LOCUS CM001888 25448839 bp DNA linear CON 26-JUL-2016 DEFINITION Theobroma cacao cultivar Matina 1-6 chromosome 10, whole genome shotgun sequence. ACCESSION CM001888 ALXC01000000 VERSION CM001888.1 DBLINK BioProject: PRJNA51633 BioSample: SAMN02981445 KEYWORDS WGS. SOURCE Theobroma cacao (cacao) ORGANISM Theobroma cacao Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma. REFERENCE 1 (bases 1 to 25448839) AUTHORS Motamayor,J.C., Mockaitis,K., Schmutz,J., Haiminen,N., Iii,D.L., Cornejo,O., Findley,S.D., Zheng,P., Utro,F., Royaert,S., Saski,C., Jenkins,J., Podicheti,R., Zhao,M., Scheffler,B.E., Stack,J.C., Feltus,F.A., Mustiga,G.M., Amores,F., Phillips,W., Marelli,J.P., May,G.D., Shapiro,H., Ma,J., Bustamante,C.D., Schnell,R.J., Main,D., Gilbert,D., Parida,L. and Kuhn,D.N. TITLE The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color JOURNAL Genome Biol. 14 (6), R53 (2013) PUBMED 23731509 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 25448839) AUTHORS Mockaitis,K., Gilbert,D.G., Schmutz,J.J., Kuhn,D., Saski,C., Scheffler,B., Livingstone,D., Jenkins,J., Main,D., Feltus,A., Podicheti,R., Zheng,P., Ficklin,S., Haiminen,N., Royaert,S., May,G.D., Bretting,P., Shapiro,H., Schnell,R., Parida,L. and Motamayor,J.C. TITLE Direct Submission JOURNAL Submitted (31-AUG-2012) Biology Department, Indiana University, 1000 E. 3rd St., Bloomington, IN 47405, USA COMMENT Submission authors: Mockaitis,K., Gilbert,D.G., Podicheti,R., Indiana University, Biology Department, Bloomington, Indiana, USA Schmutz,J.J., Jenkins,J., HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA Saski,C., Feltus,A., Clemson University, CUGI, Clemson, SC, USA May,G.D., NCGR, Santa Fe, New Mexico, USA Kuhn,D., Livingstone,D., Royaert,S., Schnell,R., USDA-ARS, Miami, FL, USA Scheffler,B., USDA-ARS, Stoneville, Mississippi, USA Bretting,P., USDA-ARS, Beltsville, MD, USA Main,D., Zheng,P., Ficklin,S., Washington State University, Pullman, Washington, USA Haiminen,N., Parida,L. IBM, New York, NY, USA Shapiro,H., Motamayor,J.C., Mars, Incorporated, McLean, VA, USA Genome assembly produced by Jeremy Schmutz (Hudson Alpha) This assembly is primarily composed of Roche 454 Titanium STD reads (USDA-ARS, Stoneville), augmented by 6 recombination paired Titanium libraries (CGB, Indiana U), 3 fosmid packaged Sanger sequenced libraries (USDA-ARS, Miami and CUGI, Clemson), and 3 Sanger sequenced BAC Ends libraries (CUGI, Clemson). Included were an additional 2 paired libraries and linear data from a pre-release version of the Roche 1k system (Roche). We also made extensive use of 100x of 90 bp Illumina based paired sequence (NCGR) and 36x paired 101bp sequence (CGB, Indiana U). The assembly process was as follows: ------------------------------------ 1. Cleaned 454 recombination pairs of duplicate pairs and unpaired read data. 2. Discarded STD Titanium reads < 100 bp. 3. Corrected indel errors in the 454 data by aligning all Illumina reads from a 99x set of V2 illumina data. 4. Assembled the 454 data, FES and BES using our in-house version of the Arachne2 assembler, including a step to remove unanchored repetitive sequence. 5. Applied subsequent filtering steps to remove short (< 150bp) and 454 pair only contigs to minimize chimeric projections. 6. Combined the subsequent assembly with the Cacao physical map (CUGI, Clemson) and the existing Cacao genetic marker maps (CATIE, MCCS, and PNG) (USDA-ARS, Miami) to identify potential misassembled scaffolds. Applied 47 scaffold breaks. 7. Rearranged scaffolds based on the genetic map, additional FES data, and the physical map to build chromosome-scale pseudomolecules with 103 joins (represented by 10k N's in the final scaffolds). 8. Screened the resulting scaffolds for mitochondria, chloroplast, unanchored rDNA, and potential prokaryotic contaminants and removed these scaffolds. 9. Sequestered, small, highly repetitive scaffolds (>=95% composed of 24mers occurring at least 4 times in the larger scaffolds) and small scaffolds, less than 1kb of sequence content. 10. Post-processed the final scaffolds to correct 454 insertion/deletion errors using 36x TrueSeq Illumina data . 11. Validated the resulting pseudomolecules against EST data sets collected as part of this project (CGB, Indiana U) and against an 995 kb Sanger based contig (CUGI, Clemson). 12. Inserted the reference sequence into chromosome 5, replacing the WGS sequence in that region. The resulting pseudomolecules (numbered 1-10) capture 94.6% of the assembled sequence and 98.2% of the sample EST set. Assembled Sequence Coverage per Library: ---------------------------------------- LIB COV. INSERT STDDEV ----- ------ --------------- LINE 15.58x N/A TC3A 0.56x 2368 +/- 707 TC3F 0.51x 2545 +/- 801 TC3D 0.56x 3948 +/- 455 TC3B 0.92x 3949 +/- 452 TC5C 0.92x 6278 +/- 662 TC8E 1.04x 7071 +/- 988 TC8F 0.30x 7176 +/- 1258 TC8A 0.97x 8128 +/- 1005 TCFB 0.01x 35552 +/- 4362 TCFA 0.01x 35706 +/- 4341 TCFC 0.26x 36122 +/- 4467 TCCB 0.03x 93963 +/- 14897 TCCC 0.03x 114008 +/- 24776 TCCA 0.04x 127062 +/- 22613 Total 21.74x Final Assembly Statistics: -------------------------- Main genome scaffold total: 711 Main genome contig total: 20103 Main genome scaffold sequence total: 346.0 MB Main genome contig sequence total: 330.8 MB (-> 4.4% gap) Main genome scaffold N/L50: 5/34.4 MB Main genome contig N/L50: 1080/84.4 KB Number of scaffolds > 50 KB: 74% main genome in scaffolds > 50 KB: 98.4% Minimum Number Number Total Total Scaffold Scaffold of of Scaffold Contig Contig Length Scaffolds Contigs Length Length Coverage -------- --------- ------- ----------- ----------- -------- All 711 20,103 345,993,675 330,821,837 95.61% 1 kb 711 20,103 345,993,675 330,821,837 95.61% 2.5 kb 570 19,917 345,771,487 330,635,450 95.62% 5 kb 438 19,654 345,274,253 330,363,628 95.68% 10 kb 260 19,111 343,977,657 329,666,795 95.84% 25 kb 113 17,955 341,704,814 328,516,629 96.14% 50 kb 74 17,270 340,358,744 327,606,137 96.25% 100 kb 36 15,857 337,733,377 325,806,488 96.47% 250 kb 14 13,751 334,312,246 323,434,351 96.75% 500 kb 13 13,655 333,885,350 323,071,182 96.76% 1 mb 11 13,560 332,179,961 321,406,397 96.76% 2.5 mb 10 13,460 330,456,197 319,759,406 96.76% 5 mb 10 13,460 330,456,197 319,759,406 96.76% EST validation: --------------- We used several 454 EST runs to validate expected coding sequence space. We first removed reads < 300bps and removed all duplicate reads (to avoid over counting 454 duplicates). We then placed these at 90% ID and 85% coverage against the assembly. This is a completeness measure, rather than a comprehensive examination of gene space. Organelle sequence excluded: 1015064 total sequences. 992071 sequences (98.15%) place at >90% identity and >85% coverage 4288 library artifacts (0.42%) 9763 sequences have >=50 percent coverage (0.97%) 8942 sequences are not found (0.88%) Organelle sequence included: 1015064 total sequences. 1000012 sequences (98.90%) place at >90% identity and >85% coverage 3883 library artifacts (0.38%) 8485 sequences have >=50 percent coverage (0.84%) 2684 sequences are not found (0.27%) The ESTs that do not place are primarily composed of rDNA and prokaryotic contamination. ##Genome-Assembly-Data-START## Assembly Method :: Jeremy Schmutz v. 2011-08-01 Assembly Name :: Theobroma_cacao_20110822 Genome Coverage :: 15.58x Sequencing Technology :: 454; Illumina; Sanger ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..25448839 /organism="Theobroma cacao" /mol_type="genomic DNA" /cultivar="Matina 1-6" /db_xref="taxon:3641" /chromosome="10" gene 495..7797 /locus_tag="TCM_042330" /note="dbxref CacaoGD:Thecc1EG042330" mRNA join(495..971,1029..1865,1958..3566,3797..7797) /locus_tag="TCM_042330" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040846.9" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026877t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040846" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete; weak similarity to DNAse I-like superfamily protein" CDS join(543..971,1029..1865,1958..3566,3797..7671) /locus_tag="TCM_042330" /note="paralog of Thecc1EG026877t1; weak similarity to DNAse I-like superfamily protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17514.1" /db_xref="Phytozome:PGSC0003DMP400040846" /db_xref="TAIR:AT1G43760.1" /translation="MSLVGKFSRMPKLQDIRSAFKGIGLAGAYEVRWLDYKHILIHLT NEHDCNRVWTKQVWFIANQKMRVFKWTPDFEPEKESAVVPVWIAFPNLKAHLFEKSAL LLIAKTVGKPLFVDEATANGSRPSVARVCIEYDCRRPPIDQRVEFSQMPAYCDHCCHV GHKEIDCIVLGNKDKPLGSSKSQYLRVLEAEKKKGYGGGSEKNLEKSKNPEKEKIVRP EEPLTQRWQPVSKAGTSGTKDQQGKEIVQVLNRFQAISEDRDESQNRDVTQSDETIGG VEALPEGRVHAGKQHVDKRKAHGLMEKGTRTGSDILKVRDEQLNGTTDFSTAKPSSSN GSKVTDRSEDGEVIFWDRTEEQRADVEDRHGSSKQSGTKNEEAISVNLQTLEEDTQAT VHEKRKQKHGKIEGDGEKEKSSAADTQDCAAKDKYFLNKALEQEQLASAPTAAGHDFS EVPTAAQQKPRPPSTLHGQQVQTSQVSREVQTVFHEKEIHGQPSNTADVERISTELKE GNEQEPFDVHEMHGQKGGHINETTLTEPPRDETIVKATVGRTAAGPLPSVNKQRDPPN SESSKRDREQTAIDGNEKTFGQQEMQEVAGGNSNKYFFNSLLHGSVRTSEDQPVKNFI QLPKPSEAPRKISLKQHSSKKNVTNMNGEGNRAAQQEPTNLDAATPRVWKGERPADSH GDANPRDQTADNVIKIVNQKREQVGRQIKGIVETTLHGNVLLPIVKPTNTRAVRTTTS IEGAGTTADGPTPSPPSPELSDSTLGRKAQESILPIEQVGTQLQKTGDAGTSQNLKTD KFELSTKTTAWRQEKEQRIAQSGSGLQNLLPDTLEGSGEHVPIEEEGTSQTQRQTEQT QATINYVISSERTENKEDSHPNLESALSKCMLNKELSDIPSISCNSHTELKVHPRVRY RRHSDSAIPFENTLSSATEDATISGGKEEESDEDSTPRSPTAKNYVIFDHPQCLHVRL TSPWLETPFFVTIVYAKCTRSERTLLWDCLRRLADDIEVPWLVGGDFNVILKREERLY GSAPHEGAMEDFASTLLDCGLLDGGFEGNSFTWTNNRMFQRLDRIVYNHHWINKFPVT RIQHLNRDGSDHCPLLISCFNSSEKAPSSFRFQHAWVLHHDFKTSVESNWNLPINGSG LQAFWSKQHRLKQHLKWWNKAVFGDIFSKLKEAEKRVEECEILHQQEQTFESRIKLNK SYAQLNKQLNIEELFWKQKSGVKWVVEGERNTKFFHMRMQKKRIRSHIFKVQDPEGRW IEDQEQLKHSAIEYFSSLLKVEPCYDSRFQSSLIPSIISNSENELLCAEPSLQEVKDA VFGINSESAAGPDGFSSYFYQQCWNIIAQDLLDAVRDFFHGANIPRGVTSTTLILLPK KSSASKWSDFRPISLCTVMNKIITKLLSNRLAKVLPSIITENQSGFVGGRLISDNILL AQELIGKLNTKSRGGNLALKLDMMKAYDKLDWSFLFKVLQHFGFNGQWIKMIQKCISN CWFSLLLNGRTEGYFKSERGLRQGDSISPQLFIIAAEYLSRGLNALYDQYPSLHYSSG VSISVSHLAFADDVLIFTNGSKSALQRILAFLQEYQEISGQRINVQKSCFVTHTNVSS SRRQIIAQTTGFSHQLLLITYLGAPLYKGHKKVILFNDLVAKIEERITGWENKILSPG GRITLLRSVLASLPIYLLQVLKPPICVLERVNRIFNSFLWGGSAASKKIHWASWAKIS LPIKEGGLDIRNLAEVFEAFSMKLWWRFRTIDSLWTRFMRMKYCRGQLPMHTQPKLHD SQTWKRMVANSAITEQNMRWRVGQGKLFFWHDCWMGETPLTSSNQELSLSMVQVCDFF MNNSWDIEKLKTVLQQEVVDEIAKIPIDAMSKDEAYWAPTPNGEFSTKSAWQLIRKRE VVNPVFNFIWHKTVPLTISFFLWRLLHDWIPVELKMKSKGFQLASRCRCCKSEESIMH VMWDNPVATQVWNYFSKFFQILVINPCTINQILGAWFYSGDYCKPGHIRTLVPIFTLW FLWVERNDAKHRNLGMYPNRIVWRILKLIQQLSLGQQLLKWQWKGDKQIAQEWGITFQ AESLPPPKVFPWHKPSIGEFKLNVDGSAKLSQNAAGGGVLRDHAGVMVFGFSENLGIQ NSLQAELLALYRGLILCRDYNIRRLWIEMDAASVIRLLQGNQRGPHAIRYLLVSIRQL LSHFSFRLSHIFREGNQAADFLANRGHEHQSLQVVTVAQGKLRGMLRLDQTSLPYVRF K" gene 8359..15303 /locus_tag="TCM_042331" /note="dbxref CacaoGD:Thecc1EG042331" mRNA join(8359..9354,10146..10231,10405..10742,11366..11498, 12153..12283,12368..12770,13062..13196,13311..14072, 14517..15303) /locus_tag="TCM_042331" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016766t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400054729" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete; weak similarity to Retrotransposon protein, unclassified" CDS join(8378..9354,10146..10231,10405..10742,11366..11498, 12153..12283,12368..12770,13062..13196,13311..14072, 14517..15082) /locus_tag="TCM_042331" /note="paralog of Thecc1EG016766t1; weak similarity to Retrotransposon protein, unclassified" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17515.1" /db_xref="Phytozome:PGSC0003DMP400054729" /translation="MMSTPSTSLLANENGGLQAFDSHTQPPTSPRFQTKSFLSIAAGG KPLVIPLNRDPVVYKDRPAAIFYEDKICTLAKPFSLYLVGKFTRMPKLQEVKFAFKGI DLLGAYEIKWLDYKHVIIHLSNDQDFNRIWTRQQWFIAGQKMRIFKWPLEFEAKTESP IVPVWISFPNLKAHLYEKFALLLIVKTIGKPLFVDEATTKGSRPTMARVCVKYDCRKL PIDQVWIVTQKRNTGIVTNGYAQKVEFSHMPNYWDHCCHVGHNETNCLVLGNNSKSLG SMKPQLKGQPKPILNVSKTQTREKIDEEREDKAKGIMVEDIQPATKQTDIYEKERHYS FVLSTEPASLRKHNRGGKGKGVQLSSQLRLIALGFDNDQNNAGNDQLITVRKPILRKK AKPALVNLVSVMNVEDAEVLLEQADPTTSCKRAERERYQLLNKQTMEVEGSRDDFSCS EPSTYMLNMETDSVPSNAPWLVGGDFNSIVSCDERLNGAIPHDGSVEDLSSTLLDCGL LDTGVDFFQNLLKAEQCDISRFDPSITTRIIFATDNEFFCATPSLQEDIIKRDLLEAV LDFFKGTPLPRGITFTTLVLLPKKQNASQWSEFHPISLCTVLNKIVTKLLANRLSKIL SSIISENQSGFVNGRLISDNILLAQELIGKINARSRGGNVVLKLDMAKAYDRLNWDFL YLMMEHFALQKILAFLQEYEQVSGQQVNHQKSCFITANGCPLSRRQIKAHATGWENKV LSLGGRITLLRSVLSSLPMYLLQVLKPPAIVIEKIERLFNSFLWGDSNEGKMMHWAAW NKITFPSSEGGLDIRNLKNVFDAFTLKLWWRFYTCDSLWTHFLKTKYCLGQIPQYVQP KLHDSSIWKRMIGGRDVAIQNIRWKIGKGELFFWHDCWMGDQPLVISFPSFRNDMSSV HKFYKGDSWDVDKLRLFLPVNLIDEILLIPFDRTQQDVAYWTLTPNGEFSTWSAWETI RQRQSHNTLGSLIWHRSDTDIAAMWRYNFQLKQRAPPQIVYWRKPFTGEYKLNVGGSS RNGQHAASGGVLRDHTGKLIFGFSENIGTYNSLQGELRALHRGLLLCKDCHIEKLWIE MDALAVIQLIPHSQKGSHDIRYLLESIRKCLNNISYRILHIFREGNQTVDFLSNRGHN HQNLRVFTEAQGKLHGMLKLDRLNLPYVRF" mobile_element complement(26529..26602) /note="source:CACAO_M_E43672_F60_scaffold_5 5137 5425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26570..26602 /note="source:CACAO_M_S_E32183_F51_scaffold_3 3 248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26603..26815 /note="source:CACAO_M_E14113_F106_scaffold_3 7637 7849" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26826..28286) /note="source:CACAO_M_E57385_F197_scaffold_9 1803 3262" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(32576..33558) /note="source:CACAO_M_E35704_F13_scaffold_5 9165 10170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33561..34407 /note="source:CACAO_M_E57385_F197_scaffold_9 1805 2650" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(33922..79003) /locus_tag="TCM_042332" /note="dbxref CacaoGD:Thecc1EG042332" mRNA complement(join(33922..34174,71974..72104,72362..72483, 72603..72709,72816..72894,73004..73093,73195..73458, 73544..74021,75316..75901)) /locus_tag="TCM_042332" /product="Cytochrome P450, family 88, subfamily A, polypeptide 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29709.m001228.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016045t1" /inference="similar to AA sequence:ricco:29709.m001228" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg227t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg227t1" mobile_element 34408..35333 /note="source:CACAO_M_E23001_F244_scaffold_4 1 925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35434..36195) /note="source:scaffold_4_CACTA_0503 4506 5267" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(36553..37238) /note="source:scaffold_4_CACTA_0503 3237 3918" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37236..39338 /note="source:CACAO_M_E57385_F197_scaffold_9 2643 4720" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(39332..39484) /note="source:CACAO_M_E35704_F13_scaffold_5 1 130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 44055..44705 /note="source:CACAO_M_E49593_F244_scaffold_7 1 632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(54462..54919) /note="source:CACAO_M_E11669_F244_scaffold_2 827 1284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 55305..55745 /note="source:CACAO_M_E23001_F244_scaffold_4 1805 2245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(58510..59424) /note="source:CACAO_Mutator_E1149_scaffold_5 6053 6939" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(58522..59716) /note="source:INTACT473_F7_scaffold_3-int 7655 8804" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 60201..71791 /locus_tag="TCM_042335" /note="dbxref CacaoGD:Thecc1EG042335" mRNA join(60201..60783,71072..71791) /locus_tag="TCM_042335" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc20779t1" CDS join(60463..60783,71072..71212) /locus_tag="TCM_042335" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17518.1" /translation="MSSFSIPIFSIYRWTLSSLFKNLTFLSHATRWQLEEFLFLSAVI GYETQSFPFAEPLSLPLNRLVPSLYIPLLPFAGRRLSLFIPMPAVRISLLYLFLSSTA SPKLHISLPKTDDSKAQILIPLNRQHFPKAFTQPAALPKPKNPSPKIKIHP" mobile_element 60783..61651 /note="source:CACAO_M_S_E878_F42_scaffold_1 1 869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(62200..62967) /note="source:CACAO_M_E1671_F42_scaffold_1 802 1569" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 63958..66562 /note="source:INTACT439_F42_scaffold_7-int 3155 5756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(66796..67552) /note="source:CACAO_M_S_E6027_F12_scaffold_2 4935 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(67653..68661) /note="source:CACAO_M_E56778_F42_scaffold_8 2331 3338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 70681..71065 /note="source:CACAO_M_E71702_F42_scaffold_10 1674 2058" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(71801..72104,72362..72483,72603..72709, 72816..72894,73004..73093,73195..73458,73544..74021, 75316..75646,77527..78158,78864..79003)) /locus_tag="TCM_042332" /product="Ent-kaurenoic acid oxidase 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29709.m001228.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016045t1" /inference="similar to AA sequence:ricco:29709.m001228" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b040846t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg227t1" CDS complement(join(71987..72104,72362..72483,72603..72709, 72816..72894,73004..73093,73195..73458,73544..74021, 75316..75646,77527..77557)) /locus_tag="TCM_042332" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29709.m001228; paralog of Thecc1EG016045t1" /codon_start=1 /product="Ent-kaurenoic acid oxidase 1 isoform 2" /protein_id="EOY17517.1" /db_xref="TAIR:AT1G05160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23051" /translation="MCYLMRYNQGAIENARYRTTHILERSLKFDIQILGVKAVQHPAM EMGSMWMVLLAILAGLASVKWVLERVNWWLYESQLGDMQYSLPPGDLGWPFVGDMWSF LRAFKSDDRDSFIRSFVSRFGHIGIYKAFMFGSPSVIVTTPETCKRVLNDDDAFKPGW PTATVELIGKKSFIGISYEQHKRLRRLTAASVNGHEALSMYIQYIEENVISALDKWSK MGDIVFLSELRKLTFRIIMYIFLSSESEEEMEALEREYTTLNYGVRAMAINVPGFSYH KALKARKNLVAVFQSMVNKRRKQKKMNNSTNKKDMLDALMDVKDEKGETLDDEEIIDI MLMYLNAGHESSGHTTMWATIFLQQYSEFLEKAKAEQERIIKKRPSTQKGLTLKEIRE MDYLSKVIDETLRLITFSLTVFREAKTDVHISGYTIPKGWKVLVWFRSIHLDPEIYTN PKEFNPSRWDYHAARAGTFLPFGAGSRLCPGNDLAKLEIAIFLHHFLLNYQLERLNPE SKIRYLPHSRPADNCLARIKKHPPRLPKEEK" CDS complement(join(71987..72104,72362..72483,72603..72709, 72816..72894,73004..73093,73195..73458,73544..74021, 75316..75548)) /locus_tag="TCM_042332" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29709.m001228; paralog of Thecc1EG016045t1" /codon_start=1 /product="Cytochrome P450, family 88, subfamily A, polypeptide 3 isoform 1" /protein_id="EOY17516.1" /db_xref="TAIR:AT1G05160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23051" /translation="MEMGSMWMVLLAILAGLASVKWVLERVNWWLYESQLGDMQYSLP PGDLGWPFVGDMWSFLRAFKSDDRDSFIRSFVSRFGHIGIYKAFMFGSPSVIVTTPET CKRVLNDDDAFKPGWPTATVELIGKKSFIGISYEQHKRLRRLTAASVNGHEALSMYIQ YIEENVISALDKWSKMGDIVFLSELRKLTFRIIMYIFLSSESEEEMEALEREYTTLNY GVRAMAINVPGFSYHKALKARKNLVAVFQSMVNKRRKQKKMNNSTNKKDMLDALMDVK DEKGETLDDEEIIDIMLMYLNAGHESSGHTTMWATIFLQQYSEFLEKAKAEQERIIKK RPSTQKGLTLKEIREMDYLSKVIDETLRLITFSLTVFREAKTDVHISGYTIPKGWKVL VWFRSIHLDPEIYTNPKEFNPSRWDYHAARAGTFLPFGAGSRLCPGNDLAKLEIAIFL HHFLLNYQLERLNPESKIRYLPHSRPADNCLARIKKHPPRLPKEEK" mobile_element 72981..74872 /note="source:scaffold_3_CACTA_0398 1 1839" /mobile_element_type="transposon:TIR/CACTA" mobile_element 75035..75908 /note="source:scaffold_3_CACTA_0398 2016 2907" /mobile_element_type="transposon:TIR/CACTA" mobile_element 75939..76009 /note="source:scaffold_3_CACTA_0398 2993 3065" /mobile_element_type="transposon:TIR/CACTA" mobile_element 75993..76100 /note="source:CACAO_M_E49559_F88_scaffold_7 7622 7726" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(76019..76150) /note="source:CACAO_M_E49559_F88_scaffold_7 7628 7727" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 76143..76335 /note="source:scaffold_3_CACTA_0398 3061 3260" /mobile_element_type="transposon:TIR/CACTA" gene complement(77119..78924) /locus_tag="TCM_042336" /note="dbxref CacaoGD:Thecc1EG042336" mRNA complement(join(77119..78158,78864..78924)) /locus_tag="TCM_042336" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc725t1" CDS complement(77570..77782) /locus_tag="TCM_042336" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17519.1" /translation="MYRSIIVCYDLELLSFCVCGLVNNIGETADVSVELNCLPYEPHR LCSQSMLSSCVFFISSTHALQILLLF" gene complement(<78128..79583) /locus_tag="TCM_042337" /note="dbxref CacaoGD:Thecc1EG042337" mRNA complement(join(<78128..78158,78864..78934,79558..>79579)) /locus_tag="TCM_042337" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc20460t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc20460t2; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8454t5_C1" CDS complement(join(<78130..78158,78864..78934,79558..>79577)) /locus_tag="TCM_042337" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY17520.1" /translation="ADKEENRFICRIVFPTTFSDETSTNSQSNIDFHFMDNKTP" gene complement(79807..85661) /locus_tag="TCM_042338" /note="dbxref CacaoGD:Thecc1EG042338" mRNA complement(join(79807..80722,81034..81147,81455..81613, 81724..81912,82748..82833,83025..83130,83694..83827, 83960..84310,84406..84905,85575..85661)) /locus_tag="TCM_042338" /product="BR-signaling kinase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s17740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034358t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400002993" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg45t3" mRNA complement(join(79980..80722,81034..81147,81455..81613, 81724..81912,82748..82833,83025..83107,84001..84310, 84406..84956)) /locus_tag="TCM_042338" /product="BR-signaling kinase 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s17740.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08720.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc380t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg45t3" mRNA complement(join(79980..80722,81034..81147,81360..81613, 81724..81912,82748..82833,83025..83107,84001..84310, 84406..84956)) /locus_tag="TCM_042338" /product="BR-signaling kinase 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s17740.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08720.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc380t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg45t3" CDS complement(join(80471..80722,81034..81147,81455..81613, 81724..81912,82748..82833,83025..83107,84001..84310, 84406..84928)) /locus_tag="TCM_042338" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="BR-signaling kinase 2 isoform 3" /protein_id="EOY17523.1" /db_xref="Phytozome:POPTR_0003s08720.1" /db_xref="TAIR:AT5G46570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHD7" /translation="MFLFVLPSSQSVPTPSSRLFMLSTNLYFYYYYYYYVMLTKILPW SYYLYKKPYFILSHQKLTLGVSIILSIHNKQKGQKYSLGTPHSTPHFSQLSFFPLLSP ASPNSQVLFQVPTILYHTYSILYTGVLLLLLLLLILLYVNKGRPTVMGCFQSKTTHLP SPDQDPPPQTKPDLDGDGEQSSLPAFKEFGLVELRAATNGFSSELIVSESGEKAPNVV YRGKLKNNRVVAIKRFSRQSWPDPHQFVNEAAGVGKVRHKRLVNLIGCCAEGDERLLV ADFGLMKNSRDGKSYSTNLAYTPPEFLRTGRVIPESVIYSYGTVLLDLLSGKHIPPSH ALDLIRGKNLLLLMDSSLEGQYANEDASELVELASKCLQYEARDRPDIEFLLSAVVPL QKQKEVASHVLMGLSRTPSLLPTMLSALGKACARMDLTAVHDILLKTGYRDEEGAENE LSFQEWTQQVQDMLNTKKFGDIAFRDKDFKNAIDYYSKLVSMMSVPSGTVFVRRALSF LMIGQPEFALRDAMQAQVCLPEWPTAFYMQALALSKLGMETDAQDMLNDGASFEAKKQ NGWRV" CDS complement(join(80471..80722,81034..81147,81455..81613, 81724..81912,82748..82833,83025..83130,83694..83827, 83960..84310,84406..84868)) /locus_tag="TCM_042338" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034358t1" /codon_start=1 /product="BR-signaling kinase 2 isoform 1" /protein_id="EOY17521.1" /db_xref="Phytozome:PGSC0003DMP400002993" /db_xref="TAIR:AT5G46570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944A7" /translation="MLSTNLYFYYYYYYYVMLTKILPWSYYLYKKPYFILSHQKLTLG VSIILSIHNKQKGQKYSLGTPHSTPHFSQLSFFPLLSPASPNSQVLFQVPTILYHTYS ILYTGVLLLLLLLLILLYVNKGRPTVMGCFQSKTTHLPSPDQDPPPQTKPDLDGDGEQ SSLPAFKEFGLVELRAATNGFSSELIVSESGEKAPNVVYRGKLKNNRVVAIKRFSRQS WPDPHQFVNEAAGVGKVRHKRLVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHWEKQP LPWEMRLRVAYHIAQALDHCNAENRKIYHDLNAYRVLFDEDGDPRLSSFGLMKNSRDG KSYSTNLAYTPPEFLRTGRVIPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNLLL LMDSSLEGQYANEDASELVELASKCLQYEARDRPDIEFLLSAVVPLQKQKEVASHVLM GLSRTPSLLPTMLSALGKACARMDLTAVHDILLKTGYRDEEGAENELSFQEWTQQVQD MLNTKKFGDIAFRDKDFKNAIDYYSKLVSMMSVPSGTVFVRRALSFLMIGQPEFALRD AMQAQVCLPEWPTAFYMQALALSKLGMETDAQDMLNDGASFEAKKQNGWRV" CDS complement(join(81380..81613,81724..81912,82748..82833, 83025..83107,84001..84310,84406..84928)) /locus_tag="TCM_042338" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="BR-signaling kinase 2 isoform 2" /protein_id="EOY17522.1" /db_xref="Phytozome:POPTR_0003s08720.1" /db_xref="TAIR:AT5G46570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHD7" /translation="MFLFVLPSSQSVPTPSSRLFMLSTNLYFYYYYYYYVMLTKILPW SYYLYKKPYFILSHQKLTLGVSIILSIHNKQKGQKYSLGTPHSTPHFSQLSFFPLLSP ASPNSQVLFQVPTILYHTYSILYTGVLLLLLLLLILLYVNKGRPTVMGCFQSKTTHLP SPDQDPPPQTKPDLDGDGEQSSLPAFKEFGLVELRAATNGFSSELIVSESGEKAPNVV YRGKLKNNRVVAIKRFSRQSWPDPHQFVNEAAGVGKVRHKRLVNLIGCCAEGDERLLV ADFGLMKNSRDGKSYSTNLAYTPPEFLRTGRVIPESVIYSYGTVLLDLLSGKHIPPSH ALDLIRGKNLLLLMDSSLEGQYANEDASELVELASKCLQYEARDRPDIEFLLSAVVPL QKQKEVASHVLMGLSRTPSLLPTMLSALGKACARMDLTAVHDILLKTGYRDEEGAENE VGYGYLTSQWYKNVLLLSLKNRQK" gene 89486..94039 /locus_tag="TCM_042339" /note="dbxref CacaoGD:Thecc1EG042339" mRNA join(89486..90044,91281..91407,91853..92070,92201..92763, 92913..94039) /locus_tag="TCM_042339" /product="Nitrate transporter 1.5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s17750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015765t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s17750.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc459t1" CDS join(90015..90044,91281..91407,91853..92070,92201..92763, 92913..93804) /locus_tag="TCM_042339" /note="paralog of Thecc1EG015765t1" /codon_start=1 /product="Nitrate transporter 1.5" /protein_id="EOY17524.1" /db_xref="Phytozome:POPTR_0014s17750.1" /db_xref="TAIR:AT1G32450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQL2" /translation="MACLNNNCKEVSIEKKMIKEEESYTLDGAVDRHGRPAIRGRTGT WVAGILLLVNQGLATLAFFGVGVNLVLFLTRVLGQDNADAANNVSKWTGTVYIFSLLG AFLSDSYWGRYKTCAIFQAVFVVGLVLSSVSTSVFLLKPSGCGDEDTSCGSHSAFHIV FFYFAIYLVALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSN TILGYFEDQGMWVLGFWASAASAFVALVLFLIGTPRYRHFKPTGNPLSRFCQVLVAAS RKWKVQMTPGGENLFEVEKKESATNGARKILHTEGFRFLDRAAIMTPRDYADGQEKNI DGRNPWSLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTISNF HIPAASMSSFDILSVATFIFIYRRVLDPIVARIKTKPKGLTELQRMGIGLVIAILAMV SAGIVELFRLKYADKDCPSCENASSLSIFWQVPQYMLIGASEVFMYVGQLEFFNGQAP DGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRDDMPGWIPGNLNRGHLDRFYFLL AALTTADLVVYIICAKWYKYIKFEGRSGEDNSTDGQAAAELKV" gene 94346..97378 /locus_tag="TCM_042340" /note="dbxref CacaoGD:Thecc1EG042340" mRNA join(94346..94757,94897..95013,95399..95433,96102..96202, 96828..97378) /locus_tag="TCM_042340" /product="NADH dehydrogenase 1 alpha subcomplex assembly factor 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018384001" /inference="similar to AA sequence:Phytozome:GSVIVT01018384001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3723t3" mRNA join(94382..94757,94897..95013,95399..95433,96102..96202, 96756..>96825) /locus_tag="TCM_042340" /product="NADH dehydrogenase 1 alpha subcomplex assembly factor 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018384001" /inference="similar to AA sequence:Phytozome:GSVIVT01018384001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg605t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg605t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3723t3" CDS join(94582..94757,94897..95013,95399..95433,96102..96202, 96828..96914) /locus_tag="TCM_042340" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NADH dehydrogenase 1 alpha subcomplex assembly factor 3 isoform 1" /protein_id="EOY17525.1" /db_xref="Phytozome:GSVIVT01018384001" /db_xref="TAIR:AT2G44525.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RUX8" /translation="MAARGRAVETLPKLIRSLRKDSPSSTRRQPLPSLRRAFSLYDQI NLIDNVPEDQLRFQGYTDTGFTVNGVNYEGSLLCVGHLLTSWVPNKFSQITPDSLSIF QIIRPIPEILILGCGRNIEPVDPELRHFIRSTGMKLEALDSRNAASTYNILNEEGRIV AAALLPNGVSS" CDS join(94582..94757,94897..95013,95399..95433,96102..96202, 96756..>96824) /locus_tag="TCM_042340" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NADH dehydrogenase 1 alpha subcomplex assembly factor 3 isoform 2" /protein_id="EOY17526.1" /db_xref="Phytozome:GSVIVT01018384001" /db_xref="TAIR:AT2G44525.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RUX8" /translation="MAARGRAVETLPKLIRSLRKDSPSSTRRQPLPSLRRAFSLYDQI NLIDNVPEDQLRFQGYTDTGFTVNGVNYEGSLLCVGHLLTSWVPNKFSQITPDSLSIF QIIRPIPEILILGCGRNIEPVDPELRHFIRSTGMKLEALDSKHQKEPTSTTISGGSIF FLFLLL" gene 97676..102429 /locus_tag="TCM_042341" /note="dbxref CacaoGD:Thecc1EG042341" mRNA join(97676..98070,98183..98362,98493..98741,99298..99441, 99813..99980,100426..100495,100681..100762,101388..101547, 101884..102429) /locus_tag="TCM_042341" /product="Phosphoribosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018382001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015773t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018382001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02368t00001" mRNA join(97888..98070,98183..98362,98571..98741,99298..99441, 99813..99980,100426..100495,100681..100762,101388..101547, 101884..102260) /locus_tag="TCM_042341" /product="Phosphoribosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018382001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015773t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018382001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02152t00002; inference alignment:Newbler:10:TSA:cgbaP2_g02368t00001" CDS join(97978..98070,98183..98362,98493..98741,99298..99441, 99813..99980,100426..100495,100681..100762,101388..101547, 101884..101922) /locus_tag="TCM_042341" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015773t1" /codon_start=1 /product="Phosphoribosyltransferase family protein isoform 1" /protein_id="EOY17527.1" /db_xref="Phytozome:GSVIVT01018382001" /db_xref="TAIR:AT2G44530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42581" /translation="MASSLPCTPTSSLSPATLFKAHPRFPLRHRFRCNVVEPLKFDNG KPFFPFLTTDPALPTFLSSNSHLERSINKNDTRLRIFSGTANPALAQEIACYMGLELG KIKIKRFADGEIYVQLQDSVRGCDVYLVQPTCPPANENLMELLIMVDACRRASAKNIT AVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDH VYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACSTHAVFSPPAIE RLSSGLFQEVIITNTIPVYEHNYFPQLTVLSVANLLGETIWRVHDDCSGGFEPYSTLG ID" CDS join(97978..98070,98183..98362,98571..98741,99298..99441, 99813..99980,100426..100495,100681..100762,101388..101547, 101884..101922) /locus_tag="TCM_042341" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015773t1" /codon_start=1 /product="Phosphoribosyltransferase family protein isoform 2" /protein_id="EOY17528.1" /db_xref="Phytozome:GSVIVT01018382001" /db_xref="TAIR:AT2G44530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42581" /translation="MASSLPCTPTSSLSPATLFKAHPRFPLRHRFRCNVVEPLKFDNG KPFFPFLTTDPALPTFLSSNSHLERSINKNDTRLRIFSGTANPALAQLQDSVRGCDVY LVQPTCPPANENLMELLIMVDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLV ANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSP DVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAG TIAKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVYEHNYFPQ LTVLSVANLLGETIWRVHDDCSGGFEPYSTLGID" gene 102476..105086 /locus_tag="TCM_042342" /note="dbxref CacaoGD:Thecc1EG042342" mRNA join(102476..103505,103870..103994,104178..104273, 104518..105086) /locus_tag="TCM_042342" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29709.m001222" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006624t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s17790.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg605t2" CDS join(102681..103505,103870..103994,104178..104273, 104518..104746) /locus_tag="TCM_042342" /note="paralog of Thecc1EG006624t1" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY17529.1" /db_xref="Phytozome:POPTR_0014s17790.1" /db_xref="TAIR:AT5G58230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22467" /translation="MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPS LTVEWLPDRDEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLQDSENDARHYDHD RSDLGGFGCASGKVQIIQQINHEGEVNRARYMPQNPFIIATKTVSAEVFVFDYSKHPS KPPLDGACSPDLRLRGHSTEGYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLD ATQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVTKPIQSVVAHQSEV NCLAFNPFNEWVVATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILA SCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIAS VAEDNILQIWQMAENIYHDEDDIPGDESTKGS" gene complement(105594..107375) /locus_tag="TCM_042343" /note="dbxref CacaoGD:Thecc1EG042343" mRNA complement(join(105594..106039,106131..106185, 106514..106610,107030..107375)) /locus_tag="TCM_042343" /product="DnaJ/Hsp40 cysteine-rich domain superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400027424" /inference="similar to AA sequence:Phytozome:Glyma02g44430.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00385t00002" CDS complement(join(105796..106039,106131..106185, 106514..106610,107030..107275)) /locus_tag="TCM_042343" /codon_start=1 /product="DnaJ/Hsp40 cysteine-rich domain superfamily protein, putative" /protein_id="EOY17530.1" /db_xref="Phytozome:Glyma02g44430.1" /db_xref="TAIR:AT3G17668.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IB50" /translation="MSMAVASAASLLTAVRLESWKSNGGVPARPRLSLAKPTWIIRTE AKPFSFSFSFPSLSIFHFPGQPNQPHQAYLFLRQNKIVSNVRRERVKKPNPPCVVCQG SGRVDCQYCYGRGRTNHVHLEMLPKGEWPKWCRTCGGSGLSYCSRCLGTGEYRYIMGF HFMKRDDDHTQDNKYQIQGDHGSQSAADRLLHHEQNNSDDEIERAGGNMDITA" gene complement(107842..116071) /locus_tag="TCM_042344" /note="dbxref CacaoGD:Thecc1EG042344" mRNA complement(join(107842..108352,108458..108697, 108792..108855,109108..109413,109603..109817, 110025..110319,110589..110753,111309..111959, 112262..112348,112523..114876,115853..116071)) /locus_tag="TCM_042344" /product="Multidrug resistance protein ABC transporter family" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s17830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025790t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s17830.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8134t6" CDS complement(join(108225..108352,108458..108697, 108792..108855,109108..109413,109603..109817, 110025..110319,110589..110753,111309..111959, 112262..112348,112523..114876,115853..115883)) /locus_tag="TCM_042344" /note="paralog of Thecc1EG025790t1" /codon_start=1 /product="Multidrug resistance protein ABC transporter family" /protein_id="EOY17531.1" /db_xref="Phytozome:POPTR_0014s17830.1" /db_xref="TAIR:AT3G60160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IB53" /translation="MDVFTSFIATNSKFLQFPETWMQLKSPCFWEEVSVIMQLGFIVI ALLHFVQKSVALMLKHSRKVANQAAKNYPIGAKVSFCYIASIVCSTLMLSIHFIKLLM LLNSMNDTHCNSILQAYSSEIMQLMSWAVTLIAVCKIPNKGHIRFPWILRAWWVCSFL LSIICTVLDTYSRTAEHGHLKMRDYADFIGLLASFLLLVISIRGKTGLVFIDSNNIAE PLLTGKTDKHSKQERESPYGRATLLQLITFSWLNPLFSVGVKKPLEQDEIPDVDVKDS AEFVSFAFDQNLKQIREKDGAANPSIYKAIFLFIRKKAAINALFAVISAGASYVGPYL IDDFVSFLAEKKTRNLESGYLLALAFLGAKMVETIAQRQWIFGARQLGLRLRAALISH IYKKGLVLSSQSRQSHTSGEIINYMSVDIQRITDFIWYLNIIWMLPIQISLAICILHT SLGLGSLAALAATLIVMSCNIPITRIQKRYQSKIMDAKDNRMKATAEVLRNMKTIKLQ AWDSQFLQKLKSLRKIEYEWLWKSLRLAAISAFIFWGSPTFISVVTFGACMMMGIQLT AGRVLSALATFRMLQDPIFNLPDLLSVIAQGKVSADRVASYLQEEEIQQDAIKYVPKD QTEFEVEIDNGKFSWDPESGNPTLDGVQLKVKRGMKVAICGTVGSGKSSLLSCILGEI QKLSGTIKISGTKAYVPQSPWILTGNIRENILFGNPYDYNKYDRTVKACALTKDLELF SCGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTQLFEDCL MGILKDKTTLYVTHQVEFLPAADIILVMQNGRIAQAGTFEELLKQNIGFEVLVGAHSK ALQSVLTVENSSRISQDPPTDGESNTDSTSNAQLLQTQQGSEHNLPLEITENGGKLVQ DEEREKGSIGKEVYWSYLTTVKGGLLIPIILVAQSSFQVLQIASNYWMAWASPPTSET EPTFGMNFILLVYSLLAVGSSLCVLVRAMVVAVAGLWTAQKLFINMLHSILRAPMAFF DSTPAGRILNRASTDQSVLDLEMATKLGWCAFSIIQILGTIAVMSQVAWEVFVIFIPV TAICIWYQQYYIPTARELARLAGIQRAPILHHFAESLAGAATIRAFDQENRFIDANLG LIDNHSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVVLVTLPEGIINPSIAGLAVTYG INLNVLQASVIWNICNAENKMISVERILQYSNLASESALEIEECRPPNNWPEVGTICF RNLQIRYAEHLPSVLKNISCTFPGRKKIGVVGRTGSGKSTLIQAIFRIVEPREGSIII DNVDISKIGLHDLRSRLSIIPQDPTMFEGTVRGNLDPLVQYSDNEVWEALDKCQLGEL VRAKQEKLDATVVENGENWSVGQRQLFCLGRALLKKSSVLVLDEATASVDSATDGVIQ KIISQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRVAEFDTPAKLLEREDSFFSKLIK EYSMRSKSLNSLANLHI" gene complement(118424..129971) /locus_tag="TCM_042345" /note="dbxref CacaoGD:Thecc1EG042345" mRNA complement(join(118424..119314,119685..119804, 119930..119992,120173..120246,120331..120370, 120479..120619,120712..120804,120895..120972, 121430..121581,121661..121730,122382..122549, 122681..122785,122897..122969,123102..123223, 123402..123476,124155..124400,124484..124618, 124811..124867,124960..125070,125158..125278, 125405..125460,125577..125732,126141..126206, 126563..126645,126847..126943,127072..127182, 127364..127496,127931..127992,128070..128123, 128227..128436,128695..128745,128951..129169, 129253..129408,129496..129971)) /locus_tag="TCM_042345" /product="DNA replication helicase dna2 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene03015" /inference="similar to AA sequence:Phytozome:POPTR_0014s17840.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b040855t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7949t10" mRNA complement(join(118424..119314,119685..119804, 119930..120064,120173..120246,120331..120370, 120479..120619,120712..120804,120895..120972, 121430..121581,121661..121730,122382..122549, 122681..122785,122897..122969,123102..123223, 123402..123476,124155..124400,124484..124618, 124811..124867,124960..125070,125158..125278, 125405..125460,125577..125732,126141..126206, 126563..126645,126847..126943,127072..127182, 127364..127496,127931..127992,128070..128123, 128227..128436,128695..128745,128951..129169, 129253..129408,129496..129971)) /locus_tag="TCM_042345" /product="DNA replication helicase, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene03015" /inference="similar to AA sequence:Phytozome:POPTR_0014s17840.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7949t10" mobile_element complement(118484..118767) /note="source:CACAO_on_E373_scaffold_1 2 275" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS complement(join(119150..119314,119685..119804, 119930..119992,120173..120246,120331..120370, 120479..120619,120712..120804,120895..120972, 121430..121581,121661..121730,122382..122549, 122681..122785,122897..122969,123102..123223, 123402..123476,124155..124400,124484..124618, 124811..124867,124960..125070,125158..125278, 125405..125460,125577..125732,126141..126206, 126563..126645,126847..126943,127072..127182, 127364..127496,127931..127992,128070..128123, 128227..128436,128695..128745,128951..129169, 129253..129408,129496..129915)) /locus_tag="TCM_042345" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA replication helicase dna2 isoform 2" /protein_id="EOY17533.1" /db_xref="Phytozome:POPTR_0014s17840.1" /db_xref="TAIR:AT1G08840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GVH0" /translation="MPPRRKINSSSSSKKPNVSNQQSQPSKFGIQHFFERHTQNALVA THNHPSSPPNALLSAAPKSPIPDHNPLSSSNANAAALPLPLEAASSAVVSHSASQNPK IDSDSSADKPPAIDVNVEVSPSVSKSTSLKRFNFSPGMLIKQSQDDGGDVVTWKISPV NERLQALSKHMPVLADSSKHDSFSINQCSQNKGLNMSAKVDKWLSSPSPKADKKSLVS DNRVGLKRANPFQDTEVSERIADEKTSLASRQSPFRTPPSLPYCPDKLTNGITSDQLG LRQHKKALLALLDQVEDVISVEDFVSTESEPYSSDAQDGQPNEMPVIADSVVKGAGMG PPHEVSETSSNGYFLVLEVSEKRTFSESVGLQCPYKVLRLVNEKCGEERAVYLWEEWS YTVVAPGDTVNVIGEFDDEGKCNVDHENNFLILHPDILVSGTRVAASFSCPRRTVLDE RLRCNEHSTAALIGTLLHQIFQAGLVKEAPTIHFLEEYARLVLQKNMESLYACGVNEN EIYKTLTEAIPKLVNWIVLFKDSEDPKVPTVDFGSDNGPKKVNIFEVIDIEEMAWAPK YGLKGMIDVSVRVKIESGGKEDNEKIMPLEFKTGKMPKGQSSMEHCAQVILYTLLMSE RYLKCIDSGLLYYLQSDQTQVSKLPSVLWISIFKAMKHLLMGIVVRRSDLVGLIMRRN ELANDILKALTTQQLPPMLQIPSMCKGCRHLDVCTIYHKALGGDTESSGLGDVFDSHV HHFSNAHGVFLRHWDRLIDLEAKEMQLVKKDLWHSRNLKSDDCTGCLSSLVLDELPHQ KSHKENRFIYHFVCRHSPASNLNGSDRNPISAASSLTKDLDCTLKCGDYVILSTESGH QIVASGVIVEISPVRVSVSFSKCLRLPGGNLSSMTEKLFQEVWRIDKDEVMTSFSIMR FNLIQIFLQNEQSSHLRKMIVDLAAPRFDSGCIFSQDPAISYVWSEKSLNDDQRRAIL KILTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTNSAVDNLLIKLKSQS IDFVRIGRHESVHEEIKGHCFSGMNLSSIEEIKVKFDKVKVVAVTCLGITSPFLSGKK FDVCIIDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSAEARENGMGISLFCIL SEAHPHAISPLQSQYRMCESIMGLSNALVYGDRLRCGSPEVANAKLKFSRPNASCSSW LKAVLNPGRPVIFVNTDLLPAFEARDHKTVNNPMEAYIIAEANLIRHACIASVETHTI DKYQGRDKDCILVSFVRSNENPRKCSSSLLADWHRINVALTRAKKKLIMVGSCRTLSK VPMLKLLIDKVDEQSGVMNMSKKDINHKAVLKRCSQIRSL" CDS complement(join(119150..119314,119685..119804, 119930..120064,120173..120246,120331..120370, 120479..120619,120712..120804,120895..120972, 121430..121581,121661..121730,122382..122549, 122681..122785,122897..122969,123102..123223, 123402..123476,124155..124400,124484..124618, 124811..124867,124960..125070,125158..125278, 125405..125460,125577..125732,126141..126206, 126563..126645,126847..126943,127072..127182, 127364..127496,127931..127992,128070..128123, 128227..128436,128695..128745,128951..129169, 129253..129408,129496..129915)) /locus_tag="TCM_042345" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA replication helicase, putative isoform 1" /protein_id="EOY17532.1" /db_xref="Phytozome:POPTR_0014s17840.1" /db_xref="TAIR:AT1G08840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GVH0" /translation="MPPRRKINSSSSSKKPNVSNQQSQPSKFGIQHFFERHTQNALVA THNHPSSPPNALLSAAPKSPIPDHNPLSSSNANAAALPLPLEAASSAVVSHSASQNPK IDSDSSADKPPAIDVNVEVSPSVSKSTSLKRFNFSPGMLIKQSQDDGGDVVTWKISPV NERLQALSKHMPVLADSSKHDSFSINQCSQNKGLNMSAKVDKWLSSPSPKADKKSLVS DNRVGLKRANPFQDTEVSERIADEKTSLASRQSPFRTPPSLPYCPDKLTNGITSDQLG LRQHKKALLALLDQVEDVISVEDFVSTESEPYSSDAQDGQPNEMPVIADSVVKGAGMG PPHEVSETSSNGYFLVLEVSEKRTFSESVGLQCPYKVLRLVNEKCGEERAVYLWEEWS YTVVAPGDTVNVIGEFDDEGKCNVDHENNFLILHPDILVSGTRVAASFSCPRRTVLDE RLRCNEHSTAALIGTLLHQIFQAGLVKEAPTIHFLEEYARLVLQKNMESLYACGVNEN EIYKTLTEAIPKLVNWIVLFKDSEDPKVPTVDFGSDNGPKKVNIFEVIDIEEMAWAPK YGLKGMIDVSVRVKIESGGKEDNEKIMPLEFKTGKMPKGQSSMEHCAQVILYTLLMSE RYLKCIDSGLLYYLQSDQTQVSKLPSVLWISIFKAMKHLLMGIVVRRSDLVGLIMRRN ELANDILKALTTQQLPPMLQIPSMCKGCRHLDVCTIYHKALGGDTESSGLGDVFDSHV HHFSNAHGVFLRHWDRLIDLEAKEMQLVKKDLWHSRNLKSDDCTGCLSSLVLDELPHQ KSHKENRFIYHFVCRHSPASNLNGSDRNPISAASSLTKDLDCTLKCGDYVILSTESGH QIVASGVIVEISPVRVSVSFSKCLRLPGGNLSSMTEKLFQEVWRIDKDEVMTSFSIMR FNLIQIFLQNEQSSHLRKMIVDLAAPRFDSGCIFSQDPAISYVWSEKSLNDDQRRAIL KILTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTNSAVDNLLIKLKSQS IDFVRIGRHESVHEEIKGHCFSGMNLSSIEEIKVKFDKVKVVAVTCLGITSPFLSGKK FDVCIIDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSAEARENGMGISLFCIL SEAHPHAISPLQSQYRMCESIMGLSNALVYGDRLRCGSPEVANAKLKFSRPNASCSSW LKAVLNPGRPVIFVNTDLLPAFEARDHKTVNNPMEAYIIAEITDGLVNNGIEAKDIGI ITPYNSQANLIRHACIASVETHTIDKYQGRDKDCILVSFVRSNENPRKCSSSLLADWH RINVALTRAKKKLIMVGSCRTLSKVPMLKLLIDKVDEQSGVMNMSKKDINHKAVLKRC SQIRSL" mobile_element 119359..119616 /note="source:CACAO_MITE5_scaffold_1 1 269" /mobile_element_type="transposon:TIR/MITE" gene complement(130180..133301) /locus_tag="TCM_042346" /note="dbxref CacaoGD:Thecc1EG042346" mRNA complement(join(130180..130683,130928..131113, 131235..131287,131654..131754,132401..132493, 133052..133301)) /locus_tag="TCM_042346" /product="Auxin efflux carrier family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034808t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026431001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13075t00001" CDS complement(join(130559..130683,130928..131113, 131235..131287,131654..131754,132401..132493, 133052..133246)) /locus_tag="TCM_042346" /note="paralog of Thecc1EG034808t1" /codon_start=1 /product="Auxin efflux carrier family protein, putative" /protein_id="EOY17534.1" /db_xref="Phytozome:GSVIVT01026431001" /db_xref="TAIR:AT1G20925.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJY7" /translation="MRVSANCDVEEIKTNDCTITVKSSGETTEILSETFTEPLLSSNG CPSHSIYQVDLPQIGDEGKEKISTFGKMKQYFMAVIRSKSLKMIFAPSTIAAIVGFII GIVSPIRKALIGDSAALHVIYSSTELIGEAGIPSITLIVGANLLKGLRGSGVGASLIV GIIVIRTILLPASGILVVKAASYIGVVESDSFYQFTPLLQYAIPPAVNIGTISQMLGS GEREFSVLMLWNYVVAAFSLTLWTAFYMWLVT" gene complement(133425..135691) /locus_tag="TCM_042347" /note="dbxref CacaoGD:Thecc1EG042347" mRNA complement(join(133425..133737,134253..134364, 134961..135060,135219..135691)) /locus_tag="TCM_042347" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043518t1" /inference="similar to AA sequence:ricco:29682.m000577" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(join(133589..133737,134253..134364, 134961..135060,135219..135229)) /locus_tag="TCM_042347" /note="dbxref ricco:29682.m000577; paralog of Thecc1EG043518t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17535.1" /translation="MLLRDRSPNRTTGYRIVVSVISVQCSQWLLLLTRATEVCGICHV SVLGRDRWILVKIARTPRHLQGLVIACSSAANLGNMLLIILPAICEETNSPFGDSSTC AAYGEAYASLSLAILSKTFDP" mobile_element complement(134191..134229) /note="source:CACAO_LINE_E_74_scaffold_2 2064 2102" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 134325..137064 /note="source:CACAO_on_SS_E42_scaffold_2 19410 22116" /mobile_element_type="transposon:TIR/Mutator" gene complement(139928..142606) /locus_tag="TCM_042348" /note="dbxref CacaoGD:Thecc1EG042348" mRNA complement(join(139928..140521,140611..141537, 141648..141926,142499..142606)) /locus_tag="TCM_042348" /product="Zinc ion binding isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s35170.1" /inference="similar to AA sequence:ricco:29709.m001217" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc575t5; alternateUTRof:Thecc1EG042348t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg51t1" mRNA complement(join(140081..140521,140611..141537, 141648..141835,142499..142606)) /locus_tag="TCM_042348" /product="Zinc ion binding isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s35170.1" /inference="similar to AA sequence:ricco:29709.m001217" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg51t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg51t1" CDS complement(join(140419..140521,140611..141537, 141648..141811)) /locus_tag="TCM_042348" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29709.m001217" /codon_start=1 /product="Zinc ion binding isoform 1" /protein_id="EOY17536.1" /db_xref="TAIR:AT2G44580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IU60" /translation="MMEQPQPCCKGAEVLLNLQPTSSVWIQYHRLFGPHDDLVLLELD EKLLPDVLYQRVTLRGQPDEDAVFCTKSKTYSVKLVGTSNSVFLVPHADYSTFCENSQ DCDGEDYKQQVGASVIKVASGNMELVEVAPRLDKLKSIISENLYSSDEALVMEDLEFM ERSMRRLYTWDDLTNMVQASDDELRSGLKALSALEIDGYWRIVDQKYMDMILRMLLHN SVLNDWSLNTLIEDEVVSVLESDGFPRKLAYHCLHVYGSRVEEVMDKGVWRMDARRVC VHFAREILREGKRKMESFMEEWTRKIPEEMQASFDMLEGEVLTEKVGVETWVHAFSVS SLPSTPAERFSILFKERPKWEWKDLEPYVRDLNVPGLSSEALLLKYTRRTQPTIDAEP VFSAR" CDS complement(join(140419..140521,140611..141537, 141648..141811)) /locus_tag="TCM_042348" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29709.m001217" /codon_start=1 /product="Zinc ion binding isoform 1" /protein_id="EOY17537.1" /db_xref="TAIR:AT2G44580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IU60" /translation="MMEQPQPCCKGAEVLLNLQPTSSVWIQYHRLFGPHDDLVLLELD EKLLPDVLYQRVTLRGQPDEDAVFCTKSKTYSVKLVGTSNSVFLVPHADYSTFCENSQ DCDGEDYKQQVGASVIKVASGNMELVEVAPRLDKLKSIISENLYSSDEALVMEDLEFM ERSMRRLYTWDDLTNMVQASDDELRSGLKALSALEIDGYWRIVDQKYMDMILRMLLHN SVLNDWSLNTLIEDEVVSVLESDGFPRKLAYHCLHVYGSRVEEVMDKGVWRMDARRVC VHFAREILREGKRKMESFMEEWTRKIPEEMQASFDMLEGEVLTEKVGVETWVHAFSVS SLPSTPAERFSILFKERPKWEWKDLEPYVRDLNVPGLSSEALLLKYTRRTQPTIDAEP VFSAR" gene complement(144510..145701) /locus_tag="TCM_042350" /note="dbxref CacaoGD:Thecc1EG042350" mRNA complement(join(144510..144847,145211..145701)) /locus_tag="TCM_042350" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS complement(join(144766..144847,145211..145413)) /locus_tag="TCM_042350" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17538.1" /translation="MTFPLPWEVTFPRESHPLWIGRWHFQVFLVSVTWTLNQKRGWRI DFLVHGVEFHLFINCCNFSCLICRPTSISSPVTSDSVSSIDLPLSLFSLN" mobile_element 145027..145081 /note="source:scaffold_5_CACTA_0607 4781 4843" /mobile_element_type="transposon:TIR/CACTA" gene 146236..151513 /locus_tag="TCM_042351" /note="dbxref CacaoGD:Thecc1EG042351" mRNA join(146236..146333,146456..146679,146843..147075, 147856..148075,148937..149312,149403..149510, 149636..149836,150067..150165,150270..150443, 150554..151513) /locus_tag="TCM_042351" /product="Fatty acid hydroxylase superfamily isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s15110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006142t2" /inference="similar to AA sequence:Phytozome:GSVIVT01018423001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00570t00001" CDS join(146274..146333,146456..146679,146843..147075, 147856..148075,148937..149312,149403..149510, 149636..149836,150067..150165,150270..150443, 150554..150730) /locus_tag="TCM_042351" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG006142t2" /codon_start=1 /product="Fatty acid hydroxylase superfamily isoform 1" /protein_id="EOY17539.1" /db_xref="Phytozome:GSVIVT01018423001" /db_xref="TAIR:AT1G02205.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HVX9" /translation="MASKPGILTDWPWTPLGSFKYIILVPWITESIYSFIANDENERD FSNLSIFPFMLWRMFHNQIWISLSRYRTATGSNRIVDKGLEFDQVDRERNWDDQILFN AILFYLGNKYVPGSSHLPLWRTDGVILTILLHAGPVEFLYYWLHRALHHHFLYSRYHS HHHSSIVTEPITSVIHPFAEHIAYFALFAIPLSTIALSGTASIAAIAGYITYVDLMNN MGHCNFELIPNWLFSVFPPLKYLMYTPSYHSLHHTQFRTNYALFMPFYDYIYGTMDKS SDTLYENSLERKEESPDVVHLTHLTTPESIYHLRLGFASLASKPYSSTWYLCLLWPLT FWFMILTCFYGRTFVVERSRFDKIRLQTWAIPKYKIQYHLKWQKESINNLIQEAILEA KEKGARVLSLGLLNQVEELNRYGELYVHKHPQLKVKLVDGSSLAVAVVLNSIPKGTTQ VLLRGNLSKVAYAVAFALCQKGIQVAVLREDEYEKLNKSLGTKSEGNLVISKGYFYKT WLVGDDLSEEEQRKATKGTLFIPFSQFPPKKLRKDCFYHTTPAMQTPMSLENVDSCEN WLPRRVMSVWRIAGIVHALEGWEEHECGYTMSNIEKVWEASVKHGFQPLRVPTQSKS" mRNA join(146311..146679,146843..147075,147856..148075, 148937..149312,149403..149510,149636..150165) /locus_tag="TCM_042351" /product="Fatty acid hydroxylase superfamily isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006142t4" /inference="similar to AA sequence:Phytozome:GSVIVT01018422001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7918t7" CDS join(146555..146679,146843..147075,147856..148075, 148937..149312,149403..149510,149636..150037) /locus_tag="TCM_042351" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG006142t4" /codon_start=1 /product="Fatty acid hydroxylase superfamily isoform 2" /protein_id="EOY17540.1" /db_xref="Phytozome:GSVIVT01018422001" /db_xref="TAIR:AT1G02205.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HVX9" /translation="MLWRMFHNQIWISLSRYRTATGSNRIVDKGLEFDQVDRERNWDD QILFNAILFYLGNKYVPGSSHLPLWRTDGVILTILLHAGPVEFLYYWLHRALHHHFLY SRYHSHHHSSIVTEPITSVIHPFAEHIAYFALFAIPLSTIALSGTASIAAIAGYITYV DLMNNMGHCNFELIPNWLFSVFPPLKYLMYTPSYHSLHHTQFRTNYALFMPFYDYIYG TMDKSSDTLYENSLERKEESPDVVHLTHLTTPESIYHLRLGFASLASKPYSSTWYLCL LWPLTFWFMILTCFYGRTFVVERSRFDKIRLQTWAIPKYKIQYHLKWQKESINNLIQE AILEAKEKGARVLSLGLLNQVEELNRYGELYVHKHPQLKVKLVDGSSLAVAVVLNSIP KGTTQVLLRGNLSKVAYAVAFALCQKGIQVVGHPFACYCSLLGSPKKGQVTPSAYNAN CQLRLTFCPFFICLTPLEALTLIMHCFLTVSHFLISS" mobile_element 148530..148607 /note="source:CACAO_MITE_S4_scaffold_1 4 87" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(152899..153277) /note="source:scaffold_8_CACTA_0867 7799 8181" /mobile_element_type="transposon:TIR/CACTA" gene complement(153212..154374) /locus_tag="TCM_042352" /note="dbxref CacaoGD:Thecc1EG042352" mRNA complement(153212..154374) /locus_tag="TCM_042352" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s04270.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage" CDS complement(153711..154187) /locus_tag="TCM_042352" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY17541.1" /translation="MKPLVAMRDHLEFITEIGTSLATSSWKNKTLVLTIIFFAISLCA KFVWFSKDRLPVFTFHYNPSRIGAAPTPYCSVCLYEAEDGERLRRLPRCNHCFHVDCI DTWFQNRPTCPLCRNEVSVRRRQNQRGLFSSIILSILQNLFRKMSSRPLNFTSTLI" gene 154956..156127 /locus_tag="TCM_042353" /note="dbxref CacaoGD:Thecc1EG042353" mRNA join(154956..155288,155533..156127) /locus_tag="TCM_042353" /product="Ribosomal L18p/L5e family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g031340.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011555t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026787001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15492t00001" mRNA join(155046..155288,155549..156044) /locus_tag="TCM_042353" /product="Structural constituent of ribosome isoform 2" /inference="alignment:exonerate-protein:2:frave:gene03097" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g031340.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011555t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026787001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02861t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc18366t4; inference alignment:Newbler:10:TSA:cgbaP2_g15492t00001" CDS join(155130..155288,155533..155928) /locus_tag="TCM_042353" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011555t1" /codon_start=1 /product="Ribosomal L18p/L5e family protein isoform 1" /protein_id="EOY17542.1" /db_xref="Phytozome:GSVIVT01026787001" /db_xref="TAIR:AT3G20230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJX6" /translation="MDGSIYSSSSTSVLLSPQSTYPSWHLKTNSLSWSSSLPKLHLST PTPIPIRRKDFTVSAAWTRRSRGEVAKRPNRKSWKQRTDMYMRPFLLNVFFSKRFIHA KVMHRNTSKVISVASTNAKDLRYTLPSLTDDNACRVIGKLIAERSMEADVFAMSYEPQ KNVTIQGKLGILLDTIKESGIIFY" CDS join(155225..155288,155549..155928) /locus_tag="TCM_042353" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011555t1" /codon_start=1 /product="Structural constituent of ribosome isoform 2" /protein_id="EOY17543.1" /db_xref="Phytozome:GSVIVT01026787001" /db_xref="TAIR:AT3G20230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B6TUI1" /translation="MVFLLTQASPLYSHSHSHPPQAAWTRRSRGEVAKRPNRKSWKQR TDMYMRPFLLNVFFSKRFIHAKVMHRNTSKVISVASTNAKDLRYTLPSLTDDNACRVI GKLIAERSMEADVFAMSYEPQKNVTIQGKLGILLDTIKESGIIFY" gene complement(155953..160011) /locus_tag="TCM_042355" /note="dbxref CacaoGD:Thecc1EG042355" mRNA complement(join(155953..156291,157075..157146, 157234..157341,157467..157547,157679..157835, 158519..158636,158772..158823,159021..159077, 159577..159727)) /locus_tag="TCM_042355" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s13570.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043327t1" /inference="similar to AA sequence:Phytozome:Glyma03g24600.4" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00321t00001; inference alignment:Newbler:10:TSA:cgbaB_g11724t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc148t6" mRNA complement(join(156135..156336,156416..156470, 157075..157146,157234..157341,157467..157547, 157679..157835,158519..158636,158772..158823, 159021..159077,159577..159728)) /locus_tag="TCM_042355" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s13570.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043327t1" /inference="similar to AA sequence:Phytozome:Glyma07g12840.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02332t00001; alternateUTRof:Thecc1EG042355t1; inference alignment:Newbler:10:TSA:cgbaB_g11724t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc148t6" CDS complement(join(156256..156291,157075..157146, 157234..157341,157467..157547,157679..157835, 158519..158636,158772..158823,159021..159047)) /locus_tag="TCM_042355" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG043327t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /protein_id="EOY17546.1" /db_xref="Phytozome:Glyma03g24600.4" /db_xref="TAIR:AT5G26667.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PHR2" /translation="MGTVDAANKDVNVSLTDEKPIVVFVLGGPGSGKGTQCANIVQHF LYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMLESGNDKFLI DGFPRNEENRAAFEAVTKIEPDFVLFFKCPEEEMERRLLSRNQGREDDNIETIRKRFN VFLESSLPVIQYYKAKGKVREIDAAKPIEEVFEAVKVVFTPKGEKALYHIAFAILC" mRNA complement(join(156307..156336,156416..156470, 157075..157146,157234..157341,157467..157547, 157679..157835,158519..158636,158772..158823, 159021..159077,159577..160011)) /locus_tag="TCM_042355" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s13570.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043327t1" /inference="similar to AA sequence:Phytozome:Glyma07g12840.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11724t00001" CDS complement(join(156459..156470,157075..157146, 157234..157341,157467..157547,157679..157835, 158519..158636,158772..158823,159021..159047)) /locus_tag="TCM_042355" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043327t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY17544.1" /db_xref="Phytozome:Glyma07g12840.1" /db_xref="TAIR:AT5G26667.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PHR2" /translation="MGTVDAANKDVNVSLTDEKPIVVFVLGGPGSGKGTQCANIVQHF LYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMLESGNDKFLI DGFPRNEENRAAFEAVTKIEPDFVLFFKCPEEEMERRLLSRNQGREDDNIETIRKRFN VFLESSLPVIQYYKAKGKVREIDAAKPIEEVFEAVKVVFTPKGEKVTA" CDS complement(join(156459..156470,157075..157146, 157234..157341,157467..157547,157679..157835, 158519..158636,158772..158823,159021..159047)) /locus_tag="TCM_042355" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043327t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY17545.1" /db_xref="Phytozome:Glyma07g12840.1" /db_xref="TAIR:AT5G26667.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PHR2" /translation="MGTVDAANKDVNVSLTDEKPIVVFVLGGPGSGKGTQCANIVQHF LYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMLESGNDKFLI DGFPRNEENRAAFEAVTKIEPDFVLFFKCPEEEMERRLLSRNQGREDDNIETIRKRFN VFLESSLPVIQYYKAKGKVREIDAAKPIEEVFEAVKVVFTPKGEKVTA" gene complement(160099..165211) /locus_tag="TCM_046942" /note="dbxref CacaoGD:Thecc1EG046942" mRNA complement(join(160099..160620,160880..161266, 161361..161411,161529..161754,162202..162272, 162353..162472,162556..162750,162889..162953, 163054..163144,163496..163557,163648..163698, 163776..163877,164111..164218,164309..164372, 164503..165211)) /locus_tag="TCM_046942" /product="DYNAMIN-like 1E" /inference="alignment:exonerate- protein:2:frave:gene03090.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015794t2" /inference="similar to AA sequence:ricco:29709.m001211" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg525t4" CDS complement(join(160492..160620,160880..161266, 161361..161411,161529..161754,162202..162272, 162353..162472,162556..162750,162889..162953, 163054..163144,163496..163557,163648..163698, 163776..163877,164111..164218,164309..164372, 164503..164643)) /locus_tag="TCM_046942" /note="dbxref ricco:29709.m001211; paralog of Thecc1EG015794t2" /codon_start=1 /product="DYNAMIN-like 1E" /protein_id="EOY17547.1" /db_xref="TAIR:AT3G60190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNX5" /translation="MTTMESLIGLVNRIQRACTVLGDYGGGDNAFSSLWEALPSVAVV GGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDQSSQEYAEFLHLPKRRFT DFAMVRKEIQDETDRMTGKTKQISPVPIHLSIYSPHVVNLTLIDLPGLTKVAVEGQPE SIVQDIETMVRSYVEKPNCIILAISPANQDIATSDAIKIAREVDPSGDRTFGVLTKLD LMDKGTNALDVLEGRSYRLQQPWVGIVNRSQADINKNVDMIVARRKEREYFATSPDYS HLASKMGSEYLAKLLSQHLESVIRARIPSITSLINKSIDELESEMDHLGRPIALDAGA QLYTILELCRAFDRIFKEHLDGGRPGGDRVYGVFDNQLPAALRKLPFDRHLSLQNVRR VVSEADGYQPHLIAPEQGYRRLIEGALNYFRGPAEASVDAVHFVLKELVRKSVGETQE LKRFPTLQAEIAAAANEALERFRDESKKTVIRLVDMESSYLTVDFFRRLPQEVDKGGN PAAAAAATATNTDRYGEGHFRRIGSNVSSYVGMVSETLKNTIPKAVVYCQVREAKQSL LNRFYTLLGKKEAKQLSQLLDEDPALMERRQQCAKRLELYKAARDEIDSVSWAR" mobile_element 162027..162039 /note="source:CACAO_on_E452_scaffold_2 326 414" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(162040..162109) /note="source:CACAO_MITE150_scaffold_9 1 70" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(162041..162120) /note="source:INTACT1_F64_scaffold_3-int 1186 1265" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(163397..163443) /note="source:CACAO_M_E49556_F134_scaffold_7 2055 2102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 165335..165410 /note="source:CACAO_M_E34420_F305_scaffold_5 1443 1512" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 165338..165436 /note="source:scaffold_6_CACTA_0706 1427 1509" /mobile_element_type="transposon:TIR/CACTA" gene complement(165421..173023) /locus_tag="TCM_046943" /note="dbxref CacaoGD:Thecc1EG046943" mRNA complement(join(165421..165726,165817..165937, 166041..166103,166518..166589,166680..166734, 167041..167127,167240..167312,167742..167807, 168045..168158,168695..168806,169345..169451, 169714..169797,169895..169998,170207..170267, 170715..170843,171460..171627,172253..172371, 172527..172623,172784..173023)) /locus_tag="TCM_046943" /product="NAD-dependent malic enzyme 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s13630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005393t2" /inference="similar to AA sequence:Phytozome:POPTR_0002s13630.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01615t00001; inference alignment:Newbler:10:TSA:cgbaB_g01615t00001" CDS complement(join(165652..165726,165817..165937, 166041..166103,166518..166589,166680..166734, 167041..167127,167240..167312,167742..167807, 168045..168158,168695..168806,169345..169451, 169714..169797,169895..169998,170207..170267, 170715..170843,171460..171627,172253..172371, 172527..172623,172784..172963)) /locus_tag="TCM_046943" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005393t2" /codon_start=1 /product="NAD-dependent malic enzyme 1 isoform 1" /protein_id="EOY17548.1" /db_xref="Phytozome:POPTR_0002s13630.1" /db_xref="TAIR:AT2G13560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P37221" /translation="MSNCWNQTRAATSLIRRLKRSIINPAAVARPRCFTTAEGHRPSL VHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNIMSPEQQIERFMVDLKRLEVQ ARDGPSDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGL FRRPRGMYFSAEDRGEMMSMVYNWPADQVDMIVVTDGSRILGLGDLGVQGIGIAIGKL DLYVAAAGINPQRVLPVMIDVGTNNEKLLKDPLYLGLQQHRLDGDEYIAVIDEFMEAV FTRWPNVIVQFEDFQSKWAFKLLQRYRNTYRMFNDDVQGTAGVAIAGLLGAVRAQGRP MIDFPKQKIVVAGAGSAGIGVLNAARKTMARMLGNNETAFDSAKSQFWVVDANGLITE ERENIDPVALPFARKIKEAGRQGLREGASLVEVVEQVKPDVLLGLSAVGGLFSKEVLE ALKGSTSTRPAIFAMSNPTKNAECTPEEAFSIVGDNIIFASGSPFRDVNLGDGHVGHC NQGNNMYLFPGIGLGTLLSGSRIISDGMLQAAAERLAAYMSEEEVLKGIIYPPISKIR DITKEVAAAVVKEAVEEDLAEGYRDIDARELQKICQSQEELLEYVKNSMWSPEYPTLV YKKD" mRNA complement(join(166138..166589,166680..166734, 167041..167127,167240..167312,167742..167807, 168045..168158,168695..168806,169345..169451, 169714..169797,169895..169998,170207..170267, 170715..170843,171460..171627,172253..172371, 172527..172623,172784..173023)) /locus_tag="TCM_046943" /product="NAD-dependent malic enzyme 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s13630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005393t2" /inference="similar to AA sequence:Phytozome:POPTR_0002s13630.1" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01615t00002; inference alignment:Newbler:10:TSA:cgbaB_g01615t00001" CDS complement(join(166490..166589,166680..166734, 167041..167127,167240..167312,167742..167807, 168045..168158,168695..168806,169345..169451, 169714..169797,169895..169998,170207..170267, 170715..170843,171460..171627,172253..172371, 172527..172623,172784..172963)) /locus_tag="TCM_046943" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005393t2" /codon_start=1 /product="NAD-dependent malic enzyme 1 isoform 2" /protein_id="EOY17549.1" /db_xref="Phytozome:POPTR_0002s13630.1" /db_xref="TAIR:AT2G13560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P37221" /translation="MSNCWNQTRAATSLIRRLKRSIINPAAVARPRCFTTAEGHRPSL VHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNIMSPEQQIERFMVDLKRLEVQ ARDGPSDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGL FRRPRGMYFSAEDRGEMMSMVYNWPADQVDMIVVTDGSRILGLGDLGVQGIGIAIGKL DLYVAAAGINPQRVLPVMIDVGTNNEKLLKDPLYLGLQQHRLDGDEYIAVIDEFMEAV FTRWPNVIVQFEDFQSKWAFKLLQRYRNTYRMFNDDVQGTAGVAIAGLLGAVRAQGRP MIDFPKQKIVVAGAGSAGIGVLNAARKTMARMLGNNETAFDSAKSQFWVVDANGLITE ERENIDPVALPFARKIKEAGRQGLREGASLVEVVEQVKPDVLLGLSAVGGLFSKEVLE ALKGSTSTRPAIFAMSNPTKNAECTPEEAFSIVGDNIIFASGSPFRDVNLGDGHVGHC NQGNNMYLFPGIGLGTLLSGSRIISDGMLQAAAERCVSFVFCF" gene 173522..174291 /locus_tag="TCM_042359" /note="dbxref CacaoGD:Thecc1EG042359" mRNA join(173522..173728,174263..174291) /locus_tag="TCM_042359" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc590t1_C2" CDS 173537..173719 /locus_tag="TCM_042359" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17550.1" /translation="MTQADITSLVDLYNLFTTDKMHRKVHQRQKCLLLVAPFPSLTMP ACQGSSTIMIMLIPSC" gene 173902..175481 /locus_tag="TCM_042360" /note="dbxref CacaoGD:Thecc1EG042360" mRNA join(173902..173927,174263..175481) /locus_tag="TCM_042360" /product="Basic-leucine zipper transcription factor family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001468001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006625t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s05750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc585t5; alternateUTRof:Thecc1EG042360t1; inference alignment:Newbler:10:TSA:cgbaL_g07922t00001" mRNA 174117..175206 /locus_tag="TCM_042360" /product="Basic-leucine zipper transcription factor family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001468001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006625t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s05750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07922t00001; inference alignment:Newbler:10:TSA:cgbaL_g07922t00001" CDS 174338..175075 /locus_tag="TCM_042360" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG006625t3" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein isoform 1" /protein_id="EOY17551.1" /db_xref="Phytozome:POPTR_0001s05750.1" /db_xref="TAIR:AT2G16770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HHY8" /translation="MDDGEVELSDHVLLSNPDSSSNLLDSTSVDLIIDEFFKNTRTCT HTHTCNPPGPDTAHTHTCYHTHTQVITSEEDDHQNNKNSSSLKPRRPSGNREAVRKYR EKKKAHTAYLEEEVKKLRLLNQQLVRKLQGQTILEAEVLRLRSLLVDLRAKIDGGLGV FPFQKQCNNATILKEGDCGVQSTDESIGLQCQTDLPCFHPHAGSSSQASIGGSEKMNI SWEGNCQPAIVNCQANINQMEVLKDTT" CDS 174338..175075 /locus_tag="TCM_042360" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG006625t3" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein isoform 1" /protein_id="EOY17552.1" /db_xref="Phytozome:POPTR_0001s05750.1" /db_xref="TAIR:AT2G16770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HHY8" /translation="MDDGEVELSDHVLLSNPDSSSNLLDSTSVDLIIDEFFKNTRTCT HTHTCNPPGPDTAHTHTCYHTHTQVITSEEDDHQNNKNSSSLKPRRPSGNREAVRKYR EKKKAHTAYLEEEVKKLRLLNQQLVRKLQGQTILEAEVLRLRSLLVDLRAKIDGGLGV FPFQKQCNNATILKEGDCGVQSTDESIGLQCQTDLPCFHPHAGSSSQASIGGSEKMNI SWEGNCQPAIVNCQANINQMEVLKDTT" gene complement(175984..177658) /locus_tag="TCM_042361" /note="dbxref CacaoGD:Thecc1EG042361" mRNA complement(join(175984..176097,176226..176333, 177578..177658)) /locus_tag="TCM_042361" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg59t2" CDS complement(join(176044..176097,176226..176330)) /locus_tag="TCM_042361" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17553.1" /translation="MGGSSVSMNDLDAWGPSRPHSFVGHIAHSMKSDREEYRFTRSTK RQDFLERK" gene 181245..187669 /locus_tag="TCM_042362" /note="dbxref CacaoGD:Thecc1EG042362" mRNA join(181245..181913,182239..183490,184156..184249, 184338..184589,184705..184861,185065..185415) /locus_tag="TCM_042362" /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20310.3" /inference="similar to AA sequence:Phytozome:POPTR_0003s20310.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7676t16; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg290t2" mRNA join(181318..181913,182239..183489,183606..183785, 183882..184067,184155..184249,184338..184603, 184705..184861,185065..185274,185389..185476, 185599..185822) /locus_tag="TCM_042362" /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20310.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040778t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20310.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc92t18; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg290t2" mRNA join(181318..181913,182239..183489,183606..183785, 183882..184061,184155..184249,184338..184603, 184705..184861,185065..185276) /locus_tag="TCM_042362" /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20310.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040778t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20310.3" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc92t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg290t2" mRNA join(181566..181913,182239..183489,183606..183785, 183882..184067,184155..184249,184338..184589, 185065..185274,185389..185476,185599..185760, 187398..187426) /locus_tag="TCM_042362" /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20310.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040778t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20310.3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc96t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg290t2" mRNA join(181566..181913,182239..183489,183606..183785, 183882..184067,184155..184249,184338..184861) /locus_tag="TCM_042362" /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20310.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040778t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20310.3" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc96t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg290t2" mRNA join(181566..181913,182239..183489,183606..183785, 184339..184861) /locus_tag="TCM_042362" /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20310.3" /inference="similar to AA sequence:Phytozome:POPTR_0003s20310.3" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7759t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg290t2" mRNA join(181653..181913,182239..183489,183606..183785, 183882..184061,184155..184249,184338..184589, 184705..184861,185065..185274,185389..185476, 185599..185756,187398..187669) /locus_tag="TCM_042362" /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20310.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040778t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20310.