LOCUS       CR760201                1871 bp    mRNA    linear   VRT 04-OCT-2006
DEFINITION  Xenopus tropicalis finished cDNA, clone TNeu059p06.
ACCESSION   CR760201
VERSION     CR760201.2
KEYWORDS    .
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1871)
  AUTHORS   Amaya E., Ashurst J.L., Bonfield J.K., Croning M.D.R., Chen C-K.,
            Davies R.M., Francis M.D., Garrett N., Gilchrist M.J.,
            Grafham D.V., McLaren S.R., Papalopulu N., Rogers J., Smith J.C.,
            Taylor R.G., Voigt J., Zorn A.M.
  JOURNAL   Submitted (04-OCT-2006) to the INSDC. Sanger Institute, Hinxton,
            Cambridgeshire, CB10 1SA, UK. E-mail enquiries: trop@sanger.ac.uk
COMMENT     Sanger Xenopus tropicalis EST/cDNA project.
            
            This sequence is from a Xenopus Gene Collection (XGC) library, from
            a
            library constructed by Aaron M. Zorn. cDNA was prepared from RNA
            extracted
            from neurula embryos. EcoRI-NotI cut cDNA was then ligated into
            pCS107 with
            EcoRI at the 5' end and NotI at the 3' end.
            Vector: pCS107; Site_1: EcoRI; Site_2: NotI
            Host: Escherichia coli DH10B
FEATURES             Location/Qualifiers
     source          1..1871
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /dev_stage="neurula"
                     /clone_lib="XGC-neurula"
                     /clone="TNeu059p06"
                     /db_xref="taxon:8364"
     mRNA            1..1853
                     /gene="pafah1b1"
                     /locus_tag="TNeu059p06.1-001"
                     /product="platelet-activating factor acetylhydrolase,
                     isoform Ib, alpha subunit"
     CDS             468..1700
                     /gene="pafah1b1"
                     /locus_tag="TNeu059p06.1-001"
                     /standard_name="OTTXETP00000010509"
                     /product="platelet-activating factor acetylhydrolase,
                     isoform Ib, alpha subunit"
                     /note="match: proteins: P63004 P63005 Q7T394"
                     /db_xref="GOA:Q6NZH4"
                     /db_xref="InterPro:IPR001680"
                     /db_xref="InterPro:IPR006594"
                     /db_xref="InterPro:IPR015943"
                     /db_xref="InterPro:IPR017252"
                     /db_xref="InterPro:IPR017986"
                     /db_xref="InterPro:IPR019775"
                     /db_xref="InterPro:IPR020472"
                     /db_xref="InterPro:IPR036322"
                     /db_xref="InterPro:IPR037190"
                     /db_xref="UniProtKB/Swiss-Prot:Q6NZH4"
                     /protein_id="CAJ83045.1"
                     /translation="MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELD
                     KKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEFTSGGPIGQKRDPKEWIPRPPEKY
                     ALSGHRSPVTRVIFHPVFSVMVTASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH
                     SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKM
                     WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHE
                     HVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTL
                     VGHDNWVRGVQFHPGGKFILSCADDKTIRIWDYKNKRCMKTLNAHEHFVTSLDFHKTA
                     PYVVTGSVDQTVKVWECR"
     regulatory      1833..1838
                     /regulatory_class="polyA_signal_sequence"
     polyA_site      1853
BASE COUNT          555 a          386 c          434 g          496 t
ORIGIN      
        1 cggaaaccac ggagaagaaa gggaggcacg gacccttaga aaggaatagc tgcagagaag
       61 acggattcag tgcaatttga caggaaacaa cgtacataca agcgagcccc gccgacctcc
      121 acacccaagc tctttatttt tatttatttg atttcttgtc acctcgtcag gctctaactg
      181 ggagcctcat cccccgccct tccagagacc ttgcccaggg gagctgcccg gcggccatga
      241 gaagaaatcc ttctcccgct gtgtgcttgg gataaccctg cacggtggaa tgaaccgtcc
      301 ttgttgaatg actccacatt tttcatgaaa cttcatctgg aggagaatta ttcttacttc
      361 tgaagccact cggtggcaca ctttcctaca aacccagttt tcataagttg ctgaagaact
      421 cctgaaggtg tccctttttg ttttgtataa gtgggacatt gttcatcatg gtgctgtcac
      481 agaggcaaag agatgaacta aatcgagcga tagcagatta cctgcgttcc aatgggtatg
      541 aagaggccta ttctgttttt aagaaggagg cagaacttga tatgaatgaa gagttagaca
      601 agaagtatgc tggactcttg gagaagaagt ggacatctgt catcagatta cagaaaaagg
      661 ttatggaact agaatccaaa ttaaatgaag caaaagaaga gtttacatct ggaggaccaa
      721 taggccaaaa gcgagacccc aaagaatgga tacctcgccc acctgaaaaa tatgcactca
      781 gtggtcatcg gagtcccgtc actcgtgtca tttttcatcc agtgtttagt gttatggtca
      841 cagcatcaga agatgcaaca attaaggtgt gggactatga gactggagat tttgaacgca
      901 cactcaaggg gcacacagac tctgtgcagg atatatcttt tgaccattct ggaaagctac
      961 tggcctcttg ttctgcagat atgactatta agctatggga tttccaaggt tttgagtgta
     1021 tcaggaccat gcatggtcat gatcataatg tttcctcagt agccattatg cccaatggag
     1081 atcatatagt gtctgcctca agggataaaa ccattaagat gtgggaggtt cagactgggt
     1141 attgtgtaaa gactttcaca ggacacagag agtgggttcg catggtgagg ccaaaccagg
     1201 atggcacact aattgccagc tgttctaatg accaaactgt tcgtgtttgg gttgtagcta
     1261 caaaggaatg caaagcagaa cttagagagc atgaacatgt ggtagaatgc atttcttggg
     1321 caccagaaag ctcatattct accatatcag atgccacagg atctgagact aaaaaaagtg
     1381 gtaaacccgg cccatttctc ctgtctggtt ccagagataa aactataaag atgtgggaca
     1441 ttagcattgg catgtgccta atgacacttg ttggccatga caattgggtg cgtggagttc
     1501 aattccatcc aggaggaaag tttattctta gttgtgctga tgataaaact atacgcattt
     1561 gggactacaa gaacaaacgc tgcatgaaaa cccttaatgc gcatgaacat tttgttacct
     1621 ctttggattt ccacaagact gcgccgtatg tggtcactgg aagcgtagat caaacagtaa
     1681 aagtgtggga gtgccgttga tttgaattca ccttggaacc tgtcgccttt cccctttcct
     1741 ctggatgcac tcagatacca tggttaccca ttgagctctg ttaaatacct attgtccttt
     1801 catgtaaatt attctggatg tagattgagc ttattaaatg ttacacaaaa agtaaaaaaa
     1861 aaaaaaaaaa a
//