LOCUS CU914140 9304 bp DNA linear VRT 13-DEC-2012 DEFINITION Zebrafish DNA sequence from clone CH1073-389C18 in linkage group 6. ACCESSION CU914140 VERSION CU914140.5 KEYWORDS GAP_CLOSURE; HTG. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio. REFERENCE 1 (bases 1 to 9304) AUTHORS Griffiths G. CONSRTM Genome Reference Consortium JOURNAL Submitted (13-DEC-2012) to the INSDC. Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail enquiries: grc-help@sanger.ac.uk Clone requests: http://www.sanger.ac.uk/Projects/D_rerio/faqs.shtml#dataeight COMMENT -------------- Genome Center Center: Wellcome Trust Sanger Institute Center code: SC Web site: http://www.sanger.ac.uk Contact: grc-help@sanger.ac.uk -------------- This sequence was finished as follows unless otherwise noted: all regions were either double-stranded or sequenced with an alternate chemistry or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by at least one subclone; and the assembly was confirmed by restriction digest, except on the rare occasion of the clone being a YAC. Clone-derived Zebrafish pUC subclones occasionally display inconsistency over the length of mononucleotide A/T runs and conserved TA repeats. Where this is found the longest good quality representation will be submitted. Any regions longer than 1kb tagged as misc-feature "unsure" are part of a tandem repeat of more than 10kb in length where it has not been possible to anchor the base differences between repeat copies. The region has been built up based on the repeat element to match the total size of repeat indicated by restriction digest, but repeat copies may not be in the correct order and the usual finishing criteria may not apply. CH1073-389C18 is from a Zebrafish Doubled haploid fosmid library VECTOR: pCC1FOS-CHA_PmII FEATURES Location/Qualifiers source 1..9304 /organism="Danio rerio" /chromosome="6" /mol_type="genomic DNA" /clone_lib="CHORI-1073" /clone="CH1073-389C18" /db_xref="taxon:7955" misc_feature 5226..5226 /note="Tandem repeat. Forced join. Gap size estimated to be approximately 520bp by restriction digest data." misc_feature 5227..5532 /note="Single clone region." BASE COUNT 2782 a 2900 c 2025 g 1597 t ORIGIN 1 tgtgagagtt gcagagagcg acctgccggc tagccaacag tgtacatgac ctacagcaca 61 ctactgagga acacatcagc ttatgaaata ccaactcttg gacgggttct gaagagcaag 121 actcctgcat ggtgtcgaat aaacaaaaac taaacacagc tactggagta aagccagctc 181 aggtgcgaca cacacacaca cacacacctc tcgcaaaact cgctcatcac gccccagtac 241 ggctccggca cagcgaacca ctcgcagtcg cccggtccga tgttgatgtt gacagcgcag 301 aagttgttgt gctcctgatg acctgaaggt gaacacacag gtgaggtcag gtgaggtcag 361 gtcatgtatg gtgtggtgtg tgtctgcgtt gtggctcacc tggagtcctg ctgcccggca 421 ccttcatgca gagctgcact gtgttcatgc ccaggattct gtggcccacg tgactcagca 481 gattcccagc cgacaccaca cgcgcaaacg ctggcagctt actgagctcc tgcagctgca 541 gcttccacct gcagggggca cacacacaca cacacacaca ttacagacag agtgtgtaag 601 aggcacgggt tattgaggcc tgttcacaag cacaataact ataaacatat cactaaacta 661 tctcagagaa acgctaacga tcagtgtgtg tgtgtacagt tagacgtgta ttctctgtag 721 agtccagcag gtgtcagtct cagtgtgctg cagcatctga acactattga tctgactcaa 781 tcaatcaggc cgtttagcaa ctgcagttag ttctccatca ttcacacaca cacacacacg 841 cacgcacaca cacacacaca cacacacaca cacacacaca cacacacaca cacacacaca 901 cacacacaca cacacacaca cacacacaca cacacacaca aacacacaaa