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg290t2" CDS join(182462..183489,183606..183785,183882..184061, 184155..184249,184338..184589,184705..184861, 185065..185274,185389..185461) /locus_tag="TCM_042362" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040778t1" /codon_start=1 /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 1" /protein_id="EOY17554.1" /db_xref="Phytozome:POPTR_0003s20310.1" /db_xref="TAIR:AT3G51950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HHY7" /translation="MDGYEATRIVFSRIQNLEPENASKIMGLLLIQDHGEKEMIRLAF GPEALVHSVVLKAKKELGLPTNSPTTPSTPSSPSPFLANNPNPVTVSRQSSSASRFLG NGAGVNLPPSLAIPTNPSTSSGSSSWSALSDLPNHDELISPSSGLNPSSLPFYGNGGA TDMIDEFQLQDQLSFLNEGSPNLNPKNHDLFYSQAADLSSSSAAAACGSTDAMGFPSY WGSSFHRKSSSVSDILGADDPASGFGWRPCLYFARGYCKNGNNCRFIHGALGESGSMV AGADGAAMVGSPNKVEMMDQCHELLRSKSAQQQRLAAVSQLMGSASFPYSPKCMNLFL QQQQNDTQRAAAALMMGDDMNKFNRSRLERNGFSINGEAGMINPASRQIYLTFPADST FREEDVSTYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL VKPYKEKGKVPDKKQQQPQVERGEFSPCGTPTGLDSRDPFDHQLGARMIYNSQDMLWR RKLEEQADLQQALELQNRRLMGLQLLDVKKHHHHRALSCGSPIPSPTHSPNLFSQSLV LPQFHNGQEAPQENCSSPAPAISVTAPEKQAASTANAAGKESASTEENGSGKESPHCE DGDLQESLEHNLPDSPFASPTKASGKYLSAFSDADVDKDASVSASSVNNNWVSSALLP ANNALDMASFNSYNCQLPRFSSGHGTIGMYAGTGGPTCPVGI" CDS join(182462..183490,184156..184249,184338..184589, 184705..184861,185065..185338) /locus_tag="TCM_042362" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 5" /protein_id="EOY17558.1" /db_xref="Phytozome:POPTR_0003s20310.1" /translation="MDGYEATRIVFSRIQNLEPENASKIMGLLLIQDHGEKEMIRLAF GPEALVHSVVLKAKKELGLPTNSPTTPSTPSSPSPFLANNPNPVTVSRQSSSASRFLG NGAGVNLPPSLAIPTNPSTSSGSSSWSALSDLPNHDELISPSSGLNPSSLPFYGNGGA TDMIDEFQLQDQLSFLNEGSPNLNPKNHDLFYSQAADLSSSSAAAACGSTDAMGFPSY WGSSFHRKSSSVSDILGADDPASGFGWRPCLYFARGYCKNGNNCRFIHGALGESGSMV AGADGAAMVGSPNKVEMMDQCHELLRSKSAQQQRLAAVSQLMGSASFPYSPKCMNLFL QQQQNDTQRKQQQPQVERGEFSPCGTPTGLDSRDPFDHQLGARMIYNSQDMLWRRKLE EQADLQQALELQNRRLMGLQLLDVKKHHHHRALSCGSPIPSPTHSPNLFSQSLVLPQF HNGQEAPQENCSSPAPAISVTAPEKQAASTANAAGKESASTEENGSGKESPHCEDGDL QESLEHNLPDSPFASPTKASGKYLSAFSDADVDKDASVSASSVNNNWVSSALLPANNA LDMASFNSYNCQLPRYIIVTKKAPLVDSIILSLRL" CDS join(182462..183489,183606..183785,183882..184067, 184155..184249,184338..184603,184705..184861, 185065..185234) /locus_tag="TCM_042362" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040778t1" /codon_start=1 /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 2" /protein_id="EOY17555.1" /db_xref="Phytozome:POPTR_0003s20310.3" /db_xref="TAIR:AT3G51950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HHY7" /translation="MDGYEATRIVFSRIQNLEPENASKIMGLLLIQDHGEKEMIRLAF GPEALVHSVVLKAKKELGLPTNSPTTPSTPSSPSPFLANNPNPVTVSRQSSSASRFLG NGAGVNLPPSLAIPTNPSTSSGSSSWSALSDLPNHDELISPSSGLNPSSLPFYGNGGA TDMIDEFQLQDQLSFLNEGSPNLNPKNHDLFYSQAADLSSSSAAAACGSTDAMGFPSY WGSSFHRKSSSVSDILGADDPASGFGWRPCLYFARGYCKNGNNCRFIHGALGESGSMV AGADGAAMVGSPNKVEMMDQCHELLRSKSAQQQRLAAVSQLMGSASFPYSPKCMNLFL QQQQNDTQRAAAALMMGDDMNKFNRSRLERNGFSINGEAGMINPASRQIYLTFPADST FREEDVSTYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL VKPYKEKGKVPDKYRKQQQPQVERGEFSPCGTPTGLDSRDPFDHQLGARMIYNSQDML WRRKLEEQADLQQALELQNRRLMGLQLLDVKKHHHHRALSCGSPIPSPTHSPNLFSQS LVLPQFHNGQEAPQGTPFHRIVQALRPLYLSLLPRNKQPVLLMLLVKNQPVLKRMVVA RRALIVKMVICKKVWSTTFLIVLLHLLQKPLESTCQLSPMLMWIRMLQSRLLLLTIIG FLQPYFLQIMP" CDS join(182462..183489,183606..183785,183882..184067, 184155..184249,184338..184589,185065..185234) /locus_tag="TCM_042362" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG040778t1" /codon_start=1 /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 3" /protein_id="EOY17556.1" /db_xref="Phytozome:POPTR_0003s20310.3" /db_xref="TAIR:AT3G51950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HHY7" /translation="MDGYEATRIVFSRIQNLEPENASKIMGLLLIQDHGEKEMIRLAF GPEALVHSVVLKAKKELGLPTNSPTTPSTPSSPSPFLANNPNPVTVSRQSSSASRFLG NGAGVNLPPSLAIPTNPSTSSGSSSWSALSDLPNHDELISPSSGLNPSSLPFYGNGGA TDMIDEFQLQDQLSFLNEGSPNLNPKNHDLFYSQAADLSSSSAAAACGSTDAMGFPSY WGSSFHRKSSSVSDILGADDPASGFGWRPCLYFARGYCKNGNNCRFIHGALGESGSMV AGADGAAMVGSPNKVEMMDQCHELLRSKSAQQQRLAAVSQLMGSASFPYSPKCMNLFL QQQQNDTQRAAAALMMGDDMNKFNRSRLERNGFSINGEAGMINPASRQIYLTFPADST FREEDVSTYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL VKPYKEKGKVPDKYRKQQQPQVERGEFSPCGTPTGLDSRDPFDHQLGARMIYNSQDML WRRKLEEQADLQQALELQNRRLMGLQLLDVKKHHHHRALSCGSPIPSPTHSPNLFSQS LVLPQFHNGQEAPQVWSTTFLIVLLHLLQKPLESTCQLSPMLMWIRMLQSRLLLLTII GFLQPYFLQIMP" CDS join(182462..183489,183606..183785,183882..184061, 184155..184249,184338..184603,184705..184861, 185065..185234) /locus_tag="TCM_042362" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG040778t1" /codon_start=1 /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 4" /protein_id="EOY17557.1" /db_xref="Phytozome:POPTR_0003s20310.3" /db_xref="TAIR:AT3G51950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HHY7" /translation="MDGYEATRIVFSRIQNLEPENASKIMGLLLIQDHGEKEMIRLAF GPEALVHSVVLKAKKELGLPTNSPTTPSTPSSPSPFLANNPNPVTVSRQSSSASRFLG NGAGVNLPPSLAIPTNPSTSSGSSSWSALSDLPNHDELISPSSGLNPSSLPFYGNGGA TDMIDEFQLQDQLSFLNEGSPNLNPKNHDLFYSQAADLSSSSAAAACGSTDAMGFPSY WGSSFHRKSSSVSDILGADDPASGFGWRPCLYFARGYCKNGNNCRFIHGALGESGSMV AGADGAAMVGSPNKVEMMDQCHELLRSKSAQQQRLAAVSQLMGSASFPYSPKCMNLFL QQQQNDTQRAAAALMMGDDMNKFNRSRLERNGFSINGEAGMINPASRQIYLTFPADST FREEDVSTYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL VKPYKEKGKVPDKKQQQPQVERGEFSPCGTPTGLDSRDPFDHQLGARMIYNSQDMLWR RKLEEQADLQQALELQNRRLMGLQLLDVKKHHHHRALSCGSPIPSPTHSPNLFSQSLV LPQFHNGQEAPQGTPFHRIVQALRPLYLSLLPRNKQPVLLMLLVKNQPVLKRMVVARR ALIVKMVICKKVWSTTFLIVLLHLLQKPLESTCQLSPMLMWIRMLQSRLLLLTIIGFL QPYFLQIMP" CDS join(182462..183489,183606..183785,183882..184067, 184155..184249,184338..184774) /locus_tag="TCM_042362" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG040778t1" /codon_start=1 /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 6" /protein_id="EOY17559.1" /db_xref="Phytozome:POPTR_0003s20310.3" /db_xref="TAIR:AT3G51950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HHY7" /translation="MDGYEATRIVFSRIQNLEPENASKIMGLLLIQDHGEKEMIRLAF GPEALVHSVVLKAKKELGLPTNSPTTPSTPSSPSPFLANNPNPVTVSRQSSSASRFLG NGAGVNLPPSLAIPTNPSTSSGSSSWSALSDLPNHDELISPSSGLNPSSLPFYGNGGA TDMIDEFQLQDQLSFLNEGSPNLNPKNHDLFYSQAADLSSSSAAAACGSTDAMGFPSY WGSSFHRKSSSVSDILGADDPASGFGWRPCLYFARGYCKNGNNCRFIHGALGESGSMV AGADGAAMVGSPNKVEMMDQCHELLRSKSAQQQRLAAVSQLMGSASFPYSPKCMNLFL QQQQNDTQRAAAALMMGDDMNKFNRSRLERNGFSINGEAGMINPASRQIYLTFPADST FREEDVSTYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL VKPYKEKGKVPDKYRKQQQPQVERGEFSPCGTPTGLDSRDPFDHQLGARMIYNSQDML WRRKLEEQADLQQALELQNRRLMGLQLLDVKKHHHHRALSCGSPIPSPTHSPNLFSQS LVLPQFHNGQEAPQGTPFHSNIRINPPVILCLVHMNQHLILLKGNDLQSSHCRELFKP CARYICHCSRETSSQYC" CDS join(182462..183489,183606..183785,184339..184774) /locus_tag="TCM_042362" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Zinc finger family protein / RNA recognition motif-containing protein isoform 7" /protein_id="EOY17560.1" /db_xref="Phytozome:POPTR_0003s20310.3" /translation="MDGYEATRIVFSRIQNLEPENASKIMGLLLIQDHGEKEMIRLAF GPEALVHSVVLKAKKELGLPTNSPTTPSTPSSPSPFLANNPNPVTVSRQSSSASRFLG NGAGVNLPPSLAIPTNPSTSSGSSSWSALSDLPNHDELISPSSGLNPSSLPFYGNGGA TDMIDEFQLQDQLSFLNEGSPNLNPKNHDLFYSQAADLSSSSAAAACGSTDAMGFPSY WGSSFHRKSSSVSDILGADDPASGFGWRPCLYFARGYCKNGNNCRFIHGALGESGSMV AGADGAAMVGSPNKVEMMDQCHELLRSKSAQQQRLAAVSQLMGSASFPYSPKCMNLFL QQQQNDTQRAAAALMMGDDMNKFNRSRLERNGFSINGEAGMINPASRQIYLTFPADST FREEDVSTYFRARMIYNSQDMLWRRKLEEQADLQQALELQNRRLMGLQLLDVKKHHHH RALSCGSPIPSPTHSPNLFSQSLVLPQFHNGQEAPQGTPFHSNIRINPPVILCLVHMN QHLILLKGNDLQSSHCRELFKPCARYICHCSRETSSQYC" gene 186330..195298 /locus_tag="TCM_042363" /note="dbxref CacaoGD:Thecc1EG042363" mRNA join(186330..186746,188264..188445,191473..191527, 191621..193563,193844..194002,194114..194285, 194410..194708,194882..195298) /locus_tag="TCM_042363" /product="Autoinhibited Ca2+-ATPase 11" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022498" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024602t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s05790.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc266t4" CDS join(188272..188445,191473..191527,191621..193563, 193844..194002,194114..194285,194410..194708, 194882..195196) /locus_tag="TCM_042363" /note="paralog of Thecc1EG024602t1" /codon_start=1 /product="Autoinhibited Ca2+-ATPase 11" /protein_id="EOY17561.1" /db_xref="Phytozome:POPTR_0001s05790.1" /db_xref="TAIR:AT3G57330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22218" /translation="MEDYLRKNFAVEHKRPSEEALRRWRRAVSVVKNPRRRFRMVADL AKRAEADRKRINLQEKLRVALYVQKAALHFIDAGKRVQYKLPEDVRQAGFGIGADELA FVVHSHDIKSFEDHGGVEGLAKKVSVSLTDGVVPTNIPLRQKIYGYNQFAEKPARSFW MFVWEALHDLTLIILMVCAAVSIGVGIATEGWPAGMYDGIGIVLCIFLVVLVTAISDY KQSLQFNDLDKEKKNIVVQVTRDGCRQKISIYDLVVGDIVHLSIGDQVPADGVLISGF SLSIDESSLSGESEPVNVTQQRPFLLAGAKVQDGSAKMLVTTVGMRTEWGRIMVTLSE GGEDETPLQVKLNGVATVIGKFGLGFAVLTFLVLTIRFVVTKALHGEITDWSVSDALI LMNFFATAVTIIVVAVPEGLPLAVTLSLAFAMKKLMSNKALVRHLSACETMGSATTIC TDKTGTLTTNHMAVNKIWTCGRTIKIEGNQSEEVLQSSITGEVFNILLQSIFQNTGAE VVKGKDGKNNILGSPTETAILEFGLLLGGAFKIHRKESEILKVEPFNSEKKKMSVLVS LSNGGGHRAFCKGASEIILKSCNKIINADGKAEPLSGEQKKCITDVINGFACEALRTL CLAFKDVKDTSKVDSIPEDSYTLIAVVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDN INTAKAIARECGILTDDGLAIEGPDFRDMSPQQMEETLPKLQVMARSSPLDKHKLVTY LRKEFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIQNV TRWGRAVYINIQKFVQFQLTVNIVALMLNFISACVSGSAPLTAVQLLWVNMIMDTLGA LALATEPPHEGLMKRPPIGRDVAFITRIMWRNIIGQSIYQLIVLAILKFDGKRLLQLS GSDATATLNTVIFNTFVFCQVFNEINSRDMEKVNVIRGIFDSWLFIMVVVSTVASQSI IVELLGTFANTVPLSWDLWLVSILLGAGSLIVAVILKCIPVEKGKEAATTTNHDGYEP LPNGPDMA" gene complement(195615..197223) /locus_tag="TCM_042364" /note="dbxref CacaoGD:Thecc1EG042364" mRNA complement(join(195615..195915,196638..196940, 197046..197223)) /locus_tag="TCM_042364" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g16040.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013332t1" /inference="similar to AA sequence:Phytozome:GSVIVT01001464001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3750t1" CDS complement(join(195828..195915,196638..196940, 197046..197173)) /locus_tag="TCM_042364" /note="paralog of Thecc1EG013332t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17562.1" /db_xref="Phytozome:GSVIVT01001464001" /db_xref="TAIR:AT5G13470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7M5T5" /translation="MSLVDYASSSDDDVSDSEREPPQQRHEPPPPPLPRAPSPPKTQA SGSSADQKPDTFESLPDASMLLNSPTVSLVSGNDHASVVAAAMAESASRKRDSKGMMG LGSGGGAAAAPRAKLPRATLPHSKSVPDTEGGLLVPPQLKGRSNVVTEDISKLFVSRQ AVAQPRGPENQS" gene complement(197453..200769) /locus_tag="TCM_042365" /note="dbxref CacaoGD:Thecc1EG042365" mRNA complement(join(197453..197872,198088..198227, 198379..198626,199034..199255,199340..200769)) /locus_tag="TCM_042365" /product="6-phosphogluconate dehydrogenase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024615t1" /inference="similar to AA sequence:ricco:30131.m007256" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg115t1; alternateUTRof:Thecc1EG042365t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg115t1" mRNA complement(join(197475..197872,198088..198227, 198379..198626,199034..199255,199340..200526)) /locus_tag="TCM_042365" /product="6-phosphogluconate dehydrogenase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024615t1" /inference="similar to AA sequence:ricco:30131.m007256" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg115t1" CDS complement(join(197746..197872,198088..198227, 198379..198626,199034..199255,199340..200000)) /locus_tag="TCM_042365" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m007256; paralog of Thecc1EG024615t1" /codon_start=1 /product="6-phosphogluconate dehydrogenase family protein isoform 1" /protein_id="EOY17563.1" /db_xref="TAIR:AT2G41540.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JFL8" /translation="MVGTTEATGQNVHANGLIHNSNGSLEEKLDELRHLMGKAEGDPL RIVGVGAGAWGSVFTALLQDSYGHLRDKVLIRIWRRPGRAVDRATAEHLFEVINSRED VLRRLIRRCAYLKYVEARLGDRTLYADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD ADVVINGLPSTETHQVFEEIRRYWKERITVPVIISLAKGVEAELGPQPRIITPTQMIN RATGIPIENILYLGGPNIASEIYNKEYANARICGAEKWRKALAKFLRQPHFIVWDNGD LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLA GPLLADTYVTLLKGRNAWYGQQLAKGVLSLEMGDSIKGKGMIQGVSAVKAFYELLSQF SLSVLHPEENKHVAPVELCPILRMLYKILITREFPLQAILEALRDETMYDPKDRIEIA QTHVFYRPSLLGQQP" CDS complement(join(197746..197872,198088..198227, 198379..198626,199034..199255,199340..200000)) /locus_tag="TCM_042365" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m007256; paralog of Thecc1EG024615t1" /codon_start=1 /product="6-phosphogluconate dehydrogenase family protein isoform 1" /protein_id="EOY17564.1" /db_xref="TAIR:AT2G41540.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JFL8" /translation="MVGTTEATGQNVHANGLIHNSNGSLEEKLDELRHLMGKAEGDPL RIVGVGAGAWGSVFTALLQDSYGHLRDKVLIRIWRRPGRAVDRATAEHLFEVINSRED VLRRLIRRCAYLKYVEARLGDRTLYADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD ADVVINGLPSTETHQVFEEIRRYWKERITVPVIISLAKGVEAELGPQPRIITPTQMIN RATGIPIENILYLGGPNIASEIYNKEYANARICGAEKWRKALAKFLRQPHFIVWDNGD LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLA GPLLADTYVTLLKGRNAWYGQQLAKGVLSLEMGDSIKGKGMIQGVSAVKAFYELLSQF SLSVLHPEENKHVAPVELCPILRMLYKILITREFPLQAILEALRDETMYDPKDRIEIA QTHVFYRPSLLGQQP" gene 203784..206027 /locus_tag="TCM_042366" /note="dbxref CacaoGD:Thecc1EG042366" mRNA join(203784..203899,204066..204864,205015..205434, 205532..206027) /locus_tag="TCM_042366" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06900.1" /inference="similar to AA sequence:ricco:28567.m000052" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7964t1_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7964t1_C2" mRNA join(203785..203964,204066..204864,205015..205434, 205532..206027) /locus_tag="TCM_042366" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06900.1" /inference="similar to AA sequence:ricco:28567.m000052" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc342t2_C2; alternateUTRof:Thecc1EG042366t1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7964t1_C2" CDS join(204100..204864,205015..205434,205532..205639) /locus_tag="TCM_042366" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28567.m000052" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY17565.1" /db_xref="TAIR:AT2G31210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIJ6" /translation="MKVYEDSGCFDPNSMTDCQALMGGLAGGISTNSQNSLEDNLNLS SYNNHQHEDASAAAAAVEMEIQQHYMLDNNTTNNNNTTLLIPQLTQELSYDQSNWDAD QQSFNMVPSSSSPEAAYPATPDLLNLFHLPRCSFLPNSSISFESAPASSVVYDPLFHL NLPPQPPVFRELLQSLPHGYTLPADDREASGGGGLYHDGDNGILEFNRGISMAGHGKG RNRAGKTTKHFATERERRVHLNDKYKALRNMVPNPSKTDRASIVGDAINYIKELVRTV NELKLLVEKKRCGQGRSKRLKTEDAGSAADAGDVECKPLGDPDQCYNSSLRSSWLQRK SKDTEVDVRIIDDEVTIKLVQRKKINCLLFVSRLLDELQLDLHHVAGGHVGDYYSFLF NTKIYEGSSVYASAIANKLIEGVDRQYAAAPPTSSTCL" CDS join(204100..204864,205015..205434,205532..205639) /locus_tag="TCM_042366" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28567.m000052" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY17566.1" /db_xref="TAIR:AT2G31210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIJ6" /translation="MKVYEDSGCFDPNSMTDCQALMGGLAGGISTNSQNSLEDNLNLS SYNNHQHEDASAAAAAVEMEIQQHYMLDNNTTNNNNTTLLIPQLTQELSYDQSNWDAD QQSFNMVPSSSSPEAAYPATPDLLNLFHLPRCSFLPNSSISFESAPASSVVYDPLFHL NLPPQPPVFRELLQSLPHGYTLPADDREASGGGGLYHDGDNGILEFNRGISMAGHGKG RNRAGKTTKHFATERERRVHLNDKYKALRNMVPNPSKTDRASIVGDAINYIKELVRTV NELKLLVEKKRCGQGRSKRLKTEDAGSAADAGDVECKPLGDPDQCYNSSLRSSWLQRK SKDTEVDVRIIDDEVTIKLVQRKKINCLLFVSRLLDELQLDLHHVAGGHVGDYYSFLF NTKIYEGSSVYASAIANKLIEGVDRQYAAAPPTSSTCL" gene complement(210014..213483) /locus_tag="TCM_042367" /note="dbxref CacaoGD:Thecc1EG042367" mRNA complement(join(210014..211135,211223..211485, 211567..211827,211925..212052,212372..213483)) /locus_tag="TCM_042367" /product="Cytokinin oxidase/dehydrogenase 6 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007255" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024521t2" /inference="similar to AA sequence:ricco:30131.m007255" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg87t3" mRNA complement(join(210452..211135,211223..211485, 211567..211827,211925..212055,212372..213017)) /locus_tag="TCM_042367" /product="Cytokinin oxidase/dehydrogenase 6 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30131.m007255" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024521t2" /inference="similar to AA sequence:ricco:30131.m007255" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg87t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg87t3" CDS complement(join(210814..211135,211223..211485, 211567..211827,211925..212052,212372..212990)) /locus_tag="TCM_042367" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m007255; paralog of Thecc1EG024521t2" /codon_start=1 /product="Cytokinin oxidase/dehydrogenase 6 isoform 1" /protein_id="EOY17567.1" /db_xref="TAIR:AT3G63440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LY71" /translation="MSYTLVSFPRKTNMLFLRSFMILFLSCITIKINLCFPSIPSSLK TLSIDGHFKFEEVDHAAKDFGNRYRFLPLAVLHPKSVSGIATTVKHIWQMGPRSELTV AARGHGHSLQGQAQAHRGVVINMESLQGPKMQVHAGKFPYVDVSGGELWINILRESLR HGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVHQLEVVTGKGEVVNCSEKQ NSDLFYSVLGGLGQFGIITRARISLEPAPEMVKWIRVLYTDFATFARDQEKLISGEST FDYIEGFVIINRTGLLNNWRSSFNPQDPVQASQFKSDGRTLFCLELAKYFNPEEMAVV NQEIKNSLSQLNHIPSTLFMSEVPYIEFLDRVHISEIKLRSKGLWEVPHPWLNLLVPR SKVHSFAQEVFGNILTDTSNGPILIYPVNKSKWDNRTSAVIPEEDVFYLVAFLSSAVP SSTGTDGLDHILIQNKRILEFCEIARLGVKQYLPHYSTQGEWQAHYGPQWELFVQRKS TYDPLALLAPGQRIFQKPIAYS" CDS complement(join(210814..211135,211223..211485, 211567..211827,211925..212055,212372..212990)) /locus_tag="TCM_042367" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m007255; paralog of Thecc1EG024521t2" /codon_start=1 /product="Cytokinin oxidase/dehydrogenase 6 isoform 2" /protein_id="EOY17568.1" /db_xref="TAIR:AT3G63440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LY71" /translation="MSYTLVSFPRKTNMLFLRSFMILFLSCITIKINLCFPSIPSSLK TLSIDGHFKFEEVDHAAKDFGNRYRFLPLAVLHPKSVSGIATTVKHIWQMGPRSELTV AARGHGHSLQGQAQAHRGVVINMESLQGPKMQVHAGKFPYVDVSGGELWINILRESLR HGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVHQLEVVTAGKGEVVNCSEK QNSDLFYSVLGGLGQFGIITRARISLEPAPEMVKWIRVLYTDFATFARDQEKLISGES TFDYIEGFVIINRTGLLNNWRSSFNPQDPVQASQFKSDGRTLFCLELAKYFNPEEMAV VNQEIKNSLSQLNHIPSTLFMSEVPYIEFLDRVHISEIKLRSKGLWEVPHPWLNLLVP RSKVHSFAQEVFGNILTDTSNGPILIYPVNKSKWDNRTSAVIPEEDVFYLVAFLSSAV PSSTGTDGLDHILIQNKRILEFCEIARLGVKQYLPHYSTQGEWQAHYGPQWELFVQRK STYDPLALLAPGQRIFQKPIAYS" gene complement(220434..223414) /locus_tag="TCM_042368" /note="dbxref CacaoGD:Thecc1EG042368" mRNA complement(join(220434..221468,221555..221686, 221769..221987,222276..222641,222715..222802, 223086..223414)) /locus_tag="TCM_042368" /product="Iq-domain 14, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g01410.1" /inference="similar to AA sequence:ricco:30131.m007254" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b040875t1a2; alternateUTRof:Thecc1EG042368t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc687t1" mRNA complement(join(220434..221468,221555..221686, 221769..221987,222276..222641,222715..222796, 223086..223408)) /locus_tag="TCM_042368" /product="Iq-domain 14, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g01410.1" /inference="similar to AA sequence:ricco:30131.m007254" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc687t1" mRNA complement(join(220692..221465,221769..221987, 222276..222641,222715..222802,223086..223414)) /locus_tag="TCM_042368" /product="Iq-domain 14, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g01410.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s05840.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc677t3; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc687t1" mRNA complement(join(220716..221468,222276..222641, 222715..222796,223086..223414)) /locus_tag="TCM_042368" /product="Iq-domain 14, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g01410.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc701t2; alternateUTRof:Thecc1EG042368t4; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc687t1" mRNA complement(join(220716..221468,222276..222641, 222715..222802,223086..223414)) /locus_tag="TCM_042368" /product="Iq-domain 14, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g01410.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc701t6; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc687t1" CDS complement(join(220857..221468,222276..222641, 222715..222789)) /locus_tag="TCM_042368" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Iq-domain 14, putative isoform 4" /protein_id="EOY17572.1" /db_xref="TAIR:AT5G13460.1" /translation="MAKKKSWFNLVKRFFLFETLSTTEKKEKRRKWMFGRFRTKRLAS LAAASPPRDKTKIETDEDQEKHALTVAIATAAAAEAAVAAAQVAAEVVRLTGTPQSNH KCEGEAEEYIVNFQPGSSPSADQHERKKIQELAAIKIQATFRGYLKSTESEQNKGNGG LKYWLDQWVDTQVSKSKELEDLDSVWNSNPKPAEENRAKQLRLKTFPRQYHMEGLDSP LLVPRRSFHRKQCSLGEDNSFSTSPVVPTYMAATQSAKAKVRSMSSPKLRPGSFDTQS ESYSPYKNKLSLISSITRDVPNSCRISSRPSAYQQRSPSLKGVPGPVKSKRTLKDLSF NSECSLPNWVRESTFR" CDS complement(join(220857..221468,222276..222641, 222715..222789)) /locus_tag="TCM_042368" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Iq-domain 14, putative isoform 4" /protein_id="EOY17573.1" /db_xref="TAIR:AT5G13460.1" /translation="MAKKKSWFNLVKRFFLFETLSTTEKKEKRRKWMFGRFRTKRLAS LAAASPPRDKTKIETDEDQEKHALTVAIATAAAAEAAVAAAQVAAEVVRLTGTPQSNH KCEGEAEEYIVNFQPGSSPSADQHERKKIQELAAIKIQATFRGYLKSTESEQNKGNGG LKYWLDQWVDTQVSKSKELEDLDSVWNSNPKPAEENRAKQLRLKTFPRQYHMEGLDSP LLVPRRSFHRKQCSLGEDNSFSTSPVVPTYMAATQSAKAKVRSMSSPKLRPGSFDTQS ESYSPYKNKLSLISSITRDVPNSCRISSRPSAYQQRSPSLKGVPGPVKSKRTLKDLSF NSECSLPNWVRESTFR" CDS complement(join(220857..221465,221769..221987, 222276..222641,222715..222789)) /locus_tag="TCM_042368" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Iq-domain 14, putative isoform 3" /protein_id="EOY17571.1" /db_xref="Phytozome:POPTR_0001s05840.1" /db_xref="TAIR:AT5G13460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGG5" /translation="MAKKKSWFNLVKRFFLFETLSTTEKKEKRRKWMFGRFRTKRLAS LAAASPPRDKTKIETDEDQEKHALTVAIATAAAAEAAVAAAQVAAEVVRLTGTPQSNH KCEGEAEEYIVNFQPGSSPSADQHERKKIQELAAIKIQATFRGYLARKALRALKGIVM LQAIIRGWAVRRQAMNTLKCLQSIVSIQSQVCARRFEMAEGIWQSDEDKQLLTLKDKI IKSTESEQNKGNGGLKYWLDQWVDTQVSKSKELEDLDSVWNSNPKPAEENRAKQLRLK TFPRQYHMEGLDSPLLVPRRSFHRKQCSLGEDNSFSTSPVVPTYMAATQSAKAKVRSM SSPKLRPGSFDTQSESYSPYKNKLSLISSITRDVPNSCRISSRPSAYQQRSPSLKGVP GPVKSKRTLKDLSFNSECSLPNWVRESTFR" CDS complement(join(220857..221468,221555..221686, 221769..221987,222276..222641,222715..222789)) /locus_tag="TCM_042368" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m007254" /codon_start=1 /product="Iq-domain 14, putative isoform 1" /protein_id="EOY17569.1" /db_xref="TAIR:AT5G13460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGG5" /translation="MAKKKSWFNLVKRFFLFETLSTTEKKEKRRKWMFGRFRTKRLAS LAAASPPRDKTKIETDEDQEKHALTVAIATAAAAEAAVAAAQVAAEVVRLTGTPQSNH KCEGEAEEYIVNFQPGSSPSADQHERKKIQELAAIKIQATFRGYLARKALRALKGIVM LQAIIRGWAVRRQAMNTLKCLQSIVSIQSQVCARRFEMAEGIWQSDEDKQLLTLKDKI IKVDTNSHKRWDDSILTKEEADAMVLSKKEAAIKRERIKEYSYVHRKSTESEQNKGNG GLKYWLDQWVDTQVSKSKELEDLDSVWNSNPKPAEENRAKQLRLKTFPRQYHMEGLDS PLLVPRRSFHRKQCSLGEDNSFSTSPVVPTYMAATQSAKAKVRSMSSPKLRPGSFDTQ SESYSPYKNKLSLISSITRDVPNSCRISSRPSAYQQRSPSLKGVPGPVKSKRTLKDLS FNSECSLPNWVRESTFR" CDS complement(join(220857..221468,221555..221686, 221769..221987,222276..222641,222715..222789)) /locus_tag="TCM_042368" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m007254" /codon_start=1 /product="Iq-domain 14, putative isoform 1" /protein_id="EOY17570.1" /db_xref="TAIR:AT5G13460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGG5" /translation="MAKKKSWFNLVKRFFLFETLSTTEKKEKRRKWMFGRFRTKRLAS LAAASPPRDKTKIETDEDQEKHALTVAIATAAAAEAAVAAAQVAAEVVRLTGTPQSNH KCEGEAEEYIVNFQPGSSPSADQHERKKIQELAAIKIQATFRGYLARKALRALKGIVM LQAIIRGWAVRRQAMNTLKCLQSIVSIQSQVCARRFEMAEGIWQSDEDKQLLTLKDKI IKVDTNSHKRWDDSILTKEEADAMVLSKKEAAIKRERIKEYSYVHRKSTESEQNKGNG GLKYWLDQWVDTQVSKSKELEDLDSVWNSNPKPAEENRAKQLRLKTFPRQYHMEGLDS PLLVPRRSFHRKQCSLGEDNSFSTSPVVPTYMAATQSAKAKVRSMSSPKLRPGSFDTQ SESYSPYKNKLSLISSITRDVPNSCRISSRPSAYQQRSPSLKGVPGPVKSKRTLKDLS FNSECSLPNWVRESTFR" mobile_element 221075..221122 /note="source:INTACT731_F12_scaffold_5-int 2528 2581" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 225863..231104 /locus_tag="TCM_042369" /note="dbxref CacaoGD:Thecc1EG042369" mRNA join(225863..226745,226848..227144,227743..227934, 228121..228202,228304..228495,228623..228736, 229134..229224,229297..229454,229688..230119, 230212..231104) /locus_tag="TCM_042369" /product="Pentatricopeptide repeat-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46420.1" /inference="similar to AA sequence:frave:gene20128" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04241t00001" mRNA join(226017..226745,226848..227144,227743..227934, 228121..228202,228304..228495,228623..228736, 229134..229224,229297..229454,229685..230120, 230212..230920) /locus_tag="TCM_042369" /product="Pentatricopeptide repeat-containing protein isoform 2" /inference="similar to AA sequence:frave:gene20128" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg117t1" CDS join(226162..226745,226848..227144,227743..227934, 228121..228202,228304..228495,228623..228736, 229134..229224,229297..229454,229688..230119, 230212..230607) /locus_tag="TCM_042369" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene20128" /codon_start=1 /product="Pentatricopeptide repeat-containing protein isoform 1" /protein_id="EOY17574.1" /db_xref="TAIR:AT1G30610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T6B9" /translation="MTMWSAQMGVFSFEKNGICTSVSSQKPFPPSGFLNCWRPTCGVA SKNSSKKKWSFALRVVDSGGGILEKELDFKPSFDEYLKTMESVREKKQSLKSNRGNSI EKSNRGKSKDDSRRKFGEEEKVSKVVEHNEVKMKSKEATRTRSRKALLVKGEDDDLKA ETDEYKNFEGSNDVVDKPQVSRIKMEGRITKLANLGKYDSKSKSDEGDVRLMKFGEFS EEVKMSKIVKWNGVNTMNEGARRTRSRKAFLEEDEDDDLRMERSAFKNFEESNDVFDK PRASKMEMEERVQRLAKSLNGADIDMPEWMFSKMMRSAKIKFTDYCILRVIQALGKLG NWRRVLQVIEWLQMRERFKSYRLRHIYTTALDVLGKARRPVEALNIFHSMQQQMASYP DIVAYHSIAVTLGQAGHMRELFHVIDSMRSPPKKKFKTRIIGKWDPRLEPDIVVYNAV LNACAQRKQWEGAFWVLQQLKQQHLQLSATTYGLVMEVMFACGKYNLVHEFFRKIEKS SMPNALTYRVLVNTLWKEGKIDDAVLAVQGMEKRGIVGSAALYYDLARCLCSSGRCQE ALMQIEKICKVASKPLVVTYTGLIQACLDSGNIQNGAYIFNEMQNFCSPNLVTCNIML KAYLDHRLFDQAKDLFQKMLEDANQISSKSDYLHRVIPDSYTFNIMLDACVQQKRWDE FERVYRKMLHHEFHFNAKRHLHMILDAARAGKGELIETTWEHMARADRTPPLPLIKER FCMKLEKNDYISALSCITIHPLRELQAFSKSAWSNFFKDNASRFRKDIIVGLVDEVEN ILGRSDSPNPILHNLLTSSKEFLRTHWTSADANLTQTVCTVESTKPF" CDS join(226162..226745,226848..227144,227743..227934, 228121..228202,228304..228495,228623..228736, 229134..229224,229297..229454,229685..230120, 230212..230225) /locus_tag="TCM_042369" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene20128" /codon_start=1 /product="Pentatricopeptide repeat-containing protein isoform 2" /protein_id="EOY17575.1" /db_xref="TAIR:AT1G30610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T6B9" /translation="MTMWSAQMGVFSFEKNGICTSVSSQKPFPPSGFLNCWRPTCGVA SKNSSKKKWSFALRVVDSGGGILEKELDFKPSFDEYLKTMESVREKKQSLKSNRGNSI EKSNRGKSKDDSRRKFGEEEKVSKVVEHNEVKMKSKEATRTRSRKALLVKGEDDDLKA ETDEYKNFEGSNDVVDKPQVSRIKMEGRITKLANLGKYDSKSKSDEGDVRLMKFGEFS EEVKMSKIVKWNGVNTMNEGARRTRSRKAFLEEDEDDDLRMERSAFKNFEESNDVFDK PRASKMEMEERVQRLAKSLNGADIDMPEWMFSKMMRSAKIKFTDYCILRVIQALGKLG NWRRVLQVIEWLQMRERFKSYRLRHIYTTALDVLGKARRPVEALNIFHSMQQQMASYP DIVAYHSIAVTLGQAGHMRELFHVIDSMRSPPKKKFKTRIIGKWDPRLEPDIVVYNAV LNACAQRKQWEGAFWVLQQLKQQHLQLSATTYGLVMEVMFACGKYNLVHEFFRKIEKS SMPNALTYRVLVNTLWKEGKIDDAVLAVQGMEKRGIVGSAALYYDLARCLCSSGRCQE ALMQQIEKICKVASKPLVVTYTGLIQACLDSGNIQNGAYIFNEMQNFCSPNLVTCNIM LKAYLDHRLFDQAKDLFQKMLEDANQISSKSDYLHRVIPDSYTFNIMLDACVQQKRWD EFERVYRKMLHHEFHFNAKRHLHMILDAARAGKGGTN" gene 231268..237230 /locus_tag="TCM_042370" /note="dbxref CacaoGD:Thecc1EG042370" mRNA join(231268..231844,232492..233915,237135..237230) /locus_tag="TCM_042370" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30131.m007253" /inference="similar to AA sequence:Phytozome:POPTR_0001s05850.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg93t1" CDS join(231496..231844,232492..233528) /locus_tag="TCM_042370" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17576.1" /db_xref="Phytozome:POPTR_0001s05850.1" /db_xref="TAIR:AT3G51940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NAY8" /translation="MLAIASDKTAKALCSFTQVCVRYFSSLLQRISVPISDKRQASFF ETTHPSNLSSASCFLCSFIKSFVFFLFGLESCILSDQGAMGNWRYRPHRRFYRQDRAP KYPPSYHEPEPSVSEFWNDGVPLWEKKFCTLVGLVSWRKIVDAKKFMCYNDNVLNWDD SAGEEAFQNAKKRYWAEINGLACDIPTPDPDVFIDQINWNPNIDPELIMDLEQEYFAA KDKDGKVVHENKTAMNLSSAPSEGCNANPYKVENPWECNNDIQGNSGLKDLVGWGQPV SKVDGSRNLISNGNDPWDNGITQGNESGKHNSWGDYGSRDWNTGNNSWGHSCQGIGSG KDDGWGDFKRNSCRRNQQYKRLPNGDNSWDRSFVQHNGAAKDQGWGDYGRNSWGWKQW ENKNIGSRKVDFRKTSSSGGAWHGGSRKRESSHQYISGYNSHRFQRDDNQTSHCWRNG KPTKRVSFALE" gene 233718..240841 /locus_tag="TCM_042371" /note="dbxref CacaoGD:Thecc1EG042371" mRNA join(233718..233915,237135..238640,238785..238895, 238995..239170,239266..239476,239562..239799, 239875..240025,240119..240841) /locus_tag="TCM_042371" /product="Cysteine-rich receptor-like protein kinase 10, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400016452" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028733t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s43260.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc527t7" mobile_element complement(233917..237130) /note="source:CACAO_M_E85297_F19_scaffold_10 1 3214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 237318..237396 /note="source:scaffold_9_CACTA_0946 14957 15049" /mobile_element_type="transposon:TIR/CACTA" CDS join(237491..238640,238785..238895,238995..239170, 239266..239476,239562..239799,239875..240025, 240119..240424) /locus_tag="TCM_042371" /note="paralog of Thecc1EG028733t1" /codon_start=1 /product="Cysteine-rich receptor-like protein kinase 10, putative" /protein_id="EOY17577.1" /db_xref="Phytozome:POPTR_0001s43260.1" /db_xref="TAIR:AT3G16030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GIE3" /translation="MFSFKVLLLILACLWISDAATDTLSLGDKLNSSDHLVSKSGNVT LGFYKQEYDATWGDKGFGYYLAVRYTEDTLNHPIWLANRDDPIADDSGVLIIDNTGLK ITHAGGNPFLLFSLQSTAATNIKLVLEDSGNLILQDEDSNGPENRILWESFDYPTDTF LPGMKLGVSRGRNRSLTSWLTQSIPAPGAFTLEWNPVAGGLVVRLKDRVLWTTGESFE NILPLDPLNMNYNFTNVSNVDEQYLYYTLLIGEYTPEDGRKNARLVLLDDGSLECESR LYLFNSGTCAGDITENGCVRWEGPKCRSNGDKYEKISIIPAHKNSINNTLLGNNSLSL NDCKDICWKDCGCLGVNEQMVLGCQFLSGPYIQGGLDATSYQIITRHRSKSKSWIWIL ISIAIALMITILLGILFYLRRRRRTRMEEEFLLDLMTSDRASDISELHTGNHGHNLNI YTAAFIMSATNCFSPENLLGKGGFGPVFKGTFPDGQEVAIKRLSRGSGQGLVEFKNEL ILIAKLQHTNLVRLLGFCVQGEEKMLVYEYMPNKSLDSFIFDESKRKLLDWNKRFSII EGIAQGLLYLHKYSRLRIIHRDLKASNILLDENMNPKISDFGMARIYKTNEAQSNTNR IVGTYGYMSPEYAMDGIFSVKSDVYSFGVMVLEVVSGRKNTSTFHFDRPLNLVGYAWE LWKHGAALELVDPTLSDSCSKPQVLRCITLGLLCVEDSPLDRPTMSDVISMLTGEMQL PLPKNPAFSTGRRIIETNVEEKEFENYSLNGLSMSVMDPR" gene 240888..244926 /locus_tag="TCM_042373" /note="dbxref CacaoGD:Thecc1EG042373" mRNA join(240888..241068,241786..242016,242153..242320, 242642..242860,243195..243281,243846..243951, 244045..244280,244496..244926) /locus_tag="TCM_042373" /product="Deoxyhypusine synthase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18570.1" /inference="similar to AA sequence:ricco:29716.m000307" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8104t7" mRNA join(240909..241068,241786..242020,242153..242320, 242642..242860,243195..243281,243846..243951, 244045..244280,244496..244715) /locus_tag="TCM_042373" /product="Deoxyhypusine synthase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18570.1" /inference="similar to AA sequence:ricco:29716.m000307" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc74t2; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8104t7" CDS join(241822..242016,242153..242320,242642..242860, 243195..243281,243846..243951,244045..244280, 244496..244585) /locus_tag="TCM_042373" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29716.m000307" /codon_start=1 /product="Deoxyhypusine synthase isoform 1" /protein_id="EOY17578.1" /db_xref="TAIR:AT5G05920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7Y1G4" /translation="MEDKLMNSVHSTVFKESDSLEGKCTKIEGYDFNQGVNYSQLLKS MLSTGFQASNLGEAMEIVNEMLDWRLADEAITEDCSEEEKDPAYRESVRCKVFLGFTS NLISSGLRDTVRYLTEHHMVDVIVTTTGGIEEDLIKCLAPTYKGDFYLPGAQLRSRGL NRIGNLLVPNDNYCKFEDWIIPIFDQMLKEQLEENVLWTPSKLIARLGREINNESSYL YWAYKNEIPVFCPGLTDGSLGDMLYFHSFHSPGLIIDVVQDIRAMNSEAVHASPRKTG MIILGGGLPKHHICNANMMRNGADYAVYINTAQEFDGSDSGARPDEAISWGKIRGSAR TVKVHCDATIAFPLLVAETFASRWKKSVNIKA" CDS join(242009..242020,242153..242320,242642..242860, 243195..243281,243846..243951,244045..244280, 244496..244585) /locus_tag="TCM_042373" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29716.m000307" /codon_start=1 /product="Deoxyhypusine synthase isoform 2" /protein_id="EOY17579.1" /db_xref="TAIR:AT5G05920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7Y1G4" /translation="MRWLLDWRLADEAITEDCSEEEKDPAYRESVRCKVFLGFTSNLI SSGLRDTVRYLTEHHMVDVIVTTTGGIEEDLIKCLAPTYKGDFYLPGAQLRSRGLNRI GNLLVPNDNYCKFEDWIIPIFDQMLKEQLEENVLWTPSKLIARLGREINNESSYLYWA YKNEIPVFCPGLTDGSLGDMLYFHSFHSPGLIIDVVQDIRAMNSEAVHASPRKTGMII LGGGLPKHHICNANMMRNGADYAVYINTAQEFDGSDSGARPDEAISWGKIRGSARTVK VHCDATIAFPLLVAETFASRWKKSVNIKA" gene 244978..247922 /locus_tag="TCM_042374" /note="dbxref CacaoGD:Thecc1EG042374" mRNA 244978..247922 /locus_tag="TCM_042374" /product="Pentatricopeptide repeat (PPR-like) superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30131.m007253" /inference="similar to AA sequence:Phytozome:POPTR_0003s20190.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg111t1" CDS 245359..247509 /locus_tag="TCM_042374" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein" /protein_id="EOY17580.1" /db_xref="Phytozome:POPTR_0003s20190.1" /db_xref="TAIR:AT4G20740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWJ6" /translation="MPPKSLPAKTPKPYFFYGHRKPSQNRPVVYGGLFSNRQILKTPP TPPQPSPPFDLRKWDPYYLSQNPSPPSTPNPYQNRKLSPIARFIVDAFRKNQYTWGPT VVFELNKLRRVTASLVAEVLKVENDPVLASKFFHWAGKQKGFKHNFASYNALAYCLNR NGRFRAADQLPELMDSQGKQPTEKQFEILIRMHADNNRGQRVYYVYQKMKNFGIKPRV FLYNRIMDALVKTGYLDLALSVYEDFRGDGLVEESITFMILIKGLCKAGRIEEMLEVL GRMREKLCKPDVFAYTAMVRILVSEKNLDGCLLVWEEMERDGVEPDVMAYVTLVTGLC KGGRVQRGYELFREMKDKGILIDRATYGVLIEGFVKDGKVGSACDLLKDLVDSGYRAD LGIYNSLIEGLCDARRVDRAYKLFQVTVQEGLEPEFATVNPMLVAFAEMRRMNDFCKL LEQMQKLGFSVIDDLSKFFSFVVGKEERTVLAIQVFDELKVKGYTGVPIYNILMEALR KTGKVKQALSLFQEMKGLNFEPDSSTYGTAIICFVEDENIKEACVCHNNIIEMSCVPS IDAYYSLAKGLCKIGEIDAAMMLVRDCLGNVTNGPMAFKYALTVLHACKSGGETVTEV LNEMMQEGWPPDNIIYSAIISGMCKYGTIEEARKVFANLRTRKLLTEANTIVYDEILI EHMEKKAAELVLSGLKFFGLESKLKAKGSTLLSR" gene complement(249230..253761) /locus_tag="TCM_046945" /note="dbxref CacaoGD:Thecc1EG046945" mRNA complement(join(249230..249513,249605..249711, 249923..253761)) /locus_tag="TCM_046945" /product="NBS type disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007029001" /inference="alignment:exonerate- protein:2:TAIR:AT3G14460.1.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042377t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06650.1" /note="quality class is strong-expertchoice, express is weak, homology is paralog strong, intron is weak, protein is complete; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17107t6; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc115t40" CDS complement(249955..253713) /locus_tag="TCM_046945" /note="paralog of Thecc1EG042377t1" /codon_start=1 /product="NBS type disease resistance protein, putative" /protein_id="EOY17581.1" /db_xref="Phytozome:POPTR_0001s06650.1" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q19PN7" /translation="MASREVLNFFSNRQLNDEQLDKLKRALLSVEAVLIDAEEQQMKN RAVQKWLDELKDAVYDAEDLLDEIESLALSLKLKEEPQTSCAPLGRNCFSFPNSCTRR MEPKLTAILNRLDDIGKQTDTLGLRNDVREKPSPKLPTTSLVDEADVYGRNDDREAII EMLLSDDASCHELGVITVVGMGGLGKTTVAQLVYNDSRVTEWFELKVWICVTEEFDVY RVTRTIIEGLTSTTCDIRDLNLLQIHLKERLQGRKFLLVLDDVWNKKYADWEALKRPL KSAAEGSKIIVTTRDEGVASVMRTTTSSYNLKQLLERDCWSLFTKHVSSGSGNTTIRP ELEAMGGEIVKKCKGLPLAIKTLGGLLRMKVGAREWDKILKSDIWEFSDDESDILPAL RLSYHYLPSYLKPCFAFCSLFPKDYRFKKEELVLLWMGEGLLDHAKGKGTMLEEVGDD YFDELASRSFFQRSSGSSRTWFVMHDLINDLAKFVSGKFFARFEDDGSCEINKRTRHF SYLLTHCDTSKKFEALNEAKYLRTFLPLDKYNKYDWVPRRSVSDIVTQDLLPKLGCLK VLSLSQYQNFDALPNSFGNLKLLRYLNLSFNRIKILPESVSALFHLQILLLSYCHDLV ELPTKLGRLTNLQHLDLRGTKLKEMPAHMGDLKDLHKLTTFVVGKHSGSSISELGELQ HLRGTLSISNLQNVGFSGDALKADLKGKKKLQKLVLRWSAEKADVPNFVPQRDLEHER NVLEQLQPSPDLEHLKIFGYGSAQFPEWVGHHSFSKIACMELSNCEHCLYLPALGHLR SLKKLHIRRLARVTAVASEFYGNGSSVKPFESLEILTFEKMQEWQEWLCLGDENGTFS SLQELYIIDCPKLTGDLPKTLPLLRKLWIENCERLASCLPRAPDMCKLKLVSCDKMQL QALPTELQELKIEECSVQHSMLEMMLQHCTRLEQLSIRSCSLECLPEGRLPVSLKRLK IDNCGELDFSRILLYTSLQVLKLIGAHDSLKSFSLGSFPNLNKCLFKHCTNIKFLSAL EGPDQQHLQSLDDICIYDCPNFVSFPKRGLSAPNLTTLSLHNCKNLKSLPEHMHSLLP SLDYLSVSNCPEIESFPEGGLPFKLKYLEINDCNKLIASRMEWGLHKLHCLTHFMMNG GDMEFFPDEQLLPSTITKLGIGSLPNLKTLDYKGLQHLTSIQELNLDSCPKLQSMPPE GLPVSFSSMSISRCPLLTKRCQKEKGKDWAKISHIPLIIIDYHQAVVA" gene complement(254926..259340) /locus_tag="TCM_046946" /note="dbxref CacaoGD:Thecc1EG046946" mRNA complement(join(254926..255127,255629..256306, 256385..256519,256592..257081,257142..259340)) /locus_tag="TCM_046946" /product="NBS type disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042380t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06650.1" /note="quality class is strong-expertchoice, express is weak, homology is paralog strong, intron is weak, protein is complete; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc111t50; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc118t40" CDS complement(join(255093..255127,255629..256306, 256385..256519,256592..257081,257142..259340)) /locus_tag="TCM_046946" /note="paralog of Thecc1EG042380t1" /codon_start=1 /product="NBS type disease resistance protein, putative" /protein_id="EOY17582.1" /db_xref="Phytozome:POPTR_0001s06650.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q19PN7" /translation="MASPEVLNFFSGGVNDEMLKKLKITLLSLEAVLNDAEERQMKNH AVKNWLDELKDAVYDAEDILEEIASLSFLRELKEEPQNSWASRVLNVFSFPNPFTKKM DPKLEEILNRLEHITKQINILGLRNDVREKPSPKLPTTSLVDASEVCGRNDDKEALIK MLLSDDSSSQELGVISIVGMGGLGKTTLAQLLYNDSTVTDWFELKVWVCVTEEFDVCR VTRSIIEGLTSTTCDIKDLNLLQIQLSERLKGKKFLLVLDDVWNKKYVDWEALKRPLK SAAEDSKIIVTTRDEGVASVMRTTTSSYNLKQLSETDCWSLFTNHVCSGSGNTTIRPD LEAMGREIVKKCKGLPLAIKTLGGLLHMKVDAKEWEKILKSDIWEFSDDESDILPALR LSYHYLPSYLKPCFAFCSLFPKDYLFQKEELVLLWMGEGLLDYAKGNGKMLEEVGDNC FDELASRSFFQRSSGYSGTRFVMHDLINDLAEFVSGKFFARLEDDGSCEINKRTRHFS YLVKEYDTSKRFKALNEAKHLRTFLPINRYSWKGKLGFFSDIITHDLLPKLGCLRVLS LSSHRTIHMLENSIGNLKLLRYLDLSYTAIKKLPESVSALFHLQILFLSYCQDLVELP TKLGRLINLQHLDLRGTKLKEMPAHMGKLKDLYTLTTFVVGKHSGSSISELGELQHLH GTVSIWNLQNVGSSGDALKANLKGKKKLQKLVLSWCDEIEDYSKYEADVPLLQPSPDL EHLKIFGYGGTQFPEWVGDHSFSKIACLELSNCEHCLSLPALGHLRSLKNLSIRGFAR VSAVGSEFYGNGSSMKSFESLEILRFEKMPEWQEWLCLGDENGTFSSLQELYIIDCPK LKGDLPKTLPLLRTFRIKNCEMLGSALSRAPDMHELELVNYSTLELMLQHCTRLEGLS IGRCASLKSLPEGRLPVSLKRLTIDNCESFPLCSFPNLNSLHFQHCTNIKSFSALEEP HQHLASLHSITIFDCPNFVSFPKGGLSAPNLITLCLFNCKNLKSLPEQMHSLLPSLDH LSVSNCPEIESFPEGGLPFNLKCLNIYNCNKLIAGQMGWGLHKLRCLTYFAMNGGDME FFPDEQLLPSTITHLRIDGLPNLKTLDYKGLQHLTSIRRLEVVNCAKLQSMPPEGLPV SLSSLSIRLCPLLTKRCQKEKVHLLIGFFLLS" mobile_element 260024..260626 /note="source:CACAO_Helitron_E81_scaffold_3 2545 3100" /mobile_element_type="transposon:Helitron" gene complement(262590..271193) /locus_tag="TCM_042377" /note="dbxref CacaoGD:Thecc1EG042377" mRNA complement(join(262590..262758,263687..267534, 270944..271193)) /locus_tag="TCM_042377" /product="NBS type disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024260.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042380t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06650.1" /note="quality class is strong-expertchoice, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc118t44" gene complement(262717..294163) /locus_tag="TCM_042380" /note="dbxref CacaoGD:Thecc1EG042380" mRNA complement(join(262717..262758,288653..288772, 289821..292652)) /locus_tag="TCM_042380" /product="LRR and NB-ARC domains-containing disease resistance protein, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G14460.1.8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042377t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013307001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg363t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg363t2; inference alignment:Newbler:10:TSA:cgbaL_g00154t00004" CDS complement(263719..267519) /locus_tag="TCM_042377" /note="paralog of Thecc1EG042380t1" /codon_start=1 /product="NBS type disease resistance protein, putative" /protein_id="EOY17583.1" /db_xref="Phytozome:POPTR_0001s06650.1" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q19PN7" /translation="MASREVLNFFSNRQLNDELLHKLKRTLLPVQAVLIDAEEKQMKN RAVQEWLDELKDAVYDAEDLLEEIESLTLSRKLKEEPQTSCTPLVRNCFSFPNPFTKR MERKLEAILNRLDDIAKQTDTLGLRNDVGEKPSPKLPTTSLVDESEVYGRTDDREALI KMLLSDDASCHELGVITIVGMGGLGKTTLAQLVYNDSTVREWFELKVWVCVTEEFDMY RLTRIIIEGLTSATCDIKDLNQLQIHLKERLQGRKFLLVLDDVWNKKYDDWEALKRPL KSAAEGSKIIVTTRDEGVASVMRTTTSSYNLKLLSEKDCWSLFIKHVCSGSGNTTIHP ELEAMGREIVKKCKGLPLAIKTLGGLLRMKVDAREWEKILRNDIWEFSDDESDILPAL RLSYHYLPSYLKPCFAFCSLFPKDYEFQREKLVLLWMGEGLLDGTKGNGKMLEEVGAY YFDELASRSFFQRSIGFSGTRFVMHDLMHDLAESVSGKFFARLEDDGSCEINEKTRHF SYLVKRYDTSKKFEALNEAKHLRTFLPVDRGPWNWLNRYVSDIITHDLLPKLGCLRVL SLSSYWNIHMLQNSIGNLKLLRYLDLSYTYIKKLPESVSHLFHLQILLLSYCCDLVEL PTKLGRLINLQHLDLRGTKLKEMPAHMGKLKDLHKLTTFVVGKHSGSSISELGELQHL HGTLSILNLQNVGCSGDALKADLKGKKKLQGLVLSWGDEIEDYSKDMFVVPLFMEREA EVPKCVPHEDLDHQRNVLEQLQPSPDLEHLKIFYYGGTQFPEWVGDHSFSKIVSLELG NCEHCLSLPALGHLRSLKNLSLRGFPRVTAVGSEFYGNGSSMKSFDSLEILRFENMPE WKKWLCLGDENGTFCSLQELYIIDCPKLKGDLPKTLPLLRKFRIENCETLGSALSRAP DMHELKLVNCDKMQLQALPTELQNLAVENCSVQDSSLELMLQHCTRLEGLSIGSCASL KSLPEGRLPVSLKRLMINNCGEFDFSRILLCTSLENLNVLNALDSLESFSLGSFPNLN SLNFSLCTNIKSFSALEGPHQHLPSLHSINIFDCPNFVSFPKGGLSAPNLTMLYLFNC KNLKSLPEQMHSLLPSLDYLSVANCSEIESFPEGGLPFNLQFLDISCCNKLIAGRMGW GLHKLRCLTYFKMSGGDMEFFPDEQLLPSTITNLHISWLPNLKTLDYKGLQPLTSIQE LDINFCPKLQSMPPEGLPVSLSSISISDCPLLTKRCQKEKGKDWAKISHIPSITIDGQ VIIA" mobile_element 268573..269175 /note="source:CACAO_Helitron_E81_scaffold_3 2554 3100" /mobile_element_type="transposon:Helitron" gene complement(271240..288123) /locus_tag="TCM_042379" /note="dbxref CacaoGD:Thecc1EG042379" mRNA complement(join(271240..271336,271474..271593, 272832..273447,273748..276765,281684..283643, 283789..285486,287907..288123)) /locus_tag="TCM_042379" /product="LRR and NB-ARC domains-containing disease resistance protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024260.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042377t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032210001" /note="quality class is strong-expertchoice, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg371t1" CDS complement(join(272864..273447,273748..276765, 281684..283643,283789..285471)) /locus_tag="TCM_042379" /note="paralog of Thecc1EG042377t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein" /protein_id="EOY17586.1" /db_xref="Phytozome:GSVIVT01032210001" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I6Q9" /translation="MASREVLNFFSNRQLNDELLHKLKRTLLPVQAVLIDAEEKQMKN RAVQEWLDELKDAVYDAEDLLEEIESLTLSRKLKEEPQTSCTPLVRNCFSFPNPFTKR MERKLEAILNRLDDIAKQTDTLGLRNYVGEKPSPKLPTTSLVDESEVYGRTDDREALI KMLLSDDASCHELGVITIVGMGGLGKTTLAQLVYNDSTVREWFELKVWVCVTEKFDLY GVTRTIIERLASTTCDIKDLNLLQIQLSERLKGKKFLLVLDDVWNKKYANWEALELPL KSAAEGSKIIVTTRDEGVASVMRTTTSSYNLKPLPEKDCWSLFTKQVCSGSRNTTIRP DLEAMGREIVKKCKGLPLAIKTLGGLLRMKVDANKWEKILKSDIWEFSDEESDILPAL MLSYHYLPSYLKPCFAFCSLFPKDYLFQKEKLVLLWMGEGLLDNFKEKGKTLEEVGDD CFDELASRSFFQRSSGSGTQLVMHGLMHDLAEFVSGKFFARLEDDGSCEINRRTRHFS YLTEEYDTSKRFGALNEARRLRTFLNVDKYPWMKKYIADTITHDLLPNLGCLKLLRYL DLSYTAIKKLPESVSALFHLQILLLSYCRNLVELPTKLGRLINLQHLDLNGTKLKEMP AHMGKLKDLYTLTTFVVGKHSGSSISELGELQHLHGTLSILNLQNVGCSGDALEANLK GKKKLQKLVLIWCDGIEDYSNYEADVPLVKKRKVAVPKFVPHEDVLEQLQPSPDLEHL KIFGYGGTQFPEWVGDHSFSKIACLELSNCEHCLSLPALGHLRSLKNLCIRGFARVSA VGSEFYGNGSSMKSFDSLEILRFENMPEWKQWLCLGDENGTFCSLQELYIIDCPKLKG DLPKTLPLLRKFRIENCETLGSALSRAPDMHELKLVNCDKMQLQALPTELQNLAVENC SVQDSSLELMLQHCTRLEGLSIGSCASLKCLPEGRLPVSLKRLKIHDCGEFDFSRILL YTSLQALEVWNSHDSLESFPLGSFPNLNHFALGSWENIKSFSALEGPHQHLPSLHTIH ISDCPNFESFPKGGLSAPNLTTLCLLNCEILKSLPEQMRSLLPSLEYLDIFNCPEIES FPEGGLPVKLKNLKISCCNKLTAVRTEWGLDKLPCLRRFEMIGGDMEFFPDEQLLPST ITNLCIRSLPNLKTLDYKGLQHLTSIRELDVSDCPKLQSMPLEGLPVSLSSISIVSCP LLTKRCQKEKGETMAAELVGGAFLSSLFGVLFDRMASPEVLNFFSGGVNDEMLKKLKI TLLSLEAVLNDAEERQMKNHAVKNWLDELKDAVYDAEDILEEIASLSFLRELKEEPQN SWASRVLNVFSFPNPFTKKMDPKLEEILNRLEHITKQINILGLRNDVREKPSPKLPTT SLVDASEVCGRNDDKEALIKMLLSDDSSSQELGVISIVGMGGLGKTTLAQLLYNDSTV TDWFELKVWVCVTEKFDVYGVTRTIIERLASTTCDIKDLNLLQIQLSERLKGKKFLLV LDDVWNKKYANWEALELPLKSAAEGSKIIVTTRDEGVASAMRTTTSSYNLKPLSEKDC WSLFTKQVCSGSRNTTIRPDLEAMGREIVKKCKGLPLAIKTLGGLLRMKVDANKWEKI LKSDIWEFSDEESDILPALMLSYHYLPSYLKPCFAFCSLFPKDYLFQKEKLVLLWMGE GLLDNFKEKGRTLEEVGDDCFDELASRSFFQRSSGSGTQFVMHDLLHDLAEFVSGKFL ARLEDDGSCEINKRTRHFSYVTKEYGTYKRFEALNEARRLRTFLNVDKYPWMEKYIAG TITHDLLPNLGCLKVLSLSQYPNINLLVNSIGNLKLLRYLDLSDTAIKKLPESVSALF HLQILLLSNCWNLVELPTKLGRLINLQHLDLNFTQLKEMPAHMGKLKNLHKLTTFVVG KNGGSSISELGELQHLHGTLSILNLQNVGCSGDALKANLKGKKKLQKLVLSWCDEIED HSKYEADVPLVKKRKVAVPKFVPHEYLLEQLQPSPDLEHLKIFGYGGTQFPEWVGDHS FSKIACLELSNCEHCLSLPALGHLRSLKNLCIRRFARVTAVGSEFYGNGSSMKSFESL EILRFERMPEWQEWLCLGDENGTFSSLQELYIIDCPKLKGDLPKTLPLLRKFRIKNCK MLGSALSRAPDMDELELVNCDEMQLQALPTELQNLTIKNCSVQDSTLELMLQHCSRLE GLSIGSCAALKSLPEGRLPVSLKKLEIDNCGGLSAPNLTSLYLFDFKNLKSLPEQMHS LLPSLRYLTVSNCSEIESFPEGGLPFNLKCLTINNCNKLIAGRMGWGLHKLRCLTHFD MIGGDMEFFPDEQLLPPTITNLHIIGLPNLKTLDYKGLQHLTSIRRLKIDNCGELQSM PPEGLPFSLSSLIIYACPLLTERCQMEKGKDWAKISHIPLITIDGEVIIA" mobile_element 278208..278774 /note="source:CACAO_Helitron_E81_scaffold_3 2554 3100" /mobile_element_type="transposon:Helitron" mobile_element 279590..279642 /note="source:CACAO_Helitron_S_E13_scaffold_2 108 160" /mobile_element_type="transposon:Helitron" mobile_element 286420..286609 /note="source:CACAO_Helitron_E81_scaffold_3 586 783" /mobile_element_type="transposon:Helitron" mobile_element 286721..287141 /note="source:CACAO_Helitron_E81_scaffold_3 2731 3100" /mobile_element_type="transposon:Helitron" mRNA complement(join(288173..288515,288653..288772, 289821..294163)) /locus_tag="TCM_042380" /product="LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G14460.1.8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042377t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s38870.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg363t2" CDS complement(289853..293686) /locus_tag="TCM_042380" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042377t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1" /protein_id="EOY17584.1" /db_xref="Phytozome:POPTR_0001s38870.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I6Q9" /translation="MAELVGGAFLSSFLEVLFGKMASREVLNFFNSRELNDELLDKLK RTLLSIEAVLIDAEEKQMKNRAVQKWLDELKDAVYDAEDLLDEIESLTFSRKLKEEPQ TSCASLVRNCFSFPNPFTKSMGPKVEEILNRLEHLAKQTAVLGLRNDVREKPSPKLPT TSLVDESDVYGRNDDREAITKMLLSDDASCRELRVITIVGMGGLGKTTLAQLVYNDSR VTEWFELKVWVCVTEEFDVCRVTRSIIEGLTSTTCDIKDLNLLQIQLSERLKGKKFLL VLDDVWNKKYVDWEALKRPLKSAAEDSKIIVTTRDEGVASVMRTTTSSYNLKPLSEKD CWSLFTNHVCSGSGNTTIRPDLEAMGREIVKKCKGLPLAIKTLGGLLHMKVDAKEWEK ILKSDIWEFSDDESDILPALRLSYHYLPSYLKPCFAFCSLFPKDYLFQKEKLVLLWMG EGLLDNFKEKGRTLEEVGDDCFDELASRSFFQRSSGSGTHFVMHDLMHDLAEFVSGKF FARLEDDGSCEINRRTRHFSYLTKGYDTSKRFGALNEARRLRTFLNVDKYPWMEKYIA DTITHDLLPNLGCLKVLSFSQYRNINVLVNSIGNLKLLRYLDLSYTVIKKLPESASAL FHLQILLLSNCWRLVELPTKLGRLINLQHLDLNDTMLKEMPAHMGKLKNLHKLTTFVV GKNSGSSISELGELQHLHGTLSILNLQNVGCSGDALKANLKGKKKLQKLVLSWCDEIE DHSKYEADVPLVKNRKVAVPKFVPHEYLLEQLQPSPDLEHLKIFGYGGTQFPEWVGDH SFSKIACLELSNCEHCLSLPALGHLRSLKNLCIGGFARVTAVGSEFYGNGSSMKSFES LEILRFEKMPEWQEWLCLGDENGTFSSLQELYIIDCPKLKGDLPKTLPLLRKFGIENC EMLGSALSRAPDMDELELVNCDKMQLQALPTELQKLTIKYCSVQDSTLELMLQHCSRL EGLSIGSCAALKSLPEGRLPVSLKKLEIDNCGEFDFSRIHLYTSLEKLNVSNALDSLE SFPLGSFPNLNSLNFRRCTNIKSFSALEEPHQHLPSLHSITIYDCPNFVSFPKGGLSA PNLTRLCLFNCKNLKSLPEQMHSLLPSLDSLIVVICSEIESFPEGGLPLNLKYIRISY CNKLIAGRMGWGLHKLRCLKHFEMGGGDMEFFPDEQLLPPTITNLHINGVPNLKTLDY KGLQHLTSIRRLEVANCAKLQSMPPEGLPVSLSSLSIRFCPLLTKRCQKERGKDWAKI SHIPSIEIDDQVIIA" CDS complement(289853..292612) /locus_tag="TCM_042380" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042377t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative isoform 2" /protein_id="EOY17585.1" /db_xref="Phytozome:GSVIVT01013307001" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I6Q9" /translation="MGREIVKKCKGLPLAIKTLGGLLHMKVDAKEWEKILKSDIWEFS DDESDILPALRLSYHYLPSYLKPCFAFCSLFPKDYLFQKEKLVLLWMGEGLLDNFKEK GRTLEEVGDDCFDELASRSFFQRSSGSGTHFVMHDLMHDLAEFVSGKFFARLEDDGSC EINRRTRHFSYLTKGYDTSKRFGALNEARRLRTFLNVDKYPWMEKYIADTITHDLLPN LGCLKVLSFSQYRNINVLVNSIGNLKLLRYLDLSYTVIKKLPESASALFHLQILLLSN CWRLVELPTKLGRLINLQHLDLNDTMLKEMPAHMGKLKNLHKLTTFVVGKNSGSSISE LGELQHLHGTLSILNLQNVGCSGDALKANLKGKKKLQKLVLSWCDEIEDHSKYEADVP LVKNRKVAVPKFVPHEYLLEQLQPSPDLEHLKIFGYGGTQFPEWVGDHSFSKIACLEL SNCEHCLSLPALGHLRSLKNLCIGGFARVTAVGSEFYGNGSSMKSFESLEILRFEKMP EWQEWLCLGDENGTFSSLQELYIIDCPKLKGDLPKTLPLLRKFGIENCEMLGSALSRA PDMDELELVNCDKMQLQALPTELQKLTIKYCSVQDSTLELMLQHCSRLEGLSIGSCAA LKSLPEGRLPVSLKKLEIDNCGEFDFSRIHLYTSLEKLNVSNALDSLESFPLGSFPNL NSLNFRRCTNIKSFSALEEPHQHLPSLHSITIYDCPNFVSFPKGGLSAPNLTRLCLFN CKNLKSLPEQMHSLLPSLDSLIVVICSEIESFPEGGLPLNLKYIRISYCNKLIAGRMG WGLHKLRCLKHFEMGGGDMEFFPDEQLLPPTITNLHINGVPNLKTLDYKGLQHLTSIR RLEVANCAKLQSMPPEGLPVSLSSLSIRFCPLLTKRCQKERGKDWAKISHIPSIEIDD QVIIA" gene complement(294904..295807) /locus_tag="TCM_042381" /note="dbxref CacaoGD:Thecc1EG042381" mRNA complement(join(294904..295132,295495..295807)) /locus_tag="TCM_042381" /product="High chlorophyll fluorescence 153, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g20920.1" /inference="similar to AA sequence:TAIR:AT4G31560.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17124t00001" CDS complement(join(294992..295132,295495..295791)) /locus_tag="TCM_042381" /codon_start=1 /product="High chlorophyll fluorescence 153, putative" /protein_id="EOY17587.1" /db_xref="TAIR:AT4G31560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GX98" /translation="MASLSITSTISSFSPSVVLCPPVARTSSRPLGLPTPPAVAFSSH LYHHRKPRGLAVVTRAGPNTSSYVFAVVFPLSLLAVTIFTSIKIADKLDKDFLEDLTI NQAIREADEDDGGIDADDDEISLEDIVQEPMLPRTRNRPKREV" mobile_element 296013..296056 /note="source:CACAO_M_S_E52236_F51_scaffold_5 1796 1838" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 296068..299687 /locus_tag="TCM_042382" /note="dbxref CacaoGD:Thecc1EG042382" mRNA join(296068..297080,297178..297483,297587..297756, 297841..297890,298039..298380,298478..298891, 298981..299687) /locus_tag="TCM_042382" /product="Glycosyl hydrolase family protein" /inference="alignment:exonerate- protein:2:frave:gene30561.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042385t1" /inference="similar to AA sequence:frave:gene30561" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(296637..297080,297178..297483,297587..297756, 297841..297890,298039..298380,298478..298891, 298981..299594) /locus_tag="TCM_042382" /note="dbxref frave:gene30561; paralog of Thecc1EG042385t1" /codon_start=1 /product="Glycosyl hydrolase family protein" /protein_id="EOY17588.1" /db_xref="TAIR:AT3G19620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HEC5" /translation="MAAQSFKVLRILFFLIIYFLPIFVAGGDIKPIADLPSYVCDPHK WELRGMNMSAIGYCDKSLPYEVRAKDLVDRLTLAEKVQQMGNNASSIPRLGLPAYNWW SEALHGVSNVGPGTFFTEIVPGATSFPTVIHTTAAFNQSLWNAIGKVVSTEARAMYNL GQGGLTYWSPNINPVRDPRWGRITETSGEDPFVVGVYGANYVRGLQDVEGQEHTADPG SRPLKVSACCKHYAAYDVDNWYEFDRLKFDAQVTEQDMVETFLRPFEMCVKDGDVSSV MCSYNQVNKVPTCADPILLKQTLREEWKLNGYIVSDCDSVEVIHKEQRLDLDCGVTYP TALENSVKQGKANEAEIDTSLKYLYVVLMRLGFFDGSPSFTSLGKDDVCTQDHIELAA EAAREGIVLLNNVDATLPLNPDAFKTLAIIGPLANATKQMLGNYEGLPCQYVSPLSGF SAFGQVIYEQGCPNVKCPNDTLILQATEAAKQADATILVVGTDRTIEEESRDRYDLLL PGLQKDLINQVANASKGPVILVVMSAGGVDISFAKDNNRIKGILWVGHPGQEGGRAIA DVVFGKYNPGGRLPLTWYTADYVSKLPMTSMPLRPVEEKGYPGRTYKFFNGSVVYPFA YGLSYTTFNYKVTTPTNVSIPIKLNKNQQCRELELTDTSIEQPCPSVVVNDLTCEDKI AFEVEVQNTGDKDGSEVVIVYSKPPEGIVGTPFKQVVGFERVFVAAKQSQKVKFELNE CKSLNIVDSSGYRILPSGLHKIALGTSSEQIEVDVSFAR" gene complement(299759..301108) /locus_tag="TCM_042383" /note="dbxref CacaoGD:Thecc1EG042383" mRNA complement(join(299759..300295,300523..301108)) /locus_tag="TCM_042383" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042386t3" /inference="similar to AA sequence:ricco:30131.m007251" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS complement(299930..300133) /locus_tag="TCM_042383" /note="dbxref ricco:30131.m007251; paralog of Thecc1EG042386t3" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17589.1" /translation="MLTLFDMSLLFCILKFKDAGMDWILHLDTDELIHPAGASEYSLR QLLLDVPNKVDMVIFPDYVSGII" gene 301203..305176 /locus_tag="TCM_042384" /note="dbxref CacaoGD:Thecc1EG042384" mRNA join(301203..301732,301829..302134,302224..302393, 302478..302542,302684..303025,303112..303525, 303630..305176) /locus_tag="TCM_042384" /product="Glycosyl hydrolase family protein" /inference="alignment:exonerate- protein:2:frave:gene30561.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042385t1" /inference="similar to AA sequence:frave:gene30561" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS join(301286..301732,301829..302134,302224..302393, 302478..302542,302684..303025,303112..303525, 303630..304243) /locus_tag="TCM_042384" /note="dbxref frave:gene30561; paralog of Thecc1EG042385t1" /codon_start=1 /product="Glycosyl hydrolase family protein" /protein_id="EOY17590.1" /db_xref="TAIR:AT3G19620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HEC5" /translation="MAAQSFNVLCTLCLVIIYFLPICLAFGGDLKPIPAPPSYVCDPK LWEARGVNMAEMGYCDKSLPYDVRAKDLVDRMTLKEKAQQMGDRASGIPRLGLPDYKW WSEALHGVSHFGYGAFFTEIVPGATSFPTVILTTAAFNQSLWNAIGKVVSTEARAMYN LGQAGLTFWSPNINPVRDPRWGRITETSGEDPFVVGVYGVNYVRGLQDVEGQEHAEDP GSRPLKVAACCKHYAAYDLDLWQDVNRFTFDALVTEQDMVETFVRPFEMCIKDGDVSS VMCSYNQVNKIPSCADPILLKQTIREEWKLNGYIISDCDAIEMIHNDTKINWLGVDLD CGVNYPNALENSVRQGKVNEADVDTSLKYLYTVLMRLGFFDGSPSFMSLGKNDICTDK HIDLAVEAAREGIVLLKNLDATLPLNPDAFKTLAIIGPHANATTAMIGNYEGNPCRYV SPLSGFSAFGEVIYEQGCPGVKCPNDTLILQATEAAKQADATILVVGTDLSIEGEGLD REDLLLPGLQKDLVEQVANASKGPVILVVMTAGGVDISFAKDDNKIKGILWVGHPGQE GGRAIADVVFGKCNPGGRLPLTWYTADYVDKLPMTSMQLRPFEEKGYPGRTYKFFNGS TVYPFAYGLSYTSFDYKVTTPTNVSIPIKLNNTQHCRELELTDTSVQQPCPSVVVNDL TCEDKIAWEVEVQNTGDKDGSEVVIVYSQPPDGIVGTPFKQVVGFERVFVAAKQSQKV NFELNACKSLNIVDGRGYTLLPSGLHKIMLGTSSEQIDVNVSFTS" gene 305268..309775 /locus_tag="TCM_042385" /note="dbxref CacaoGD:Thecc1EG042385" mRNA join(305268..305513,306267..306824,306925..307230, 307321..307490,307578..307642,307786..308127, 308217..308630,308733..309775) /locus_tag="TCM_042385" /product="Glycosyl hydrolase family protein" /inference="alignment:exonerate- protein:2:ricco:29693.m002045.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042384t1" /inference="similar to AA sequence:frave:gene30561" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS join(306375..306824,306925..307230,307321..307490, 307578..307642,307786..308127,308217..308630, 308733..309346) /locus_tag="TCM_042385" /note="dbxref frave:gene30561; paralog of Thecc1EG042384t1" /codon_start=1 /product="Glycosyl hydrolase family protein" /protein_id="EOY17591.1" /db_xref="TAIR:AT5G64570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HEC5" /translation="MAAQSFNVLCALSLVIIYFLPICLAFGGDLKQQGDPPSIVCDPH EWEARNVNMSDIGYCDTSLPYEVRAKDLVDRMNLTEKVHWMGDNVSKPIPRFRLPKYQ WWSEALHGVAHVGRGTFFTELVPGATSFPTVIHTTASFNKSLWNAIGKVVSTEARAMY NLGQGGLTYWSPNINPVRDPRWGRITETSGEDPFVVGVYGVNYVRGLQDIEGQEHTAD PGSRPLKVSACCKHFAAYDLDNWKKVNRQTFDAQVTEQDMVETFLRPFEMCVRDGDVS SVMCSFNKVNKVPTCADPFLLKKTFREEWKLNGYIVADCDSIEVMHNDNKMNWLGLDL DCGDTYPKSLEKSVKQGKVNEADVDKSLKYLFVVLMRLGFFDGSPSFKSLGKKDICTQ EHVELAGQAAREGIVLLNNVDATLPLNPEAFKTLAIIGPLANATKQMLGNYEGNPCRY VSPLSGFSAFGQVIYAEGCPGLNCPNDTKITEATEAAKQADATILVVGTDLSIEREDH DRNDLLLPGLQQDLVEQVANASKGPVILVVMTAGGVDISFAKDDNKIKGILWVGHPGQ EGGRAIADVVFGKYNPGGRLPVTWYTADYVDKLPMTSMQLRPVEEKGYPGRTYKFFNG STVYPFAYGLSYTSFNYKLTTPTNVSIPIKLNNTQHCHELELTDTSVQQPCPSVVVND LTCEDKIALEVEVQNTGDKDGSEVVIVYSKPPDGIVGTPFQQVVEFERVFVAAKQSQK VNFELNVCKSLNIVDSSGYKVLPSGLHKIMLGTSSEQIDVNVSFAS" gene complement(309439..314478) /locus_tag="TCM_042386" /note="dbxref CacaoGD:Thecc1EG042386" mRNA complement(join(309439..310239,310349..310436, 310559..310605,311287..311428,311763..311950, 312064..312108,312250..312384,312503..312611, 312962..313014,313160..313309,313879..314478)) /locus_tag="TCM_042386" /product="Elongation defective 1 protein / ELD1 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06000.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024494t1" /inference="similar to AA sequence:Phytozome:Glyma11g20930.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08289t00001" mRNA complement(join(309580..310239,310349..310373, 311763..311950,312064..312108,312250..312384, 312503..312611,312962..313014,313160..313309, 313879..>314248)) /locus_tag="TCM_042386" /product="Elongation defective 1 protein / ELD1 protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06000.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024494t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06000.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc19892t1; inference alignment:Newbler:10:TSA:cgbaL_g08289t00001" mRNA complement(join(309618..310239,310349..310436, 310557..310605,311287..311428,311763..311950, 312061..312108,312250..312384,312503..312611, 312962..313014,313160..313309,313879..314295)) /locus_tag="TCM_042386" /product="Elongation defective 1 protein / ELD1 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06000.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024494t1" /inference="similar to AA sequence:TAIR:AT3G08550.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg309t2; inference alignment:Newbler:10:TSA:cgbaL_g08289t00001" CDS complement(join(309958..310239,310349..310436, 310559..310605,311287..311428,311763..311950, 312064..312108,312250..312384,312503..312611, 312962..313014,313160..313309,313879..314262)) /locus_tag="TCM_042386" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG024494t1" /codon_start=1 /product="Elongation defective 1 protein / ELD1 protein isoform 1" /protein_id="EOY17592.1" /db_xref="Phytozome:Glyma11g20930.1" /db_xref="TAIR:AT3G08550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9SZX1" /translation="MPTHHHHHHRSTPLLSSTSAASSSSQSFLSKLLLLLTILPVSLA ALAFVLQWRGGSVSDPTVVTSSATSRWAPLGSHHEVFPGMETFSSLSPKSHSSADCIN LGRSSSPSFPYYGDWKFGFEANLKPKICVTTSTSAGLEQILPWMFYHKVIGVTTFFLF VEGHAASPNVSRVLESIPGVKVIYRTRELEEQQAKSRIWNETWLSSFFYKPCNYELFV KQSLNMEMAIVMARDAGMDWILHLDTDELIHPAGASEYSLRQLLLDVPRNVDMVIFPN YESSVERDDIKDPFSEVSMFKKNYDHLPKDTYFGMYKESTRGNPNYFLTYGNGKAAAR IQDHLRPNGAHRWHNYMKTPNEIKLEEAAVLHYTYAKFSDLTSRRNRCGCKPTKEDVK RCFMLEFDRAAFIIASTATEEEMLNWYREHVVWGEKDLRLKLLRKGILTRIYAPMAII QGLRESGVFSSIIATAPTTLSRDKFLASVDSSNSSRAVPSVSFASRKIGRSREHQASA RKVLEIEASADHEAAVPPLSPPSMDNDDLIRE" CDS complement(join(309958..310239,310349..310373, 311763..311950,312064..312108,312250..312384, 312503..312611,312962..313014,313160..313309, 313879..>314247)) /locus_tag="TCM_042386" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG024494t1" /codon_start=1 /product="Elongation defective 1 protein / ELD1 protein isoform 3" /protein_id="EOY17594.1" /db_xref="Phytozome:POPTR_0001s06000.1" /translation="HHHHRSTPLLSSTSAASSSSQSFLSKLLLLLTILPVSLAALAFV LQWRGGSVSDPTVVTSSATSRWAPLGSHHEVFPGMETFSSLSPKSHSSADCINLGRSS SPSFPYYGDWKFGFEANLKPKICVTTSTSAGLEQILPWMFYHKVIGVTTFFLFVEGHA ASPNVSRVLESIPGVKVIYRTRELEEQQAKSRIWNETWLSSFFYKPCNYELFVKQSLN MEMAIVMARDAGMDWILHLDTDELIHPAGASEYSLRQLLLDVPRNVDMVIFPNYESSV ERDDIKDPFSEVSMFKKNYDHLPKDTYFGMYKESTRGNPNYFLTYGNGKAAARIQDHL RPNGAHRWHNYMKTPNLTRIYAPMAIIQGLRESGVFSSIIATAPTTLSRDKFLASVDS SNSSRAVPSVSFASRKIGRSREHQASARKVLEIEASADHEAAVPPLSPPSMDNDDLIR E" CDS complement(join(310393..310436,310557..310605, 311287..311428,311763..311950,312061..312108, 312250..312384,312503..312611,312962..313014, 313160..313309,313879..314262)) /locus_tag="TCM_042386" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG024494t1" /codon_start=1 /product="Elongation defective 1 protein / ELD1 protein isoform 2" /protein_id="EOY17593.1" /db_xref="TAIR:AT3G08550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9SZX1" /translation="MPTHHHHHHRSTPLLSSTSAASSSSQSFLSKLLLLLTILPVSLA ALAFVLQWRGGSVSDPTVVTSSATSRWAPLGSHHEVFPGMETFSSLSPKSHSSADCIN LGRSSSPSFPYYGDWKFGFEANLKPKICVTTSTSAGLEQILPWMFYHKVIGVTTFFLF VEGHAASPNVSRVLESIPGVKVIYRTRELEEQQAKSRIWNETWLSSFFYKPCNYELFV KQSLNMEMAIVMARDAGMDWILHLDTDELIHPAGASEYSLRQLLLDVPRNVDMVIFPN YESSVERDDIKDPFSEVVSMFKKNYDHLPKDTYFGMYKESTRGNPNYFLTYGNGKAAA RIQDHLRPNGAHRWHNYMKTPNEIKLEEAAVLHYTYAKFSDLTSRRNRCGCKPTKEDV KRCFMLEFDRAAFIIASTATEEEMLNWCIVNMLYGVKKTLD" gene 314618..319322 /locus_tag="TCM_042388" /note="dbxref CacaoGD:Thecc1EG042388" mRNA join(314618..315011,315431..316114,316258..316448, 316932..317179,317572..317717,317969..318145, 318490..319322) /locus_tag="TCM_042388" /product="Ubiquitin-specific protease 24 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20160.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20160.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b040911t1a3; inference alignment:Newbler:10:TSA:cgbaP2_g04443t00001" mRNA join(314618..315011,315434..316114,316258..316448, 316932..317179,317572..317717,317966..318145, 318490..319322) /locus_tag="TCM_042388" /product="Ubiquitin-specific protease 24 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20160.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20160.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b040911t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g04443t00001" mRNA join(314733..315011,315434..316114,316258..316448, 316932..317179,317572..317717,317969..318145, 318476..319223) /locus_tag="TCM_042388" /product="Ubiquitin-specific protease 24 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20160.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20160.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc162t7; inference alignment:Newbler:10:TSA:cgbaP2_g04443t00001" mRNA join(314798..315011,315434..316114,316258..316448, 316932..317179,317572..317717,317969..318145, 318490..319322) /locus_tag="TCM_042388" /product="Ubiquitin-specific protease 24 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20160.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20160.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04443t00001" mRNA join(314829..314856,315434..316114,316258..316448, 316932..317176,317570..317717,317969..318145, 318490..319223) /locus_tag="TCM_042388" /product="Ubiquitin-specific protease 24 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20160.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20160.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc162t5; inference alignment:Newbler:10:TSA:cgbaP2_g04443t00001" CDS join(314830..314856,315434..316114,316258..316448, 316932..317176,317570..317717,317969..318023) /locus_tag="TCM_042388" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Ubiquitin-specific protease 24 isoform 5" /protein_id="EOY17599.1" /db_xref="Phytozome:POPTR_0003s20160.1" /db_xref="TAIR:AT4G30890.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SQ20" /translation="MLSLYLPFKVFLFGSFSEDETRSLLSKRSAGNAEKPVQKKELQS GSLNFAAGGSLGGANGDLSNKPSSTNRPVGFLSSTSPIADRKSIKSARDHTSTTLQTP KENGTTKSTNESSSLSNGIKQLNVKSTDVTSLHLSQNDCGSLNNFQSLKFHVLESESM EGRDQNGMIDISLACTVDGDIPKAAKEPITVAKNLLSRGLINTGNLCFLNATLQALLS CSPFVQLLQRLRLRNIPKVGFPTLTAFAEFVSDFDVPSSNPNVKKKDTTVLEIGRPFS PAMFEAVLKSFTPDVPNSISGRPRQEDAQEFLSFIMDQMHNELIKLDGQPSSSIGVRS SLVSSVEDDEWETVGPKNKSAITRTQSFLPSELSDIFGGQLRSVVKAKETRLQLLFNH FYCSTLISTLKLFLLLRMPFIYFLHQNIWRGIAHQQLGRLVLSLPENLSRYRHFQR" CDS join(314997..315011,315434..316114,316258..316448, 316932..317179,317572..317717,317969..318145, 318476..318838) /locus_tag="TCM_042388" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ubiquitin-specific protease 24 isoform 2" /protein_id="EOY17596.1" /db_xref="Phytozome:POPTR_0003s20160.1" /db_xref="TAIR:AT4G30890.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SQ20" /translation="MTDSKVFLFGSFSEDETRSLLSKRSAGNAEKPVQKKELQSGSLN FAAGGSLGGANGDLSNKPSSTNRPVGFLSSTSPIADRKSIKSARDHTSTTLQTPKENG TTKSTNESSSLSNGIKQLNVKSTDVTSLHLSQNDCGSLNNFQSLKFHVLESESMEGRD QNGMIDISLACTVDGDIPKAAKEPITVAKNLLSRGLINTGNLCFLNATLQALLSCSPF VQLLQRLRLRNIPKVGFPTLTAFAEFVSDFDVPSSNPNVKKKDTTVLEIGRPFSPAMF EAVLKSFTPDVPNSISGRPRQEDAQEFLSFIMDQMHNELIKLDGQPSSSIGVRSSLVS SVEDDEWETVGPKNKSAITRTQSFLPSELSDIFGGQLRSVVKARGNKASATVQPFLLL HLDIHPEAVLTIEDALHLFSAPEYLEGYRASTAGKAGVVTARKSVKIQTLSKIMILHL MRFSYGSQGSTKLHKPVRFPLELVLGRELLVSPSTEYFIYRAENMNLLLQLPTMEESP LRGIIQLMLVTSMANGYDLTMPPSQPLGQARCCMTKHTFSSTNKHRRRQSFGVFWLHI HCSHYAQPILKLVCVRNIEWLQNWLSDFSFSCNSWSHLNL" CDS join(314997..315011,315431..316114,316258..316448, 316932..317179,317572..317717,317969..318145, 318490..318678) /locus_tag="TCM_042388" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Ubiquitin-specific protease 24 isoform 4" /protein_id="EOY17598.1" /db_xref="Phytozome:POPTR_0003s20160.1" /db_xref="TAIR:AT4G30890.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGG1" /translation="MTDSKQVFLFGSFSEDETRSLLSKRSAGNAEKPVQKKELQSGSL NFAAGGSLGGANGDLSNKPSSTNRPVGFLSSTSPIADRKSIKSARDHTSTTLQTPKEN GTTKSTNESSSLSNGIKQLNVKSTDVTSLHLSQNDCGSLNNFQSLKFHVLESESMEGR DQNGMIDISLACTVDGDIPKAAKEPITVAKNLLSRGLINTGNLCFLNATLQALLSCSP FVQLLQRLRLRNIPKVGFPTLTAFAEFVSDFDVPSSNPNVKKKDTTVLEIGRPFSPAM FEAVLKSFTPDVPNSISGRPRQEDAQEFLSFIMDQMHNELIKLDGQPSSSIGVRSSLV SSVEDDEWETVGPKNKSAITRTQSFLPSELSDIFGGQLRSVVKARGNKASATVQPFLL LHLDIHPEAVLTIEDALHLFSAPEYLEGYRASTAGKAGVVTARKSVKIQTLSKIMILH LMRFSYGSQGSTKLHKPVRFPLELVLGRELLVSPSTEGRKYELVATITHHGREPSKGH YTADARYLNGQWLRFDDASVTAIGTSKVLHDQAYVLFYKQA" CDS join(314997..315011,315434..316114,316258..316448, 316932..317179,317572..317717,317966..318145, 318490..318678) /locus_tag="TCM_042388" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ubiquitin-specific protease 24 isoform 3" /protein_id="EOY17597.1" /db_xref="Phytozome:POPTR_0003s20160.1" /db_xref="TAIR:AT4G30890.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGG1" /translation="MTDSKVFLFGSFSEDETRSLLSKRSAGNAEKPVQKKELQSGSLN FAAGGSLGGANGDLSNKPSSTNRPVGFLSSTSPIADRKSIKSARDHTSTTLQTPKENG TTKSTNESSSLSNGIKQLNVKSTDVTSLHLSQNDCGSLNNFQSLKFHVLESESMEGRD QNGMIDISLACTVDGDIPKAAKEPITVAKNLLSRGLINTGNLCFLNATLQALLSCSPF VQLLQRLRLRNIPKVGFPTLTAFAEFVSDFDVPSSNPNVKKKDTTVLEIGRPFSPAMF EAVLKSFTPDVPNSISGRPRQEDAQEFLSFIMDQMHNELIKLDGQPSSSIGVRSSLVS SVEDDEWETVGPKNKSAITRTQSFLPSELSDIFGGQLRSVVKARGNKASATVQPFLLL HLDIHPEAVLTIEDALHLFSAPEYLEGYRASTAGKQAGVVTARKSVKIQTLSKIMILH LMRFSYGSQGSTKLHKPVRFPLELVLGRELLVSPSTEGRKYELVATITHHGREPSKGH YTADARYLNGQWLRFDDASVTAIGTSKVLHDQAYVLFYKQA" CDS join(314997..315011,315434..316114,316258..316448, 316932..317179,317572..317717,317969..318145, 318490..318678) /locus_tag="TCM_042388" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ubiquitin-specific protease 24 isoform 1" /protein_id="EOY17595.1" /db_xref="Phytozome:POPTR_0003s20160.1" /db_xref="TAIR:AT4G30890.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGG1" /translation="MTDSKVFLFGSFSEDETRSLLSKRSAGNAEKPVQKKELQSGSLN FAAGGSLGGANGDLSNKPSSTNRPVGFLSSTSPIADRKSIKSARDHTSTTLQTPKENG TTKSTNESSSLSNGIKQLNVKSTDVTSLHLSQNDCGSLNNFQSLKFHVLESESMEGRD QNGMIDISLACTVDGDIPKAAKEPITVAKNLLSRGLINTGNLCFLNATLQALLSCSPF VQLLQRLRLRNIPKVGFPTLTAFAEFVSDFDVPSSNPNVKKKDTTVLEIGRPFSPAMF EAVLKSFTPDVPNSISGRPRQEDAQEFLSFIMDQMHNELIKLDGQPSSSIGVRSSLVS SVEDDEWETVGPKNKSAITRTQSFLPSELSDIFGGQLRSVVKARGNKASATVQPFLLL HLDIHPEAVLTIEDALHLFSAPEYLEGYRASTAGKAGVVTARKSVKIQTLSKIMILHL MRFSYGSQGSTKLHKPVRFPLELVLGRELLVSPSTEGRKYELVATITHHGREPSKGHY TADARYLNGQWLRFDDASVTAIGTSKVLHDQAYVLFYKQA" mobile_element 319879..319948 /note="source:CACAO_Mariner_E25_scaffold_1 3182 3252" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(324276..326060) /locus_tag="TCM_042389" /note="dbxref CacaoGD:Thecc1EG042389" mRNA complement(324276..326060) /locus_tag="TCM_042389" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30131.m007249" /inference="similar to AA sequence:Phytozome:POPTR_0003s20150.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg127t1" CDS complement(324785..326005) /locus_tag="TCM_042389" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY17600.1" /db_xref="Phytozome:POPTR_0003s20150.1" /db_xref="TAIR:AT3G51930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SV11" /translation="MAPPMQEAVLSTPLLSSATASSSSISSTSSEADDSPPASHRFEL LDVTKYEFPSKTFSGSQTYKSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPD LRQFTKFGQGDGSVKALVTVSNKVFTAHQDSRIRVWKVSRSSENVFKLVDTLPTTKDY LGKFMKQSNYVRTRRHHKRLWIEHADSISCLTVYDGLIYSGSWDKTLKVWRISDLKCL ESIKAHDDAINSLVACKGTVYSASADGKIKAWSWGKEGKTSHSLKGILEGHKDVSLNS VVVSEDGKWVYGGGSDGFVMGWEGQGNGDFVSWKLVSETKAHHMAVLCMCLMGEFLCS GSADKSIGIWKREAYGKLCTVGVINGHEGPVKCLQASPCNVGSGFLLYSGGLDKSIRV WWVPKNSAKREDQQ" gene 328294..335199 /locus_tag="TCM_042390" /note="dbxref CacaoGD:Thecc1EG042390" mRNA join(328294..328612,328771..328859,328969..329047, 329137..329223,329322..329447,329595..329826, 330048..330180,330279..330379,330832..330965, 331066..331123,332019..332177,333009..333088, 333368..333605,334033..334119,334525..335199) /locus_tag="TCM_042390" /product="Restriction endonuclease, type II-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000850001" /inference="similar to AA sequence:Phytozome:POPTR_0003s20120.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg171t2; alternateUTRof:Thecc1EG042390t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc493t12; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc147t15" mRNA join(328301..328612,328771..328859,328969..329047, 329137..329223,329322..329447,329595..329826, 330048..330180,330279..330379,330832..330965, 331066..331123,332019..332177,333009..333088, 333368..333605,334033..334119,334525..335026, 335116..335154) /locus_tag="TCM_042390" /product="Restriction endonuclease, type II-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000850001" /inference="similar to AA sequence:Phytozome:POPTR_0003s20120.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc493t12; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc493t12" CDS join(328419..328612,328771..328859,328969..329047, 329137..329223,329322..329447,329595..329826, 330048..330180,330279..330379,330832..330965, 331066..331123,332019..332177,333009..333088, 333368..333605,334033..334119,334525..334629) /locus_tag="TCM_042390" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Restriction endonuclease, type II-like superfamily protein, putative isoform 1" /protein_id="EOY17601.1" /db_xref="Phytozome:POPTR_0003s20120.1" /db_xref="TAIR:AT4G30870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWK3" /translation="MEKSRRVMCPENEGLANYLLQKRQELAEKPQGIKENTDMTLSKA YNNICKAQHPIKTLKDLNDIKGVGKWILVLMRSYFDNGSGSSEPEDVTTKGKKTKGNR RYLPQKNSVAYALLITLYRETADGNEFMHKQDLIDAAEASGLSRAPIAPDKGKGRPSQ FGSSSRDWYSGWSCMSILIKKGFVAKSSCPAKYMLTPEGKEAARECLMKSKMEDPLEN LVNVERFSQPETQNACIEEFVHSDSVREEANATAAFRQKKFIDVPLDSLEKCTRMGYS EGQVHCAFAEVSETSKNKEISSLWPAVLCRLREDQVYGQEDRVGFQSTRMDLTDDGGD VPNVFTLRACSSSRPSSEGLDANINILSIAPLSFGERFEDVYEVILILDDREHFTSQG ARSKKMIEKICSEFKIKINVRRLPIGDGIWIARHKHLFKEYVLDFIVERKKVDDLRFS IRDNRYRDQKLRLLRSGLKKLIYLVEGDPNSSEAAESIKTACFTTEILEGFDVQRTSG LHDTLRKYAYLTRAITQYYKLHLPEDQSRCTGVCPSFDEFILRCQELDKMTVSDVFAI QLMQVPQVTEEVAIAVVDLYPTLVSLAHAYSLLEGDVCAQEEMLRKQSNNVVTSAASK NIFRFVWAD" CDS join(328419..328612,328771..328859,328969..329047, 329137..329223,329322..329447,329595..329826, 330048..330180,330279..330379,330832..330965, 331066..331123,332019..332177,333009..333088, 333368..333605,334033..334119,334525..334629) /locus_tag="TCM_042390" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Restriction endonuclease, type II-like superfamily protein, putative isoform 1" /protein_id="EOY17602.1" /db_xref="Phytozome:POPTR_0003s20120.1" /db_xref="TAIR:AT4G30870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWK3" /translation="MEKSRRVMCPENEGLANYLLQKRQELAEKPQGIKENTDMTLSKA YNNICKAQHPIKTLKDLNDIKGVGKWILVLMRSYFDNGSGSSEPEDVTTKGKKTKGNR RYLPQKNSVAYALLITLYRETADGNEFMHKQDLIDAAEASGLSRAPIAPDKGKGRPSQ FGSSSRDWYSGWSCMSILIKKGFVAKSSCPAKYMLTPEGKEAARECLMKSKMEDPLEN LVNVERFSQPETQNACIEEFVHSDSVREEANATAAFRQKKFIDVPLDSLEKCTRMGYS EGQVHCAFAEVSETSKNKEISSLWPAVLCRLREDQVYGQEDRVGFQSTRMDLTDDGGD VPNVFTLRACSSSRPSSEGLDANINILSIAPLSFGERFEDVYEVILILDDREHFTSQG ARSKKMIEKICSEFKIKINVRRLPIGDGIWIARHKHLFKEYVLDFIVERKKVDDLRFS IRDNRYRDQKLRLLRSGLKKLIYLVEGDPNSSEAAESIKTACFTTEILEGFDVQRTSG LHDTLRKYAYLTRAITQYYKLHLPEDQSRCTGVCPSFDEFILRCQELDKMTVSDVFAI QLMQVPQVTEEVAIAVVDLYPTLVSLAHAYSLLEGDVCAQEEMLRKQSNNVVTSAASK NIFRFVWAD" mRNA join(329247..329447,329595..329826,330048..330180, 330279..330379,330832..330965,331066..331123, 332019..332177,333009..333088,333368..333605, 334033..334119,334525..335026,335116..335154) /locus_tag="TCM_042390" /product="Crossover junction endonuclease MUS81 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000850001" /inference="similar to AA sequence:Phytozome:POPTR_0003s20120.