LOCUS       CM012439            40760599 bp    DNA     linear   CON 16-APR-2026
DEFINITION  Oryzias javanicus isolate RS831 chromosome 3, whole genome shotgun
            sequence.
ACCESSION   CM012439 RWID01000000
VERSION     CM012439.1
DBLINK      BioProject: PRJNA505405
            BioSample: SAMN10417210
KEYWORDS    WGS.
SOURCE      Oryzias javanicus (javanese ricefish)
  ORGANISM  Oryzias javanicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes;
            Adrianichthyidae; Oryziinae; Oryzias.
REFERENCE   1  (bases 1 to 40760599)
  AUTHORS   Herpin,A., Takehana,Y., Naruse,K., Ansai,S. and Kawaguchi,M.
  TITLE     A chromosome length genome reference of the Java medaka (oryzias
            javanicus)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 40760599)
  AUTHORS   Lopez-Roques,C., Donnadieu,C., Bouchez,O., Klopp,C., Cabau,C. and
            Zahm,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2018) PHASE, INRA, Bat 16A Campus de Beaulieu,
            Rennes, 35 35042, France
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: SmartDeNovo v. MAY-2017; ARCS v. 1.0.1;
                                      Canu v. 1.5
            Assembly Name          :: OJAV_1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 76.5x
            Sequencing Technology  :: PacBio RSII; Illumina HiSeq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..40760599
                     /organism="Oryzias javanicus"
                     /mol_type="genomic DNA"
                     /isolate="RS831"
                     /db_xref="taxon:123683"
                     /chromosome="3"
                     /sex="female"
                     /tissue_type="whole body"
                     /dev_stage="adult"
                     /geo_loc_name="Malaysia: Penang"
                     /collection_date="14-Oct-2015"
                     /collected_by="Yusuke Takehana, NIBB, Japan"
                     /note="genotype: ZW"
CONTIG      join(complement(RWID01000105.1:1..2167129),gap(unk100),
            RWID01000298.1:1..242064,gap(unk100),
            complement(RWID01000062.1:1..2524090),gap(unk100),
            complement(RWID01000199.1:1..606908),gap(unk100),
            complement(RWID01000112.1:1..2187509),gap(unk100),
            complement(RWID01000066.1:1..4115483),gap(unk100),
            RWID01000005.1:1..12409798,gap(unk100),
            complement(RWID01000193.1:1..853396),gap(unk100),
            complement(RWID01000006.1:1..15046819),gap(unk100),
            RWID01000317.1:1..280525,gap(unk100),RWID01000274.1:1..325878)
//