cacacaaact 961 ctggattctg acactggctg tcagtgtttc ctccaacagc tggttaactt ctcctgacag 1021 agcttatcgc tcctctctgt gtgtgtgtgt gtgtgtgtgg ctgtagtgct gctgtgaact 1081 caaacattac tactatacct gcaccctcat ctttatagtg atcctgcctg gtgtaagcag 1141 gcctgtactc cactgttaca gcagaaggtg acgtacgagg tccccacaac ttacaaaaac 1201 aagcgcacgt gtgtgtgtgt gtgtgtgtac ggctgtatgt gtgtgttaaa gagactaaac 1261 attctcagat cctcttttgc tgcattgaca cacacacaca cacacacaca cgcacacgca 1321 cacgcacacg cacacgcaca cacacacaca cgcgcgcaca cgcacgcaca cgcacgcaca 1381 cgcacgcaaa cacacacgca cactcacttc ttttcgtcgg agacgtcgat gttcatccca 1441 aacttcacct gtttgaaagg gcctttcctc ctcctgcaca cactgagcag aaaaaaacag 1501 gtgaacatca gcgcagacag agctcatcac acacactctc tcacacacac ctttccgaag 1561 acgcaatctc tgagtctgaa agctccttct ggcccttctt ctcgttctct tcctgaaaca 1621 cacacacaca cacacacaca cacacacata caattagcac aaacactcca ctgaggcagt 1681 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtctgtac ccgcagtgac tcctggaagg 1741 acgccgcctg gtattgtgcg tatttggcga tggtggtgtg tgaccttgtg ctctcgcagc 1801 gccactgctt gcgtgtccca ctggcgtccc agttctcatc agccggttgg ctcagctgcg 1861 tgcgcacttc caccaggtgc tccgggttca tatccaccag cgtcttggtg gagaacaggc 1921 ccagatctgc agacacacac acacacactg ctctgttagt gccctaacac agtaccgtag 1981 agatgtaata tagatgatgg tcagagaact cctccacaac agagaactcc tccacaacag 2041 agaactcctc cacaacagag aactcctcca caacagagaa ctcctccaca acagagaact 2101 cctccacaac agagaattcc tccacaacgg tcagagaact cctccacaac agagaactcc 2161 tccacaacga acagagaact cctccacaac agagaactcc tccacaacag agaactcctc 2221 cacaacagag aactcctcca caacagagaa ctcctccaca acagagaact cctccacaac 2281 agagaactcc tccacaacag agaactcctc cacaacgaac agagaattcc tccacaacgg 2341 tcagagaact cctccacaac agagaactcc tccacaacag agaactcctc cacaacgaac 2401 agagaactcc tccacaacga acagagaact cctccacaac gaacagagaa ctcctccaca 2461 acggtcagag aactcctcca caacgaacag agaactcctc cacaacggtc agagaactcc 2521 tccacaacgg tcagagaact cctccacaac agagaactcc tccacaacga acagagaatt 2581 cctccacaac ggtcagagaa ctcctccaca acagagaact cctccacaac agagaattcc 2641 tccacaacgg tcagagaact cctccacaac agagaactcc tccacaacga acagagaact 2701 cctccacaac agagaactcc tccacaacag agaactcctc cacaacagag aactcctcca 2761 caacggtcag agaactcctc cacaacagag aactcctcca caacagagaa ctcctccaca 2821 acagagaact cctccacaac gaacagagaa ctcctccaca acggtcagag aactcctcca 2881 caatggtcag agaactcctc cacaacagag aactcctcca caacagagaa ctccacaatg 2941 gtcagagaac tcctccacaa cggtcagaga actcctccac aacgataaga gaacccctcc 3001 acaacggtca gagaactcct ccacaacggt cagagaactc ctccacaacg gtcagagaac 3061 tcctccacaa cggtcagaga actcctccac aacagagaac tcctccacaa cagagaactc 3121 ctccacaacg gtcagagaac tcctccacaa cagagaactc ctccacaaca gagaactcct 3181 ccacaatggt cagagaactc ctccacaaca gagaactcct ccacaacaga gaactcctcc 3241 acaacggtca gagaactcct ccacaacaga gaactcctcc acaacggtca gagaactcct 3301 ccacaacaga gaactcctcc acaatggtca gagaactcct ccacaacggt cagagaactc 3361 ctccacaacg gtcagagaac tcctccacaa cggtcagaga actcctccac aacggtcaga 3421 aaactcctcc acaacggtca gagaactcct ccacaacaga gaactcctcc acaacagaga 3481 actcctccac aacggtcaga gaactcctcc acaacggtca gagaactcct ccacaacaga 3541 gaactcctcc acaacagaga actcctccac aacggtcaga gaactcctcc acaacagaga 3601 actcctccac aacggtcaga gaactcctcc acaacggtca gagaactcct ccacaacggt 3661 cagagaactc ctccacgaga actcctccac aacggtcaga gaactcctcc acaacggtca 3721 