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc493t5; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc493t12; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc147t15" CDS join(329395..329447,329595..329826,330048..330180, 330279..330379,330832..330965,331066..331123, 332019..332177,333009..333088,333368..333605, 334033..334119,334525..334629) /locus_tag="TCM_042390" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Crossover junction endonuclease MUS81 isoform 3" /protein_id="EOY17603.1" /db_xref="Phytozome:POPTR_0003s20120.1" /db_xref="TAIR:AT4G30870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWK3" /translation="MSILIKKGFVAKSSCPAKYMLTPEGKEAARECLMKSKMEDPLEN LVNVERFSQPETQNACIEEFVHSDSVREEANATAAFRQKKFIDVPLDSLEKCTRMGYS EGQVHCAFAEVSETSKNKEISSLWPAVLCRLREDQVYGQEDRVGFQSTRMDLTDDGGD VPNVFTLRACSSSRPSSEGLDANINILSIAPLSFGERFEDVYEVILILDDREHFTSQG ARSKKMIEKICSEFKIKINVRRLPIGDGIWIARHKHLFKEYVLDFIVERKKVDDLRFS IRDNRYRDQKLRLLRSGLKKLIYLVEGDPNSSEAAESIKTACFTTEILEGFDVQRTSG LHDTLRKYAYLTRAITQYYKLHLPEDQSRCTGVCPSFDEFILRCQELDKMTVSDVFAI QLMQVPQVTEEVAIAVVDLYPTLVSLAHAYSLLEGDVCAQEEMLRKQSNNVVTSAASK NIFRFVWAD" gene complement(333711..348133) /locus_tag="TCM_042391" /note="dbxref CacaoGD:Thecc1EG042391" mRNA complement(join(333711..335028,335125..335199, 335282..335470,335563..335650,335740..335807, 335896..336082,336313..336500,336787..336919, 337078..337195,337298..337406,337502..337768, 339245..339332,339447..339633,340554..340611, 340700..340780,340871..341059,341146..341224, 341316..341383,341484..341670,341764..341951, 342286..342418,342561..342678,342781..342889, 343260..343532,343714..343801,343888..344307, 347836..348133)) /locus_tag="TCM_042391" /product="Purple acid phosphatase 27 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000848001" /inference="similar to AA sequence:Phytozome:GSVIVT01000848001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:PASA:2:TSA:puevd3b040914t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg173t3" mRNA complement(join(334839..335028,335119..335199, 335282..335470,335563..335650,335740..335807, 335896..336082,336313..336500,336787..336919, 337078..337195,337298..337406,337502..337768, 339245..339332,339447..339633,340554..340611, 340700..340780,340871..341059,341146..341224, 341316..341383,341484..341670,341764..341951, 342286..342418,342561..342678,342781..342889, 343260..343532,343714..343801,343888..344307, 347836..348133)) /locus_tag="TCM_042391" /product="Purple acid phosphatase 27 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000848001" /inference="similar to AA sequence:Phytozome:GSVIVT01000848001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg173t3" CDS complement(join(334963..335028,335125..335199, 335282..335470,335563..335650,335740..335807, 335896..336082,336313..336500,336787..336919, 337078..337195,337298..337406,337502..337768, 339245..339332,339447..339633,340554..340611, 340700..340780,340871..341059,341146..341224, 341316..341383,341484..341670,341764..341951, 342286..342418,342561..342678,342781..342889, 343260..343532,343714..343801,343888..344307, 347836..347852)) /locus_tag="TCM_042391" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Purple acid phosphatase 27 isoform 2" /protein_id="EOY17605.1" /db_xref="Phytozome:GSVIVT01000848001" /db_xref="TAIR:AT5G50400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GX85" /translation="MVWSVGRKLRKTRRQDSTTLLICLPQHHNFHHFLPMEEPVTYRV FNKFSFLLLISFLAFPSSSSFKLHPLVANSTFLHRNYTAVSDFRVLNRRTLIECPDPN PYLQINVISDADVSDDEFVAVNVSGVMVPSEADWVAMISPSYSNVTTCLESEAYYIQT GDTSTLPLLCHYPVKAKYVSSDPDYLSCKKQECQKYGNDGKCEITTCSGSITFHVVNI RTDIEFVFFTGGFGTPCILTRTDVPLKFSNPNSPLYGHLSSMDSTGTSMRLTWVSGDK EPQQVKYGDGKSQTSDVTTFSADDMCSSVVVPSPAKDFGWHDPGYIHTAVMTGLQPSS TCNYKYGSDSVGWSDQIQFRTPPAGGSDELKFLVFGDMGKAPLDDSAEHYIQPGSISV IKGMIEEVENGNVDSIFHIGDISYATGFLVEWEFFLHLITPLASQVTYMTAIGNHERD YADSGSWYPGPDSGGECGVAYETYFPMPTPAKDKPWYSIEQGSVHFTVISTEHDWTEQ SEQYEWMKNDMASVDRSKTPWLIFTGHRPMYSSLGADDKFLKIVEPVLLDNKVDLALF GHVHNYERTCSVYNSECLAMPTKDKNGIDTYDNSNYTAPVQAVVGMAGFSLDKFPDDA ASWSLSRVSEFGYVRAHATKDELKLEFVNSDTKDIEDSFRITKNQISDFRVLNRRTLS QCLNPNPFLQIHVSKNSNLSNEEFVTVTVSGVLLPSPEDWIAMISPSHSNVGACLQSE AFYLQTGDISKLPLLCHYPVKAKFVSSDPDYLSCKKKECMKHSKGKCKVTTCSGFVAF HVINIRTDIEFVFFTGGFHKPCVLKRTIPLKFSNPNAPLYGHLSSIDSTGTSMRLTWI SGDKEPQQVKYGNGKSQTSQVATFSQDDMCSSILIPSPAKDFGWHDPGYIHTAVMTGL QPSSTSYYKYGSDAVGWSDRIEFRTPPAGGSDELKFLVYGDMGKAPLDASAEHFTQPG SLSVVKAMVEELKNGNVDSIFHIGDISYATGFLVEWEFFLHLLSPLASKVSYMTAIGN HERDYADSGSYYPGPDSGGECGVAYETYFPMPTAAKDKPWYAVEQGSVHFTVISTEHD WTENSEQYNWMKKDMASVDRSKTPWLIFAGHRPMYSSYLVKSTDDKFRDVVEPVLLAN KVDLALFGHVHNYERTCSIYKSQCLAMPRKDENGIDTYDNSNYKAPVQAVVGMAGFSL DKFSLFVTGWSLSRISEFGYVRAHATKDELMFVNSNTRKVQDSFRITKKQNS" CDS complement(join(334963..335028,335119..335199, 335282..335470,335563..335650,335740..335807, 335896..336082,336313..336500,336787..336919, 337078..337195,337298..337406,337502..337768, 339245..339332,339447..339633,340554..340611, 340700..340780,340871..341059,341146..341224, 341316..341383,341484..341670,341764..341951, 342286..342418,342561..342678,342781..342889, 343260..343532,343714..343801,343888..344307, 347836..347852)) /locus_tag="TCM_042391" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Purple acid phosphatase 27 isoform 1" /protein_id="EOY17604.1" /db_xref="Phytozome:GSVIVT01000848001" /db_xref="TAIR:AT5G50400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GX85" /translation="MVWSVGRKLRKTRRQDSTTLLICLPQHHNFHHFLPMEEPVTYRV FNKFSFLLLISFLAFPSSSSFKLHPLVANSTFLHRNYTAVSDFRVLNRRTLIECPDPN PYLQINVISDADVSDDEFVAVNVSGVMVPSEADWVAMISPSYSNVTTCLESEAYYIQT GDTSTLPLLCHYPVKAKYVSSDPDYLSCKKQECQKYGNDGKCEITTCSGSITFHVVNI RTDIEFVFFTGGFGTPCILTRTDVPLKFSNPNSPLYGHLSSMDSTGTSMRLTWVSGDK EPQQVKYGDGKSQTSDVTTFSADDMCSSVVVPSPAKDFGWHDPGYIHTAVMTGLQPSS TCNYKYGSDSVGWSDQIQFRTPPAGGSDELKFLVFGDMGKAPLDDSAEHYIQPGSISV IKGMIEEVENGNVDSIFHIGDISYATGFLVEWEFFLHLITPLASQVTYMTAIGNHERD YADSGSWYPGPDSGGECGVAYETYFPMPTPAKDKPWYSIEQGSVHFTVISTEHDWTEQ SEQYEWMKNDMASVDRSKTPWLIFTGHRPMYSSLGADDKFLKIVEPVLLDNKVDLALF GHVHNYERTCSVYNSECLAMPTKDKNGIDTYDNSNYTAPVQAVVGMAGFSLDKFPDDA ASWSLSRVSEFGYVRAHATKDELKLEFVNSDTKDIEDSFRITKNQISDFRVLNRRTLS QCLNPNPFLQIHVSKNSNLSNEEFVTVTVSGVLLPSPEDWIAMISPSHSNVGACLQSE AFYLQTGDISKLPLLCHYPVKAKFVSSDPDYLSCKKKECMKHSKGKCKVTTCSGFVAF HVINIRTDIEFVFFTGGFHKPCVLKRTIPLKFSNPNAPLYGHLSSIDSTGTSMRLTWI SGDKEPQQVKYGNGKSQTSQVATFSQDDMCSSILIPSPAKDFGWHDPGYIHTAVMTGL QPSSTSYYKYGSDAVGWSDRIEFRTPPAGGSDELKFLVYGDMGKAPLDASAEHFTQPG SLSVVKAMVEELKNGNVDSIFHIGDISYATGFLVEWEFFLHLLSPLASKVSYMTAIGN HERDYADSGSYYPGPDSGGECGVAYETYFPMPTAAKDKPWYAVEQGSVHFTVISTEHD WTENSEQYNWMKKDMASVDRSKTPWLIFAGHRPMYSSYLVKSTDDKFRDVVEPVLLAN KVDLALFGHVHNYERTCSIYKSQCLAMPRKDENGIDTYDNSNYKAPVQAVVGMAGFSL DKFSLFVTGWSLSRISEFGYVRAHATKDELMVEFVNSNTRKVQDSFRITKKQNS" mobile_element 336521..336573 /note="source:CACAO_M_S_E64308_F143_scaffold_5 1256 1307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(346366..346576) /note="source:CACAO_on_E33_A_scaffold_3 12917 13151" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 348230..352154 /locus_tag="TCM_042392" /note="dbxref CacaoGD:Thecc1EG042392" mRNA join(348230..348673,349255..351098,351961..352154) /locus_tag="TCM_042392" /product="Scarecrow-like protein 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040833t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06090.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05407t00001" mRNA join(348230..348673,349288..351098,351961..352154) /locus_tag="TCM_042392" /product="Scarecrow-like protein 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040833t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06090.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b040915t1a2; inference alignment:Newbler:10:TSA:cgbaB_g05407t00001" CDS 349281..350732 /locus_tag="TCM_042392" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040833t1" /codon_start=1 /product="Scarecrow-like protein 3 isoform 1" /protein_id="EOY17606.1" /db_xref="Phytozome:POPTR_0001s06090.1" /db_xref="TAIR:AT1G50420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LPR8" /translation="MAGMIQEGPSSVTSPPLPFLPWMSLSPGLGSPFPWLRELKSEER GLYLIHLLVQCANHVAAGSLENANIGLEQISHLASPDGDTMQRIAAYFTEALADRMLK AWPGLHKALNSTKISSVSEEILVQKLFFELFPFLKLAYVITNQAIVEAMEGEKMVHII DLNSSEPAQWINLFQTFSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQ FNPIVCKLENLDLESLRVKTGEALAVSSVLQLHSLLAPDDEMLRRNINSPSVSKNLNS SRPHRVLQVNQRTLGEWLEKEPVHIYSPSSSDLASPSPSPSSPLSLAPAPKLGSFLTA LRALSPKLIVVTEQESNHNGPTLMERVMEALNFYAALFDCLESTLSRAPLERQKVEKM LFGEEIKNIIACEGLERKERHEKLEKWILRLELAGFGRVPLSYHGMLQAGRLLQTNNY DGYKIKEENGCLVMCWQERPLYSMSAWGFRRYD" CDS 349290..350732 /locus_tag="TCM_042392" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040833t1" /codon_start=1 /product="Scarecrow-like protein 3 isoform 2" /protein_id="EOY17607.1" /db_xref="Phytozome:POPTR_0001s06090.1" /db_xref="TAIR:AT1G50420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LPR8" /translation="MIQEGPSSVTSPPLPFLPWMSLSPGLGSPFPWLRELKSEERGLY LIHLLVQCANHVAAGSLENANIGLEQISHLASPDGDTMQRIAAYFTEALADRMLKAWP GLHKALNSTKISSVSEEILVQKLFFELFPFLKLAYVITNQAIVEAMEGEKMVHIIDLN SSEPAQWINLFQTFSARPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKLDIPFQFNP IVCKLENLDLESLRVKTGEALAVSSVLQLHSLLAPDDEMLRRNINSPSVSKNLNSSRP HRVLQVNQRTLGEWLEKEPVHIYSPSSSDLASPSPSPSSPLSLAPAPKLGSFLTALRA LSPKLIVVTEQESNHNGPTLMERVMEALNFYAALFDCLESTLSRAPLERQKVEKMLFG EEIKNIIACEGLERKERHEKLEKWILRLELAGFGRVPLSYHGMLQAGRLLQTNNYDGY KIKEENGCLVMCWQERPLYSMSAWGFRRYD" gene complement(351973..352980) /locus_tag="TCM_042393" /note="dbxref CacaoGD:Thecc1EG042393" mRNA complement(351973..352980) /locus_tag="TCM_042393" /product="Disease resistance-responsive (dirigent-like protein) family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042394t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06100.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg158t1" CDS complement(352409..352858) /locus_tag="TCM_042393" /note="paralog of Thecc1EG042394t1" /codon_start=1 /product="Disease resistance-responsive (dirigent-like protein) family protein" /protein_id="EOY17608.1" /db_xref="Phytozome:POPTR_0001s06100.1" /db_xref="TAIR:AT1G22900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6SV95" /translation="MASFATQTLFILFFTLFSTFFITINGEFSSQSPITSTNRMAKMT RLHFYFHDIVDGKNPTAMKIIRPPNNSVGSFGTTFMVDDPLTESPEPNSKLVGRAQGI YALASQHDAGLLMVMNFAFSEGIYNGSALSILECSFSHGQGNANSRR" gene complement(354216..355073) /locus_tag="TCM_042394" /note="dbxref CacaoGD:Thecc1EG042394" mRNA complement(354216..355073) /locus_tag="TCM_042394" /product="Disease resistance-responsive family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024985t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06120.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg158t3" CDS complement(354467..355033) /locus_tag="TCM_042394" /note="paralog of Thecc1EG024985t1" /codon_start=1 /product="Disease resistance-responsive family protein" /protein_id="EOY17609.1" /db_xref="Phytozome:POPTR_0001s06120.1" /db_xref="TAIR:AT1G65870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9Z8" /translation="MPTFSICLLFTFNFIIFSNFCNTAYGIFCEETTEAITIKRVEKT SHLHFYFHDVISGKQPSVVKIAGPPNSTGYGFGATMIMDDALTEGPEISSKLVGRAQG MYAIAAQEELSLLMVMNFAFIEGTYNGSSISILGRNPVLNDIREMPIVGGGGVFRLAR GYALADTIRLDYKTGDATVEYHVYVSHY" mobile_element 355388..355481 /note="source:scaffold_6_CACTA_0706 1113 1215" /mobile_element_type="transposon:TIR/CACTA" gene 356157..358802 /locus_tag="TCM_042395" /note="dbxref CacaoGD:Thecc1EG042395" mRNA join(356157..356442,356693..356781,356870..356991, 357085..357206,357317..357638,358499..358802) /locus_tag="TCM_042395" /product="Essential protein Yae1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20050.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20050.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc516t3" mRNA join(356329..356454,356693..356781,356870..356991, 357085..357206,357317..357853) /locus_tag="TCM_042395" /product="Essential protein Yae1, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene00983" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20050.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20050.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11818t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3771t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc516t3" mRNA join(356347..356781,356870..356991,357085..357206, 357317..357961) /locus_tag="TCM_042395" /product="Essential protein Yae1, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20050.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20050.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:PASA:2:TSA:puevd3b040918t1a3; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc516t3" CDS join(356450..356454,356693..356781,356870..356991, 357085..357206,357317..357647) /locus_tag="TCM_042395" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Essential protein Yae1, putative isoform 2" /protein_id="EOY17611.1" /db_xref="Phytozome:POPTR_0003s20050.1" /db_xref="TAIR:AT1G34570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWL1" /translation="MRDMDNSLAEELYSESLQLSKLHLGHSSTANGFSEANVQAGDGS LWGDSDEELDKLSDLDREWQRRHDQFHTIGYRDGLIAGKEASAQEGFNIGFKQSVFAG CNWGLARGVTSALACLPDTLREKLIETQEKRDKFRGLCDSVNSLSTIDALKLFHDDIM SKKVVEQSEPVEAGVSAGGLQEQSSTSGSLGKYTAELQSLLHESPKIKIRFFHQEVST PDVC" CDS join(356697..356781,356870..356991,357085..357206, 357317..357638,358499..358753) /locus_tag="TCM_042395" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Essential protein Yae1, putative isoform 1" /protein_id="EOY17610.1" /db_xref="Phytozome:POPTR_0003s20050.1" /db_xref="TAIR:AT1G34570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWL1" /translation="MDNSLAEELYSESLQLSKLHLGHSSTANGFSEANVQAGDGSLWG DSDEELDKLSDLDREWQRRHDQFHTIGYRDGLIAGKEASAQEGFNIGFKQSVFAGCNW GLARGVTSALACLPDTLREKLIETQEKRDKFRGLCDSVNSLSTIDALKLFHDDIMSKK VVEQSEPVEAGVSAGGLQEQSSTSGSLGKYTAELQSLLHESPKIKIRFFHQEVSTPDI NSLHVSSCCVYSSQQLTTCSLLYWNCGLKAFAFACYDDDDDDDDDDDDDDDAFYPWTD CSYNLSKLLSSDHILGSDKKVELVC" CDS join(356697..356781,356870..356991,357085..357206, 357317..357647) /locus_tag="TCM_042395" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Essential protein Yae1, putative isoform 3" /protein_id="EOY17612.1" /db_xref="Phytozome:POPTR_0003s20050.1" /db_xref="TAIR:AT1G34570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWL1" /translation="MDNSLAEELYSESLQLSKLHLGHSSTANGFSEANVQAGDGSLWG DSDEELDKLSDLDREWQRRHDQFHTIGYRDGLIAGKEASAQEGFNIGFKQSVFAGCNW GLARGVTSALACLPDTLREKLIETQEKRDKFRGLCDSVNSLSTIDALKLFHDDIMSKK VVEQSEPVEAGVSAGGLQEQSSTSGSLGKYTAELQSLLHESPKIKIRFFHQEVSTPDV C" gene complement(358067..363115) /locus_tag="TCM_042397" /note="dbxref CacaoGD:Thecc1EG042397" mRNA complement(join(358067..362155,363077..363115)) /locus_tag="TCM_042397" /product="Plant calmodulin-binding protein-related, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06150.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00926t00001" mRNA complement(join(358200..358606,358646..358717, 358870..362090)) /locus_tag="TCM_042397" /product="Plant calmodulin-binding protein-related, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06150.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06150.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7987t9; alternateUTRof:Thecc1EG042397t1; inference alignment:Newbler:10:TSA:cgbaP2_g00926t00001" mRNA complement(join(358200..358615,358646..358746, 358870..362090)) /locus_tag="TCM_042397" /product="Plant calmodulin-binding protein-related, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06150.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06150.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7987t6; alternateUTRof:Thecc1EG042397t1; inference alignment:Newbler:10:TSA:cgbaP2_g00926t00001" mRNA complement(join(358254..358619,358656..358717, 358870..361843)) /locus_tag="TCM_042397" /product="Plant calmodulin-binding protein-related, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06150.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06150.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00926t00001; alternateUTRof:Thecc1EG042397t1; inference alignment:Newbler:10:TSA:cgbaP2_g00926t00001" mobile_element 358595..358655 /note="source:CACAO_M_E45502_F322_scaffold_6 1964 2027" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(358608..358658) /note="source:CACAO_M_S_E146340_F96_scaffold_12 8556 8608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(358617..358665) /note="source:CACAO_PIF_E115_scaffold_9 1343 1390" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS complement(358884..361793) /locus_tag="TCM_042397" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Plant calmodulin-binding protein-related, putative isoform 1" /protein_id="EOY17613.1" /db_xref="Phytozome:POPTR_0001s06150.1" /db_xref="TAIR:AT2G38800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGF0" /translation="MVQRKVPNKLGIQADHTKPEKRLGSLKPSSCQHQDGKNKGTDLK KKMKKSRSIKLSDIEGLRSSPVRKTIAQPGKPPPLNVPAAAAATPQKKSVIKAVDGSP NYMKSTSSSEAKKEVSQVSSRNTQTGSDSKNLRRRSSTGSKSSSGSCNKPARTLTRTS SLKMVRTLTKSPSFKPVRASSKKCSRVALCADMDMQRATCSSTLKDSKFPAYLILNPG GTESEGTSIIKVCPYTYCSLNGHHHTPLPPLKCFLKARRRSMKTQRSMKMEALSPRRL KPSADGTEEFNAAQVAFGNDPASNGVDLDNSPRSPLMQEGGMDFFIEIYAKSKGNDAE ADVGTTQMNAKRMDDSGCGNETAPEHNTEKPVSESLYEGSPHAEIDFDENLERCSETF SEVNTKETLYEELKHDDVDEDFRGILVKEKSLPWNFNDGDEQECLATIDIDHTMFEVI DMEWEECQFSASEPDDEALCSMETDYKSDPNTGDSSERDRNNLHDELVISLDEKDSNI TEEILADGAEQQDFEEDTARIDTCSQVSETLCYDQVSSAEEMFEVLVTMEEEEKKENA EVDLTGIVATPSATEELHEGGKEKILENGFPGTVNEASEADPRLEVPENSCTIDVKEE ALESTEQFQLRSFDKLEQDEASEDYNVTQETGDSEANQTVTVSDFSPEKELPSGEAGD GMEAGKIADAELLIGIQISDSSHVLSGADEDDEEIGDIQNNQLCEVNNAIDESFSTQD TVDESLFAESQDHPSDSQHENTNVVDGKSILEEDQDEAKFKVPTSMESEEQNSSRMHK TSLAESSEVGKTDLDSASTGLEAETFPTTSDKNGHNPRNRFSFTRSNAKEEEPDNHNN RKWTVGRKRHEENYEESRKFNPREPNFLPVVPEPDAEKVDLRHQMMDERKNAEEWMLD HALQQAVTKLAPARKRKVALLVEAFETVLPITKCESRLRHTSTGFGHGRPIQACN" CDS complement(358884..361793) /locus_tag="TCM_042397" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Plant calmodulin-binding protein-related, putative isoform 1" /protein_id="EOY17614.1" /db_xref="Phytozome:POPTR_0001s06150.1" /db_xref="TAIR:AT2G38800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGF0" /translation="MVQRKVPNKLGIQADHTKPEKRLGSLKPSSCQHQDGKNKGTDLK KKMKKSRSIKLSDIEGLRSSPVRKTIAQPGKPPPLNVPAAAAATPQKKSVIKAVDGSP NYMKSTSSSEAKKEVSQVSSRNTQTGSDSKNLRRRSSTGSKSSSGSCNKPARTLTRTS SLKMVRTLTKSPSFKPVRASSKKCSRVALCADMDMQRATCSSTLKDSKFPAYLILNPG GTESEGTSIIKVCPYTYCSLNGHHHTPLPPLKCFLKARRRSMKTQRSMKMEALSPRRL KPSADGTEEFNAAQVAFGNDPASNGVDLDNSPRSPLMQEGGMDFFIEIYAKSKGNDAE ADVGTTQMNAKRMDDSGCGNETAPEHNTEKPVSESLYEGSPHAEIDFDENLERCSETF SEVNTKETLYEELKHDDVDEDFRGILVKEKSLPWNFNDGDEQECLATIDIDHTMFEVI DMEWEECQFSASEPDDEALCSMETDYKSDPNTGDSSERDRNNLHDELVISLDEKDSNI TEEILADGAEQQDFEEDTARIDTCSQVSETLCYDQVSSAEEMFEVLVTMEEEEKKENA EVDLTGIVATPSATEELHEGGKEKILENGFPGTVNEASEADPRLEVPENSCTIDVKEE ALESTEQFQLRSFDKLEQDEASEDYNVTQETGDSEANQTVTVSDFSPEKELPSGEAGD GMEAGKIADAELLIGIQISDSSHVLSGADEDDEEIGDIQNNQLCEVNNAIDESFSTQD TVDESLFAESQDHPSDSQHENTNVVDGKSILEEDQDEAKFKVPTSMESEEQNSSRMHK TSLAESSEVGKTDLDSASTGLEAETFPTTSDKNGHNPRNRFSFTRSNAKEEEPDNHNN RKWTVGRKRHEENYEESRKFNPREPNFLPVVPEPDAEKVDLRHQMMDERKNAEEWMLD HALQQAVTKLAPARKRKVALLVEAFETVLPITKCESRLRHTSTGFGHGRPIQACN" CDS complement(358884..361793) /locus_tag="TCM_042397" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Plant calmodulin-binding protein-related, putative isoform 1" /protein_id="EOY17615.1" /db_xref="Phytozome:POPTR_0001s06150.1" /db_xref="TAIR:AT2G38800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGF0" /translation="MVQRKVPNKLGIQADHTKPEKRLGSLKPSSCQHQDGKNKGTDLK KKMKKSRSIKLSDIEGLRSSPVRKTIAQPGKPPPLNVPAAAAATPQKKSVIKAVDGSP NYMKSTSSSEAKKEVSQVSSRNTQTGSDSKNLRRRSSTGSKSSSGSCNKPARTLTRTS SLKMVRTLTKSPSFKPVRASSKKCSRVALCADMDMQRATCSSTLKDSKFPAYLILNPG GTESEGTSIIKVCPYTYCSLNGHHHTPLPPLKCFLKARRRSMKTQRSMKMEALSPRRL KPSADGTEEFNAAQVAFGNDPASNGVDLDNSPRSPLMQEGGMDFFIEIYAKSKGNDAE ADVGTTQMNAKRMDDSGCGNETAPEHNTEKPVSESLYEGSPHAEIDFDENLERCSETF SEVNTKETLYEELKHDDVDEDFRGILVKEKSLPWNFNDGDEQECLATIDIDHTMFEVI DMEWEECQFSASEPDDEALCSMETDYKSDPNTGDSSERDRNNLHDELVISLDEKDSNI TEEILADGAEQQDFEEDTARIDTCSQVSETLCYDQVSSAEEMFEVLVTMEEEEKKENA EVDLTGIVATPSATEELHEGGKEKILENGFPGTVNEASEADPRLEVPENSCTIDVKEE ALESTEQFQLRSFDKLEQDEASEDYNVTQETGDSEANQTVTVSDFSPEKELPSGEAGD GMEAGKIADAELLIGIQISDSSHVLSGADEDDEEIGDIQNNQLCEVNNAIDESFSTQD TVDESLFAESQDHPSDSQHENTNVVDGKSILEEDQDEAKFKVPTSMESEEQNSSRMHK TSLAESSEVGKTDLDSASTGLEAETFPTTSDKNGHNPRNRFSFTRSNAKEEEPDNHNN RKWTVGRKRHEENYEESRKFNPREPNFLPVVPEPDAEKVDLRHQMMDERKNAEEWMLD HALQQAVTKLAPARKRKVALLVEAFETVLPITKCESRLRHTSTGFGHGRPIQACN" CDS complement(358884..361793) /locus_tag="TCM_042397" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Plant calmodulin-binding protein-related, putative isoform 1" /protein_id="EOY17616.1" /db_xref="Phytozome:POPTR_0001s06150.1" /db_xref="TAIR:AT2G38800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGF0" /translation="MVQRKVPNKLGIQADHTKPEKRLGSLKPSSCQHQDGKNKGTDLK KKMKKSRSIKLSDIEGLRSSPVRKTIAQPGKPPPLNVPAAAAATPQKKSVIKAVDGSP NYMKSTSSSEAKKEVSQVSSRNTQTGSDSKNLRRRSSTGSKSSSGSCNKPARTLTRTS SLKMVRTLTKSPSFKPVRASSKKCSRVALCADMDMQRATCSSTLKDSKFPAYLILNPG GTESEGTSIIKVCPYTYCSLNGHHHTPLPPLKCFLKARRRSMKTQRSMKMEALSPRRL KPSADGTEEFNAAQVAFGNDPASNGVDLDNSPRSPLMQEGGMDFFIEIYAKSKGNDAE ADVGTTQMNAKRMDDSGCGNETAPEHNTEKPVSESLYEGSPHAEIDFDENLERCSETF SEVNTKETLYEELKHDDVDEDFRGILVKEKSLPWNFNDGDEQECLATIDIDHTMFEVI DMEWEECQFSASEPDDEALCSMETDYKSDPNTGDSSERDRNNLHDELVISLDEKDSNI TEEILADGAEQQDFEEDTARIDTCSQVSETLCYDQVSSAEEMFEVLVTMEEEEKKENA EVDLTGIVATPSATEELHEGGKEKILENGFPGTVNEASEADPRLEVPENSCTIDVKEE ALESTEQFQLRSFDKLEQDEASEDYNVTQETGDSEANQTVTVSDFSPEKELPSGEAGD GMEAGKIADAELLIGIQISDSSHVLSGADEDDEEIGDIQNNQLCEVNNAIDESFSTQD TVDESLFAESQDHPSDSQHENTNVVDGKSILEEDQDEAKFKVPTSMESEEQNSSRMHK TSLAESSEVGKTDLDSASTGLEAETFPTTSDKNGHNPRNRFSFTRSNAKEEEPDNHNN RKWTVGRKRHEENYEESRKFNPREPNFLPVVPEPDAEKVDLRHQMMDERKNAEEWMLD HALQQAVTKLAPARKRKVALLVEAFETVLPITKCESRLRHTSTGFGHGRPIQACN" gene complement(365711..374600) /locus_tag="TCM_042398" /note="dbxref CacaoGD:Thecc1EG042398" mRNA complement(join(365711..366387,366741..366834, 367039..367093,367449..367541,367692..367844, 368171..368511,368944..369415,369629..369702, 370640..370718,370955..371937,374484..374600)) /locus_tag="TCM_042398" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30131.m007230" /inference="similar to AA sequence:ricco:30131.m007230" /note="transcript variant 2; alternatively spliced; quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:PASA:2:TSA:puevd3b040920t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg148t2" mRNA complement(join(365711..366387,366741..366834, 367035..367093,367449..367541,367692..367844, 368171..368526,368944..369415,369629..369702, 370640..370718,370955..371937,374484..374600)) /locus_tag="TCM_042398" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007230" /inference="similar to AA sequence:Phytozome:POPTR_0001s06160.1" /note="transcript variant 1; alternatively spliced; quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg148t2" CDS complement(join(366166..366387,366741..366834, 367035..367093,367449..367541,367692..367844, 368171..368526,368944..369415,369629..369702, 370640..370718,370955..371518)) /locus_tag="TCM_042398" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY17617.1" /db_xref="Phytozome:POPTR_0001s06160.1" /db_xref="TAIR:AT2G38780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ITX5" /translation="MKGIMETFFHGLSLGFTIVRSFVLALYTFNSVVPLFVPIVNPPQ PAPNLEILPVPAPMPDHPLKQFSVLPLIPKTKQMIVLEWLFLTITPCDAAEPWQLGFQ DATTLMMQGIIDLHHDIFFFLILILVFVLRIFVRALWHFHYHKNPTAQKIVHGTTIEI LQTIFSSIIPMFIAIPSFALLYSMDEAVISISIQREGVDYGQCSEICGTNHAFKPPFG NRPPFLQVNKIYTQAKASIPSLKVYMNYRLTKSSLTLQRPLSKFISTFMAALQHSWLS TLNTTAFFSSSNRQKNSPFKLSFSQKPNSEETSPESAEGPVDPVKLPFERAKAYKKMK VNPDSKTEPNPGEDSGRDRKKTDGSKEIPASVKVALRKAREYKENTGVLGGVDNASES RIASGIDVLGKNTESGGTSQLGKTAEKKVQKEEKLLISSIDFVGLEFADKKKSRGLPA GLAPVSDPFPEGDLPDVEIIVGDTSKFGEATTSEEKQTTEDSSEIYKPKVSTWGVFPR PGNISKTFGGGRTIRPGEVLESEEDKAAKNERTRQLLTAYKKKIGLNVDPKLRSECEK ALKDGDSLMDSGKLKEALSCYERVMEKMPYQSELHGFAALQWSICQDSLRRPSEARIM YEKLQSHPNAKVSKKARQFTFSFKAMEMMKVTGSNPSLKNTGYQNYFEAFIEDKAYNS LEGAEVTEGALNQALPYVIFLLSPIIAVLFIAVQKGYAN" CDS complement(join(366776..366834,367039..367093, 367449..367541,367692..367844,368171..368511, 368944..369415,369629..369702,370640..370718, 370955..371518)) /locus_tag="TCM_042398" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m007230" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY17618.1" /db_xref="TAIR:AT2G38780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ITX5" /translation="MKGIMETFFHGLSLGFTIVRSFVLALYTFNSVVPLFVPIVNPPQ PAPNLEILPVPAPMPDHPLKQFSVLPLIPKTKQMIVLEWLFLTITPCDAAEPWQLGFQ DATTLMMQGIIDLHHDIFFFLILILVFVLRIFVRALWHFHYHKNPTAQKIVHGTTIEI LQTIFSSIIPMFIAIPSFALLYSMDEAVISISIQREGVDYGQCSEICGTNHAFKPPFG NRPPFLQVNKIYTQAKASIPSLKVYMNYRLTKSSLTLQRPLSKFISTFMAALQHSWLS TLNTTAFFSSSNRQKNSPFKLSFSQKPNSEETSPESAEGPVDPVKLPFERAKAYKKMK VNPDSKTEPNPGEDSGRDRKKTDGSKEIPASVKVALRKAREYKENTGVLGGVDNASES RIASGKNTESGGTSQLGKTAEKKVQKEEKLLISSIDFVGLEFADKKKSRGLPAGLAPV SDPFPEGDLPDVEIIVGDTSKFGEATTSEEKQTTEDSSEIYKPKVSTWGVFPRPGNIS KTFGGGRTIRPGEVLESEEDKAAKNERTRQLLTAYKKKIGLNVDPKLRSECEKALKDG DSLMDSGKLKEALSCYERVMEKMPYQSELHGFAALQWSICQDSLHQVRLGLCMRSSSL IQMPK" mRNA complement(join(366880..367093,367449..367541, 367692..367844,368171..368511,368944..369415, 369629..369702,370640..370718,370955..371937, 374484..374600)) /locus_tag="TCM_042398" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30131.m007230" /inference="similar to AA sequence:ricco:30131.m007230" /note="transcript variant 3; alternatively spliced; quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:PASA:2:TSA:puevd3b040920t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg148t2" CDS complement(join(366998..367093,367449..367541, 367692..367844,368171..368511,368944..369415, 369629..369702,370640..370718,370955..371518)) /locus_tag="TCM_042398" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30131.m007230" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY17619.1" /db_xref="TAIR:AT2G38780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ITX5" /translation="MKGIMETFFHGLSLGFTIVRSFVLALYTFNSVVPLFVPIVNPPQ PAPNLEILPVPAPMPDHPLKQFSVLPLIPKTKQMIVLEWLFLTITPCDAAEPWQLGFQ DATTLMMQGIIDLHHDIFFFLILILVFVLRIFVRALWHFHYHKNPTAQKIVHGTTIEI LQTIFSSIIPMFIAIPSFALLYSMDEAVISISIQREGVDYGQCSEICGTNHAFKPPFG NRPPFLQVNKIYTQAKASIPSLKVYMNYRLTKSSLTLQRPLSKFISTFMAALQHSWLS TLNTTAFFSSSNRQKNSPFKLSFSQKPNSEETSPESAEGPVDPVKLPFERAKAYKKMK VNPDSKTEPNPGEDSGRDRKKTDGSKEIPASVKVALRKAREYKENTGVLGGVDNASES RIASGKNTESGGTSQLGKTAEKKVQKEEKLLISSIDFVGLEFADKKKSRGLPAGLAPV SDPFPEGDLPDVEIIVGDTSKFGEATTSEEKQTTEDSSEIYKPKVSTWGVFPRPGNIS KTFGGGRTIRPGEVLESEEDKAAKNERTRQLLTAYKKKIGLNVDPKLRSECEKALKDG DSLMDSGKLKEALSCYERVMEKMPYQSELHGFAALQWSICQDSLRRYIINYFNLLEH" mobile_element 369810..370348 /note="source:CACAO_on_E169_scaffold_5 1 559" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 371466..372529 /locus_tag="TCM_042399" /note="dbxref CacaoGD:Thecc1EG042399" mRNA join(371466..372104,372318..372529) /locus_tag="TCM_042399" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS join(371908..372104,372318..372477) /locus_tag="TCM_042399" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17620.1" /translation="MRIKSFELLSLYIERKEDLACERIDENFYRFASELPTKPLVLDE NKANLNDEALGAHRSRKKRGNTAYHQIPRQEMIYCFKDARGLMGMARDDFMVGKTHKE KRMMKRTGPRASSFCA" mobile_element complement(375025..375352) /note="source:CACAO_M_E85296_F59_scaffold_10 1 328" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(375251..376961) /locus_tag="TCM_042400" /note="dbxref CacaoGD:Thecc1EG042400" mRNA complement(join(375251..376220,376783..376961)) /locus_tag="TCM_042400" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022767t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06170.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10224t00001" CDS complement(join(375422..376220,376783..376835)) /locus_tag="TCM_042400" /note="paralog of Thecc1EG022767t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY17621.1" /db_xref="Phytozome:POPTR_0001s06170.1" /db_xref="TAIR:AT1G52340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GX78" /translation="MATSSTLDSSDSSLPSQRLVGKVALVTGGASGIGESIVRLFHKH GAKVCIVDVQDNLGQKVCESLGDAPNVCFFHCDVTIEEEVRSAVDFAVEKFGTLDIMV NNAGLSGPPYHDIRNYDLSDFQKVMDVNVKGVFLGMKHAARIMIPHEKGSIVSVCSVA GVIGGLGPHAYTGSKHAVLGLNRNVAAELGKYGIRVNCVSPYGVPTGLSLRHLPEDER TEDALVGFRAFVAKSANLNGVDLTADHVANAVLFLASDEAGYISGDNLMVDGGFTCVN HSMRVFR" gene complement(377312..378245) /locus_tag="TCM_042401" /note="dbxref CacaoGD:Thecc1EG042401" mRNA complement(377312..378245) /locus_tag="TCM_042401" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040705t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s00880.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage" CDS complement(377523..378077) /locus_tag="TCM_042401" /note="paralog of Thecc1EG040705t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY17622.1" /db_xref="Phytozome:POPTR_0005s00880.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H948" /translation="MDGFVGGAFLSAFLQVLFDRMASREVIDFIRGKKLTDDLLKKLK ILLISVDTVLNDAEEKQITGLTVKKWVDELKDAVYDTEDVMDEIATQALKCRVEAKST SSISQVQQLISTSLGLFEKEIESKLEKIIDRLEYIAEQKDVIGLRTSVGRQSSIRLPT TSLVYESEVYGRDADKEEIMKLLL" gene 378569..379715 /locus_tag="TCM_042402" /note="dbxref CacaoGD:Thecc1EG042402" mRNA 378569..379715 /locus_tag="TCM_042402" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.73 coverage" CDS 378988..379293 /locus_tag="TCM_042402" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17623.1" /translation="MINTKARLGQQRPLALADLPLQSLTHTCWHHFSTVSWQQKTSKH HKKQEEVEKKSKRRKEVVFQKQSLVHGGEEVQTIKVQEKPWKEKTKIYLINQLIFFL" gene complement(379911..382725) /locus_tag="TCM_042403" /note="dbxref CacaoGD:Thecc1EG042403" mRNA complement(join(379911..380346,380464..380548, 380953..381059,381348..381437,381529..381672, 381924..381974,382076..382185,382325..382408, 382488..382725)) /locus_tag="TCM_042403" /product="Ribosomal RNA processing Brix domain protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20010.1" /inference="similar to AA sequence:Phytozome:GSVIVT01000834001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04480t00001" mRNA complement(join(379911..380346,380464..381059, 381348..381437,381529..381672,381924..381974, 382076..382185,382325..382408,382488..382725)) /locus_tag="TCM_042403" /product="Ribosomal RNA processing Brix domain protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20010.1" /inference="similar to AA sequence:Phytozome:GSVIVT01000834001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:PASA:2:TSA:puevd3b040925t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g04480t00001" CDS complement(join(380221..380346,380464..380548, 380953..381059,381348..381437,381529..381672, 381924..381974,382076..382185,382325..382408, 382488..382599)) /locus_tag="TCM_042403" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ribosomal RNA processing Brix domain protein isoform 1" /protein_id="EOY17624.1" /db_xref="Phytozome:GSVIVT01000834001" /db_xref="TAIR:AT1G63780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6R6K6" /translation="MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPT ELRNEEATLRQEIDLEDDYTAIPKSHIDDEYANATERDPKILLTTSRDPSAPLVQFVK ELKFVFPNAERMNRGNQVISEIIESCRAHDFTDVILVHEHRGVPDGLIISHLPFGPTA YFGLLNVVTRHDIKDKKAIGKMPEAYPHLIHDNFGTKLGERTANILKHLFPVPKPDTK RIVTFANQSDYISFRHHIYEKHGGPKSVELKEIGPRFELRLYQIKLGTMDQSEAQIEW VIRPYMNTTKKRNFIGVDQKDDKRKH" CDS complement(join(380928..381059,381348..381437, 381529..381672,381924..381974,382076..382185, 382325..382408,382488..382599)) /locus_tag="TCM_042403" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ribosomal RNA processing Brix domain protein isoform 2" /protein_id="EOY17625.1" /db_xref="Phytozome:GSVIVT01000834001" /db_xref="TAIR:AT1G63780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6R6K6" /translation="MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPT ELRNEEATLRQEIDLEDDYTAIPKSHIDDEYANATERDPKILLTTSRDPSAPLVQFVK ELKFVFPNAERMNRGNQVISEIIESCRAHDFTDVILVHEHRGVPDGLIISHLPFGPTA YFGLLNVVTRHDIKDKKAIGKMPEAYPHLIHDNFGTKLGERTANILKHLFPVPKPDTK RIVTFANQSDYISFRLVLFYRF" gene 382820..386047 /locus_tag="TCM_042404" /note="dbxref CacaoGD:Thecc1EG042404" mRNA join(382820..383105,383216..383391,383487..383535, 383628..383734,383834..383944,384099..384187, 384564..384683,384764..384886,385172..385238, 385335..385414,385630..386047) /locus_tag="TCM_042404" /product="P60-like, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032722001" /inference="similar to AA sequence:Phytozome:GSVIVT01032722001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3779t1" CDS join(382937..383105,383216..383391,383487..383535, 383628..383734,383834..383944,384099..384187, 384564..384683,384764..384886,385172..385238, 385335..385414,385630..385636) /locus_tag="TCM_042404" /codon_start=1 /product="P60-like, putative" /protein_id="EOY17626.1" /db_xref="Phytozome:GSVIVT01032722001" /db_xref="TAIR:AT2G40430.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHX4" /translation="MGKKAKTSRKGKKAWRANISTEDIDDYFEKSTKDALSGGSLTSA PTESLFFIDKSKDLSVKRKIEKKREKVLRVDSVLQKNPFVQAVLSSKQKDSKKKKKEA LKAKDVVLQDVTRDNSAPDSSMVPIWGNEGQHSGKARQVSKNSIIPAVEVEPPGCSYN PSFESHQDSLAEAVAEEMQKAYKIELGPQPVPLTVVGEVIDEDNKYFIEADDGSDEEM NEENLSENKDPATERRPSKTKRVTRVELNKRARRKELQRKEAEAKKAEEFSKDIDSLP DILQEIAKEDEEKQKKHLRKVIAKQERLKACPPRLGKYKFQPAPPQVLLSEELTGSLR KLKGCSTLARDRFKSLEKRGLIPPSAKSGRK" gene 386305..388821 /locus_tag="TCM_042405" /note="dbxref CacaoGD:Thecc1EG042405" mRNA join(386305..386461,386554..386617,386702..386809, 387054..387152,387929..388054,388435..388821) /locus_tag="TCM_042405" /product="ARM repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032723001" /inference="similar to AA sequence:Phytozome:GSVIVT01032723001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg529t1" CDS join(386432..386461,386554..386617,386702..386809, 387054..387152,387929..388054,388435..388580) /locus_tag="TCM_042405" /codon_start=1 /product="ARM repeat superfamily protein" /protein_id="EOY17627.1" /db_xref="Phytozome:GSVIVT01032723001" /db_xref="TAIR:AT3G56210.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B7FGI0" /translation="MRALAAQLNTFLFKRKPWNVQSRNFSSYNGKDEAYLEQEAERKI GWLLKLIFAGTASFVAYQFFPYMGDNLMHQSVSLLHVKDPLFKRMGASRLARFAIDDE RRMKIVEIGGAQELLNMLGSAKDERTLKEALKALSALSKSDQAVGALHHAGAISVIKS TPDTFEDIEIGIYKSNLLKRFQDLRYDISS" gene 388800..390713 /locus_tag="TCM_042406" /note="dbxref CacaoGD:Thecc1EG042406" mRNA join(388800..388949,389490..389744,389966..390121, 390287..390449,390599..390654) /locus_tag="TCM_042406" /product="LURP-one-related 14-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g05880.1" /inference="similar to AA sequence:Phytozome:Glyma14g05880.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc452t16" CDS join(388947..388949,389490..389744,389966..390121, 390287..390449,390599..390630) /locus_tag="TCM_042406" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="LURP-one-related 14-like protein isoform 1" /protein_id="EOY17628.1" /db_xref="Phytozome:Glyma14g05880.1" /db_xref="TAIR:AT3G56180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYM3" /translation="MEALMTASQMAYGVPMISFAGDGFRVPNSVEFILDKKQHGFSDV HYEVSDVNKIIFLQADGSYMTHYRKIVMRNSAGFPILTIREKAITGQKWLVLGGESSE RSQPLCTVQRSCFAPMKTRLDVFLPGKIDEDISEFQYVYTGYFPVLLSVQVNHNSTRR SFCQGRKENFGVKVRSGVDYAFILALIITVLECFSEFRSLSS" mRNA join(389489..389744,389966..390179,390321..390449, 390599..390713) /locus_tag="TCM_042406" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g05880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042408t1" /inference="similar to AA sequence:Phytozome:Glyma14g05880.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17778t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc452t16; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc461t11" CDS join(389499..389744,389966..390179,390321..390449, 390599..390630) /locus_tag="TCM_042406" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042408t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY17629.1" /db_xref="Phytozome:Glyma14g05880.1" /db_xref="TAIR:AT3G56180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHW9" /translation="MTASQMAYGVPMISFAGDGFRVPNSVEFILDKKQHGFSDVHYEV SDVNKIIFLQADGSYMTHYRKIVMRNSAGFPILTIREKAITGQKWLVLGGESSERSQP LCTVQRSCFAPMKTRLDVFLPGKIDEDISEFQVVGSNHPSQSYRVYKGDTITVQVNHN STRRSFCQGRKENFGVKVRSGVDYAFILALIITVLECFSEFRSLSS" gene complement(390285..394023) /locus_tag="TCM_042407" /note="dbxref CacaoGD:Thecc1EG042407" mRNA complement(join(390285..390986,391265..391418, 391517..391982,392106..392309,392577..392729, 393268..394018)) /locus_tag="TCM_042407" /product="Transmembrane amino acid transporter family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29729.m002320" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042409t1" /inference="similar to AA sequence:ricco:29729.m002320" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:PASA:2:TSA:puevd3b040929t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg537t3" mRNA complement(join(390729..390986,391296..391418, 391517..391578,391750..391982,392106..392309, 392577..392729,393268..394023)) /locus_tag="TCM_042407" /product="Transmembrane amino acid transporter family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002320" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042409t1" /inference="similar to AA sequence:ricco:29729.m002320" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg537t3" mRNA complement(join(390761..390986,391296..391418, 391517..391982,392106..392309,392577..392729, 393268..393674)) /locus_tag="TCM_042407" /product="Transmembrane amino acid transporter family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29729.m002320" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042409t1" /inference="similar to AA sequence:ricco:29729.m002320" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05868t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg537t3; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc441t23" CDS complement(join(391301..391418,391517..391578, 391750..391982,392106..392309,392577..392729, 393268..393835)) /locus_tag="TCM_042407" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29729.m002320; paralog of Thecc1EG042409t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 1" /protein_id="EOY17630.1" /db_xref="TAIR:AT3G56200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYM2" /translation="MILTDRKSNSILPFIALSFIRCHVLSSHDSLVITLPYHLGSSPI KCVVMHSKTTNSNNSSSRENPSSDMSSATTGVNSPLLQENRSTAKHTSVSGAVFNVST SIIGAGIMSIPATLKVLGVVPAFFMIVVIAWLADVSVEFLMRYTHAGKSTTYAGVMKE SFGRVGSVLVQICVLMNNLGCLIIYLIIIGDVLSGNQPEGSVHLGVLQEWFGIHWWNT RAFALLFIVVVIMLPLVLFRRVESLRFSSAIAVFLAVLFVAISSVMAISALFQGKTES PSLLPHLDNKTSFFDLFTAVPVIVTAFTFHFNVHPIGFEMDKPSDMMSAVRISLILCG AIYFTVGIFGYLLFGDSIMPDILVNFDQNSGPALGSALNDIVRLSYALHLILFMGSTS AVSLAFIFPGAIALRDVHGISTSRDRIMSAVMIILAAATSIIAISTNIYSFFT" CDS complement(join(391301..391418,391517..391982, 392106..392309,392577..392729,393268..393835)) /locus_tag="TCM_042407" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002320; paralog of Thecc1EG042409t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 2" /protein_id="EOY17631.1" /db_xref="TAIR:AT3G56200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYM2" /translation="MILTDRKSNSILPFIALSFIRCHVLSSHDSLVITLPYHLGSSPI KCVVMHSKTTNSNNSSSRENPSSDMSSATTGVNSPLLQENRSTAKHTSVSGAVFNVST SIIGAGIMSIPATLKVLGVVPAFFMIVVIAWLADVSVEFLMRYTHAGKSTTYAGVMKE SFGRVGSVLVQICVLMNNLGCLIIYLIIIGDVLSGNQPEGSVHLGVLQEWFGIHWWNT RAFALLFIVVVIMLPLVLFRRVESLRFSSAIAVFLAVLFVAISSVMAISALFQGKTES PSLLPHLDNKTSFFDLFTAVPVIVTAFTFHFNVHPIGFEMDKPSDMMSAVRISLILCG AIYFTVGIFGYLLFGDSIMPDILVNFDQNSGPALGSALNDIVRLSYALHLILVFPLLN FSLRANIDEFLFPNRPILAKDNTRYMSLTLILLAICYLAAITIPNIWYFFQFMGSTSA VSLAFIFPGAIALRDVHGISTSRDRIMSAVMIILAAATSIIAISTNIYSFFT" CDS complement(join(391301..391418,391517..391982, 392106..392309,392577..392729,393268..393631)) /locus_tag="TCM_042407" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29729.m002320; paralog of Thecc1EG042409t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 3" /protein_id="EOY17632.1" /db_xref="TAIR:AT3G56200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYM2" /translation="MSSATTGVNSPLLQENRSTAKHTSVSGAVFNVSTSIIGAGIMSI PATLKVLGVVPAFFMIVVIAWLADVSVEFLMRYTHAGKSTTYAGVMKESFGRVGSVLV QICVLMNNLGCLIIYLIIIGDVLSGNQPEGSVHLGVLQEWFGIHWWNTRAFALLFIVV VIMLPLVLFRRVESLRFSSAIAVFLAVLFVAISSVMAISALFQGKTESPSLLPHLDNK TSFFDLFTAVPVIVTAFTFHFNVHPIGFEMDKPSDMMSAVRISLILCGAIYFTVGIFG YLLFGDSIMPDILVNFDQNSGPALGSALNDIVRLSYALHLILVFPLLNFSLRANIDEF LFPNRPILAKDNTRYMSLTLILLAICYLAAITIPNIWYFFQFMGSTSAVSLAFIFPGA IALRDVHGISTSRDRIMSAVMIILAAATSIIAISTNIYSFFT" gene 394431..396394 /locus_tag="TCM_042408" /note="dbxref CacaoGD:Thecc1EG042408" mRNA join(394431..394539,395045..395083,395360..395547, 395743..395904,395998..396394) /locus_tag="TCM_042408" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g05880.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042406t2" /inference="similar to AA sequence:Phytozome:Glyma14g05880.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc236t6" CDS join(394461..394539,395045..395083,395360..395547, 395743..395904,395998..396144) /locus_tag="TCM_042408" /note="paralog of Thecc1EG042406t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17633.1" /db_xref="Phytozome:Glyma14g05880.1" /db_xref="TAIR:AT3G56180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHW9" /translation="MCRHHDLIKEVDDFVYRFQIKAGKDYGACPSRKCCKTPNYVACW ISQLVAKKKHRGLFDVHHEVLDVNGNLFLQVDGSYKALHRKRIMRDPAGFPILTMREK LLLNVRRSHSIHMKTRLDVFLPSNINEDISNFLVVDSYPSQSSRVYKGDTVISEVNYN LSWKSFCQGTKEDFRIKVCPGVDYAFIVALVMILVESNMMLRAI" mobile_element complement(395222..395383) /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2022" /mobile_element_type="transposon:TIR/Mutator" gene complement(396469..398545) /locus_tag="TCM_042409" /note="dbxref CacaoGD:Thecc1EG042409" mRNA complement(join(396469..396496,396622..397339, 397472..397675,397765..397917,398128..398440)) /locus_tag="TCM_042409" /product="Transmembrane amino acid transporter family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29729.m002320.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042407t2" /inference="similar to AA sequence:ricco:29729.m002320" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7946t2_C2; inference alignment:Newbler:10:TSA:cgbaB_g08480t00001" mRNA complement(join(396560..396779,396874..397339, 397472..397675,397765..397917,398128..398545)) /locus_tag="TCM_042409" /product="Transmembrane amino acid transporter family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002320.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042407t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s18910.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08480t00001" CDS complement(join(396650..396779,396874..397339, 397472..397675,397765..397917,398128..398488)) /locus_tag="TCM_042409" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042407t3" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 1" /protein_id="EOY17634.1" /db_xref="Phytozome:POPTR_0010s18910.1" /db_xref="TAIR:AT3G56200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYM2" /translation="MSPVSGVNVPLLPESKQPAKHASVPGAVFNVSTSIIGAGIMSIP ATLKVLGVVPAFLLIVVIAWLADISVEFLMRYTHAGDSTTYAGVMRESFGRVGSVLVQ ICVMMTNLGCLIIYLIIIGDVLSGNQPEGSVHLGVLQQWFGIHWWNSRAFALLVTLVF ILLPLVLFRRVESLRYSSAISVFLAVLFVAISSVMAILALLEGKTKSPRLLPELDNKT SFFDLFTAVPVIVTAFTFHFNVHPIGFEMDKPSDMISAVRISLVLCAAIYFTTGVFGY LLFGDSIMPDILVNFDQNSGSAVGYLLNDIVRLSYAFHLMLVFPLLNFSLRSNIDEFL FPNKTLLAKDNTRFVSLTLVLLAFSYLAAIAIPNIWYFFQFVGSTSVICLAFIFPGAI VLRDAHGISTTRDRILAAVMITLAVITSTIAISANIYSFFAENES" CDS complement(join(396849..397339,397472..397675, 397765..397917,398128..398368)) /locus_tag="TCM_042409" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002320; paralog of Thecc1EG042407t2" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 2" /protein_id="EOY17635.1" /db_xref="TAIR:AT3G56200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYM2" /translation="MSIPATLKVLGVVPAFLLIVVIAWLADISVEFLMRYTHAGDSTT YAGVMRESFGRVGSVLVQICVMMTNLGCLIIYLIIIGDVLSGNQPEGSVHLGVLQQWF GIHWWNSRAFALLVTLVFILLPLVLFRRVESLRYSSAISVFLAVLFVAISSVMAILAL LEGKTKSPRLLPELDNKTSFFDLFTAVPVIVTAFTFHFNVHPIGFEMDKPSDMISAVR ISLVLCAAIYFTTGVFGYLLFGDSIMPDILVNFDQNSGSAVGYLLNDIVRLSYAFHLM LVFPLLNFSLRSNIDEFLFPNKTLLAKDNTRFVSLTLVLLAFSYLAAIAIPNIWYFFQ FVGSTSVICLAFIFPGAIVLRYSCYLST" gene complement(399248..402076) /locus_tag="TCM_042410" /note="dbxref CacaoGD:Thecc1EG042410" mRNA complement(join(399248..400004,400096..400288, 400380..400559,400839..401042,401131..401283, 401518..402076)) /locus_tag="TCM_042410" /product="Transmembrane amino acid transporter family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002319" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042409t1" /inference="similar to AA sequence:ricco:29729.m002319" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8352t1_C2" mRNA complement(join(399383..400004,400096..400559, 400839..401042,401131..401283,401518..401950)) /locus_tag="TCM_042410" /product="Transmembrane amino acid transporter family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29729.m002319" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042409t1" /inference="similar to AA sequence:ricco:29729.m002319" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg169t4; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8352t1_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg169t2" CDS complement(join(399893..400004,400096..400288, 400380..400559,400839..401042,401131..401283, 401518..401899)) /locus_tag="TCM_042410" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29729.m002319; paralog of Thecc1EG042409t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 1" /protein_id="EOY17636.1" /db_xref="TAIR:AT3G56200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYM2" /translation="MKQTETGASELIPLLPDVDSLECQSSRGASVSGAVFNICTTMVG AGIMSIPASVKVLGIIPGFVVIFMIAFLVEVTVEFLLRYTQSGKATTYAGLMAESFGS FGSLSVQICVMVTNLGCLIIYLIIIGDVLCGIQTGGTLHLGLLQEWFGIQWWNSRAYV ILFVVLFVVLPLVLLPHMKSLRHTSAISILLAVLFIAISSAMAIYALWKGKTQKLRLL PDFANQVSIFDLFTTVPVLVTGFGFHVNIHPIRGELGRPSDMSSAVRISLAVCIAIYF SIGFFGYLLFGDSIMADMLVNFDQNSDSAVDELLFAKKPVLARDTPRFAILTCALLAV TYIFAIAIPNIWYFFQFLGSTTVVSLSFIFPGAIVLRDVHGISTRKDKIMAILVIIVA IVTSMIAITTNLWSS" CDS complement(join(400294..400559,400839..401042, 401131..401283,401518..401899)) /locus_tag="TCM_042410" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002319; paralog of Thecc1EG042409t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 2" /protein_id="EOY17637.1" /db_xref="TAIR:AT3G56200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYM2" /translation="MKQTETGASELIPLLPDVDSLECQSSRGASVSGAVFNICTTMVG AGIMSIPASVKVLGIIPGFVVIFMIAFLVEVTVEFLLRYTQSGKATTYAGLMAESFGS FGSLSVQICVMVTNLGCLIIYLIIIGDVLCGIQTGGTLHLGLLQEWFGIQWWNSRAYV ILFVVLFVVLPLVLLPHMKSLRHTSAISILLAVLFIAISSAMAIYALWKGKTQKLRLL PDFANQVSIFDLFTTVPVLVTGFGFHVNIHPIRGELGRPSDMSSAVRISLAVCIAIYF SIGFFGYLLFGDSIMADMLVNFDQNSDSAVGQVVNDIVRLSYAMHLARLSCNEFLPES " gene 403031..405929 /locus_tag="TCM_042411" /note="dbxref CacaoGD:Thecc1EG042411" mRNA join(403031..403254,403602..405929) /locus_tag="TCM_042411" /product="PLAC8 family protein" /inference="alignment:exonerate- protein:2:ricco:29729.m002317" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042412t1" /inference="similar to AA sequence:frave:gene21295" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg269t2" CDS 403791..405482 /locus_tag="TCM_042411" /note="dbxref frave:gene21295; paralog of Thecc1EG042412t1" /codon_start=1 /product="PLAC8 family protein" /protein_id="EOY17638.1" /db_xref="TAIR:AT3G10980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC94" /translation="MASSDNGNQKEQGEESYVTNTNGQVPLHISTSQRMLLNDENTQR RSLRSFMSPANRIKFFKFGSASAKFKRIAEERDEVSRLVASSSGHRFRERLTGVFAKK IDWVSLMKMSKQWIKDPMNMALFVWIMCVAISGAILFLVMTGMLNAVLPKKSQRDAWF EVNNQILNALFTLMCLYQHPKRFYHLVLLCRWKPEDISRLRKIYCKNGTYKPHEWAHM MVVIVLLHINCFAQYALCGLNLGYRRSERPAIGVGICVSVAIAAPAMAGVYTIVSPLG KDYDSEIDEEAQRQIDTRESERPEQLRRQSLEKRYSFASGGEERIVESRPLWSGGIFD FWDDISLAYLSLFCSFCVFGWNMERLGFGNMYVHIATFLLFCMAPFWIFNLAAVNIDN ETVREALSVTGIVLCMFGLLYGGFWRIQMRKRFNLPAYDFCCGQPAVSDCTLWLFCCW CALAQEARTGNSYDIVEDKFMKKQMDNGNQQLISPLPREDGIGQFSPWPSSSPGYNSS PSTRFTANSSSSRIVSKEYYSPDRQLSVVKEESSLSGKDETMIPPTPSLVQREAT" mobile_element complement(406669..406742) /note="source:INTACT1421F_F389_scaffold_9-int 7472 7538" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(411158..412603) /note="source:CACAO_M_S_E145610_F9_scaffold_10 1 1446" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 412878..420402 /locus_tag="TCM_042412" /note="dbxref CacaoGD:Thecc1EG042412" mRNA join(412878..413086,414439..416134,418441..418621, 418766..418938,419089..420402) /locus_tag="TCM_042412" /product="PLAC8 family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042411t1" /inference="similar to AA sequence:ricco:29729.m002317" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS join(413039..413086,414439..416134,418441..418621, 418766..418938,419089..419411) /locus_tag="TCM_042412" /note="dbxref ricco:29729.m002317; paralog of Thecc1EG042411t1" /codon_start=1 /product="PLAC8 family protein" /protein_id="EOY17639.1" /db_xref="TAIR:AT3G10980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC94" /translation="MPLRLIVVLILTHATKELLTVQHSSGIDWEFNFDIRMASSDNGC QKEQVEESNVTETKGQVPLHIPTSQGVLLNDENPLRKSPSSSMSPPNRIKFLKFGSAS AKFKRIAEERDEVSRLVASSSGDRLRERLTGVFAKKIDWVSLMKMSKQWINRDPMNMA LIVWIIGVAISGSILFLVMTGMLNAVLPKKSQRNAWAEVNSQILNALSTLMSLYQLPL RFYHLVLLCRWKPEDICRLRKKYCEGGTYKPHEWKHMMVIVVLLHINCFAQYALCGLN VGYRRSERPAIGVGICNAISIAAAIMAMVYSNVSPLGRNYDIELDEEAECWTDAGESK RPEQSRLQSLEKRYSFAFRDEERIVESRPLWSGRIHDFWRDISLAFLSLFCSICVFGW NMERFGFGNMYVHIATFLLLCTAPLLIFSLAAVNIDNEIVRDALGVTGIALCWFGLLY GGFWRNKMRKRFNLPTYNFCFGQPAASDCTLWLCCCCCSLAQEVRTGNSYDIIEDRFI KKQMDNGNQQLISPLPREDGIGQFSPGPSSSPGYNSSPSTRFTANSSSPRIVSKEYYS PDRQLSVVTEESSISGYRRSERPAIGVGICVSVAIAAPAMAGVYTIVSPLGKDYGSEM NEEAKKQIDTGESRRPEHFCVFGWNMERLGIGNMYVQIATFLLFCMAPFWVFNLAAVN IDNETVREALSVTGIVLSRTWNSYDIVEDKFIEKQMDNGSQQLISPSPREDGIGQFSP SPSSSPGNNSSPSRRFSASSSSPRIVSKEYYSPERQLSMVKEESFVSGKDETMIPPGL SLIQREAT" mobile_element 420623..420801 /note="source:scaffold_1_CACTA_0016 1412 1582" /mobile_element_type="transposon:TIR/CACTA" mobile_element 421034..421555 /note="source:CACAO_PIF_E144_scaffold_10 1203 1693" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(421532..423441) /note="source:CACAO_hAT_E410_scaffold_1 611 2502" /mobile_element_type="transposon:TIR/hAT" mobile_element 423430..424074 /note="source:CACAO_PIF_E144_scaffold_10 1685 2391" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 424086..424807 /note="source:scaffold_1_CACTA_0016 1708 2438" /mobile_element_type="transposon:TIR/CACTA" mobile_element 424092..424902 /note="source:CACAO_on_S_E46_scaffold_2 661 1432" /mobile_element_type="transposon:TIR/Mutator" gene 427815..429544 /locus_tag="TCM_042413" /note="dbxref CacaoGD:Thecc1EG042413" mRNA join(427815..427920,428414..429544) /locus_tag="TCM_042413" /product="Senescence associated gene 20, putative" /inference="alignment:exonerate- protein:2:ricco:29729.m002316" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042245t1" /inference="similar to AA sequence:ricco:29729.m002316" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10528t00001" CDS join(427848..427920,428414..429138) /locus_tag="TCM_042413" /note="dbxref ricco:29729.m002316; paralog of Thecc1EG042245t1" /codon_start=1 /product="Senescence associated gene 20, putative" /protein_id="EOY17640.1" /db_xref="TAIR:AT3G10985.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC94" /translation="MNIFTRRHMTNFLCHKIKGRKIQLENQSQVDDFLYKAASHPHIR PSPVPSGFSLSNFCLKKPLSQKPSFLVLSLLSLLSSFPGVLFQELANTQEKILEETNK NQEVVLAFYEALKTRDVETVHQILAPDLEWWFHGPPTHQFMMRLLTGASSDDSFHFEV DPLSVTTFGSTVIVEGCDHSRSISWVHAWTVTDGIITQVREYFNTSLTVTRLGNSHQS PPSPSSPSSPSAPSSTAEIAPVHCPSVWESSFSNRVGKSVPGLVLAI" gene complement(434068..435885) /locus_tag="TCM_042414" /note="dbxref CacaoGD:Thecc1EG042414" mRNA complement(join(434068..434568,434725..434949, 435026..435403,435864..435885)) /locus_tag="TCM_042414" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18950.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042406t2" /inference="similar to AA sequence:Phytozome:POPTR_0010s18950.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b040937t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg191t3" mRNA complement(join(434357..434568,434725..434946, 435026..435434)) /locus_tag="TCM_042414" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18950.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042406t2" /inference="similar to AA sequence:Phytozome:POPTR_0010s18950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg191t3" CDS complement(join(434440..434568,434725..434946, 435026..435256)) /locus_tag="TCM_042414" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042406t2" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY17641.1" /db_xref="Phytozome:POPTR_0010s18950.1" /db_xref="TAIR:AT3G56180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHW9" /translation="MASDDQIIKVVGDRFCVPYTMELLVKRKIQSFSNAHYDVFDATG NVLLQVDGGVWNFQRKRVMKDPAGLPVITMREKALSWKQQWVVHQGESSEKDHFICCV QRSNALQIKNKLDVCLASSYKDDGRDFRVTGSFASLSFKVRRGNSIIAEVSHNFTWGS CKGKESFKVKVYPEVDYAFIVALVVIMHENDNA" CDS complement(join(434440..434568,434725..434949, 435026..435256)) /locus_tag="TCM_042414" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042406t2" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY17642.1" /db_xref="Phytozome:POPTR_0010s18950.1" /db_xref="TAIR:AT3G56180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHW9" /translation="MASDDQIIKVVGDRFCVPYTMELLVKRKIQSFSNAHYDVFDATG NVLLQVDGGVWNFQRKRVMKDPAGLPVITMREKQALSWKQQWVVHQGESSEKDHFICC VQRSNALQIKNKLDVCLASSYKDDGRDFRVTGSFASLSFKVRRGNSIIAEVSHNFTWG SCKGKESFKVKVYPEVDYAFIVALVVIMHENDNA" gene 436575..438453 /locus_tag="TCM_042415" /note="dbxref CacaoGD:Thecc1EG042415" mRNA join(436575..436988,438006..438075,438149..438453) /locus_tag="TCM_042415" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene13834.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021578t1" /inference="similar to AA sequence:frave:gene21293" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3794t1" CDS join(436638..436988,438006..438075,438149..438201) /locus_tag="TCM_042415" /note="dbxref frave:gene21293; paralog of Thecc1EG021578t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17643.1" /db_xref="TAIR:AT5G05360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYJ0" /translation="MGRSILCTTKGQDFAKAVPSDKLHRPKHVKPTSRNRVACQEKAS LPGVRVDSERVKQKEMDSWGDRDRIPLAQVVSDLVKGWFQDALKEAKAGDTNMQVLVG QMYCSGFGVPKDVQKGLAWIGKASRSRSSVWKVSDKHPGYNASDSDSDELKGDAK" gene 438982..444183 /locus_tag="TCM_042416" /note="dbxref CacaoGD:Thecc1EG042416" mRNA join(438982..439068,439750..439858,440158..440241, 440440..440590,441002..441124,442103..442225, 443481..443627,443724..444183) /locus_tag="TCM_042416" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS join(439767..439858,440158..440241,440440..440590, 441002..441124,442103..442225,443481..443627, 443724..443819) /locus_tag="TCM_042416" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17644.1" /translation="MFEDNKELLVMEFAKLDQVMKEKALVEVVLRSYILINGRINEGD VECGFGNVCALVEESYWNDEDGFKEIFSKAWDASHSKHGSKGDLWWRPRLIKPAIKEW QSVNGEIDLCLEEEVTEAIFNCDGNKAPRPDGFNFNFFKAQWLMIKGEVYFMSLFEMP KGVKEELDRIQRWFLWGCSKEIGIQFANLETVKLIFSKKVSWGAANLAKVMAIREAMI IFAASSWTNLAGIILEIDSRNTIQHIPRVGNELADNLGKLGVARMNDLLQFSS" mobile_element 444561..445463 /note="source:scaffold_8_CACTA_0855 1777 2604" /mobile_element_type="transposon:TIR/CACTA" gene complement(444895..447505) /locus_tag="TCM_042417" /note="dbxref CacaoGD:Thecc1EG042417" mRNA complement(join(444895..445589,445676..445744, 445823..445982,446082..446138,446229..446416, 446511..446621,446741..446855,446990..447045, 447240..447505)) /locus_tag="TCM_042417" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017002t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s07470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3793t1" mRNA complement(join(445286..445579,446081..446138, 446229..446416,446511..446621,446741..446855, 446990..447045,447240..447423)) /locus_tag="TCM_042417" /product="nuclease isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017002t1" /inference="similar to AA sequence:ricco:29729.m002312" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc406t5_C1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3793t1" mRNA complement(join(445288..445579,445676..445744, 445823..445982,446082..446138,446229..446416, 446511..446621,446741..446855,446990..447045, 447240..447446)) /locus_tag="TCM_042417" /product="nuclease isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017002t1" /inference="similar to AA sequence:ricco:29729.m002312" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc402t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3793t1" mRNA complement(join(445288..445589,445676..445982, 446082..446138,446229..446416,446511..446621, 446741..446855,446990..447045,447240..447446)) /locus_tag="TCM_042417" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017002t1" /inference="similar to AA sequence:ricco:29729.m002312" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc402t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3793t1" CDS complement(join(445451..445579,445676..445744, 445823..445982,446082..446138,446229..446416, 446511..446621,446741..446855,446990..447045, 447240..447392)) /locus_tag="TCM_042417" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002312; paralog of Thecc1EG017002t1" /codon_start=1 /product="nuclease isoform 2" /protein_id="EOY17646.1" /db_xref="TAIR:AT2G40410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYJ1" /translation="MGNALRFLYSYCCKPATGGDAGSHGPQGVSTANVGVSALAHDIF QFEITSQVPEGLSKHVVSSRKAQANWYRKLLEAWREAKPPPNTPEEASRFVIQTLKRH QKADVEGLLAFYGLPLPHALVQPSASAPTSLPQGVKFELQTLPVDVKAIPDGDTITVY VSTTDPRESANVPRDVQLAAVQRSEARAEKNYTEADALHKKITDAGYRVLNLQNQEIL ARKYRIRLRGIDAPESSMPYGKEAKEELVKLVQGKCLRVLVYGEDRYGRCVGDIYCNG KFVQEIMLKKGLAWHYSAYDQRIELATRLEQNELVCGLHQILRNHGNGERTNEKVDDI VLIEQINLQSV" CDS complement(join(445451..445579,446081..446138, 446229..446416,446511..446621,446741..446855, 446990..447045,447240..447392)) /locus_tag="TCM_042417" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29729.m002312; paralog of Thecc1EG017002t1" /codon_start=1 /product="nuclease isoform 4" /protein_id="EOY17648.1" /db_xref="TAIR:AT2G40410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYJ1" /translation="MGNALRFLYSYCCKPATGGDAGSHGPQGVSTANVGVSALAHDIF QFEITSQVPEGLSKHVVSSRKAQANWYRKLLEAWREAKPPPNTPEEASRFVIQTLKRH QKADVEGLLAFYGLPLPHALVQPSASAPTSLPQGVKFELQTLPVDVKAIPDGDTITVY VSTTDPRESANVPRDVQLAAVQRSEARAEKNYTEADALHKKITDAGYRVLNLQNQEIL ARKYRIRLRRLEQNELVCGLHQILRNHGNGERTNEKVDDIVLIEQINLQSV" CDS complement(join(445491..445589,445676..445744, 445823..445982,446082..446138,446229..446416, 446511..446621,446741..446855,446990..447045, 447240..447392)) /locus_tag="TCM_042417" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017002t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY17645.1" /db_xref="Phytozome:POPTR_0008s07470.1" /db_xref="TAIR:AT2G40410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYJ1" /translation="MGNALRFLYSYCCKPATGGDAGSHGPQGVSTANVGVSALAHDIF QFEITSQVPEGLSKHVVSSRKAQANWYRKLLEAWREAKPPPNTPEEASRFVIQTLKRH QKADVEGLLAFYGLPLPHALVQPSASAPTSLPQGVKFELQTLPVDVKAIPDGDTITVY VSTTDPRESANVPRDVQLAAVQRSEARAEKNYTEADALHKKITDAGYRVLNLQNQEIL ARKYRIRLRGIDAPESSMPYGKEAKEELVKLVQGKCLRVLVYGEDRYGRCVGDIYCNG KFVQEIMLKKGLAWHYSAYDQRIELATWEKEARAKRVGLWASSNPEKPWEWRKDKREG R" CDS complement(join(445781..445982,446082..446138, 446229..446416,446511..446621,446741..446855, 446990..447045,447240..447392)) /locus_tag="TCM_042417" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29729.m002312; paralog of Thecc1EG017002t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY17647.1" /db_xref="TAIR:AT2G40410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYJ1" /translation="MGNALRFLYSYCCKPATGGDAGSHGPQGVSTANVGVSALAHDIF QFEITSQVPEGLSKHVVSSRKAQANWYRKLLEAWREAKPPPNTPEEASRFVIQTLKRH QKADVEGLLAFYGLPLPHALVQPSASAPTSLPQGVKFELQTLPVDVKAIPDGDTITVY VSTTDPRESANVPRDVQLAAVQRSEARAEKNYTEADALHKKITDAGYRVLNLQNQEIL ARKYRIRLRGIDAPESSMPYGKEAKEELVKLVQGKCLRVLVYGEDRYGRCVGDIYCNG KFVQVLVHEVSSPGLTS" gene 451488..452115 /locus_tag="TCM_042418" /note="dbxref CacaoGD:Thecc1EG042418" mRNA join(451488..451563,451673..451748,451849..452115) /locus_tag="TCM_042418" /product="Heavy metal transport/detoxification superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032731001" /inference="similar to AA sequence:TAIR:AT5G05365.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1069t5" CDS join(451555..451563,451673..451748,451849..451982) /locus_tag="TCM_042418" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein" /protein_id="EOY17649.1" /db_xref="TAIR:AT5G05365.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56ZM7" /translation="MANVVELKVGLHCEECIKKILKAIKKIEDIETYNVDTKLNKVVV TGNVTRDEVIRVLQKIGKQANTWGSADD" gene complement(452162..452965) /locus_tag="TCM_042419" /note="dbxref CacaoGD:Thecc1EG042419" mRNA complement(join(452162..452546,452626..452965)) /locus_tag="TCM_042419" /product="Poly(A)-binding protein C-terminal interacting protein 6, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07450.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s07450.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09333t00001" CDS complement(join(452386..452546,452626..452881)) /locus_tag="TCM_042419" /codon_start=1 /product="Poly(A)-binding protein C-terminal interacting protein 6, putative" /protein_id="EOY17650.1" /db_xref="Phytozome:POPTR_0008s07450.1" /translation="MEVFSQRSSSSTLNPNAPLFVPLAYRTVEDFSDQWWALVQSSPC FRDYWLRERFHDPQNDDDSLFFPDDLDAIFDEYDDFSAYSRQQEKEGDGDKELVPIGA LKWRKGRVAAESPRFLEKAPKIVNVKVSPRTIHQPR" gene 453721..457681 /locus_tag="TCM_042420" /note="dbxref CacaoGD:Thecc1EG042420" mRNA join(453721..454073,454253..455260,455354..456513, 456611..457161,457324..457681) /locus_tag="TCM_042420" /product="Cation proton exchanger, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020655" /inference="similar to AA sequence:Phytozome:POPTR_0010s17830.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01732t00001" CDS join(453834..454073,454253..455260,455354..456496) /locus_tag="TCM_042420" /codon_start=1 /product="Cation proton exchanger, putative" /protein_id="EOY17651.1" /db_xref="Phytozome:POPTR_0010s17830.1" /db_xref="TAIR:AT3G44900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HF61" /translation="MEAANSSFSNDLEPRYRVDGSCWRFIRVASDGLFSEPGDHMFRH TLVVLQLQLAIIFILATIIHLLLRRFHLPRLVSELLAGLILGPTVLGRFFPKISDILF SQQSLKILSELTRFGYLFFMFLIGVKMDVSLITKSGKRAWTIGSIVIVFPMLTIVLIA KYIGRTVDNMDIYNLEWVGLFSGTLMLTSFPVVACLLMHLKIINSELGYLALSSALIS DLTSVVIVNLNSYWQLIKLASIRVALKSMFLCIALVVFIIAVLRPMMYWMIRRTPEGK PVRDAYVFLLVIALLLVAIVGDNVGLQYMYGPFILGLAVPTGPPLASILIEKLDTIVT GWMLPLMSTSCGYKSNLWELNRPLPASEIFVITVGFLLKTTCGFIPAICFKMPCKDAT ALALMLTAKGIVELGTFATNADKQSIVTQQFTLAVVVVFILAAAVPILTRKLYDPSKT YTGYQKRTILNSSTHEGLRVLVCAHRQDDALSAIKLLELSNPTKESPLSVYGLYLEEL IGGSTPLLLNHQLGQKSSDGSRWQPVINVFNYFKSQNKKQNQVHVFTAISPPKLMHED ICWVAFDNSVALIILPFHRKWNSKGKMISDSKDLRALNCKVLNKAPCSVGVLIDRSRT RGPSILANSSAYHVCVIFLGGKDDREALALAQRMRGWPSVFLTVVRFIASNDCYQQGW EIMLDDECLRDVKHQSKNNGNVLYKEEMVTDGADTSRLVGSLLEESYDLFLVGRHSRT NSPVISGLSEWIELPELGPIGDLLASSEITNPISAFVVQHQIIEGGCESTLTGFEI" gene 456835..461329 /locus_tag="TCM_042421" /note="dbxref CacaoGD:Thecc1EG042421" mRNA join(456835..456963,458600..459727,459901..459938, 460239..461329) /locus_tag="TCM_042421" /product="Cation proton exchanger, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g35770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042237t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19030.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg218t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg216t1" mobile_element complement(458031..458117) /note="source:CACAO_PIF_E144_scaffold_10 5991 6072" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(458630..459727,459901..459938,460239..460371) /locus_tag="TCM_042421" /note="paralog of Thecc1EG042237t1" /codon_start=1 /product="Cation proton exchanger, putative" /protein_id="EOY17652.1" /db_xref="Phytozome:POPTR_0010s19030.1" /db_xref="TAIR:AT2G13620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HSI0" /translation="MMSVVIVTAVITPLIRKLYDPSKQYASVKRSTIHHAKRDSEFRI VVCLHSHESVPTIMNLLEVSHASRESPIAVTAMVLVELVGRSIPILVPNHSRRLVPTN SSTAGRVCNAFSQYEEYNQGCASVQSYTSISHFQTMHDDICRIAFEKRAHIVIVPFHK QWAIDGKIGSMSRPIQNLNINVLEKAPCSVGILIDRGVLNGFVSARTSSKFQVAVLFI GGPDDMESLAYGCRMVKHESVNLTVIRFLLFGGENSKDRKNDSHLINEHRQDNMGNER FLYVEEVLRDAEGLSSYIRGAIAHFHLILVGRYHPQSPLLEGLGEWSECPELGIVGDM LASPDYKTTATVLVIQQQRLGGKLFNHNLPFVGTLVGNQLQAIANFLYIIPRVQRMLL STRQFLGIKSRRIQGIPISSSLTKEAIISA" gene 461470..463758 /locus_tag="TCM_042422" /note="dbxref CacaoGD:Thecc1EG042422" mRNA 461470..463758 /locus_tag="TCM_042422" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s07790.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037603t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s07790.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc19630t1" CDS 461548..463092 /locus_tag="TCM_042422" /note="paralog of Thecc1EG037603t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17653.1" /db_xref="Phytozome:POPTR_0018s07790.1" /db_xref="TAIR:AT4G29780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYH2" /translation="MEINSFTFLNPEDYYNTGSSWFQELDNGFNKKRKKEDESGDGGG NGFFQEGELNKRGYGDILASLLLLEEEAKQEQDQWTTESQQDKALFEFNHKRKVQAMN EYYNQLQQHYSEADHLDGLTAKRARKSASAMAATVAATSTAAGNDNVNVSNETGSGSG QQRRLWVKDRSKDWWDRCNHPDFPEEEFRKAFRMSKATFEMICQELEPAVTKKNTMLR DAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCSAIKSVMMPKHIQW PDDRKMKEIKQEFESTSGIPNIGGSIYTTHVPIIAPKVNVAAYFNRRHTERNQKTSYS ITVQGVVDQKGIFTDVCIGWPGSMPDDKVLENSALYQRANKGVLKDVWIVGNSGYPLM DWVLVPYTHQNLTWAQHGFNEKIGEIQKVAKQAFARLKGRWSCLQKRTEVKLQELPMV LGACCVLHNICQMSNEEMEPELQFELFDDEMIPENNLRSAKAVHARDQIAHNLLHHGL GGTGFL" gene complement(463240..468884) /locus_tag="TCM_042423" /note="dbxref CacaoGD:Thecc1EG042423" mRNA complement(join(463240..463447,463521..463756, 464247..464292,464381..464449,465039..465101, 465189..465449,465721..465774,466337..466413, 466734..466940,468065..468143)) /locus_tag="TCM_042423" /product="Biotin/lipoyl attachment domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002301" /inference="similar to AA sequence:Phytozome:Glyma11g35740.4" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02710t00001; inference alignment:Newbler:10:TSA:cgbaB_g02710t00001" CDS complement(join(463695..463756,464247..464292, 464381..464449,465039..465101,465189..465449, 465721..465774,466337..466413,466734..466940, 468065..468098)) /locus_tag="TCM_042423" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Biotin/lipoyl attachment domain-containing protein isoform 1" /protein_id="EOY17654.1" /db_xref="Phytozome:Glyma11g35740.4" /db_xref="TAIR:AT3G56130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T4I1" /translation="MESSAALRSFHYSVGAVSQAHCSLERPSTVHMYSCGLATSRKSC VPGLMFGGKNNSATKRNVTLISCMKTPEASVTAKSNVPLDSTAQGSMEKKTSRNATFP NGFEALVLEVCDETEVAELKMKIGDFEMHLKRNVGATKAPLSNISPTTAPPIPTKPMN ESAAVAPPPSPPKPSPEKPTPFKNAAFGKSSKLAALEASGSSNYVLVPSPIVGTFRRG RTVKGKKQPPICKEGDLIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFDDGDAVGYG DPLIAVLPSFHGIE" mRNA complement(join(463729..464122,464247..464292, 464381..464449,465039..465101,465189..465449, 465721..465774,466337..466413,466734..466940, 468065..468121,468709..468884)) /locus_tag="TCM_042423" /product="Biotin/lipoyl attachment domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29729.m002301" /inference="similar to AA sequence:Phytozome:Glyma11g35740.4" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc182t6_C1; inference alignment:Newbler:10:TSA:cgbaB_g02710t00001" CDS complement(join(464076..464122,464247..464292, 464381..464449,465039..465101,465189..465449, 465721..465774,466337..466413,466734..466940, 468065..468098)) /locus_tag="TCM_042423" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Biotin/lipoyl attachment domain-containing protein isoform 2" /protein_id="EOY17655.1" /db_xref="Phytozome:Glyma11g35740.4" /db_xref="TAIR:AT3G56130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T4I1" /translation="MESSAALRSFHYSVGAVSQAHCSLERPSTVHMYSCGLATSRKSC VPGLMFGGKNNSATKRNVTLISCMKTPEASVTAKSNVPLDSTAQGSMEKKTSRNATFP NGFEALVLEVCDETEVAELKMKIGDFEMHLKRNVGATKAPLSNISPTTAPPIPTKPMN ESAAVAPPPSPPKPSPEKPTPFKNAAFGKSSKLAALEASGSSNYVLVPSPIVGTFRRG RTVKGKKQPPICKEGDLIKEGQVIGFLDQFGTELPVKSDVAGEVLKLLFDDGGLIALR QTMGAARDA" mobile_element 467442..467597 /note="source:CACAO_on_S_E390_scaffold_9 2209 2362" /mobile_element_type="transposon:TIR/Mutator" mobile_element 468647..468732 /note="source:scaffold_5_CACTA_0596 1759 1844" /mobile_element_type="transposon:TIR/CACTA" gene complement(468996..472465) /locus_tag="TCM_042425" /note="dbxref CacaoGD:Thecc1EG042425" mRNA complement(join(468996..470074,470153..471048, 472312..472465)) /locus_tag="TCM_042425" /product="Neuronal PAS domain-containing protein 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19040.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19040.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc14776t1_C2" CDS complement(join(469435..470074,470153..471009)) /locus_tag="TCM_042425" /codon_start=1 /product="Neuronal PAS domain-containing protein 4" /protein_id="EOY17656.1" /db_xref="Phytozome:POPTR_0010s19040.1" /db_xref="TAIR:AT2G40390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HSI1" /translation="MASCCNPDMFTWIQNLPPITQWKTSSMSVCICSSSSSSHPSLKL SVAKNPHSSTLSISIVADFSVSIPLWASKPLAINPKSSKLLDEEAISCLVLNFIQDVL SYGSNKNSFLIRFPKLESVSGLKGIFNLSFLTLAFLICIYEAPVDLRSACLNTLKHQL ACSQLREASKSLMRLLGSNLEEQWMRSINLAITNWIVELQATHRTLMKTPSPLFSYAI STFGLWKVQLYCPVIAMDIESSSNASVDDQRLLFSLHYHQLEGVIQVNYKVIVQEKWI DVMLNIDNIRCNIIRLVNETLMNERGVGADDKHFPSRVSLQITPTLQSNILSVSVSKS TENPAREIEIEKSIETSFDPPNSFLGLKVSVGETTTMSMKPWKFEQSVNGYSGTLNWF LHDSVDGREVVSSKPSKLALINPKAWFKDRYSNVHRPFTRQGGVIFAGDEYGEKVWWK VDKSAMGKTMEWEIRGWIWLTYWPNKHRTFYNETRRLEFREILHLNIA" mobile_element complement(471810..471972) /note="source:scaffold_4_CACTA_0502 6 152" /mobile_element_type="transposon:TIR/CACTA" gene 472944..473861 /locus_tag="TCM_042426" /note="dbxref CacaoGD:Thecc1EG042426" mRNA 472944..473861 /locus_tag="TCM_042426" /product="Prenylated RAB acceptor 1.B4" /inference="alignment:exonerate- protein:2:ricco:29729.m002297" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021593t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400041410" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12615t00001" CDS 473039..473695 /locus_tag="TCM_042426" /note="paralog of Thecc1EG021593t1" /codon_start=1 /product="Prenylated RAB acceptor 1.B4" /protein_id="EOY17657.1" /db_xref="Phytozome:PGSC0003DMP400041410" /db_xref="TAIR:AT5G05380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCA0" /translation="MANPATIPMTSSQSTAGSGAQSQPPIATPAFRAFLSRLTSSIRQ GLSQRRPWYELIDRSAMARPDNLTDAYSRIRKNLSYFKVNYITLLVVVLAFSLLSHPL SLLVLLGLLAAWVFLYLFRPSDQPLVLFGRTFSDRETLGALVVLTVFVVFLTSVGSLL ISALLIGVAIVCLHGAFRVPEDLFLDDQEPANTGFLSFLGGAASSAAAAAAPAVASRV " gene 476545..480467 /locus_tag="TCM_042427" /note="dbxref CacaoGD:Thecc1EG042427" mRNA join(476545..477125,477344..479302,479389..480467) /locus_tag="TCM_042427" /product="Inflorescence meristem receptor-like kinase 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g42920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021594t8" /inference="similar to AA sequence:Phytozome:POPTR_0010s19070.