatcta tccagcattt 3121 ttttatcata cagcattatc tttgattcat tacgcaggag cgtcatgtga taggcagact 3181 cagaggcatc atcattgaaa aacaaccccc gctggtgtta attgaagtgg gcggcgtagg 3241 ctatgaagtg catat //