gagaactcct ccacaacaga gaactcctcc acaacggtca gagaactcct ccacaacaga 3781 gaactcctcc acaacagaga actcctccac aacggtcaga gaactcctcc acaacagaga 3841 actcctccac aacggtcaga gaactcctcc acaacggtca gagaactcct ccacaacggt 3901 cagagaactc ctccacaacg gtcagagaac tcctccacaa cggtcagaga actcctccac 3961 aacggtcaga gaactcctcc acaacggtca gagaactcct ccacaacggt cagagaactc 4021 ctccacaaca gagaactcct ccacaacaga gaactcctcc acaacggaca gagatttcct 4081 ccacaacaga gaactcctcc acaacggaca gagaactcct ccacaacaga gaactcctcc 4141 acaacggaca gagaactcct ccacaacaga gaactcctcc acaacggaca gagaactcca 4201 ccacaacaga gaactcctcc acaacggtca gagaactcct ccacaacaga gaactcctcc 4261 acaacggtca gagaactcct tcacaacaga gaacgcctcc acaacggtca gagaactcct 4321 ccacaacaga gaactcctcc acaacagaga actcctccac aacggtcaga gaactcctcc 4381 acaacagaga actcctccac aatggtcaga gaactcctcc acaatggtca gagaactcct 4441 ccacaacggt cagagaactc ctccacaacg gtcagagaac tcctccacaa tggtcagaga 4501 actcctccac aacggtcaga gaactcctcc acaacggtca gagaactcct ccacaacggt 4561 cagagaactc ctccacaacg gtcagagaac tcctccacaa cggtcagaga actcctccac 4621 aacagagaac tcctccacaa cagagaactc ctccacaatg gtcagagaac tcctccacaa 4681 cggtcagaga actcctccac aacggtcaga gaactcctcc acaacagaga actcctccac 4741 aacagagaac tcctccacaa cggtcagaga actcctccac aacagagaac tcctccacaa 4801 tggtcagaga actcctccac aatggtcaga gaactcctcc acaacggtca gagaactcct 4861 ccacaacggt cagagaactc ctccacaacg gtcagagaac tcctccacaa cagagaactc 4921 ctccacaaca gagaactcct ccacaacgga cagagaactc ctccacaacg gacagagaac 4981 tcctccacaa cggacagaga actcctccac aacagagaac tcctccacaa cggacagaga 5041 actcctccac aacagagaac tcctccacaa cggacagaga actccaccac aacagagaac 5101 tcctccacaa cggtcagaga actccttcac aacagagaac gcctccacaa cggtcagaga 5161 actcctccac aacggtcaga gaactcctcc acaacagaga actcctccac aacggtcaga 5221 gaactcctcc acaacggtca gagaactcct ccacaacggt cagagaactc ctccacaacg 5281 gtcagagaac tcctccacaa cggtcagaga actcctccac aacagagaac tcctccacaa 5341 cagagaactc ctccacaacg gtcagagaac tcctccacaa cggtcagaga actcctccac 5401 aacggacaga gaactcctcc acaacagaga actcctccac aacggacaga gaactccacc 5461 acaacagaga actcctccac aacggtcaga gaactccttc acaacagaga acgcctccac 5521 aacggtcaga gaactcctcc acaacggtca gagaactcct ccacaacggt cagagaactc 5581 ctccacaacg gtcagagaac tcctccacaa cagagaactc ctccacaaca gagaacgcct 5641 ccacaacggt cagagaactc ctccacaacg gtcagagaac tcctccacaa cagagaactc 5701 ctccacaacg gtcagagaac tcctccacaa cggtcagaga actcctccac aacggtcaga 5761 gaactcctcc acaacggtca gagaactcct ccacaacaga gaactcctcc acaacagaga 5821 actcctccac aacggtcaga gaactcctcc acaacagaga actcctccac aatggtcaga 5881 gaactcctcc acaacagaga actcctccac aatggtcaga gaactcctcc acaacggtca 5941 gagaactcct ccacaacggt cagagaactc ctccacaacg gtcagagaac tcctccacaa 6001 cggtcagaga actcctccac aacagagaac tcctccacaa tggtcagaga actcctccac 6061 aacagagaac tcctccacaa tggtcagaga acccctccac aatggtcaga gaacccctcc 6121 acaacggtca gagaactcct ccacaacaga gaactcctcc acaatggtca gagaactcct 6181 ccacaacaga gaactcctcc acaatggtca gagaacccct ccacaatggt cagagaactc 6241 ctccacaacg gtcagagaac tcctccacaa cggtcagaga actcctccac aacggtcaga 6301 gaactcctcc acaacggtca gagaactcct ccacaatggt cagagaactc ctccacagcg 6361 gtcagagaac tcctccacaa cggtcagaga actcctccac aatggtcaga gaactcctcc 6421 acaacggtca gagaactcca ccacaacggt cagagaactc ctccacaatg gtcagagaac 6481 tcctccacag cggtcagaga actcctccac aacagagaac