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg285t1" mobile_element 476687..476759 /note="source:scaffold_9_CACTA_0946 4474 4552" /mobile_element_type="transposon:TIR/CACTA" CDS join(477370..479302,479389..480011) /locus_tag="TCM_042427" /note="paralog of Thecc1EG021594t8" /codon_start=1 /product="Inflorescence meristem receptor-like kinase 2" /protein_id="EOY17658.1" /db_xref="Phytozome:POPTR_0010s19070.1" /db_xref="TAIR:AT3G51740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCA0" /translation="MAIEKQDFEFLICRDVDWRCISNKKKEKWKDVSLFSYIFLLLQL LGCFFIQPVSSQAWDGVIVTAADFQALQAFKQELIDPKGFLKSWNDSGYGACSGGWVG IKCAQGQVIVIQLPWKGLGGRITEKIGQFQALRKLSLHDNLIGGSIPRALGILPDLRG VQLFNNRLSGSIPASLGSCPLLQTLDLSNNSLTGTIPESLANSTKLFRLNVSFNSLSG SIPVSFTHSTSLIFLALQHNNLSGSIPDSWGATQKNSFYQLQYLTLDHNFLSGSIPAS LGKLSELQEVSLSHNLITGPIPSDMGSLSVLRNLDLSNNAINESLPATLSKLSSLVLL NLESNDLENQIPESIDSLHNLSVLVLKSNKFSGPIPATLGNISSLTQLDLSENTLNGE IPFSLADLKGLNSLNVSYNNLSGPVPTPLSQKFNSSSFVGNIQLCGYPGSTPCPAPAP SQNVPSSPSEKSKHKHRKLNTKDIILIAAGALLIVLLVLCFVLLCCLIKRRATSKAKN GQTTGAAAAARGEKGTPAAGGEVEAGGEAGGKLVHFDGPMVFTADDLLCATAEIMGKS TYGTVYKATLEDGNQVAVKRLREKITKGEREFENEVNVLGKIRHLNLLALRAYYLGPK GEKLLVFDYMPKGSLATFLHARGPDTPIDWPTRMRIAKGVTRGLLYLHTQENIIHGNL TSSNVLLDEDTTAKIADFGLSRLMTDAANANVIATAGALGYRAPELSKLKKANTKTDV YSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDAPSIGDELL NTLKLALHCVDPSPSARPEVQHVLQQLEEIRLETPASSGPSGDDGAAGPSTSE" gene 484093..487597 /locus_tag="TCM_042428" /note="dbxref CacaoGD:Thecc1EG042428" mRNA join(484093..484404,484555..484706,485004..485248, 485358..485486,485983..486942,487038..487597) /locus_tag="TCM_042428" /product="Laccase 12" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042229t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19090.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc348t3" CDS join(484300..484404,484555..484706,485004..485248, 485358..485486,485983..486942,487038..487168) /locus_tag="TCM_042428" /note="paralog of Thecc1EG042229t1" /codon_start=1 /product="Laccase 12" /protein_id="EOY17659.1" /db_xref="Phytozome:POPTR_0010s19090.1" /db_xref="TAIR:AT5G05390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GUI5" /translation="METFKDFSIIFVGLFLLICSALCLANAEVQQHQFVIQATPVKRL CKTHSSITVNGMFPGPTLEVKDGDTLEVKVINKARYNVTIHWHGIRQMRTGWADGPEF VTQCPIRPGGSYTYRFTIQGQVGTLWWHAHSSWLRATVYGALIIRPKEGESYPFPKPK RETPILLGEWWDANPIDVVREATRTGASPNISDAYTINGQPGDLYICSSKDTTIVPID SGETNLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTSVIMLGPGQTTDVLIR GDQAPAQYYMAARAYQSAQNAPFDNTTTTAILEYKSAPCPAKKGLAPKPIMPSLPAYN DTNTVTAFSRSFRSPQKVEVPTDIDESLFFTVGLGLNNCPPNFHKSRCQGPNGTRFTA SMNNVSFVLPGNFSLLQAHQQGIPGVFTTDFPGTPPVIFDYTGNVSQSLFQPVTGTKL YKLKYGSRVQIVIQDTSIVTPENHPIHLHGYDFYIIAEGFGNFNPQKDTSKFNLVDPP LRNTVAVPVNGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVENGFGELQTLQAP PPDLPIC" gene complement(487667..491478) /locus_tag="TCM_042429" /note="dbxref CacaoGD:Thecc1EG042429" mRNA complement(join(487667..489040,489140..490135, 490336..490563,491378..491478)) /locus_tag="TCM_042429" /product="K(+)/H(+) antiporter, putative" /inference="alignment:exonerate-protein:2:frave:gene21278" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042430t1" /inference="similar to AA sequence:ricco:29711.m000324" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS complement(join(487895..489040,489140..490135, 490336..490554)) /locus_tag="TCM_042429" /note="dbxref ricco:29711.m000324; paralog of Thecc1EG042430t1" /codon_start=1 /product="K(+)/H(+) antiporter, putative" /protein_id="EOY17660.1" /db_xref="TAIR:AT2G13620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9STD0" /translation="MASGSVNKTVLYPQVCVLYNKNMHYQGVFASGNPLDYIVPVFML QVILSVVISRVIYIVLRPLKQPKLVCNILAGIILGPSVLGRNKSYMERMFAPKEMMVL GTMSNMATTLYIFIICIKMDATMLSRTSKKTWRFGLSCTIIPFFFTMILTELLRHFLP GFRDSQFFPIQFSVVSSLSYFIVIVHALDELDLLSSELGQLSTSITLLNELVSCMIVM LGITLGQKDTIHMMYSFLSLCGLIAFAIFVIRPVLHWIIKRTPRGSPVNEGYVIAILL WTLLLGVTTDALGGSFSPAAMIMGLIIPDGPPLGATIIQKSELLISEFFLPLFFVRIG YFTNLSAIQDWTELVIFGALILVGYLGKLVGSCLVSSTINMRKSTAILLSLILSLQGV NELLNGVRWKHQKLLDEQNFATFVLSIVILNGIITPIIEIFYKPEVKTFDPSSVKLHS RSLGMTSSVGELRIISCVEDEDNVPSFTSLLEALNPTEVNPICAYVIHLVPLSTQTVP LLVPYKSHKRRFSTPNGSDSIMRAFLNYSQNSQGPVHIQPFRMISPFKYMHEPICRLA EAIRTPLVLVPFFKSQEVHSIEGSLRIFNTNIQQFSRCTVGILVDRGLRTHISVNSFS YNVAVIFLGGADDREVLAFAARMSSHPNIAITVLRIHLRGNCARGFEDERELDDSLFR DFKAMNVGNACVVCHEMVADNSEEVMIALGSLANCYNLVIVGKRQGCNSQFEEGLIAW TQYPELGVIGDAMAAPDFCGGMMSVLVLQHFGERNQNSTRFTSFDC" gene complement(491529..495910) /locus_tag="TCM_042430" /note="dbxref CacaoGD:Thecc1EG042430" mRNA complement(join(491529..493004,493123..494112, 494256..494895,495383..495910)) /locus_tag="TCM_042430" /product="K(+)/H(+) antiporter, putative" /inference="alignment:exonerate-protein:2:frave:gene21278" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042429t1" /inference="similar to AA sequence:ricco:29711.m000324" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg288t1" CDS complement(join(491847..493004,493123..494112, 494256..494462)) /locus_tag="TCM_042430" /note="dbxref ricco:29711.m000324; paralog of Thecc1EG042429t1" /codon_start=1 /product="K(+)/H(+) antiporter, putative" /protein_id="EOY17661.1" /db_xref="TAIR:AT2G13620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9STD0" /translation="MAINETIYPKLCILYERNMYSKGIWYGENPLDYFIPLAMFQIIL FFILSRAVYFLLRPLKQPKVVCNVLTGLLLGPSVLGRYTTLMDNLYPAKEMLAVNTLC LFSNISFIFLITVKTDTRMIFRTARDDWSLGLLSILVPLGISYTLFNLLRDFLPGFQG GIAAFTVCGIMSTSFLSDVAYGMDELKLLTSELGQLAMSSAMINDLVGWAIVATLIMS SQTKSLSIEAMLSFAAFPIFALYAVRPTISWIIRTTPEGKQVDQLYVVATLLGAFAMG AISDAIGLSFLPGIIAMGLIVPNGPPLGAAIVEKSELIINEFFMPFFYLRLGRLANIV EIRDWKEFNALLLIIITGFLAKLLSVCLHSCFCKMRVRYVLLLSSMLNVKGVLKFIYF IRFLTKRRIDEQSFVLLILSNLTVTAIAMPLIEYFYKPHLRLETSLSAKLSTMSLHST SSFGELRILLCIHNEDDVHGIITLLEASNPTPVSTICAYVVHLVELVGRATPLLAPYK KVGRNRTDRIMRAFTNYSKTSEQSVTVQPYTSIAPYKTMYENVCRLAQAKHVPLIIVP FHKSQVGEINASFRCFNVQTQAYAPCTVGILVQRGLSCVTCAEFSCNIAVLFVGGPDD REALALAARMSGHPRVQITVMRIIVRENVHQSELEQQLDDKLLTEFKAKTENYNFVQC LEVQVNNSVEILSWIRSLENKYDLVMVGKRQGSNLELEGDMATWIEHPELGVLGDMVA SEDFRRGTVSVLVLQHCMVGETSKNRSSSQRRRYSIGSFSALLK" gene 495566..503373 /locus_tag="TCM_042431" /note="dbxref CacaoGD:Thecc1EG042431" mRNA join(495566..496164,496933..497001,497609..497853, 498330..499766,499956..500093,500606..502553, 503152..503290) /locus_tag="TCM_042431" /product="Chromatin remodeling complex subunit isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002291" /inference="similar to AA sequence:ricco:29729.m002291" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc474t4" mRNA join(495651..496164,496933..497001,497609..497853, 498330..499766,499956..500093,500606..502553, 503156..503373) /locus_tag="TCM_042431" /product="Chromatin remodeling complex subunit isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002291" /inference="similar to AA sequence:ricco:29729.m002291" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc480t4; alternateUTRof:Thecc1EG042431t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc474t4" CDS join(496953..497001,497609..497853,498330..499766, 499956..500093,500606..502522) /locus_tag="TCM_042431" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29729.m002291" /codon_start=1 /product="Chromatin remodeling complex subunit isoform 1" /protein_id="EOY17662.1" /db_xref="TAIR:AT5G20420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHV5" /translation="MRKRQLYQSKHPFNTYPFEVLFCGSWQAVELIRIKNGVMTMHLI DDQYLIEKQPFSDFRVKSRQATLSDCTCFLRPGIDVCILSASPLTGINEENPEPVWVD AKISSIERKPHNSQCSCQFYVNLYVNQGPLGSEKVILSKETEVVGIDQISVLQRLEKH ACDDQHYGWNFSEDCSELRRTKIFLGKFLSDISWLLVTSVLKRIAFDVRSVQNKIVYQ ILGEDDSSPLNSHNYLHAVNFKVDNGISVSDVVRLDPHQNNEAGAACSAHEIRQWPVY DAMNLRRSKRRNVQPERFLGCDSSLETDISWVRTAPLRTGNWREEEEEQELEEDMNLP LSYLFGMNASTSKELTQCETSDVCKSKNISREFKSDVAGPRKSSVNYPRRSGATNPRK HQNSLAIVPVSSESDPLASGHCHAPKFPRSHAEEVEKVSLNYYSVKRSRTTHRKKIPA LEYMDYESTWKGRSFSKKGQNKSHRSVHTRKEDYDEPITYKRTTISAGAYNKLINSYM KNIDSTFTKEEPHIIDQWNQFKEAASSEMSRKTEPEQPSVEDEGDMSDTEILWREMEL CMASAYFEEDEARVSAESLRKSSGNCQHDFKLDEEIGVLCRICGFVRTEIKYVSAPFL EHKSWIADGKVCSEEEPEHKTDGDEALNLFCNYTSIDTPLSEENDNVWALIPELKKKL HFHQKRAFEFLWQNVAGSLTPALMETASKKTGGCVVSHSPGAGKTLLIIAFLTSYLKL FPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVHLIHGRRTYRVFKKQSVRLHGAPKPSQ DVMHVLDCLEKIQKWHAQPSVLVMGYTSFLTLMREDSKFEHRKFMAKVLRESPGLLVL DEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPKFVYEVLRE LDPKSKKKKSQFDKARNLLENRARKFFIDKIARKIDSSEGEERLHGLNMLRNITNGFI DVYEGGNSDSLPGLQIYTLMMNSTDVQHEILVKLHKIMAGYSGYPLELELLITLASIH PSLVRTSNCVNKFFSPEELMTLEKIKFDFKKGSKVMFVLNLVYRVIKKEKVLIFCHNI APINLFIELFEIVFRWRKGREILVLTGDLELFERGRVMDKFEEPGGASRILLASITAC AEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKVVFVYQLLATGTLEEDKYRR TTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDVLREIVAEDKVKSFHMIMKNEKASTG" CDS join(496953..497001,497609..497853,498330..499766, 499956..500093,500606..502522) /locus_tag="TCM_042431" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002291" /codon_start=1 /product="Chromatin remodeling complex subunit isoform 1" /protein_id="EOY17663.1" /db_xref="TAIR:AT5G20420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHV5" /translation="MRKRQLYQSKHPFNTYPFEVLFCGSWQAVELIRIKNGVMTMHLI DDQYLIEKQPFSDFRVKSRQATLSDCTCFLRPGIDVCILSASPLTGINEENPEPVWVD AKISSIERKPHNSQCSCQFYVNLYVNQGPLGSEKVILSKETEVVGIDQISVLQRLEKH ACDDQHYGWNFSEDCSELRRTKIFLGKFLSDISWLLVTSVLKRIAFDVRSVQNKIVYQ ILGEDDSSPLNSHNYLHAVNFKVDNGISVSDVVRLDPHQNNEAGAACSAHEIRQWPVY DAMNLRRSKRRNVQPERFLGCDSSLETDISWVRTAPLRTGNWREEEEEQELEEDMNLP LSYLFGMNASTSKELTQCETSDVCKSKNISREFKSDVAGPRKSSVNYPRRSGATNPRK HQNSLAIVPVSSESDPLASGHCHAPKFPRSHAEEVEKVSLNYYSVKRSRTTHRKKIPA LEYMDYESTWKGRSFSKKGQNKSHRSVHTRKEDYDEPITYKRTTISAGAYNKLINSYM KNIDSTFTKEEPHIIDQWNQFKEAASSEMSRKTEPEQPSVEDEGDMSDTEILWREMEL CMASAYFEEDEARVSAESLRKSSGNCQHDFKLDEEIGVLCRICGFVRTEIKYVSAPFL EHKSWIADGKVCSEEEPEHKTDGDEALNLFCNYTSIDTPLSEENDNVWALIPELKKKL HFHQKRAFEFLWQNVAGSLTPALMETASKKTGGCVVSHSPGAGKTLLIIAFLTSYLKL FPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVHLIHGRRTYRVFKKQSVRLHGAPKPSQ DVMHVLDCLEKIQKWHAQPSVLVMGYTSFLTLMREDSKFEHRKFMAKVLRESPGLLVL DEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPKFVYEVLRE LDPKSKKKKSQFDKARNLLENRARKFFIDKIARKIDSSEGEERLHGLNMLRNITNGFI DVYEGGNSDSLPGLQIYTLMMNSTDVQHEILVKLHKIMAGYSGYPLELELLITLASIH PSLVRTSNCVNKFFSPEELMTLEKIKFDFKKGSKVMFVLNLVYRVIKKEKVLIFCHNI APINLFIELFEIVFRWRKGREILVLTGDLELFERGRVMDKFEEPGGASRILLASITAC AEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKVVFVYQLLATGTLEEDKYRR TTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDVLREIVAEDKVKSFHMIMKNEKASTG" mobile_element complement(503634..503679) /note="source:CACAO_M_E50918_F318_scaffold_7 2448 2496" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 508220..509462 /locus_tag="TCM_042432" /note="dbxref CacaoGD:Thecc1EG042432" mRNA 508220..509462 /locus_tag="TCM_042432" /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021605t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13320.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11261t00001" CDS 508325..508972 /locus_tag="TCM_042432" /note="paralog of Thecc1EG021605t1" /codon_start=1 /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /protein_id="EOY17664.1" /db_xref="Phytozome:POPTR_0016s13320.1" /db_xref="TAIR:AT2G38310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGH2" /translation="MPSSLQLHRAVSATTTIGCHQKQVQPTTACTLTRILPLPCGFSV PDTVATYHIHTVGPNQCCSAVVQAIEAPVETVWSVVRRFDNPQAYKHFLKSCHVIVGD GNVGTLREVHVVSGLPAASSTERLEILDDERHVLSFSVVGGDHRLTNYKSVTTLHASP NGKGTVVVESFVVDIPPGNTSDDTWIFVDTIVRCNLQSLAQMAENMARRAKPSSP" mobile_element 509467..509512 /note="source:scaffold_6_CACTA_0716 6737 6784" /mobile_element_type="transposon:TIR/CACTA" gene complement(510996..511896) /locus_tag="TCM_042433" /note="dbxref CacaoGD:Thecc1EG042433" mRNA complement(510996..511896) /locus_tag="TCM_042433" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" mobile_element 511111..511161 /note="source:CACAO_Mutator_E1149_scaffold_5 4712 4762" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(511119..511161) /note="source:CACAO_PIF_E144_scaffold_10 5999 6041" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 511162..511179 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5695 5756" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(511243..511608) /locus_tag="TCM_042433" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17665.1" /translation="MLIQESIGSKKTGFFFLNKTTCLKPVAAHVNFRISILEVCMSKV AVAAAAAVAALSPSSNLQSFQPLNINNNILRKALLAWKYFLSFFLSLSSCRQEPRVGG ATTWFSEQIPAVSTVKKSA" gene complement(511994..518378) /locus_tag="TCM_042434" /note="dbxref CacaoGD:Thecc1EG042434" mRNA complement(join(511994..513059,513472..513630, 513721..513920,514012..514189,514785..515001, 515128..515306,518251..518378)) /locus_tag="TCM_042434" /product="Trichome birefringence-like 33 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002289" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042435t1" /inference="similar to AA sequence:ricco:29729.m002289" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc403t5" mRNA complement(join(511994..513059,513472..513630, 513721..513920,514012..514189,514271..514421)) /locus_tag="TCM_042434" /product="Trichome birefringence-like 33 isoform 4" /inference="alignment:exonerate- protein:2:ricco:29729.m002289" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042435t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032748001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:PASA:2:TSA:puevd3b040956t1a3; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc403t5" mRNA complement(join(512354..513059,513472..513630, 513721..513920,514012..514189,514785..514996, 515128..515498)) /locus_tag="TCM_042434" /product="Trichome birefringence-like 33 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29729.m002289" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042435t1" /inference="similar to AA sequence:ricco:29729.m002289" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc419t2_C1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc403t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc421t5_C1" mRNA complement(join(512541..513059,513472..513630, 513721..513920,514012..514189,514785..515153)) /locus_tag="TCM_042434" /product="Trichome birefringence-like 33 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29729.m002289" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042435t1" /inference="similar to AA sequence:ricco:29729.m002289" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc403t7; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc403t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc421t5_C1" CDS complement(join(512720..513059,513472..513630, 513721..513920,514012..514189,514785..515001, 515128..515306,518251..518303)) /locus_tag="TCM_042434" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29729.m002289; paralog of Thecc1EG042435t1" /codon_start=1 /product="Trichome birefringence-like 33 isoform 1" /protein_id="EOY17666.1" /db_xref="TAIR:AT2G40320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XEF9" /translation="MAYFSNFVHSKLISKKDRKMKPPLPSSSSAVLRKARLSPYLFTL LAFIVFVAILYGEDFMCIFGQLEPIPGRPISRPVKKREKLPFAVGKTEEGCDMFSGRW VRDELTRPHYDESECPYIQPQLTCQEHGRPDREYQKWRWQPHACDLPSFNATLMLETL RGKRMMFVGDSLNRGQYVSMICLLHRLLPKDGKSMKTYNNDALTVFRAKDYNATIEFY WAPFLLESNSDNAIVHRISDRIVRKGSINKHGKHWKGVDILVFNSYLWWMTGLEMKIL KGSFEDEEKEIMVVSTEDAYRMAMRTLLRWVRKNMDRKKTRVFFTSMSPTHAKSIDWA GEPGENCYNQTTLIEDPNYWGSDSRKSIMKVIGEVFSKSKFPITFLNITQLSSYRKDA HTSIYKKQWNPLTPEQLANPVSYADCVHWCLPGLQDTWNELLFAKLFYP" CDS complement(join(512720..513059,513472..513630, 513721..513920,514012..514189,514785..514996, 515128..515196)) /locus_tag="TCM_042434" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002289; paralog of Thecc1EG042435t1" /codon_start=1 /product="Trichome birefringence-like 33 isoform 2" /protein_id="EOY17667.1" /db_xref="TAIR:AT2G40320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRL3" /translation="MGKTSCAFSDSLNQSQADQSLDQKREKLPFAVGKTEEGCDMFSG RWVRDELTRPHYDESECPYIQPQLTCQEHGRPDREYQKWRWQPHACDLPSFNATLMLE TLRGKRMMFVGDSLNRGQYVSMICLLHRLLPKDGKSMKTYNNDALTVFRAKDYNATIE FYWAPFLLESNSDNAIVHRISDRIVRKGSINKHGKHWKGVDILVFNSYLWWMTGLEMK ILKGSFEDEEKEIMVVSTEDAYRMAMRTLLRWVRKNMDRKKTRVFFTSMSPTHAKSID WAGEPGENCYNQTTLIEDPNYWGSDSRKSIMKVIGEVFSKSKFPITFLNITQLSSYRK DAHTSIYKKQWNPLTPEQLANPVSYADCVHWCLPGLQDTWNELLFAKLFYP" CDS complement(join(512720..513059,513472..513630, 513721..513920,514012..514189,514785..514945)) /locus_tag="TCM_042434" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29729.m002289; paralog of Thecc1EG042435t1" /codon_start=1 /product="Trichome birefringence-like 33 isoform 3" /protein_id="EOY17668.1" /db_xref="TAIR:AT2G40320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XEF9" /translation="MFSGRWVRDELTRPHYDESECPYIQPQLTCQEHGRPDREYQKWR WQPHACDLPSFNATLMLETLRGKRMMFVGDSLNRGQYVSMICLLHRLLPKDGKSMKTY NNDALTVFRAKDYNATIEFYWAPFLLESNSDNAIVHRISDRIVRKGSINKHGKHWKGV DILVFNSYLWWMTGLEMKILKGSFEDEEKEIMVVSTEDAYRMAMRTLLRWVRKNMDRK KTRVFFTSMSPTHAKSIDWAGEPGENCYNQTTLIEDPNYWGSDSRKSIMKVIGEVFSK SKFPITFLNITQLSSYRKDAHTSIYKKQWNPLTPEQLANPVSYADCVHWCLPGLQDTW NELLFAKLFYP" CDS complement(join(512720..513059,513472..513630, 513721..513920,514012..514189,514271..514353)) /locus_tag="TCM_042434" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042435t1" /codon_start=1 /product="Trichome birefringence-like 33 isoform 4" /protein_id="EOY17669.1" /db_xref="Phytozome:GSVIVT01032748001" /db_xref="TAIR:AT2G40320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XEF9" /translation="MSQSMWGFPLDILRRGENQGPHWEHVQSFNATLMLETLRGKRMM FVGDSLNRGQYVSMICLLHRLLPKDGKSMKTYNNDALTVFRAKDYNATIEFYWAPFLL ESNSDNAIVHRISDRIVRKGSINKHGKHWKGVDILVFNSYLWWMTGLEMKILKGSFED EEKEIMVVSTEDAYRMAMRTLLRWVRKNMDRKKTRVFFTSMSPTHAKSIDWAGEPGEN CYNQTTLIEDPNYWGSDSRKSIMKVIGEVFSKSKFPITFLNITQLSSYRKDAHTSIYK KQWNPLTPEQLANPVSYADCVHWCLPGLQDTWNELLFAKLFYP" gene complement(518427..522108) /locus_tag="TCM_042435" /note="dbxref CacaoGD:Thecc1EG042435" mRNA complement(join(518427..519174,519386..519544, 519652..519851,519970..520147,521455..521677, 521785..522108)) /locus_tag="TCM_042435" /product="Trichome birefringence-like 33" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19140.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042434t1" /inference="similar to AA sequence:ricco:29729.m002289" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc2929t4_C1" CDS complement(join(518838..519174,519386..519544, 519652..519851,519970..520147,521455..521677, 521785..521962)) /locus_tag="TCM_042435" /note="dbxref ricco:29729.m002289; paralog of Thecc1EG042434t1" /codon_start=1 /product="Trichome birefringence-like 33" /protein_id="EOY17670.1" /db_xref="TAIR:AT2G40320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XEF9" /translation="MKPLLSPSSSSVLRKARLSPYFYTLLAFILFVVILYSEDFLCSF GQGELVPTQPPISQTEKKQETTSLPFVIGRTEEGCDVFSGRWVRDEFARPHYEESECP YIQPQLTCQEHGRPDKEYQKWRWQPHGCDLPSFNATLMLEALRGKRMMFVGDSLNRGQ YVSMVCLLHRILPENAKSMETSPDQSLVVFRAKDYNATIEFNWAPFLLESNSDNAIVH RVAERMVKKGSINKHGKNWKGVDVLVFNTYLWWMTGQKMKFLKGSFDDEKKDIEELTT EEAYRVAMKSMLKWVRKNMDRNKTRVFFTSMSPLHIKSTEWGGEPGGNCYNETTLIED PNYWGSESKSVMQVIGEEFSKSKYPITFLNITQLSNYRKDAHTSIYKKQWSPLTPEQL ANPVSYADCVHWCLPGLQDTWNELLFAKLFYP" gene 522733..532145 /locus_tag="TCM_042436" /note="dbxref CacaoGD:Thecc1EG042436" mRNA join(522733..523947,530096..532145) /locus_tag="TCM_042436" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT4G01350.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042871t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04640.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg454t7" CDS join(523233..523947,530096..531582) /locus_tag="TCM_042436" /note="paralog of Thecc1EG042871t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY17671.1" /db_xref="Phytozome:POPTR_0016s04640.1" /db_xref="TAIR:AT5G59920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MEPLQHFSHGHPLIFNEEQSHESEEQAYCSGCGKLVSGPSFSCV ECGFYLDKKCAEAPSQLNHPFHRNHSLNLLASSPYDASLSIICDFCDEICDRFVYHCS CELDLHIKCALFSYNIAEKRIEEIQQISTIDPLISKENGDEELEGAECFACWKPLLDS VYLSPDCGFYLHAKCLDPCAVNHLPLHEHPLILQFNSERLSCKICQETQRRGFVYCCS ICKFALHIECGSPPPIIEDKINHLPLHEHPLILQFNSELLFCKICQETQLRGFVYCCS ICKFALHIECGSPPPIIEDKSHQHPFILFWRRVPFICDACGTEGNYVSYICSTCGIIV HRKCISLPRTLKHPWHFEHPISHTYFLGQDKFKSWECGICHLKDVNSKHGSYSCSICD YIVHVNCAIEQYNWYDFDESGIIDESLEENSALQPYSIIKETKDGENVIVTEIKHFGH EHNLILSNDVKDDKCCDGCVLSIFTSYYYCSQCNFFFHKSCAESPRKKRLWRHRHMKP HQLITSDGIRICDYCRNKTSGFAYTCVECNECCCLRCALISFSLKHQGHEHPLSIQKY QGLCNACGRSFKFAYTYRCKSCNFSLHLKCMDLSHKARHKSDVHHFILTYRDDNDYSE SHYCDICEEERNPNHWFYYCAICDTSAHPRCIIGEYPFIKLGSIYTKEDHPHPLTFVQ MVYYYPECHACGELCLDLALECKTIGCNYIVHWRCEEFSLCSSDETDETNE" mobile_element complement(533614..533781) /note="source:CACAO_Mariner_E265_scaffold_10 4412 4575" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 535309..535408 /note="source:scaffold_6_CACTA_0706 1385 1485" /mobile_element_type="transposon:TIR/CACTA" mobile_element 535342..535420 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3882 3961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 536197..536397 /note="source:CACAO_M_S_E38315_F276_scaffold_4 19431 19643" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(536220..536551) /note="source:CACAO_M_E58877_F5_scaffold_9 20396 20739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 536486..539138 /note="source:CACAO_M_E44210_F112_scaffold_5 10300 12913" /mobile_element_type="retrotransposon:LTR/Copia" gene 539506..543418 /locus_tag="TCM_042438" /note="dbxref CacaoGD:Thecc1EG042438" mRNA join(539506..540991,543287..543418) /locus_tag="TCM_042438" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042436t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg464t1" CDS 539704..540864 /locus_tag="TCM_042438" /note="paralog of Thecc1EG042436t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY17672.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT5G45730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MVHRSCISLPHILKHPGHFEHPISHTYFLGQDKFKLWECRICNL EDVNSNYGSYYCSDCEYAVHVICAIEEYNWYDFDESGIIDESLEENSALQPYSIIKEI KDGENVVAIEIKHFSHPHNLVLNNDVKDDKCCDACVLPISTSYHYCSQCNFFLHKSCA ELPRKKHLSLHSHTKPHQLTSNRIFRCALCWNETNGFAYTCAECNICYCLRCASISDS LKYEGHEHLLSYQKYEGLCNACGQSLNYAFRCKRCNFSLGEDCLELPLKARHKSDVHH FTLTHHDNDYPKSHYCDICEEKRNLNYWFYHCAICDNSAHPKCVLEKYPFIKLGNIYT EEGHPHPLTFVQKVHYYPACQRCGKPCLDMALECKTIGCSYIVHWECIKPRF" gene 545088..545612 /locus_tag="TCM_042441" /note="dbxref CacaoGD:Thecc1EG042441" mRNA 545088..545612 /locus_tag="TCM_042441" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042888t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc2318t1" CDS 545181..545513 /locus_tag="TCM_042441" /note="paralog of Thecc1EG042888t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17673.1" /translation="MNISSHSLMVIRTVIQNLIIATFVKKKEIQNIGFIIVQDVTIQL ILSVFSKNTHLSSSGAYTQKEIIHTPSLWSRRFIITQNAINVVSFVLIWLLNVKRLDA IILSIGNV" gene 545891..549465 /locus_tag="TCM_042442" /note="dbxref CacaoGD:Thecc1EG042442" mRNA join(545891..545934,547923..549465) /locus_tag="TCM_042442" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042436t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04350.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" mobile_element complement(547280..547433) /note="source:CACAO_Mariner_E265_scaffold_10 4420 4582" /mobile_element_type="transposon:TIR/Tc1-Mariner" CDS 548003..549061 /locus_tag="TCM_042442" /note="paralog of Thecc1EG042436t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY17674.1" /db_xref="Phytozome:POPTR_0016s04350.1" /db_xref="TAIR:AT5G42840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MELLQHFSHEHPLIFNERQSHESEKQADCSACGDLVSGPSFSCE ECGFYLDKKCAEAPSQLNHPLHRKHCLDLQARPPYEGAFFFCQFCFKKCEKFLYDCSC GLLFHIKCALFSYNIAEKRIGELQQIARINPLISTENGNEELKKAKCFACWKPFLDSV YLSPDCGFYLNAKCADLPAEINHLFHREHSLILQFCDEYFDDFSQHLPCNVCQVTQRK GFVYCCSICKFALHIECASPPPPIIKDKNHQHPFIRFRIRFPFICDACGSSGNHVSYI CSTCETIIHRSCISLPRILRHPWHFEHPISHTYSVGQDKFKSWECRICHLEDVNSKYG SYSCSDYDYIVHVNCAIE" mobile_element 552777..552918 /note="source:scaffold_10_CACTA_0140 6210 6354" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(553114..553197) /note="source:scaffold_5_CACTA_0614 3385 3470" /mobile_element_type="transposon:TIR/CACTA" mobile_element 553186..553344 /note="source:scaffold_9_CACTA_0943 5684 5858" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(553202..553680) /note="source:scaffold_2_CACTA_0244 12399 12895" /mobile_element_type="transposon:TIR/CACTA" mobile_element 553252..553743 /note="source:CACAO_M_E4753_F17_scaffold_2 7313 7814" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(554091..558697) /locus_tag="TCM_042443" /note="dbxref CacaoGD:Thecc1EG042443" mRNA complement(join(554091..554606,554709..554756, 554888..554966,555068..555156,556065..556103, 556215..556321,556610..556666,557225..557288, 557420..557473,557719..557775,558393..558673)) /locus_tag="TCM_042443" /product="Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032749001" /inference="similar to AA sequence:Phytozome:GSVIVT01032749001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b040967t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc157t7" mRNA complement(join(554091..554606,554709..554756, 554888..554966,555068..555156,556065..556103, 556215..556321,556610..556666,557225..557288, 557420..557473,557733..557775,558393..558636)) /locus_tag="TCM_042443" /product="Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032749001" /inference="similar to AA sequence:Phytozome:GSVIVT01032749001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc157t7" mRNA complement(join(554103..554505,554664..554966, 555068..555156,556065..556103,556215..556321, 556610..556666,557225..557288,557420..557473, 557733..557775,558393..558682)) /locus_tag="TCM_042443" /product="Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032749001" /inference="similar to AA sequence:Phytozome:GSVIVT01032749001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc157t5_C1; alternateUTRof:Thecc1EG042443t5; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc157t7" mRNA complement(join(554155..554606,554709..554966, 555068..555156,556065..556103,556215..556321, 556610..556666,557225..557288,557420..557473, 557733..557775,558393..558697)) /locus_tag="TCM_042443" /product="Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032749001" /inference="similar to AA sequence:Phytozome:GSVIVT01032749001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc158t7; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc157t7" mRNA complement(join(554479..554756,554888..554966, 555068..555156,556065..556103,556215..556321, 556610..556666,557225..557288,557420..557473, 557733..557775,558393..558682)) /locus_tag="TCM_042443" /product="Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032749001" /inference="similar to AA sequence:Phytozome:GSVIVT01032749001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc157t4; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc157t7" mRNA complement(join(554479..554606,554709..554756, 554888..554966,555062..555156,556065..556103, 556215..556321,556610..556666,557225..557288, 557420..557473,557733..557775,558393..558682)) /locus_tag="TCM_042443" /product="Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032749001" /inference="similar to AA sequence:ricco:29729.m002288" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc157t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc157t7" CDS complement(join(554526..554606,554709..554756, 554888..554966,555068..555156,556065..556103, 556215..556321,556610..556666,557225..557288, 557420..557473,557733..557775,558393..558580)) /locus_tag="TCM_042443" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 1" /protein_id="EOY17675.1" /db_xref="Phytozome:GSVIVT01032749001" /db_xref="TAIR:AT2G40316.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHV2" /translation="MVIRNEPRRLLLLLVNLLLTIQLRVNSVTGLCELSFVERNKLYN FSLASPLPRFPYGVLSEDGFYKVVMNESVLWFQLCDGMLFNHDPPRCVECLDCGGPSR CGMECSALVAKNALGYQVCTTIGHVSSTNVSVIDEQNPYKGVIVRMSSSGKGRNCSLS VSIICDSTGVQGPNSMEKLGTCDYATVLRHPSGCATIISFHEKGFGWFCTLMTIILCL FGAYLLAGTVYRFFFLGVRGVEVIPNLEFWASLQHRTQSFFSSLVRKFSGPSAGHRSS YSRVNF" CDS complement(join(554526..554606,554709..554756, 554888..554966,555068..555156,556065..556103, 556215..556321,556610..556666,557225..557288, 557420..557461)) /locus_tag="TCM_042443" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 3" /protein_id="EOY17677.1" /db_xref="Phytozome:GSVIVT01032749001" /db_xref="TAIR:AT2G40316.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHV2" /translation="MLFNHDPPRCVECLDCGGPSRCGMECSALVAKNALGYQVCTTIG HVSSTNVSVIDEQNPYKGVIVRMSSSGKGRNCSLSVSIICDSTGVQGPNSMEKLGTCD YATVLRHPSGCATIISFHEKGFGWFCTLMTIILCLFGAYLLAGTVYRFFFLGVRGVEV IPNLEFWASLQHRTQSFFSSLVRKFSGPSAGHRSSYSRVNF" CDS complement(join(554652..554756,554888..554966, 555068..555156,556065..556103,556215..556321, 556610..556666,557225..557288,557420..557473, 557733..557775,558393..558580)) /locus_tag="TCM_042443" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 4" /protein_id="EOY17678.1" /db_xref="Phytozome:GSVIVT01032749001" /db_xref="TAIR:AT2G40316.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHV2" /translation="MVIRNEPRRLLLLLVNLLLTIQLRVNSVTGLCELSFVERNKLYN FSLASPLPRFPYGVLSEDGFYKVVMNESVLWFQLCDGMLFNHDPPRCVECLDCGGPSR CGMECSALVAKNALGYQVCTTIGHVSSTNVSVIDEQNPYKGVIVRMSSSGKGRNCSLS VSIICDSTGVQGPNSMEKLGTCDYATVLRHPSGCATIISFHEKGFGWFCTLMTIILCL FGAYLLAGTVYRFFFLGVRGVEVIPNLEFWASLQHRTQVPLVSWYIQPVSSTQVIT" CDS complement(join(554753..554966,555068..555156, 556065..556103,556215..556321,556610..556666, 557225..557288,557420..557473,557733..557775, 558393..558580)) /locus_tag="TCM_042443" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 5" /protein_id="EOY17679.1" /db_xref="Phytozome:GSVIVT01032749001" /db_xref="TAIR:AT2G40316.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHV2" /translation="MVIRNEPRRLLLLLVNLLLTIQLRVNSVTGLCELSFVERNKLYN FSLASPLPRFPYGVLSEDGFYKVVMNESVLWFQLCDGMLFNHDPPRCVECLDCGGPSR CGMECSALVAKNALGYQVCTTIGHVSSTNVSVIDEQNPYKGVIVRMSSSGKGRNCSLS VSIICDSTGVQGPNSMEKLGTCDYATVLRHPSGCATIISFHEKGFGWFCTLMTIILCL FGAYLLAGTVYRFFFLGVRGVEVSFSSEVICLLLKFRFCMKVEDFGNLGPLTILLTML CPCSAFFR" CDS complement(join(554753..554966,555068..555156, 556065..556103,556215..556321,556610..556666, 557225..557288,557420..557473,557733..557775, 558393..558580)) /locus_tag="TCM_042443" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 5" /protein_id="EOY17680.1" /db_xref="Phytozome:GSVIVT01032749001" /db_xref="TAIR:AT2G40316.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHV2" /translation="MVIRNEPRRLLLLLVNLLLTIQLRVNSVTGLCELSFVERNKLYN FSLASPLPRFPYGVLSEDGFYKVVMNESVLWFQLCDGMLFNHDPPRCVECLDCGGPSR CGMECSALVAKNALGYQVCTTIGHVSSTNVSVIDEQNPYKGVIVRMSSSGKGRNCSLS VSIICDSTGVQGPNSMEKLGTCDYATVLRHPSGCATIISFHEKGFGWFCTLMTIILCL FGAYLLAGTVYRFFFLGVRGVEVSFSSEVICLLLKFRFCMKVEDFGNLGPLTILLTML CPCSAFFR" CDS complement(join(555064..555156,556065..556103, 556215..556321,556610..556666,557225..557288, 557420..557473,557733..557775,558393..558580)) /locus_tag="TCM_042443" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002288" /codon_start=1 /product="Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 2" /protein_id="EOY17676.1" /db_xref="TAIR:AT2G40316.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S471" /translation="MVIRNEPRRLLLLLVNLLLTIQLRVNSVTGLCELSFVERNKLYN FSLASPLPRFPYGVLSEDGFYKVVMNESVLWFQLCDGMLFNHDPPRCVECLDCGGPSR CGMECSALVAKNALGYQVCTTIGHVSSTNVSVIDEQNPYKGVIVRMSSSGKGRNCSLS VSIICDSTGVQGPNSMEKLGTCDYATVLRHPSGCATIISFHEKGFGWFCTLMTM" gene 558856..563178 /locus_tag="TCM_042444" /note="dbxref CacaoGD:Thecc1EG042444" mRNA join(558856..559266,559520..559756,560073..560333, 560637..560716,560825..560930,561034..561147, 561296..561394,561547..561636,561723..561829, 561912..562055,562327..563178) /locus_tag="TCM_042444" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07310.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s07310.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7768t3" CDS join(559000..559266,559520..559756,560073..560333, 560637..560716,560825..560930,561034..561147, 561296..561394,561547..561636,561723..561829, 561912..562055,562327..562597) /locus_tag="TCM_042444" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY17681.1" /db_xref="Phytozome:POPTR_0008s07310.1" /db_xref="TAIR:AT5G05450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLB0" /translation="MDSPNPSGALTGTRFSDLKPPLSEPVIEALSQSGFTFCTPVQAA TIPLLCSFKDVAVDAATGSGKTLAFLIPVVEILRRSSTSPPKRHQVMGLIISPTRELS SQIYNVAQPLISTLSNVKSMLLVGGVEVKADMKKIEEEGANLLIGTPGRLYDIMDRMD VLDFRNLEILILDEADRLLDMGFQKQINYIISRLPKLRRTGLFSATQTEAVEELSKAG LRNPVRVEVKAEMKSLNNSASSKQLASSKTPSSLHLEYLECEADKKPSQLVDLLIKNK SKKIIIYFMTCACVDYWGVVLPRLTALKGFSLISLHGKMKQTAREKALAAFTSLSSGI LLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGRQGSAIVFLLPKEEAY VEFLRIRRVPLQERKCIDDASDVVPQIRSAAMKDRDVMEKGLRAYVSYIRAYKEHHCS YIFRWKELEVGKLGMGYGLLQLPSMPEVKHHSLSAEGFTPVENVNRDDIKYKDKSREK QRKKNLQAKKERKQQESKPQKPKKDSNAAAPVMKKKTAKQRRAAQTIEDEEELTREYR LLKKLKKGAIDESEFAKLTGTEDLL" gene 563182..568374 /locus_tag="TCM_042445" /note="dbxref CacaoGD:Thecc1EG042445" mRNA join(563182..563911,564296..564433,564620..564729, 564816..564927,565006..565113,565615..565727, 565926..566007,566163..566243,566355..566410, 566498..566633,566841..568374) /locus_tag="TCM_042445" /product="Glycosyl hydrolase family 85" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19160.1" /inference="similar to AA sequence:ricco:29729.m002282" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc160t9" CDS join(563393..563911,564296..564433,564620..564729, 564816..564927,565006..565113,565615..565727, 565926..566007,566163..566243,566355..566410, 566498..566633,566841..567551) /locus_tag="TCM_042445" /note="dbxref ricco:29729.m002282" /codon_start=1 /product="Glycosyl hydrolase family 85" /protein_id="EOY17682.1" /db_xref="TAIR:AT5G05460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JZC2" /translation="MPLKSVLLLVLRFLHPFVTRKTLKALRNCLNSILRNVKTLLKKM SVDQSEDQKLDPIPPHFDPSKPSIPISYPIKTLEDLDSGSYFTSFHYPFNKSSVPFPP NSGLAQRPRILVCHDMQGNYLDDKWVQGGDNSGAYAIWHWYLIDVFVYFSHYLVSLPP PCWTNTAHRHGVKVLGTFITELDEGKAICRKLLSTKESAQKYAERLAELAVALGFDGW LLNVEVELEVGQIPYLKEFISHLTQTMHSSLPGSLVIWYDSVTVDGDLTWQNQLNEKN KPFFDICDGIFMNYTWKEDYPKLSGTVAGDRKFDVYMGIDVFGRGTYGGGQWTTNAAL DVIKKDDVSAAIFAPGWVYEKKQAPDFQTAQNRWWDLVEKSWGIVQHYPKDLPFYSNF DQGRGYHVSIKGEQVLSSQWNNISSQTFQPFLEYADDPTSNTIEVHVDFKEASFSGGG NLTFKGTLGAKASISTRLFVGELLMGDLPVHFTYSVKSEGNSQLGLCLEFSSEMKGKK KLLLASGGTNQFSSKFSEVIVPHQPRKPDMASGWVLQESSIAMNKYTLTEIHAVCYRK QPERSESRSNTQDPAEYFAVLGHIRISTSNQNTEFPPSTSWIVEGQDVEWGGSQGSKT LSLRISWKLKDGKNSPFPRYNIYVEKLTKQSVRTLGGKLGGVQEYVGVAQVEAFYVSD LVIPSGTSGLKFIIQVCSADGASQKLDEAPFFQLNVEGQ" gene 568906..571643 /locus_tag="TCM_042446" /note="dbxref CacaoGD:Thecc1EG042446" mRNA 568906..571643 /locus_tag="TCM_042446" /product="Concanavalin A-like lectin protein kinase family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007342t1" /inference="similar to AA sequence:ricco:29804.m001538" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg327t1" CDS 569131..570879 /locus_tag="TCM_042446" /note="dbxref ricco:29804.m001538; paralog of Thecc1EG007342t1" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein" /protein_id="EOY17683.1" /db_xref="TAIR:AT5G10530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NHD6" /translation="MKLFEISSTFRFLASLALVVLQVGSQDLPQDFLNAHNAARKEVG VPYMTWDNVLEAYALNYSQGKIDDCELVHSVGPSGENLAWSSSDLSGIDAVGLWVEEK ADYDLESGVCATGGVCGHYTQVIWINSTQLGCAKVRCRNNGTFIACYYYPPGNVVGKR PTEGIESVIGVVAPSPQNQSPNIDPPKESKNRTGLVKNRTGLVIVFSIGASALIFSLC FTTWFISRRKRKRENEFDDTVFDMFFGDEFGNGMGPRKFSLNELAKVTSNFNAENKLG EGGFGSVYRGFLRDSDTYIAVKKVSRASKQGIKEYASEVKIISRLRHKNLVKLIGWCH ERGELMLVYEFMANGSLDSHIFKGKSLLTWEVRYRIVKDLASALLYLHEEGDHCVLHR DIKTSNIMLDSSFNAKLGDFGLARLVDHAKGLKKTLLAGTVGYMAPECLSSGKASKES DVYSFGVVALEIASGRRSIEPKFEESEALLLVPWVWESYGNERILDIADRKLGMAFDP KQLECLVMVGLWCAHPSHNLRPSIRQVIQVLNFEAPLPNLPGSMPIPNYNDVPITPGI GSSEPLISNITITIPR" gene complement(576302..577171) /locus_tag="TCM_042447" /note="dbxref CacaoGD:Thecc1EG042447" mRNA complement(join(576302..576715,576858..577171)) /locus_tag="TCM_042447" /product="Lateral organ boundaries domain family protein" /inference="alignment:exonerate- protein:2:ricco:29729.m002278" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042212t1" /inference="similar to AA sequence:ricco:29729.m002278" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1450t1" CDS complement(join(576362..576715,576858..577013)) /locus_tag="TCM_042447" /note="dbxref ricco:29729.m002278; paralog of Thecc1EG042212t1" /codon_start=1 /product="Lateral organ boundaries domain family protein" /protein_id="EOY17684.1" /db_xref="TAIR:AT2G30130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LBW3" /translation="MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGA SNVSKMLQELPVQQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVA QAEILCIQMQQEPMAPTPQLEQDDKSFLLHNNVVLPHHHQYLNFANSSSNVIQDSLKR ESIFGDMVS" mobile_element complement(583958..584396) /note="source:MITE_Unknow_3_4 2 481" /mobile_element_type="transposon:TIR/MITE" gene 584946..587777 /locus_tag="TCM_042448" /note="dbxref CacaoGD:Thecc1EG042448" mRNA join(584946..585194,585400..585627,586016..586099, 586189..586249,586351..586438,586826..586887, 587090..587155,587274..587337,587491..587674) /locus_tag="TCM_042448" /product="Ferritin 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19190.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021608t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19190.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc89t11; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3845t2" mRNA join(585095..585627,586016..586099,586189..586249, 586351..586438,586826..586887,587090..587155, 587274..587337,587491..587777) /locus_tag="TCM_042448" /product="Ferritin 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19190.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021608t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19190.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3845t2" CDS join(585115..585194,585400..585627,586016..586099, 586189..586249,586351..586438,586826..586887, 587090..587155,587274..587337,587491..587546) /locus_tag="TCM_042448" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021608t1" /codon_start=1 /product="Ferritin 4 isoform 2" /protein_id="EOY17686.1" /db_xref="Phytozome:POPTR_0010s19190.1" /db_xref="TAIR:AT2G40300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S756" /translation="MASTPIPKLTFYRPACLLPPRSSFTTHSFSSPTLRVSTPRNRTG AVIVCAAKGANNKPLTGVVFEPFEEVKKELDLVPKVPQVSLARQKYTDECEAAVNEQI NVEYNVSYVYHAIFAYFDRDNIALKGLAKFFKESSLEERGHAEKLMKYQNKRGGKVKL QSIVMPLSEFDHAEKGDALYAMELTLSLEKLTNAKLLNLHSVAERNHDVQLTEFIEAE YLSEQVEAIKKIAEYVAQLRRVGKGHGVWHFDQMLLHEGEEAVA" mRNA join(585123..585627,586016..586099,586189..586249, 586351..586438,586826..586887,587090..587155, 587280..587337,587491..587648) /locus_tag="TCM_042448" /product="Ferritin 4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19190.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021608t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19190.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9603t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3845t2" CDS join(585296..585627,586016..586099,586189..586249, 586351..586438,586826..586887,587090..587155, 587274..587337,587491..587546) /locus_tag="TCM_042448" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021608t1" /codon_start=1 /product="Ferritin 4 isoform 1" /protein_id="EOY17685.1" /db_xref="Phytozome:POPTR_0010s19190.1" /db_xref="TAIR:AT3G11050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S756" /translation="MLLKAAPAFSLLNPQVENQGSLFSSVSSSQSSLFSSFSSPTLRV STPRNRTGAVIVCAAKGANNKPLTGVVFEPFEEVKKELDLVPKVPQVSLARQKYTDEC EAAVNEQINVEYNVSYVYHAIFAYFDRDNIALKGLAKFFKESSLEERGHAEKLMKYQN KRGGKVKLQSIVMPLSEFDHAEKGDALYAMELTLSLEKLTNAKLLNLHSVAERNHDVQ LTEFIEAEYLSEQVEAIKKIAEYVAQLRRVGKGHGVWHFDQMLLHEGEEAVA" CDS join(585296..585627,586016..586099,586189..586249, 586351..586438,586826..586887,587090..587155, 587280..587337,587491..587546) /locus_tag="TCM_042448" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021608t1" /codon_start=1 /product="Ferritin 4 isoform 3" /protein_id="EOY17687.1" /db_xref="Phytozome:POPTR_0010s19190.1" /db_xref="TAIR:AT3G11050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S756" /translation="MLLKAAPAFSLLNPQVENQGSLFSSVSSSQSSLFSSFSSPTLRV STPRNRTGAVIVCAAKGANNKPLTGVVFEPFEEVKKELDLVPKVPQVSLARQKYTDEC EAAVNEQINVEYNVSYVYHAIFAYFDRDNIALKGLAKFFKESSLEERGHAEKLMKYQN KRGGKVKLQSIVMPLSEFDHAEKGDALYAMELTLSLEKLTNAKLLNLHSVAERNHDVQ LTEFIEAEYLSEQAIKKIAEYVAQLRRVGKGHGVWHFDQMLLHEGEEAVA" mRNA join(<585486..585627,586016..586099,586189..586249, 586351..586438,586826..586887,587090..587155, 587274..587337,587491..587745) /locus_tag="TCM_042448" /product="Ferritin 4 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19190.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021608t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19190.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03771t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3845t2" CDS join(<585488..585627,586016..586099,586189..586249, 586351..586438,586826..586887,587090..587155, 587274..587337,587491..587546) /locus_tag="TCM_042448" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021608t1" /codon_start=1 /product="Ferritin 4 isoform 4" /protein_id="EOY17688.1" /db_xref="Phytozome:POPTR_0010s19190.1" /db_xref="TAIR:AT2G40300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S756" /translation="KPLTGVVFEPFEEVKKELDLVPKVPQVSLARQKYTDECEAAVNE QINVEYNVSYVYHAIFAYFDRDNIALKGLAKFFKESSLEERGHAEKLMKYQNKRGGKV KLQSIVMPLSEFDHAEKGDALYAMELTLSLEKLTNAKLLNLHSVAERNHDVQLTEFIE AEYLSEQVEAIKKIAEYVAQLRRVGKGHGVWHFDQMLLHEGEEAVA" mobile_element 588387..588510 /note="source:scaffold_9_CACTA_0942 5244 5370" /mobile_element_type="transposon:TIR/CACTA" gene 588547..594376 /locus_tag="TCM_042449" /note="dbxref CacaoGD:Thecc1EG042449" mRNA join(588547..588828,588949..589079,589229..589316, 589816..590109,590423..590581,590759..590899, 591019..591075,591629..591767,592301..592405, 592534..592724,592974..593015,593101..593188, 593349..593762) /locus_tag="TCM_042449" /product="Histidine acid phosphatase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002276" /inference="similar to AA sequence:Phytozome:GSVIVT01032758001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8021t6" mRNA join(588777..589079,589229..589316,589816..590109, 590423..590581,590759..590899,591019..591075, 591629..591767,592301..592405,592534..592724, 592974..593011,593349..593858,594045..594129, 594206..594376) /locus_tag="TCM_042449" /product="Histidine acid phosphatase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29729.m002276" /inference="similar to AA sequence:Phytozome:GSVIVT01032758001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc542t8; alternateUTRof:Thecc1EG042449t2; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8021t6; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc489t15" mRNA join(588777..588828,588949..589079,589229..589316, 589816..590109,590423..590581,590759..590899, 591019..591075,591629..591767,592301..592405, 592534..592724,592974..593011,593349..593858, 594206..594376) /locus_tag="TCM_042449" /product="Histidine acid phosphatase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29729.m002276" /inference="similar to AA sequence:Phytozome:GSVIVT01032758001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc542t4; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8021t6; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc489t15" mRNA join(<588812..588828,588949..589079,589229..589316, 589816..590109,590423..590559,591658..591767, 592301..592405,592534..592724,592974..593015, 593101..>593124) /locus_tag="TCM_042449" /product="Histidine acid phosphatase family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29729.m002276" /inference="similar to AA sequence:Phytozome:GSVIVT01032758001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc489t15; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc489t15; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8021t6" CDS join(<588814..588828,588949..589079,589229..589316, 589816..590109,590423..590559,591658..591767, 592301..592405,592534..592724,592974..593015, 593101..>593124) /locus_tag="TCM_042449" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Histidine acid phosphatase family protein isoform 4" /protein_id="EOY17692.1" /db_xref="Phytozome:GSVIVT01032758001" /db_xref="TAIR:AT1G09870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC60" /translation="KTSPNFFLLTRLPEKMAMAAILLLILALFSNSKADQDFDVRQHL STVTRYSAVKDIVDDSFLPSDIPDGCTPIHLNLVARHGTRTPTKKRMRELEKLAAHVQ ELVKDAKEKNLSLQKVPAWLQKWESPWKGKLTGGELDIKGEEEMYQLGIRVRERFPDI FNEEYHPDVYPIKTTQVPRASASAVAFGMGLFSGKGSLGPGRHRAFAVTSESRASDLV LRFLEVFILKGYGKSLNYRMGVPLLKDVVQSMEEAIKAKEDNQAPGSYEKARLRFAHA ETVVPFSCLLGLFLEGSDFQRIQKEEPLGLPPKPPQNRNWRGSTVAPFAGNNMLVLYS CPANSSSKYFVQVLHNEHPTRMPGCGGTDFCPFEVFEERIVRPHL" CDS join(588979..589079,589229..589316,589816..590109, 590423..590581,590759..590899,591019..591075, 591629..591767,592301..592405,592534..592724, 592974..593011,593349..593448) /locus_tag="TCM_042449" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Histidine acid phosphatase family protein isoform 2" /protein_id="EOY17690.1" /db_xref="Phytozome:GSVIVT01032758001" /db_xref="TAIR:AT1G09870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC60" /translation="MAMAAILLLILALFSNSKADQDFDVRQHLSTVTRYSAVKDIVDD SFLPSDIPDGCTPIHLNLVARHGTRTPTKKRMRELEKLAAHVQELVKDAKEKNLSLQK VPAWLQKWESPWKGKLTGGELDIKGEEEMYQLGIRVRERFPDIFNEEYHPDVYPIKTT QVPRASASAVAFGMGLFSGKGSLGPGRHRAFAVTSESRASDLVLRFFDCCQTYKDFRK NHGPAVDNLKEPILTEITSALARRYEFNFTRQDISSLWFLCKQETSLLDITDQACSLF SPTEVALLEWTDDLEVFILKGYGKSLNYRMGVPLLKDVVQSMEEAIKAKEDNQAPGSY EKARLRFAHAETVVPFSCLLGLFLEGSDFQRIQKEEPLGLPPKPPQNRNWRGSTVAPF AGNNMLVLYSCPANSSSKYFVQVLHNEHPTRMPGCGGTDFCPFEVFHGHHYILAEFHS GLTPMLTQNKIFLQQEFLVR" CDS join(588979..589079,589229..589316,589816..590109, 590423..590581,590759..590899,591019..591075, 591629..591767,592301..592405,592534..592724, 592974..593011,593349..593448) /locus_tag="TCM_042449" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Histidine acid phosphatase family protein isoform 2" /protein_id="EOY17691.1" /db_xref="Phytozome:GSVIVT01032758001" /db_xref="TAIR:AT1G09870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC60" /translation="MAMAAILLLILALFSNSKADQDFDVRQHLSTVTRYSAVKDIVDD SFLPSDIPDGCTPIHLNLVARHGTRTPTKKRMRELEKLAAHVQELVKDAKEKNLSLQK VPAWLQKWESPWKGKLTGGELDIKGEEEMYQLGIRVRERFPDIFNEEYHPDVYPIKTT QVPRASASAVAFGMGLFSGKGSLGPGRHRAFAVTSESRASDLVLRFFDCCQTYKDFRK NHGPAVDNLKEPILTEITSALARRYEFNFTRQDISSLWFLCKQETSLLDITDQACSLF SPTEVALLEWTDDLEVFILKGYGKSLNYRMGVPLLKDVVQSMEEAIKAKEDNQAPGSY EKARLRFAHAETVVPFSCLLGLFLEGSDFQRIQKEEPLGLPPKPPQNRNWRGSTVAPF AGNNMLVLYSCPANSSSKYFVQVLHNEHPTRMPGCGGTDFCPFEVFHGHHYILAEFHS GLTPMLTQNKIFLQQEFLVR" CDS join(588979..589079,589229..589316,589816..590109, 590423..590581,590759..590899,591019..591075, 591629..591767,592301..592405,592534..592724, 592974..593015,593101..593188,593349..593371) /locus_tag="TCM_042449" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Histidine acid phosphatase family protein isoform 1" /protein_id="EOY17689.1" /db_xref="Phytozome:GSVIVT01032758001" /db_xref="TAIR:AT1G09870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC60" /translation="MAMAAILLLILALFSNSKADQDFDVRQHLSTVTRYSAVKDIVDD SFLPSDIPDGCTPIHLNLVARHGTRTPTKKRMRELEKLAAHVQELVKDAKEKNLSLQK VPAWLQKWESPWKGKLTGGELDIKGEEEMYQLGIRVRERFPDIFNEEYHPDVYPIKTT QVPRASASAVAFGMGLFSGKGSLGPGRHRAFAVTSESRASDLVLRFFDCCQTYKDFRK NHGPAVDNLKEPILTEITSALARRYEFNFTRQDISSLWFLCKQETSLLDITDQACSLF SPTEVALLEWTDDLEVFILKGYGKSLNYRMGVPLLKDVVQSMEEAIKAKEDNQAPGSY EKARLRFAHAETVVPFSCLLGLFLEGSDFQRIQKEEPLGLPPKPPQNRNWRGSTVAPF AGNNMLVLYSCPANSSSKYFVQVLHNEHPTRMPGCGGTDFCPFEVFEERIVRPHLKHD YNTLCNVNLDQPKQKPETTTGTTTF" mobile_element complement(589072..589114) /note="source:scaffold_8_CACTA_0850 10846 10888" /mobile_element_type="transposon:TIR/CACTA" gene complement(593766..596457) /locus_tag="TCM_042450" /note="dbxref CacaoGD:Thecc1EG042450" mRNA complement(join(593766..593856,594043..594136, 594213..594319,594387..594458,594556..594668, 594804..595156,595565..596457)) /locus_tag="TCM_042450" /product="PLAC8 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000158t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19210.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8040t3_C1" CDS complement(join(593804..593856,594043..594136, 594213..594319,594387..594458,594556..594668, 594804..595156,595565..595930)) /locus_tag="TCM_042450" /note="paralog of Thecc1EG000158t1" /codon_start=1 /product="PLAC8 family protein" /protein_id="EOY17693.1" /db_xref="Phytozome:POPTR_0010s19210.1" /db_xref="TAIR:AT4G35920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MXC9" /translation="MAPGLNSLGLTTLILSSARNASMHRNNCEQLAEHVKLIGNLLEK LKSTNLVTLPAVKEPLDGLDEALKKALDLVESCRDKSWLYMLALGWSIVYQFRRVQAE TDRYLHLVPLISLVHEFQMQNLEECLQAIEQDQREYSLDEEDVEAQRVILKPDRTKKD ANILEKSLSRRYPDLRFQEALQEEKEKMHVELQRSRTIDDSKQCRVIEHLIDVTENVV NVLPGKEVHKLLVNEPAYVLAGYMTNEKPRGRELGLKTEERCQSEWQVDLFDCCSEPC LSLKTCFYPCGVFSSITNVVSKGKTSREQAISDLMAYSLICGCRCYSCCIRKKLRELF NIKGGSGDDYLTHLICCCCAMVQEWRELEARGFEGCEGREMIPPPYQYMKP" gene 596714..601508 /locus_tag="TCM_042451" /note="dbxref CacaoGD:Thecc1EG042451" mRNA join(596714..597692,598302..598451,598612..598882, 599021..599131,599321..599492,599694..599948, 600158..600352,600537..601380) /locus_tag="TCM_042451" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032763001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035278t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg458t1" mRNA join(597085..597692,598302..598451,598612..598882, 599021..599131,599321..599492,599694..599948, 600158..600352,600537..600756,601030..601508) /locus_tag="TCM_042451" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032763001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035278t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19240.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7758t5; alternateUTRof:Thecc1EG042451t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg458t1" mRNA join(597085..597692,598302..598451,598612..598882, 599021..599131,599321..599492,599694..599948, 600158..600352,600537..600756,600899..601057) /locus_tag="TCM_042451" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032763001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035278t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7785t3; alternateUTRof:Thecc1EG042451t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg458t1" CDS join(597198..597692,598302..598451,598612..598882, 599021..599131,599321..599492,599694..599948, 600158..600352,600537..600729) /locus_tag="TCM_042451" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG035278t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY17694.1" /db_xref="Phytozome:POPTR_0010s19240.1" /db_xref="TAIR:AT3G56080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AEG0" /translation="MPISVPNLFKERKYPFLFALSILLISFAILFLTNSFSPFPSLPL SSELHVSQSQPPTPPPPPSSLRSRSPNDTVRFPPESRSRNDAASEVDLSVSLDVQWGN CKLGAAAVDYIPCLDNWKAIKELKSRKHMEHRERHCPSPSPRCLVPLPSGYKAPVQWP KSRDMIWYDNVPHPKLVEYKKEQNWVRKSGDYFVFPGGGTQFKNGVTSYIDFIKKTLP AIQWGKHIRVILDVGCGVASFGGFLLDKGVITMSFAPKDEHEAQIQFALERGIPAILS VIGTQKLTFPDNAYDLIHCARCRVHWDGDGGKPLLELNRILRPGGYFIWSATPVYRDD ERDRNVWKSMVALTTSMCWKVVAKTVDSTGIGLVIYQKPASYSCYEQRKEKSPPLCDQ KNNQNISWYEPLSYCLSRLPADNMGNLLSWPKPWPRRLSSKPPSLPSEPDAKDIFNED SKHWAALVSDVYLDGLAINWASIRNVMDMNAGYGGFAAALIEQSLWVMNVVPIDAQDT LPIIFDRGLIGVYHDWCESFNTYPRTYDILHSSFLFGNLKERCDIIDVAVEMDRILRP GGYLLVQDTMEMIKKLNPVLRSLHWSTSLYQGQFLVGKKGSWRPSDD" CDS join(597198..597692,598302..598451,598612..598882, 599021..599131,599321..599492,599694..599948, 600158..600352,600537..600729) /locus_tag="TCM_042451" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG035278t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY17695.1" /db_xref="Phytozome:POPTR_0010s19240.1" /db_xref="TAIR:AT3G56080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AEG0" /translation="MPISVPNLFKERKYPFLFALSILLISFAILFLTNSFSPFPSLPL SSELHVSQSQPPTPPPPPSSLRSRSPNDTVRFPPESRSRNDAASEVDLSVSLDVQWGN CKLGAAAVDYIPCLDNWKAIKELKSRKHMEHRERHCPSPSPRCLVPLPSGYKAPVQWP KSRDMIWYDNVPHPKLVEYKKEQNWVRKSGDYFVFPGGGTQFKNGVTSYIDFIKKTLP AIQWGKHIRVILDVGCGVASFGGFLLDKGVITMSFAPKDEHEAQIQFALERGIPAILS VIGTQKLTFPDNAYDLIHCARCRVHWDGDGGKPLLELNRILRPGGYFIWSATPVYRDD ERDRNVWKSMVALTTSMCWKVVAKTVDSTGIGLVIYQKPASYSCYEQRKEKSPPLCDQ KNNQNISWYEPLSYCLSRLPADNMGNLLSWPKPWPRRLSSKPPSLPSEPDAKDIFNED SKHWAALVSDVYLDGLAINWASIRNVMDMNAGYGGFAAALIEQSLWVMNVVPIDAQDT LPIIFDRGLIGVYHDWCESFNTYPRTYDILHSSFLFGNLKERCDIIDVAVEMDRILRP GGYLLVQDTMEMIKKLNPVLRSLHWSTSLYQGQFLVGKKGSWRPSDD" CDS join(597198..597692,598302..598451,598612..598882, 599021..599131,599321..599492,599694..599948, 600158..600352,600537..600729) /locus_tag="TCM_042451" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG035278t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY17696.1" /db_xref="Phytozome:POPTR_0010s19240.1" /db_xref="TAIR:AT3G56080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AEG0" /translation="MPISVPNLFKERKYPFLFALSILLISFAILFLTNSFSPFPSLPL SSELHVSQSQPPTPPPPPSSLRSRSPNDTVRFPPESRSRNDAASEVDLSVSLDVQWGN CKLGAAAVDYIPCLDNWKAIKELKSRKHMEHRERHCPSPSPRCLVPLPSGYKAPVQWP KSRDMIWYDNVPHPKLVEYKKEQNWVRKSGDYFVFPGGGTQFKNGVTSYIDFIKKTLP AIQWGKHIRVILDVGCGVASFGGFLLDKGVITMSFAPKDEHEAQIQFALERGIPAILS VIGTQKLTFPDNAYDLIHCARCRVHWDGDGGKPLLELNRILRPGGYFIWSATPVYRDD ERDRNVWKSMVALTTSMCWKVVAKTVDSTGIGLVIYQKPASYSCYEQRKEKSPPLCDQ KNNQNISWYEPLSYCLSRLPADNMGNLLSWPKPWPRRLSSKPPSLPSEPDAKDIFNED SKHWAALVSDVYLDGLAINWASIRNVMDMNAGYGGFAAALIEQSLWVMNVVPIDAQDT LPIIFDRGLIGVYHDWCESFNTYPRTYDILHSSFLFGNLKERCDIIDVAVEMDRILRP GGYLLVQDTMEMIKKLNPVLRSLHWSTSLYQGQFLVGKKGSWRPSDD" gene complement(601047..603871) /locus_tag="TCM_042452" /note="dbxref CacaoGD:Thecc1EG042452" mRNA complement(join(601047..602006,602099..603871)) /locus_tag="TCM_042452" /product="Peptide-N4-(N-acetyl-beta- glucosaminyl)asparagine amidase A protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G05480.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19250.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05814t00001; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9164t3" CDS complement(join(601976..602006,602099..603864)) /locus_tag="TCM_042452" /codon_start=1 /product="Peptide-N4-(N-acetyl-beta- glucosaminyl)asparagine amidase A protein, putative" /protein_id="EOY17697.1" /db_xref="Phytozome:POPTR_0010s19250.1" /db_xref="TAIR:AT5G05480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HSK3" /translation="MYYYYYYSAFILFFLFLTRTVPTFTAPDHFLKLLKPPKPEVQEF FELTNPLPSDHLTPSCSVTVIHHSYANTINSPPFSTRYSPPSDCPPPWPRVVLELHVA SSGEQYDRIAAIWLDGAEILRTSTAEPTETGIFWRVRKDITRYSSLLSKSQINATMML ENVVNDIYTGVYHVHVSFLFYKENVTPDEVGIPSIISPNKNNYNLGTADMGLFQTPSD LIIPICDDGQRGHWFRVKSESDVHMKKVRFPKNTLQVVLELYASFHGNDEFWYSNPPN SYIRLNNLTTERGNGAFREVFVTIDSKFVGSEVVFPVVFTGGINPLFWEPVVAIGDFK LPSYDLDLTPFLGWLLDGKSHEIRIGVDDAISFWLVNANLHIWLDHGTSRVKAKSIVY NSPALTIERQEAFRLLDGSFRIKAKRKSEFAGWVKSKAGNFTTIVSQEFRVTNLIRFD FNGTYKVVKQRVKAKRDSRIRADSGNLIGRAVTRRRYPLTVITSTVPLAHKADEYLLF TNVSHALSERRINGVYKRIVYNRQDSEGWMKVRDHSVLSGEATTWQRYNFRDEFGCYS RTVLAFNGKLIGDNTTFSCAASTFSFCASMLL" gene 604172..607343 /locus_tag="TCM_042453" /note="dbxref CacaoGD:Thecc1EG042453" mRNA join(604172..605626,606664..607254) /locus_tag="TCM_042453" /product="Ankyrin repeat family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19260.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19260.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg458t3" mRNA join(604417..605626,606612..607343) /locus_tag="TCM_042453" /product="Ankyrin repeat family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19260.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19260.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc563t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg458t3; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc70t1_C1" CDS join(604643..605626,606664..607116) /locus_tag="TCM_042453" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ankyrin repeat family protein, putative isoform 1" /protein_id="EOY17698.1" /db_xref="Phytozome:POPTR_0010s19260.1" /translation="MENLLEISEPEVRINFILNSKCRYNLMLRSLCPAFPVAFKVQTS SPHKFLVNPPSGLVPPLSQVALQIVLKPQDQIPPTFPRSHSDRFLIRTALFDLDSGGT AHSDSVDSCLSARPTHDIKLKVAFVGRFLLHHAVSCGNLEIVRKMIKRQKSVLYDLST REAESLLQVATQLANSEDMVNLLLEAGLRTASRGEEEDGHDAGFYQLDPRWESKGWTE LHVAVAFDRTEELVELLRKGRREPLDWRDKEGRTPLHLAASKGNIECAKILVESGVDK NAKSKDGRTALFRAAANGNRRMVEMLIELDADPTIPDDRGRSAFDIARDKGHEEMVEI MERGEEVLMAARRGDATRLQSLLQKGAATNFQDQYGLTALHAAAIKGHKDVVSLLIES GSDLERRDNEGHTALHLAVEGGHLETVEALIEKGANAKAKNKRGVSPLYMAKAMGYDV ISQVLVQRGNYSSLPSASSSSSSLPSML" CDS join(604643..605626,606612..606950) /locus_tag="TCM_042453" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ankyrin repeat family protein, putative isoform 2" /protein_id="EOY17699.1" /db_xref="Phytozome:POPTR_0010s19260.1" /translation="MENLLEISEPEVRINFILNSKCRYNLMLRSLCPAFPVAFKVQTS SPHKFLVNPPSGLVPPLSQVALQIVLKPQDQIPPTFPRSHSDRFLIRTALFDLDSGGT AHSDSVDSCLSARPTHDIKLKVAFVGRFLLHHAVSCGNLEIVRKMIKRQKSVLYDLST REAESLLQVATQLANSEDMVNLLLEAGLRTASRGEEEDGHDAGFYQLDPRWESKGWTE LHVAVAFDRTEELVELLRKGRREPLDWRDKEGRTPLHLAASKGNIECAKILVESGVDK NAKSKDGRTALFRAAANGNRRMVEMLIELDADPTIPDDRGRSAFDIARDKGHPKICSK NELTRTWHDHVGRNGGDHGTWRGSTDGSKTGRRDAATITLAKRSRHEFSGPIWTHRPA CSGNKRSQGRGFAAHRIGVGLGTSGQRRPHGVASGGGGWPLGNSGGVD" gene 607496..611090 /locus_tag="TCM_042454" /note="dbxref CacaoGD:Thecc1EG042454" mRNA join(607496..607622,607760..607804,608579..608647, 608746..608955,609048..609115,610528..610724, 610858..611090) /locus_tag="TCM_042454" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc381t1" CDS join(608943..608955,609048..609115,610528..610695) /locus_tag="TCM_042454" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17700.1" /translation="MLLHDDANRLLVPAWKALHNFLFVFLKLGKGVGDSRLTGAARRA PNQTINVASGATPEPGFFRVDLTATIALTTEDKSEPFT" gene 609180..610558 /locus_tag="TCM_042455" /note="dbxref CacaoGD:Thecc1EG042455" mRNA join(609180..609765,610532..610558) /locus_tag="TCM_042455" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc6953t4" CDS join(609581..609765,610532..610547) /locus_tag="TCM_042455" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17701.1" /translation="MLSTPYMATWKFIVLVLLDSINYLTFVQVRCYYTTKLVGKHIHW ALLSNLSPFVNRASKDFRERSR" gene complement(614617..615211) /locus_tag="TCM_042456" /note="dbxref CacaoGD:Thecc1EG042456" mRNA complement(join(614617..614719,614802..614914, 615010..615088,615179..615211)) /locus_tag="TCM_042456" /product="Rad21/Rec8-like family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07230.1" /inference="similar to AA sequence:ricco:29729.m002269" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg414t1" CDS complement(join(614637..614719,614802..614914, 615010..615062)) /locus_tag="TCM_042456" /note="dbxref ricco:29729.m002269" /codon_start=1 /product="Rad21/Rec8-like family protein, putative" /protein_id="EOY17702.1" /db_xref="TAIR:AT5G05490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHU4" /translation="MEAPVTDPPDIMTENIRKYMKAHFETPGAPQVESLNNLAARLNR KGAAQLFYQTCVLTSQGFLKVKQREPFGDILISKGPKM" gene complement(616897..617451) /locus_tag="TCM_042458" /note="dbxref CacaoGD:Thecc1EG042458" mRNA complement(join(616897..617132,617228..617451)) /locus_tag="TCM_042458" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07230.1" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(join(617000..617132,617228..617412)) /locus_tag="TCM_042458" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17703.1" /translation="MVISNMYIKLRIIFNVMLHVRPLSLSFLQLMITTSPYSIHFSLI HTFMINLKGNFKSLVPWGFEGGHGETQLNVNLEEYIEIPTTPIPSPAQQDGPQRGKST VMP" mobile_element 621187..621907 /note="source:CACAO_Mariner_E38_scaffold_2 1313 2086" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 627132..631942 /locus_tag="TCM_042459" /note="dbxref CacaoGD:Thecc1EG042459" mRNA join(627132..627630,627724..627862,628138..628209, 628357..628500,628601..628741,628981..629441, 629597..629787,629874..630006,630624..631191, 631352..631942) /locus_tag="TCM_042459" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042192t2" /inference="similar to AA sequence:Phytozome:POPTR_0010s19270.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg531t2" mRNA join(627321..627630,627724..627862,628138..628209, 628357..628500,628601..628741,628981..629441, 629597..629787,629874..630006,630624..>630649) /locus_tag="TCM_042459" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07210.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19270.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc20012t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg531t2" CDS join(627522..627630,627724..627862,628138..628209, 628357..628500,628601..628741,628981..629441, 629597..629787,629874..630006,630624..631191, 631352..631430) /locus_tag="TCM_042459" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042192t2" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY17704.1" /db_xref="Phytozome:POPTR_0010s19270.1" /db_xref="TAIR:AT4G18640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HSK6" /translation="MMNKNWKFVRLRQEFGVGVVLFLLCQSLVCRSLNEEGLALLRLK ERVVNDPFGAFSDWKEEDGLFDHCSWFGVECSDGKVVVLNLKDLCLEGTLAPELGTLI HIKSIILRNNLFTGIIPEEIGELKKLEVLDLGYNNFSGPVPPELGSNLSLMILLLDDN ELLISSFSPEIAELQKLSETQVDENQLSITAKSSCKKRFNTWNIGQYEDAVQRRLLLA AAAPSPEGPPSFSFSKIPPQPHAPQIGPHPASAETSPNSTYNRDDPHKRRSSAQAPAP SENNTGSPNASDPSSSGSKPTSSHSNSNQRPTIIAGAIGGAIFLLILIVGTYLFEASK VSTVKPWATGLSGQLQKAFVTGVPKLKRSELEGACEDFSNVIGSSTIGTVYKGTLSNG VEIAVASVPVKSAKDWSKPLETQFRKKIDTLSKVNHKNFVNLLGYCEEEEPFTRMMVF EYAPNGTLFEHLHIKESEHLDWPMRLRIIMGMAYCLEHMHQLNPPIPHNNLSSSAVNL TEDYAAKMSDPCFWNEITAAEREADRTNLADPSLSSLESNVYTFGVLLFEIVTGRMPY LVDNGSLEDWASDYLRRKQALIEMVDPTLNSFDRDQLEELGKVIKSCVHPEPRCRPDM KEVSARLREITAITPDSAIPKLSPLWWADLLYIFEIERKSRKFSLVFGFQCENT" CDS join(627522..627630,627724..627862,628138..628209, 628357..628500,628601..628741,628981..629441, 629597..629787,629874..630006,630624..>630649) /locus_tag="TCM_042459" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY17705.1" /db_xref="Phytozome:POPTR_0010s19270.1" /db_xref="TAIR:AT5G45840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC90" /translation="MMNKNWKFVRLRQEFGVGVVLFLLCQSLVCRSLNEEGLALLRLK ERVVNDPFGAFSDWKEEDGLFDHCSWFGVECSDGKVVVLNLKDLCLEGTLAPELGTLI HIKSIILRNNLFTGIIPEEIGELKKLEVLDLGYNNFSGPVPPELGSNLSLMILLLDDN ELLISSFSPEIAELQKLSETQVDENQLSITAKSSCKKRFNTWNIGQYEDAVQRRLLLA AAAPSPEGPPSFSFSKIPPQPHAPQIGPHPASAETSPNSTYNRDDPHKRRSSAQAPAP SENNTGSPNASDPSSSGSKPTSSHSNSNQRPTIIAGAIGGAIFLLILIVGTYLFEASK VSTVKPWATGLSGQLQKAFVTGVPKLKRSELEGACEDFSNVIGSSTIGTVYKGTLSNG VEIAVASVPVKSAKDWSKPLETQFRKKIDTLSKVNHKNFVNLLGYCEEEEPFTRMMVF EYAPNGTLFEHLHIKESEHLDW" gene 632005..632759 /locus_tag="TCM_042460" /note="dbxref CacaoGD:Thecc1EG042460" mRNA 632005..632759 /locus_tag="TCM_042460" /product="Pollen Ole e 1 allergen and extensin family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032773001" /inference="similar to AA sequence:Phytozome:GSVIVT01032773001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc1064t1" CDS 632076..632606 /locus_tag="TCM_042460" /codon_start=1 /product="Pollen Ole e 1 allergen and extensin family protein" /protein_id="EOY17706.1" /db_xref="Phytozome:GSVIVT01032773001" /db_xref="TAIR:AT5G05500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFG5" /translation="MASSHLAVFISSLLLLPLAFPSIAAAYGDTLQGKKTEVVVEGVV YCQSCDNYGSWSLSKAEPIASAKVSVICRNDMDQVSFYKAFETDGNGYFFAELEGFQM SHSLLDHPLQSCRVKLVSSPLENCNLLSNVNYGLNGSPLRYENKRLHRKDYEVVVYAA GPLAFRPANCPAPTNY" gene complement(632765..635291) /locus_tag="TCM_042461" /note="dbxref CacaoGD:Thecc1EG042461" mRNA complement(join(632765..634080,634159..634235, 634617..634647)) /locus_tag="TCM_042461" /product="Mad3/BUB1 region 1, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29814.m000749" /inference="similar to AA sequence:ricco:29814.m000749" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc178t1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9451t3" mRNA complement(join(632765..634086,634159..634235, 634617..634647)) /locus_tag="TCM_042461" /product="Mad3/BUB1 region 1, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29814.m000749" /inference="similar to AA sequence:ricco:29814.m000749" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc178t3; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9451t3" mRNA complement(join(632767..634080,634159..634243, 634617..634774,634869..635013,635096..635291)) /locus_tag="TCM_042461" /product="Mad3/BUB1 region 1, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29814.m000749" /inference="similar to AA sequence:ricco:29814.m000749" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b040985t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9451t3" mRNA complement(join(632767..634086,634159..634243, 634617..634774,634869..635013,635096..635291)) /locus_tag="TCM_042461" /product="Mad3/BUB1 region 1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29814.m000749" /inference="similar to AA sequence:ricco:29814.m000749" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9451t3" CDS complement(join(632995..634080,634159..634243, 634617..634774,634869..635013,635096..635196)) /locus_tag="TCM_042461" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29814.m000749" /codon_start=1 /product="Mad3/BUB1 region 1, putative isoform 2" /protein_id="EOY17708.1" /db_xref="TAIR:AT5G05510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SQQ9" /translation="MAEKNETMYRNLFSSVISEIKSYSGKDPLLPWLRGIKKMKESLP PEILNEKLPRFLQKCTQTFESDRRYRNDLRYLRVWLQLMDFVDEPRLLLRRMEMNHIG TKRSLYYQAYALYYEKIKKFDEAETMYHLGVQNLAEPVDELQKSYEQFLNRMERHKKK KIQEGRTARRPLQCSQSKENSEGICIVEDKHKRSSALHDGISKKRALTERELDEPRRI RNDDTVGVKFVDTAIVGKSEAEDACHHGLVDPTINMKEAMNAINSMFREPLETAPIGR RSHRRQQKEDCSLNSGFRVFDANLDSGINSSIQPEEKGQKGKARTCQAQEDSFKIYVD DEEDSEAGEGNDEKDNLEQIEVQNLKGDSMSSASHLNMFVFPCPNDSPESSDDVDAQS SRQPKLREDTVVHRFVGSTISDEPVVENVCHHGLVDPTINLKEAMQDINSMFGKPIDF VRAKRKKQEKAPVNKNQDVGGFSILPDDELENQERLPPSKSSAKLSDCDLFEPTVFTK EAMDDINKMFGMPLDF" CDS complement(join(632995..634086,634159..634243, 634617..634774,634869..635013,635096..635196)) /locus_tag="TCM_042461" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29814.m000749" /codon_start=1 /product="Mad3/BUB1 region 1, putative isoform 1" /protein_id="EOY17707.1" /db_xref="TAIR:AT5G05510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SQQ9" /translation="MAEKNETMYRNLFSSVISEIKSYSGKDPLLPWLRGIKKMKESLP PEILNEKLPRFLQKCTQTFESDRRYRNDLRYLRVWLQLMDFVDEPRLLLRRMEMNHIG TKRSLYYQAYALYYEKIKKFDEAETMYHLGVQNLAEPVDELQKSYEQFLNRMERHKKK KIQRQEGRTARRPLQCSQSKENSEGICIVEDKHKRSSALHDGISKKRALTERELDEPR RIRNDDTVGVKFVDTAIVGKSEAEDACHHGLVDPTINMKEAMNAINSMFREPLETAPI GRRSHRRQQKEDCSLNSGFRVFDANLDSGINSSIQPEEKGQKGKARTCQAQEDSFKIY VDDEEDSEAGEGNDEKDNLEQIEVQNLKGDSMSSASHLNMFVFPCPNDSPESSDDVDA QSSRQPKLREDTVVHRFVGSTISDEPVVENVCHHGLVDPTINLKEAMQDINSMFGKPI DFVRAKRKKQEKAPVNKNQDVGGFSILPDDELENQERLPPSKSSAKLSDCDLFEPTVF TKEAMDDINKMFGMPLDF" CDS complement(join(632995..634080,634159..634188)) /locus_tag="TCM_042461" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29814.m000749" /codon_start=1 /product="Mad3/BUB1 region 1, putative isoform 4" /protein_id="EOY17710.1" /db_xref="TAIR:AT5G05510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SQQ9" /translation="MERHKKKKIQEGRTARRPLQCSQSKENSEGICIVEDKHKRSSAL HDGISKKRALTERELDEPRRIRNDDTVGVKFVDTAIVGKSEAEDACHHGLVDPTINMK EAMNAINSMFREPLETAPIGRRSHRRQQKEDCSLNSGFRVFDANLDSGINSSIQPEEK GQKGKARTCQAQEDSFKIYVDDEEDSEAGEGNDEKDNLEQIEVQNLKGDSMSSASHLN MFVFPCPNDSPESSDDVDAQSSRQPKLREDTVVHRFVGSTISDEPVVENVCHHGLVDP TINLKEAMQDINSMFGKPIDFVRAKRKKQEKAPVNKNQDVGGFSILPDDELENQERLP PSKSSAKLSDCDLFEPTVFTKEAMDDINKMFGMPLDF" CDS complement(join(632995..634086,634159..634188)) /locus_tag="TCM_042461" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29814.m000749" /codon_start=1 /product="Mad3/BUB1 region 1, putative isoform 3" /protein_id="EOY17709.1" /db_xref="TAIR:AT5G05510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SQQ9" /translation="MERHKKKKIQRQEGRTARRPLQCSQSKENSEGICIVEDKHKRSS ALHDGISKKRALTERELDEPRRIRNDDTVGVKFVDTAIVGKSEAEDACHHGLVDPTIN MKEAMNAINSMFREPLETAPIGRRSHRRQQKEDCSLNSGFRVFDANLDSGINSSIQPE EKGQKGKARTCQAQEDSFKIYVDDEEDSEAGEGNDEKDNLEQIEVQNLKGDSMSSASH LNMFVFPCPNDSPESSDDVDAQSSRQPKLREDTVVHRFVGSTISDEPVVENVCHHGLV DPTINLKEAMQDINSMFGKPIDFVRAKRKKQEKAPVNKNQDVGGFSILPDDELENQER LPPSKSSAKLSDCDLFEPTVFTKEAMDDINKMFGMPLDF" gene 636542..640148 /locus_tag="TCM_042462" /note="dbxref CacaoGD:Thecc1EG042462" mRNA join(636542..637153,637827..638312,638509..639009, 639493..640148) /locus_tag="TCM_042462" /product="Outer membrane OMP85 family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29814.m000748" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031379t2" /inference="similar to AA sequence:TAIR:AT5G05520.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05171t00001" mRNA join(636556..637153,638509..639009,639493..640008) /locus_tag="TCM_042462" /product="Outer membrane OMP85 family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29814.m000748" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031379t2" /inference="similar to AA sequence:Phytozome:GSVIVT01032775001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc533t1; inference alignment:Newbler:10:TSA:cgbaB_g05171t00001" CDS join(636608..637153,637827..638312,638509..639009, 639493..639576) /locus_tag="TCM_042462" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG031379t2" /codon_start=1 /product="Outer membrane OMP85 family protein isoform 1" /protein_id="EOY17711.1" /db_xref="TAIR:AT5G05520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFG3" /translation="MSNREPKPDSTPPNSKPDPERPKPFKTNDIEEEEDEDDENDLED DENQNDDVFGEPNSPKPQAREARYRAEKLKMDSLLQRMQSGPVSLRVHDVIIKGNTKT KDHIIEAETEELKSVSSMQELLKASQLVNLRLQALEVFDSVKITLDSGPPELPGTANV IIEVVETANPLSGQIGAYTKAEARSSTVEGSLKYKNPFGYGDLWDGSLAYGCDHSAEV SAGVYLPRFKGLASPVTARAYLLSQDWLKFSSYKERSLGLSLGLFSTTHHDVAYNLAW RMVTDPSQMSSRSIRRQLGHNLLSSLKYTFKFDRRNSTLRPTRGYAFVSTTQIGGLAP DSRSLRFLRQEFDLRYAVPLGFYRAALNFGISGGVVFPLGNGFLSRPSSLPERFFLGG NMSPVCTVGGPTALWGFKTRGLGPTEPRRKVNDENTDPSGVDFLGGDLAVTALADLSF DLPFRWFREKGIHAHVFACTGNVAKLTENEYRNFSVQKFVDSLRSSVGVGLVVPTSLF RMELNYCYILRKFDHDRAKTGFWLTFSGAS" CDS join(636608..637153,638509..639009,639493..639576) /locus_tag="TCM_042462" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG031379t2" /codon_start=1 /product="Outer membrane OMP85 family protein isoform 2" /protein_id="EOY17712.1" /db_xref="Phytozome:GSVIVT01032775001" /db_xref="TAIR:AT5G05520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B4FIX9" /translation="MSNREPKPDSTPPNSKPDPERPKPFKTNDIEEEEDEDDENDLED DENQNDDVFGEPNSPKPQAREARYRAEKLKMDSLLQRMQSGPVSLRVHDVIIKGNTKT KDHIIEAETEELKSVSSMQELLKASQLVNLRLQALEVFDSVKITLDSGPPELPGTANV IIEVVETANPLSGQIGAYTKAEEFDLRYAVPLGFYRAALNFGISGGVVFPLGNGFLSR PSSLPERFFLGGNMSPVCTVGGPTALWGFKTRGLGPTEPRRKVNDENTDPSGVDFLGG DLAVTALADLSFDLPFRWFREKGIHAHVFACTGNVAKLTENEYRNFSVQKFVDSLRSS VGVGLVVPTSLFRMELNYCYILRKFDHDRAKTGFWLTFSGAS" gene 643075..645310 /locus_tag="TCM_042463" /note="dbxref CacaoGD:Thecc1EG042463" mRNA join(643075..643602,643773..643849,643963..643999, 644123..644234,644380..645310) /locus_tag="TCM_042463" /product="Myb-like HTH transcriptional regulator family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19310.