LOCUS CY112249 1735 bp cRNA linear VRL 03-APR-2012 DEFINITION Influenza A virus (A/Hong Kong/1/1968(H3N2)) hemagglutinin (HA) gene, complete cds. ACCESSION CY112249 VERSION CY112249.1 KEYWORDS STANDARD_DRAFT; VIRUS_AMBIGUITY. SOURCE Influenza A virus (A/Hong Kong/1/1968(H3N2)) ORGANISM Influenza A virus (A/Hong Kong/1/1968(H3N2)) Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus influenzae. REFERENCE 1 (bases 1 to 1735) AUTHORS Wentworth,D.E., Dugan,V., Halpin,R., Lin,X., Bera,J., Ghedin,E., Fedorova,N., Overton,L., Tsitrin,T., Stockwell,T., Amedeo,P., Bishop,B., Chen,H., Edworthy,P., Gupta,N., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Westgeest,K.B., van Beek,R., Bestebroer,T.M., de Jong,J.C., Rimmelzwaan,G.F., Osterhaus,A.D.M.E., Fouchier,R.A.M., Bao,Y., Sanders,R., Dernovoy,D., Kiryutin,B., Lipman,D.J. and Tatusova,T. TITLE The NIAID Influenza Genome Sequencing Project JOURNAL Unpublished REFERENCE 2 (bases 1 to 1735) CONSRTM The NIAID Influenza Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (03-APR-2012) on behalf of JCVI/Erasmus Medical College/NCBI, National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT This influenza isolate was sequenced as part of the NIAID Genome Sequencing Center Influenza Genome Sequencing Project at the J. Craig Venter Institute. This sample is being submitted as a draft sequence because after two rounds of targeted finishing some or all segments do not meet either NCBI or J. Craig Venter Institute standards of completeness due to low coverage, low quality, ambiguities, frameshifts, gaps, or other problems. This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Sequencing Centers for Infectious Diseases (GSCID) program. FEATURES Location/Qualifiers source 1..1735 /organism="Influenza A virus (A/Hong Kong/1/1968(H3N2))" /mol_type="viral cRNA" /strain="A/Hong Kong/1/1968" /serotype="H3N2" /host="Homo sapiens" /bio_material="CEIRS#CIP047HK168#" /db_xref="taxon:506350" /segment="4" /lab_host="xtMK3 MDCK1 passage(s)" /geo_loc_name="Hong Kong" /collection_date="1968" misc_feature 1..1735 /db_xref="IRD:NIGSP_CEIRS_CIP047_RFH3_00003.HA" gene 15..1715 /gene="HA" CDS 15..1715 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="AFG71887.1" /translation="MKTIIALSYIFCLALGQDLPGNDNSTATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDL FVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPG XGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRV TVSTRRSQQTIIPNIGSRPWVRGMSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKM RTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLAT GMRNVPEKQTRGLFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQ INGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIESIRNGTYDHDVYR DEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVVLLGFIMWACQRGNIRCNICI " sig_peptide 15..62 /gene="HA" mat_peptide 63..1049 /gene="HA" /product="HA1" mat_peptide 1050..1712 /gene="HA" /product="HA2" BASE COUNT 554 a 353 c 409 g 418 t ORIGIN 1 taattctatt aatcatgaag accatcattg ctttgagcta cattttctgt ctggctctcg 61 gccaagacct tccaggaaat gacaacagca cagcaacgct gtgcctggga catcatgcgg 121 tgccaaacgg aacactagtg aaaacaatca cagatgatca gattgaagtg actaatgcta 181 ctgagctagt tcagagctcc tcaacgggga aaatatgcaa caatcctcat cgaatccttg 241 atggaataga ctgcacactg atagatgctc tattggggga ccctcattgt gatgtttttc 301 aaaatgagac atgggacctt ttcgttgaac gcagcaaagc tttcagcaac tgttaccctt 361 atgatgtgcc agattatgcc tcccttaggt cactagttgc ctcgtcaggc actctggagt 421 ttatcactga gggtttcact tggactgggg tcactcagaa tgggggaagc aatgcttgca 481 aaaggggacc tggtakcggt tttttcagta gactgaactg gttgaccaaa tcaggaagca 541 catatccagt gctgaacgtg actatgccaa acaatgacaa ttttgacaaa ctatacattt 601 ggggggttca ccacccgagc acgaaccaag aacaaaccag cctgtatgtt caagcatcag 661 ggagagtcac agtctctacc aggagaagcc agcaaactat aatcccgaat atcgggtcca 721 gaccctgggt aaggggtatg tctagtagaa taagcatcta ttggacaata gttaagccgg 781 gagacgtact ggtaattaat agtaatggga acctaatcgc tcctcggggt tatttcaaaa 841 tgcgcactgg gaaaagctca ataatgaggt cagatgcacc tattgatacc tgtatttctg 901 aatgcatcac tccaaatgga agcattccca atgacaagcc ctttcaaaac gtaaacaaga 961 tcacatatgg agcatgcccc aagtatgtta agcaaaacac cctgaagttg gcaacaggga 1021 tgcggaatgt accagagaaa caaactagag gcctattcgg cgcaatagca ggtttcatag 1081 aaaatggttg ggagggaatg atagacggtt ggtacggttt caggcatcaa aattctgagg 1141 gcacaggaca agcagcagat cttaaaagca ctcaagcagc catcgaccaa atcaatggga 1201 aattgaacag ggtaatcgag aagacgaacg agaaattcca tcaaatcgaa aaggaattct 1261 cagaagtaga agggagaatt caggacctcg agaaatacgt tgaagacact aaaatagatc 1321 tctggtctta caatgcggag cttcttgtcg ctctggagaa tcaacataca attgacctga 1381 ctgactcgga aatgaacaag ctgtttgaaa aaacaaggag gcaactgagg gaaaatgctg 1441 aagacatggg caatggttgc ttcaaaatat accacaaatg tgacaacgct tgcatagagt 1501 caatcagaaa tgggacttat gaccatgatg tatacagaga cgaagcatta aacaaccggt 1561 ttcagatcaa aggtgttgaa ctgaagtctg gatacaaaga ctggatcctg tggatttcct 1621 ttgccatatc atgctttttg ctttgtgttg ttttgctggg gttcatcatg tgggcctgcc 1681 agagaggcaa cattaggtgc aacatttgca tttgagtgta ttagtaatta aaaac //