tcctccacaa cggtcagaga 6541 actcctccac aatggtcaga gaactcctcc acaatggtca gagaactcct ccacaacggt 6601 cagagaactc ctccacaatg gtcagagaac tcctccacaa tggtcagaga actcctccac 6661 aacggtcaga gaactcctct acattaaact tgactctaca tttattcgga aacctgcggg 6721 tgtcctttag ttctctgcag taatccacag gaatgcaagg ttcaatgtgt tttctagttt 6781 ccatggaaac tgcagagaat caggacacgc ccaccatgag tgtgagagac agtgtatata 6841 tgtgtgtgag tgtgggagat atacagtgtg tgtgtgcatg tgtgagagaa agtgtgtgtg 6901 tgtgtgtaca agcatttgtg tgcatgtgag agagaaagag tatgcatgtg tgtgtttgtg 6961 tgtgtgtgtg tgtgtacacg tatgtgtaga gagagagaga gtgtgtgtgt gtgtgtgtgt 7021 gtgtgtgtgt gtgtgtgcgc gcgcttaccc agtttcaggg ctccggccag gccgcgaatg 7081 acagtcacag ggtttgaggg gttggtgcag aactggtgaa gcggcgggaa gaatgcgtct 7141 cgtttattct ccagctgaaa taaacacaca ttggtgaatg tgcaagcaca cacaaacaca 7201 cacacaaagg ttagaggggt tcgaggtgtg tatgcagcgg gcattacgca catatatgct 7261 gggtgtgggc gggttgagtt tgtctttatc cagtggtggt gcaggaggcg gagggaggcg 7321 cggtggcgga caacggttca gcaggagact acagctcgac agcccattcc tgcccagact 7381 cctgcgcaca cacacacaca gacgcacaca cgcacacaca cacacacaca cacacacaca 7441 cacacacaca cacacacaca actgctgatt ctgcagacta cacattcatc ataatcctaa 7501 gatgtgttcc ttccacaatg tgccacgcac gcatgcagtt ttgaattaca aacttccaat 7561 atacttccaa ttgtccagtg tgcaccgtgt cgtggcgctg agtggcacat ctggtgtttg 7621 acccgctcta ctctcctgct gtctataatt ctgctcccac cttttccttc actaaacctc 7681 taaaataaag catgtctatc ctgcatggag aaacaagctg atcttcacca cacacacaca 7741 cacacacaca cacacacaca cacacacagc tcagcagtat gttgtacaga cagcagtata 7801 ccgcagtacc tgcaggcctt gagtgcgtca gtggatgtgg ggtagatgga gatgctggca 7861 gaccggtgtg ctgcagacga tgtgatgctc tgctctggct ccagcttcag cgggctccga 7921 gagtcctcag agcagccgtt aacggtgact ggggcctgca agggcctgag gggggtggtg 7981 gggtcaccgg ggcgcgggga gggggaggcg gcagacaggg cagaggcagg cgaggaggcg 8041 gaggagctgc ccggtgccgg cagggtggag cccacagggg tgaggggggc ggcaggcgcg 8101 gtggcgggca aagtctgtag attgggcagc ggaggattgt ctgtggtggt ggcggataca 8161 ggcgagggtg ggcggtgggg tgaggccggg ctgtgggtgt cagtggcagt ggagccgttg 8221 gcctgcaggg cggcgctctc tttggtcggg atggtgctgt gcggcgcacc tgaggtagct 8281 gtgtgcggga gggcgcaggg ggaacacctg cggggcgggg gagacccact gctgcccgcc 8341 gcatcacccg cagacgctga atctacaacc tgattatgag gcccgccatc agcagaaccg 8401 ctggaagagt cagaccggat gccattagga cctgcccaat gagaacccgg acctttctga 8461 agcccctaaa cacagaagag atgcacaaaa catgaatgaa cgcaatgatg aagaactgaa 8521 cagacacaac acttcaccac aggaacctca actgagagaa agttgaaatg ctctgattgt 8581 gtaataacgg aacttgacca aagaccacaa cactgaggtg tagacaggtg tatcgctctg 8641 catttacagt agtgtctcaa tatctgcagc acacctgagc gggggggagc tgcgggctcc 8701 tgcggccggc tcctgggctt gtgcagttgt gaggtagtgt gttggggtgc aggtaaggca 8761 cgtctccgtt cgctctgctc tccgtgtgat tattgcggac tgcaggggtc tgagggccag 8821 ggcggggccc ggggccattg tggagcgtct gtagcgcagg accgcgggag gccggcagtg 8881 agggcccatt ggagagcgag ggccgaatct ggccagagga gttctgcctc atctgaacac 8941 aaacatcaca acaggcgatt attataaaga gagcagaaaa acatgtcaaa taatgatgac 9001 gtgacaccac aacaacagag cggttctgga gggtcaaact cagctctgca gtttagattt 9061 aactggaatt aaactgatct aactaacaga gtctcacagc agcaggtaaa ggatggtgta 9121 ctggtgcagt ggtgtggagc tgatggtgca gtggtgtgga gctgatggtg cagtggtgtg 9181 gagctgatgg tgcagtggtg tggagctgac ggtacagtgg tgtggagctg acggtgcagt 9241 ggtgtggagt tgacggtgca gtggtgtaga gctgacggta cagtggtgtg gagctgatgg 9301 tgca //