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19310.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06963t00001" CDS join(643326..643602,643773..643849,643963..643999, 644123..644234,644380..645025) /locus_tag="TCM_042463" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein, putative" /protein_id="EOY17713.1" /db_xref="Phytozome:POPTR_0010s19310.1" /db_xref="TAIR:AT2G40260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCA9" /translation="MMASDSIEDSETSQDNNNKEGCSEDEEEEVNKSNSKAANGESSS NSSIEENGKKHASGSVRQYNRSKTPRLRWTPDLHLCFVHAVERLGGQDRATPKLVLQL MNIKGLSIAHVKSHLQMYRSKKIDDPNQAMTEQGLLFEGGDHPTYKLSHLPMLHSFDN QRPSSSFRYGDVSWRGNDQKVYGSHRGGSALALDIATKGLYTSVTERLFGSYHNNSLG ISSPMADSCVRGKAASGRRTHQTLEEVQSLPGSWQTQTRPSRLGPITFTAQFQERGTD QTRCLSSINNSKQNSWRMTQEAQDRLKRKTSASNHDLDLKLSLKMTPPNINDDDESER DSLERFAGSLSLSLSSPSSSSKLSSLKEGNTDGRKHSRTMASTLDLTL" gene 646385..654625 /locus_tag="TCM_042464" /note="dbxref CacaoGD:Thecc1EG042464" mRNA join(646385..647687,648575..648755,648840..648989, 649137..649298,649397..649569,649661..649727, 650004..650170,650361..650519,650735..650826, 650914..651008,651280..651357,651596..651691, 651915..651989,652065..652156,652241..652403, 652539..653549) /locus_tag="TCM_042464" /product="UDP-glucose pyrophosphorylase 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19320.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19320.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03320t00002" CDS join(646975..647687,648575..648755,648840..648989, 649137..649298,649397..649569,649661..649727, 650004..650170,650361..650519,650735..650826, 650914..651008,651280..651357,651596..651691, 651915..651989,652065..652156,652241..652403, 652539..652568) /locus_tag="TCM_042464" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="UDP-glucose pyrophosphorylase 3 isoform 1" /protein_id="EOY17714.1" /db_xref="Phytozome:POPTR_0010s19320.1" /db_xref="TAIR:AT3G56040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IY62" /translation="MASSTRASSLLLLNHKNNHFTLSLNSKRPSLFHSFPSVSSQNPL FSVSFSLSLSSSPSPSTSSSITRVSTAALEYAPPAPDSNNFQQEISRLKTLRLKLSAS KTLKQKLKVLNSDSKVKHFLNTRGFEKVLGSLGLGLDESFLVKCLVAAGQEHVLEMGF GFGEKGGDGVRSSVKTALYALVEMIEKWDVNNGGLREGFVKSQNGSVLEDEDSEDLRK LLKILGEIEEFYGCIGGIIGYQIMVLELLSRSSHEMQTTNHSQHVHESMEYQFLEIHV PTGCDLSQNTEYASQAALWGIEGLPDLGEIYPLGGSADRLGLVDPDTGECLPAAMLRY CGWTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHEHITSLCERLGWFGR GRSSFQLFEQPLVPTVSAEDGQWLVRKPFVPVCKPGGHGVIWKLAYDKGIFQWFYDHG RKGATVRQVSNVVAATDVTLLALAGIGLHHGKKLGFASCKRNSGATEGVNVLIEKKNL DGKWAYGLSCIEYTEFDKFGITSGPPSPNSLQAEFPANTNILYVDLPSAELVGSTRSE RSLPGLVLNTKKSIVYTDYFGSWHSVHGGRLECTMQNIADNFLNTYSSRCYKGVEDKL DTFIVYNERRRVTSSAKKKRKHADMSLHQTPDGSLLDIMRNAYDLLSHCDIDLPEVEG NDKYVDSGPPFLIFLHPALGPLWEVTRQKFSGGSISKGSELQIEVAEFLWRNVQLEGS MIIAADNIMGSTRVDENGEPTLRYGHRYGRCKLHNVKVLNDGIDWSSGDNVYWKHDVR RFEALKVILHGNAEFEASNVTIQAAAILGSMQ" mRNA join(<646983..647687,648575..648755,648840..648989, 649137..649298,649397..649569,649661..649727, 650004..650170,650361..650519,650735..650826, 650914..651008,651277..651357,651596..651691, 651915..651989,652065..652156,652241..652403, 652590..652650,652999..654625) /locus_tag="TCM_042464" /product="UDP-glucose pyrophosphorylase 3 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19320.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19320.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg439t4; inference alignment:Newbler:10:TSA:cgbaL_g03320t00002" mRNA join(<646983..647687,648575..648755,648840..648989, 649137..649298,649397..649569,649661..649727, 650004..650170,650361..650519,650735..650826, 650914..651008,651280..651357,651596..651691, 651915..651989,652065..652156,652238..652403, 652585..652650,652999..654625) /locus_tag="TCM_042464" /product="UDP-glucose pyrophosphorylase 3 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19320.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19320.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg439t5; inference alignment:Newbler:10:TSA:cgbaL_g03320t00002" mRNA join(<646983..647687,648575..648755,648840..648989, 649137..649298,649397..649569,649661..649727, 650004..650170,650361..650519,650735..650826, 650914..651008,651280..651357,651596..651691, 651915..651989,652065..652156,652241..652403, 652590..652652,652999..654625) /locus_tag="TCM_042464" /product="UDP-glucose pyrophosphorylase 3 isoform 2" /inference="similar to AA sequence:Phytozome:POPTR_0010s19320.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg439t3" mRNA join(<646983..647687,648575..648755,648840..648989, 649137..649298,649397..649569,649661..649727, 650004..650170,650368..650519,650735..650826, 650914..651008,651280..651357,651594..651691, 651915..651989,652065..652156,652238..652403, 652590..652705) /locus_tag="TCM_042464" /product="UDP-glucose pyrophosphorylase 3 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19320.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19320.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg439t1; inference alignment:Newbler:10:TSA:cgbaL_g03320t00002" CDS join(<646984..647687,648575..648755,648840..648989, 649137..649298,649397..649569,649661..649727, 650004..650170,650361..650519,650735..650826, 650914..651008,651277..651357,651596..651691, 651915..651989,652065..652156,652241..652403, 652590..652650,652999..653111) /locus_tag="TCM_042464" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="UDP-glucose pyrophosphorylase 3 isoform 3" /protein_id="EOY17716.1" /db_xref="Phytozome:POPTR_0010s19320.1" /db_xref="TAIR:AT3G56040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IY62" /translation="STRASSLLLLNHKNNHFTLSLNSKRPSLFHSFPSVSSQNPLFSV SFSLSLSSSPSPSTSSSITRVSTAALEYAPPAPDSNNFQQEISRLKTLRLKLSASKTL KQKLKVLNSDSKVKHFLNTRGFEKVLGSLGLGLDESFLVKCLVAAGQEHVLEMGFGFG EKGGDGVRSSVKTALYALVEMIEKWDVNNGGLREGFVKSQNGSVLEDEDSEDLRKLLK ILGEIEEFYGCIGGIIGYQIMVLELLSRSSHEMQTTNHSQHVHESMEYQFLEIHVPTG CDLSQNTEYASQAALWGIEGLPDLGEIYPLGGSADRLGLVDPDTGECLPAAMLRYCGW TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHEHITSLCERLGWFGRGRS SFQLFEQPLVPTVSAEDGQWLVRKPFVPVCKPGGHGVIWKLAYDKGIFQWFYDHGRKG ATVRQVSNVVAATDVTLLALAGIGLHHGKKLGFASCKRNSGATEGVNVLIEKKNLDGK WAYGLSCIEYTEFDKFGITSGPPSPNSLQAEFPANTNILYVDLPSAELVGSTRSERSL PGLVLNTKKSIVYTDYFGSWHSVHGGRLECTMQNIADNFLNTYSSRCYKGVEDKLDTF IVYNERRRVTSSAKKKRKHADMSLHQQTPDGSLLDIMRNAYDLLSHCDIDLPEVEGND KYVDSGPPFLIFLHPALGPLWEVTRQKFSGGSISKGSELQIEVAEFLWRNVQLEGSMI IAADNIMGSTRVDENGEPTLRYGHRYGRCKLHNVKVLNDGIDWSSGDNVYWKHDVRRF EALKVILHGNAEFEASNVTIQGNHLFEVPDGYRMKITSGDPGLALQLDPLPQSLMDRG SWFWKYNINGCHILLELIEL" CDS join(<646984..647687,648575..648755,648840..648989, 649137..649298,649397..649569,649661..649727, 650004..650170,650361..650519,650735..650826, 650914..651008,651280..651357,651596..651691, 651915..651989,652065..652156,652241..652403, 652590..652652,652999..653004) /locus_tag="TCM_042464" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="UDP-glucose pyrophosphorylase 3 isoform 2" /protein_id="EOY17715.1" /db_xref="Phytozome:POPTR_0010s19320.1" /db_xref="TAIR:AT3G56040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IY62" /translation="STRASSLLLLNHKNNHFTLSLNSKRPSLFHSFPSVSSQNPLFSV SFSLSLSSSPSPSTSSSITRVSTAALEYAPPAPDSNNFQQEISRLKTLRLKLSASKTL KQKLKVLNSDSKVKHFLNTRGFEKVLGSLGLGLDESFLVKCLVAAGQEHVLEMGFGFG EKGGDGVRSSVKTALYALVEMIEKWDVNNGGLREGFVKSQNGSVLEDEDSEDLRKLLK ILGEIEEFYGCIGGIIGYQIMVLELLSRSSHEMQTTNHSQHVHESMEYQFLEIHVPTG CDLSQNTEYASQAALWGIEGLPDLGEIYPLGGSADRLGLVDPDTGECLPAAMLRYCGW TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHEHITSLCERLGWFGRGRS SFQLFEQPLVPTVSAEDGQWLVRKPFVPVCKPGGHGVIWKLAYDKGIFQWFYDHGRKG ATVRQVSNVVAATDVTLLALAGIGLHHGKKLGFASCKRNSGATEGVNVLIEKKNLDGK WAYGLSCIEYTEFDKFGITSGPPSPNSLQAEFPANTNILYVDLPSAELVGSTRSERSL PGLVLNTKKSIVYTDYFGSWHSVHGGRLECTMQNIADNFLNTYSSRCYKGVEDKLDTF IVYNERRRVTSSAKKKRKHADMSLHQTPDGSLLDIMRNAYDLLSHCDIDLPEVEGNDK YVDSGPPFLIFLHPALGPLWEVTRQKFSGGSISKGSELQIEVAEFLWRNVQLEGSMII AADNIMGSTRVDENGEPTLRYGHRYGRCKLHNVKVLNDGIDWSSGDNVYWKHDVRRFE ALKVILHGNAEFEASNVTIQGNHLFEVPDGYRMKITSGDPGV" CDS join(<646984..647687,648575..648755,648840..648989, 649137..649298,649397..649569,649661..649727, 650004..650170,650361..650519,650735..650826, 650914..651008,651280..651357,651596..651691, 651915..651989,652065..652156,652238..652403, 652585..652629) /locus_tag="TCM_042464" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="UDP-glucose pyrophosphorylase 3 isoform 4" /protein_id="EOY17717.1" /db_xref="Phytozome:POPTR_0010s19320.1" /db_xref="TAIR:AT3G56040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IY62" /translation="STRASSLLLLNHKNNHFTLSLNSKRPSLFHSFPSVSSQNPLFSV SFSLSLSSSPSPSTSSSITRVSTAALEYAPPAPDSNNFQQEISRLKTLRLKLSASKTL KQKLKVLNSDSKVKHFLNTRGFEKVLGSLGLGLDESFLVKCLVAAGQEHVLEMGFGFG EKGGDGVRSSVKTALYALVEMIEKWDVNNGGLREGFVKSQNGSVLEDEDSEDLRKLLK ILGEIEEFYGCIGGIIGYQIMVLELLSRSSHEMQTTNHSQHVHESMEYQFLEIHVPTG CDLSQNTEYASQAALWGIEGLPDLGEIYPLGGSADRLGLVDPDTGECLPAAMLRYCGW TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHEHITSLCERLGWFGRGRS SFQLFEQPLVPTVSAEDGQWLVRKPFVPVCKPGGHGVIWKLAYDKGIFQWFYDHGRKG ATVRQVSNVVAATDVTLLALAGIGLHHGKKLGFASCKRNSGATEGVNVLIEKKNLDGK WAYGLSCIEYTEFDKFGITSGPPSPNSLQAEFPANTNILYVDLPSAELVGSTRSERSL PGLVLNTKKSIVYTDYFGSWHSVHGGRLECTMQNIADNFLNTYSSRCYKGVEDKLDTF IVYNERRRVTSSAKKKRKHADMSLHQTPDGSLLDIMRNAYDLLSHCDIDLPEVEGNDK YVDSGPPFLIFLHPALGPLWEVTRQKFSGGSISKGSELQIEVAEFLWRNVQLEGSMII AADNIMGSTRVDENGEPTLRYGHSRYGRCKLHNVKVLNDGIDWSSGDNVYWKHDVRRF EALKVILHGNAEFEASNVTIQYREIIYLKSQMATE" CDS join(<646984..647687,648575..648755,648840..648989, 649137..649298,649397..649569,649661..649727, 650004..650170,650368..650425) /locus_tag="TCM_042464" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="UDP-glucose pyrophosphorylase 3 isoform 5" /protein_id="EOY17718.1" /db_xref="Phytozome:POPTR_0010s19320.1" /db_xref="TAIR:AT3G56040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IY62" /translation="STRASSLLLLNHKNNHFTLSLNSKRPSLFHSFPSVSSQNPLFSV SFSLSLSSSPSPSTSSSITRVSTAALEYAPPAPDSNNFQQEISRLKTLRLKLSASKTL KQKLKVLNSDSKVKHFLNTRGFEKVLGSLGLGLDESFLVKCLVAAGQEHVLEMGFGFG EKGGDGVRSSVKTALYALVEMIEKWDVNNGGLREGFVKSQNGSVLEDEDSEDLRKLLK ILGEIEEFYGCIGGIIGYQIMVLELLSRSSHEMQTTNHSQHVHESMEYQFLEIHVPTG CDLSQNTEYASQAALWGIEGLPDLGEIYPLGGSADRLGLVDPDTGECLPAAMLRYCGW TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHEHITSLCERLGWFGRGRS SFQLFEQPLVPTVSAEDGQWLVRKPFVPVCKPGGHGVIWKLAYDKGIFQWFYDHGRKG ATVRQVSNVVAATDVTLLALAGIGLHHGKKLGFASCKRNSGATEGVNVLIEKKNLDGK WAYGLSCIEYTEFDKFGITSGPPSPNRQSSLPIPTFFMWIYLPLN" gene complement(653465..657172) /locus_tag="TCM_042465" /note="dbxref CacaoGD:Thecc1EG042465" mRNA complement(join(653465..656338,656680..657172)) /locus_tag="TCM_042465" /product="Plant U-box 13" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19330.1" /inference="similar to AA sequence:ricco:29814.m000743" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage" CDS complement(653614..655881) /locus_tag="TCM_042465" /note="dbxref ricco:29814.m000743" /codon_start=1 /product="Plant U-box 13" /protein_id="EOY17719.1" /db_xref="TAIR:AT3G46510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHT7" /translation="MVHLLASTLLSFSVKCTKRSSQDFHAKNDNKEVCSKLPNFVIKP LAWKKWWQTASGTDSLLERNSVMELALPPVMASSGFLPSGSLLQSLIHVSNEVASMEK LPFVQVRNISTMMRRIKLLSSLFEEIQEINSPLPPSSVLCLTELFSVIRRVKVLTEGC RDGSSIWGLIQTELISNQFYAIVKEMGRALDILPLSLLDVTVDIREQVELLHKQAKRA ELFVDPREVQRREELLQVMASNNGKNRKNQRFVDIETVKEVLSSIGLRSPLDYEEEIS KLEAEALKQAGTGGLFVVSNINNLVSFVSYSKSMIFSSSEECEKNKEDIKQSCGSINR NLDQSSTSQSMSLNIPDEFRCPISLDLMKDPVIVASGHTYERNSIAQWINTGRHTCPK SGQRLIHMALIPNYALKSLVHQWCQENNIPLTECSSSNTSELERSNSKQKACEKAIDH ISATKVAIDAVKMTAEFLVGKLAMGSPDIQRQAAYELRLLAKTGMDNRRLIAEAGAIP FLVTLLSSNDPRIQENAVTALLNLSIFDNNKVLIMAAGGIDNIVEVLESGKTMEARGN AAAAIFSLSMIDDFKMAIGARPTTILALVGLLREGTTVAKRDAATAIFNLALYNANKA SIIAAGTVPLLIELLMDDKAGVTDDALGVLALLLSCPQGLEAIKKSRVLVPLLIDLLR FGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLAADGSSKARRKADALL RLLNRCCSQSHNPVG" mobile_element complement(657180..657224) /note="source:CACAO_M_E57660_F369_scaffold_9 1385 1429" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 660080..660883 /locus_tag="TCM_042466" /note="dbxref CacaoGD:Thecc1EG042466" mRNA 660080..660883 /locus_tag="TCM_042466" /product="LOB domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032779001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016952t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032779001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8340t1" CDS 660248..660766 /locus_tag="TCM_042466" /note="paralog of Thecc1EG016952t1" /codon_start=1 /product="LOB domain-containing protein, putative" /protein_id="EOY17720.1" /db_xref="Phytozome:GSVIVT01032779001" /db_xref="TAIR:AT3G11090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SQQ2" /translation="MRSQEPRSRASCAACKLLKRRCTPNCIFAPYFRSDEPKKFAKVH KVFGASNVSKILIEVPEEQREETVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQH DLALARERLARYAATTSSAIISSDRVSMGPFGEFQVPAASCGGFIDSFSLNSFEVNQD AHMYDFSQIPYV" gene complement(661737..664091) /locus_tag="TCM_042467" /note="dbxref CacaoGD:Thecc1EG042467" mRNA complement(join(661737..662157,663234..664091)) /locus_tag="TCM_042467" /product="Sequence-specific DNA binding transcription factors" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400052301" /inference="similar to AA sequence:ricco:29814.m000741" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc656t1" CDS complement(join(662144..662157,663234..663945)) /locus_tag="TCM_042467" /note="dbxref ricco:29814.m000741" /codon_start=1 /product="Sequence-specific DNA binding transcription factors" /protein_id="EOY17721.1" /db_xref="TAIR:AT5G05550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T4L8" /translation="MNLRGLPHITHSSGGSGGGREDCWSEGATGTLIEAWGDRYLRLN RGNLRQKDWQEVADAVNSRQNGAKPRKTDVQCKNRIDTLKKKYKLERAKPPPSKWPFF KRIDSLIGANASVNKKHSAVTFTIKPKATSFLKGPRSTESSFGDEDGDEDEVRKEHRV EDVGLSDGAACRELARAILKFGEIYERIESSKQQQMMELEKQRMEFTKDLEFQRMNML VDAQLEMEKSKRQKHLTRSGKKH" gene complement(664399..667372) /locus_tag="TCM_042468" /note="dbxref CacaoGD:Thecc1EG042468" mRNA complement(join(664399..666178,666801..667372)) /locus_tag="TCM_042468" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008727" /inference="similar to AA sequence:ricco:30128.m008727" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10192t00001; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9256t3" CDS complement(664554..665639) /locus_tag="TCM_042468" /note="dbxref ricco:30128.m008727" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY17722.1" /db_xref="TAIR:AT3G56030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AEK6" /translation="MPLFLQLSYQLSVTVTMSILRKLHNKSPYSQSILKILPASFFFT GQIPDPGPVPDEPFPDEPTSAYYDEQVYKAGRSGDLVTVGHLLNKRVRDGCFNTTKTF KFLTATESSFSILDDLVRTVSRLDKGVPRKNAFDSLISRLCKLGKTDESLRVIDTMAK EGYGLNAVSFYPILCVLTKKKKMEEAWRVVDLMRDAGLLPDVTTYNYLLTAYCFEGKL AEATAVVKKMEEEGLGADGRTFDALIMGACKAGKVEGALLLLRSMVGDGFHVMHSTHT HVINGMLRLGYWDPAVRFVMACRGRDEKLDQESFGVLANKLIGLRRRDEAMLVLSEMR KMGLTMGRKLTDFYEMNVNKNQGTEGN" gene 666186..667339 /locus_tag="TCM_042469" /note="dbxref CacaoGD:Thecc1EG042469" mRNA 666186..667339 /locus_tag="TCM_042469" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 666403..666621 /locus_tag="TCM_042469" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17723.1" /translation="MTIPQKKKTIKKRKGKMMSSHEMFCLSQRRTVPCHACCLYTIPI ADDHPVCLSKEKKTGGGIIMRYGLISPF" gene 672775..674548 /locus_tag="TCM_042470" /note="dbxref CacaoGD:Thecc1EG042470" mRNA 672775..674548 /locus_tag="TCM_042470" /product="HXXXD-type acyl-transferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19360.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s07130.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc629t1" CDS 672997..674337 /locus_tag="TCM_042470" /codon_start=1 /product="HXXXD-type acyl-transferase family protein" /protein_id="EOY17724.1" /db_xref="Phytozome:POPTR_0008s07130.1" /db_xref="TAIR:AT2G40230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XEF2" /translation="MGSLVHVKEATIVTPCEPTPSRVLSLSALDSQLFLRFTIEYLLV YEGHPGLDQRATVARVKAALGKALVPYYPFAGRVRAKPDGSGLEVVCRAQGVWFVEAS SDHSVNEFGRAPRFVTQWRKFLSFQVADVLKGAPPLVVQLTWLKDGNAALGVGITHCL CDGIGSAEFLNSFAELASTSQTKFSEFKFKPKPVWDRHLLNPAPCKPSRNNNNNNNHS LSHPEFNRVPDLCGFQARFSNERLVPTSFIFNKTSLNELKKVAFSTSRLSEANYTSFE VLSAHIWRSWGRALNLPSNQILKLLFSINVRERVKPSLPSGYYGNAFVLGCAQTSVKD LTEKGLGYATMLVKRAKERVDGEFVKSVVESVSQGRASPDSVGVLILSQWSRLGLEKV DFGMGRPVQVGPVCCDRYCLLLPVFNQTDAVKATVAVPTSAYPRYEHLVRSFCS" mobile_element complement(678236..678291) /note="source:INTACT255_F60_scaffold_8-int 6273 6327" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 678330..679883 /locus_tag="TCM_042471" /note="dbxref CacaoGD:Thecc1EG042471" mRNA 678330..679883 /locus_tag="TCM_042471" /product="Integrase-type DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29814.m000739" /inference="similar to AA sequence:Phytozome:POPTR_0010s19370.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc5174t2" CDS 678451..679437 /locus_tag="TCM_042471" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein, putative" /protein_id="EOY17725.1" /db_xref="Phytozome:POPTR_0010s19370.1" /db_xref="TAIR:AT2G40220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HSL6" /translation="MDQDQDQSPLSHPPQETTAKTTTTTTTSPDQDTKSSESESVIIS PNTNPPGSSCTTTTSRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLG TFATAEDAARAYDRAAIILYGSKAQLNLQPSVSSSSSSSASSSRGGSSSSSSTQTLRP LLPRPSGFAFSFASSSNPVTHPASLIAGGSSSKFMPYGVYPNLLGPAALYPNIVQNPQ QALQIVQQTEPSLVVNPGDPTGTLTSYTNPNPQQTQQHHQGSLYEDINSLVGSVGSSL SLSAQTSVAPAVPDPGLTVGPGSPSVWPLTNDDDYPPACIWDYGDPNFFFDF" gene 682788..684803 /locus_tag="TCM_042472" /note="dbxref CacaoGD:Thecc1EG042472" mRNA join(682788..683376,683623..683702,684478..684803) /locus_tag="TCM_042472" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400027443" /inference="similar to AA sequence:Phytozome:POPTR_0008s07110.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15216t00001" CDS join(682873..683376,683623..683702,684478..684598) /locus_tag="TCM_042472" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY17726.1" /db_xref="Phytozome:POPTR_0008s07110.1" /db_xref="TAIR:AT3G11110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHT1" /translation="MASSQDSQPFHWHYAELEDRDFQIRGRTLFFIIVLFSFVLVFTL IFVYSRWICSFHRDNSSTRSPTSHAPPQPRPEPRGLDPVTINALPITMVTRGRKSAAA AAVALESECCICLGVFEDGEKVKVLPACQHSYHSECVDRWLSAESSCPLCRASLRAES ELHQIPVIVVVVVSGEIKVMLFPSLTFNTIIKQFRIASLDGLGVNETGCGLLAAGCWL LAAVCTLTSPESDGCF" gene 685619..686573 /locus_tag="TCM_042473" /note="dbxref CacaoGD:Thecc1EG042473" mRNA join(685619..685668,685768..686053,686170..686573) /locus_tag="TCM_042473" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc227t5_C2" CDS join(685984..686053,686170..686321) /locus_tag="TCM_042473" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17727.1" /translation="MLLSFCLKVYAFGFQLLDGCYAKGKILGAVKWVIDDYVCHEYRG QFVLKLEPIHCFVACTFHGENHCLGPSRT" gene complement(686893..688070) /locus_tag="TCM_042474" /note="dbxref CacaoGD:Thecc1EG042474" mRNA complement(join(686893..687249,687370..688070)) /locus_tag="TCM_042474" /product="Myb domain protein 73" /inference="alignment:exonerate- protein:2:ricco:29814.m000736" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007138t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s07100.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc2629t1_C1" CDS complement(join(687229..687249,687370..688059)) /locus_tag="TCM_042474" /note="paralog of Thecc1EG007138t1" /codon_start=1 /product="Myb domain protein 73" /protein_id="EOY17728.1" /db_xref="Phytozome:POPTR_0008s07100.1" /db_xref="TAIR:AT4G37260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCB3" /translation="MIKGGDRVKGSWSPQEDANLIRLVEQHGPRNWSMISSGIPGRSG KSCRLRWCNQLSPDVQHRPFTPAEDAVIIRAHAAHGNKWATIARQLPGRTDNAVKNHW NSTLRRKRAAELSSGSSESNNSAVKRWSSQDASESDSGNKRQCLRVEVHENVEFVGPK TLLTLSPPGESVVSGHMEEKVEDEEEEEVVKRDEEGGGRGGGGGGEEEKRRVEMKETC LLTIMQRMIKEEFVAFNG" gene complement(689417..690997) /locus_tag="TCM_042475" /note="dbxref CacaoGD:Thecc1EG042475" mRNA complement(join(689417..690092,690275..690997)) /locus_tag="TCM_042475" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07090.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s07090.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg515t2" CDS complement(join(689610..690092,690275..690568)) /locus_tag="TCM_042475" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY17729.1" /db_xref="Phytozome:POPTR_0008s07090.1" /db_xref="TAIR:AT2G40200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HSL8" /translation="MENCYLSSWPEGENWAEFNATPSNESSFTVPLPIEPRFSASSSV QCQGFPSWVVPIEGVAEDRATVVSKSHSQAEKRRRDRINAQLAALRKLIPKSDKMDKA ALLGSAIEHVKDLKRKATEVSKAFTIPTEVDEVTVDCDLPENISPPTNPRQTKDNKIF IRASVCCDDRPEVFAELIRVLKGLRLSTVKADISSVGGRMRSNLILCNDDSEDQGVSP STLKQSLNVVLSRIASSSAGSNCRIRSKRQRLFLPSQFTQ" gene complement(693034..695230) /locus_tag="TCM_042476" /note="dbxref CacaoGD:Thecc1EG042476" mRNA complement(join(693034..694089,694860..695022)) /locus_tag="TCM_042476" /product="Differentiation-associated protein 1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032790001" /inference="similar to AA sequence:Phytozome:GSVIVT01032790001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3844t1" mRNA complement(join(693220..694083,694860..695230)) /locus_tag="TCM_042476" /product="Differentiation-associated protein 1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032790001" /inference="similar to AA sequence:Phytozome:GSVIVT01032790001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9694t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3844t1" CDS complement(join(693361..694083,694860..694901)) /locus_tag="TCM_042476" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Differentiation-associated protein 1, putative isoform 2" /protein_id="EOY17731.1" /db_xref="Phytozome:GSVIVT01032790001" /db_xref="TAIR:AT3G56010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LY44" /translation="MAISLNSVLGFNLKAKYQHASRSSAGASALKANPITFPLQIYGS RGHIQQKRWGLCLSVADSDRLAANSSVKGSGDAERPVSDNQVAALKPTLLDSPRGNGL LETNADNESPSETSETSNGSMVSSNLKQEAPLSPGLQSTTKKAPLTAKERLRAARVLS RYAESKPSKSEMGSKVLDALRESDKGKKRSRLPEAPTNLFDDSKRGLPKQGLTFQFPG GSDLFLIIFSFVFISTVMFTTTYIVWKVGAIHFNEY" CDS complement(join(693361..694089,694860..694901)) /locus_tag="TCM_042476" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Differentiation-associated protein 1, putative isoform 1" /protein_id="EOY17730.1" /db_xref="Phytozome:GSVIVT01032790001" /db_xref="TAIR:AT3G56010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LY44" /translation="MAISLNSVLGFNLKLQAKYQHASRSSAGASALKANPITFPLQIY GSRGHIQQKRWGLCLSVADSDRLAANSSVKGSGDAERPVSDNQVAALKPTLLDSPRGN GLLETNADNESPSETSETSNGSMVSSNLKQEAPLSPGLQSTTKKAPLTAKERLRAARV LSRYAESKPSKSEMGSKVLDALRESDKGKKRSRLPEAPTNLFDDSKRGLPKQGLTFQF PGGSDLFLIIFSFVFISTVMFTTTYIVWKVGAIHFNEY" gene complement(695164..698677) /locus_tag="TCM_042477" /note="dbxref CacaoGD:Thecc1EG042477" mRNA complement(join(695164..695780,695876..695985, 696249..696442,696554..696622,696723..696909, 697564..697850,697925..698677)) /locus_tag="TCM_042477" /product="UDP-Glycosyltransferase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032791001" /inference="similar to AA sequence:Phytozome:POPTR_0012s09750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06315t00001" mRNA complement(join(695222..695780,695876..695985, 696249..696442,696554..696622,696723..696861, 697564..697850,697925..698327)) /locus_tag="TCM_042477" /product="UDP-Glycosyltransferase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032791001" /inference="similar to AA sequence:Phytozome:GSVIVT01032791001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc514t6; inference alignment:Newbler:10:TSA:cgbaB_g06315t00001" CDS complement(join(695539..695780,695876..695985, 696249..696442,696554..696622,696723..696861, 697564..697850,697925..698224)) /locus_tag="TCM_042477" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 2" /protein_id="EOY17733.1" /db_xref="Phytozome:GSVIVT01032791001" /db_xref="TAIR:AT2G40190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IH01" /translation="MITWILSWSLISLPLATILLFASKILNRRRNKKRAVGYFHPYTN DGGGGERVLWCAVKAIQEQNPDLDSVIFTGDHDASSQSLMSRATDRFGVHLLYPPKVV HLNKRKWIEETTYPHFTMIGQSLGSVYLSWEALSKFTPLYYFDTSGYAFTYPIARLFG CKVICYTHYPTISLDMVSRVRQRSSMYNNDALIAGRIYGMVGSCAHLVMVNSSWTQSH IEKLWRTPERTKRVYPPCDTSGLQALPLERAMETPKIISVSQFRPEKAHGLQLEAFSV AIRKLDKDLPRPTLQFVGSCRNKSDEERLQNLKDKAVQLNITEDVEFHKNLMYRDLVR LLGGAVAGIHSMIDEHFGICVVEYMAAGAIPIAHNSAGPKMDIVLDEDGQETGFLALS VEEYADAILKIIRMPESERLKIAAAARRRANRFSEQRFYDDFKAAIRPILCHSS" CDS complement(join(695539..695780,695876..695985, 696249..696442,696554..696622,696723..696909, 697564..697850,697925..698224)) /locus_tag="TCM_042477" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 1" /protein_id="EOY17732.1" /db_xref="Phytozome:POPTR_0012s09750.1" /db_xref="TAIR:AT2G40190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IH01" /translation="MITWILSWSLISLPLATILLFASKILNRRRNKKRAVGYFHPYTN DGGGGERVLWCAVKAIQEQNPDLDSVIFTGDHDASSQSLMSRATDRFGVHLLYPPKVV HLNKRKWIEETTYPHFTMIGQSLGSVYLSWEALSKFTPLYYFDTSGYAFTYPIARLFG CKVICYTHYPTISLDMVSRVRQRSSMYNNDALIAGSTWLSQCKIIYYTVFSRIYGMVG SCAHLVMVNSSWTQSHIEKLWRTPERTKRVYPPCDTSGLQALPLERAMETPKIISVSQ FRPEKAHGLQLEAFSVAIRKLDKDLPRPTLQFVGSCRNKSDEERLQNLKDKAVQLNIT EDVEFHKNLMYRDLVRLLGGAVAGIHSMIDEHFGICVVEYMAAGAIPIAHNSAGPKMD IVLDEDGQETGFLALSVEEYADAILKIIRMPESERLKIAAAARRRANRFSEQRFYDDF KAAIRPILCHSS" gene complement(698726..711881) /locus_tag="TCM_042478" /note="dbxref CacaoGD:Thecc1EG042478" mRNA complement(join(698726..699632,699737..699847, 700027..700149,700485..700670,700746..700916, 701025..701510,701672..702674,702758..703036, 703118..703254,703350..703602,703706..703818, 703891..703995,704084..704146,704246..704380, 704476..704559,704659..704745,705037..705096, 705255..705371,705479..705676,705766..705882, 706351..706416,706508..706735,706817..706896, 707522..707630,707726..707824,708321..708448, 708592..708670,708764..708852,709609..709813, 710048..710514,711717..711881)) /locus_tag="TCM_042478" /product="Clathrin, heavy chain isoform 1" /inference="alignment:exonerate-protein:2:frave:gene20994" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042168t3" /inference="similar to AA sequence:Phytozome:Glyma18g02960.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc9t19" mRNA complement(join(698990..699632,699737..699850, 700027..700149,700485..700670,700746..700918, 701025..701510,701672..702674,702758..703036, 703118..703254,703350..703602,703706..703818, 703891..703995,704084..704146,704246..704380, 704476..704559,704659..704745,705037..705096, 705255..705371,705479..705676,705766..705882, 706351..706416,706508..706735,706817..706896, 707522..707630,707726..707824,708321..708448, 708592..708673)) /locus_tag="TCM_042478" /product="Clathrin, heavy chain isoform 5" /inference="alignment:exonerate-protein:2:frave:gene20994" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g000445.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042168t5" /inference="similar to AA sequence:ricco:29814.m000732" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg799t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg799t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc9t19" mRNA complement(join(699246..699632,699737..699810, 700746..700916,701025..701510,701672..702674, 702758..703036,703118..703254,703350..703602, 703706..703818,703891..703995,704084..704146, 704246..704380,704476..704559,704659..704745, 705037..705096,705255..705371,705479..705676, 705766..705882,706351..706416,706508..706735, 706817..706896,707522..707630,707726..707824, 708321..708448,708592..708670,708764..708852, 709609..709813,710048..710335)) /locus_tag="TCM_042478" /product="Clathrin, heavy chain isoform 3" /inference="alignment:exonerate-protein:2:frave:gene20994" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g000445.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042168t3" /inference="similar to AA sequence:ricco:29814.m000732" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc16881t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc9t19; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg799t2" mRNA complement(join(699247..699632,699737..699847, 700027..700104,701063..701510,701672..702674, 702758..703036,703118..703254,703350..703602, 703706..703818,703891..703995,704084..704146, 704246..704380,704476..704559,704659..704745, 705037..705096,705255..705371,705479..705676, 705766..705882,706351..706416,706508..706735, 706817..706896,707522..707630,707726..707824, 708321..708448,708592..708670,708764..708852, 709609..709813,710048..710394)) /locus_tag="TCM_042478" /product="Clathrin, heavy chain isoform 4" /inference="alignment:exonerate-protein:2:frave:gene20994" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g000445.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042168t5" /inference="similar to AA sequence:ricco:29814.m000732" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc9t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc9t19; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg799t2" CDS complement(join(699471..699632,699737..699847, 700027..700149,700485..700670,700746..700916, 701025..701510,701672..702674,702758..703036, 703118..703254,703350..703602,703706..703818, 703891..703995,704084..704146,704246..704380, 704476..704559,704659..704745,705037..705096, 705255..705371,705479..705676,705766..705882, 706351..706416,706508..706735,706817..706896, 707522..707630,707726..707824,708321..708448, 708592..708670,708764..708852,709609..709813, 710048..710092)) /locus_tag="TCM_042478" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042168t3" /codon_start=1 /product="Clathrin, heavy chain isoform 1" /protein_id="EOY17734.1" /db_xref="Phytozome:Glyma18g02960.1" /db_xref="TAIR:AT3G11130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRM1" /translation="MAAANAPIAMKEVLTLPSIGINPQFITFTNVTMESDKYICVRET APQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIEMK AKMKSHQMPEQVVFWKWISPKMLGLVTQTTVYHWSIEGDSEPTKMFERTANLVNNQII NYKCDPSEKWLVLIGIAPGAPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPG NENPSTLISFATKTFNAGQITSKLHVIELGAQPGKPSFSKKQADLFFPPDFQDDFPVA MQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEASSVGGFYSINRR GQVLLATVNDATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKE AAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSR LVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAER REFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPVDYNTITDL FLQRNLIREATAFLLDVLKPNLPEHAFLQTKVLEINLVTFPNVADAILANGMFSHYDR PRIAQLCEKAGLYVRALQHYTELPDVKRVIVNTHAIEPQALVEFFGTLSREWALECMK DLLLVNLRANLQIIVQVAKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPD IHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFV PDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPV EPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYY DSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEK VLNPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNS AFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKK FNLNVQAVNVLLDNIRSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRAD DATQFLDVIQAAEDGDVYPDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGEIEEFI LMPNVANLQNVGDRLFDEDLYEAAKIIFAFISNWAKLAVTLVRLKQFQGAVDAARKAN SAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESG LGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYL YIQYDEFDNAATTVMNHSPEAWDHMQFKDIAVKVANVELYYKAVHFYLQEHPDLINDM LNVLALRVDHTRVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRL RESIDFHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAM ETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVTLELAWMNNMIDFAF PYLLQFIREYTGKVDELIKYKIEAQIEEKAKEQEEKEVIAQQNMYAQLLPLALPAPPM PGMGGSTMGGVGMPPPPMGGMGMPPMPPFGMPPMGSY" mRNA complement(join(<699582..699632,699737..699847, 700027..700143,700485..700670,700746..700916, 701025..701510,701672..702674,702758..703036, 703118..703254,703350..703602,703706..703818, 703891..703995,704084..704146,704246..704380, 704476..704559,704659..704745,705037..705096, 705255..705371,705479..705676,705766..705882, 706351..706416,706508..706735,706817..706896, 707522..707630,707726..707824,708321..708448, 708592..708670,708764..708852,709609..709813, 710048..710415)) /locus_tag="TCM_042478" /product="Clathrin, heavy chain isoform 2" /inference="alignment:exonerate-protein:2:frave:gene20994" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g000445.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042168t3" /inference="similar to AA sequence:ricco:29814.m000732" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc9t19; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc9t19; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg799t2" CDS complement(join(<699582..699632,699737..699847, 700027..700143,700485..700670,700746..700916, 701025..701510,701672..702674,702758..703036, 703118..703254,703350..703602,703706..703818, 703891..703995,704084..704146,704246..704380, 704476..704559,704659..704745,705037..705096, 705255..705371,705479..705676,705766..705882, 706351..706416,706508..706735,706817..706896, 707522..707630,707726..707824,708321..708448, 708592..708670,708764..708852,709609..709813, 710048..710092)) /locus_tag="TCM_042478" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29814.m000732; paralog of Thecc1EG042168t3" /codon_start=1 /product="Clathrin, heavy chain isoform 2" /protein_id="EOY17735.1" /db_xref="TAIR:AT3G11130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRM1" /translation="MAAANAPIAMKEVLTLPSIGINPQFITFTNVTMESDKYICVRET APQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIEMK AKMKSHQMPEQVVFWKWISPKMLGLVTQTTVYHWSIEGDSEPTKMFERTANLVNNQII NYKCDPSEKWLVLIGIAPGAPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPG NENPSTLISFATKTFNAGQITSKLHVIELGAQPGKPSFSKKQADLFFPPDFQDDFPVA MQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEASSVGGFYSINRR GQVLLATVNDATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKE AAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSR LVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAER REFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPVDYNTITDL FLQRNLIREATAFLLDVLKPNLPEHAFLQTKVLEINLVTFPNVADAILANGMFSHYDR PRIAQLCEKAGLYVRALQHYTELPDVKRVIVNTHAIEPQALVEFFGTLSREWALECMK DLLLVNLRANLQIIVQVAKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPD IHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFV PDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPV EPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYY DSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEK VLNPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNS AFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKK FNLNVQAVNVLLDNIRSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRAD DATQFLDVIQAAEDGDVYPDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGEIEEFI LMPNVANLQNVGDRLFDEDLYEAAKIIFAFISNWAKLAVTLVRLKQFQGAVDAARKAN SAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESG LGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYL YIQYDEFDNAATTVMNHSPEAWDHMQFKDIAVKVANVELYYKAVHFYLQEHPDLINDM LNVLALRVDHTRVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRL RESIDFHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAM ETASQSGDRELAEELLVYFIEQKECFASCLFVCYDLIRPDVTLELAWMNNMIDFAFPY LLQFIREYTGKVDELIKYKIEAQIEEKAKEQEEKEVIAQQNMYAQLLPLALPAPPMP" mRNA complement(join(699597..699632,699737..699847, 700027..700149,700485..700670,700746..700915, 701217..701510,701672..702674,702758..703036, 703118..703254,703350..703602,703706..703818, 703891..703995,704084..704146,704246..704380, 704476..704559,704659..704745,705037..705096, 705255..705371,705479..705676,705766..705882, 706351..706416,706508..706735,706817..706896, 707522..707630,707726..707824,708321..708345)) /locus_tag="TCM_042478" /product="Clathrin, heavy chain isoform 6" /inference="alignment:exonerate-protein:2:frave:gene20994" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g000445.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042168t6" /inference="similar to AA sequence:Phytozome:Glyma18g02960.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc7t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg799t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc9t19" CDS complement(join(699748..699810,700746..700916, 701025..701510,701672..702674,702758..703036, 703118..703254,703350..703602,703706..703818, 703891..703995,704084..704146,704246..704380, 704476..704559,704659..704745,705037..705096, 705255..705371,705479..705676,705766..705882, 706351..706416,706508..706735,706817..706896, 707522..707630,707726..707824,708321..708448, 708592..708670,708764..708852,709609..709813, 710048..710092)) /locus_tag="TCM_042478" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29814.m000732; paralog of Thecc1EG042168t3" /codon_start=1 /product="Clathrin, heavy chain isoform 3" /protein_id="EOY17736.1" /db_xref="TAIR:AT3G11130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRM1" /translation="MAAANAPIAMKEVLTLPSIGINPQFITFTNVTMESDKYICVRET APQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIEMK AKMKSHQMPEQVVFWKWISPKMLGLVTQTTVYHWSIEGDSEPTKMFERTANLVNNQII NYKCDPSEKWLVLIGIAPGAPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPG NENPSTLISFATKTFNAGQITSKLHVIELGAQPGKPSFSKKQADLFFPPDFQDDFPVA MQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEASSVGGFYSINRR GQVLLATVNDATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKE AAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSR LVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAER REFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPVDYNTITDL FLQRNLIREATAFLLDVLKPNLPEHAFLQTKVLEINLVTFPNVADAILANGMFSHYDR PRIAQLCEKAGLYVRALQHYTELPDVKRVIVNTHAIEPQALVEFFGTLSREWALECMK DLLLVNLRANLQIIVQVAKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPD IHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFV PDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPV EPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYY DSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEK VLNPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNS AFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKK FNLNVQAVNVLLDNIRSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRAD DATQFLDVIQAAEDGDVYPDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGEIEEFI LMPNVANLQNVGDRLFDEDLYEAAKIIFAFISNWAKLAVTLVRLKQFQGAVDAARKAN SAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESG LGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYL YIQYDEFDNAATTVMNHSPEAWDHMQFKDIAVKVANVELYYKAVHFYLQEHPDLINDM LNVLALRVDHTRVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRL RESIDFHDNFDQIGLAQKSSTRLRLKLKKRLKSRKRRR" CDS complement(join(700079..700104,701063..701510, 701672..702674,702758..703036,703118..703254, 703350..703602,703706..703818,703891..703995, 704084..704146,704246..704380,704476..704559, 704659..704745,705037..705096,705255..705371, 705479..705676,705766..705882,706351..706416, 706508..706735,706817..706896,707522..707630, 707726..707824,708321..708448,708592..708670, 708764..708852,709609..709813,710048..710092)) /locus_tag="TCM_042478" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29814.m000732; paralog of Thecc1EG042168t5" /codon_start=1 /product="Clathrin, heavy chain isoform 4" /protein_id="EOY17737.1" /db_xref="TAIR:AT3G11130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRM1" /translation="MAAANAPIAMKEVLTLPSIGINPQFITFTNVTMESDKYICVRET APQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIEMK AKMKSHQMPEQVVFWKWISPKMLGLVTQTTVYHWSIEGDSEPTKMFERTANLVNNQII NYKCDPSEKWLVLIGIAPGAPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPG NENPSTLISFATKTFNAGQITSKLHVIELGAQPGKPSFSKKQADLFFPPDFQDDFPVA MQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEASSVGGFYSINRR GQVLLATVNDATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKE AAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSR LVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAER REFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPVDYNTITDL FLQRNLIREATAFLLDVLKPNLPEHAFLQTKVLEINLVTFPNVADAILANGMFSHYDR PRIAQLCEKAGLYVRALQHYTELPDVKRVIVNTHAIEPQALVEFFGTLSREWALECMK DLLLVNLRANLQIIVQVAKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPD IHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFV PDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPV EPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYY DSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEK VLNPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNS AFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKK FNLNVQAVNVLLDNIRSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRAD DATQFLDVIQAAEDGDVYPDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGEIEEFI LMPNVANLQNVGDRLFDEDLYEAAKIIFAFISNWAKLAVTLVRLKQFQGAVDAARKAN SAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESG LGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYL YIQYDEFDNAATTVMNHSPEAWDHMQFKDIAVKVANVELYYKAVHFYLQEHPDLINDM LNVLALLNPTRCYP" CDS complement(join(700895..700918,701025..701510, 701672..702674,702758..703036,703118..703254, 703350..703602,703706..703818,703891..703995, 704084..704146,704246..704380,704476..704559, 704659..704745,705037..705096,705255..705371, 705479..705676,705766..705882,706351..706416, 706508..706735,706817..706896,707522..707630, 707726..707824,708321..708448,708592..708640)) /locus_tag="TCM_042478" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29814.m000732; paralog of Thecc1EG042168t5" /codon_start=1 /product="Clathrin, heavy chain isoform 5" /protein_id="EOY17738.1" /db_xref="TAIR:AT3G11130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRM1" /translation="MLGLVTQTTVYHWSIEGDSEPTKMFERTANLVNNQIINYKCDPS EKWLVLIGIAPGAPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSTL ISFATKTFNAGQITSKLHVIELGAQPGKPSFSKKQADLFFPPDFQDDFPVAMQISHKY SLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEASSVGGFYSINRRGQVLLAT VNDATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAE SPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNK KNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKIL IYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPVDYNTITDLFLQRNLI REATAFLLDVLKPNLPEHAFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLC EKAGLYVRALQHYTELPDVKRVIVNTHAIEPQALVEFFGTLSREWALECMKDLLLVNL RANLQIIVQVAKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIE AAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYL YTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEEC EKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGK YCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLNPENE YRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFN LQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQA VNVLLDNIRSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLD VIQAAEDGDVYPDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGEIEEFILMPNVAN LQNVGDRLFDEDLYEAAKIIFAFISNWAKLAVTLVRLKQFQGAVDAARKANSAKTWKE VCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAH MGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEF DNAATTVMNHSPEAWDHMQFKDIAVKVANVELYYKAVHFYLQEHPDLINDMLNVLALR VDHTRVVDIMRKRLVICVL" CDS complement(join(700895..700915,701217..701510, 701672..702674,702758..703036,703118..703254, 703350..703602,703706..703818,703891..703995, 704084..704146,704246..704380,704476..704559, 704659..704745,705037..705096,705255..705371, 705479..705676,705766..705882,706351..706416, 706508..706735,706817..706896,707522..707630, 707726..707800)) /locus_tag="TCM_042478" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG042168t6" /codon_start=1 /product="Clathrin, heavy chain isoform 6" /protein_id="EOY17739.1" /db_xref="Phytozome:Glyma18g02960.1" /db_xref="TAIR:AT3G11130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRM1" /translation="MQLFSVDQQRSQALEAHAASFAQFKVPGNENPSTLISFATKTFN AGQITSKLHVIELGAQPGKPSFSKKQADLFFPPDFQDDFPVAMQISHKYSLIYVITKL GLLFVYDLETATAVYRNRISPDPIFLTSEASSVGGFYSINRRGQVLLATVNDATIVPF VSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTP DTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLA EDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYT PDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPVDYNTITDLFLQRNLIREATAFLLD VLKPNLPEHAFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRA LQHYTELPDVKRVIVNTHAIEPQALVEFFGTLSREWALECMKDLLLVNLRANLQIIVQ VAKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIK EVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYI EGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLL TQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTL AVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLNPENEYRRQLIDQV VSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTA IKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIR SIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIQAAEDGD VYPDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGEIEEFILMPNVANLQNVGDRLF DEDLYEAAKIIFAFISNWAKLAVTLVRLKQFQGAVDAARKANSAKTWKEVCFACVDAE EFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGV LYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTLVI CVL" gene complement(711929..714461) /locus_tag="TCM_042479" /note="dbxref CacaoGD:Thecc1EG042479" mRNA complement(join(711929..712713,712821..713000, 713123..713464,713676..714461)) /locus_tag="TCM_042479" /product="Phosphatase 2C5" /inference="alignment:exonerate- protein:2:ricco:29814.m000731" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042165t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19430.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc775t1" CDS complement(join(712540..712713,712821..713000, 713123..713464,713676..714440)) /locus_tag="TCM_042479" /note="paralog of Thecc1EG042165t1" /codon_start=1 /product="Phosphatase 2C5" /protein_id="EOY17740.1" /db_xref="Phytozome:POPTR_0010s19430.1" /db_xref="TAIR:AT2G40180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XEE8" /translation="MQNESTRRFLTKRKLNITRPSEKGASIASLKSRNSNRVKLGTQN PESKQENATSCTVFFTYINRRGNQLPLSMFTSRSWAFVSTFSPFFRYRRIMPWALVVP TSPMFSPKKLPSIFCKSDGSAFPLSPRVNASQAPQSPSSLPLSSPKSPRPFSSASVAA PQSPSVSSSSSSLKSSLSLGADTASPSVVKRKRPAMIEIPTPMAVKLGFAAETPRGEE EVQVEREGYSVYCKRGRRGKMEDRYSAVVNLTGDSKQAFFGVFDGHGGSKAAEFAAKN LDKKVMEAVSNRSCGEGIEDAIREAYLTTDIDFLKEDVVGGTCCVTAMVHEGDIVVSN AGDCRAVMSRSGVAEALTSDHKPSRQDERDRVEALAGYVDCCHGAWRIQGSLAVSRAI GDKHLKQWVIAEPETKLLKIQPECEFLILASDGLWDKVTNQEAVDLVRPFCVGVDKPE PFSACKKLAELSSWRGSFDDISVMIVQLQHFVSGLV" mobile_element 715487..715547 /note="source:scaffold_5_CACTA_0596 7006 7066" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(716540..716623) /note="source:CACAO_PIF_E119_scaffold_3 2417 2506" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 716979..717992 /locus_tag="TCM_042480" /note="dbxref CacaoGD:Thecc1EG042480" mRNA join(716979..717172,717278..717416,717514..717992) /locus_tag="TCM_042480" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400011756" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage" CDS join(717011..717172,717278..717416,717514..717572) /locus_tag="TCM_042480" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17741.1" /translation="MLEKKKVLASSYFPTLTYVYHNQTPPPNPLRGNGIGKHNPATAY SPALYISPSVVSNTLEEVISSQQQREELYRRAREGETVVPGGTGCKSLEAQEHLAEGS SREGQTRNEQIGTEGYQ" gene 719198..719949 /locus_tag="TCM_042481" /note="dbxref CacaoGD:Thecc1EG042481" mRNA join(719198..719412,719502..719949) /locus_tag="TCM_042481" /product="Late embryogenesis abundant protein B19.1A" /inference="alignment:exonerate- protein:2:frave:gene20993.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021659t1" /inference="similar to AA sequence:frave:gene13469" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03994t00002" CDS join(719277..719412,719502..719665) /locus_tag="TCM_042481" /note="dbxref frave:gene13469; paralog of Thecc1EG021659t1" /codon_start=1 /product="Late embryogenesis abundant protein B19.1A" /protein_id="EOY17742.1" /db_xref="TAIR:AT2G40170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8QXL3" /translation="MASEQVKNASDEERAELDARARLGEVVVPGGTRGKSLEAQERLA EGRHRGGETRKQQIGREGYQEMGRKGGRSTTDKPGGERAAEEGMPIDESKYRNNS" gene 721103..739003 /locus_tag="TCM_042482" /note="dbxref CacaoGD:Thecc1EG042482" mRNA join(721103..721402,721525..721588,721720..721804, 722445..722731,722857..722962,723094..723254, 723503..723690,723775..723844,724068..724241, 724556..725034,725543..726002,726597..726935, 727225..727308,727734..727826,727931..727990, 728368..728466,728779..728919,729301..729381, 729555..729626,729871..729942,730559..730652, 730730..730812,731280..731336,731457..731534, 731665..731786,731888..732048,732190..732266, 732345..732458,732551..732652,733222..733362, 733584..733757,734069..734132,734218..734357, 734445..734602,735027..735105,736122..736622, 736746..739003) /locus_tag="TCM_042482" /product="E3 ubiquitin ligase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032797001" /inference="similar to AA sequence:frave:gene20992" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:PASA:2:TSA:puevd3b041006t1a3; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc130t9" mRNA join(721103..721402,721525..721588,721720..721804, 722445..722731,722857..722962,723094..723254, 723503..723690,723775..723844,724068..724241, 724556..725034,725543..726002,726597..726935, 727225..727308,727734..727826,727931..727990, 728368..728466,728779..728919,729301..729381, 729555..729626,729871..729942,730559..730652, 730730..730812,731280..731336,731457..731534, 731665..731786,731888..732048,732190..732266, 732345..732458,732551..732652,733222..733362, 733584..733757,734069..734132,734218..734357, 734445..734602,735027..735105,735384..735482, 736122..736622,736746..737329) /locus_tag="TCM_042482" /product="E3 ubiquitin ligase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032797001" /inference="similar to AA sequence:frave:gene20992" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc130t9; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc130t9" mRNA join(721103..721402,721525..721588,721720..721804, 722445..722731,722857..722962,723094..723254, 723503..723690,723775..723844,724068..724241, 724556..725034,725543..726002,726597..726935, 727225..727308,727734..727826,727931..727990, 728368..728466,728779..728919,729301..729381, 729555..729626,729871..729942,730559..730652, 730730..730812,731280..731336,731457..731534, 731665..731786,731888..732048,732190..732266, 732345..732458,732551..732652,733222..733362, 733584..733757,734069..734132,734218..734357, 734445..734600,736251..737329) /locus_tag="TCM_042482" /product="E3 ubiquitin ligase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032797001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc166t3; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc130t9" CDS join(721176..721402,721525..721588,721720..721804, 722445..722731,722857..722962,723094..723254, 723503..723690,723775..723844,724068..724241, 724556..725034,725543..726002,726597..726935, 727225..727308,727734..727826,727931..727990, 728368..728466,728779..728919,729301..729381, 729555..729626,729871..729942,730559..730652, 730730..730812,731280..731336,731457..731534, 731665..731786,731888..732048,732190..732266, 732345..732458,732551..732652,733222..733362, 733584..733757,734069..734132,734218..734357, 734445..734602,735027..735105,735384..735482, 736122..736508) /locus_tag="TCM_042482" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene20992" /codon_start=1 /product="E3 ubiquitin ligase isoform 1" /protein_id="EOY17743.1" /db_xref="TAIR:AT5G05560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHR5" /translation="MPVGVRQLTVLGEFKPFGLIAEALDGKPPDNSADNYDYLLFDPE IARQRDENLDNDASASALSDRRDHELFIRGNRIIWSVGSRVFKRFTLPSPVIKACWCR MGDMSEALLCVLQIDSLTIYNISGEVVSIPLPYSIISIWSLPFGLLLQQVADGNSLTH GPFKFSSPSLGSRDIIRNRRESGYSPQHSFSFLTAYDHLIKGESSSMSSHLILKDLLE EPQSIYIEERGKLNIMRDFDERTIWTSDLIPLMASYNKVKMQHSVWVAEVINSSLEVE NASVSAIVPTGVLPKRFCFRRIWQGKGAHTAASKVFLATDDDAAPVICFLLLEQKKLL SLRLQTVEINNEILFDVKPDMSWSIPAIAAAPVIVTRPGVKVGPLLYTDIIVLAPENI LLLYSGKLCLCRYLLPTCLGRGNLSHNIGFSGAASVPPHDLKIVGLADAVEAHINVKV NNRQMFRCALRRSPSSSLANDCITAMAEGLSPSFYNHFLVLLWGDGDSGYLSEANSTV GSEWNAFCDIIMQMCKKSSVVSQEIPKSSWEFLLNSKFHENYLKINSIIGLSSRIALD RPGLDSIRSNIDGSKNSEKSFYFDLLMESLDSLHAVYESLKMDNLRRRDLELLAILLC NIAKFLGEECYLDHYVRDFPALSKTVRMGTNSLSRKTPFSLFRWLENCLQHGCTPANS NYLPLVICKDGSSVVSWARKIVSFYSLLCGAKLIGKKLSSGVSCNIASGSFCSNEELT VLAMVGEKFGLKELDSLPSGVSLPLRHALDKCRESPPAGWPAAAYVLLGREDLALSCL AHSCKFKELETQTNVNLVSMSTPYMLHLHPVTIPSTVSDTIIPESTKFEDTDSIDGSM ADGMEHIFSCCTQLRYGRDLRLNEVRRLLCSARPVAIQTSVNPSASDQDLQQAQLWQL AQRTTALPLGRGAFTLATIYTLLTEAFTVPKLVLAGRLPAQQNATVNLDPSIRNIQEL KSLPEFHNAVAAGLRLAPLQGKVSRTWIVYNKPEEPNVIHAGLLLALGLHGFLHVLTI TDIYQYFSQEHESTTVGLMLGLAASYRGTMQPAISKCLYVHIPAQHPSSFPELELPTL LQTAALMSVGLLFEGSAHPQTMQTLLGEIGRRSGGDNVLEREGYAVSAGFSLGLVALG RGEDALGFMDTVVDRLFHYIGGKEIRNERSLLLAPSMDENNRGAGQMMDGTTVNVDVT APGAIIALALMFLKSESEVIVSRLTIPQTHFDLQYVRPDFIMLRVIARNLIMWARIHP SKDWIQSQIPEIVKNGVKGLRDDTMDIDEMDAETFVQAYVNIVAGACISLGLKFAGTK DANAQELLYEYAVYFLNEIKPISTTSGNTFPKGLSQYVDRGTLEICLHLVVLSLSVVM AGSGHLQTFRLLRFLRNRSSIDGHANYGIQMAVSLAIGFLFLGGGMRTFSTSNSSVAA LLITLYPRLPTGPNDNRCHLQAFRHMYVLATEARWLQTVDVDTGLPVYAPLEVTIRET EHYSETSFCEVTPCILPERSVLKTVRVCGPRYWPQVIELVPEDKPWWSFTDRNDPFNS GILHVKRKVGACSYVDDPIGCQSLLSRAMHKVFGLTTLTASNPSNNSNNGPAAVTVDQ LVSTFSSDPSLIAFAQLCCDLSWNSRYDADFQEFCLQVLFECISKDRPALLQVYLSLY ATIGSLAEQVSSSTVVVSNSLSVSSLKLALSYNEAVLSGRLTTSRGGIVQSIFLGSLR KRVEELLNCSEALKDDLRNYLNLGRWPSDPSFGVKSPALLSWYLQWFGVPAPPIIKTA VDKIKPKNISSSAAPLLRLLLPGTHVNAIEEIDRILFSS" CDS join(721176..721402,721525..721588,721720..721804, 722445..722731,722857..722962,723094..723254, 723503..723690,723775..723844,724068..724241, 724556..725034,725543..726002,726597..726935, 727225..727308,727734..727826,727931..727990, 728368..728466,728779..728919,729301..729381, 729555..729626,729871..729942,730559..730652, 730730..730812,731280..731336,731457..731534, 731665..731786,731888..732048,732190..732266, 732345..732458,732551..732652,733222..733362, 733584..733757,734069..734132,734218..734357, 734445..734602,735027..735105,736122..736508) /locus_tag="TCM_042482" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene20992" /codon_start=1 /product="E3 ubiquitin ligase isoform 2" /protein_id="EOY17744.1" /db_xref="TAIR:AT5G05560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHR5" /translation="MPVGVRQLTVLGEFKPFGLIAEALDGKPPDNSADNYDYLLFDPE IARQRDENLDNDASASALSDRRDHELFIRGNRIIWSVGSRVFKRFTLPSPVIKACWCR MGDMSEALLCVLQIDSLTIYNISGEVVSIPLPYSIISIWSLPFGLLLQQVADGNSLTH GPFKFSSPSLGSRDIIRNRRESGYSPQHSFSFLTAYDHLIKGESSSMSSHLILKDLLE EPQSIYIEERGKLNIMRDFDERTIWTSDLIPLMASYNKVKMQHSVWVAEVINSSLEVE NASVSAIVPTGVLPKRFCFRRIWQGKGAHTAASKVFLATDDDAAPVICFLLLEQKKLL SLRLQTVEINNEILFDVKPDMSWSIPAIAAAPVIVTRPGVKVGPLLYTDIIVLAPENI LLLYSGKLCLCRYLLPTCLGRGNLSHNIGFSGAASVPPHDLKIVGLADAVEAHINVKV NNRQMFRCALRRSPSSSLANDCITAMAEGLSPSFYNHFLVLLWGDGDSGYLSEANSTV GSEWNAFCDIIMQMCKKSSVVSQEIPKSSWEFLLNSKFHENYLKINSIIGLSSRIALD RPGLDSIRSNIDGSKNSEKSFYFDLLMESLDSLHAVYESLKMDNLRRRDLELLAILLC NIAKFLGEECYLDHYVRDFPALSKTVRMGTNSLSRKTPFSLFRWLENCLQHGCTPANS NYLPLVICKDGSSVVSWARKIVSFYSLLCGAKLIGKKLSSGVSCNIASGSFCSNEELT VLAMVGEKFGLKELDSLPSGVSLPLRHALDKCRESPPAGWPAAAYVLLGREDLALSCL AHSCKFKELETQTNVNLVSMSTPYMLHLHPVTIPSTVSDTIIPESTKFEDTDSIDGSM ADGMEHIFSCCTQLRYGRDLRLNEVRRLLCSARPVAIQTSVNPSASDQDLQQAQLWQL AQRTTALPLGRGAFTLATIYTLLTEAFTVPKLVLAGRLPAQQNATVNLDPSIRNIQEL KSLPEFHNAVAAGLRLAPLQGKVSRTWIVYNKPEEPNVIHAGLLLALGLHGFLHVLTI TDIYQYFSQEHESTTVGLMLGLAASYRGTMQPAISKCLYVHIPAQHPSSFPELELPTL LQTAALMSVGLLFEGSAHPQTMQTLLGEIGRRSGGDNVLEREGYAVSAGFSLGLVALG RGEDALGFMDTVVDRLFHYIGGKEIRNERSLLLAPSMDENNRGAGQMMDGTTVNVDVT APGAIIALALMFLKSESEVIVSRLTIPQTHFDLQYVRPDFIMLRVIARNLIMWARIHP SKDWIQSQIPEIVKNGVKGLRDDTMDIDEMDAETFVQAYVNIVAGACISLGLKFAGTK DANAQELLYEYAVYFLNEIKPISTTSGNTFPKGLSQYVDRGTLEICLHLVVLSLSVVM AGSGHLQTFRLLRFLRNRSSIDGHANYGIQMAVSLAIGFLFLGGGMRTFSTSNSSVAA LLITLYPRLPTGPNDNRCHLQAFRHMYVLATEARWLQTVDVDTGLPVYAPLEVTIRET EHYSETSFCEVTPCILPERSVLKTVRVCGPRYWPQVIELVPEDKPWWSFTDRNDPFNS GILHVKRKVGACSYVDDPIGCQSLLSRAMHKVFGLTTLTASNPSNNSNNGPAAVTVDQ LVSTFSSDPSLIAFAQLCCDLSWNSRYDADFQEFCLQVLFECISKDRPALLQLALSYN EAVLSGRLTTSRGGIVQSIFLGSLRKRVEELLNCSEALKDDLRNYLNLGRWPSDPSFG VKSPALLSWYLQWFGVPAPPIIKTAVDKIKPKNISSSAAPLLRLLLPGTHVNAIEEID RILFSS" CDS join(721176..721402,721525..721588,721720..721804, 722445..722731,722857..722962,723094..723254, 723503..723690,723775..723844,724068..724241, 724556..725034,725543..726002,726597..726935, 727225..727308,727734..727826,727931..727990, 728368..728466,728779..728919,729301..729381, 729555..729626,729871..729942,730559..730652, 730730..730812,731280..731336,731457..731534, 731665..731786,731888..732048,732190..732266, 732345..732458,732551..732652,733222..733362, 733584..733757,734069..734132,734218..734357, 734445..734600,736251..736508) /locus_tag="TCM_042482" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="E3 ubiquitin ligase isoform 3" /protein_id="EOY17745.1" /db_xref="TAIR:AT5G05560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHR5" /translation="MPVGVRQLTVLGEFKPFGLIAEALDGKPPDNSADNYDYLLFDPE IARQRDENLDNDASASALSDRRDHELFIRGNRIIWSVGSRVFKRFTLPSPVIKACWCR MGDMSEALLCVLQIDSLTIYNISGEVVSIPLPYSIISIWSLPFGLLLQQVADGNSLTH GPFKFSSPSLGSRDIIRNRRESGYSPQHSFSFLTAYDHLIKGESSSMSSHLILKDLLE EPQSIYIEERGKLNIMRDFDERTIWTSDLIPLMASYNKVKMQHSVWVAEVINSSLEVE NASVSAIVPTGVLPKRFCFRRIWQGKGAHTAASKVFLATDDDAAPVICFLLLEQKKLL SLRLQTVEINNEILFDVKPDMSWSIPAIAAAPVIVTRPGVKVGPLLYTDIIVLAPENI LLLYSGKLCLCRYLLPTCLGRGNLSHNIGFSGAASVPPHDLKIVGLADAVEAHINVKV NNRQMFRCALRRSPSSSLANDCITAMAEGLSPSFYNHFLVLLWGDGDSGYLSEANSTV GSEWNAFCDIIMQMCKKSSVVSQEIPKSSWEFLLNSKFHENYLKINSIIGLSSRIALD RPGLDSIRSNIDGSKNSEKSFYFDLLMESLDSLHAVYESLKMDNLRRRDLELLAILLC NIAKFLGEECYLDHYVRDFPALSKTVRMGTNSLSRKTPFSLFRWLENCLQHGCTPANS NYLPLVICKDGSSVVSWARKIVSFYSLLCGAKLIGKKLSSGVSCNIASGSFCSNEELT VLAMVGEKFGLKELDSLPSGVSLPLRHALDKCRESPPAGWPAAAYVLLGREDLALSCL AHSCKFKELETQTNVNLVSMSTPYMLHLHPVTIPSTVSDTIIPESTKFEDTDSIDGSM ADGMEHIFSCCTQLRYGRDLRLNEVRRLLCSARPVAIQTSVNPSASDQDLQQAQLWQL AQRTTALPLGRGAFTLATIYTLLTEAFTVPKLVLAGRLPAQQNATVNLDPSIRNIQEL KSLPEFHNAVAAGLRLAPLQGKVSRTWIVYNKPEEPNVIHAGLLLALGLHGFLHVLTI TDIYQYFSQEHESTTVGLMLGLAASYRGTMQPAISKCLYVHIPAQHPSSFPELELPTL LQTAALMSVGLLFEGSAHPQTMQTLLGEIGRRSGGDNVLEREGYAVSAGFSLGLVALG RGEDALGFMDTVVDRLFHYIGGKEIRNERSLLLAPSMDENNRGAGQMMDGTTVNVDVT APGAIIALALMFLKSESEVIVSRLTIPQTHFDLQYVRPDFIMLRVIARNLIMWARIHP SKDWIQSQIPEIVKNGVKGLRDDTMDIDEMDAETFVQAYVNIVAGACISLGLKFAGTK DANAQELLYEYAVYFLNEIKPISTTSGNTFPKGLSQYVDRGTLEICLHLVVLSLSVVM AGSGHLQTFRLLRFLRNRSSIDGHANYGIQMAVSLAIGFLFLGGGMRTFSTSNSSVAA LLITLYPRLPTGPNDNRCHLQAFRHMYVLATEARWLQTVDVDTGLPVYAPLEVTIRET EHYSETSFCEVTPCILPERSVLKTVRVCGPRYWPQVIELVPEDKPWWSFTDRNDPFNS GILHVKRKVGACSYVDDPIGCQSLLSRAMHKVFGLTTLTASNPSNNSNNGPAAVTVDQ LVSTFSSDPSLIAFAQLCCDLSWNSLKDDLRNYLNLGRWPSDPSFGVKSPALLSWYLQ WFGVPAPPIIKTAVDKIKPKNISSSAAPLLRLLLPGTHVNAIEEIDRILFSS" mobile_element 722169..722236 /note="source:scaffold_8_CACTA_0856 1117 1179" /mobile_element_type="transposon:TIR/CACTA" gene complement(737415..739978) /locus_tag="TCM_042483" /note="dbxref CacaoGD:Thecc1EG042483" mRNA complement(join(737415..738388,738493..738651, 738768..738967,739138..739309,739392..739978)) /locus_tag="TCM_042483" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29814.m000724" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046948t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19460.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9795t3" CDS complement(join(738040..738388,738493..738651, 738768..738967,739138..739309,739392..739897)) /locus_tag="TCM_042483" /note="paralog of Thecc1EG046948t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17746.1" /db_xref="Phytozome:POPTR_0010s19460.1" /db_xref="TAIR:AT2G40160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCB8" /translation="MKKVGMTQRCNYSPILTIVVFSTLFFGFFSYKEYRKMIPVPDFK HQKPFPESSNTSNVGIQETDKEHNDGKAKVETKGGIEEKFQDSNDSNLITVEEEEDDG ANKRIVFPLEECDIFKGEWVFDNGTHPLYKEEECEFLTEMGTCQKNGRPDSLYQKWRW QPRDCSLPKFDAKLLLGKLQGKRLMFVGDSIHFSQMLSLVCMVQSVIPPEKKSFSYGR YTTVFKMEEYNATMEFYWAPFLVESNVDPPTRRDGTVDPVIKLESISKHGDNWKNVDY LIFNTYIWWRYPTMKVLRGSFDDGVTDYVEINQNIAYESVLRSWGKWLEENVDSNHTS VFFSSPAPSHIKSSAWNNTSGIKCSNETTPILNISTSLDVGTNRWLFAIAVNVSRSLE IPVHFLDITTLSEYRKDAHTSIYAAPGGKLLTQEQKSDPATYADCVHWCLPGLPDTWN ELLYTLIISQT" gene complement(740616..743337) /locus_tag="TCM_046947" /note="dbxref CacaoGD:Thecc1EG046947" mRNA complement(join(740616..741188,741270..741428, 741546..741745,742115..742286,742391..742774, 742862..742968,743129..743337)) /locus_tag="TCM_046947" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29814.m000723" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046948t1" /inference="similar to AA sequence:ricco:29814.m000723" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc347t4_C1" CDS complement(join(740840..741188,741270..741428, 741546..741745,742115..742286,742391..742764)) /locus_tag="TCM_046947" /note="dbxref ricco:29814.m000723; paralog of Thecc1EG046948t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17747.1" /db_xref="TAIR:AT3G55990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCB8" /translation="MKHSCCSISHKSKSYYQVLVLVSLILILLFKWFIYKGDFRQVAR SIFLSRFRPLGILEEDGEVKLPPKDCDVFTGNWVFDNITHPLYKEEECEFLSEQVTCI RNGRQDSLYQNWRWQPRDCSLPKFKARLLLEKLRGKRLMFVGDSLNRNQWESMVCLLQ SAVPPGKKSLRKSGSLVIFSIEEYNTTVEFYWAPFLVESNSDNPWRHSVKDRIIMPES IKNRGDDWKGVDYLVFNTYIWWMNTGYMKVLRGSFDADPIEYDEIKRPIAYGRVLKTW ANWVEANVDSKFTSVYFMSMSPLHIKSLDWNNPDGIRCAKEALPVLNMSTPPNVGTDH RLFLAVANVTRSMKVPVYFLNITTLSEYRKDAHTSVYTTRQGQLITPEQQADPDTYAD CIHWCLPGLPDTWNELLYTHIISHS" gene complement(744650..747960) /locus_tag="TCM_046948" /note="dbxref CacaoGD:Thecc1EG046948" mRNA complement(join(744650..745223,745863..746021, 746135..746334,746734..746905,746993..747804)) /locus_tag="TCM_046948" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g06370.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046947t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06990.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc225t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc225t1" mRNA complement(join(744842..745040,745122..745223, 745863..746021,746135..746334,746734..746905, 746993..747960)) /locus_tag="TCM_046948" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g06370.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046947t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06990.1" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc225t1" CDS complement(join(744875..745040,745122..745223, 745863..746021,746135..746334,746734..746905, 746993..747660)) /locus_tag="TCM_046948" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046947t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY17749.1" /db_xref="Phytozome:POPTR_0008s06990.1" /db_xref="TAIR:AT3G55990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCB8" /translation="MQPGRRKTLFTETGVMKHRKNNNLSIFVVVFSIFLFGVFMYNED VKSIAEFPFSRPKGSDIQEERSKQGNPVQEGIKNEKENAVSLNSRTSVEEEEEDNTKR KIPDEKTKEPDDLKSMVVKDDEQRLPVEEDKEDEEEKIEEKVEEQKTELPVIEEDDED VELPPEDCDLFTGQWVFDNETHPLYQEDECEFLTAQVTCMRNGRKDSLYQNWRWQPRD CNLPKYKPRLLLEKLRNKRLMFVGDSLNRNQWESMVCLVQSVVPSGRKSLNKSGSLSV FRIEDYNATVEFYWAPFLVQSNSDDPNMHSILNRIIMPESIKKHGKNWKDVDYLVFNT YIWWMNTFTMKVLRGSFDKGDTEYDEIERPVAYNRVLTTWSKWVDKNVNPNRTTVFFS SMSPLHIKSLDWNNPDGIKCALETTPILNQSMYLNVGTDRRLKDAHTSVYTIRQGKML SPEQKADPATYADCIHWCLPGLPDTWNEFIYTRIISHS" CDS complement(join(744875..745223,745863..746021, 746135..746334,746734..746905,746993..747660)) /locus_tag="TCM_046948" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046947t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY17748.1" /db_xref="Phytozome:POPTR_0008s06990.1" /db_xref="TAIR:AT3G55990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCB8" /translation="MQPGRRKTLFTETGVMKHRKNNNLSIFVVVFSIFLFGVFMYNED VKSIAEFPFSRPKGSDIQEERSKQGNPVQEGIKNEKENAVSLNSRTSVEEEEEDNTKR KIPDEKTKEPDDLKSMVVKDDEQRLPVEEDKEDEEEKIEEKVEEQKTELPVIEEDDED VELPPEDCDLFTGQWVFDNETHPLYQEDECEFLTAQVTCMRNGRKDSLYQNWRWQPRD CNLPKYKPRLLLEKLRNKRLMFVGDSLNRNQWESMVCLVQSVVPSGRKSLNKSGSLSV FRIEDYNATVEFYWAPFLVQSNSDDPNMHSILNRIIMPESIKKHGKNWKDVDYLVFNT YIWWMNTFTMKVLRGSFDKGDTEYDEIERPVAYNRVLTTWSKWVDKNVNPNRTTVFFS SMSPLHIKSLDWNNPDGIKCALETTPILNQSMYLNVGTDRRLYVVATNITQNMKVPVH FIDITSLSEYRKDAHTSVYTIRQGKMLSPEQKADPATYADCIHWCLPGLPDTWNEFIY TRIISHS" gene complement(750456..752469) /locus_tag="TCM_042485" /note="dbxref CacaoGD:Thecc1EG042485" mRNA complement(join(750456..751038,751431..752469)) /locus_tag="TCM_042485" /product="2-oxoglutarate and Fe(II)-dependent oxygenase domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06980.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06980.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8543t1" CDS complement(join(750721..751038,751431..752228)) /locus_tag="TCM_042485" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase domain-containing protein, putative" /protein_id="EOY17750.1" /db_xref="Phytozome:POPTR_0008s06980.1" /db_xref="TAIR:AT3G11150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GX26" /translation="MASSTHKQQQHLPNLYGATAAPPPTPSGQPNHHLVTSSATADAL SKLLHRLPPTLSLPTHRSAPSTASPRTVSFSDPNLKDLLLSSGSKVGFFQLTSHDVSS QLANSAETESLSLFELPKEQKESCFPKNWPLGFDADEEEGGDEKGESFCLDATCSTEL TNLSLSSLREFTRALEKLGLKIIDTLANAVGFENPIGEDPTRFCSLMWILEGLHGDDK PSGGFYPFVIGLQYQIRCQQYSLLSESGWVSVSPEVDSIMVTLGDIAQVWSNGKLRKV RGRPVAACLDDGNNSRHVSMSLLLTLPMDSQVAPLLTKVIADDENASDDEIRDDEIGT EGKKEGRLFRSFSFEDYAWRVYHECLLFKDPLDRYRI" gene 754345..764221 /locus_tag="TCM_042486" /note="dbxref CacaoGD:Thecc1EG042486" mRNA join(754345..754948,755085..755215,755445..755529, 755807..755860,756026..756117,756232..756335, 756655..756730,757171..757627,758273..758608, 758728..758937,759057..759155,759255..759327, 760233..760360,760468..760762,760843..761057, 761141..761265,761415..761532,762076..762131, 762248..762341,762426..762615,762696..762764, 762844..762947,763028..763090,763241..764072) /locus_tag="TCM_042486" /product="Transducin family protein / WD-40 repeat family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032802001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021676t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032802001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg690t5" mRNA join(754635..754948,755085..755215,755445..755529, 755807..755860,756026..756117,756232..756335, 756655..756730,757171..757627,758273..758608, 758728..758937,759057..759155,759255..759327, 760233..760360,760468..760762,760843..761265, 761415..761532,762076..762131,762248..762341, 762426..762615,762696..762764,762844..762947, 763028..763090,763241..763506) /locus_tag="TCM_042486" /product="Transducin family protein / WD-40 repeat family protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032802001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021676t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032802001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc777t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg690t5" mRNA join(754635..754948,755085..755215,755445..755529, 755807..755860,756026..756117,756232..756335, 756655..756730,757171..757627,758273..758608, 758728..758937,759057..759155,759255..759327, 760233..760360,760468..760762,760843..761057, 761141..761265,761415..761532,762076..762131, 762248..762341,762426..762764,762844..762947, 763028..763090,763241..763506) /locus_tag="TCM_042486" /product="Transducin family protein / WD-40 repeat family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032802001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021676t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032802001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc777t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg690t5" mRNA join(754635..754948,755085..755215,755445..755529, 755807..755860,756026..756117,756232..756335, 756655..756730,757171..757627,758273..758608, 758728..758937,759057..759155,759255..759327, 760233..760360,760468..760762,760843..761057, 761141..761265,761415..761532,762248..762341, 762426..762615,762696..762764,762844..762947, 763028..763090,763241..763506) /locus_tag="TCM_042486" /product="Transducin family protein / WD-40 repeat family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032802001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021676t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032802001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc777t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg690t5" CDS join(754898..754948,755085..755215,755445..755529, 755807..755860,756026..756117,756232..756335, 756655..756730,757171..757627,758273..758608, 758728..758937,759057..759155,759255..759327, 760233..760360,760468..760762,760843..761057, 761141..761265,761415..761532,762076..762131, 762248..762341,762426..762615,762696..762764, 762844..762947,763028..763090,763241..763348) /locus_tag="TCM_042486" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021676t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein, putative isoform 1" /protein_id="EOY17751.1" /db_xref="Phytozome:GSVIVT01032802001" /db_xref="TAIR:AT5G05570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFF8" /translation="MFTKFFDNHGASPQSPKSDVAKGSLTSADLNPRVTVHYGIPATA SVLACDLIQRLVAVGTLDGRIKVIGGENIEALLVSPKQLPIKNLEFLQNQGFLVSVSN ENEIQVWDLEQRQIASHIQWESNITAFKVIHGTSYMYLGDEHGMVYVIKYDAEEHKLA HLPYYVPTNVIAEEAGISSPNHPSVVGVLPQPCSQGNRVLIAYENGLLAIWDISEDRV VLVRGNKDLQLKGRTTSDSPEEKKLEVSDCTSDGDEVKEISSLCWASNDGSILAVGYV DGDIMFWNLSTANPKRIQQAEKSPNNVVKLQLSSGEKRLPVIVLHWSANQSCGDHGCK LFVYGGDNVGSEEVLTILSLEWTSGIESLKCVSRMDLTPNGSFADMVLLPTVGVTESG GNLLFMLTNPGQLHVYDDACLAALLSQQEKTTCVSSGQYVMPIPTVDPCMTVSKLALV YRDGEFSKALSKIVSATKLKAPHTPATGSRRWPLTGGFPSLLSETADYQVERVYVAGY QDGSVRIWDATYPALSLIFVLGTEVPGFDVAVASASVSALEICSLTQSVAIGNECGMV RLYKLTVTSDEMSLNIVKETEKEVHTLHQTDGPQCLAVFSLLNSPVCVLQFAKFGTRL AVGFNCGRVAMVDVSTFSVLFITDSLSPSNCPVGLSAMISFTDNDTLVNSPRDSVSTS LNDNEKWLAFVMTKDAYLTVLDGTTGNVVSSLSIPLKAESSAISMYILEGGNIVSTVP SEISETKFEPAHSSPDHGITPVEAKSEISAQVAYFGQRLKSLLILLCFEDALHLCSMK SVIQGTADSIWAVNLPKQCSWTSAFKIDDKECGLVLLYRTGVLEIRSMKTLEVMGESS LMTILRWNFKTNMEKIICSSNRGQIILIHGCEFAAISILALENEFRIPDSLPCIHDTV LAAAFDATVSLSPSQKKSQDTAPGILGGLIKGSRVGKLDQNVQIQEACKNDFSHLESI FSSPPFLKPSMASTDWQEVLDLNIDDIQIDEPVTISSSSEKIKNDSKEQRTERERLFE GAGTDAKPRLRTAEEIRAKYRGAEDAAAAAASARDRLVERQEKLERINERTQELQSGA ENFASMANELAKRMEKKKWWNL" CDS join(754898..754948,755085..755215,755445..755529, 755807..755860,756026..756117,756232..756335, 756655..756730,757171..757627,758273..758608, 758728..758937,759057..759155,759255..759327, 760233..760360,760468..760762,760843..761057, 761141..761265,761415..761532,762076..762131, 762248..762341,762426..762677) /locus_tag="TCM_042486" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021676t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein, putative isoform 2" /protein_id="EOY17752.1" /db_xref="Phytozome:GSVIVT01032802001" /db_xref="TAIR:AT5G05570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHQ9" /translation="MFTKFFDNHGASPQSPKSDVAKGSLTSADLNPRVTVHYGIPATA SVLACDLIQRLVAVGTLDGRIKVIGGENIEALLVSPKQLPIKNLEFLQNQGFLVSVSN ENEIQVWDLEQRQIASHIQWESNITAFKVIHGTSYMYLGDEHGMVYVIKYDAEEHKLA HLPYYVPTNVIAEEAGISSPNHPSVVGVLPQPCSQGNRVLIAYENGLLAIWDISEDRV VLVRGNKDLQLKGRTTSDSPEEKKLEVSDCTSDGDEVKEISSLCWASNDGSILAVGYV DGDIMFWNLSTANPKRIQQAEKSPNNVVKLQLSSGEKRLPVIVLHWSANQSCGDHGCK LFVYGGDNVGSEEVLTILSLEWTSGIESLKCVSRMDLTPNGSFADMVLLPTVGVTESG GNLLFMLTNPGQLHVYDDACLAALLSQQEKTTCVSSGQYVMPIPTVDPCMTVSKLALV YRDGEFSKALSKIVSATKLKAPHTPATGSRRWPLTGGFPSLLSETADYQVERVYVAGY QDGSVRIWDATYPALSLIFVLGTEVPGFDVAVASASVSALEICSLTQSVAIGNECGMV RLYKLTVTSDEMSLNIVKETEKEVHTLHQTDGPQCLAVFSLLNSPVCVLQFAKFGTRL AVGFNCGRVAMVDVSTFSVLFITDSLSPSNCPVGLSAMISFTDNDTLVNSPRDSVSTS LNDNEKWLAFVMTKDAYLTVLDGTTGNVVSSLSIPLKAESSAISMYILEGGNIVSTVP SEISETKFEPAHSSPDHGITPVEAKSEISAQVAYFGQRLKSLLILLCFEDALHLCSMK SVIQGTADSIWAVNLPKQCSWTSAFKIDDKECGLVLLYRTGVLEIRSMKTLEVMGESS LMTILRWNFKTNMEKIICSSNRGQIILIHGCEFAAISILALENEFRIPDSLPCIHDTV LAAAFDATVSLSPSQKKSQDTAPGILGGLIKGSRVGKLDQNVQIQEACKNDFSHLESI FSSPPFLKPSMASTDWQEVLDLNIGSILSLTFLYCPLATFFFLT" CDS join(754898..754948,755085..755215,755445..755529, 755807..755860,756026..756117,756232..756335, 756655..756730,757171..757627,758273..758608, 758728..758937,759057..759155,759255..759327, 760233..760360,760468..760762,760843..761057, 761141..761265,761415..761532,762248..762277) /locus_tag="TCM_042486" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021676t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein, putative isoform 3" /protein_id="EOY17753.1" /db_xref="Phytozome:GSVIVT01032802001" /db_xref="TAIR:AT5G05570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFF8" /translation="MFTKFFDNHGASPQSPKSDVAKGSLTSADLNPRVTVHYGIPATA SVLACDLIQRLVAVGTLDGRIKVIGGENIEALLVSPKQLPIKNLEFLQNQGFLVSVSN ENEIQVWDLEQRQIASHIQWESNITAFKVIHGTSYMYLGDEHGMVYVIKYDAEEHKLA HLPYYVPTNVIAEEAGISSPNHPSVVGVLPQPCSQGNRVLIAYENGLLAIWDISEDRV VLVRGNKDLQLKGRTTSDSPEEKKLEVSDCTSDGDEVKEISSLCWASNDGSILAVGYV DGDIMFWNLSTANPKRIQQAEKSPNNVVKLQLSSGEKRLPVIVLHWSANQSCGDHGCK LFVYGGDNVGSEEVLTILSLEWTSGIESLKCVSRMDLTPNGSFADMVLLPTVGVTESG GNLLFMLTNPGQLHVYDDACLAALLSQQEKTTCVSSGQYVMPIPTVDPCMTVSKLALV YRDGEFSKALSKIVSATKLKAPHTPATGSRRWPLTGGFPSLLSETADYQVERVYVAGY QDGSVRIWDATYPALSLIFVLGTEVPGFDVAVASASVSALEICSLTQSVAIGNECGMV RLYKLTVTSDEMSLNIVKETEKEVHTLHQTDGPQCLAVFSLLNSPVCVLQFAKFGTRL AVGFNCGRVAMVDVSTFSVLFITDSLSPSNCPVGLSAMISFTDNDTLVNSPRDSVSTS LNDNEKWLAFVMTKDAYLTVLDGTTGNVVSSLSIPLKAESSAISMYILEGGNIVSTVP SEISETKFEPAHSSPDHGITPVEAKSEISAQVAYFGQRLKSLLILLCFEDALHLCSMK SVIQGTADSIWAVNLPKQCSWTSAFKIDDKECGLVLLYRTGVLEIRSMKTLEVMGESS LMTILRWNFKTNMEKIICSSNRGQIILDSGFFAMHS" CDS join(754898..754948,755085..755215,755445..755529, 755807..755860,756026..756117,756232..756335, 756655..756730,757171..757627,758273..758608, 758728..758937,759057..759155,759255..759327, 760233..760360,760468..760762,760843..761114) /locus_tag="TCM_042486" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021676t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein, putative isoform 4" /protein_id="EOY17754.1" /db_xref="Phytozome:GSVIVT01032802001" /db_xref="TAIR:AT5G05570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFF8" /translation="MFTKFFDNHGASPQSPKSDVAKGSLTSADLNPRVTVHYGIPATA SVLACDLIQRLVAVGTLDGRIKVIGGENIEALLVSPKQLPIKNLEFLQNQGFLVSVSN ENEIQVWDLEQRQIASHIQWESNITAFKVIHGTSYMYLGDEHGMVYVIKYDAEEHKLA HLPYYVPTNVIAEEAGISSPNHPSVVGVLPQPCSQGNRVLIAYENGLLAIWDISEDRV VLVRGNKDLQLKGRTTSDSPEEKKLEVSDCTSDGDEVKEISSLCWASNDGSILAVGYV DGDIMFWNLSTANPKRIQQAEKSPNNVVKLQLSSGEKRLPVIVLHWSANQSCGDHGCK LFVYGGDNVGSEEVLTILSLEWTSGIESLKCVSRMDLTPNGSFADMVLLPTVGVTESG GNLLFMLTNPGQLHVYDDACLAALLSQQEKTTCVSSGQYVMPIPTVDPCMTVSKLALV YRDGEFSKALSKIVSATKLKAPHTPATGSRRWPLTGGFPSLLSETADYQVERVYVAGY QDGSVRIWDATYPALSLIFVLGTEVPGFDVAVASASVSALEICSLTQSVAIGNECGMV RLYKLTVTSDEMSLNIVKETEKEVHTLHQTDGPQCLAVFSLLNSPVCVLQFAKFGTRL AVGFNCGRVAMVDVSTFSVLFITDSLSPSNCPVGLSAMISFTDNDTLVNSPRDSVSTS LNDNEKWLAFVMTKDAYLTVLDGTTGNVVSSLSIPLKAESSAISMYILEGGNIVSTVP SEISETKFEPAHSSPDHGITPVEAKSEISAQVAYFGQRLKSLLILLCFEDALHLCSMK SVIQVSYLMLFLFQVQYICKFF" mRNA join(756024..756117,756232..756335,756655..756730, 757171..757627,758273..758608,758728..758937, 759057..759155,759255..759327,760233..760360, 760468..760762,760843..761057,761141..761265, 761415..761532,762076..762131,762248..762341, 762426..762596,762696..762719,763263..764221) /locus_tag="TCM_042486" /product="Transducin family protein / WD-40 repeat family protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032802001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021676t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19500.