LOCUS       CY031184                 829 bp    cRNA    linear   VRL 17-APR-2008
DEFINITION  Influenza A virus (A/duck/Vietnam/942A/2004(H5N1)) segment 8,
            complete sequence.
ACCESSION   CY031184
VERSION     CY031184.1
KEYWORDS    .
SOURCE      Influenza A virus (A/duck/Vietnam/942A/2004(H5N1))
  ORGANISM  Influenza A virus (A/duck/Vietnam/942A/2004(H5N1))
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Insthoviricetes; Articulavirales;
            Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
            influenzae.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Spiro,D., Halpin,R., Boyne,A., Bera,J., Ghedin,E., Hostetler,J.,
            Fedorova,N., Kim,M., Zaborsky,J., Overton,L., Djuric,K.,
            Sarmiento,M., Sitz,J., Katzel,D., Halpin,K., Stevens,V.,
            Selleck,P., Axel,A., Bruce,K., Johnson,M., Heine,H., Hoa,D.M.,
            Long,N.T., Vu,P.P., Bao,Y., Bolotov,P., Dernovoy,D., Kiryutin,B.,
            Lipman,D.J. and Tatusova,T.
  TITLE     The NIAID Influenza Genome Sequencing Project
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 829)
  CONSRTM   The NIAID Influenza Genome Sequencing Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (17-APR-2008) on behalf of JCVI/Australian Animal Healh
            Laboratory/NCBI, National Center for Biotechnology Information,
            NIH, Bethesda, MD 20894, USA
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Influenza A virus
                     (A/duck/Vietnam/942A/2004(H5N1))"
                     /mol_type="viral cRNA"
                     /strain="A/duck/Vietnam/942A/2004"
                     /serotype="H5N1"
                     /host="Duck"
                     /db_xref="taxon:479008"
                     /segment="8"
                     /lab_host="egg 2 passage(s)"
                     /geo_loc_name="Viet Nam"
                     /collection_date="2004"
     gene            7..829
                     /gene="NS2"
     CDS             join(7..36,494..829)
                     /gene="NS2"
                     /codon_start=1
                     /product="nonstructural protein 2"
                     /protein_id="ACC63280.1"
                     /translation="MDSNTVSSFQDILMRMSKMQLASSSEDLNGMITQFESLKLYRDS
                     LGEAVMRMGDFHSLQIRNGKWREQLSQKFEEIRWLIEEVRHRLKITENSFEQITFMQA
                     LQLLLEVEQEIRAFSFQLI"
     gene            7..684
                     /gene="NS1"
     CDS             7..684
                     /gene="NS1"
                     /codon_start=1
                     /product="nonstructural protein 1"
                     /protein_id="ACC63279.1"
                     /translation="MDSNTVSSFQVDCFLWHVRKRFADQELGDAPFLDRLRRDQKSLR
                     GRGNTLGLDIETATRAGKQIVERTLEEESDKALKMPASRYLTDMTLEEMSRDWFMLMP
                     KQKVAGSLCIKMDQAIMDKTIILKANFSVIFDRLETLILLRAFTEEGAIVGEISPLPS
                     LPGHTDEDVKNAIGVLIGGLEWNDNTVRVTETIQRFAWRSSDEDGRLPLPPNQKRKMA
                     RTIESEV"
BASE COUNT          270 a          171 c          196 g          192 t
ORIGIN      
        1 aacataatgg attccaacac tgtgtcaagc tttcaggtag actgctttct ttggcatgtc
       61 cgcaaacgat ttgcagacca agaactgggt gatgccccat tccttgaccg gcttcgccga
      121 gatcagaagt ccctaagagg aagaggcaac actcttggtc tggacatcga aacagctact
      181 cgcgcaggaa agcaaatagt ggagcggact ctggaggagg agtctgataa agcacttaaa
      241 atgccggctt cacgctacct aactgacatg actctcgaag aaatgtcaag ggactggttc
      301 atgctcatgc ccaagcagaa agtggcaggt tccctttgca tcaaaatgga ccaggcaata
      361 atggataaaa ccatcatatt gaaagcaaac ttcagtgtga tttttgaccg gttggaaacc
      421 ctaatactac ttagagcttt cacagaagaa ggagcaatcg tgggagaaat ctcaccatta
      481 ccttctcttc caggacatac tgatgaggat gtcaaaaatg caattggcgt cctcatcgga
      541 ggacttgaat ggaatgataa cacagttcga gtcactgaaa ctatacagag attcgcttgg
      601 agaagcagtg atgaggatgg gagacttcca ctccctccaa atcagaaacg gaaaatggcg
      661 agaacaattg agtcagaagt ttgaagaaat aaggtggctg attgaagaag taagacatag
      721 attgaaaatt acagaaaaca gcttcgaaca gataacgttt atgcaagcct tacaactact
      781 gcttgaagtg gagcaagaga taagagcctt ctcgtttcag cttatttaa
//