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9032t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg690t5" CDS join(756116..756117,756232..756335,756655..756730, 757171..757627,758273..758608,758728..758937, 759057..759155,759255..759327,760233..760360, 760468..760762,760843..761057,761141..761265, 761415..761532,762076..762131,762248..762341, 762426..762596,762696..762719,763263..763478) /locus_tag="TCM_042486" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG021676t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein, putative isoform 5" /protein_id="EOY17755.1" /db_xref="Phytozome:POPTR_0010s19500.2" /db_xref="TAIR:AT5G05570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHQ9" /translation="MYLGDEHGMVYVIKYDAEEHKLAHLPYYVPTNVIAEEAGISSPN HPSVVGVLPQPCSQGNRVLIAYENGLLAIWDISEDRVVLVRGNKDLQLKGRTTSDSPE EKKLEVSDCTSDGDEVKEISSLCWASNDGSILAVGYVDGDIMFWNLSTANPKRIQQAE KSPNNVVKLQLSSGEKRLPVIVLHWSANQSCGDHGCKLFVYGGDNVGSEEVLTILSLE WTSGIESLKCVSRMDLTPNGSFADMVLLPTVGVTESGGNLLFMLTNPGQLHVYDDACL AALLSQQEKTTCVSSGQYVMPIPTVDPCMTVSKLALVYRDGEFSKALSKIVSATKLKA PHTPATGSRRWPLTGGFPSLLSETADYQVERVYVAGYQDGSVRIWDATYPALSLIFVL GTEVPGFDVAVASASVSALEICSLTQSVAIGNECGMVRLYKLTVTSDEMSLNIVKETE KEVHTLHQTDGPQCLAVFSLLNSPVCVLQFAKFGTRLAVGFNCGRVAMVDVSTFSVLF ITDSLSPSNCPVGLSAMISFTDNDTLVNSPRDSVSTSLNDNEKWLAFVMTKDAYLTVL DGTTGNVVSSLSIPLKAESSAISMYILEGGNIVSTVPSEISETKFEPAHSSPDHGITP VEAKSEISAQVAYFGQRLKSLLILLCFEDALHLCSMKSVIQGTADSIWAVNLPKQCSW TSAFKIDDKECGLVLLYRTGVLEIRSMKTLEVMGESSLMTILRWNFKTNMEKIICSSN RGQIILIHGCEFAAISILALENEFRIPDSLPCIHDTVLAAAFDATVSLSPSQKKSQDT APGILGGLIKGSRVGKLDQNVQIQEACKNDFSHLESIFSSPPFLKPSMASTDWQEMTS KLTNLSYKAGLRTLPPWQMNLPREWKRKSGGIYELGWLPNEPIEHSAKVAAIVIIKFL WCEIKIICYNPCTRAFSQ" gene 764674..767915 /locus_tag="TCM_042487" /note="dbxref CacaoGD:Thecc1EG042487" mRNA join(764674..765787,766011..766100,766271..766337, 766436..766528,766625..766810,766909..766989, 767111..767248,767354..767568,767720..767787) /locus_tag="TCM_042487" /product="Fatty acid desaturase 8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021677t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s06960.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01761t00002" mobile_element complement(764852..764928) /note="source:CACAO_M_E11804_F2_scaffold_2 5319 5398" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(765159..765787,766011..766100,766271..766337, 766436..766528,766625..766810,766909..766989, 767111..767248,767354..767876) /locus_tag="TCM_042487" /product="Fatty acid desaturase 8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021677t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s06960.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01761t00001; alternateUTRof:Thecc1EG042487t1; inference alignment:Newbler:10:TSA:cgbaB_g01761t00002" CDS join(765258..765787,766011..766100,766271..766337, 766436..766528,766625..766810,766909..766989, 767111..767248,767354..767539) /locus_tag="TCM_042487" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021677t2" /codon_start=1 /product="Fatty acid desaturase 8 isoform 1" /protein_id="EOY17756.1" /db_xref="Phytozome:POPTR_0008s06960.1" /db_xref="TAIR:AT5G05580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P46310" /translation="MASWVLSECGLRPLPRIEVYPKPRNALALNNNNFFKLRTLPGSK ASNSFGSSFKVSTCSRDETRRVLNVSAPLKVATTSEDDKDKETIIGVTGMEDDGEFNP GAQPPFKLADIRAAIPKHCWVKDPWRSISYVVRDVVVVFGLAAVAAYFNNWLVWPLYW IAQGTMFWAVFVLGHDCGHGSFSNNPALNSVVGHLLHSSILVPYHGWRISHRTHHQNH GHVENDESWHPLSEKIYKSIDNATRLLRFTLPFPMLAYPFYLWGRSPGKKGSHFHPDS DLFVPNERKDVITSTVCWTAMVGLLAYLSFAMGPIQLLKLYGIPYWIFVMWLDLVTYL HHHGHEEKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHL IEATEAARPVLREHYRKPTKSGPIPFHLFGILVRSMKQDHYVSDTGDVVYYQTDPQLY GTSKSD" CDS join(765258..765787,766011..766100,766271..766337, 766436..766528,766625..766810,766909..766989, 767111..767248,767354..767539) /locus_tag="TCM_042487" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021677t2" /codon_start=1 /product="Fatty acid desaturase 8 isoform 1" /protein_id="EOY17757.1" /db_xref="Phytozome:POPTR_0008s06960.1" /db_xref="TAIR:AT5G05580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P46310" /translation="MASWVLSECGLRPLPRIEVYPKPRNALALNNNNFFKLRTLPGSK ASNSFGSSFKVSTCSRDETRRVLNVSAPLKVATTSEDDKDKETIIGVTGMEDDGEFNP GAQPPFKLADIRAAIPKHCWVKDPWRSISYVVRDVVVVFGLAAVAAYFNNWLVWPLYW IAQGTMFWAVFVLGHDCGHGSFSNNPALNSVVGHLLHSSILVPYHGWRISHRTHHQNH GHVENDESWHPLSEKIYKSIDNATRLLRFTLPFPMLAYPFYLWGRSPGKKGSHFHPDS DLFVPNERKDVITSTVCWTAMVGLLAYLSFAMGPIQLLKLYGIPYWIFVMWLDLVTYL HHHGHEEKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHL IEATEAARPVLREHYRKPTKSGPIPFHLFGILVRSMKQDHYVSDTGDVVYYQTDPQLY GTSKSD" mRNA join(<765275..765787,766011..766100,766271..766337, 766436..766528,766625..766810,766909..766989, 767111..767197,767354..767568,767720..767915) /locus_tag="TCM_042487" /product="Fatty acid desaturase 8 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021677t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s06960.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00369t00001; inference alignment:Newbler:10:TSA:cgbaB_g01761t00002" CDS join(<765276..765787,766011..766100,766271..766337, 766436..766528,766625..766810,766909..766989, 767111..767197,767354..767539) /locus_tag="TCM_042487" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021677t2" /codon_start=1 /product="Fatty acid desaturase 8 isoform 3" /protein_id="EOY17758.1" /db_xref="Phytozome:POPTR_0008s06960.1" /db_xref="TAIR:AT5G05580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P46310" /translation="SECGLRPLPRIEVYPKPRNALALNNNNFFKLRTLPGSKASNSFG SSFKVSTCSRDETRRVLNVSAPLKVATTSEDDKDKETIIGVTGMEDDGEFNPGAQPPF KLADIRAAIPKHCWVKDPWRSISYVVRDVVVVFGLAAVAAYFNNWLVWPLYWIAQGTM FWAVFVLGHDCGHGSFSNNPALNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVEND ESWHPLSEKIYKSIDNATRLLRFTLPFPMLAYPFYLWGRSPGKKGSHFHPDSDLFVPN ERKDVITSTVCWTAMVGLLAYLSFAMGPIQLLKLYGIPYWIFVMWLDLVTYLHHHGHE EKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHTEAARPVLREHYRKPTKSGP IPFHLFGILVRSMKQDHYVSDTGDVVYYQTDPQLYGTSKSD" gene complement(768188..770768) /locus_tag="TCM_042488" /note="dbxref CacaoGD:Thecc1EG042488" mRNA complement(join(768188..768726,769341..769504, 769585..769949,770023..770085,770592..770768)) /locus_tag="TCM_042488" /product="N-(5'-phosphoribosyl)anthranilate isomerase isoform 2" /inference="alignment:exonerate- protein:2:ricco:29814.m000718" /inference="similar to AA sequence:ricco:29814.m000718" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg569t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg569t3; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc52t8" mRNA complement(join(768188..768726,769341..769504, 769585..769952,770023..770085,770592..770768)) /locus_tag="TCM_042488" /product="N-(5'-phosphoribosyl)anthranilate isomerase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29814.m000718" /inference="similar to AA sequence:ricco:29814.m000718" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg569t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg569t3" CDS complement(join(768501..768726,769341..769504, 769585..769949,770023..770085,770592..770601)) /locus_tag="TCM_042488" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29814.m000718" /codon_start=1 /product="N-(5'-phosphoribosyl)anthranilate isomerase isoform 2" /protein_id="EOY17760.1" /db_xref="TAIR:AT1G07780.5" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T4N6" /translation="MLSGLTTGSQFRPKVLNLHRMQIDGSRGGTLPFVRIRSFPKNKI RCNIVQLNQVFSTDGEHEKNHALVKMCGITSARDAAMAAEAGAKLIGMILWPKSKRSV SLSVAKEISKVAREFGAKPVGVFVDDDVDTILRASDAADLEFVQLHGDVSRAAFPKLV QENKIIYVLHANQDGDLQNQISDEDCSLVDWILVDSAAGGSGKGFNWTQFKLPPIKSK HGWLLAGGINPDNVCEAINTLRPHGVDVSSGICTSDGIQKDQSRIFSFMSAVRAIPY" CDS complement(join(768501..768726,769341..769504, 769585..769952,770023..770085,770592..770601)) /locus_tag="TCM_042488" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29814.m000718" /codon_start=1 /product="N-(5'-phosphoribosyl)anthranilate isomerase isoform 1" /protein_id="EOY17759.1" /db_xref="TAIR:AT1G07780.5" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T4N6" /translation="MLSGLTTGSQFRPKVLNLHRMQIDAGSRGGTLPFVRIRSFPKNK IRCNIVQLNQVFSTDGEHEKNHALVKMCGITSARDAAMAAEAGAKLIGMILWPKSKRS VSLSVAKEISKVAREFGAKPVGVFVDDDVDTILRASDAADLEFVQLHGDVSRAAFPKL VQENKIIYVLHANQDGDLQNQISDEDCSLVDWILVDSAAGGSGKGFNWTQFKLPPIKS KHGWLLAGGINPDNVCEAINTLRPHGVDVSSGICTSDGIQKDQSRIFSFMSAVRAIPY " mobile_element complement(771877..771967) /note="source:scaffold_4_CACTA_0511 14305 14393" /mobile_element_type="transposon:TIR/CACTA" gene complement(771904..775900) /locus_tag="TCM_042489" /note="dbxref CacaoGD:Thecc1EG042489" mRNA complement(join(771904..774958,775400..775598, 775703..775900)) /locus_tag="TCM_042489" /product="Zinc finger family protein" /inference="alignment:exonerate-protein:2:frave:gene20982" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041605t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06940.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3914t1" CDS complement(join(772876..774958,775400..775598, 775703..775799)) /locus_tag="TCM_042489" /note="paralog of Thecc1EG041605t1" /codon_start=1 /product="Zinc finger family protein" /protein_id="EOY17761.1" /db_xref="Phytozome:POPTR_0008s06940.1" /db_xref="TAIR:AT2G40140.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIU7" /translation="MADQYGVSNLMIWLPFAFAFHYKFQFHLFLLVKREGKKSHTFLP SSSPKPERPYLKSHQLAPLSPQTIALHTQTLLPRFQRTTFYLLFSLFSSSETAYRACW GMCSGSKSELVPSSIIMEGELHEPKAGAALCKCSVLLELAASDDLVAFKSEVEEKGLD LGEASFWYGRRIGSRKMGFEERTPLTIAAMFGSVDVLKYIIGSGKIDVNRACGTDGVT ALHCAIAGGANSSAKIVKLLLDASADANCVDANGNKPVDLIVPALKSLSTSRRKVIEL LLKGDNIVGVSDHVLNPEEEESEQIVLPQLLKEGPEKKEYPVDVSLPDINNGVYGTDE FRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKGD ACEYAHGVFESWLHPAQYRTRLCKDEIGCTRKVCFFAHKPEELRPVYASTGSAMPSPR SAAVNAVDMATLSPLALGSSSLPLPSTSTPPMSPLAASSSPKAGGLWQNKINLTPPVL QLPGSRLKTAFSARDLDLEMELLGLENHASQLQQQQLMDEISSLSSPSCWSKEYSRLG DLKPTNLDDAFGSLDPSLLSPLKGLSVNSATPSQLQSPTGLQIRQNLHQLRASYPTNV SSSPVRKPSAFGFDSAAAVAAAVMNSRSSAFAKRSQSFVDRGALTTRAGLTAPANSAT MMSSNISDWSSPDGKLDWGIQGDELNKLRKSASFGFRNNNPATTASIDMMPSNFDEPD VSWVNTLVKDVTPVGGGLQQRQQRYSGLGKGVRETLPPWVEQMYIEQEQMVA" gene 776761..787819 /locus_tag="TCM_042490" /note="dbxref CacaoGD:Thecc1EG042490" mRNA join(776761..777094,785168..785733,786033..786363, 787296..787819) /locus_tag="TCM_042490" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021686t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06930.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg583t1" mobile_element 781414..781502 /note="source:CACAO_M_E24018_F98_scaffold_4 1975 2063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 781423..781508 /note="source:CACAO_M_E14113_F106_scaffold_3 13791 13868" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(781436..781540) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3199 3282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(782945..783024) /note="source:MITE_Unknow_2_17 482 559" /mobile_element_type="transposon:TIR/MITE" CDS join(785234..785733,786033..786363,787296..787544) /locus_tag="TCM_042490" /note="paralog of Thecc1EG021686t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein" /protein_id="EOY17762.1" /db_xref="Phytozome:POPTR_0008s06930.1" /db_xref="TAIR:AT5G05600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFF6" /translation="MNTVQDWPEPIIRVQSLSESGLPIIPERYIKPAPDRPSFIDPED CDANIPIIDLTGLSGDEACNLPATTLDLISLACREWGFFQVVNHGVSPVLMDQARETW RSFFHLPMEIKQAYANSPKTYEGYGSRLGIEKGAILDWSDYYFLHYLPLTLKDYKKWP TSPDSCREVIDEYGKEVVKLCGRIMKVLSMNLGLREDHLQNEFGGENFGACLRVNFYP KCPQPDLALGLSSHSDPGGLTLLLPDHEVPGLQVRKDGKWITVKPAKHAFIVNIGDQI QVLSNANYKSVEHRVIVNSAMERVSLAFFYNPKSDIPIKPVEELVSADNPALYSPMTF DEYRLFIRLRGPKGKSQVESLKSPR" gene complement(790079..795282) /locus_tag="TCM_042491" /note="dbxref CacaoGD:Thecc1EG042491" mRNA complement(join(790079..790418,790733..790815, 790963..791293,791423..791543,793691..793913, 794602..794634,794725..795282)) /locus_tag="TCM_042491" /product="Alfin-like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06920.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021689t1" /inference="similar to AA sequence:ricco:28162.m000123" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3870t1" mRNA complement(join(790616..791293,791423..791543, 793691..793913,794602..794634,794725..795052)) /locus_tag="TCM_042491" /product="Alfin-like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06920.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021689t1" /inference="similar to AA sequence:ricco:28162.m000123" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15068t00001; alternateUTRof:Thecc1EG042491t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3870t1; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8067t2" CDS complement(join(791045..791293,791423..791543, 793691..793913,794602..794634,794725..794812)) /locus_tag="TCM_042491" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28162.m000123; paralog of Thecc1EG021689t1" /codon_start=1 /product="Alfin-like 1 isoform 1" /protein_id="EOY17763.1" /db_xref="TAIR:AT5G05610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S053" /translation="MASSSPCTVEEIFKDYSARRSALVRALTYDVDDFYSQCDPDKEN LCLYGHPNESWEVALPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDCWLLSI AFYFGARLNRNERKRLFSMINDLPTIFEVVTGRKPVKDKPTVESASKSRNSTKRSIDG QPRSNPKLADESYEDDEEEQGDTFCGSCGGGYNSDEFWIGCDMCERWYHGKCVKITPA KAETIKFYKCPSCQKKARQ" CDS complement(join(791045..791293,791423..791543, 793691..793913,794602..794634,794725..794812)) /locus_tag="TCM_042491" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28162.m000123; paralog of Thecc1EG021689t1" /codon_start=1 /product="Alfin-like 1 isoform 1" /protein_id="EOY17764.1" /db_xref="TAIR:AT5G05610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S053" /translation="MASSSPCTVEEIFKDYSARRSALVRALTYDVDDFYSQCDPDKEN LCLYGHPNESWEVALPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDCWLLSI AFYFGARLNRNERKRLFSMINDLPTIFEVVTGRKPVKDKPTVESASKSRNSTKRSIDG QPRSNPKLADESYEDDEEEQGDTFCGSCGGGYNSDEFWIGCDMCERWYHGKCVKITPA KAETIKFYKCPSCQKKARQ" gene complement(795391..801743) /locus_tag="TCM_042492" /note="dbxref CacaoGD:Thecc1EG042492" mRNA complement(join(795391..798205,798789..799032, 800168..801743)) /locus_tag="TCM_042492" /product="Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:28162.m000124" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041606t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06900.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7846t4" CDS complement(join(796286..798205,798789..799032, 800168..801417)) /locus_tag="TCM_042492" /note="paralog of Thecc1EG041606t1" /codon_start=1 /product="Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein, putative" /protein_id="EOY17765.1" /db_xref="Phytozome:POPTR_0008s06900.1" /db_xref="TAIR:AT2G40130.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BAL3" /translation="MPTPVCVARQCLTPEAAHALDEAVSVARRRGHAQTTSLHAVSAL LSLPSSALRDACARARNAAYSPRLQFKALELCLSVSLDRVPSSQLSSDPPVSNSLMAA IKRSQANQRRQPENFHLYREISQQNPSNISCVKVELQHLILSILDDPVVSRVFGEAGF RSSEIKLAIIRPLPNLLRYSRPRGPPIFLCNLENSDPGCETARVSGRRGFSFPFPGFA SFFEGEENCRRIGEVLARRRNPLLVGVSAYDALASFTESLEKKKDGFLVKEISGLNII CVKNFILKCMNEGFNKREVDLQFEEMGLVMEREMGGTGLVVNYGDLNILVSDKSEKNG DDDDYDDDDDKVDEDGVGYVVAQLTRLLQVYGGKVWLLGAAASYQTYLKFLSRFPSVE KDWDLQILPITSLRNPLAEPYPKSSLMESFVPFGGFFSTPSESKGSLSSSYQHVPRCH QCNERCEQEVIAISKGGFNVSVADQYQSTLPSWLQMTELGANKGLDVKTKDDGLLLNT KVAGLQKKWDNICQRLHHTHPVPESNTYQANPPFPSVLGFHIIQDKKENAHGHGGNIS NTLPNENNCINVNSSLPVNFQKMSTSQSDIPFSVVSMTKNGSFLSKLREKPSKEGYFE AIEPISPCSLSNSSVGDVSQASPTSVTSVTTDLGLGICSVSSCNKLKKPTNQNHKGLA QEFLGCLPANVDVINGSVSSHQAQSSSSSSPECGGQLDPSNFKKLFTAVTERVDWQDE AVSVICQTVANSRARNERCHGASRRGDIWLNFSGPDRCGKMKIAVALADIIYGSRENF ICIDLSSQDGVLHTQLLFNCQEVNYDLRFRGKTVVDYVAEELSKKPLSVVYLENVDKA DIQVQSSLSQAIRTGKFLDSHGREVSTNNAIFVTTSTLAKENQVVCHKTETSNYSEDK VLRAKGWPLQILIKHDDNTIGQDLMAPVTARKSVSKLGFLNKRKLIGSHETLEQHEIM EMAKRPNRTSSWNLDLNIPAEESEVQEADDGTVDNDSVAENPTPWLQDFFGQPVKNVV FKPFDFDALAERLLNDINQSFCKFIGSDCLLDIDSKVMEQLLAASYLSDETMVVTDWV GQVLSRGFAQVEERYNLNTHSVVKLVAYEGLPSEDKTLGVCLPPKIILN" mobile_element 804893..804983 /note="source:CACAO_MITE_S193_scaffold_8 122 220" /mobile_element_type="transposon:TIR/MITE" gene 812097..817617 /locus_tag="TCM_042493" /note="dbxref CacaoGD:Thecc1EG042493" mRNA join(812097..812558,813814..814693,814965..815292, 815703..816030,816241..816384,816534..817025) /locus_tag="TCM_042493" /product="Kinase superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032814001" /inference="similar to AA sequence:Phytozome:POPTR_0008s06890.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc616t10; inference alignment:Newbler:10:TSA:cgbaL_g09482t00001" mRNA join(812097..812558,813814..814693,814965..815292, 815703..816030,816241..816384,816626..817025) /locus_tag="TCM_042493" /product="Kinase superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032814001" /inference="similar to AA sequence:Phytozome:POPTR_0008s06890.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc616t3; alternateUTRof:Thecc1EG042493t4; inference alignment:Newbler:10:TSA:cgbaL_g09482t00001" mRNA join(812097..812558,813814..814689,814961..815292, 815703..816030,816241..816384,816534..817025) /locus_tag="TCM_042493" /product="Kinase superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032814001" /inference="similar to AA sequence:Phytozome:POPTR_0008s06890.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc616t9; alternateUTRof:Thecc1EG042493t4; inference alignment:Newbler:10:TSA:cgbaL_g09482t00001" mRNA join(812114..812558,813814..814693,814920..815244, 815477..815584,815752..816030,816241..816384, 816534..817617) /locus_tag="TCM_042493" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032814001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013275t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s06890.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09482t00001" mRNA join(812114..812558,813814..814693,814965..815244, 815477..815584,815752..816030,816241..816384, 816534..817617) /locus_tag="TCM_042493" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032814001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013275t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s06890.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b041018t1a2; inference alignment:Newbler:10:TSA:cgbaL_g09482t00001" mRNA join(812122..812558,813814..814693,814965..815244, 815477..815584,815752..816030,816241..816384, 816626..817010) /locus_tag="TCM_042493" /product="Kinase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032814001" /inference="similar to AA sequence:Phytozome:POPTR_0008s06890.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg603t1; inference alignment:Newbler:10:TSA:cgbaL_g09482t00001" CDS join(812270..812558,813814..814693,814965..815244, 815477..815584,815752..816030,816241..816384, 816626..816721) /locus_tag="TCM_042493" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein isoform 3" /protein_id="EOY17768.1" /db_xref="Phytozome:POPTR_0008s06890.1" /db_xref="TAIR:AT2G40120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHQ2" /translation="MEVSSEVEAVIQFLRKNGLREAEKALEEDMMEKNEEEEVGAFDF EKFLFPMPPPVRIPATIRRSEVDEKVKSSDGSDSDGDEFVSLRSSTSDVCSSDFVNPY GLHSASQADSDTSSDRLSQFGTARDYPDFDMQNDLYWYDDKDEGYLMTPCFAGSDFYG CPSEDKFVTTSETEKQQHNTLSVLDKSEGFQTEASIDYLDKPCLYNMACINGENEVQA MDYYHFDKCNRLEGDIEPELKNCAYGCSLPLCKCCGAPGLYDENPVNFSYLSSKETDL GDLQLKAAGDIDTDYNRASKHKSDKNVYSAKRGSNDWIDGFEDASDLVHKIAEKDLFP NTIDSYGVEDDEDNGELSEPKAAADGEDNTGDELLMYSNEEEYEVFNLRIVHRKNRTG FEENKDLPIVLNTVIAGRYYVTEYLGSAAFSKVVQAHDLLMGIDVCLKIIKNDKDFFD QSLDEIKLLKLVNKHDPGDEHHILRLYDYFYHQEHLFIVCELLRANLYEFQKFNQESG GVAYFNLSRLQVITRQCLEALDYLHGLGIIHCDLKPENILIKSYRRCEIKIIDLGSSC FQTDNLCLYVQSRSYRAPEVILGLPYDKKIDLWSLGCILAELSSGEVLFPNDAVVMIL ARMVGMLGPFDLEMLENGQETYKYFTKEYDLYHINETFASDEPSKAPNCEGGIATPMA FVLVLKQNS" CDS join(812270..812558,813814..814693,814920..815244, 815477..815584,815752..816030,816241..816384, 816534..816707) /locus_tag="TCM_042493" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG013275t2" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY17766.1" /db_xref="Phytozome:POPTR_0008s06890.1" /db_xref="TAIR:AT2G40120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHQ2" /translation="MEVSSEVEAVIQFLRKNGLREAEKALEEDMMEKNEEEEVGAFDF EKFLFPMPPPVRIPATIRRSEVDEKVKSSDGSDSDGDEFVSLRSSTSDVCSSDFVNPY GLHSASQADSDTSSDRLSQFGTARDYPDFDMQNDLYWYDDKDEGYLMTPCFAGSDFYG CPSEDKFVTTSETEKQQHNTLSVLDKSEGFQTEASIDYLDKPCLYNMACINGENEVQA MDYYHFDKCNRLEGDIEPELKNCAYGCSLPLCKCCGAPGLYDENPVNFSYLSSKETDL GDLQLKAAGDIDTDYNRASKHKSDKNVYSAKRGSNDWIDGFEDASDLVHKIAEKDLFP NTIDSYGVEDDEDNGELSEPKAAADGEDNTGDELLMYSNEEEYEVFNLRIVHRKNRLI CRNQYNSCYAIYRTGFEENKDLPIVLNTVIAGRYYVTEYLGSAAFSKVVQAHDLLMGI DVCLKIIKNDKDFFDQSLDEIKLLKLVNKHDPGDEHHILRLYDYFYHQEHLFIVCELL RANLYEFQKFNQESGGVAYFNLSRLQVITRQCLEALDYLHGLGIIHCDLKPENILIKS YRRCEIKIIDLGSSCFQTDNLCLYVQSRSYRAPEVILGLPYDKKIDLWSLGCILAELS SGEVLFPNDAVVMILARMVGMLGPFDLEMLENGQETYKYFTKEYDLYHINEETNQLEY IISEESLLEHHLQVSDVGFLDFVRHLLQMNPQRRPTAREALQHPWLLYSY" CDS join(812270..812558,813814..814693,814965..815244, 815477..815584,815752..816030,816241..816384, 816534..816707) /locus_tag="TCM_042493" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG013275t2" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY17767.1" /db_xref="Phytozome:POPTR_0008s06890.1" /db_xref="TAIR:AT2G40120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHQ2" /translation="MEVSSEVEAVIQFLRKNGLREAEKALEEDMMEKNEEEEVGAFDF EKFLFPMPPPVRIPATIRRSEVDEKVKSSDGSDSDGDEFVSLRSSTSDVCSSDFVNPY GLHSASQADSDTSSDRLSQFGTARDYPDFDMQNDLYWYDDKDEGYLMTPCFAGSDFYG CPSEDKFVTTSETEKQQHNTLSVLDKSEGFQTEASIDYLDKPCLYNMACINGENEVQA MDYYHFDKCNRLEGDIEPELKNCAYGCSLPLCKCCGAPGLYDENPVNFSYLSSKETDL GDLQLKAAGDIDTDYNRASKHKSDKNVYSAKRGSNDWIDGFEDASDLVHKIAEKDLFP NTIDSYGVEDDEDNGELSEPKAAADGEDNTGDELLMYSNEEEYEVFNLRIVHRKNRTG FEENKDLPIVLNTVIAGRYYVTEYLGSAAFSKVVQAHDLLMGIDVCLKIIKNDKDFFD QSLDEIKLLKLVNKHDPGDEHHILRLYDYFYHQEHLFIVCELLRANLYEFQKFNQESG GVAYFNLSRLQVITRQCLEALDYLHGLGIIHCDLKPENILIKSYRRCEIKIIDLGSSC FQTDNLCLYVQSRSYRAPEVILGLPYDKKIDLWSLGCILAELSSGEVLFPNDAVVMIL ARMVGMLGPFDLEMLENGQETYKYFTKEYDLYHINEETNQLEYIISEESLLEHHLQVS DVGFLDFVRHLLQMNPQRRPTAREALQHPWLLYSY" CDS join(812270..812558,813814..814693,814965..815289) /locus_tag="TCM_042493" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein isoform 4" /protein_id="EOY17769.1" /db_xref="Phytozome:POPTR_0008s06890.1" /db_xref="TAIR:AT2G40120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHQ2" /translation="MEVSSEVEAVIQFLRKNGLREAEKALEEDMMEKNEEEEVGAFDF EKFLFPMPPPVRIPATIRRSEVDEKVKSSDGSDSDGDEFVSLRSSTSDVCSSDFVNPY GLHSASQADSDTSSDRLSQFGTARDYPDFDMQNDLYWYDDKDEGYLMTPCFAGSDFYG CPSEDKFVTTSETEKQQHNTLSVLDKSEGFQTEASIDYLDKPCLYNMACINGENEVQA MDYYHFDKCNRLEGDIEPELKNCAYGCSLPLCKCCGAPGLYDENPVNFSYLSSKETDL GDLQLKAAGDIDTDYNRASKHKSDKNVYSAKRGSNDWIDGFEDASDLVHKIAEKDLFP NTIDSYGVEDDEDNGELSEPKAAADGEDNTGDELLMYSNEEEYEVFNLRIVHRKNRTG FEENKDLPIVLNTVIAGRYYVTEYLGSAAFSKVVQAHDLLMGIDVCLKIIKNDKDFFD QSLDEIKLLKLVNKHDPGDEHHILRLYDYFYHQVCLKSKLVILSTPL" CDS join(812270..812558,813814..814693,814965..815289) /locus_tag="TCM_042493" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein isoform 4" /protein_id="EOY17770.1" /db_xref="Phytozome:POPTR_0008s06890.1" /db_xref="TAIR:AT2G40120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHQ2" /translation="MEVSSEVEAVIQFLRKNGLREAEKALEEDMMEKNEEEEVGAFDF EKFLFPMPPPVRIPATIRRSEVDEKVKSSDGSDSDGDEFVSLRSSTSDVCSSDFVNPY GLHSASQADSDTSSDRLSQFGTARDYPDFDMQNDLYWYDDKDEGYLMTPCFAGSDFYG CPSEDKFVTTSETEKQQHNTLSVLDKSEGFQTEASIDYLDKPCLYNMACINGENEVQA MDYYHFDKCNRLEGDIEPELKNCAYGCSLPLCKCCGAPGLYDENPVNFSYLSSKETDL GDLQLKAAGDIDTDYNRASKHKSDKNVYSAKRGSNDWIDGFEDASDLVHKIAEKDLFP NTIDSYGVEDDEDNGELSEPKAAADGEDNTGDELLMYSNEEEYEVFNLRIVHRKNRTG FEENKDLPIVLNTVIAGRYYVTEYLGSAAFSKVVQAHDLLMGIDVCLKIIKNDKDFFD QSLDEIKLLKLVNKHDPGDEHHILRLYDYFYHQVCLKSKLVILSTPL" CDS join(812270..812558,813814..814689,814961..815289) /locus_tag="TCM_042493" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein isoform 4" /protein_id="EOY17771.1" /db_xref="Phytozome:POPTR_0008s06890.1" /db_xref="TAIR:AT2G40120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHQ2" /translation="MEVSSEVEAVIQFLRKNGLREAEKALEEDMMEKNEEEEVGAFDF EKFLFPMPPPVRIPATIRRSEVDEKVKSSDGSDSDGDEFVSLRSSTSDVCSSDFVNPY GLHSASQADSDTSSDRLSQFGTARDYPDFDMQNDLYWYDDKDEGYLMTPCFAGSDFYG CPSEDKFVTTSETEKQQHNTLSVLDKSEGFQTEASIDYLDKPCLYNMACINGENEVQA MDYYHFDKCNRLEGDIEPELKNCAYGCSLPLCKCCGAPGLYDENPVNFSYLSSKETDL GDLQLKAAGDIDTDYNRASKHKSDKNVYSAKRGSNDWIDGFEDASDLVHKIAEKDLFP NTIDSYGVEDDEDNGELSEPKAAADGEDNTGDELLMYSNEEEYEVFNLRIVHRKNRTG FEENKDLPIVLNTVIAGRYYVTEYLGSAAFSKVVQAHDLLMGIDVCLKIIKNDKDFFD QSLDEIKLLKLVNKHDPGDEHHILRLYDYFYHQVCLKSKLVILSTPL" gene 818905..822374 /locus_tag="TCM_042494" /note="dbxref CacaoGD:Thecc1EG042494" mRNA join(818905..819571,820372..820500,820590..820710, 820838..>820915) /locus_tag="TCM_042494" /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g42450.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19580.2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8269t2; inference alignment:Newbler:10:TSA:cgbaP2_g06999t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc403t2_C2" mRNA join(819114..819571,820372..820500,820590..820710, 820838..820919,821657..821810,821910..822374) /locus_tag="TCM_042494" /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g42450.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19580.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06999t00001; inference alignment:Newbler:10:TSA:cgbaP2_g06999t00001" CDS join(819260..819571,820372..820500,820590..820710, 820838..820919,821657..821810,821910..822044) /locus_tag="TCM_042494" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein isoform 1" /protein_id="EOY17772.1" /db_xref="Phytozome:POPTR_0010s19580.1" /db_xref="TAIR:AT3G55960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LY49" /translation="MAELTQAEVYSPRSMQVWRALLNWLAFFFQIFAQIIRAVGQYPL LSSSSSSSSSSSSTTSSSPHRFKPLPVDDSTEIESPATVEIAAVLDSSVLADEDSVEK LTVVLDLDETLVCAYETSSLPPALRNQATDAGLKWFELECVSSDKEFEGKPKINYVTV FERPGLQEFLNQLSEFAELVLFTAGLEGYARPLVDRIDAENRFSLRLYRPSTISTEYR EHVKDLSCLSKDLCRTVIVDNNPFSFLLQPLNGIPCIPFSAGQPHDTQLLDVLLPLLK HLSQQKDVRSVLYERFRMPEWFQKQGIPASGWSV" CDS join(819260..819571,820372..820500,820590..820710, 820838..>820914) /locus_tag="TCM_042494" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein isoform 2" /protein_id="EOY17773.1" /db_xref="Phytozome:POPTR_0010s19580.2" /db_xref="TAIR:AT3G55960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHQ1" /translation="MAELTQAEVYSPRSMQVWRALLNWLAFFFQIFAQIIRAVGQYPL LSSSSSSSSSSSSTTSSSPHRFKPLPVDDSTEIESPATVEIAAVLDSSVLADEDSVEK LTVVLDLDETLVCAYETSSLPPALRNQATDAGLKWFELECVSSDKEFEGKPKINYVTV FERPGLQEFLNQLSEFAELVLFTAGLEGYARPLVDRIDAENRFSLRLYRPSTI" mobile_element 826163..826217 /note="source:scaffold_6_CACTA_0707 5044 5096" /mobile_element_type="transposon:TIR/CACTA" gene 826717..831741 /locus_tag="TCM_042495" /note="dbxref CacaoGD:Thecc1EG042495" mRNA join(826717..826753,828291..831741) /locus_tag="TCM_042495" /product="CRINKLY4 related 3, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041608t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19590.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc264t1" CDS 828487..830907 /locus_tag="TCM_042495" /note="paralog of Thecc1EG041608t1" /codon_start=1 /product="CRINKLY4 related 3, putative" /protein_id="EOY17774.1" /db_xref="Phytozome:POPTR_0010s19590.1" /db_xref="TAIR:AT3G55950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LY50" /translation="MTKLAFALLVAVGFLAAISFPRLTHALGSGSTLAVAYGTVTVCA IVAAEPNQRIICYRPGDTSSSAVVPILPNVSYSTVVGGETDVCALRSGGYSLLCWKTD NLTFPVKRLYINYTVTLQSLSIGEERICATTTNTSTPVFCWRTDGSNRNNSEELPNGN YSMGKITSGVEFSCGIVLSENNRVTCWGDNPVGKQIERQFGNMSMSNIEAGFSHVCGV SSAGDLVCKGDNSTGQLNVPSNKGLNFASGLALGEGFSCAIRRSSGTVVCWGSMGETA VGGIGFESIVSGSNFACGLTTKNLSVVCWGPGWPGTNGSNSNSTVNELPLGADILPWP CVQSSCNECGLYPDSSRLCFGSGNICKPSPCFNFTAPPPPLPAAPPLGTTRSSPSKEL RRGLLAFAIVGSVGCFVGICSIVYCLWTGVCFGKKKVHNSVQPTITRAGSNGGPGSNN SPPSRSSTIRRQSSRAMRRQRSGTSSKHADRAEEFSLAELAAATNDFSFENKIGAGSF GVVYRGKLLDGREVAIKRGETGSKAKKFQEKESAFESELAFLSRLHHKHLVRLVGYCE EKDERLLVYEYMKNGALYDHLHDKNNVEKSSSLLNSWKMRIKIALDAARGIEYLHNYA VPPIIHRDIKSSNILLDVSWTARVSDFGLSLMGPESDRDYRPMKAAGTVGYIDPEYYG LNVLTAKSDVYGLGVVMLELLTGKRAIFKNDENGGTPVSLVDFAVPAIMAGELVKVLD TRVGPPELNEAEAVELMAYTAMHCVNLEGKERPTIGDIVSNLERAVNVCDGSHGSISS GTFSIVSE" gene complement(832490..837990) /locus_tag="TCM_042496" /note="dbxref CacaoGD:Thecc1EG042496" mRNA complement(join(832490..833133,833219..833308, 833392..833598,833750..833831,834000..834190, 834386..834559,834649..834811,834917..835002, 835289..835381,835606..835672,835969..836024, 836108..836221,836298..837990)) /locus_tag="TCM_042496" /product="Sequence-specific DNA binding transcription factor isoform 1" /inference="alignment:exonerate- protein:2:ricco:28162.m000128" /inference="similar to AA sequence:ricco:28162.m000128" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg643t2" CDS complement(join(832975..833133,833219..833308, 833392..833598,833750..833831,834000..834190, 834386..834559,834649..834811,834917..835002, 835289..835381,835606..835672,835969..836024, 836108..836221,836298..837455)) /locus_tag="TCM_042496" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28162.m000128" /codon_start=1 /product="Sequence-specific DNA binding transcription factor isoform 1" /protein_id="EOY17775.1" /db_xref="TAIR:AT5G05660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFK8" /translation="MSATANYHPPPPSQPPLSDSDSDSDTDNFHIGSDLSNSIFKAYL EFSSSSSSSSSSSITAVDLSKIQSFLTSSSSGALSCLICLERIRPSDPTWSCSSLCFA LFHLFCIQSWARQSSELSAARASARLPITAEVAAKQATWNCPKCRFSYSKSQIPKSYL CFCGKLQDPPSDNPWILPHSCGEICNRQLPNNCGHFCLLLCHPGPCPSCPKSIKTRCF CGSVEDFRRCGFKNFSCNQPCNKLLDCNKHRCSEICHPGTCPPCRARDIYCCRCGQKE EEKDCCDRDFRCENECKKLLNCEKHLCERGCHAGDCGECPLQGKQSCPCGKRVYEGMP CDVAAPVCGATCNKLLNCGFHRCPERCHKGPCVETCRIMVKKSCRCGGLKKEVPCYQD LSCERKCLRTRDCGRHACKRRCCDGNCPPCPEVCNKRLRCKNHKCPAPCHRGACAPCP VIVTISCACGETHFEVPCGTEMDQKPPKCRKLCMITPLCRHASNLKPHRCHYGACPQC RLLCEEEYPCGHKCNLRCHGPRPPPNPEFMLKPKKKKLNHQNECTPGTPCPPCPELVW KPCVGQHIGAERMMVCSDRARFSCDNLCGNLLPCGNHYCTKTCHSLEIQSSSSGYHKR SESCEECNLPCQKERMPKCSHPCPLPCHPGECPPCKVLVKRSCHCGAMVHAFECIYYN SLSEKDQVAVRSCGGPCHRKLPNCTHLCPETCHVGQCPAPDKCSKRVTVRCKCQTLKK EWVCQDVQAAYRDTGRDPNDISKNQFGLGLLPCNSNCKSKKQEVDSSLQLRNPKVLEK KDPEIEKHGPKRRKRRDRIQEDKQVSRLQKFVATMKRLLLFIIIVVALMAVTYYGYKG LLRLSDWMNDIEAQRERRRHPRI" mRNA complement(join(833107..833598,833750..833831, 834000..834190,834386..834559,834649..834811, 834917..835002,835289..835381,835606..835672, 835969..836024,836108..836221,836298..>837432)) /locus_tag="TCM_042496" /product="Sequence-specific DNA binding transcription factor isoform 2" /inference="alignment:exonerate- protein:2:ricco:28162.m000128" /inference="similar to AA sequence:ricco:28162.m000128" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7856t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg643t2; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc486t9" mRNA complement(join(833107..833308,833392..833831, 834000..834190,834386..834559,834649..834811, 834917..835002,835289..835381,835606..835672, 835969..836024,836108..836221,836298..>837432)) /locus_tag="TCM_042496" /product="Sequence-specific DNA binding transcription factor isoform 3" /inference="alignment:exonerate- protein:2:ricco:28162.m000128" /inference="similar to AA sequence:ricco:28162.m000128" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7856t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg643t2; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc486t9" CDS complement(join(833311..833598,833750..833831, 834000..834190,834386..834559,834649..834811, 834917..835002,835289..835381,835606..835672, 835969..836024,836108..836221,836298..>837431)) /locus_tag="TCM_042496" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28162.m000128" /codon_start=1 /product="Sequence-specific DNA binding transcription factor isoform 2" /protein_id="EOY17776.1" /db_xref="TAIR:AT5G05660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFK8" /translation="PPPPSQPPLSDSDSDSDTDNFHIGSDLSNSIFKAYLEFSSSSSS SSSSSITAVDLSKIQSFLTSSSSGALSCLICLERIRPSDPTWSCSSLCFALFHLFCIQ SWARQSSELSAARASARLPITAEVAAKQATWNCPKCRFSYSKSQIPKSYLCFCGKLQD PPSDNPWILPHSCGEICNRQLPNNCGHFCLLLCHPGPCPSCPKSIKTRCFCGSVEDFR RCGFKNFSCNQPCNKLLDCNKHRCSEICHPGTCPPCRARDIYCCRCGQKEEEKDCCDR DFRCENECKKLLNCEKHLCERGCHAGDCGECPLQGKQSCPCGKRVYEGMPCDVAAPVC GATCNKLLNCGFHRCPERCHKGPCVETCRIMVKKSCRCGGLKKEVPCYQDLSCERKCL RTRDCGRHACKRRCCDGNCPPCPEVCNKRLRCKNHKCPAPCHRGACAPCPVIVTISCA CGETHFEVPCGTEMDQKPPKCRKLCMITPLCRHASNLKPHRCHYGACPQCRLLCEEEY PCGHKCNLRCHGPRPPPNPEFMLKPKKKKLNHQNECTPGTPCPPCPELVWKPCVGQHI GAERMMVCSDRARFSCDNLCGNLLPCGNHYCTKTCHSLEIQSSSSGYHKRSESCEECN LPCQKERMPKCSHPCPLPCHPGECPPCKVLVKRSCHCGAMVHAFECIYYNSLSEKDQV AVRSCGGPCHRKLPNCTHLCPETCHVGQCPAPDKCSKRVTVRCKCQTLKKEWVCQDVQ AAYRDTGRDPNDISKNQFGLGLLPCNSNCKSKKQEVDSSLQLRNPKVLEVRSFKLRLH CLTSVSSLICLYHCILY" CDS complement(join(833711..833831,834000..834190, 834386..834559,834649..834811,834917..835002, 835289..835381,835606..835672,835969..836024, 836108..836221,836298..>837431)) /locus_tag="TCM_042496" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28162.m000128" /codon_start=1 /product="Sequence-specific DNA binding transcription factor isoform 3" /protein_id="EOY17777.1" /db_xref="TAIR:AT5G05660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFK8" /translation="PPPPSQPPLSDSDSDSDTDNFHIGSDLSNSIFKAYLEFSSSSSS SSSSSITAVDLSKIQSFLTSSSSGALSCLICLERIRPSDPTWSCSSLCFALFHLFCIQ SWARQSSELSAARASARLPITAEVAAKQATWNCPKCRFSYSKSQIPKSYLCFCGKLQD PPSDNPWILPHSCGEICNRQLPNNCGHFCLLLCHPGPCPSCPKSIKTRCFCGSVEDFR RCGFKNFSCNQPCNKLLDCNKHRCSEICHPGTCPPCRARDIYCCRCGQKEEEKDCCDR DFRCENECKKLLNCEKHLCERGCHAGDCGECPLQGKQSCPCGKRVYEGMPCDVAAPVC GATCNKLLNCGFHRCPERCHKGPCVETCRIMVKKSCRCGGLKKEVPCYQDLSCERKCL RTRDCGRHACKRRCCDGNCPPCPEVCNKRLRCKNHKCPAPCHRGACAPCPVIVTISCA CGETHFEVPCGTEMDQKPPKCRKLCMITPLCRHASNLKPHRCHYGACPQCRLLCEEEY PCGHKCNLRCHGPRPPPNPEFMLKPKKKKLNHQNECTPGTPCPPCPELVWKPCVGQHI GAERMMVCSDRARFSCDNLCGNLLPCGNHYCTKTCHSLEIQSSSSGYHKRSESCEECN LPCQKERMPKCSHPCPLPCHPGECPPCKVLVKRSCHCGAMVHAFECIYYNSLSEKDQV AVRSCGGPCHRKLPNCTHLCPETCHVGQCPAPDKCSKRVIILVNSIYLFI" mobile_element complement(835384..835541) /note="source:CACAO_PIF_E144_scaffold_10 3315 3474" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(838420..843339) /locus_tag="TCM_042497" /note="dbxref CacaoGD:Thecc1EG042497" mRNA complement(join(838420..839244,839350..839436, 839567..839719,840129..840246,840596..840816, 840917..841162,841239..841374,841884..842080, 842791..843339)) /locus_tag="TCM_042497" /product="Phospholipase C 2" /inference="alignment:exonerate- protein:2:ricco:28833.m000159" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041617t1" /inference="similar to AA sequence:ricco:28833.m000159" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03650t00001" CDS complement(join(838939..839244,839350..839436, 839567..839719,840129..840246,840596..840816, 840917..841162,841239..841374,841884..842080, 842791..843087)) /locus_tag="TCM_042497" /note="dbxref ricco:28833.m000159; paralog of Thecc1EG041617t1" /codon_start=1 /product="Phospholipase C 2" /protein_id="EOY17778.1" /db_xref="TAIR:AT3G08510.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKS4" /translation="MSKQTYRVCFCFRRRFRLTVSEAPEGIKKLFEQYSENGIMSLDR LQRFLVEVQKEEKATIEDAQKIIDSVKHFHRKGLNLEAFFKYLFGDINPPLASLGVHH DMSAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIINALKRGVRVIELDIWPNSAKDNVD VLHGRTLTTPVELIQCLKSIREHAFVASEYPVVITLEDHLAPDLQAKVAEMVTQTFGD VLFSPGPECLKEFPSPESLKKRIIISTKPPKEYLEAKEAKDKENDAEKGKAASDEEAW GKEVPDLKGSHVADDKNDLDEEDEEDPEDGDKSQHNLAPEYKRLIAIHAGKPKGGLDE WLRVDPDKVRRLSMSEQELEKAALTHGKQIVRFTQRNILRVYPKGIRVDSSNYNPLIG WMHGAQMVAFNMQGYGRSLWLMHGMFKANGGCGYVKKPDFLLKSGPHDDVFDPSVRLP VKTVLKVTVYMGEGWYHDFHHTHFDAYSPPDFYARVGIAGVPADNVMKKTKTLEDNWV PSWNEEFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPVSELRSGIRAVPLNSRK GDKYNSVKLLMRFELSDIRV" gene complement(843977..848196) /locus_tag="TCM_042498" /note="dbxref CacaoGD:Thecc1EG042498" mRNA complement(join(843977..844908,845322..845408, 845486..845638,845782..845899,845990..846210, 846288..846524,846610..846745,847220..847416, 847645..848196)) /locus_tag="TCM_042498" /product="Phosphoinositide-specific phospholipase C family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041617t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06830.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg615t2" CDS complement(join(844615..844908,845322..845408, 845486..845638,845782..845899,845990..846210, 846288..846524,846610..846745,847220..847416, 847645..847995)) /locus_tag="TCM_042498" /note="paralog of Thecc1EG041617t1" /codon_start=1 /product="Phosphoinositide-specific phospholipase C family protein" /protein_id="EOY17779.1" /db_xref="Phytozome:POPTR_0008s06830.1" /db_xref="TAIR:AT2G40116.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GV43" /translation="MNENVDSGSYNYKMFNFFNRKFKINEVEPPADVKKAFAEFTDGG AAAALNMTAEQLKRFLVVHQGEVDRTLEDAERIIQQVVSRRHHVTKYASHSLNLDDFF HFLFFDDLNGPIKTQVHHDMTAPLSHYFIYTGHNSYLTGNQLSSDCSEVPIIKALQRG VRVIELDLWPSSSKDEVLVLHGRTLTSPVSLIKCLISIKEYAFATSPYPVIITLEDHL TPELQAKVAEMVIQTFGTMLYYPESDCLSEFPSPESLKHRIIISTKPPKEYLESRSKD NSSPGEMGFSEEESSSKEMQDNKPESEADDRSDSDHDDEDFNECTGKSGQTGVSAYKR LITIHAGKPKGALKDALKVAANKVRRLSMSEQELEKAAASHGSDVVSFTQKNILRIYP KGTRFTSSNYKPTIGWMHGAQMIAFNMQGYGKSLWLMHGMFRANGGCGYVRKPDFLMQ KGSHDVVLDPKITLPVQKMLKVKIYMGDGWRLDFSHTHFDTYSPPDFYTKVYIVGVPA DEAKRKTRIIGDDWSPVWDEEFTYPLTVPDLALLRIEVREYDMSEKDDFGGQTCLPVS DLRPGIRSVPLHDKKGKKLPNARLLMKFEFV" mobile_element 848182..848241 /note="source:CACAO_M_E49559_F88_scaffold_7 7668 7717" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 848193..848247 /note="source:CACAO_M_E33213_F12_scaffold_4 9260 9315" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(848581..852199) /locus_tag="TCM_042499" /note="dbxref CacaoGD:Thecc1EG042499" mRNA complement(join(848581..849695,852019..852199)) /locus_tag="TCM_042499" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019370t1" /note="quality class is medium-utrpoor, express is none, homology is paralog strong, intron is none, protein is utrpoor_complete" CDS complement(849004..849279) /locus_tag="TCM_042499" /note="paralog of Thecc1EG019370t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17780.1" /translation="MREVMVLFAASSWAKSGGINIESDSKNAVSWISKPINAPWRLGQ LIHQITALKGKVLDRQIHYIPRSGDEVADNLAKTGIERPNDLIRIHP" gene 849499..850570 /locus_tag="TCM_042500" /note="dbxref CacaoGD:Thecc1EG042500" mRNA join(849499..849927,850312..850570) /locus_tag="TCM_042500" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042450t1" /inference="similar to AA sequence:ricco:29729.m002275" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 849554..849907 /locus_tag="TCM_042500" /note="dbxref ricco:29729.m002275; paralog of Thecc1EG042450t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17781.1" /translation="MNRTTKRSFVLGMIKPELGGMLAGNRTGSEGIQSGRRGCRSPEC YTKPDRTKKDANIMYLRFQEALQEEKEKLHVKLQRSRTIDDSKQCRVIEYLIDVTENV VNVLPGKKVHKLLVN" mobile_element complement(852172..852247) /note="source:scaffold_8_CACTA_0852 403 476" /mobile_element_type="transposon:TIR/CACTA" gene complement(852469..854249) /locus_tag="TCM_042501" /note="dbxref CacaoGD:Thecc1EG042501" mRNA complement(join(852469..853124,853236..853458, 853787..854249)) /locus_tag="TCM_042501" /product="Phosphoinositide-specific phospholipase C P12" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042498t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19620.1" /note="quality class is medium, express is none, homology is paralog strong, intron is none, protein is utrpoor_complete" CDS complement(join(853118..853124,853236..853458, 853787..853880)) /locus_tag="TCM_042501" /note="paralog of Thecc1EG042498t1" /codon_start=1 /product="Phosphoinositide-specific phospholipase C P12" /protein_id="EOY17782.1" /db_xref="Phytozome:POPTR_0010s19620.1" /db_xref="TAIR:AT2G40116.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43442" /translation="MTAEQLKRFLMVHQGEVDRNLELRCRAYHSTGLTDDMLFQVHHH MTAPLSHYFIYTGHNSYLTGNQLSCDCSEVPIINALQRGVRVIELDLWPRSTKDEVLV LHGRL" gene 854795..857274 /locus_tag="TCM_042502" /note="dbxref CacaoGD:Thecc1EG042502" mRNA join(854795..854953,855185..855849,856298..856447, 856585..856740,856891..857274) /locus_tag="TCM_042502" /product="Calcium-dependent protein kinase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007580t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s21710.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(855189..855849,856298..856447,856585..856740, 856891..856994) /locus_tag="TCM_042502" /note="paralog of Thecc1EG007580t2" /codon_start=1 /product="Calcium-dependent protein kinase family protein, putative" /protein_id="EOY17783.1" /db_xref="Phytozome:POPTR_0004s21710.1" /db_xref="TAIR:AT2G17290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B6U7V0" /translation="MGNTCIGSLLGDKFDDQIQDCSSNSNCNFPQILVYPDLVFPSRK ETIGDKACTILDHETPNVHKLYTFGRELGRGSTGTTYSCTEIATGIRYACKSIPKSNL KFDQQVEDVRREIKVLQHLSGQKHVVTIKGAYEDSLCIHIVMELCCGGELYDLIKERA YFSEREAAELIKIVVGVVETCHSLGVMHRDLKPENFVLVNKDDVFSLKAVDFGFSVFF KPGQVFSDSAGSLYYAAPEILLNENYGPEADIWSAGVILFVLLSGGMLPFEAETEKEM LDMVLEGQVLDFESEPWPQRSDSAKDLVRKMLCSQPSERLTAKEVRSHPWICHNGFLD EELDSALLPDEEKFPAMKLHRD" gene 857705..859667 /locus_tag="TCM_042503" /note="dbxref CacaoGD:Thecc1EG042503" mRNA join(857705..858432,858535..858678,858838..859667) /locus_tag="TCM_042503" /product="Calcium-dependent protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s16970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007580t2" /inference="similar to AA sequence:Phytozome:POPTR_0009s16970.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1526t1" CDS join(857787..858432,858535..858678,858838..859043) /locus_tag="TCM_042503" /note="paralog of Thecc1EG007580t2" /codon_start=1 /product="Calcium-dependent protein kinase family protein" /protein_id="EOY17784.1" /db_xref="Phytozome:POPTR_0009s16970.1" /db_xref="TAIR:AT2G17290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MD17" /translation="MGNTCIRSFRSEFYQGYDMKKEKLSSSKLNKNPVKISYNIDSLQ AHHILGHKTPNIHDLYMFGRKLGQGQSGATFVCTEIATGIKYACKSILKANLISKDAA EDVRREVQIMQHLAGQKNIVEIKGAYEDPLYVHIVMELCSGGDLFDRIKKRSQCYSER EAAKLIKIIVGVIEACNALGVMHRDLKPENFMLVNKDDDFSLKAIDFGYSIFFEPGQV FTDRVGSPYYVAPEVINKHYGPEADVWSAGVILYILLSGVPPFWAETTQAQFDATLKG HIDFESEPWPKISDSAKDLIRKMLCLRPSERLTAGAVLSKYELSIDSAAECKQII" gene 859714..862855 /locus_tag="TCM_042504" /note="dbxref CacaoGD:Thecc1EG042504" mRNA join(859714..860152,860240..860284,860385..860457, 861031..861078,861184..861207,861724..861906, 862069..862144,862454..862855) /locus_tag="TCM_042504" /product="Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041621t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19630.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11481t00001" CDS join(860075..860152,860240..860284,860385..860457, 861031..861078,861184..861207,861724..861906, 862069..862144,862454..862592) /locus_tag="TCM_042504" /note="paralog of Thecc1EG041621t1" /codon_start=1 /product="Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein" /protein_id="EOY17785.1" /db_xref="Phytozome:POPTR_0010s19630.1" /db_xref="TAIR:AT3G55920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SP02" /translation="MATKTRVVSVAVLWILVLFGTLALIQNRLSDAGISEPKLNQVVE DDSEEVTHKVYFDVQIDGKSAGRIVMGLFGKTVPKTAENFRALCTGEKGTGNSGKRLH YKGSTFHRIIPSFMIQGGDFTRGDGRGGESIYGEKFADENFKLKHDGPGLLSMANGGP DTNGSQFFITTVTTSWLDGRHVVFGKVLAGMDVVYKIEGEGRHSGVPKSKVVIVDSGE MPI" gene complement(863694..864108) /locus_tag="TCM_042505" /note="dbxref CacaoGD:Thecc1EG042505" mRNA complement(863694..864108) /locus_tag="TCM_042505" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06820.1" /inference="similar to AA sequence:ricco:28833.m000156" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc207t10_C2" CDS complement(863722..864066) /locus_tag="TCM_042505" /note="dbxref ricco:28833.m000156" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17786.1" /db_xref="TAIR:AT2G40080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T5X8" /translation="MANKPTSNRKLKHHRDQDLEEVEGDPEVWATFDKSFKQVQSVLD RNRALIQQVNQNHQSKIPDNMVKNVALIQEINGNISKVVSLYSDLSSNFSTVFHNRND DHKNGAGGGRID" gene 866844..869895 /locus_tag="TCM_042506" /note="dbxref CacaoGD:Thecc1EG042506" mRNA join(866844..867185,867273..867341,867457..867557, 868116..868208,869029..869168,869250..869895) /locus_tag="TCM_042506" /product="DNA replication complex GINS protein psf3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06810.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19650.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15969t00001" CDS join(866985..867185,867273..867341,867457..867557, 868116..868208,869029..869168,869250..869359) /locus_tag="TCM_042506" /codon_start=1 /product="DNA replication complex GINS protein psf3" /protein_id="EOY17787.1" /db_xref="Phytozome:POPTR_0010s19650.1" /db_xref="TAIR:AT3G55490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NNH6" /translation="MRSSGQKPITIPAFPFNFPSQITIPKFTIDKFFLLFWFSEPKEK LRDKLRTKMANYYNIDDILTEEEFVPVVFHKAANGVIIDPSSETNSVEQGAKVELPLW LAQELYLRQAVSISVPACFNQKTRLEIQADAACVDLKSRSPFFYEFGCKIAPLVGDKT VEVLLLSAFKIRYKEILTKAYTVAYTAASKFLTLLTKEETNLYEAAQSSMAAFKKWRM GGPRLQRASVLGRKRKPIE" gene 872624..875251 /locus_tag="TCM_042507" /note="dbxref CacaoGD:Thecc1EG042507" mRNA join(872624..872712,872800..872997,874062..875251) /locus_tag="TCM_042507" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30152.m002388" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042509t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(872684..872712,872800..872997,874062..874548) /locus_tag="TCM_042507" /note="paralog of Thecc1EG042509t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17788.1" /translation="MSPAGSPPLSNSSSSDNYMFAICVFLVTVFLALVFLVGHDACGK LHAISSVSNFLNQLLGRGGHHNQERFRCLTSSNSSTASNPKHAIFGFLIAVLLALLPL KFGSMNPPVAPFETYSAILSTFLIITVLYAVAWAIETKLGTNNNSYRLLISNISFLLG GLATVLLVLILVPAVGYFALVIWTLFLVKFIYEACQKLHQLYGAISLASNLWNELRGR SRGGHGGDYQNEGTIILPV" gene complement(875802..876992) /locus_tag="TCM_042508" /note="dbxref CacaoGD:Thecc1EG042508" mRNA complement(875802..876992) /locus_tag="TCM_042508" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s02050.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042510t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1365t1" CDS complement(876172..876612) /locus_tag="TCM_042508" /note="paralog of Thecc1EG042510t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17789.1" /translation="MEMLFAKTLTETDVQKRLSIPFTCLKDFEFHGSNSAQLRVEDQN GSIWSFALSTRKNGHPKPIFSGGWRQFVRCGHLCEGDRVEFYKDTKENGFYRIQVQRC IKLFGKKCWVALPLDQRRVNFEEGTEAAAAAEAEAKEEESKKNT" gene 878524..880918 /locus_tag="TCM_042509" /note="dbxref CacaoGD:Thecc1EG042509" mRNA join(878524..878757,879494..879939,880712..880918) /locus_tag="TCM_042509" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30152.m002388.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042507t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(878708..878757,879494..879939,880712..880719) /locus_tag="TCM_042509" /note="paralog of Thecc1EG042507t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17790.1" /translation="MHNRCRNVRVRKLNRQTNSSTASNPKHAIFGFLIAVLLALLPLK FGSMNPSAAPFETYSAILSTFLIIMVLYAVAWAIETKLGTNNSSYRLLMRNISFLLGG LATVLLVLILVPGVGYFALVIWTLFLVKFIYEACQKLHQLYGAISLASNLWNELRGRG RGGHGGH" mobile_element complement(878717..879307) /note="source:CACAO_M_E69938_F9_scaffold_9 5750 6357" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(881211..884249) /locus_tag="TCM_042510" /note="dbxref CacaoGD:Thecc1EG042510" mRNA complement(join(881211..882031,882611..882687, 883218..883520,883665..884249)) /locus_tag="TCM_042510" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09620.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042514t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02040.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1365t1" CDS complement(join(881565..882031,882611..882687, 883218..883520,883665..884044)) /locus_tag="TCM_042510" /note="paralog of Thecc1EG042514t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17791.1" /db_xref="Phytozome:POPTR_0012s02040.1" /translation="MNLKFLPVNIPSPFETHCDIMTMFIITILVYGTNFHTSFSHEII SKYISLLSGSLAPALLALILFPGYLGRLILLVWTIYFVKLTYDAWRKLYQLYNTISSV SDFLNQLLGRRGLHNEESIPYITSSSISTATHQKHAILGLLIAVFLALLPLKFASMNT TAAPFETHSAILSKFVITTLVYAVAWAIETKLETRANSYHHAIISNISLLVGSLATVL LVLILVPGLGRRLEIQADAACVDLKSQSPFLYEFGVGALTGVLRSDMELLFSKTLTAT DVQKRLSIPFTCLKDFEFHGSNSAHLRVEDQNGSIWPFALSTRKKGYPKPIFSKGWLQ FVRCSHLCEGDRVEFYKDTKANGLYRIQVQRCIKLFGKKCWVTPPLDQRRVNFEEGTE AAAEAEAKEEESKKNI" gene complement(885811..887229) /locus_tag="TCM_042511" /note="dbxref CacaoGD:Thecc1EG042511" mRNA complement(885811..887229) /locus_tag="TCM_042511" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s00430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042515t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s02100.1" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.51 coverage" CDS complement(886502..886909) /locus_tag="TCM_042511" /note="paralog of Thecc1EG042515t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17792.1" /db_xref="Phytozome:POPTR_0012s02100.1" /translation="METMFSKQLTDTDLKKRLSIPTQCLNHFRFDKGHSTSVQVEDEN GKAWQFKCRVRREGYQKPVFCEGWLKFVRYTNLRPGDRVEFYKDTEAEGLYRIQVQRR VKLLGKEFWANLRPDEQRINFEERTEAAAKEEK" gene complement(887940..888536) /locus_tag="TCM_042512" /note="dbxref CacaoGD:Thecc1EG042512" mRNA complement(887940..888536) /locus_tag="TCM_042512" /product="ABI3/VP1 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s22940.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0004s22940.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS complement(888044..888466) /locus_tag="TCM_042512" /codon_start=1 /product="ABI3/VP1 2, putative" /protein_id="EOY17793.1" /db_xref="Phytozome:POPTR_0004s22940.1" /translation="MQELRCFLFLTKPFLFQRLLQQTMKQLFSKVLSPTDIEHRLAVP SEILWAFEFDDKARAADFHVEDVAGQKWHFSCSTRKKDFHPKPVVSKGWRRFVKDKRL RVGDKVVLYKDGEGGSSHKIKTMKRVFKLFGEEVWLES" gene complement(888800..891896) /locus_tag="TCM_042513" /note="dbxref CacaoGD:Thecc1EG042513" mRNA complement(join(888800..889214,889303..889435, 890407..890731,891374..891896)) /locus_tag="TCM_042513" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042514t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032822001" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(889105..889214,889303..889435, 890407..890731,891374..891753)) /locus_tag="TCM_042513" /note="paralog of Thecc1EG042514t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17794.1" /db_xref="Phytozome:GSVIVT01032822001" /translation="MNTAAPFETDSAILTMFVITTLVYAVDWAIEAKLETRSNSYHHV ILSNISLLLESLATVFLVLILVPALGYFILLIWAIYFVGLTYGAWRKLYLLYNAISSV SDLLNELLGRRGLHNEEIIQCSTSSGSSANYTHAFCIFLVAIFLALMNLKFLSVDIPS PFETHSLIMPMFVITILVYATNFHPSFFHEVIRTYISLLTGSLTPVLFALILLPGDLG CGENLKFLKVLTQSCVHDRVGDKTVEVLLLSAFKITYKGILTKAYTATSKFLTLLTKE ETNLYEAAQSSMAAFNKCRMGGLWHKRASVLGKKRKPTE" mobile_element 893957..895389 /note="source:CACAO_M_E44577_F9_scaffold_6 1 1435" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(896027..899092) /locus_tag="TCM_042514" /note="dbxref CacaoGD:Thecc1EG042514" mRNA complement(join(896027..897281,897413..897850, 898218..898704,898930..899092)) /locus_tag="TCM_042514" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042510t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS complement(join(896837..897281,897413..897850, 898218..898704,898930..898942)) /locus_tag="TCM_042514" /note="paralog of Thecc1EG042510t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17795.1" /translation="MSPLVTPFSPCCSNNSTASNHKHVILGFVIATFLAPSSLKFQSM NIAAPFETHSAILTMFVITTLVYAVAWAIETKLETSSNSYHHVILSNISLLLGSLATV LLVLILVPGLGYLILLIWAIYFVGVTYRAWRKLHQLYSTISSVSDFLNKLLGLHNEES IRCSTSSSSSSAKYTLAICIFLVTVFLTLMNLKFLPVNIPSPFETHCDIMTMFIITIL VYASTSYCHEIISKYITLLSGSLAPVLLALILFPGYLGRLMFLVWTIYFVKLSYDAWR KLYQLFNTISSVSDFLNQLLGRRGLHNEETIPYITSSKISTATHQKHVILGLPIAVFL ALLPLRFPSMNTTAAPFETHCAILSKFVITTLLYAVAWAMETKLETCAHSYHRVIISN ISLLLGSLATILLTLILVPGLGYFTLLIWTLFLVKLIYDACQKLHQLYRAISFASHLF NELLGRGCSV" mobile_element complement(902348..905144) /note="source:CACAO_M_E85295_F87_scaffold_10 1 2785" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(908778..909946) /locus_tag="TCM_042515" /note="dbxref CacaoGD:Thecc1EG042515" mRNA complement(908778..909946) /locus_tag="TCM_042515" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0074s00200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042511t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc11261t1" CDS complement(909459..909887) /locus_tag="TCM_042515" /note="paralog of Thecc1EG042511t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17796.1" /translation="MEKIFSKQLTDTDLKKRLSIPTQCLNHFRFDKCHSTSVQVEDEN GKAWHFKCRVRREGYQKPVFCEGWLKFVRYTSLRPGDRVEFYKDTKAEGLYRIQVQRR VKLLGKEFWANLRPFEKRINFEERTEVAAKEEKSKRKLSI" gene 911699..912264 /locus_tag="TCM_042516" /note="dbxref CacaoGD:Thecc1EG042516" mRNA 911699..912264 /locus_tag="TCM_042516" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s22940.1" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg656t1" CDS 911852..912229 /locus_tag="TCM_042516" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17797.1" /translation="MVLILYEEPPPPSLYNTTLSPTRSLLSLTNRRHPLETTGFGWKS FFLVEQRKCHFCPATSSTWKSAARASSSNSKAHKISDGTASLCSMSVGDRTLENSCFI VSCKSLWNEKGFVRNKKHLNSCI" gene complement(913461..916782) /locus_tag="TCM_042517" /note="dbxref CacaoGD:Thecc1EG042517" mRNA complement(join(913461..914035,914352..914501, 914593..914669,914979..915119,915550..915627, 916509..916782)) /locus_tag="TCM_042517" /product="SGNH hydrolase-type esterase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021696t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06790.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc456t6" CDS complement(join(913822..914035,914352..914501, 914593..914669,914979..915119,915550..915627, 916509..916619)) /locus_tag="TCM_042517" /note="paralog of Thecc1EG021696t1" /codon_start=1 /product="SGNH hydrolase-type esterase superfamily protein" /protein_id="EOY17798.1" /db_xref="Phytozome:POPTR_0008s06790.1" /db_xref="TAIR:AT3G11210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCD7" /translation="MVGPARPQFVLFGSSIVQLSFSNGGWGAILADVYARKADILLRG YYGWNSRRAVEVLDHVFPKDAATQPSLIITYFGGNDSMGPHPSGLGPHVPLNEYIEHM RKIAIHLKSLSDSTRLIFLTCPPVDEDRVSKNTSEFFSHLIRTNELCQKYSEACVKLC QELDVKVVDLFTAFQRRDNWTADCFTDGVHLSAEGSKIVVAEILKVLKEAEWQPSLHW KAMPTEFSEDSPYDLVAADGKTTLNPSEWTFHRAIQWD" gene complement(917473..922278) /locus_tag="TCM_042518" /note="dbxref CacaoGD:Thecc1EG042518" mRNA complement(join(917473..918354,918503..918616, 918804..918983,919092..919183,919816..919927, 920164..920382,920712..920748,920934..921034, 921156..921251,921404..921529,921658..921812, 922076..922278)) /locus_tag="TCM_042518" /product="ABC2" /inference="alignment:exonerate- protein:2:ricco:28833.m000154" /inference="similar to AA sequence:ricco:28833.m000154" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg696t2" CDS complement(join(918151..918354,918503..918616, 918804..918983,919092..919183,919816..919927, 920164..920382,920712..920748,920934..921034, 921156..921251,921404..921529,921658..921812, 922076..922259)) /locus_tag="TCM_042518" /note="dbxref ricco:28833.m000154" /codon_start=1 /product="ABC2" /protein_id="EOY17799.1" /db_xref="TAIR:AT2G40090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04212" /translation="MVVRSLWRSRPKLAVAATALCTGGAAATIATSDDPATALKVCTT VPLRLVRDSVTAASIVVDYEYSLWGLPEGSNERAKVKHEVHLRSARKLQELCFRNGGI YIKLGQHIGQLEYLVPQEYVQTMRESMLNRCPVSSYDQVCEVFKKELGETPDKIFNEF DPRPIASASLAQVHVARTHDGQKVAVKVQHTHMTDTAAADQATVEFIVNSLHWLFPSL DYRWLVAEIRESLPKELDFLIEAKNSVKCLENFQKLSPHIADYVYAPEVHWSLSTSKL LTMEFMDGAQVNDVIAIRRLGIQPNDVARLVSQTFAEMMFKHGFVHCDPHAANLLVRP LPSGKSSIFGKKKPQLILLDHGLYKELDFSTRFNYASLWRALVFADANGIKENSVKLG AGEDLYVLFAGILTMRPWNRVIDPAVDHLVIKGTDSDLSELQMYASQYFPQISELLRR LPRVILLMLKTNDCLRAVNNSLLQGSSLETFLVIGKVSSEAVVEAKMMQKKSLLRWLN IWLEEVILEARLLVMQMALWLLQVRKALTWT" gene complement(922901..926750) /locus_tag="TCM_042519" /note="dbxref CacaoGD:Thecc1EG042519" mRNA complement(join(922901..923227,923325..923406, 923535..923587,923748..923839,923928..924087, 924290..924368,924615..924771,925004..925079, 925189..925415,925543..925758,926526..926750)) /locus_tag="TCM_042519" /product="Elongator complex protein 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041355t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19680.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg675t3" mRNA complement(join(922902..923587,923748..923839, 923928..924087,924290..924368,924615..924771, 925004..925079,925189..925415,925543..925704, 926299..926332)) /locus_tag="TCM_042519" /product="Elongator complex protein 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041355t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19680.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg675t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg675t3" mRNA complement(join(922902..923587,923748..923839, 923928..924087,924290..924368,924615..924771, 925004..925079,925189..925415,925594..925623)) /locus_tag="TCM_042519" /product="Elongator complex protein 4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041355t1" /inference="similar to AA sequence:Phytozome:GSVIVT01003946001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc853t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg675t3" CDS complement(join(923123..923227,923325..923406, 923535..923587,923748..923839,923928..924087, 924290..924368,924615..924771,925004..925079, 925189..925415,925543..925675)) /locus_tag="TCM_042519" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041355t1" /codon_start=1 /product="Elongator complex protein 4 isoform 1" /protein_id="EOY17800.1" /db_xref="Phytozome:POPTR_0010s19680.1" /db_xref="TAIR:AT3G11220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67WD2" /translation="MAAAKTRTSSFSRNLSAAAPSQGPGLKCGPNGTVFLSSGISDLD KILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPAIDPRGFLGTL PSPAASKDEKSHKHDPDQEKGLRIAWQYKKYFGESQLNFDGQRDGKHEYSNEFDLRKP LERHFLSAQRVDCVSIQDSPNLSALQDRSATFLSQYPRNDGSISCAGRIAIQSFSAPQ CAYSNMEWDMLSFIRSLKSMVRSSNAVALITFPPSLLSPSFCKRWQHMADTLLSVKAI PDEDKELSQLLTGYQDMVGFLNVHKVARINTQVPVILDATTFSIKLQKRRKQSTNHHK NEKPSEMKNRIHPYCIVHKVVAYPSKPLGEPDRRWLLSYVKWESLRTQSNLLY" CDS complement(join(923420..923587,923748..923839, 923928..924087,924290..924368,924615..924771, 925004..925079,925189..925415,925543..925675)) /locus_tag="TCM_042519" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041355t1" /codon_start=1 /product="Elongator complex protein 4 isoform 2" /protein_id="EOY17801.1" /db_xref="Phytozome:POPTR_0010s19680.1" /db_xref="TAIR:AT3G11220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J676" /translation="MAAAKTRTSSFSRNLSAAAPSQGPGLKCGPNGTVFLSSGISDLD KILGGGFPLGSLVMVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPAIDPRGFLGTL PSPAASKDEKSHKHDPDQEKGLRIAWQYKKYFGESQLNFDGQRDGKHEYSNEFDLRKP LERHFLSAQRVDCVSIQDSPNLSALQDRSATFLSQYPRNDGSISCAGRIAIQSFSAPQ CAYSNMEWDMLSFIRSLKSMVRSSNAVALITFPPSLLSPSFCKRWQHMADTLLSVKAI PDEDKELSQLLTGYQDMVGFLNVHKVARINTQVPVILDATTFSIKLQKRRFLVLECLN QAPVDGSSGTSYGTSGSCSGSSKTGNLDF" CDS complement(join(923420..923587,923748..923839, 923928..924087,924290..924368,924615..924771, 925004..925079,925189..925377)) /locus_tag="TCM_042519" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041355t1" /codon_start=1 /product="Elongator complex protein 4 isoform 3" /protein_id="EOY17802.1" /db_xref="Phytozome:GSVIVT01003946001" /db_xref="TAIR:AT3G11220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67WD2" /translation="MVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPAIDPRGFLGT LPSPAASKDEKSHKHDPDQEKGLRIAWQYKKYFGESQLNFDGQRDGKHEYSNEFDLRK PLERHFLSAQRVDCVSIQDSPNLSALQDRSATFLSQYPRNDGSISCAGRIAIQSFSAP QCAYSNMEWDMLSFIRSLKSMVRSSNAVALITFPPSLLSPSFCKRWQHMADTLLSVKA IPDEDKELSQLLTGYQDMVGFLNVHKVARINTQVPVILDATTFSIKLQKRRFLVLECL NQAPVDGSSGTSYGTSGSCSGSSKTGNLDF" gene complement(926716..932068) /locus_tag="TCM_042520" /note="dbxref CacaoGD:Thecc1EG042520" mRNA complement(join(926716..928068,928261..929341, 931775..932068)) /locus_tag="TCM_042520" /product="Malectin/receptor protein kinase family protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003474.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046199t1" /inference="similar to AA sequence:frave:gene04245" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v1SvscxLoc98t7_G2" CDS complement(join(927100..928068,928261..929304)) /locus_tag="TCM_042520" /note="dbxref frave:gene04245; paralog of Thecc1EG046199t1" /codon_start=1 /product="Malectin/receptor protein kinase family protein" /protein_id="EOY17803.1" /db_xref="TAIR:AT3G51550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94EF4" /translation="MGNPSQFLSGYFKVFTKAAGNRKSEKSKGKHARIQYPVALPEEI CHQFSLPEIRAATNNFHPDLVIGEGAFGNVYKGIVDDRTMVAVKRLRRDEVEGVKEFQ TEVQLLCQLRHQHLVSLIGYCNDKDEKIVVCELMKNGSLRDHLHGCGYDPLPWKQRLE ICIGAARGLHYLHTGAKHAVIHRDVRSNNILLDDKWVSKVSDFGLSKMRPQPSYNTSK ALEKIESKVKGTFGYLDPEYFRNSEISEKCDVYSFGVVLFEVLCARPAIDPSQNRCEV NLSEWIHHCIGEGTIYNIIDPYLKGKIAPECFKIFVDIAHCCINEEGDKRPEIGEVEL MLELALEMQEKADSIKVATNNFHPNMLIGRGSSGNVYKGFIDDGNLVAVKRLNPDAAQ ALNKFQTELQLLCQLRHQHLVSLFGICNDKDEMILVSELVKNGTLRDHLYASEYDPLP WKQRLKICIDAARGLHYLHTRVKPAIIHSDVKSSNILLDYKWFGKLSDFGLSKMCSQL SYSSTSKALEKVNSVVKGSNGCLDPEYLKDGGLPKECDVYSFGVVLFEVLCARKVFDP TLHEYEQHLADWVHRCTDRGTIYNIIDPYLKGKIAPGCFQRFMDLAYYCTYLEGNTWP EMDEVVLMLELALEMQENADSEMKNLDPNGDCMYGEISYLHPCSWS" gene complement(932468..933910) /locus_tag="TCM_042521" /note="dbxref CacaoGD:Thecc1EG042521" mRNA complement(join(932468..932993,933180..933910)) /locus_tag="TCM_042521" /product="Malectin/receptor protein kinase family protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G11400.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042520t1" /inference="similar to AA sequence:ricco:27800.m000036" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage" CDS complement(join(932661..932993,933180..933725)) /locus_tag="TCM_042521" /note="dbxref ricco:27800.m000036; paralog of Thecc1EG042520t1" /codon_start=1 /product="Malectin/receptor protein kinase family protein" /protein_id="EOY17804.1" /db_xref="TAIR:AT3G51550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94EF4" /translation="MGNLSQFLPCCFKVFTKVAGNRKSISTGNEKHARIKYPAALPEE IYHQRQFSLTEIKAATNNFHPKSLVREGYFVKVYKGIVDYGNLVAVKRFKPDSVQGLD GFQTEVQLLCQLRHQNLVSFIGFCNDKDEEILVYELMKNGSLRDHLCGCNYDPLLWKQ RLEICIGAARGLHYLHTGAKHARDGGLSEKCDVYSFGVVLFEVLCARPVIDRRLDEHK QHLVYWVCRCIGDGTIYNIIDSYLKGKIAPECFKIFVDIAYCCISEKGDTRPEMGEVE MMLELALKMQEKADSK" gene complement(935011..939819) /locus_tag="TCM_042522" /note="dbxref CacaoGD:Thecc1EG042522" mRNA complement(join(935011..936436,936897..937111, 937775..937894,938508..939819)) /locus_tag="TCM_042522" /product="Malectin/receptor protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g50430.1.2" /inference="similar to AA sequence:frave:gene04245" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7845t31" CDS complement(join(935283..936436,936897..937111, 937775..937894,938508..939679)) /locus_tag="TCM_042522" /note="dbxref frave:gene04245" /codon_start=1 /product="Malectin/receptor protein kinase family protein" /protein_id="EOY17805.1" /db_xref="TAIR:AT3G51550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94EF4" /translation="MGNPSHFLSGFFKAFTKAAGNRKSETSKGNEKHARIKYPATLPK EICRQFSLTEIKAATNNFHPKSLVREGYFVKVYKGIVDYGNLVAVKRFKPDSVQGLDG FQTEVQLLCQLRHQNLVSLIGFCNDKDEKILVYELMKNGSLRDHLYGCNYDPLPWKQR LEICIGAARGLHYLHTGAKHAVIQRDIKSRNILLDDKWVSKLSSFFFSKMRPQPSYSS TSKALKPLHSEIFFGTLGYWDPEYQRDGGLSEKCDVYSFGVVLFEVLCARPVIDRRLD EHKQHLVYWVCRCIGDGTIYNIIDSYLKGKIAPECFKIFVDIAYCCISEKGDTRPEMG EVEMMLELALKMQEKADSEMKDVDPHGECTYGEVSFSIPVSDHSFPVDNSSPLESRCE KGDTQLGVGEMELMLEVALEMQEKADTELVDVDPHRKYIRSLLFYFRKASIFAPPPAL SHKISPSSLTQTGGTKKMLPTLQRAAQTQGSLLSNWRYKPKALYSPTGGTTQDPDPDL LLSPFSFTTSPMGNSSHFLPSCFKVFTKTAGYRKSDISEGNEKHARIQYPATLPEEIY RQRQFSLTEIKAATNNFHPISLIAEGFFGNVFKGILDDGNFVAVKRFFPDSVQDALNE FQAEVKLLCQLRHQHLVSLIGFCNDKDELILVYPLMKNGTLCDHLYGSGCDPLPWKQR LEICIGAARGLHYLHTGIKYAIIHSNVDSNNILLDDKWVSKLSSFGFSKMRPQPSYIN TSKALKNIDAPMAGILGYVDPEYMRGCGLSEKSDVYSFGVVLFEVLCARPVFDRRLDE YKQHLVYWVCCCIGDGTIYNIIDSYLKGKIAPECFKIFVNIAYCCISEKGERRPDMGE VELMLELALEMQEKADSEVTNVDPYGECMY" gene complement(941858..944835) /locus_tag="TCM_042523" /note="dbxref CacaoGD:Thecc1EG042523" mRNA complement(join(941858..942739,943627..944835)) /locus_tag="TCM_042523" /product="Malectin/receptor protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g50430.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042529t1" /inference="similar to AA sequence:ricco:29915.m000488" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg850t5" CDS complement(join(942501..942739,943627..944680)) /locus_tag="TCM_042523" /note="dbxref ricco:29915.m000488; paralog of Thecc1EG042529t1" /codon_start=1 /product="Malectin/receptor protein kinase family protein" /protein_id="EOY17806.1" /db_xref="TAIR:AT3G51550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6ZRT0" /translation="MGNPSHFLPSCFRAGNRKPEISKGNEKHARIAALPEGIYRQFSL TEIKAATNNFHPKSLIGVGGFGNMFKGIVDDGNVVAVKRFGPDSSRYAVSEFQNEVQL LCQLCHQHLVSLIGYCNDKDEKIVVFEFMNNGSLGDHLYGCGYDPLPWKQRLEICIGA ASGLHYLHTGAKHAVIHRDVKSSNILLDDKWVSKFSDFGLSKMRPQPSYNMSKALKKI ESRTMGTLGYMAPEYAKRDELSEKCDVYSFGVVLFEVLCAREVFDLSLDKHEVNLVDW VRHFIGEGTIYNIIDPYLKGRIAPECFKIFVDIAYCCVSEEGDRRPEMGEVELMLELA LEMQEKADSEMKDVDPHVIDLRLDEDERDLSTWVRRCIGKGIIYNIIDPYLKGRIAPE CFKIFVDRSCLSSGFLAGRDVRSLLHSAYGSSPDSPPL" gene complement(948437..951836) /locus_tag="TCM_042524" /note="dbxref CacaoGD:Thecc1EG042524" mRNA complement(join(948437..950049,951763..951836)) /locus_tag="TCM_042524" /product="Malectin/receptor protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g27710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042529t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400052063" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg870t1" CDS complement(948693..949832) /locus_tag="TCM_042524" /note="paralog of Thecc1EG042529t1" /codon_start=1 /product="Malectin/receptor protein kinase family protein" /protein_id="EOY17807.1" /db_xref="Phytozome:PGSC0003DMP400052063" /db_xref="TAIR:AT3G51550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94EF4" /translation="MGNPSYFLPSCFKVFTRTAGNRKSEKSKGNEKHARIQYPAALPE EICRQFSLTEITAATNNFHPKYLIAVGYFEKVFEGIVDDGHVVAVRRFNPDSVRAVFN EFQTEVKLLCQLRHQHLVSLIGFCNDKDELILVYELMKNGTLCHHLYGSVYDPLPWKQ RLEICIGAARGLHYLHTGAKHTVIHRDVKSTNILLDDKWVSKLSNLMFAKMRPQPSYS NTSNVLKRIDSRLAGTVGYVDPEYLGGCGVSEKCDVYSFGVVLFEVLCARKVVDPTLE EYELRLPDWVRHCIGKGTIYNIIDPHLKGKIAPECFKIFVDIAYCCISEKGDTRPEMG EVELMLELALEMQEKADSQMRDIDPHSECMYGEISFSISVSDYSL" gene complement(952037..954026) /locus_tag="TCM_042525" /note="dbxref CacaoGD:Thecc1EG042525" mRNA complement(join(952037..952682,952807..954026)) /locus_tag="TCM_042525" /product="Malectin/receptor protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029106001.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042524t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400052063" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg850t6" CDS complement(join(952681..952682,952807..953878)) /locus_tag="TCM_042525" /note="paralog of Thecc1EG042524t1" /codon_start=1 /product="Malectin/receptor protein kinase family protein" /protein_id="EOY17808.1" /db_xref="Phytozome:PGSC0003DMP400052063" /db_xref="TAIR:AT3G51550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94EF4" /translation="MGNPSHFLPSCFTAGNRKPEISKGNEKHARIQYPAPLPEEICRQ FSLTEIKAATNNFHPKSLIGVSYFAKVFKGIVDDGNVVAVKRLRPDSAQKALKEFQKE VLMLCQLRHQHLVSLIGYCNDKGEKIVVYELMKNGTLREHLYGSDYDPLPWKQRLEIC IGTARGLHYLHTGAKHAVIHRDIKSSNILLDDEWVSKFSNFTLSEMRSQPSYSDTSKL LKKIISPLAGTKGYVDPECLKGYGVSEKSDVYSFGVVLFEVLCGRKVVDPILDENEQY LLGWVCQCIDKGTIYNIIDPHLKRKIAPECLKIFVDIAYSCISENGDTRPEMGEVELM LELALEMQEKADSQMRDVDPHSE" gene complement(954355..957366) /locus_tag="TCM_042526" /note="dbxref CacaoGD:Thecc1EG042526" mRNA complement(join(954355..955354,955720..957366)) /locus_tag="TCM_042526" /product="Malectin/receptor protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029106001.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042529t1" /inference="similar to AA sequence:ricco:27800.m000036" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc1205t1" CDS complement(join(955185..955354,955720..956929)) /locus_tag="TCM_042526" /note="dbxref ricco:27800.m000036; paralog of Thecc1EG042529t1" /codon_start=1 /product="Malectin/receptor protein kinase family protein" /protein_id="EOY17809.1" /db_xref="TAIR:AT3G51550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94EF4" /translation="MGNPSHFLPSCFKVFTKTAGHRKSEIGKGNEKHARVQYPTALPE EIYHQRQFSLTEIKAATSNFHPKSLIAEGYFGNVFKGIVDDGNLVAVKRFNPDSVRDA LNEFQTEVKLLCQLRHRHLVPLIGYCNDKDEKIVVYELMKNGSLRDHLYGSNYDPLPW KQRLEICIGAARGLHYLHTGAKHAVIHRNVTSKSILLDDKWVGKVSNLALSKMRSQPS YSSRSKALKKMNSERVMGTFGYLAPEYAIHGDFSEKCDVYSFGVVLLEVLCARKVLDP TLDEYEVGLLGWVCQCIGKGTIYNIIDSHLKRKIAPECFKIFVEIAYSCISEKGDTRP EMGEVELMLELALQMQEKADSELVDLDSQGEYMYGEISFCIPVPDHSLRADSINSTSE FEAEAGDLYSRREKESLTKGPIKERSWALAQMGRYSGLSPKQPRGYGAFCLPEPKARK ANLVEWQKK" gene complement(959728..962459) /locus_tag="TCM_042527" /note="dbxref CacaoGD:Thecc1EG042527" mRNA complement(join(959728..960105,961679..962459)) /locus_tag="TCM_042527" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042524t1" /inference="similar to AA sequence:ricco:27800.m000036" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS complement(join(959773..960105,961679..961897)) /locus_tag="TCM_042527" /note="dbxref ricco:27800.m000036; paralog of Thecc1EG042524t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17810.1" /translation="MVFIPRGRRAKRRRFRGASRSWKVQAKRCRFEQFHRYQTVRFEI CLVGFKRQTGCSGLGLLRATELGQSQPNKVFDLSLDEYELDLADWVRQCISEGTIYNV IDPYLKGRIAPECFKTFVDVAYCCISEKGDKRPEMGEVELMLEFALEMQEKADSEMVD VDPHGQCMYGEVSFCIPVSDHGL" mobile_element 960335..960465 /note="source:CACAO_M_S_E610_F15_scaffold_1 976 1106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(962573..964430) /note="source:CACAO_M_E42485_F15_scaffold_5 1 1856" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 965016..966209 /locus_tag="TCM_042528" /note="dbxref CacaoGD:Thecc1EG042528" mRNA join(965016..965526,965629..966209) /locus_tag="TCM_042528" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007585t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(965436..965526,965629..966149) /locus_tag="TCM_042528" /note="paralog of Thecc1EG007585t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17811.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BF87" /translation="MTSLTERIIPMISSAKTSKDVWDRLSTALTTDELTLAGSVVPNT NLILHVLNGVGSEYKDIVAAVRARDTPISLEELHDKLIEYESFLAQEVAKHANGFTAN AAQYNRNKSPHSQYNNRSNDQHSQFRFNQYTDQHSNGNSKQSGGYTNNNNSSKRNFFY QYCDKKGHVAKDCHTLKRLLGILVPPKANPCEHVKLFVIVSFL" gene complement(966609..968678) /locus_tag="TCM_042529" /note="dbxref CacaoGD:Thecc1EG042529" mRNA complement(966609..968678) /locus_tag="TCM_042529" /product="Malectin/receptor protein kinase family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042524t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032888001" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(967478..968617) /locus_tag="TCM_042529" /note="paralog of Thecc1EG042524t1" /codon_start=1 /product="Malectin/receptor protein kinase family protein" /protein_id="EOY17812.1" /db_xref="Phytozome:GSVIVT01032888001" /db_xref="TAIR:AT5G28680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H477" /translation="MGNPSHFLPSCFKVFTKTAGNRKSEISKGNEKHARIQYPVALPE EIYRQFSLTEIKAATNNFHPKSLIAEAYSGNVFKGIVNDGNLVAVKRLNPDSLRAGFN EFQTEVKLLCQLRHQHLVSLIGFCNDKDELILVYELMKNGTLCHHLYGSGYDPLPWKQ RLEICIAAARGLHYLHTGAKHAVIHRHVTSNSILLDDKWVGKLSDFELSKMRPQPSYH ITSKALERIDSRVMGTYGYADPEYIRDGGVSEKCDVYSFGVVLFEVLCARKVVDRTLN QSEIHLPDWVRQCIGKGTMYDIIDPHLKRKIAPECLKIFVDIAYCCISEKGDTRPEMG EVELMLELALEMQEKADSQMRDVDPHSECMHREVPFAISVSDHSL" gene 974213..976883 /locus_tag="TCM_042530" /note="dbxref CacaoGD:Thecc1EG042530" mRNA join(974213..974698,974784..975055,976140..976308, 976561..976883) /locus_tag="TCM_042530" /product="Alpha/beta hydrolase related protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028429t2" /inference="similar to AA sequence:Phytozome:GSVIVT01032833001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12921t00001" CDS join(974419..974698,974784..975055,976140..976205) /locus_tag="TCM_042530" /note="paralog of Thecc1EG028429t2" /codon_start=1 /product="Alpha/beta hydrolase related protein" /protein_id="EOY17813.1" /db_xref="Phytozome:GSVIVT01032833001" /db_xref="TAIR:AT2G40095.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T866" /translation="MGFSKEEKSRRLWRGVKTLFFLITMMISFLLFSAPVFLVVADAL LPSALLSASLSEPSSLSFKSLSSHFSNYDFRYSLIDIPLISIIRSAVIICVYSFCDGP RLSRGPYLGITMICSVSSLIFVSLKASFVFSSSVHREGYVTAMETALFISSLALAIAH MIVAYRTSCRERRKLLVYKIDIEAISACKNGFPRYQKILQEERVK" gene 976681..985675 /locus_tag="TCM_042531" /note="dbxref CacaoGD:Thecc1EG042531" mRNA join(976681..977290,978224..978641,979101..979252, 979596..979718,980208..980352,980840..980901, 981371..981587,981804..982724,983195..983444, 983539..983977,984242..984441) /locus_tag="TCM_042531" /product="Nuclear pore complex protein-related isoform 1" /inference="alignment:exonerate-protein:2:frave:gene20963" /inference="similar to AA sequence:Phytozome:GSVIVT01032835001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc276t13" CDS join(977268..977290,978224..978641,979101..979252, 979596..979718,980208..980352,980840..980901, 981371..981587,981804..982724,983195..983444, 983539..983816) /locus_tag="TCM_042531" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nuclear pore complex protein-related isoform 1" /protein_id="EOY17814.1" /db_xref="Phytozome:GSVIVT01032835001" /db_xref="TAIR:AT5G05680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFK6" /translation="MVTGFSSQISKTLPFSSPFVTFSSLNSVIAEKKLDALPLSPEKE RKREMRFSFELAESNEDDSRRSLTPKEGVQWVPLQNHPVFTSAVGSGATATASASVRA VKNLLAWDGASRLYYWDSNKRCLHRISIRLGEPEPTSIVAASPSKVLQADMELNFVVN KISINRNGSALLLAGSDDLCVMYLYGRTSSKDNSIICRTVSIGSQIYSNESSAIRILQ VSWHPYSDIHVGILSSDSVFRLFDLSSGVMQPEQEYYLQPVEPGRSRNAASICPVDFS FGGDHLWDRFSVFVLFSDGSVYILCPVVPFGSVYKWESILEMYGDAHTFGLKSANSVA VNNSNLAISWLEATFPELAQQGTDGENPSTIKARSHALFDASLALQGPLHKVCRDGED EALAVRGAECEGRAVSFLYNLVSKDSILVTAWSGGQLQIDALADEIQPVWITGSAPRL RVDSHDHVLGIAMICEPNPAELSIVKLDQPLDNSVWLGHLPPLLRLAIVDLALPRKIE SSYLITMYVDPLMPERIYSLHEGGVDSIVLHFLPFTSQINGKDESIKTPSVHPVLCTC QGETSSPSPLYGFVSLSDSFGYSWVVVVTSTQECVVLEMKTWNLLLPIQVDKEKPISL EEQKEKDTPNIISKELLGGPKSVLAPQASPNLRSVSADSIEGRSALHQYFKLFHENYV EYAHKVYFELKHHGPQLKRIIDDQHARLNEAQQKILNVETKQSMLEERIDCAVRLQNS LEQRLQHLRSLPGAHKKPLSRAEREFKSELDQFTGVELDALQASINTLRGRLRRYTQS SKDNLANQRRKMPGRNHMQDAQISQLKSSLAKLSLVNSESSKKVKLVESALKGKESSI NKTISS" mRNA join(978299..978641,979101..979252,979596..979718, 980208..980352,980840..980901,981371..981587, 981804..982724,983195..983444,983539..983977, 984242..984961,985048..985178,985263..985368, 985479..985675) /locus_tag="TCM_042531" /product="Nuclear pore complex protein-related isoform 2" /inference="alignment:exonerate-protein:2:frave:gene20963" /inference="similar to AA sequence:Phytozome:GSVIVT01032835001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc274t6; alternateUTRof:Thecc1EG042531t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc276t13" mRNA join(978299..978641,979101..979252,979596..979718, 980208..980352,980840..980901,981371..981587, 981804..982724,983195..983444,983539..983977, 984242..984957,985045..985178,985263..985368, 985478..985675) /locus_tag="TCM_042531" /product="Nuclear pore complex protein-related isoform 2" /inference="alignment:exonerate-protein:2:frave:gene20963" /inference="similar to AA sequence:Phytozome:GSVIVT01032835001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7936t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc276t13" CDS join(978345..978641,979101..979252,979596..979718, 980208..980352,980840..980901,981371..981587, 981804..982724,983195..983444,983539..983816) /locus_tag="TCM_042531" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nuclear pore complex protein-related isoform 2" /protein_id="EOY17815.1" /db_xref="Phytozome:GSVIVT01032835001" /db_xref="TAIR:AT5G05680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFK6" /translation="MRFSFELAESNEDDSRRSLTPKEGVQWVPLQNHPVFTSAVGSGA TATASASVRAVKNLLAWDGASRLYYWDSNKRCLHRISIRLGEPEPTSIVAASPSKVLQ ADMELNFVVNKISINRNGSALLLAGSDDLCVMYLYGRTSSKDNSIICRTVSIGSQIYS NESSAIRILQVSWHPYSDIHVGILSSDSVFRLFDLSSGVMQPEQEYYLQPVEPGRSRN AASICPVDFSFGGDHLWDRFSVFVLFSDGSVYILCPVVPFGSVYKWESILEMYGDAHT FGLKSANSVAVNNSNLAISWLEATFPELAQQGTDGENPSTIKARSHALFDASLALQGP LHKVCRDGEDEALAVRGAECEGRAVSFLYNLVSKDSILVTAWSGGQLQIDALADEIQP VWITGSAPRLRVDSHDHVLGIAMICEPNPAELSIVKLDQPLDNSVWLGHLPPLLRLAI VDLALPRKIESSYLITMYVDPLMPERIYSLHEGGVDSIVLHFLPFTSQINGKDESIKT PSVHPVLCTCQGETSSPSPLYGFVSLSDSFGYSWVVVVTSTQECVVLEMKTWNLLLPI QVDKEKPISLEEQKEKDTPNIISKELLGGPKSVLAPQASPNLRSVSADSIEGRSALHQ YFKLFHENYVEYAHKVYFELKHHGPQLKRIIDDQHARLNEAQQKILNVETKQSMLEER IDCAVRLQNSLEQRLQHLRSLPGAHKKPLSRAEREFKSELDQFTGVELDALQASINTL RGRLRRYTQSSKDNLANQRRKMPGRNHMQDAQISQLKSSLAKLSLVNSESSKKVKLVE SALKGKESSINKTISS" CDS join(978345..978641,979101..979252,979596..979718, 980208..980352,980840..980901,981371..981587, 981804..982724,983195..983444,983539..983816) /locus_tag="TCM_042531" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Nuclear pore complex protein-related isoform 2" /protein_id="EOY17816.1" /db_xref="Phytozome:GSVIVT01032835001" /db_xref="TAIR:AT5G05680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFK6" /translation="MRFSFELAESNEDDSRRSLTPKEGVQWVPLQNHPVFTSAVGSGA TATASASVRAVKNLLAWDGASRLYYWDSNKRCLHRISIRLGEPEPTSIVAASPSKVLQ ADMELNFVVNKISINRNGSALLLAGSDDLCVMYLYGRTSSKDNSIICRTVSIGSQIYS NESSAIRILQVSWHPYSDIHVGILSSDSVFRLFDLSSGVMQPEQEYYLQPVEPGRSRN AASICPVDFSFGGDHLWDRFSVFVLFSDGSVYILCPVVPFGSVYKWESILEMYGDAHT FGLKSANSVAVNNSNLAISWLEATFPELAQQGTDGENPSTIKARSHALFDASLALQGP LHKVCRDGEDEALAVRGAECEGRAVSFLYNLVSKDSILVTAWSGGQLQIDALADEIQP VWITGSAPRLRVDSHDHVLGIAMICEPNPAELSIVKLDQPLDNSVWLGHLPPLLRLAI VDLALPRKIESSYLITMYVDPLMPERIYSLHEGGVDSIVLHFLPFTSQINGKDESIKT PSVHPVLCTCQGETSSPSPLYGFVSLSDSFGYSWVVVVTSTQECVVLEMKTWNLLLPI QVDKEKPISLEEQKEKDTPNIISKELLGGPKSVLAPQASPNLRSVSADSIEGRSALHQ YFKLFHENYVEYAHKVYFELKHHGPQLKRIIDDQHARLNEAQQKILNVETKQSMLEER IDCAVRLQNSLEQRLQHLRSLPGAHKKPLSRAEREFKSELDQFTGVELDALQASINTL RGRLRRYTQSSKDNLANQRRKMPGRNHMQDAQISQLKSSLAKLSLVNSESSKKVKLVE SALKGKESSINKTISS" gene complement(984622..988994) /locus_tag="TCM_042532" /note="dbxref CacaoGD:Thecc1EG042532" mRNA complement(join(984622..984958,985045..985175, 985260..985366,985477..985555,985648..985734, 987208..987453,987627..987776,988060..988976)) /locus_tag="TCM_042532" /product="Cytochrome P450 superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000402t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19710.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02577t00001" CDS complement(join(984847..984958,985045..985175, 985260..985366,985477..985555,985648..985734, 987208..987453,987627..987776,988060..988581)) /locus_tag="TCM_042532" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG000402t1" /codon_start=1 /product="Cytochrome P450 superfamily protein isoform 1" /protein_id="EOY17817.1" /db_xref="Phytozome:POPTR_0010s19710.2" /db_xref="TAIR:AT5G05690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42569" /translation="MAFFVYYYLCFTAVVSAVFFLLLRSSRLRRLCLPPGNLGLPFVG ETLQLIAAYKTENPEPFIDERVSRYGSIFTTHVFGEPTVFSADPETNRFILQNEGKLF ECSYPGSISNLLGKHSLLLMKGSLHKRMHSLTMSFANSSIIRDHLLVDIDRLVRLNLD SWTDRVFLMEEAKKITFELTVKQLMSFDPGEWSESLRKEYVLVIEGFFTVPLPLFSTT YRRAIKARTKVAEALSLIVRERRKEFEGGERKNDMLAALLAGDDNFSDEEIVDFLVAL LVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEGIRAKKSESEALEWIDYKSMPFTQ CVVNETLRVANIISGVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARTFN PWRWQNNSGMSCPGNVYTPFGGGPRLCPGYELARVELSVFLHHLVTRFSWVPAEEDKL VFFPTTRTQKRYPINVQRRLQNATLAT" mRNA complement(join(985150..985175,985260..985555, 985648..985734,987208..987453,987627..987776, 988060..988994)) /locus_tag="TCM_042532" /product="Cytochrome P450 superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000402t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19710.5" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7936t4; inference alignment:Newbler:10:TSA:cgbaP1_g02577t00001" CDS complement(join(985403..985555,985648..985734, 987208..987453,987627..987776,988060..988581)) /locus_tag="TCM_042532" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG000402t1" /codon_start=1 /product="Cytochrome P450 superfamily protein isoform 2" /protein_id="EOY17818.1" /db_xref="Phytozome:POPTR_0010s19710.5" /db_xref="TAIR:AT5G05690.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42569" /translation="MAFFVYYYLCFTAVVSAVFFLLLRSSRLRRLCLPPGNLGLPFVG ETLQLIAAYKTENPEPFIDERVSRYGSIFTTHVFGEPTVFSADPETNRFILQNEGKLF ECSYPGSISNLLGKHSLLLMKGSLHKRMHSLTMSFANSSIIRDHLLVDIDRLVRLNLD SWTDRVFLMEEAKKITFELTVKQLMSFDPGEWSESLRKEYVLVIEGFFTVPLPLFSTT YRRAIKARTKVAEALSLIVRERRKEFEGGERKNDMLAALLAGDDNFSDEEIVDFLVAL LVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEGIRAKKSESEALEWIDYKSMPFTQ CVVNETLRVANIISGVFRRAMTDINIKGQKYKPFCHRPDNHVMLQRHSPRS" mobile_element 986689..986730 /note="source:CACAO_M_E42514_F40_scaffold_5 133 174" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(989355..992926) /locus_tag="TCM_042533" /note="dbxref CacaoGD:Thecc1EG042533" mRNA complement(join(989355..989396,990397..990874, 992904..992926)) /locus_tag="TCM_042533" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS complement(990443..990679) /locus_tag="TCM_042533" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17819.1" /translation="MAMGWIINYQASFGFDDDFKKERLPFVCIKTIIKRKYLSFIASN IMELVGQCGAHYDILFALKPLINTRFIILLFFPS" gene complement(998786..1002033) /locus_tag="TCM_042534" /note="dbxref CacaoGD:Thecc1EG042534" mRNA complement(join(998786..999290,999669..999752, 999846..999926,1000179..1000286,1000414..1000458, 1000547..1000604,1000690..1000818,1000990..1001077, 1001649..1001841)) /locus_tag="TCM_042534" /product="High mobility group B1 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G20696.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021706t2" /inference="similar to AA sequence:Phytozome:POPTR_0010s19720.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01507t00002" mRNA complement(join(999025..999290,999669..999752, 999846..999926,1000414..1000458,1000547..1000604, 1000690..1000818,1000990..1001077,1001649..1001853)) /locus_tag="TCM_042534" /product="High mobility group B1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032840001" /inference="alignment:exonerate- protein:2:TAIR:AT1G20696.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021706t2" /inference="similar to AA sequence:Phytozome:POPTR_0010s19720.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11924t00001; inference alignment:Newbler:10:TSA:cgbaL_g01507t00002; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9179t4" CDS complement(join(999261..999290,999669..999752, 999846..999926,1000414..1000458,1000547..1000604, 1000690..1000818,1000990..1001060)) /locus_tag="TCM_042534" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021706t2" /codon_start=1 /product="High mobility group B1 isoform 2" /protein_id="EOY17821.1" /db_xref="Phytozome:POPTR_0010s19720.1" /db_xref="TAIR:AT3G51880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49595" /translation="MKATRSRAAARKDNKETVKPVEDRTVGKRKAALRADKSSKKRTK NVKPAKKDPNKPKRPATAFFVFLEEFRKIYKQEHPKVKAVSAVGKAGGEKWKSLSDAE KAPYEAKAAKRKSEYEKLMAAYNKKQESTDDEEGAESETSKSQVNDKDDADSEEEEEE DEDDD" CDS complement(join(999261..999290,999669..999752, 999846..999926,1000179..1000286,1000414..1000458, 1000547..1000604,1000690..1000818,1000990..1001060)) /locus_tag="TCM_042534" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021706t2" /codon_start=1 /product="High mobility group B1 isoform 1" /protein_id="EOY17820.1" /db_xref="Phytozome:POPTR_0010s19720.1" /db_xref="TAIR:AT3G51880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49595" /translation="MKATRSRAAARKDNKETVKPVEDRTVGKRKAALRADKSSKKRTK NVKPAKKDPNKPKRPATAFFVFLEEFRKIYKQEHPKVKAVSAVGKAGGEKWKSLSDAV MHKTSTVAPSGPGYAPITCSTTLELLWHGQANASLEKAPYEAKAAKRKSEYEKLMAAY NKKQESTDDEEGAESETSKSQVNDKDDADSEEEEEEDEDDD" mRNA complement(join(999899..999926,1000023..1000286, 1000414..1000458,1000547..1000604,1000690..1000818, 1000990..1001077,1001649..1002033)) /locus_tag="TCM_042534" /product="High mobility group B1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032840001" /inference="alignment:exonerate- protein:2:TAIR:AT1G20696.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021706t8" /inference="similar to AA sequence:Phytozome:GSVIVT01032840001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7823t2_C2; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9179t4; inference alignment:Newbler:10:TSA:cgbaL_g01507t00002" CDS complement(join(1000119..1000286,1000414..1000458, 1000547..1000604,1000690..1000818,1000990..1001060)) /locus_tag="TCM_042534" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021706t8" /codon_start=1 /product="High mobility group B1 isoform 3" /protein_id="EOY17822.1" /db_xref="Phytozome:GSVIVT01032840001" /db_xref="TAIR:AT3G51880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49595" /translation="MKATRSRAAARKDNKETVKPVEDRTVGKRKAALRADKSSKKRTK NVKPAKKDPNKPKRPATAFFVFLEEFRKIYKQEHPKVKAVSAVGKAGGEKWKSLSDAV MHKTSTVAPSGPGYAPITCSTTLELLWHGQANASLVLTTGDLDIWYCIGLDGGF" gene 1002571..1005000 /locus_tag="TCM_042535" /note="dbxref CacaoGD:Thecc1EG042535" mRNA join(1002571..1003137,1004358..1005000) /locus_tag="TCM_042535" /product="Light-harvesting complex II protein Lhcb8" /inference="alignment:exonerate- protein:2:ricco:29669.m000843" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021708t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06720.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10032t00001" CDS join(1002622..1003137,1004358..1004675) /locus_tag="TCM_042535" /note="paralog of Thecc1EG021708t1" /codon_start=1 /product="Light-harvesting complex II protein Lhcb8" /protein_id="EOY17823.1" /db_xref="Phytozome:POPTR_0008s06720.1" /db_xref="TAIR:AT2G40100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHN0" /translation="MATATTAAATTSHFFGTRINNLNLGSGRIQSRFGFNLRTKKAPP PPKKAAPKRPSDRLVWFPGATPPEWLDGSMIGDRGFDPFGFGKPAEYLQFDLDSLDQN LAKNVAGEVIGVISETAELKPTPFQPYTEVFGLQRFRECELIHGRWAMLGSLGALAVE ALTGVSWQDAGKVELVEGSSYLGQPLPFSLTALIWIEVLVIGYIEFQRNAELDPEKRL YPGGYFDPLGLASDPQKIDNLKLAEIKHSRLAMVAFLIFGIQAAVTGKGPLSFIASFN N" gene 1006104..1009408 /locus_tag="TCM_042536" /note="dbxref CacaoGD:Thecc1EG042536" mRNA join(1006104..1006211,1006623..1006737,1008066..1008109, 1008655..1008763,1008849..1008904,1008998..1009319) /locus_tag="TCM_042536" /product="Yippee family zinc-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021710t4" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400036065" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01051t00002; alternateUTRof:Thecc1EG042536t1; inference alignment:Newbler:10:TSA:cgbaP2_g00007t00003; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9456t13" mRNA join(1006188..1006224,1006333..1006374,1006622..1006737, 1008066..1008109,1008655..1008763,1008849..1008904, 1008998..1009336) /locus_tag="TCM_042536" /product="Yippee family zinc-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021710t4" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400036065" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00007t00003; inference alignment:Newbler:10:TSA:cgbaP2_g00007t00003" mRNA join(1006190..1006224,1006620..1006737,1008066..1008109, 1008655..1008763,1008849..1008904,1008998..1009342) /locus_tag="TCM_042536" /product="Yippee family zinc-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021710t4" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400036065" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00107t00004_C2; alternateUTRof:Thecc1EG042536t1; inference alignment:Newbler:10:TSA:cgbaP2_g00007t00003; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9456t13" mRNA join(1006325..1006340,1006622..1006737,1008066..1008109, 1008655..1008763,1008849..1008904,1008998..1009342) /locus_tag="TCM_042536" /product="Yippee family zinc-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021710t4" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400036065" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00107t00001; alternateUTRof:Thecc1EG042536t1; inference alignment:Newbler:10:TSA:cgbaP2_g00007t00003; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9456t13" mRNA join(1006341..1006374,1006622..1006737,1008066..1008109, 1008655..1008763,1008849..1008904,1009005..1009408) /locus_tag="TCM_042536" /product="Yippee family zinc-binding protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021710t4" /inference="similar to AA sequence:Phytozome:Glyma11g35110.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc79t6; inference alignment:Newbler:10:TSA:cgbaP2_g00007t00003; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9456t13" CDS join(1006642..1006737,1008066..1008109,1008655..1008763, 1008849..1008904,1009005..1009086) /locus_tag="TCM_042536" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG021710t4" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 5" /protein_id="EOY17828.1" /db_xref="Phytozome:Glyma11g35110.2" /db_xref="TAIR:AT2G40110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LE51" /translation="MGRLFVVNLEGKVYSCKHCKTHLALCEDIVSKSFHCRHGKAYLF SKVVNVSSGEKEDRHMMTGLHTVADIFCVGCGSIVGWKYETAHDKNQKYKEGKSVLER SLVLTEAITGSAMAPMLVGVMQMMFD" CDS join(1006642..1006737,1008066..1008109,1008655..1008763, 1008849..1008904,1008998..1009082) /locus_tag="TCM_042536" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021710t4" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 1" /protein_id="EOY17824.1" /db_xref="Phytozome:PGSC0003DMP400036065" /db_xref="TAIR:AT2G40110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LE51" /translation="MGRLFVVNLEGKVYSCKHCKTHLALCEDIVSKSFHCRHGKAYLF SKVVNVSSGEKEDRHMMTGLHTVADIFCVGCGSIVGWKYETAHDKNQKYKEGKSVLER FKVSGPDGSHYWVSHGAHVGGSDADDV" CDS join(1006642..1006737,1008066..1008109,1008655..1008763, 1008849..1008904,1008998..1009082) /locus_tag="TCM_042536" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021710t4" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 1" /protein_id="EOY17825.1" /db_xref="Phytozome:PGSC0003DMP400036065" /db_xref="TAIR:AT2G40110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LE51" /translation="MGRLFVVNLEGKVYSCKHCKTHLALCEDIVSKSFHCRHGKAYLF SKVVNVSSGEKEDRHMMTGLHTVADIFCVGCGSIVGWKYETAHDKNQKYKEGKSVLER FKVSGPDGSHYWVSHGAHVGGSDADDV" CDS join(1006642..1006737,1008066..1008109,1008655..1008763, 1008849..1008904,1008998..1009082) /locus_tag="TCM_042536" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021710t4" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 1" /protein_id="EOY17826.1" /db_xref="Phytozome:PGSC0003DMP400036065" /db_xref="TAIR:AT2G40110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LE51" /translation="MGRLFVVNLEGKVYSCKHCKTHLALCEDIVSKSFHCRHGKAYLF SKVVNVSSGEKEDRHMMTGLHTVADIFCVGCGSIVGWKYETAHDKNQKYKEGKSVLER FKVSGPDGSHYWVSHGAHVGGSDADDV" CDS join(1006642..1006737,1008066..1008109,1008655..1008763, 1008849..1008904,1008998..1009082) /locus_tag="TCM_042536" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021710t4" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 1" /protein_id="EOY17827.1" /db_xref="Phytozome:PGSC0003DMP400036065" /db_xref="TAIR:AT2G40110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LE51" /translation="MGRLFVVNLEGKVYSCKHCKTHLALCEDIVSKSFHCRHGKAYLF SKVVNVSSGEKEDRHMMTGLHTVADIFCVGCGSIVGWKYETAHDKNQKYKEGKSVLER FKVSGPDGSHYWVSHGAHVGGSDADDV" gene complement(1010039..1014248) /locus_tag="TCM_042538" /note="dbxref CacaoGD:Thecc1EG042538" mRNA complement(join(1010039..1010880,1010981..1011302, 1011687..1012826,1013144..1013294,1013685..1013723, 1013928..1014054,1014178..1014248)) /locus_tag="TCM_042538" /product="Arginine-tRNA protein transferase 1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29669.m000840" /inference="similar to AA sequence:ricco:29669.m000840" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc106t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc106t1" CDS complement(join(1010764..1010880,1010981..1011302, 1011687..1012826,1013144..1013294,1013685..1013723, 1013928..1014045)) /locus_tag="TCM_042538" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29669.m000840" /codon_start=1 /product="Arginine-tRNA protein transferase 1, putative isoform 1" /protein_id="EOY17829.1" /db_xref="TAIR:AT5G05700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCD9" /translation="MRNEASSSNSREESVVVDCGRRRSSCGYCKSSGRTSVSHGLWAH SIAVNDYQDLLDCGWRRSGCFLYKPEMERTCCPSYTIRLKASDFGPSKEQLRVYGRMQ RFLDGTLEVRKPSELAENPNTSTHRGSSVCHAVSSSAANESFACVKKEENKAEEFMHH LSDLIDKVVHTYVGSGEFPFGIQLPKAAVKKVSHAKRKLSVEGTEDLLYSSNIAFQIA ATLRRTCSAEKDVQRLRLSGHSAEENGLCPKSVAEKLACSLNQLANISSLSIRACNGH VNFYSAAKNVSSGGDVQIVAQPEESGSGSKSSCKKKSSEHPPGKKRKLEIRLKKSSFD PEEYALYRRYQIKVHNDTPDRVTESSYRRFLVDTPLLFVSPSADGMVPPCGFGSFHQQ YIIDGKLVAVGVIDILPGCLSSKYLFWDPDYAFLSLGKYSALQEIGWVKENQAYSAGL QYYYMGYYIHSCSKMRYKAAYYPSELLCPLRYRWVPFHIARPLLDKKKYVILSDFASL QDGESTQSCIPESVMELQRDDIGLEDSNDVPIDDDEEMIDIESESSDDELDPEPSGLG STAIEDGNLTNVLVGLRGSRLRYKDLQPAFGPTERNYLEMQLHNYQRVVGLELSERMV YSLG" mRNA complement(join(<1010980..1011302,1011687..1012818, 1013144..1013294,1013685..1013900)) /locus_tag="TCM_042538" /product="Arginine-tRNA protein transferase 1, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29669.m000840" /inference="similar to AA sequence:ricco:29669.m000840" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc111t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc106t1" CDS complement(join(<1010981..1011302,1011687..1012818, 1013144..1013159)) /locus_tag="TCM_042538" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29669.m000840" /codon_start=1 /product="Arginine-tRNA protein transferase 1, putative isoform 3" /protein_id="EOY17831.1" /db_xref="TAIR:AT5G05700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCD9" /translation="MDECRDGTLEVRKPSELAENPNTSTHRGSSVCHAVSSSAANESF ACVKKEENKAEEFMHHLSDLIDKVVHTYVGSGEFPFGIQLPKAAVKKVSHAKRKLSVE GTEDLLYSSNIAFQIAATLRRTCSAEKDVQRLRLSGHSAEENGLCPKSVAEKLACSLN QLANISSLSIRACNGHVNFYSAAKNVSSGGDVQIVAQPEESGSGSKSSCKKKSSEHPP GKKRKLEIRLKKSSFDPEEYALYRRYQIKVHNDTPDRVTESSYRRFLVDTPLLFVSPS ADGMVPPCGFGSFHQQYIIDGKLVAVGVIDILPGCLSSKYLFWDPDYAFLSLGKYSAL QEIGWVKENQAYSAGLQYYYMGYYIHSCSKMRYKAAYYPSELLCPLRYRWVPFHIARP LLDKKKYVILSDFASLQDGESTQSCIPESVMELQRDDIGLEDSNDVPIDDDEEMIDIE SESSDDELDPEPSGLGSTAIEDGNLTNVLVGLRGSRLRYK" mRNA complement(join(<1011205..1011302,1011687..1012818, 1013144..1013294,1013685..1013723,1013928..1014241)) /locus_tag="TCM_042538" /product="Arginine-tRNA protein transferase 1, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29669.m000840" /inference="similar to AA sequence:ricco:29669.m000840" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9079t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc106t1" mRNA complement(join(<1011205..1011302,1011687..1012826, 1013144..1013294,1013685..1014241)) /locus_tag="TCM_042538" /product="Arginine-tRNA protein transferase 1, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29669.m000840" /inference="similar to AA sequence:ricco:29669.m000840" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9079t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc106t1" CDS complement(join(<1011206..1011302,1011687..1012826, 1013144..1013241)) /locus_tag="TCM_042538" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29669.m000840" /codon_start=1 /product="Arginine-tRNA protein transferase 1, putative isoform 4" /protein_id="EOY17832.1" /db_xref="TAIR:AT5G05700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCD9" /translation="MERTCCPSYTIRLKASDFGPSKEQLRVYGRMQRFLDGTLEVRKP SELAENPNTSTHRGSSVCHAVSSSAANESFACVKKEENKAEEFMHHLSDLIDKVVHTY VGSGEFPFGIQLPKAAVKKVSHAKRKLSVEGTEDLLYSSNIAFQIAATLRRTCSAEKD VQRLRLSGHSAEENGLCPKSVAEKLACSLNQLANISSLSIRACNGHVNFYSAAKNVSS GGDVQIVAQPEESGSGSKSSCKKKSSEHPPGKKRKLEIRLKKSSFDPEEYALYRRYQI KVHNDTPDRVTESSYRRFLVDTPLLFVSPSADGMVPPCGFGSFHQQYIIDGKLVAVGV IDILPGCLSSKYLFWDPDYAFLSLGKYSALQEIGWVKENQAYSAGLQYYYMGYYIHSC SKMRYKAAYYPSELLCPLRYRWVPFHIARPLLDKKKYVILSDFASLQDGESTQ" CDS complement(join(<1011206..1011302,1011687..1012818, 1013144..1013159)) /locus_tag="TCM_042538" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29669.m000840" /codon_start=1 /product="Arginine-tRNA protein transferase 1, putative isoform 2" /protein_id="EOY17830.1" /db_xref="TAIR:AT5G05700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCD9" /translation="MDECRDGTLEVRKPSELAENPNTSTHRGSSVCHAVSSSAANESF ACVKKEENKAEEFMHHLSDLIDKVVHTYVGSGEFPFGIQLPKAAVKKVSHAKRKLSVE GTEDLLYSSNIAFQIAATLRRTCSAEKDVQRLRLSGHSAEENGLCPKSVAEKLACSLN QLANISSLSIRACNGHVNFYSAAKNVSSGGDVQIVAQPEESGSGSKSSCKKKSSEHPP GKKRKLEIRLKKSSFDPEEYALYRRYQIKVHNDTPDRVTESSYRRFLVDTPLLFVSPS ADGMVPPCGFGSFHQQYIIDGKLVAVGVIDILPGCLSSKYLFWDPDYAFLSLGKYSAL QEIGWVKENQAYSAGLQYYYMGYYIHSCSKMRYKAAYYPSELLCPLRYRWVPFHIARP LLDKKKYVILSDFASLQDGESTQ" gene 1015941..1021173 /locus_tag="TCM_042539" /note="dbxref CacaoGD:Thecc1EG042539" mRNA join(1015941..1016659,1016761..1016884,1018458..1018572, 1019216..1020298,1020572..1021173) /locus_tag="TCM_042539" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT2G40070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021711t1" /inference="similar to AA sequence:ricco:29669.m000839" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02233t00001" CDS join(1016464..1016659,1016761..1016884,1018458..1018572, 1019216..1020298,1020572..1020829) /locus_tag="TCM_042539" /note="dbxref ricco:29669.m000839; paralog of Thecc1EG021711t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17833.1" /db_xref="TAIR:AT2G40070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HSQ1" /translation="MNRSFRAQQETAMQAAALKQRQQLRASMMKEKEEELALFLEMRK REKEQSNLLLNHSSEDFDAPLGSKPGTSPIFNLSASTATPARKTVAAADDFLNSDNDK NDYDWLLTPPGTPLFPSLEMESQKSVMSQIGTPKPRPTALKSRLANPQPESAARGNLA PKQPALSPGLNSSTTGIRRPSSSGGPGSRPATPTGRHTLTGASKPTRSSTPTTRATLS SSKPSLSATKPVTSAAKPVTSATKPATRPVTSTTKPTVSVTKTASSATKPTVSARSST PTRSTARSSTPTARPSIPSSRPVSRAATPTRRPSTPSSTSNVSVPPIKSSPSVTKPTP AASRNSVPSRGASPTVKSRPWKPSEMPGFSLDAPPNLRTSLPDRPLSATRGRPGAPSS RSSSVEPGPTGRPRRQSCSPSRGRLPNGSMLHVSGSSVPAVSRGYSKVSDNLSPVVIG TKMVERVINMRKLAPPKQDDKHSPHGNLSGKSSSPDSSGFGRTLSKKSLDMAIRHMDI RRSIPNNLRPLMMNIPASSMYSVRSGPTRGRTISVSDSPLATSSNASSELSVNNNGIC LDGIEVEDDIGSERGGPSPASVHAR" gene complement(1022240..1025126) /locus_tag="TCM_042540" /note="dbxref CacaoGD:Thecc1EG042540" mRNA complement(join(1022240..1023119,1024059..1024212, 1024761..1025126)) /locus_tag="TCM_042540" /product="Clathrin light chain protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032845001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021714t1" /inference="similar to AA sequence:ricco:29669.m000838" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3904t1" CDS complement(join(1022766..1023119,1024059..1024212, 1024761..1025053)) /locus_tag="TCM_042540" /note="dbxref ricco:29669.m000838; paralog of Thecc1EG021714t1" /codon_start=1 /product="Clathrin light chain protein" /protein_id="EOY17834.1" /db_xref="TAIR:AT2G40060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHM6" /translation="MSTFPDSFTQLDDDSVESLPHQEHDGSGYEGYDPSQQFDSFAAE SDPAKDSTEDVFESQPYTNGGGFGQHFSGSDGPILPPPSEMEHEEGFALREWRRENAI RLEEKEKREKELLSQIIDEAEQYKVEFYRKREATCESNKANNREREKIFVENQEKFHT EADKHYWKAIAELIPNEVPAIEKRGKKDKEKKPSIVVVQGPKPGKPADLSRMRQILLK LKHNTPPHLKHSPPPAPAPAKDQDSKTSNTPVTAAPPVTSTPKAVVAA" gene complement(1025191..1026218) /locus_tag="TCM_042541" /note="dbxref CacaoGD:Thecc1EG042541" mRNA complement(join(1025191..1025643,1025834..1026218)) /locus_tag="TCM_042541" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026283t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s28780.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.65 coverage" CDS complement(join(1025321..1025643,1025834..1026107)) /locus_tag="TCM_042541" /note="paralog of Thecc1EG026283t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY17835.1" /db_xref="Phytozome:POPTR_0006s28780.1" /db_xref="TAIR:AT3G47580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N676" /translation="MNEADKAPKELKFSQRLNITVDVACALQYLHHHCETSIVHCDLK LSNILLDDEMIGHVGDFGLTNIMSTDLQSYSTSLSSSLKGTIGYVAPGKRPTDEMCKE DLNLHNYVKLPLPERLAEVIDPILHQDIARGGETATSNSSNKNNQRDERFLQCLISIF SIGVTCSAKSPSKQMNMTNVTSELVSIRVKLLPTRLLH" gene 1026461..1035074 /locus_tag="TCM_042542" /note="dbxref CacaoGD:Thecc1EG042542" mRNA join(1026461..1026681,1030231..1030402,1030549..1033649, 1033807..1034231,1034338..1035074) /locus_tag="TCM_042542" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g24620.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024506t1" /inference="similar to AA sequence:ricco:27732.m000285" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc2181t3" CDS join(1030922..1033649,1033807..1034231,1034338..1034346) /locus_tag="TCM_042542" /note="dbxref ricco:27732.m000285; paralog of Thecc1EG024506t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY17836.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SS82" /translation="MPQFICLMGLAGLRMEVPWALIFAVSLLLCCNSQGPYLIGPAKL VVNGNDTDRQALLEFKAKIAGDQLGVMRLWNDSVHFCQWHGVTCSSRHQRVTKLELRS LKLTGIITPYIGNLSFLKVLNLSNNGFSHGVPQEIGRLHRLEELILDKNPLGGQVPSN ISGCSKLKRLYIGHCQLVGEIPGVLGLLYNLKYLGLSNNSLAGSIPPSLGNLSSLEIV YLSINDLSGTIPESLGQLRNLTVLSVPMNALSGIVPSSIFNLSNIRTLDIGSNQFQGS LPTDLGITIPYVETLYVSRNQFSGPFPLSISNASNLINLEFSFNKLVGKLPSFEKLDK LEWFTLTDNLLGSGEVNDLDFVCSLMNATSLVALEINYNNFGGVIPTCISNLSTNLIF FLLDGNEISGTFPVGIGNLINLEMLLAGSNQLSGSIPSTIQRLQKVQWLDLSNNSFSG SIPSSLGNLTMLLQLKLSQNNLKGTIPSSLSKCENLVLLDLSNNNLTGSIPPEVLGLS SLSLNLDLSSNYLTGVLPNEVGNLKNLGQLSVSQNRLSGVLPSSLGVCVRLEKLMVSE NFFHGTIPSSFSSLRGLTVLDISHNNLSGEIPEFFANFTLQYLNLSYNDFEGMVPTGG VFNNASATSIEGNNKLCGGTPEFHLHGCNLKRSTRKSSSRLKLIIAIVFGLLGVTLVL LFLLVFWFRKRRKQPASTSPENSLLRLSYQSILKATDGFSSANLIGVGAYGSVYKGIL QENEIVVAIKVLNLLNHKASRSFMAECEALRKIRHRNLVKVLTACSGVDYHGNDFKVL VYEFMSNGSLEDWLHSSIEIEADSKKSLNLYQRLNVAIDVACALDYLHHHCDQTSIVH CDLKPSNILLDDKMTGHVGDFGLVKFISEDTQNYSASQSSTLGLRGTIGYAPPEYGLG SEVSTYGDVYSYGILLLEIFTGKRPTDEMFKDGLNLHNLVKTALPERAVEMTDPILLQ ERVTGETVANTSDCNESSQSNKILLQCLNSIYEVGLTCSAELPTVRMNMSEVVAELCL IRNKLFPTKQRPERHIQSNHKVF" mobile_element complement(1034894..1036310) /note="source:CACAO_on_SS_E42_scaffold_2 20749 22116" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1038346..1038497) /note="source:CACAO_on_SS_E42_scaffold_2 20600 20751" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1038498..1041435) /note="source:CACAO_M_E85293_F281_scaffold_10 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1041092..1047725 /locus_tag="TCM_047097" /note="dbxref CacaoGD:Thecc1EG047097" mRNA join(1041092..1041437,1042257..1042573,1043858..1046491, 1046716..1047123,1047267..1047725) /locus_tag="TCM_047097" /product="LRR receptor-like serine/threonine-protein kinase, putative" /inference="alignment:exonerate- protein:2:ricco:29685.m000489" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026283t1" /inference="similar to AA sequence:ricco:27732.m000285" /note="quality class is strong-expertchoice, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.23 coverage" mobile_element complement(1041436..1042613) /note="source:CACAO_on_SS_E42_scaffold_2 19410 20604" /mobile_element_type="transposon:TIR/Mutator" CDS join(1042549..1042573,1043858..1046491,1046716..1047123, 1047267..1047412) /locus_tag="TCM_047097" /note="dbxref ricco:27732.m000285; paralog of Thecc1EG026283t1" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase, putative" /protein_id="EOY17837.1" /db_xref="TAIR:AT3G47570.1" /translation="MSVGIYLTGPNLLGSAAPVVTGNETDLRALLEFKAKILNDHFRV MRSWNNTIHFCQWYGVTCGHRHQRVTMLDLGSLKLVGSISPFIGNLSFLRVLNLENNS FNQAIPQEIGRLRRLLALVLRNNSLSGVIPSNLSSCSRLVSVTFGGNLLTGEIPGVLG LLSNLIQFSFARNNLRGDIPSSLGNLSSLQYIALYDNRLSGVIPESLGKLTNIAVFAV SSNEISGVIPASFFNLSSIITLSMNTNQIQGSLPSNIGITMPQIETLSVAENQFTGPF PFSISNASNLVYLNVGVNNFNGPLPSFEKLDKLSRFVIGVNLLGSRTATDLNFVCTLN NASKLEWLEILENNFGGKLPECIGNLSSNLVTLNMEGNRILGRIPAGIENLVNLERLA ASYNQLSGSIPPGIGRLQKLKIFFAAHNSLTGAIPPFFGNLTMLIKFVLADNNLHGNI PSSLAKCENLIALDLSNNSLSGSIPPGVIGLSSLSIALDLSSNYLTGVLPMEVENLKN LGELRVSQNKLSGVLPNNLGGCVRLESLFLDGNLFHGPIPSSLSSLKGLTTLDISGNY LSGEIPEFFVSFGSLKYLNLSFNDFEGMVPIEGVFKDASAAFVEGNNKLCGGIPELHL PKCNLKASNGRSSNSLKLKISIVFAILGVTSVFSFLLIWWFRSRKEKPTAATCAENSL LNLSYQILVRATNGFSSVNLVGSGSFGFVYRGILDESGVVIAVKVLNLLCHGASRSFM AECEALKNIRHRNLVKILTAVSGIDYQGNDFKALIYKFMQNGSLEDWLHPSVAMNEAD ESAKRLTFFQRLNVAVDVGCALEYLHHYYETQIVHCDLKPSNILLDDEMVSHVGDFGL AKFITSDMQNNASSLSSSLGLRGTIGYAPPEYGLGSVVTTYGDVYSYGILLLEMFTGK KPTDEMFKQNLNLHNFVKTALSNQVVVEITDPALLQESFRGETMTNNTRNQSNQRDNY KLLLCLNSIFEIGVACSVDLPTERLHMTDVVAKLCSIRDKLLPTRPLRATVFKVKYFL QLQVLVDSLLPCEVAALLIGIAFTTKLPVHSVLRTGKKRR" gene 1049263..1049997 /locus_tag="TCM_047098" /note="dbxref CacaoGD:Thecc1EG047098" mRNA 1049263..1049997 /locus_tag="TCM_047098" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g17100.1" /inference="similar to AA sequence:Phytozome:Glyma08g17100.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04005t00001" CDS 1049552..1049797 /locus_tag="TCM_047098" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17838.1" /db_xref="Phytozome:Glyma08g17100.1" /db_xref="TAIR:AT2G21820.1" /translation="MSGAQGALPKEAKTATIYESVEGGENRTKMDLRAREDQGGIQVD KLEEKVEDPIGDAGPIFGSAKDDNNNNNQDLGVTGTA" mobile_element complement(1049965..1050676) /note="source:CACAO_Again_on_E167_scaffold_7 1 798" /mobile_element_type="transposon:TIR/hAT" gene complement(1050511..1054925) /locus_tag="TCM_042544" /note="dbxref CacaoGD:Thecc1EG042544" mRNA complement(join(1050511..1052396,1054758..1054925)) /locus_tag="TCM_042544" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400059140" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024383t1" /inference="similar to AA sequence:frave:gene21898" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17205t1" CDS complement(1050945..1052309) /locus_tag="TCM_042544" /note="dbxref frave:gene21898; paralog of Thecc1EG024383t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17839.1" /db_xref="TAIR:AT3G50150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIK8" /translation="MSSDEELLWEVRISMPEIEHSDFIRERRAKLQSALLEAKNDQES GRGAKPLIQRVPAYLIDIKEDFKKYFEPRWVAIGPFHHRNPKFEQGEHTKLKLAALFA EENETTDAVLFNEIKKEIKDLRTCYNPEDIKDYDDDELAWMFFVDGSAVLYAVHYGLL RGEFQKLNIKAELVVLMALDFFLLENQLPYQVLKILIRLAKEPREWEKSITEFIRYSV ITYTRDGKSQNPEEEEEEQEFTHLLERLRTKHLTGEREWSSSSMIGHLLLSGGDNRKH VKTIRRIKDLKEIGISVRPSESENLKNISFYCNLRGTLKMPCILVDDSTATKFLNLLA LEMCRDFENDLAITSFLCFLGSLIDTAEDVKELRLTGILHSYLGSDEEVAELFCRMSR DLVPDLAIYYDVADRIHRYYNSRVMWIYSNYFGSNWSFLAFLGAVIGLSLTVIQTYFS AKTK" gene 1055016..1064219 /locus_tag="TCM_042545" /note="dbxref CacaoGD:Thecc1EG042545" mRNA join(1055016..1057996,1058118..1058441,1059459..1059525, 1060108..1060216,1060305..1060965,1061047..1061499, 1061715..1061878,1061953..1062097,1062214..1062429, 1062954..1063235,1063953..1064219) /locus_tag="TCM_042545" /product="LRR receptor-like serine/threonine-protein kinase, putative" /inference="alignment:exonerate- protein:2:ricco:29841.m002899" /inference="similar to AA sequence:Phytozome:POPTR_0018s02450.1" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(1055215..1057996,1058118..1058441,1059459..1059525, 1060108..1060216,1060305..1060965,1061047..1061499, 1061715..1061878,1061953..1062097,1062214..1062429, 1062954..1063156) /locus_tag="TCM_042545" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase, putative" /protein_id="EOY17840.1" /db_xref="Phytozome:POPTR_0018s02450.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IL48" /translation="MNQPYKYVTKQYRKSPKRIAERQVLLCAMAFPFVYCQLAGFYFS IVLLHATIAAAATANFVIRTNPGNETDRIALLAFKQKISQDPDGVMSSWNLSKDFCEW EGITCSRRHRRVTMLNLRSRRLVGSLSPYIGNLSFLREIRLENNTLHGEIPEEVGRLF RLRFLYLGNNSLVGQIPVNLSHCSKLSFLHLGRNKLVGKFPLEFASLSNLKELAIHFN HLTGGIPPFLANISSLEALSASYNAFGGNIPDSLGQLRYLTSLGLGGNNISGTIPPSL YNLSSLAIFSLSENRLRGRLPSNLGLALPNLRRFQISVNFFSGSIPVSLSNASKLEFI EMVGNNLSGKLSVDFGGMQQLSYLNLGRNDLGSGEPDEMRFIDSLANCSNLQDLDLSV NRFQGVLPHSSGNLSTQLLRLLLDSNQLYGPIPSGVGNLVNLYLFAIGWNQFTGKIPA EIGKLHNLQWMDLHRNKLSGEIPPTLGNLSSLLELHLLNNNLQGTIPTSLGKLRNLAA LDLSRNDLWGTIPETLFHKTPRMISLNLSQNHLVGKIPASIADMKNLMRLDVSRNNLS GEIPLELSNCGNLEILYVEGNFFQGSIPPALSSLRAIRQVDLARNNLSGKIPKFLESL ALRYLNLSFNDFEGEVPVKGVFTNASAMSVVGNTRLCGGIHELQLPKCNINNSSKKQK DSLAFKVIISISCAFLGIAMVAFLMFCWFKRRREKQSPSPMLRKTLLKLSYEKLLKAT DGFSSTNLIGLGSFGSVYKGVLDQDGLTIAVKVLNLQRQGGSKSFMAECKALTNIRHR NLVKIITSCSSVDFQGNDFKALVHEFMPNGSLENWLHPASEGEQAEIPYLSLRQRIEI GIDVASALDYLHHHCQQPILHCDLKPSNILLDSNMTAHVGDFGLVKFLQEHSNPTQSS SLGIRGTIGYAAPEYGLGSEVSADGDVYSYGILLLEMMTGKKPTDEMFDGGLNLHKFA RMALANQVMDIVDPTLLNNGGELAAENNRLRHSNSDRIKECLISVIGIGVACSMESPQ ERMEISLADTSLPEYSDPIVFSQANLRRVLHDSRRRQRVTALDLQSRKLQGKLSPSVA NLTFLQKTHLEGKFQPASAIVQNSRVIHLNFNKLTGRIPEELSNLPKVIALHIAANNL TGGITPFLGNLSTLLNLSLARNNLGGSIPDDLGRLASLNFLQAGSNNLSGIIPATILN LSVISIFAAADNKLTGSFPQSLGTNFPNLQIFAVGVNRFTGPIPPTLSNATGLLQIDF PDNYFVGRMPTDLGSIKNLQRLNVGRNRLGSREADDLSFLNSLINCSKLQLLGNNQIY GSIHSGIENLVKLHSLYIDHNMISGGIPIEIGKLSSLRQLYMNGNRLSRNIPHSIGNM TELFELRLDGNNLEGTIPSTLWNCVHLQVLNLSQNNLKGTIPKEVIGLSSLSKSVNLA RSSLSGALPPEVGNLKNLKGFDVSENRLSGEVPRQGVFTNISSSSLLGNSKPCGGIFS LQLPPCPKQKSGKEGKSFTLKLAIITKPSPTSHSDDWHSDITYKDLHKATDGFSPANL IGVGSFGSVFKGMLNDGSCSSVDFRGNNLQFIPNGSLGHWLHLKTNEHHRQLKLNIFQ RLNIAIDVASAPEYLHHHCHTPIIHCDLKPKYAVGGAVSTYGDVYSYGILLLEMFTGR RPTDDIFKDGSNLHNFAKKAIPEQVMEILDPTMLLCLFS" mobile_element complement(1063134..1063394) /note="source:CACAO_M_S_E66514_F257_scaffold_5 1 258" /mobile_element_type="retrotransposon:LTR/Copia" gene 1064394..1065055 /locus_tag="TCM_042546" /note="dbxref CacaoGD:Thecc1EG042546" mRNA 1064394..1065055 /locus_tag="TCM_042546" /product="Pleckstrin (PH) domain superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041643t1" /inference="similar to AA sequence:frave:gene20940" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00973t00001_C2" CDS 1064495..1064926 /locus_tag="TCM_042546" /note="dbxref frave:gene20940; paralog of Thecc1EG041643t1" /codon_start=1 /product="Pleckstrin (PH) domain superfamily protein" /protein_id="EOY17841.1" /db_xref="TAIR:AT5G05710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFK5" /translation="MASLWRAATALTEKPNDYDGVEFWSNPERTGWLTKQGEYIKTWR RRWFVLKQGKLFWFKESTITRGSRPRGVIPVASCLTVKGAEDILNKQYAFELSTRNET MYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIVDYDSKR" gene complement(1065642..1076816) /locus_tag="TCM_042547" /note="dbxref CacaoGD:Thecc1EG042547" mRNA complement(join(1065642..1067000,1067088..1069781, 1076657..1076816)) /locus_tag="TCM_042547" /product="Serine-threonine protein kinase, plant-type, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042548t1" /inference="similar to AA sequence:ricco:29669.m000831" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc3380t1" CDS complement(join(1066621..1067000,1067088..1069776)) /locus_tag="TCM_042547" /note="dbxref ricco:29669.m000831; paralog of Thecc1EG042548t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY17842.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SLM0" /translation="MGNSCLENFCCKNNFLLCTVILSLVSGSLKFALALGNETDRLAL LSLKDQLVGGSPDALNSWNSSLHFCEWQGVICGRRHQRVIALNLSGLRLSGSISPSIG NLTFLRGINLSWNRLQGNIPKELGRLRRLRALYLYINRLQGQIPVEITNCSNLQIIIL NTNRLTGGVPSWFGLMPWLVRLSLAVNRFTGSIPAALGNISSLNHITLAINHLEGRIP EALSRASNLKFLLLGKNNLSGTIPPSLYNLSSMEFMDMHMNKLSGNLVPEIDIAFPNL QVFVIGDNRFTGTIPRSIANISSLQQFDIYSNGFSGSVPDNLGNLNNLQLLVLDYNNL GSGKAGDLDFISSLSNCSLLETLVIHKNRFGGRLPDSIANLSIRLRVLYMGENQITGS LPEGIGNLVNLNDINMGNLFLTGNIPVSMGKLQNLEGLSLPSNYLSGKIPSSVGNLSR LSKLDLSNNNFEGRILQSLANCDRMEQLDLSQNKLNGSIPNQLFGAFKSLFYLNLSHN SFTGLLPLDLGNLKNLVQLFLDNNKFFGEIPSNLGQSSGLRILYMQGNSFQGSIPTSF GSLRSLEILDFSSNNLSGNIPLELETLRFLVSLNLSFNQLEGEVPKQGVFKNVSGFSF MGNKKLCGGILQLELPKCFDKEPKKRANVLSTKVITMIILSVLIASFLAVFLVNLCWK RRSRMELNPVALLGDGYLRVSYKELLQATGSFASSNLIGGGAFGSVYKGVLHQQEKPV AVKVLNLQNHRVAQSFMAECKVLRKVRHRNIVKVITSCSSIDYRGNDFKALVFEFMPN GSLESWLHEHSESKYLNFVQRLEIAIDVANAIDYLQHDCETMIVHRDLKPTNVLLDDE MVAHVSDFGLSRLVSSHSRNMGMGDTNSSLIKGTIGYVAPEYGMGGVASPEGDIYSYG ILLLEMITGRRPTDGMFHNGLSLHSFCKMALPEQFKEIIDFRLLEQMGEDMERISRQQ EAKILECLVSFTKIGVACSAEVPAERMRIKDAITGLEATKARLIHRTGHM" mobile_element 1070405..1071206 /note="source:CACAO_Again_on_S_E38_scaffold_1 4 788" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(1071287..1072024) /note="source:CACAO_Again_on_S_E308_scaffold_10 1 738" /mobile_element_type="transposon:TIR/hAT" mobile_element 1074174..1076803 /note="source:CACAO_on_SS_E42_scaffold_2 19405 22010" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1076804..1076935) /note="source:INTACT897F_F376_scaffold_6-int 6788 6923" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1076864..1082466) /locus_tag="TCM_042548" /note="dbxref CacaoGD:Thecc1EG042548" mRNA complement(join(1076864..1077908,1078151..1081010, 1082215..1082466)) /locus_tag="TCM_042548" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040263.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042561t1" /inference="similar to AA sequence:ricco:29669.m000831" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.11 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc9340t6" CDS complement(join(1077511..1077908,1078151..1080848)) /locus_tag="TCM_042548" /note="dbxref ricco:29669.m000831; paralog of Thecc1EG042561t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY17843.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SLM0" /translation="MGNSCLGNISILHINLFVCFVIVLSLFLPGSLKFALALGNETDR IALLSIKDQLVGSYPGALVSWNASLHFCEWQGVTCGRRHQRVTALELPGLKLAGSLSP SIGNLTFLRKFNLSANRLHGNIPKEVGYLRRLRVLHLSQNNLHGEIPVELANCSKLQG IVLLYNNLTGEVPFQLGDLSKLIRLSLGANNLVGSIPSSLGNLSSLQDLSLSSNHLKG NIPDALGGAVNLRYLFLASNSLNGTLPLSIHNLSSLEMIEMATNNFSGSLAAVIGLPF PNLRYFSIGENQLIGTIPKSISNMSNLEIFDIAMNGISGSVPNDLGNLKNFQELIIGH NFFGNGKTGDLDFLSSLSNCTQLQILELEGNRLGGLLPKSIGNLSIQLNMIFMGFNQI SGNIPEGIGNLFSLTLFHMPRNALSGTLPTSIGKLQNLERLFLSSNNFSGEIPSIIGN LSLLFELQLHNNNFEGRIPLALRNCKKMQKLFLSGNKLSGNVPDHLFGAFTSLILVYI SSNSLIGPLPSDLGNLTNLVELFISENKFSGEIPKSLGECSGLRTLDMARNFFQGSIP LSFGSLKSLEILNLSHNSLSGTIPHELEKLPFLSNLNLSFNHLEGEVPKGGAFNKSSG FSIGGNKNLCGGIPEIKLPKCINQEPRKKGNALSTKAIIVMILGILIAFILVVLLFVR CCKFRSGKKLIPATLFGDGYLRVSYKELLQATGGFASSNLIGMGSFGSVYKGVLNQQE KPVAVKVLNLQNRGAAKSFTTECKALRKVRHRNLLKIITSCSSIDYQGNDFKALVFEF IPNGSLDSWLHEQHESRYLNFVQRLDIAIDVANAIDYLHHNCEAVIVHCDLKPTNVLL DDDMVAHVSDFGLAKLLSSDTDNMGNNQTGSSMMKGTIGYVPPEYGMGGAVSPEGDIY SYGILLLEMITGRRPTDGMFHGGLSLHNFCNMALPDRLKEILDFRLLEQISENKERLT NLPNMEREMLESLVSFTKIGVACSAEAPGERMGIKDAITQLPAIKAGLLRTGIHGRNR R" gene complement(1082625..1086336) /locus_tag="TCM_042549" /note="dbxref CacaoGD:Thecc1EG042549" mRNA complement(join(1082625..1083226,1083448..1086336)) /locus_tag="TCM_042549" /product="Serine-threonine protein kinase, plant-type, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042556t1" /inference="similar to AA sequence:ricco:29669.m000831" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS complement(join(1082919..1083226,1083448..1086145)) /locus_tag="TCM_042549" /note="dbxref ricco:29669.m000831; paralog of Thecc1EG042556t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY17844.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SLM0" /translation="MDKSCLGNICILEIILLVGFVVILSLLVPGSLKFASALGNENDK IALLFIKDRLVGAYPGALDSWNASLHFCEWQGVTCGRRHQRVTALDLDGLKLRGFLSP SIGNLTFLKRVNLSNNRLQGYIPKEVGYLRRLRVFELFRNNLHGRILVELANCSNLST IRLSRNNLIGEVPFQLGDLPKLIILSLGVNNLIGGIPSSLGNLSSLWVLSLPYNHLEG NIPDALGGAFNLRNLFLAVNSLTGSLPLSIHNLSFLEMIDLGLKNFSGSLANIIGIPF PNLRHFNIGQNQLIGSIPKSISNMSNLELFHINVKGISGSVPKYLGNLKNLEWFNIGD NYFGNGKARDLDFLSCLSNCSLLQFLNLQSNRLGGLLPPSIGNLSIQLSILHMGWNSI SGNIPDEIGNLVGLNLLDMRRTVPTGTLQTSIGKLQNLERLLIGWNNFFGEIPSFIGN FSRLFDLQFYNNNFEGRIPLALRNCKNMQNLDIVENKLSASIPDQLFGAFTNLIVVNM SYNSLTGPLPSEFGNLKNLVKLYVYENKLSGEISKTLGECSKLAVLDMAGNFFQGSIP LSFGSLRALELLNLSHNNLSCTIRHELEKLPFLNCLNLSFNHFEGEVPKRAVFNKSNG FSIVGNKNLCGGIPEIKLPKCINPKPRKKQNALSTKAIIFLILGILIASILVVLLFIC CCRKRSGKKFIPAALLGDSYLLVSYKELLQATGGFSSSNLIGVGSFGSVYKGVLHRQE KPVAVKVLNLQNSGAAKSFTVECKALRKVRHWNLLKIITSCSSIDYQGNDFKALVFEF IPNGGLDSWLHEQHESRYLNFVQRLDIAIDVANAIDNLHHNCEAVIVHCDLKPSNVLL DDGMVAHVTDFGLAKLLSSDTDTMGNDQASSSVMKGTIGYVPSEYGMGGAVSPEGDIY SYGILLLEMITGRRPTDGMFHGGLNLHNFCNMALPERLKEILDSRLLEQICENNERSR SLPNMEAKMLESLVSFAKEGVACSAEAPG" mobile_element complement(1086425..1090202) /note="source:INTACT1811F_F10_scaffold_10-int 1 3778" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1091710..1101689) /note="source:INTACT20_F8_scaffold_7-int 1 9996" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1106745..1112228) /locus_tag="TCM_042555" /note="dbxref CacaoGD:Thecc1EG042555" mRNA complement(join(1106745..1107346,1107571..1109384, 1109459..1109852,1109939..1110141,1110212..1110302, 1111066..1111131,1111231..1111379,1111900..1112228)) /locus_tag="TCM_042555" /product="Serine-threonine protein kinase, plant-type, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042549t1" /inference="similar to AA sequence:ricco:29669.m000831" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS complement(join(1106949..1107346,1107571..1109384, 1109459..1109852,1109939..1110141,1110212..1110302, 1111066..1111131,1111231..1111379,1111900..1111967)) /locus_tag="TCM_042555" /note="dbxref ricco:29669.m000831; paralog of Thecc1EG042549t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY17845.1" /db_xref="TAIR:AT3G47090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SLM0" /translation="MDTNLLAAQFTSSPKLMFFKENGYRILVLEMITGRRPADDMFHG GLRLHNFCQRTLPEQLKDILHFRLLEEIEAPVKERGSKIMLPQNRMQLRQVVRELGGH GKLNLLVPQFNSSPQLIFFKENGLLVPRSLKFASAMGNETDRIALLSIKDQLVSAYPG ALDSWNASLHFCLWQGVTCGHRYQRVTGLDLDGNVPKEVGYLRRLRVFELFQNNLHGR IPVELANCLNLTRIDLTYNNLTGKVPFQLGHLPKLNILYLGANKLVGGIPSSLGNISS LWKLSLAHNHLEGNIPDALVLFLCQFTIFLPWKCLTWLSTISQGVLQLSISNMSNLET LDLTYNSFSGSVPKDLGNLKNLEWFHIGDNYYGNGKAGDFDFLSSLSNCSLLQFLNIQ SNRLGGLLPPSIGNLSIQFSILYIGWNSISGNIPDEIGNLMGLNLLDMRRTALTGSLP TSIGKLQNLERLLIGWNNFFDEIPSFIGNLSRLFDLLLYSNNFEGRIPLVLRNRKNMQ NLDITENKLSRSIPDQLFGALTNLIVVNMSYNSLTGPLPSDFGNLKNLVELYVYEIKL SGEIPKTLGECSELAVLDMAGNFFQGSILLSFGSLRALEFLNLSHNNLSGTIPHELEK LPFLSSLNLSFNHFEGEVPKRGVFNKSNGFSIVGNKNLCGGIPEIKLLKCINPKPREK QNALSTKAIIILILGILVASILVVFLFICCCRKRSGKNFVPAALLGDSYLRVSYKELL QATGGFSSSNLIGVGSFGSVYKGVLHRQEKPVAVKVLNLQNRGAAKSSTVECKALRKV RHRNLLKIITSCSSIDYQGNDFKALVFEFIPKGSLDSWLHEQHESRYLNFVQRLDIAI DVANAIDYLHHNCEVVIVHCDLKPSNVLLDDDMVAHVTDFGLAKLLSTDTDTMGNDRA SSSTMKGTIGYVPSEYGMGGAVSPEGDIYSYGILLLEMITGRRPTDGMFHGGLNLHNF CNMALPERLKEILDSRLLEQICENNERSRSQPNMEGKMLESLVSFTKVGVACSAGASG ERMGIKDAITELLATKARLLRTGIHRRDRR" gene complement(1114895..1119050) /locus_tag="TCM_042556" /note="dbxref CacaoGD:Thecc1EG042556" mRNA complement(join(1114895..1115676,1116183..1119050)) /locus_tag="TCM_042556" /product="Serine-threonine protein kinase, plant-type, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042561t1" /inference="similar to AA sequence:ricco:29669.m000831" /note="quality class is strong, express is weak, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02587t00002" CDS complement(join(1115294..1115676,1116183..1118838)) /locus_tag="TCM_042556" /note="dbxref ricco:29669.m000831; paralog of Thecc1EG042561t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY17846.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SLM0" /translation="MVNLLVSFVIILSLLVAGSLKFAFALGNETDRIALLSIKDQLVG AGALDSWNASLHFCEWQGVTCGRHHQRVTALDLDGLKLAGSLSPSIGNLTFLRKLNLS DNSLRGNIPKEVGYLRRLRVLHLFQNNLHGKIPVELANCSKLQAIALFYNDLTGEVPF QLGDLPNVIMLSLGANNLVGGIPSSLGNLSSLWKLSLAHNHLEGNIPDALGRALNLRI LFLGVNNLAGSFPLLVHNLSSLEKIDLAVNNFSGSLAAMTGISFPNLREFLVGFNQLI GTIPRSISNMSNLEALDIIDNSFSGSVPQDLGNLKNLKWFNIGDNNFGNGKTRDLDFL SSLSNCSLLQFLNIQNNRFVGLLPQSIGNLSIQLSMLFMGWNSIYGNIPDEIGNLVGL TLLDMRSTALAGTLPTSIGKLQNLGRLFIGWNNFLGEIPSFIGNLSHLFDFLLNNNNF EGRIPVALRNCKNMQFLDIAKNKLSGSIPDQLFNAFTNLVLVNMSYNSLTGPLPSDFG NLKNLVELYVYENKLSGEIPKTLGECSELTILDMAGNFFQGSIPSSFGSLRSLELLNL SHNNLSGTIPHELEKLPFLISLNLSFNHFKGEVPKRGVFNQSSAFSIVGNKNLCGGIL EIKLPKCISQEPRKKGNALSTKAIIILILGILIASILVVLLFICCWGQRSGKKLILAG LLGDRYLRVSYKELLQATGGFASSNLIGMGSFGSVYKGVLHQQEKPVAVKVLNLQNRG AAKSFTAECKALRKVRHRNLLKIITSCSSIDYQGNDFKALVFEFIPNGSLDSWLHEQH ESRYLNFVQRLDIAIDVANATDYLHHNCEVVIVHCDLKPSNVLLDDDMVAHVTDFGLS KLLSSDTDTMGNDQTGSSMMKGTIGYVPPEYGTGGTVSPEGDIYSYGILLLEMITRRR PTDGMFHGGLSLHNFCNMALPDRLKEILDFHLLAQLSENNERLRSQPNREREMLESLV SFTKIGVACSAEAPGERMGIKDAITQLLAIKARLLRTGIH" mobile_element 1121885..1121963 /note="source:CACAO_on_SS_E42_scaffold_2 19410 19481" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1122377..1122574) /note="source:INTACT897F_F376_scaffold_6-int 898 1410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1122575..1123156 /note="source:CACAO_on_SS_E42_scaffold_2 20010 20607" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1123157..1123299) /note="source:INTACT897F_F376_scaffold_6-int 521 897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1126588..1131169) /note="source:CACAO_M_E85288_F112_scaffold_10 1 4547" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1131073..1140927) /locus_tag="TCM_042558" /note="dbxref CacaoGD:Thecc1EG042558" mRNA complement(join(1131073..1131448,1135903..1136313, 1136878..1138551,1139490..1139559,1140241..1140927)) /locus_tag="TCM_042558" /product="LRR receptor-like serine/threonine-protein kinase, putative" /inference="alignment:exonerate- protein:2:ricco:29841.m002899.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042561t1" /inference="similar to AA sequence:Phytozome:Glyma14g06580.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" mobile_element complement(1132279..1133770) /note="source:CACAO_M_E85287_F215_scaffold_10 1 1492" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(1135916..1136313,1136878..1138551, 1139490..1139559,1140241..1140822)) /locus_tag="TCM_042558" /note="paralog of Thecc1EG042561t1" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase, putative" /protein_id="EOY17847.1" /db_xref="Phytozome:Glyma14g06580.1" /db_xref="TAIR:AT3G47090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SLM0" /translation="MDKSCLGNICILQINLLVGFVVILSLLLPGSLKFASALGNETDR IALLSIKDQLVGAYPGALDSWNASLHFCEWQGVTCGRRHQRVTALELSGLKLAGSLSP SIGNLTFLRRLNLSDNRLKGNIPKEVGYLRRLLFFELSSNNLHGKLPVELANCSNLLT IDLSSNNLTGEVLFQLGDLSKLIRLSLDINNLVGLFCQKPGHMHVTGFPQGVLEGRNG SLKFASALGNETDRIALLSIKDQLVGAYPGALDSWNASLHFCEWQGVTCGRHHQRVTA LELPGLKLAGSLSPSIGNLTFLRRLNLSDNRLKGNIPKEVGYLRRLLFFELSSNNLHG KLPVELANCSNLLTIDLSSNNLTSEVLFQLGDLSKLIRLSLDINNLVGVIPSSLGNLS SLSRLSLAYNHLEGNIPDALGRALNLRILFLGVNSLTGTVPLSIHNLSSLEMIDLAMN NLTGSLAVVMGGMSFPNLRVFSIAGNQLIGTIPRSISNMSKLEIFSIVLNGISGSVPN DVGNLKNLQQFRIGGNYFGNGKAGDLDFLSSLSNCSRLKILALDENRLGGLLPESIGN LSIQLNKLSLAWNLISGNIPDGIGNLVNLILLDMRRNALTGTLPTSIGKLKNLETLLL GWNNFSGEIPSFIGNLSRLFELILHDNIFEGRIPLALRNCKRIQNLDLGANKLSGSIP EQLLGAFTGLIWVNMSYNSLTGLLPSDLGNLKNLIGLYVYENKLFGEIPKTLGECSGL RSLDMAGNFFQGGIPLSFGSLKSLEFLDLSRNNLSEYGMSGAVSPEGDIYSYGILLSE MITGRRPTDGIFHGGLSLHNFCKMALPERLKEILDFHLLNQISENNDRLRSQLNIEGE VLEGLVSFTKIGVACSAEAPGERMGIKDAITQLLAIKARLLRTGIHTRDRR" mobile_element complement(1141689..1142071) /note="source:CACAO_on_SS_E42_scaffold_2 21789 22118" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1142366..1143565) /note="source:CACAO_on_SS_E42_scaffold_2 20297 21491" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1143928..1144432 /note="source:INTACT897F_F376_scaffold_6-int 1340 1843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1146019..1147179) /note="source:INTACT1809F_F10_scaffold_10-int 2639 3799" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1147280..1148699) /note="source:INTACT1809F_F10_scaffold_10-int 1219 2638" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1148800..1150017) /note="source:INTACT1809F_F10_scaffold_10-int 1 1218" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1149696..1159085) /locus_tag="TCM_042561" /note="dbxref CacaoGD:Thecc1EG042561" mRNA complement(join(1149696..1150661,1151167..1153828, 1159073..1159085)) /locus_tag="TCM_042561" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:ricco:29841.m002899.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042548t1" /inference="similar to AA sequence:ricco:29669.m000831" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(1150264..1150661,1151167..1153828)) /locus_tag="TCM_042561" /note="dbxref ricco:29669.m000831; paralog of Thecc1EG042548t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY17848.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SLM0" /translation="MVKLLVCFVIILSLLAPGSLKFTLALGNETDRIALLSVKDQLVG AGAGPLHSWNASLHFCEWQGVTCGRRHQRVTALDLDGLKLAGSLSPSIGNLTFLRRLN LSDNRLQGNIPKEVGYLRRLRVFDLFQNNLHGRIPVELANCSNLQRIHITDNNLTGEV PFELGDLSKLIRLSLAANNLVGGIASSLGNLSSLWHLSVSYNHLEGNIPDALAKALNL RNLFLGGNNLAGTLPLSFHNLSSLEMINLALNNFSGSLAAVIGILSPNLRYFTSGGNH LIGTIPMSISNLSNLEMFDISVNGINGSVPNDLGNLKNLQEFKIGGNYFGNGKIGDLD FLSSLSNCSLLKYLDLELNQLGGLLPESIGNLSIQLNMLYIGWNQISGDIPEGIGNLV NLIVMDMRRNALVGTLPTSIGKLPNLERLLLGWNNFLGEIPSFIGNLSRLFDLVLFGN NFVGRIPLALRNCKNMQSLFLSENKLTGSIPDQLFSAFKSLIVVNISYNSLTGPLPSD FGNLEYLVGLFVYENKLSGEIPKTLGECSGLRSLDMAGNFFQGSIPFSFGSLKSLEIL NLSRNNLSGTIPHELEKLPFLSSLNLSFNHLEGEVPKGGVFNKSSGFLVVGNKNLCGG IPEIKLPKCFNQEPRNKGTALSIKAIIGMILGILIASILVVLLFVRCCRHRSGKKLIP VALFGDGYLRVSYKELLQATGGFASSNSIGVGSFGSVYKGVLHQQEKPVAVKVLNLQN RGAAKSFTAECKALRKVRHRNLLKIITSCSSIDYQGNDFKALVFEFIPNGSLDSWLHE QHESRYLNFVQRLDIAIDVANAIEYLHHNCEAVIVHCDLKPTNVLLDDDMVAHVSDFG LAKLLSSDTNNMGNDQTGSSMMKGTIGYVPPEYGMGGTVSPEGDIYSYGILLLEMITG RRPADGMFYGGLSLHNFCKMALPERLKEILDFRLLAQLSENNEGSRSQPNREREMLES LVSFTKIGVACSTEAPGERMGIKDSITQLLAIKATLLRTGIHRRERR" mobile_element complement(1156004..1156518) /note="source:CACAO_M_E58324_F9_scaffold_9 9706 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1156519..1159133) /note="source:CACAO_M_E1604_F144_scaffold_1 1 2625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1159134..1161230) /note="source:CACAO_M_E58324_F9_scaffold_9 7669 9710" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1159182..1167476 /locus_tag="TCM_042562" /note="dbxref CacaoGD:Thecc1EG042562" mRNA join(1159182..1159190,1162606..1164389,1164534..1165323, 1165426..1167476) /locus_tag="TCM_042562" /product="Copia-like retrotransposable element, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026511t1" /inference="similar to AA sequence:frave:gene24361" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" mobile_element complement(1162641..1167388) /note="source:INTACT52_F23_scaffold_10-int 1 4748" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(1163154..1164389,1164534..1165323,1165426..1166672) /locus_tag="TCM_042562" /note="dbxref frave:gene24361; paralog of Thecc1EG026511t1" /codon_start=1 /product="Copia-like retrotransposable element, putative" /protein_id="EOY17849.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LH44" /translation="MKTFLRDVNLWNAVEFETELLVLKENASQAQVKQYEEDIAKRYR ALSFIHSAVSESVFNKIMGCETANKACSKLEKEFLGSARSKQVRLQNLRRKYELLIMK ENQTIDEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERFDPTITSLEQVKDITE LSILDSVSALEADEQRKAARRDERVDHALAARAKGKAPADPSFKKNSNENKEKDKAGT AAGRSQNKRGKFSVCPYCKKRNHSEAYCWFRLGVKCNACKQLGHVEKVCKNKAEAANK KPQVTKQVEKAEVAEEVLFMTIENSNSADNNHWLLDSACSNHMTSKAELFSELDTDHC SSVKIGNGLILDAVGKGTVAIQTASGTRYVLNVLLVSEITHNLLSVGQLVDEDYMLVF KNNACTVYEPSGVYIMSVPMLNLPKLHGDSPICSSCQYGKLTRRSFPKASLNRAKHRL ELVHSDVAGPMSEPSLNGSKYFVIFIDDMSRMTWIYFIQHKSEVFSVFQKFKAKVENE SGCRIKKLRTDNGGEYTSSEFISYLENEGIHHQLTAPYCPEQNGVSERKNRTIIEMSR CFLFKKKLPKSFWAESANTAVYLQNILITQAVNNETPYEAWYSTRPSVDHLRIFASIC YLHVPEELRDKLQPKAKLGVFIGYSQQSKAYRIYQIESGKVSVSIHVTFDEEQIVDEP LVRGTRPLQEIYESCNVAAFEPATPEEAVLSPEWKEAMKEEMKMINLNKTWSLVDRPK HHHVLGVKWVFRMKLNSDGSLNKHKARLVVKGFAQLPGVDYHETFAPVARMDTIRLLL ALSAKFKWKMFHLDIKSAFLNGDLQEEIFIEQPYGFESEPNRDKVYKLHKAPYGLKQA PRAWYCKFDDYLKGQGFHKSSNEATLYIQKADDQNPLIISLYVDDMLVTGGDDQRISK LKLEMQSRFRMTDLGQMSYFVGLQILQGNSRIFICQSNYIGEVLDKFKMTDCKTVATP LIPHEKLSVDKGSALENPSTFRSLIGSLLYICASRPNLMFAASYLSRFMQVPTTEHFP AAKRVLRYLKGTANFGLQFTYIDESSVELVGFSDSDWAGCVDDCKSTSGYVFTLGNGV FC" gene complement(1167481..1171157) /locus_tag="TCM_042563" /note="dbxref CacaoGD:Thecc1EG042563" mRNA complement(join(1167481..1167769,1168010..1168113, 1168243..1168498,1168756..1169571,1169719..1170078, 1170155..1170357,1170442..1171157)) /locus_tag="TCM_042563" /product="Serine-threonine protein kinase, plant-type" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042548t1" /inference="similar to AA sequence:Phytozome:Glyma03g23780.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS complement(join(1167546..1167769,1168010..1168113, 1168243..1168498,1168756..1169571,1169719..1170078, 1170155..1170357,1170442..1170770)) /locus_tag="TCM_042563" /note="paralog of Thecc1EG042548t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type" /protein_id="EOY17850.1" /db_xref="Phytozome:Glyma03g23780.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SLM0" /translation="MFHSRVLPLLMHGMGGCFLVAKLCPFGEDSESQCYSFQPSDLPC VPLMDEVSSFPAGANESFSVILPRPGQPILKPFLDVREMGGHGQQLNQLVAQFNSSPK IIFFEENGVPEICIGLGERKTDRIALLSIKDQLVGAYPGALDSWNASLHFCEWQGVTC GSRHQRVTALDLDGLKLGNIPKEVGYLRRLRVFELFRNNLHGTIPVELANCSNLLTIR LSHNNLPGEVPFQLGDLLKLIVLSLGANNLIGCIPSSLGNLSSLRDLSLSYNHLEGNI PDALGGAINLRNLLLAANSLTGTIPRSISNRSNLEIFDIGWNGIGGSVPDNLGNLKNL QQFMIAGNYLGNGNTGDLDFLSSLSNCSLLQILDLEANRLGGPLPESIGNLSIQLNML FMGWNQISGNIPEGIGNLVSLTLLHLPRNALAGTLPTSLGKLRNLERLFLGLNNFSGE IPSFIGNLSHSFELQLHNNSFEKKIPLVLRNCKSMQILFLSGNTLGGSIPDQLFGAFT SLTQVDMSSSSVTGPLPSDFDNLKNLEELFIYGNKLSDEIPEILGQCFGLRSLDMVGN FFREAKEKLVAVKVLNLQNRGAAKSFVAECKALGKVRHRNVLKIITSCSSIDYQGKDF KALVFEFIPNWSLDSWLHEQHESRYLNFVQSDFGLAKLLSSDTNNMGNDQTGSSMMKG TIGYIPPEYGMGGAVSPEGDIYGYGTLLLEMITGRRPTDGMFHGGLSLHNFCKMALPE RLTEILDFRLLEQISENNERLTS" gene complement(1171308..1183995) /locus_tag="TCM_042564" /note="dbxref CacaoGD:Thecc1EG042564" mRNA complement(join(1171308..1171918,1172137..1172223, 1172577..1172657,1172892..1173044,1173168..1173224, 1173321..1173567,1173662..1173777,1173905..1174056, 1174781..1174970,1175078..1175262,1175772..1176481, 1176906..1177078,1183424..1183995)) /locus_tag="TCM_042564" /product="Anthranilate synthase alpha subunit 1" /inference="alignment:exonerate- protein:2:ricco:29669.m000830" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041646t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19790.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc608t1" CDS complement(join(1171595..1171918,1172137..1172223, 1172577..1172657,1172892..1173044,1173168..1173224, 1173321..1173567,1173662..1173777,1173905..1174056, 1174781..1174970,1175078..1175262,1175772..1176111)) /locus_tag="TCM_042564" /note="paralog of Thecc1EG041646t1" /codon_start=1 /product="Anthranilate synthase alpha subunit 1" /protein_id="EOY17851.1" /db_xref="Phytozome:POPTR_0010s19790.1" /db_xref="TAIR:AT5G05730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K0T5" /translation="MLFSSLTCTCNGLYNSLSNACLCTTHLPLFFAFSHRNLRENPGR LPATEELLVSVRRARHFKPMAMQSSLAFSHRLVPSSNRLSQVPVIRMPPAPTCFRTSL KCRSSLSSSSLVADETKFAEAAKKGNLVPLYRCIFSDQLTPVLAYRCLVKEDDRDAPS FLFESVEPGSRVTSVGRYSVVGAQPTMEIVAKENKVMVMDHEEGCLTEDVVEDPMLIP MRISENWKPQLIDDLPDAFCGGWIGYFSYDTVRYVEKKKLPFSKAPQDDRNLPDIHLG LYNDVIVFDHVEKKAYVIHWVRLDRHSSVEKAYSVGVEHLEKLVSRVQNVDPPKLSPG SIDLQTHHFGPSLKKSNMESEEFKGAVLQAKEHILAGDIFQIVLSQRFERRTFADPFE IYRALRVVNPSPYMAYLQARGCILVASSPEILTRVKKNKIVNRPLAGTARRGKTPAED ELAEKQLLSNEKECAEHIMLVDLGRNDVGKVSKYGSVKVEKLMNIERYSHVMHLSSTV IGELHDHLSSWDALRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGD LDIALALRTMVFTTGTRYDTMYSYKDAGRRQEWVAHLQAGAGIVADSDPDAEHRECQS KAAGLARSIDLAESAFVNK" gene complement(1184115..1189611) /locus_tag="TCM_042565" /note="dbxref CacaoGD:Thecc1EG042565" mRNA complement(join(1184115..1185008,1185202..1185362, 1185617..1185824,1186279..1186432,1186777..1186870, 1186957..1187062,1187148..1187222,1187517..1187627, 1187725..1187775,1188333..1188476,1188778..1188850, 1188941..1189611)) /locus_tag="TCM_042565" /product="Ethylene-dependent gravitropism-deficient and yellow-green-like 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29669.m000828" /inference="similar to AA sequence:Phytozome:GSVIVT01032853001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15197t00001" mRNA complement(join(1184365..1185008,1185202..1185362, 1185617..1185824,1186279..1186432,1186777..1186870, 1186957..1187062,1187148..1187222,1187517..1187627, 1187725..1187775,1188333..1188476,1188778..1188841, 1188941..1189195)) /locus_tag="TCM_042565" /product="Ethylene-dependent gravitropism-deficient and yellow-green-like 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29669.m000828" /inference="similar to AA sequence:Phytozome:GSVIVT01032853001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10470t3_C1; inference alignment:Newbler:10:TSA:cgbaL_g15197t00001" mRNA complement(join(1184365..1185008,1185202..1185362, 1185617..1185824,1186279..1186432,1186777..1186870, 1186957..1187062,1187148..1187222,1187517..1187775, 1188333..1188476,1188778..1188850,1188941..1189195)) /locus_tag="TCM_042565" /product="Ethylene-dependent gravitropism-deficient and yellow-green-like 2 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29669.m000828" /inference="similar to AA sequence:ricco:29669.m000828" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc3216t5; inference alignment:Newbler:10:TSA:cgbaL_g15197t00001" mRNA complement(join(1184365..1185008,1185202..1185362, 1185617..1185824,1186279..1186432,1186777..1186870, 1186957..1187062,1187148..1187222,1187517..1187627, 1187733..1187758)) /locus_tag="TCM_042565" /product="Ethylene-dependent gravitropism-deficient and yellow-green-like 2 isoform 4" /inference="alignment:exonerate- protein:2:ricco:29669.m000828" /inference="similar to AA sequence:ricco:29669.m000828" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc3216t1; inference alignment:Newbler:10:TSA:cgbaL_g15197t00001" CDS complement(join(1184760..1185008,1185202..1185362, 1185617..1185824,1186279..1186432,1186777..1186870, 1186957..1187062,1187148..1187222,1187517..1187627, 1187725..1187775,1188333..1188476,1188778..1188841, 1188941..1189095)) /locus_tag="TCM_042565" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ethylene-dependent gravitropism-deficient and yellow-green-like 2 isoform 2" /protein_id="EOY17853.1" /db_xref="Phytozome:GSVIVT01032853001" /db_xref="TAIR:AT5G05740.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFK3" /translation="MNFAVSFRGNFGVLSQCSSCCDLRFQPLLASPSLAKSKRCRLRN LKFSQLSRRREIVCRVTETETESDSNNEKEKEENEGGENPDTTGSAERNDSQIDPQPV NVEQIKNNGAETIAQGGVQEDGDVEVTSGSPLPGVKPQQLDETMRIPKETIDILKDQV FAFDTFFVTSQEPYEGGVLFKGNLRGQAARSYEKISTRMQNKFGDQYKLFLLINPEDD KPVAVVVPKTTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPSLQSNLLSTFDNLNLL LDGLPGAFVTALLLGLHEFGHILVAKSTGVKLGVPFFVPSWQIGSFGAITRIKSIVPK REDLLKVAAAGPLAGFSLGFVLFLLGFILPPSDGIGVVVDASVFHESFLAGGVAKLLL GDALKEGTPISLNPLVIWAWAGLLINAINSIPAGELDGGRISLAIWGRKASSRFTAVS IALLGISSLFNDVAFYWVVLIFFLQRGPISPLSEEITDPDGKYVALGVLVLILGLLVC LPYPFPFTDESITNF" CDS complement(join(1184760..1185008,1185202..1185362, 1185617..1185824,1186279..1186432,1186777..1186870, 1186957..1187062,1187148..1187222,1187517..1187627, 1187725..1187775,1188333..1188476,1188778..1188850, 1188941..1189095)) /locus_tag="TCM_042565" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ethylene-dependent gravitropism-deficient and yellow-green-like 2 isoform 1" /protein_id="EOY17852.1" /db_xref="Phytozome:GSVIVT01032853001" /db_xref="TAIR:AT5G05740.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFK3" /translation="MNFAVSFRGNFGVLSQCSSCCDLRFQPLLASPSLAKSKRCRLRN LKFSQLSRFCRRREIVCRVTETETESDSNNEKEKEENEGGENPDTTGSAERNDSQIDP QPVNVEQIKNNGAETIAQGGVQEDGDVEVTSGSPLPGVKPQQLDETMRIPKETIDILK DQVFAFDTFFVTSQEPYEGGVLFKGNLRGQAARSYEKISTRMQNKFGDQYKLFLLINP EDDKPVAVVVPKTTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPSLQSNLLSTFDNL NLLLDGLPGAFVTALLLGLHEFGHILVAKSTGVKLGVPFFVPSWQIGSFGAITRIKSI VPKREDLLKVAAAGPLAGFSLGFVLFLLGFILPPSDGIGVVVDASVFHESFLAGGVAK LLLGDALKEGTPISLNPLVIWAWAGLLINAINSIPAGELDGGRISLAIWGRKASSRFT AVSIALLGISSLFNDVAFYWVVLIFFLQRGPISPLSEEITDPDGKYVALGVLVLILGL LVCLPYPFPFTDESITNF" CDS complement(join(1184760..1185008,1185202..1185362, 1185617..1185824,1186279..1186432,1186777..1186870, 1186957..1187062,1187148..1187222,1187517..1187642)) /locus_tag="TCM_042565" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29669.m000828" /codon_start=1 /product="Ethylene-dependent gravitropism-deficient and yellow-green-like 2 isoform 3" /protein_id="EOY17854.1" /db_xref="TAIR:AT5G05740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFK3" /translation="MFPQQPQQLDETMRIPKETIDILKDQVFAFDTFFVTSQEPYEGG VLFKGNLRGQAARSYEKISTRMQNKFGDQYKLFLLINPEDDKPVAVVVPKTTLQPETT AVPEWFAAGAFGLVTVFTLLLRNVPSLQSNLLSTFDNLNLLLDGLPGAFVTALLLGLH EFGHILVAKSTGVKLGVPFFVPSWQIGSFGAITRIKSIVPKREDLLKVAAAGPLAGFS LGFVLFLLGFILPPSDGIGVVVDASVFHESFLAGGVAKLLLGDALKEGTPISLNPLVI WAWAGLLINAINSIPAGELDGGRISLAIWGRKASSRFTAVSIALLGISSLFNDVAFYW VVLIFFLQRGPISPLSEEITDPDGKYVALGVLVLILGLLVCLPYPFPFTDESITNF" CDS complement(join(1184760..1185008,1185202..1185362, 1185617..1185824,1186279..1186432,1186777..1186870, 1186957..1187062,1187148..1187222,1187517..1187606)) /locus_tag="TCM_042565" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29669.m000828" /codon_start=1 /product="Ethylene-dependent gravitropism-deficient and yellow-green-like 2 isoform 4" /protein_id="EOY17855.1" /db_xref="TAIR:AT5G05740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFK3" /translation="MRIPKETIDILKDQVFAFDTFFVTSQEPYEGGVLFKGNLRGQAA RSYEKISTRMQNKFGDQYKLFLLINPEDDKPVAVVVPKTTLQPETTAVPEWFAAGAFG LVTVFTLLLRNVPSLQSNLLSTFDNLNLLLDGLPGAFVTALLLGLHEFGHILVAKSTG VKLGVPFFVPSWQIGSFGAITRIKSIVPKREDLLKVAAAGPLAGFSLGFVLFLLGFIL PPSDGIGVVVDASVFHESFLAGGVAKLLLGDALKEGTPISLNPLVIWAWAGLLINAIN SIPAGELDGGRISLAIWGRKASSRFTAVSIALLGISSLFNDVAFYWVVLIFFLQRGPI SPLSEEITDPDGKYVALGVLVLILGLLVCLPYPFPFTDESITNF" gene complement(1190231..1192503) /locus_tag="TCM_042566" /note="dbxref CacaoGD:Thecc1EG042566" mRNA complement(join(1190231..1190667,1191013..1191379, 1191834..1191908,1192032..1192127,1192349..1192503)) /locus_tag="TCM_042566" /product="Uncharacterized protein" /inference="similar to AA sequence:ricco:29669.m000827" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg775t1" CDS complement(join(1190396..1190667,1191013..1191379, 1191834..1191908,1192032..1192127,1192349..1192375)) /locus_tag="TCM_042566" /note="dbxref ricco:29669.m000827" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17856.1" /translation="MAPRGRSRKRSNTRMAAATDAMKPFGFPNNLVVKTIKELLNVYG EEGWPFIEDAAYKVLIEAILEKDNGGETSHSKEPAAETSGGTLALACFDVNPPNTALQ ISNDLDPASETSGGTLAVACSDVNRPNTALQIGNDLDPASETCGGTLALACSDVNPPN TVLQISNGLDPESETNEALGTANLSNESVEAGGPERDPIQHPGSTSQSTPSLTHTPPM PESNSTRQRRPYYGWICSDDEEDLVELTPGPLAEEMENLLLSLRGQRERKQRWNVKPE DI" gene complement(1194324..1198873) /locus_tag="TCM_042567" /note="dbxref CacaoGD:Thecc1EG042567" mRNA complement(join(1194324..1194880,1195649..1195906, 1195997..1196204,1196885..1196982,1197077..1197260, 1197382..1197494,1197603..1197788,1197909..1198091, 1198376..1198873)) /locus_tag="TCM_042567" /product="hypothetical protein" /inference="alignment:exonerate- protein:2:ricco:29669.m000821" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021727t2" /inference="similar to AA sequence:ricco:29669.m000821" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg789t1; alternateUTRof:Thecc1EG042567t1; inference alignment:Newbler:10:TSA:cgbaL_g06998t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7953t8_C1" mRNA complement(join(1194333..1194880,1195649..1195906, 1195997..1196204,1196885..1196982,1197077..1197260, 1197382..1197494,1197603..1197788,1197909..1198091, 1198366..1198812)) /locus_tag="TCM_042567" /product="hypothetical protein" /inference="alignment:exonerate- protein:2:ricco:29669.m000821" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021727t2" /inference="similar to AA sequence:ricco:29669.m000821" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06998t00001; inference alignment:Newbler:10:TSA:cgbaL_g06998t00001" CDS complement(join(1194674..1194880,1195649..1195906, 1195997..1196204,1196885..1196982,1197077..1197260, 1197382..1197494,1197603..1197788,1197909..1198079)) /locus_tag="TCM_042567" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29669.m000821; paralog of Thecc1EG021727t2; Like AUXIN RESISTANT 1 isoform 1" /codon_start=1 /product="hypothetical protein" /protein_id="EOY17857.1" /db_xref="TAIR:AT5G01240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFB2" /translation="MSGQKQAEEAIVPSLNEASEHEEKEEEKGDHSIFSVKSLLWHGG SVYDAWFSCASNQVAQVLLTLPYSFSQMGMLSGIILQIFYGFLGSWTAYLISVLYIEY RSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIY YINDKLDKRTWTYIFGACCATTVFIPSFHNYRMWSFLGLGMTTYTAWYLTIAALVHGQ VEGVTHQGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKCIYLLATLYVFT LTIPSAAAVYWAFGDQLLNHSNAFSLLPHSGWRDAAVVLMLIHQFITFGFACTPLYFV WEKVVGMHDTKSICLRAVCRLPVVIPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPA LAHMLTYKSASARQNAAEKPPFFLPSWTAVYAVNTFIVAWVFVVGFGLGGWASMTNFI KQVDTFGLFAKCYQCPPSPSSKHH" CDS complement(join(1194674..1194880,1195649..1195906, 1195997..1196204,1196885..1196982,1197077..1197260, 1197382..1197494,1197603..1197788,1197909..1198079)) /locus_tag="TCM_042567" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29669.m000821; paralog of Thecc1EG021727t2; Like AUXIN RESISTANT 1 isoform 1" /codon_start=1 /product="hypothetical protein" /protein_id="EOY17858.1" /db_xref="TAIR:AT5G01240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFB2" /translation="MSGQKQAEEAIVPSLNEASEHEEKEEEKGDHSIFSVKSLLWHGG SVYDAWFSCASNQVAQVLLTLPYSFSQMGMLSGIILQIFYGFLGSWTAYLISVLYIEY RSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIY YINDKLDKRTWTYIFGACCATTVFIPSFHNYRMWSFLGLGMTTYTAWYLTIAALVHGQ VEGVTHQGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKCIYLLATLYVFT LTIPSAAAVYWAFGDQLLNHSNAFSLLPHSGWRDAAVVLMLIHQFITFGFACTPLYFV WEKVVGMHDTKSICLRAVCRLPVVIPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPA LAHMLTYKSASARQNAAEKPPFFLPSWTAVYAVNTFIVAWVFVVGFGLGGWASMTNFI KQVDTFGLFAKCYQCPPSPSSKHH" gene complement(1205182..1209080) /locus_tag="TCM_042568" /note="dbxref CacaoGD:Thecc1EG042568" mRNA complement(join(1205182..1205384,1206142..1206678, 1206880..1207077,1207365..1207403,1207746..1207891, 1208012..1208262,1208681..1209080)) /locus_tag="TCM_042568" /product="Syntaxin of plants 31 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29669.m000820" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037935t2" /inference="similar to AA sequence:Phytozome:POPTR_0010s19850.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03895t00001" mRNA complement(join(1205182..1205384,1206142..1206678, 1206880..1207077,1207365..1207403,1207592..1207644, 1207746..1207891,1208012..1208262,1208681..1209080)) /locus_tag="TCM_042568" /product="Syntaxin of plants 31 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29669.m000820" /inference="similar to AA sequence:Phytozome:POPTR_0010s19850.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b041098t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g01631t00001" CDS complement(join(1206519..1206678,1206880..1207077, 1207365..1207403,1207746..1207891,1208012..1208262, 1208681..1208903)) /locus_tag="TCM_042568" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037935t2" /codon_start=1 /product="Syntaxin of plants 31 isoform 1" /protein_id="EOY17859.1" /db_xref="Phytozome:POPTR_0010s19850.1" /db_xref="TAIR:AT5G05760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HSQ9" /translation="MTSPYRDRTAEFRSLLQTLQKIGGISSVNDSHLQNDHVSKPPPP LSSRSEFNKKASLIGSGIHETSQKIVRLAKLAKRSSMFDDPIMEIQELTALIKSDITA LNMALSDLQTLQNMEIADGNYSEDRVVHSTTVCDDLKGKLMGATKHLQDVLTARTENI KAHENRKQIFSKNASRENPFQRQTESVTEPPPWSSSSTASGSLPQSGLPPNGVQAGSQ LRRRPAVDGTPSHHMEMSMLQQVVPRQEHYSQSRAVALQNVESTISELSGIFTHLATM VAQQGELAIRIDEDMDQSLANVEGARNALLRHLNQISSNRWLLIKIFIAIVFFLVVFI IFVA" CDS complement(join(1207013..1207077,1207365..1207403, 1207592..1207644,1207746..1207891,1208012..1208262, 1208681..1208903)) /locus_tag="TCM_042568" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Syntaxin of plants 31 isoform 2" /protein_id="EOY17860.1" /db_xref="Phytozome:POPTR_0010s19850.1" /db_xref="TAIR:AT5G05760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HSQ9" /translation="MTSPYRDRTAEFRSLLQTLQKIGGISSVNDSHLQNDHVSKPPPP LSSRSEFNKKASLIGSGIHETSQKIVRLAKLAKRSSMFDDPIMEIQELTALIKSDITA LNMALSDLQTLQNMEIADGNYSEDRVVHSTTVCDDLKGKLMGATKHLQDVLTARTENI KAHENRKQIFSKNASRENPFQRQTESVTEPPPWSSSSTASGSLPQSGRQDQVFPGYYF YESKESDCHQMEFKLAANSDEGQLWMEHLPTTWKCPCCSR" gene 1209249..1213166 /locus_tag="TCM_042569" /note="dbxref CacaoGD:Thecc1EG042569" mRNA join(1209249..1209742,1209834..1209905,1210386..1210484, 1210590..1211399) /locus_tag="TCM_042569" /product="Ribosomal protein L10 family protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041647t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19860.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6659t3" mRNA join(1209295..1209742,1209837..1209905,1210386..1210484, 1210590..1211126,1212890..1213166) /locus_tag="TCM_042569" /product="Ribosomal protein L10 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041647t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19860.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4074t1" CDS join(1209485..1209742,1209834..1209905,1210386..1210484, 1210590..1211126) /locus_tag="TCM_042569" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041647t1" /codon_start=1 /product="Ribosomal protein L10 family protein isoform 2" /protein_id="EOY17862.1" /db_xref="Phytozome:POPTR_0010s19860.1" /db_xref="TAIR:AT2G40010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P57691" /translation="MAVKPSKADKKIAYDAKLCQLLDEYTQILIAAADNVGSNQLQNI RKGLRGDSVVLMGKNTMMKRSIRMHAEKTGNTAFLNLIPLLQQGNVGLIFTKGDLKEV SEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT PVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLVEK FAAGVSMVTALSLAISYPTLAAAPHMFINAYKNVLALAIATEYSFPQADKVKEYLADP SKFAVAAAPVAADAGAAPAAPAAVEEKKPEPEEESDDDMGFSLFD" CDS join(1209485..1209742,1209837..1209905,1210386..1210484, 1210590..1211126) /locus_tag="TCM_042569" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041647t1" /codon_start=1 /product="Ribosomal protein L10 family protein isoform 1" /protein_id="EOY17861.1" /db_xref="Phytozome:POPTR_0010s19860.1" /db_xref="TAIR:AT2G40010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P57691" /translation="MAVKPSKADKKIAYDAKLCQLLDEYTQILIAAADNVGSNQLQNI RKGLRGDSVVLMGKNTMMKRSIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVS EEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP VELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLVEKF AAGVSMVTALSLAISYPTLAAAPHMFINAYKNVLALAIATEYSFPQADKVKEYLADPS KFAVAAAPVAADAGAAPAAPAAVEEKKPEPEEESDDDMGFSLFD" gene 1218821..1221084 /locus_tag="TCM_042570" /note="dbxref CacaoGD:Thecc1EG042570" mRNA 1218821..1221084 /locus_tag="TCM_042570" /product="sugar beet HS1 PRO-1 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19870.1" /inference="similar to AA sequence:ricco:29669.m000814" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02635t00001" CDS 1218893..1220323 /locus_tag="TCM_042570" /note="dbxref ricco:29669.m000814" /codon_start=1 /product="sugar beet HS1 PRO-1 2" /protein_id="EOY17863.1" /db_xref="TAIR:AT2G40000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC04" /translation="MVDLDWKAKMVSSDIPNKSAKLSNKLQVSIPTSFRFSNVSSPFS TSASASSDYDYYLRLPELRKLWETKEFPGWQNECVLKPALHALEITFRFISIVLSDPR PYSNRREWTRRLESLTTSQIELIALLCEDENEDKTAAGTAPIVDLTSSNGVLARESSS TQVWKIHGEATVVSRTSEASLLPRLATWQKSKDVAQKILYSIECEMRRCPYTLGLGEP NLSGKPNLDYDAVCRPNELHELKKSPYDHIENHENATLYTTHHILESWIQSAKQVLKR IASRIDAESFEAAASDCYLMEKIWKLLAEIEDLHLLMDPDDFLHLKSQLLIKSVSETE AFCFRSKGLVEITRMSKELKHKVPFILGVEVDPKGGPRIQEAAMRLYAEKQEGSKVFL VQALQAIEGALKRFFYGFKQVLVVVMGSLEAKGNRVVASSDMGDSLSQIFLEPTYFPS LDAAKTFLGEFWSHEHGGSGWTRWRK" mobile_element complement(1221561..1222041) /note="source:CACAO_M_E22921_F74_scaffold_3 1 494" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1222047..1225445 /locus_tag="TCM_042571" /note="dbxref CacaoGD:Thecc1EG042571" mRNA join(1222047..1222306,1223241..1224428,1224732..1225445) /locus_tag="TCM_042571" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29669.m000812" /inference="similar to AA sequence:Phytozome:POPTR_0010s19900.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8309t1" CDS join(1223293..1224428,1224732..1224987) /locus_tag="TCM_042571" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY17864.1" /db_xref="Phytozome:POPTR_0010s19900.1" /db_xref="TAIR:AT2G29670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HSR4" /translation="MELSFAPKSMQMSMLKLLPKPASFISSVWFATHGGRRQPLAYCL VRRSTLFSSRKFRGHNLKLARCVRFNDFSDGESSEWFGGDFQLFDYTEDEENHEEEPA PAVYEESGEEGKEMELSMQLLPSKVEFLEPYLLGIRPEPPYWPERDEVSRISIEHKAN SLDIPLSLRIIKKKQRWKEGFVDAGEYAYCSVKNAFSSLVFIIRELQNHTWQIRENLQ PEDLRVILTKMQGDLNSMFVWLFQQVFSKTPTLMVYLMLLLANFSVHSMAPQQPSTTQ KAIAATMSLTEEESEETSGSGSSTSLQHTSGELDLWKSMVEEAARMQGGHHQKINMQF RPDNHEELVKRNIVYQMCIAEEPTNPLLVVNYARFLYLVAHDHDRAEEWFKRAIQIEP PDAEALGQYADFLWKVRNDHWEAEERYLQAVAADPENPHYASKYADFLWSTGAKDICF PLSSPHDSYNKVS" gene complement(1225881..1229945) /locus_tag="TCM_042572" /note="dbxref CacaoGD:Thecc1EG042572" mRNA complement(join(1225881..1226578,1227334..1227404, 1227509..1227669,1228378..1228774,1229398..1229852)) /locus_tag="TCM_042572" /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06590.1" /inference="similar to AA sequence:Phytozome:Glyma02g42230.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3911t3" mRNA complement(join(1226061..1226578,1227334..1227669, 1228378..1228774,1229398..1229945)) /locus_tag="TCM_042572" /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06590.1" /inference="similar to AA sequence:frave:gene20928" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc209t7; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7622t10; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3911t3" mRNA complement(join(1226061..1226578,1227334..1227400, 1227507..1227669,1228378..1228774,1229398..1229624)) /locus_tag="TCM_042572" /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06590.1" /inference="similar to AA sequence:frave:gene20928" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9449t10; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7622t10; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3911t3" CDS complement(join(1226418..1226578,1227334..1227404, 1227509..1227669,1228378..1228774,1229398..1229606)) /locus_tag="TCM_042572" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 1" /protein_id="EOY17865.1" /db_xref="Phytozome:Glyma02g42230.1" /db_xref="TAIR:AT3G55830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHM0" /translation="MRGSLPVNRRTVFKLRQVGISTLGSVKIRILLCGCVALTLLAVA NRNRDSSSFMRWTDDVDSLHSSSSSRGRYAIVMNTWKRYDLLKKSISHYASCPRLESI HLVWSEPDPPSDSLKRFLNHAIQLNSGNGHRVQLVFDINKEDSLNNRFKEIRDLKTDA VFSIDDDVIFPCSSVEFAFTVWQSAPDTMVGYVPRMHWVDEKKGKDNYIYGGWWSVWW TGTYSMILSKAAFFHKKYLKLYTDEMPASIKEYITRNRNCEDIAMSFLVANATGAPPI WVKGKIFEIGSTGISSLGGHSDRRTQCVNKFVAEFGRMPLVSTSMKAVDSRNVWLW" mRNA complement(join(1226555..1226952,1227334..1227404, 1227509..1227669,1228378..1228774,1229398..1229945)) /locus_tag="TCM_042572" /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06590.1" /inference="similar to AA sequence:frave:gene20928" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc209t4; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7622t10; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3911t3" CDS complement(join(1226942..1226952,1227334..1227404, 1227509..1227669,1228378..1228774,1229398..1229606)) /locus_tag="TCM_042572" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene20928" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 2" /protein_id="EOY17866.1" /db_xref="TAIR:AT3G55830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHM0" /translation="MRGSLPVNRRTVFKLRQVGISTLGSVKIRILLCGCVALTLLAVA NRNRDSSSFMRWTDDVDSLHSSSSSRGRYAIVMNTWKRYDLLKKSISHYASCPRLESI HLVWSEPDPPSDSLKRFLNHAIQLNSGNGHRVQLVFDINKEDSLNNRFKEIRDLKTDA VFSIDDDVIFPCSSVEFAFTVWQSAPDTMVGYVPRMHWVDEKKGKDNYIYGGWWSVWW TGTYSMILSKAAFFHKKYLKLYTDEMPASIKEYITRNRNCEDIAMSFLVANATGAPPI WVKEVL" CDS complement(join(1227337..1227669,1228378..1228774, 1229398..1229606)) /locus_tag="TCM_042572" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene20928" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 4" /protein_id="EOY17868.1" /db_xref="TAIR:AT3G55830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHM0" /translation="MRGSLPVNRRTVFKLRQVGISTLGSVKIRILLCGCVALTLLAVA NRNRDSSSFMRWTDDVDSLHSSSSSRGRYAIVMNTWKRYDLLKKSISHYASCPRLESI HLVWSEPDPPSDSLKRFLNHAIQLNSGNGHRVQLVFDINKEDSLNNRFKEIRDLKTDA VFSIDDDVIFPCSSVEFAFTVWQSAPDTMVGYVPRMHWVDEKKGKDNYIYGGWWSVWW TGTYSMILSKAAFFHKKYLKLYTDEMPASIKEYITRNRSLFIYYHCRLFKCFHHFMHV TCFINILTPVLDSPGIVKILQCHFLLQMQQVLLPYG" CDS complement(join(1227396..1227400,1227507..1227669, 1228378..1228774,1229398..1229606)) /locus_tag="TCM_042572" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene20928" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 3" /protein_id="EOY17867.1" /db_xref="TAIR:AT3G55830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHM0" /translation="MRGSLPVNRRTVFKLRQVGISTLGSVKIRILLCGCVALTLLAVA NRNRDSSSFMRWTDDVDSLHSSSSSRGRYAIVMNTWKRYDLLKKSISHYASCPRLESI HLVWSEPDPPSDSLKRFLNHAIQLNSGNGHRVQLVFDINKEDSLNNRFKEIRDLKTDA VFSIDDDVIFPCSSVEFAFTVWQSAPDTMVGYVPRMHWVDEKKGKDNYIYGGWWSVWW TGTYSMILSKAAFFHKKYLKLYTDEMPASIKEYITRNRL" mobile_element 1231127..1231562 /note="source:CACAO_on_S_E390_scaffold_9 2391 2850" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1231632..1231922) /note="source:scaffold_1_CACTA_0009 2220 2511" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1233607..1234384 /note="source:CACAO_Again_on_S_E38_scaffold_1 1 772" /mobile_element_type="transposon:TIR/hAT" gene 1235357..1237361 /locus_tag="TCM_042573" /note="dbxref CacaoGD:Thecc1EG042573" mRNA join(1235357..1235698,1235841..1236139,1236328..1236468, 1236571..1237361) /locus_tag="TCM_042573" /product="Plasma membrane intrinsic protein 1,4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016272t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s19930.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3916t1" CDS join(1235362..1235698,1235841..1236139,1236328..1236468, 1236571..1236663) /locus_tag="TCM_042573" /note="paralog of Thecc1EG016272t3" /codon_start=1 /product="Plasma membrane intrinsic protein 1,4" /protein_id="EOY17869.1" /db_xref="Phytozome:POPTR_0010s19930.1" /db_xref="TAIR:AT4G00430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43286" /translation="MEGKEEDVRLGANKFSERQPIGTAAQSQDEEKDYTEPPPAPLFE PGELTSWSFYRAGIAEFVATFLFLYITILTVMGVVKETTKCPTVGIQGIAWAFGGMIF ALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQCLGAICGAGVVKGFMGKR RYGALNGGANFVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLP IGFAVFLVHLATIPITGTGINPARSLGAAIIFNKERGWNDHWIFWVGPFIGATLAALY HQVVIRAMPFKSK" gene complement(1238174..1239585) /locus_tag="TCM_042574" /note="dbxref CacaoGD:Thecc1EG042574" mRNA complement(1238174..1239585) /locus_tag="TCM_042574" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage" gene 1238555..1239442 /locus_tag="TCM_042575" /note="dbxref CacaoGD:Thecc1EG042575" mRNA 1238555..1239442 /locus_tag="TCM_042575" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc18t55" CDS 1238768..1238971 /locus_tag="TCM_042575" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17871.1" /translation="MTSGSLNTQNHAVTKLQVQQKNPRKNKARTHQRLKSRPILGVEP FPYQESRSYNSSRPTTQTATTKR" CDS complement(1239161..1239472) /locus_tag="TCM_042574" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17870.1" /translation="MYADMWLLSSRKNGHFFDWKKECHYGGLVSDFQNGWMVPVSMIT MLVFKVLDECFMCSDSVFAADFVAIIAAGCSWSLIFMFGCVFQALSGLALSSCSVNVQ V" mobile_element 1239522..1239621 /note="source:CACAO_M_S_E16386_F9_scaffold_2 2042 2142" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1239883..1242380) /locus_tag="TCM_042576" /note="dbxref CacaoGD:Thecc1EG042576" mRNA complement(join(1239883..1240668,1241100..1241372, 1241515..1241910,1241991..1242380)) /locus_tag="TCM_042576" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042578t2" /inference="similar to AA sequence:Phytozome:GSVIVT01018908001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g08357t00001" CDS complement(join(1240321..1240668,1241100..1241372, 1241515..1241910,1241991..1242065)) /locus_tag="TCM_042576" /note="paralog of Thecc1EG042578t2" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /protein_id="EOY17872.1" /db_xref="Phytozome:GSVIVT01018908001" /db_xref="TAIR:AT3G11480.1" /translation="MEVKEMLFMNKGDGENSYVKTSGYTQKVAAVTQPVVYRAAQSLF TGRNSCSYQVLNVADLGCSSGPNTFTVMSTVIESTRDKCTELNWQMPEIQFYLNDLVG NDFNTLFKGLSVIQDKYKNVSCFAMGAPGSFHGRLFPQNSMHLIHSSYGVQWLSKVPK MTSEGGLSPPNKGKIYISKTSPPAVWKAYLSQFQEDFLSFLRCRSPELVPDGRMVLII HGRKSADPTTRESCYTWEVLADAISYQVSQGLIDEEKLNSFNVPYYIPSQEEVRDLVN KEGSFLTEFVDTIEVELEGIWTGPENGAKNLRSFTEPMISHQFGEEVMDKLYDKVKDI LVEDCKQEKQSTRGVSIVLELKKKESHLS" mobile_element complement(1240558..1240704) /note="source:scaffold_10_CACTA_0141 5393 5544" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1241074..1241410) /note="source:scaffold_10_CACTA_0141 4723 5058" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1241496..1242128) /note="source:scaffold_10_CACTA_0141 4065 4701" /mobile_element_type="transposon:TIR/CACTA" gene complement(1242462..1244052) /locus_tag="TCM_042577" /note="dbxref CacaoGD:Thecc1EG042577" mRNA complement(join(1242462..1243068,1243542..1243687, 1243821..1244052)) /locus_tag="TCM_042577" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.63 coverage" mobile_element complement(1242501..1242580) /note="source:CACAO_M_E14113_F106_scaffold_3 13758 13842" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(1242892..1243068,1243542..1243687, 1243821..1243992)) /locus_tag="TCM_042577" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17873.1" /translation="MLKESEWGFNFLCECSKDDELLFVFVGAPSLLETEPPRTQLTSL APFWNFEMHVILYEIGEKDLGVHRRRYGYQEYQVLEKSTYMSSHYPGEEILYNLSDEF SQRLGLIDEGKLDSFNVPYYNPSQNEVQCLVDKEGYLTTEFIDTIALDIGRAQTQELK ATDA" mobile_element complement(1242954..1243097) /note="source:scaffold_10_CACTA_0141 5404 5548" /mobile_element_type="transposon:TIR/CACTA" gene complement(1243053..1246014) /locus_tag="TCM_042578" /note="dbxref CacaoGD:Thecc1EG042578" mRNA complement(join(1243053..1243522,1244174..1244579, 1244971..1245240,1245326..1245721,1245815..1246014)) /locus_tag="TCM_042578" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042584t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018900001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00005t00010; inference alignment:Newbler:10:TSA:cgbaB_g00005t00010" mRNA complement(join(1244103..1244579,1244971..1245240, 1245326..1245721,1245815..1245992)) /locus_tag="TCM_042578" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042584t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018900001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6880t1; alternateUTRof:Thecc1EG042578t1; inference alignment:Newbler:10:TSA:cgbaB_g00005t00010; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc18t50" CDS complement(join(1244223..1244579,1244971..1245240, 1245326..1245721,1245815..1245895)) /locus_tag="TCM_042578" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042584t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY17874.1" /db_xref="Phytozome:GSVIVT01018900001" /db_xref="TAIR:AT5G66430.1" /translation="MAMKVKDIVFMNKGDGENSYVKSAGLTLKVIAKTQPIVQKAVQS LFTGTHSTPLQVVNVADLGCALGPQPLESMSIVIESIVEKCGELGCEMPEIQFHLNDL AGNDFNTLFKGLSVVQEKYKNVSWFAMGAPGSFHGRLFPRNSMHLVHSCYSVHWLSKA PKITSEAGLPLNKGKIYMSKTSPPAVREGYLSQFEEDFSSVLRFRSPELAPDGRMVLI LNGRQSADPTEKDICYLWDLLAEALSYLVSEGLIDEEKLDSFNVPYYNPSQEEVERVI DKEGSFTTEFSDTVVLEIGGKNAWSDPGLRIKGYRCFSEPILSHQFGEEVMDKLFDKA EEILAEDYKQGKEATKNISIVVVLKKKTNQTWT" CDS complement(join(1244223..1244579,1244971..1245240, 1245326..1245721,1245815..1245895)) /locus_tag="TCM_042578" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042584t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY17875.1" /db_xref="Phytozome:GSVIVT01018900001" /db_xref="TAIR:AT5G66430.1" /translation="MAMKVKDIVFMNKGDGENSYVKSAGLTLKVIAKTQPIVQKAVQS LFTGTHSTPLQVVNVADLGCALGPQPLESMSIVIESIVEKCGELGCEMPEIQFHLNDL AGNDFNTLFKGLSVVQEKYKNVSWFAMGAPGSFHGRLFPRNSMHLVHSCYSVHWLSKA PKITSEAGLPLNKGKIYMSKTSPPAVREGYLSQFEEDFSSVLRFRSPELAPDGRMVLI LNGRQSADPTEKDICYLWDLLAEALSYLVSEGLIDEEKLDSFNVPYYNPSQEEVERVI DKEGSFTTEFSDTVVLEIGGKNAWSDPGLRIKGYRCFSEPILSHQFGEEVMDKLFDKA EEILAEDYKQGKEATKNISIVVVLKKKTNQTWT" mobile_element complement(1244465..1245991) /note="source:scaffold_10_CACTA_0141 4023 5548" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1246284..1246329) /note="source:scaffold_10_CACTA_0141 3478 3532" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1246326..1246363 /note="source:scaffold_10_CACTA_0141 3402 3442" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1246360..1246462 /note="source:scaffold_10_CACTA_0141 2879 2981" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1246391..1246627) /note="source:scaffold_10_CACTA_0141 3236 3475" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1246719..1252239 /note="source:INTACT1604F_F75_scaffold_10-int 1 5568" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1253196..1253333) /note="source:scaffold_9_CACTA_0946 4178 4317" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1255905..1256555) /note="source:CACAO_on_E2_scaffold_1 1 635" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(1259852..1260152) /note="source:scaffold_10_CACTA_0141 4397 4698" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1260442..1260539) /note="source:scaffold_10_CACTA_0141 4023 4120" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1260637..1261273) /note="source:scaffold_10_CACTA_0141 2761 3459" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1261277..1261426) /note="source:scaffold_10_CACTA_0141 2731 2880" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1261423..1261581) /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2020" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1261579..1261822) /note="source:scaffold_10_CACTA_0141 2493 2742" /mobile_element_type="transposon:TIR/CACTA" gene complement(1261607..1264124) /locus_tag="TCM_042580" /note="dbxref CacaoGD:Thecc1EG042580" mRNA complement(join(1261607..1262537,1263025..1263225, 1263295..1263363,1263422..1263844,1263934..1264124)) /locus_tag="TCM_042580" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042578t2" /inference="similar to AA sequence:Phytozome:GSVIVT01018900001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6929t2" CDS complement(join(1262181..1262537,1263025..1263225, 1263295..1263363,1263422..1263844,1263934..1264008)) /locus_tag="TCM_042580" /note="paralog of Thecc1EG042578t2" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /protein_id="EOY17876.1" /db_xref="Phytozome:GSVIVT01018900001" /db_xref="TAIR:AT1G19640.1" /translation="MEVKDIVFMNKGDGENSYVKSAGLTLKVIAKTQPMVQKAVQSLF KGTHSAPLQVVNVADLGCALAPQPLESMSIVIESIVEKCGELGCEMPEIQFHFNDLAG NDFNTLFKGLSVVQEKYKNVSWFAMGAPGSFHGRLFPRNSMHLVHSCYSVHWLSKVCH FFFNLLAPKITSEEGLPLNKGKIYMSKTSXXXXXXXXXXXFEEDFSSVLRFRSPELAP DGRMVLILNGRQSADPTEKDICYLWDLLAEALSYLVSEGLIDEEKLDSFNVPYYNPSQ EEVERVIDKEGSFTTEFSDTVVLEIGGKNAWSDPGLRIKGYRCFSEPVLSHQFGEEVM DKLFDKAEEILAEDYKQGKEATKNISIVVVLKKKTNQTWT" mobile_element complement(1262423..1262570) /note="source:scaffold_10_CACTA_0141 5401 5548" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1262671..1263194) /note="source:scaffold_10_CACTA_0141 4870 5392" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1263295..1266639) /note="source:scaffold_10_CACTA_0141 1496 4838" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1266740..1271000 /note="source:scaffold_1_CACTA_0009 9312 13827" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1270993..1271254) /note="source:scaffold_10_CACTA_0141 4989 5252" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1271245..1271401) /note="source:scaffold_10_CACTA_0141 2877 3031" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1271505..1272047) /note="source:scaffold_10_CACTA_0141 2517 3056" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1272064..1272171) /note="source:scaffold_10_CACTA_0141 2734 2841" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1282732..1282825 /note="source:CACAO_M_S_E100128_F369_scaffold_9 1385 1434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1282772..1282828) /note="source:CACAO_M_E14113_F106_scaffold_3 13797 13853" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1282896..1320766) /locus_tag="TCM_042582" /note="dbxref CacaoGD:Thecc1EG042582" mRNA complement(join(1282896..1283077,1313224..1313502, 1313578..1313877,1314106..1314188,1320740..1320766)) /locus_tag="TCM_042582" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13039t00001" mobile_element complement(1283087..1284193) /note="source:CACAO_on_E2_scaffold_1 56 1128" /mobile_element_type="transposon:TIR/hAT" mobile_element 1284119..1284203 /note="source:CACAO_on_E71_scaffold_9 2873 2955" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(1284463..1284524) /note="source:scaffold_10_CACTA_0141 5429 5489" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1284579..1284750) /note="source:scaffold_10_CACTA_0141 4894 5062" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1284799..1284933 /note="source:scaffold_10_CACTA_0141 4089 4225" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1285064..1285385) /note="source:scaffold_10_CACTA_0141 4023 4309" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1285413..1285588) /note="source:scaffold_10_CACTA_0141 2882 3056" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1285607..1285946) /note="source:CACAO_Mariner_E176_scaffold_6 3724 4103" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 1286061..1287741 /locus_tag="TCM_042583" /note="dbxref CacaoGD:Thecc1EG042583" mRNA join(1286061..1286139,1286226..1286319,1286401..1286786, 1287526..1287741) /locus_tag="TCM_042583" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019111t1" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS join(1286133..1286139,1286226..1286319,1286401..1286734) /locus_tag="TCM_042583" /note="paralog of Thecc1EG019111t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17878.1" /db_xref="Phytozome:Glyma07g34840.1" /translation="MTSEPASYSEAAKHPEWIFVMKEELHMIKKSGTCLNKYKARLVV KGYNQLPSVDYLETHALVAGYDTLRLLLALSAAMGWNVCHLDIKSAFLKGMLEEEIYV QPPEGFELASDQNKVYKLHKALYGLKQAPGSWYNKIDTYLTQ" gene complement(1287917..1293980) /locus_tag="TCM_042584" /note="dbxref CacaoGD:Thecc1EG042584" mRNA complement(join(1287917..1288892,1289058..1289327, 1289808..1290209,1292096..1292413,1292808..1293077, 1293163..1293558,1293648..1293980)) /locus_tag="TCM_042584" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042578t2" /inference="similar to AA sequence:frave:gene15184" /note="quality class is strong, express is medium, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07208t00001" CDS complement(join(1288554..1288892,1289058..1289327, 1289808..1290209,1292096..1292413,1292808..1293077, 1293163..1293558,1293648..1293722)) /locus_tag="TCM_042584" /note="dbxref frave:gene15184; paralog of Thecc1EG042578t2" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /protein_id="EOY17879.1" /db_xref="TAIR:AT5G04370.2" /translation="MEVKDIVFMNKGDGENSYVKSAGLTLKVIAKTQPMVQKAVQSLF KGTHSAPLQVVNVADLGCALGPQPLESMSIVIESIVEKCGELGCEMPEIQFHLNDLAG NDFNTLFKGLSVVQEKYKNVSWFAMGAPGSFHGRLFPRNSMHLVHSCYSVHWLSKAPK ITSEEGLPLNKGKIYMSKTSPPAVKEAYLSQFEEDFSSVLRFRSPELAPDGRMVLILN GRQSADPTEKDICYLRDLLAEALSYLVSEGLIDEEKLGSFNVPYYNPSQEEVERVIDK EGSFTTEFSDTVVLEIGGKNAWSDPGLRIKGYRCFSEPVLSHQFGEEVMDKLFDKAEE ILAEDYKQGKEATKNISIVAKLAAVAQPLVYKVVESVLKEKFCSSPGEVLFNVADLGC SSGPNTFTVMSTVLESVAKNCGGSECQMPEIQFYLNDLVGNDFNTLFKGLSVIQEKYK DVPRFAMGAPGSFYDRLFPRNSMHLVHSSYGIHWLSKAPKITCERGLPLNKGSIHISE TSPLKVRKAYLSQFQEDFLLFLKCRSPEMVPNGRILFTINGRKSGDPIGKESLYNFEL LSRAISYMVSKGLIDKDKLDSLNAPTFTPSQEEVEDLVEKEGSFTVEFIDTIKVEVGD AWASAESRAKNVRAFSEPWISHQFGEEIMDKLYEKVTQIVVEDYKLGKQTTMVVNIVA VLKKKDI" mobile_element complement(1289796..1290464) /note="source:scaffold_10_CACTA_0141 4026 4698" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1290565..1291109) /note="source:scaffold_10_CACTA_0141 2877 3459" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1291156..1291303) /note="source:scaffold_10_CACTA_0141 2732 2879" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1291301..1291459) /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2020" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1291457..1291698) /note="source:scaffold_10_CACTA_0141 2493 2742" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1292299..1297846) /note="source:scaffold_10_CACTA_0141 1 5548" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1297414..1298164 /note="source:CACAO_on_S_E176_scaffold_5 3648 4427" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1297697..1298269) /note="source:CACAO_on_E193_scaffold_6 3883 4590" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1298165..1302399 /note="source:scaffold_1_CACTA_0009 8602 13826" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1302393..1302654) /note="source:scaffold_10_CACTA_0141 4989 5252" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1302645..1302804) /note="source:scaffold_10_CACTA_0141 2874 3031" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1302905..1303473) /note="source:scaffold_10_CACTA_0141 2490 3053" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1303462..1303809) /note="source:scaffold_10_CACTA_0141 2496 2841" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1304200..1305270) /note="source:CACAO_Mutator_E714_scaffold_3 1330 2412" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1305263..1305438) /note="source:scaffold_10_CACTA_0141 3241 3407" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1305519..1306112) /note="source:CACAO_MITE165_scaffold_10 1 594" /mobile_element_type="transposon:TIR/MITE" mobile_element 1306510..1306584 /note="source:scaffold_10_CACTA_0138 1877 1953" /mobile_element_type="transposon:TIR/CACTA" gene complement(1307435..1324344) /locus_tag="TCM_042587" /note="dbxref CacaoGD:Thecc1EG042587" mRNA complement(join(1307435..1307992,1308086..1308355, 1308441..1308839,1308966..1309070)) /locus_tag="TCM_042587" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g011850.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042590t2" /inference="similar to AA sequence:Phytozome:GSVIVT01018900001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00051t00001_C2; inference alignment:Newbler:10:TSA:cgbaP2_g00051t00001_C2" CDS complement(join(1307645..1307992,1308086..1308355, 1308441..1308839,1308966..1309043)) /locus_tag="TCM_042587" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042590t2" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY17880.1" /db_xref="Phytozome:GSVIVT01018900001" /db_xref="TAIR:AT5G04370.1" /translation="MEAVKDVLCMNNGVGENSYVKAEALTIKVMAITKPIVPKAVQSL FTETDHSIPLQVVNVADLGCAVGPQPLEFMSTVIESILKKCGEMGREMPEIQFFLNDL VGNDFNTLFKGLSVVQEKYKKVSWFAMGAPGSFHGRLFPRNSMHLVYSCYSVHWLSEA PKITNEAGLPLNKGKIYMSKTSPPAVTKAYLSQFQEDFSSLLKFRSQELAPNGRVVLI FNGRQTADPTNKDTCYTWDLLAEALSYLVSQGLVDEGKLDSFNVPYYNPSQEEIKYLV DKEGSLTIEFIDTIELEIGGPNGYWSSPESRIRGHRCFTEPLLSHQFGERLMDKLYDK ATQILVEDYKHGKEATKNIGIAVVLKKKKL" mRNA complement(join(<1307652..1307992,1308086..1308355, 1308441..1308839,1323906..1324344)) /locus_tag="TCM_042587" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g011850.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042590t2" /inference="similar to AA sequence:Phytozome:GSVIVT01018900001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00005t00004; inference alignment:Newbler:10:TSA:cgbaB_g00005t00004; inference alignment:Newbler:10:TSA:cgbaP2_g00051t00001_C2" CDS complement(join(<1307654..1307992,1308086..1308355, 1308441..1308839,1323906..1323983)) /locus_tag="TCM_042587" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042590t2" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /protein_id="EOY17881.1" /db_xref="Phytozome:GSVIVT01018900001" /db_xref="TAIR:AT3G11480.1" /translation="MEAVKDVLCMNNGVGENSYVKAEALTIKVMAITKPIVPKAVQSL FTETDHSIPLQVVNVADLGCAVGPQPLEFMSTVIESILKKCGEMGREMPEIQFFLNDL VGNDFNTLFKGLSVVQEKYKKVSWFAMGAPGSFHGRLFPRNSMHLVYSCYSVHWLSEA PKITNEAGLPLNKGKIYMSKTSPPAVTKAYLSQFQEDFSSLLKFRSQELAPNGRVVLI FNGRQTADPTNKDTCYTWDLLAEALSYLVSQGLVDEGKLDSFNVPYYNPSQEEIKYLV DKEGSLTIEFIDTIELEIGGPNGYWSSPESRIRGHRCFTEPLLSHQFGERLMDKLYDK ATQILVEDYKHGKEATKNIGIAVVLKKK" mobile_element complement(1307881..1308020) /note="source:scaffold_10_CACTA_0141 5405 5545" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1308064..1309056) /note="source:scaffold_10_CACTA_0141 4104 5062" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1309129..1309926) /note="source:scaffold_10_CACTA_0141 2517 3315" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1310739..1310814 /note="source:scaffold_10_CACTA_0138 1876 1953" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1311054..1311197) /note="source:scaffold_9_CACTA_0946 4178 4323" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1312071..1313235) /note="source:CACAO_on_E2_scaffold_1 1 1120" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(1313381..1313501) /note="source:scaffold_10_CACTA_0141 5429 5548" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1313556..1313727) /note="source:scaffold_10_CACTA_0141 4894 5062" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(1313776..1313877,1314106..1314165)) /locus_tag="TCM_042582" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17877.1" /translation="MEVKDIVFMNKGDGEKQLCQSCILNVAIFSSPLFRVFPSPPLIF FFFSVCNPK" mobile_element 1313776..1313910 /note="source:scaffold_10_CACTA_0141 4089 4225" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1313948..1314241) /note="source:scaffold_10_CACTA_0141 4023 4309" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1314269..1314449) /note="source:scaffold_10_CACTA_0141 2882 3056" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1314468..1314836) /note="source:CACAO_Mariner_E176_scaffold_6 3724 4103" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 1315732..1315774 /note="source:CACAO_M_S_E51599_F192_scaffold_4 6782 6829" /mobile_element_type="retrotransposon:LTR/Copia" gene 1317774..1318330 /locus_tag="TCM_042588" /note="dbxref CacaoGD:Thecc1EG042588" mRNA 1317774..1318330 /locus_tag="TCM_042588" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g011850.1.2" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc378t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc17t80" CDS 1317941..1318174 /locus_tag="TCM_042588" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17882.1" /translation="MYPIRRMHKMHGVPREKPVIKGTRSTHGKPWNILIFFLNDRQPF EQCVKIIPHQIIQVKLDFRHLTFRSTAILRHAL" gene complement(1320697..1321380) /locus_tag="TCM_042589" /note="dbxref CacaoGD:Thecc1EG042589" mRNA complement(1320697..1321380) /locus_tag="TCM_042589" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.21 coverage" mobile_element complement(1320697..1320820) /note="source:scaffold_10_CACTA_0141 4023 4141" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1320848..1320948) /note="source:scaffold_10_CACTA_0141 2946 3056" /mobile_element_type="transposon:TIR/CACTA" CDS complement(1320896..1321135) /locus_tag="TCM_042589" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17883.1" /translation="MEQSVEGCRPLWLVLFEEKLLLEGVRSRTKICRPLFSLGTVPDE LGRLKNVRILHNQFTSFSELFCMMSWEDWKLSQAI" mobile_element complement(1320964..1320995) /note="source:scaffold_10_CACTA_0141 3501 3532" /mobile_element_type="transposon:TIR/CACTA" gene complement(1322258..1324350) /locus_tag="TCM_042590" /note="dbxref CacaoGD:Thecc1EG042590" mRNA complement(join(1322258..1322932,1323035..1323295, 1323381..1323779,1323906..1324350)) /locus_tag="TCM_042590" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g38960.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042587t1" /inference="similar to AA sequence:ricco:29634.m002097" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00504t00004" mRNA complement(join(1322341..1323295,1323381..1323779, 1323906..1324005)) /locus_tag="TCM_042590" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g38960.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042587t1" /inference="similar to AA sequence:ricco:29634.m002097" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00504t00002; inference alignment:Newbler:10:TSA:cgbaL_g00504t00004" mRNA complement(join(1322341..1322932,1323026..1323295, 1323381..1323882)) /locus_tag="TCM_042590" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g38960.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042587t1" /inference="similar to AA sequence:ricco:29656.m000471" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00504t00003; inference alignment:Newbler:10:TSA:cgbaL_g00504t00004" mRNA complement(join(1322376..1322932,1323026..1323295, 1323381..1323779,1323906..1324344)) /locus_tag="TCM_042590" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g38960.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042587t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018900001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00005t00001; inference alignment:Newbler:10:TSA:cgbaL_g00504t00004" CDS complement(join(1322585..1322932,1323035..1323295, 1323381..1323779,1323906..1323983)) /locus_tag="TCM_042590" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29634.m002097; paralog of Thecc1EG042587t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY17884.1" /db_xref="TAIR:AT3G11480.1" /translation="MEAVKDVLCMNNGVGENSYVKAEALTIKVMAITKPIVPKAVQSL FTETDHSIPLQVVNVADLGCAVGPQPLEFMSTVIESILKKCGEMGREMPEIQFFLNDL VGNDFNTLFKGLSVVQEKYKKVSWFAMGAPGSFHGRLFPRNSMHLVYSCYSVHWLSEA PKITNEAGLPLNKGKIYMSKTSPPAVTKAYLSQFQEDFSSLLKFRSQELAPNGRVVLI FNGRQTADPTNKDTCYTWDLLAEALSYLGLVDEGKLDSFNVPYYNPSQEEIKYLVDKE GSLTIEFIDTIELEIGGPNGYWSSPESRIRGHRCFTEPLLSHQFGERLMDKLYDKATQ ILVEDYKHGKEATKNIGIAVVLKKKKL" CDS complement(join(1322585..1322932,1323026..1323295, 1323381..1323779,1323906..1323983)) /locus_tag="TCM_042590" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042587t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /protein_id="EOY17885.1" /db_xref="Phytozome:GSVIVT01018900001" /db_xref="TAIR:AT5G04370.1" /translation="MEAVKDVLCMNNGVGENSYVKAEALTIKVMAITKPIVPKAVQSL FTETDHSIPLQVVNVADLGCAVGPQPLEFMSTVIESILKKCGEMGREMPEIQFFLNDL VGNDFNTLFKGLSVVQEKYKKVSWFAMGAPGSFHGRLFPRNSMHLVYSCYSVHWLSEA PKITNEAGLPLNKGKIYMSKTSPPAVTKAYLSQFQEDFSSLLKFRSQELAPNGRVVLI FNGRQTADPTNKDTCYTWDLLAEALSYLVSQGLVDEGKLDSFNVPYYNPSQEEIKYLV DKEGSLTIEFIDTIELEIGGPNGYWSSPESRIRGHRCFTEPLLSHQFGERLMDKLYDK ATQILVEDYKHGKEATKNIGIAVVLKKKKL" CDS complement(join(1322585..1322932,1323026..1323295, 1323381..1323770)) /locus_tag="TCM_042590" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29656.m000471; paralog of Thecc1EG042587t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 4" /protein_id="EOY17887.1" /db_xref="TAIR:AT5G04370.1" /translation="MAITKPIVPKAVQSLFTETDHSIPLQVVNVADLGCAVGPQPLEF MSTVIESILKKCGEMGREMPEIQFFLNDLVGNDFNTLFKGLSVVQEKYKKVSWFAMGA PGSFHGRLFPRNSMHLVYSCYSVHWLSEAPKITNEAGLPLNKGKIYMSKTSPPAVTKA YLSQFQEDFSSLLKFRSQELAPNGRVVLIFNGRQTADPTNKDTCYTWDLLAEALSYLV SQGLVDEGKLDSFNVPYYNPSQEEIKYLVDKEGSLTIEFIDTIELEIGGPNGYWSSPE SRIRGHRCFTEPLLSHQFGERLMDKLYDKATQILVEDYKHGKEATKNIGIAVVLKKKK L" mobile_element complement(1322821..1322960) /note="source:scaffold_10_CACTA_0141 5405 5545" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(1322990..1323295,1323381..1323779, 1323906..1323983)) /locus_tag="TCM_042590" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29634.m002097; paralog of Thecc1EG042587t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 3" /protein_id="EOY17886.1" /db_xref="TAIR:AT5G04370.1" /translation="MEAVKDVLCMNNGVGENSYVKAEALTIKVMAITKPIVPKAVQSL FTETDHSIPLQVVNVADLGCAVGPQPLEFMSTVIESILKKCGEMGREMPEIQFFLNDL VGNDFNTLFKGLSVVQEKYKKVSWFAMGAPGSFHGRLFPRNSMHLVYSCYSVHWLSEA PKITNEAGLPLNKGKIYMSKTSPPAVTKAYLSQFQEDFSSLLKFRSQELAPNGRVVLI FNGRQTADPTNKDTCYTWDLLAEALSYLVSQAKCQIFNSFLI" mobile_element complement(1323004..1324109) /note="source:scaffold_10_CACTA_0141 2934 5062" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1324128..1324174 /note="source:scaffold_10_CACTA_0141 3981 4027" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1324192..1324251) /note="source:scaffold_10_CACTA_0141 3473 3532" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1324275..1324343 /note="source:scaffold_10_CACTA_0141 2879 2947" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1324339..1324603) /note="source:scaffold_10_CACTA_0141 3116 3383" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1324952..1325261) /note="source:scaffold_10_CACTA_0141 2877 3079" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1326641..1327757) /note="source:CACAO_Again_on_E207_scaffold_9 708 1862" /mobile_element_type="transposon:TIR/hAT" mobile_element 1326941..1328116 /note="source:CACAO_Again_on_E108_scaffold_4 231 1753" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(1327851..1328163) /note="source:CACAO_Again_on_E207_scaffold_9 1 314" /mobile_element_type="transposon:TIR/hAT" gene complement(1328972..1330648) /locus_tag="TCM_042591" /note="dbxref CacaoGD:Thecc1EG042591" mRNA complement(join(1328972..1329307,1330253..1330321, 1330393..1330648)) /locus_tag="TCM_042591" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15328t00001" CDS complement(1328990..1329232) /locus_tag="TCM_042591" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY17888.1" /translation="MIRLDDPAVSNLAASYDSKAVSRALFLHFKKHHQTKIHYVILQE MLKLRLWVPFSLCHVKSFMLLPNQMVLSAKTILCFS" mRNA complement(join(<1329021..1329307,1330393..1330557)) /locus_tag="TCM_042591" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog medium, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1541t1; inference alignment:Newbler:10:TSA:cgbaB_g15328t00001" CDS complement(<1329023..1329232) /locus_tag="TCM_042591" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY17889.1" /translation="MIRLDDPAVSNLAASYDSKAVSRALFLHFKKHHQTKIHYVILQE MLKLRLWVPFSLCHVKSFMLLPNQMV" gene 1331167..1333811 /locus_tag="TCM_042592" /note="dbxref CacaoGD:Thecc1EG042592" mRNA join(1331167..1331410,1331860..1331939,1332194..1332423, 1332870..1332991,1333065..1333178,1333427..1333811) /locus_tag="TCM_042592" /product="Eukaryotic translation initiation factor 3 subunit F isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT2G39990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021344t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19940.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11414t00001" CDS join(1331186..1331410,1331860..1331939,1332194..1332423, 1332870..1332991,1333065..1333178,1333427..1333516) /locus_tag="TCM_042592" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021344t1" /codon_start=1 /product="Eukaryotic translation initiation factor 3 subunit F isoform 1" /protein_id="EOY17890.1" /db_xref="Phytozome:POPTR_0010s19940.1" /db_xref="TAIR:AT2G39990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04202" /translation="MAASEHTVLQFNAPSTVSLSAKVRPLVIFNICDCYVRRPDQAER VIGTLLGSVLPDGTVDIRNSYAVPHTESSEQVALDIEYHHNMLVSHQKVNPKEVIVGW YSTGLGVTGGSALIHDFYSREVPNPVHLTVDTGFRNGEGTIKAYVSVNLSLGDLQLAA QFQEIPLDLRMVEAERLGFDILKTTAVDKLPNDLEGMEVTMERLLALIDDVYKYVDDV VEGRVAADNSIGRFIADTVASLPKLSPPAFDKLVNDSLQDELLLLYLSSITRTQLGLA EKLNTAAQVL" mRNA join(<1331315..1331410,1331860..1331939,1332194..1332423, 1332870..1332995,1333069..>1333179) /locus_tag="TCM_042592" /product="Eukaryotic translation initiation factor 2 isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT2G39990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021344t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19940.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is weak, protein is partial; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7640t5; inference alignment:Newbler:10:TSA:cgbaL_g11414t00001" CDS join(<1331315..1331410,1331860..1331939,1332194..1332423, 1332870..1332995,1333069..>1333178) /locus_tag="TCM_042592" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021344t1" /codon_start=1 /product="Eukaryotic translation initiation factor 2 isoform 2" /protein_id="EOY17891.1" /db_xref="Phytozome:POPTR_0010s19940.1" /db_xref="TAIR:AT2G39990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04202" /translation="RVIGTLLGSVLPDGTVDIRNSYAVPHTESSEQVALDIEYHHNML VSHQKVNPKEVIVGWYSTGLGVTGGSALIHDFYSREVPNPVHLTVDTGFRNGEGTIKA YVSVNLSLGDLQLAAQFQEIPLDLRMVEAERLGFDILKTTAVDKLPNDLEGMEVTMER LLALIDDVYKYVDDVVVGRVAADNSIGRFIADTVASLPKLSPPAFDKLVNDSLQ" mobile_element 1335002..1335050 /note="source:CACAO_PIF_E144_scaffold_10 5994 6042" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 1337357..1338330 /locus_tag="TCM_042593" /note="dbxref CacaoGD:Thecc1EG042593" mRNA join(1337357..1337804,1337893..1338330) /locus_tag="TCM_042593" /product="WUSCHEL related homeobox 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016360001" /inference="similar to AA sequence:Phytozome:POPTR_0010s19950.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(1337450..1337804,1337893..1338131) /locus_tag="TCM_042593" /codon_start=1 /product="WUSCHEL related homeobox 5" /protein_id="EOY17892.1" /db_xref="Phytozome:POPTR_0010s19950.1" /db_xref="TAIR:AT3G11260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT00" /translation="MDDGLSGFCIKAGSVRGNGNNGSGGGGGGGGGTKCGRWNPTTEQ VKVLTDLFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSM DENDFICRDNRISSSKRFFEVNHHHDQVKGCQPERVIETLQLFPLNSFEESDHQQEKH LRFHASDQCRETATFPYKISTPETDHHPPLDLRLSFL" gene 1339997..1343209 /locus_tag="TCM_042594" /note="dbxref CacaoGD:Thecc1EG042594" mRNA join(1339997..1340332,1341131..1341223,1341307..1341388, 1341474..1341570,1341676..1341751,1341877..1342058, 1342235..1342292,1342411..1342496,1342796..1343209) /locus_tag="TCM_042594" /product="RP non-ATPase subunit 8A" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033994001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021739t1" /inference="similar to AA sequence:Phytozome:Glyma11g34980.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09499t00001" CDS join(1340146..1340332,1341131..1341223,1341307..1341388, 1341474..1341570,1341676..1341751,1341877..1342058, 1342235..1342292,1342411..1342496,1342796..1342867) /locus_tag="TCM_042594" /note="paralog of Thecc1EG021739t1" /codon_start=1 /product="RP non-ATPase subunit 8A" /protein_id="EOY17893.1" /db_xref="Phytozome:Glyma11g34980.1" /db_xref="TAIR:AT5G05780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O24412" /translation="MDVITTQEISSRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVG VLLGSSFKGSVDVTNSYAVPFEEDEKDPSIWFLDHNYHESMFAMFKRINAKEHVVGWY STGPKLRENDLDIHGLFNDYVSNPVLVIIDVQPKELGIPTKAYCAVEEVKENATQKSQ KVFVHVPSEIAAHEVEEIGVEHLLRDVKDTNISTLATEVTGKLTALKGLDGRLQEIRS YLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVGELIKAFAVKTNDMMLVIYLSSLIRS VIAHHNVINNKILNNEHEKAEDSKPVALSASAGT" gene complement(1343506..1345590) /locus_tag="TCM_042595" /note="dbxref CacaoGD:Thecc1EG042595" mRNA complement(1343506..1345590) /locus_tag="TCM_042595" /product="HXXXD-type acyl-transferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042596t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06520.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1318t1" CDS complement(1344089..1345528) /locus_tag="TCM_042595" /note="paralog of Thecc1EG042596t1" /codon_start=1 /product="HXXXD-type acyl-transferase family protein" /protein_id="EOY17894.1" /db_xref="Phytozome:POPTR_0008s06520.1" /db_xref="TAIR:AT2G39980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04201" /translation="MPSSAPCIALVSKSNVFPDQKSKLGELKLSVSDLPMLSCHYIQK GCLFTRSPIPIDSLVSLLKQSLSKTLSFFPPLAGRLHTDPNGYIYVTCNDGGVEFYHA TCKGLSIRDVIGPLDVPEFVKKFFCFDKTVSYQGHFKPIMAVQVTELGDGVFIGCSVN HAVTDGTSFWNFFNTFAELCKKISSNNQNFEKIARQPDFSRNSVLVSPAVLKVPEGGP KVTFNEKERLRERIFSFSREAILELKARVNNNEEELLVNGNFNAVEILGKQSNDKYHN EKSKSRLFRTAPVSNTAEISSFQSLCALLWRAVTRARKLPSFQKTTFRMAVNCRHRLN PKLDPLYFGNAIQSIPTYASAGDVTSRELRWCAEQLNQSVRSHDDETVRRFVKEWEKD PRCFPLGNFDGASMTMGSSPRFPMYDNDFGWGRPLVVRSGGANKFDGKISAFPGREGN GSVDLEVVLAPETMAGIESDHEFMQYVTN" gene complement(1346081..1354932) /locus_tag="TCM_042596" /note="dbxref CacaoGD:Thecc1EG042596" mRNA complement(join(1346081..1346335,1353145..1354932)) /locus_tag="TCM_042596" /product="HXXXD-type acyl-transferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06520.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042595t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06520.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1318t2" mobile_element complement(1348410..1349380) /note="source:scaffold_9_CACTA_0934 13886 14869" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1349427..1350949 /note="source:CACAO_hAT_E410_scaffold_1 1115 2372" /mobile_element_type="transposon:TIR/hAT" mobile_element 1350630..1351059 /note="source:scaffold_5_CACTA_0607 4422 4843" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1351042..1351094 /note="source:CACAO_M_E1149_F297_scaffold_1 1078 1128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1353049..1353165 /note="source:scaffold_4_CACTA_0483 1014 1127" /mobile_element_type="transposon:TIR/CACTA" CDS complement(1353414..1354874) /locus_tag="TCM_042596" /note="paralog of Thecc1EG042595t1" /codon_start=1 /product="HXXXD-type acyl-transferase family protein" /protein_id="EOY17895.1" /db_xref="Phytozome:POPTR_0008s06520.1" /db_xref="TAIR:AT2G39980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04201" /translation="MPSSPLVLVSKSTVFPDRKSNLGELKLSVSDLPMLSCHYIQKGC LFTLPPVPIDSLVSLLKQSLSKTLSFFSPLAGRLHTDQNGYIYVSCNDAGVEFHHSKC ATRFVRDVIGPIHVPELVKEFFCFDKTVSYQGHYKPIMAVQVTELADGFFIGCSVNHA VVDGTSFWNFFNTFAEICRKISTANDDRSVEKIARQPDFSRDSALISSAILRVPEGGP RVTFNENEPLRERIFSFSREAILELKAKVNNTKEDLLVNGNFNAVEILGKQSNDKYHN DNGKNLTGIFEKWLFKTTAISDSVEISSFQSLCALLWRAVTRARKLPYSKTTTFRMAV NCRHRLNPKLDPLYFGNAIQSIPTYATAGEVTSRGLRWCAEQLNESVKAHDDETVRRF IGNWEKDPRCFPLGNFDGASMTMGSSPRFPMYDNDFGWGRPLAVRSGGANKFDGKISA FPGREGNGSVDLEVVLAPETMAGIESDHEFMQFVTN" mobile_element complement(1359488..1359543) /note="source:scaffold_9_CACTA_0936 4279 4332" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1359497..1359542) /note="source:CACAO_M_E13172_F96_scaffold_3 702 740" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1359543..1359558 /note="source:scaffold_3_CACTA_0393 994 1060" /mobile_element_type="transposon:TIR/CACTA" gene complement(1359679..1368591) /locus_tag="TCM_042597" /note="dbxref CacaoGD:Thecc1EG042597" mRNA complement(join(1359679..1359720,1367261..1368591)) /locus_tag="TCM_042597" /product="Calcium-dependent lipid-binding family protein" /inference="alignment:exonerate- protein:2:ricco:29669.m000798" /inference="similar to AA sequence:ricco:29669.m000798" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1374t1" CDS complement(1367489..1368436) /locus_tag="TCM_042597" /note="dbxref ricco:29669.m000798" /codon_start=1 /product="Calcium-dependent lipid-binding family protein" /protein_id="EOY17896.1" /db_xref="TAIR:AT1G07310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHL3" /translation="MAASSRPPPPRLLDLDLTIVSAKHLKNVNWRNGDLKPYAVFWVN PDRRLSTRSDDSGSTRPVWNERFTLPLAVPLYDAVLTLEIFHSKPSETPKPLVGTLRV ELKELPDPEDGSKIRTFSVLRPSGRPQGKIRVKLGIRERPLAPPHDYHFAPPSYYYTN TPPPPRYSPYVSLPPPPPPQAASPPPPPPPPQPSASPPPPPSYSSIPDAYSPYFSSHY YSSPPPPMPPRPFFERSYGYGTPSAPVDYSPYDWKPRGGSKIGLGTGLAVGAVAGALG GLALEEGLKYEEDKIGERVEQDVASKERDDYSDYHRPDY" gene complement(1369049..1370308) /locus_tag="TCM_042598" /note="dbxref CacaoGD:Thecc1EG042598" mRNA complement(join(1369049..1369713,1370186..1370308)) /locus_tag="TCM_042598" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s19440.1" /inference="similar to AA sequence:Phytozome:POPTR_0018s11190.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc9418t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc842t1" CDS complement(join(1369174..1369713,1370186..1370212)) /locus_tag="TCM_042598" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17897.1" /db_xref="Phytozome:POPTR_0018s11190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IMA2" /translation="MVESSQNLWIGRENRVEQVKRLYPPSFIRNFRKEEPDVKRDYIL ILIIHSTEGIDPPSQYPGVTSRNYRVFASIQPGTQYLTEEAGGYPDVIWNERFDIPLK NRVPLQSNFLSLEVIRVPSKCDPGPSRGVVVVGRAKVPFPKEIGKRQCNRLGLARFVE GAVLGEGHITVSMILVENLRHTAELVGN" mobile_element complement(1369924..1370013) /note="source:scaffold_4_CACTA_0510 5760 5853" /mobile_element_type="transposon:TIR/CACTA" gene 1372444..1377043 /locus_tag="TCM_042599" /note="dbxref CacaoGD:Thecc1EG042599" mRNA join(1372444..1372741,1372849..1372926,1373276..1373350, 1374079..1374209,1374401..1374455,1374881..1374991, 1375395..1375463,1375531..1375638,1375764..1375832, 1376081..1376135,1376442..1377043) /locus_tag="TCM_042599" /product="Peroxisomal membrane protein pmp34, putative" /inference="alignment:exonerate-protein:2:frave:gene20918" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045615t1" /inference="similar to AA sequence:ricco:29669.m000796" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14443t00001" CDS join(1372661..1372741,1372849..1372926,1373276..1373350, 1374079..1374209,1374401..1374455,1374881..1374991, 1375395..1375463,1375531..1375638,1375764..1375832, 1376081..1376135,1376442..1376635) /locus_tag="TCM_042599" /note="dbxref ricco:29669.m000796; paralog of Thecc1EG045615t1" /codon_start=1 /product="Peroxisomal membrane protein pmp34, putative" /protein_id="EOY17898.1" /db_xref="TAIR:AT2G39970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SLI5" /translation="MSDALINGLAGAGGGIIAQLITYPLQTVNTRQQTERDLKKEKRK LGTIQQMSQVVNQEGWERLYGGLTPSLVGTAASQGVYYYFYQIFRNKAEATALERQKK GIGDGSVGVLSSLIVAALSGCVNVLLTTPIWVIVTRMQTHKKILKKDHSNRSTTTAVE ETVLSVIEPLPYGTSHAIQEVYDEAGFWGFWKGVFPSLIMVSNPSIQFMLYETMLKKL KKRRSLRKKGNNGITALEIFLLGALAKLGATAVTYPVLVVKSRLQAKQVTTGDRRHHY KGTLDAILKMIRYEGFSGFYKGMRTKIAQSVLAAAVLFMVKEELVRGARLLLIKGGIN TVKSKPP" gene 1377352..1380082 /locus_tag="TCM_042600" /note="dbxref CacaoGD:Thecc1EG042600" mRNA join(1377352..1377523,1377651..1377802,1378570..1378651, 1379545..1379687,1379778..1380082) /locus_tag="TCM_042600" /product="Microsomal signal peptidase 25 kDa subunit (SPC25)" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06490.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06490.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07519t00001" CDS join(1377422..1377523,1377651..1377802,1378570..1378651, 1379545..1379687,1379778..1379874) /locus_tag="TCM_042600" /codon_start=1 /product="Microsomal signal peptidase 25 kDa subunit (SPC25)" /protein_id="EOY17899.1" /db_xref="Phytozome:POPTR_0008s06490.1" /db_xref="TAIR:AT2G39960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P58684" /translation="MQEKKAETGTKNAKKANLLDHHSIKHILDESVSEIVTSRGYVED VRMSNVRLLLGTIIIVIALFAQFYKKKFPENRDFLIGCIVLYIVFNGLLQLIIYTKEK NAILFTYPPAGSVTSTGLVVSSKLPRFSDLYTLSIASADPKSISAGRPVEFTKSVTQW FTKDGVLVEGLFWKDVEALINDYAAEPKKKK" gene 1380437..1386959 /locus_tag="TCM_042601" /note="dbxref CacaoGD:Thecc1EG042601" mRNA join(1380437..1380828,1381678..1382065,1382229..1382344, 1384578..1384821,1384993..1386959) /locus_tag="TCM_042601" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20020.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06470.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09459t00001" CDS join(1380728..1380828,1381678..1382065,1382229..1382344, 1384578..1384821,1384993..1386357) /locus_tag="TCM_042601" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17900.1" /db_xref="Phytozome:POPTR_0008s06470.1" /db_xref="TAIR:AT2G39950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT07" /translation="MSHRHHGNLTKAQTQNKMTSMLWQMHMSQVINSRMSNSRNREFV DDHVDQNGDESFDSSDASSSMNGVVETSSVGSGTTSRQIGEIRNEIGLTERLTNIFVE ENDGDLLLQQSDREDRVLQWLQALDMQVIGACRTDERLKPLLKVNVSNGLAEDRLLAH LSQHFEPSEVGMLARCFCIPLVSIRVGKINKQGTHFCPTAIRGNLSLTLLPTSDLRLL FVGDNGQTEQLFTLSCKLQCPGVSINEIPADNSGRSFLVKIPDGKVFYYWCSEKSKLL GVELLSKMKDLIKRKPSIAELTGISESRLGCFAVQLRAYLLGSAVSNTQASCSGSRSP NTLLDTIDVHNGQSSSTTSKSLRSRHSSSQVLKVNSLHQGSLSPRSSSFKEGLARNLS SLRSTARDKIRRRGDNHLSVSESLTTASPITHDSLSCNQAENDKLPDVKSCPFTPNLL ESLGKLAVPPTLSSVSQVSSLGPPLFSPHYCWCPPGSSTLQHSAAAEFPTSSIESLKL PPLSSILPANGASSLLKPTPPLDLADVPSLDFPAFLPEPLVRLPMASSQQIPTFTPLI CDPIVHIPVIDVCSSGQGYLVSAGPTISTTISPLHPKLVNPLLPDTDSMVEKGARETL RLLISGSTQNNPPLIDVFPAVLTNADENKGILVAGSRGLYSGTRDISAITDGIAAMTF VTLSASSMGDCFVKHCSSGCDNPDSKQVGSSGSDESCSDRDGAKLTDTREEGTSD" mobile_element 1387445..1387515 /note="source:MITE_CACTA_25 122 188" /mobile_element_type="transposon:TIR/MITE" mobile_element 1392388..1392506 /note="source:CACAO_Helitron_E81_scaffold_3 1814 1932" /mobile_element_type="transposon:Helitron" gene 1395039..1399573 /locus_tag="TCM_042602" /note="dbxref CacaoGD:Thecc1EG042602" mRNA join(1395039..1395921,1397482..1397953,1398374..1399573) /locus_tag="TCM_042602" /product="RNI-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016368001" /inference="similar to AA sequence:Phytozome:GSVIVT01016368001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg842t2" CDS join(1395425..1395921,1397482..1397953,1398374..1399186) /locus_tag="TCM_042602" /codon_start=1 /product="RNI-like superfamily protein" /protein_id="EOY17901.1" /db_xref="Phytozome:GSVIVT01016368001" /db_xref="TAIR:AT2G39940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04197" /translation="MEENDNKMNKTMTSPVGMSDVVLGCVMPYIHDPKDRDAVSLVCR RWYELDALTRKHITIALCYTTSPDRLRRRFQHLESLKLKGKPRAAMFNLIPEDWGGYV TPWVNEIAENFNCLKSLHFRRMIVKDSDLEVLARSRGKVLQVLKLDKCSGFSTDGLLH VGRSCRQLKTLFLEESLIVEKDGQWLHELAVNNSVMETLNFYMTDLVKVSFEDLELIA RNCRNLASVKISDCEILDLVGFFPAAAVLEEFCGGSFNEQPDRYYAVSFPPKLCRLGL TYMGKNEMPIVFPFASLLKKLDLLYALLDTEDHCLLIQRCPNLEVLETRNVIGDRGLE VLARSCKRLKRLRIERGADEQGMEDEEGVVSQRGLMALAQGCLELEYLAVYVSDITNA SLEYIGTYSKNLSDFRLVLLDREERITDLPLDNGVRALLRGCEKLRRFALYLRPGGLT DVGLSYIGQYSPNVRWMLLGYVGESDAGLLEFSKGCPSLQKLEMRGCCFSEHALAVTV MQLTSLRYLWVQGYRASQSGRDLLAMARPFWNIELIPARRVVMNDQVGEAVVVEHPAH ILAYYSLAGPRTDFPETVIPLDPLVAA" gene complement(1400170..1404072) /locus_tag="TCM_042603" /note="dbxref CacaoGD:Thecc1EG042603" mRNA complement(join(1400170..1401157,1402727..1402899, 1403319..1403949,1404051..1404072)) /locus_tag="TCM_042603" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.71 coverage" CDS complement(join(1401071..1401157,1402727..1402899, 1403319..1403490)) /locus_tag="TCM_042603" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17902.1" /translation="MLTFSLTLREYVSLFFFLFFSFFFSLMGTGKNMIFTFFFFHMSS NPSEILPYGLEELCRQIGIPQMKKLFTVFVFFSICHCGIYSYTPPLLYCAAAAVATMM KGQPSALPMSHLHHSSRMVSPQLEMLLTSNHLLLGKKHQTG" gene complement(1403798..1406212) /locus_tag="TCM_042604" /note="dbxref CacaoGD:Thecc1EG042604" mRNA complement(join(1403798..1405172,1405526..1406212)) /locus_tag="TCM_042604" /product="Duplicated homeodomain-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g06750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041672t1" /inference="similar to AA sequence:Phytozome:Glyma14g06750.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12332t00001" CDS complement(join(1404713..1405172,1405526..1405917)) /locus_tag="TCM_042604" /note="paralog of Thecc1EG041672t1" /codon_start=1 /product="Duplicated homeodomain-like superfamily protein" /protein_id="EOY17903.1" /db_xref="Phytozome:Glyma14g06750.1" /db_xref="TAIR:AT5G05790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT09" /translation="METLFATSFMSNSDWFDQESNSTSWTKEENKMFESALAIYDDDV PDRWFKVAAMIPGKTVSDVMKQYRELEEDVFKIEAGRFPMPGYCSSSFTLELVDNRDF DAYRKRSTGTRGPDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVSKTPTQ VASHAQKYYQRQLSGGKDKRRPSIHDITTVNLTNTTFSDNHKPPSVNHSNVLALQQKL ASMPKVGNNWNHPNDGSAMAFNSTHGNWFTSSQYQTASNGLRLQGQNLYGSAYHGAHI KPQSSVF" gene complement(1407095..1413874) /locus_tag="TCM_042605" /note="dbxref CacaoGD:Thecc1EG042605" mRNA complement(join(1407095..1407723,1408050..1408970, 1409163..1409291,1409390..1409634,1409750..1409901, 1410548..1410793,1413797..1413874)) /locus_tag="TCM_042605" /product="Laccase/Diphenol oxidase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021754t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20050.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10609t4_C2" CDS complement(join(1407593..1407723,1408050..1408970, 1409163..1409291,1409390..1409634,1409750..1409901, 1410548..1410634)) /locus_tag="TCM_042605" /note="paralog of Thecc1EG021754t1" /codon_start=1 /product="Laccase/Diphenol oxidase family protein" /protein_id="EOY17904.1" /db_xref="Phytozome:POPTR_0010s20050.1" /db_xref="TAIR:AT2G38080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIE4" /translation="MVSWVQTLLFMSALFPVLVECKIRHYNFTVVLKNTTRLCATKPI VTVNGQFPGPTLYAREGDNVLARVTNHVQHNVTIHWHGVRQLRTGWSDGPAYITQCPI QPGQNFLYNFTVTGQRGTLLWHAHISWLRSTMHGAIVILPKKGVPYPFPKPYKEKVII LGEWWKADTEAVVNQAMQTGLAPNVSDAHTINGHAGPLANCSSEGAYTLHVETGKTYL LRVVNAAVNEELFFKIAGHNLTVVEVDAVYTKPYKTDTLFLGPGQTTTSLLTADQGIG KYLIAVSPFMDTIVAVDNLTAVGFLRYNHTLAFTPTTLTSIPPVNATSVTEVFSKSLR SLNSKEYPANVPLTIDHSLFFTIGIGINPCATCVNGSRAVAAINNVTFDMPTTALLQA HYYGISGVFTDDFPAKPLIPFNYTGTPPSSLQTMNGTRVYRLAYNSTVQLIIQGNSII APESHPTHLHGFNFFAVGRGVGNFDPEKDPLKFNLVDPVERNTISVPTAGWTAIRFRA DNPGVWFFHCHLEVHTTWGLKMAFLVENGKGPNESLIPPPSDLPQC" gene complement(1412524..1413897) /locus_tag="TCM_042606" /note="dbxref CacaoGD:Thecc1EG042606" mRNA complement(join(1412524..1413171,1413797..1413897)) /locus_tag="TCM_042606" /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29610.m000408" /inference="similar to AA sequence:Phytozome:POPTR_0008s06420.1" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS complement(join(1412683..1413171,1413797..1413838)) /locus_tag="TCM_042606" /codon_start=1 /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /protein_id="EOY17905.1" /db_xref="Phytozome:POPTR_0008s06420.1" /translation="MNIVTDKVSFFIPQAGETGQRKWHGSVSGIVDSPLDKVWTIVSQ TKRLSEWMPMVERCTDLAGDEGIPGYVRLVSGFMFPQQDGERSWIKERLAAMDPTSHS YVYKMEASNVGLDGSVNSLKFIDYGDDSTLVNWSFEIDPLEGALEDNIIDYLGFLYKS CINTIQGAIVAASKKV" gene complement(1413947..1417037) /locus_tag="TCM_042607" /note="dbxref CacaoGD:Thecc1EG042607" mRNA complement(join(1413947..1414691,1414783..1414854, 1414963..1415063,1415263..1415484,1415586..1415667, 1415989..1416174,1416281..1416400,1416695..1417037)) /locus_tag="TCM_042607" /product="Sedoheptulose-bisphosphatase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016373001" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400047117" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3932t2" CDS complement(join(1414410..1414691,1414783..1414854, 1414963..1415063,1415263..1415484,1415586..1415667, 1415989..1416174,1416281..1416400,1416695..1416808)) /locus_tag="TCM_042607" /codon_start=1 /product="Sedoheptulose-bisphosphatase" /protein_id="EOY17906.1" /db_xref="Phytozome:PGSC0003DMP400047117" /db_xref="TAIR:AT3G55800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P46283" /translation="METGVTCYARGIVLPSVSSKHSTALVSPPSISPPFSYRSLKTSS LLGESLRVVPRSSLKVSKTKSSSFVTRCEIGDSLEEFLTKATPDKGLIRLMMCMGEAL RTIAFKVRTASCGGTACVNSFGDEQLAVDLLANKLLFEALTYSHFCKYACSEEVPELQ DMGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVTGRDQVAAAMGIFG PRTTYVLALKDSPGTHEFLLLDEGKWQHVKDTTEIGEGKMFSPGNLRATSDNPEYDKL INYYVREKYTLRYTGGMVPDVNQIIVKEKGIFTNVASPSAKAKLRLLFEVAPLGFLIE KAGGYSSDGHRSVLDKLINNLDDRTQVAYGSKNEIIRFEETLNGSSRLKAGVPVGAAA " gene 1417446..1422138 /locus_tag="TCM_042608" /note="dbxref CacaoGD:Thecc1EG042608" mRNA join(1417446..1418073,1418360..1418512,1419049..1419264, 1419378..1419560,1419792..1420013,1420218..1420334, 1420426..1420569,1420911..1421012,1421333..1421401, 1421600..1422138) /locus_tag="TCM_042608" /product="L-Aspartase-like family protein" /inference="alignment:exonerate- protein:2:ricco:29610.m000406" /inference="similar to AA sequence:Phytozome:GSVIVT01016375001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc290t2_C2" CDS join(1417882..1418073,1418360..1418512,1419049..1419264, 1419378..1419560,1419792..1420013,1420218..1420334, 1420426..1420569,1420911..1421012,1421333..1421401, 1421600..1421845) /locus_tag="TCM_042608" /codon_start=1 /product="L-Aspartase-like family protein" /protein_id="EOY17907.1" /db_xref="Phytozome:GSVIVT01016375001" /db_xref="TAIR:AT1G36280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10MD1" /translation="MEARVSSGVLTKNQAPFLSPLQPRKVQSLRNLSALYNTKQTHQF SNASFQLSTISSCRSHGFRQVINMSGDNSCEVELSTLTALSPLDGRYWGKVKGLAPYM SEYGLIYFRVLVEIKWLLKLSQIPEVTEVPSFSAEAQSYLQGLIDGFSMDDALQVKQI ERVTNHDVKAVEYFLKQKCQSHSEIAKVLEFFHFACTSEDINNLAHALMLKEAMTKVM LPTMDKLIEAICEMAKANASIPMLSRTHGQPASPTTLGKEMAIFAVRLSRERQEISQV EMMGKFAGAVGNYNAHLVAYPNINWPQIAEEFVTSLGLKFNPYVTQIETHDYMAKLYY AIIRFNNILIDFDRDIWGYISVGYFKQITKAGEIGSSTMPHKVNPIDFENSEGNLGKA NEDLSYLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLS EDLNQAWEVLAEPIQTVMRRYGVPEPYEKLKELTRGRAVTKESIREFIEGLELPKEAK THLLKLTPHSYVGAAVELARTVDSTVNVINGTKVLETCS" gene 1422428..1425455 /locus_tag="TCM_042609" /note="dbxref CacaoGD:Thecc1EG042609" mRNA join(1422428..1422818,1423483..1423632,1423814..1424267, 1424354..1424551,1424635..1424705,1424944..1425455) /locus_tag="TCM_042609" /product="HAD superfamily, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20080.1" /inference="similar to AA sequence:frave:gene20908" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc444t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg965t1" mRNA join(1422428..1422818,1423483..1423628,1423814..1424267, 1424354..1424551,1424635..1424705,1424944..1425455) /locus_tag="TCM_042609" /product="HAD superfamily, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20080.1" /inference="similar to AA sequence:frave:gene20908" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc444t11; alternateUTRof:Thecc1EG042609t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg965t1" mRNA join(1422428..1422818,1423483..1423628,1423814..1424267, 1424354..1424529,1424635..1424705,1424944..1425455) /locus_tag="TCM_042609" /product="HAD superfamily, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20080.1" /inference="similar to AA sequence:frave:gene20908" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc444t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg965t1" mRNA join(1422519..1422998,1423244..1423628,1423814..1424267, 1424354..1424551,1424635..1424973) /locus_tag="TCM_042609" /product="HAD superfamily, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20080.1" /inference="similar to AA sequence:frave:gene20908" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg965t1" mRNA join(1422662..1422818,1423483..1423628,1423820..1424267, 1424354..1424551,1424635..1424705,1424944..1425203) /locus_tag="TCM_042609" /product="HAD superfamily, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20080.1" /inference="similar to AA sequence:frave:gene20908" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg965t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg965t1" mRNA join(1423218..1423367,1423483..1423628,1423814..1424267, 1424354..1424551,1424635..1424705,1424944..1425203) /locus_tag="TCM_042609" /product="HAD superfamily, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20080.1" /inference="similar to AA sequence:frave:gene20908" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg965t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg965t1" mRNA join(1423249..1423367,1423483..1423628,1423814..1424267, 1424354..1424529,1424635..1424918) /locus_tag="TCM_042609" /product="HAD superfamily, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20080.1" /inference="similar to AA sequence:frave:gene20908" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00385t00004_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg965t1" CDS join(1423559..1423628,1423814..1424267,1424354..1424551, 1424635..1424705,1424944..1425101) /locus_tag="TCM_042609" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene20908" /codon_start=1 /product="HAD superfamily, putative isoform 2" /protein_id="EOY17909.1" /db_xref="TAIR:AT2G39920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT14" /translation="MSAYGHQMERQFSAQSLLSRGDTGTEMGSRYLVESGFYMTSFAA TIFIAGLATVGVLLVTLLVTLAVMLQSCESRCKGVVEIEKSSDSYHYCNIFSLHGELN SLEANEVPPVCRSFAIQYIKGGQYERDFNFTMLMIESFLNTVSPSHDRLDVVLMDIDD ILASDPQYTNQLMHQFNQIGCCKPSDATCLKHLHTQELYRKLQSRGWPLILLSRKPVR QRNVTIEHLTSLGYTGWSSLIMRLDSEMEMDSREYFSRRRAAMEKEESDISNVIQNQS PPPPPFLIAAFNERNDLCYTGYYQPRYLSARLSGIGCRTP" CDS join(1423559..1423628,1423814..1424267,1424354..1424551, 1424635..1424705,1424944..1425101) /locus_tag="TCM_042609" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene20908" /codon_start=1 /product="HAD superfamily, putative isoform 2" /protein_id="EOY17910.1" /db_xref="TAIR:AT2G39920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT14" /translation="MSAYGHQMERQFSAQSLLSRGDTGTEMGSRYLVESGFYMTSFAA TIFIAGLATVGVLLVTLLVTLAVMLQSCESRCKGVVEIEKSSDSYHYCNIFSLHGELN SLEANEVPPVCRSFAIQYIKGGQYERDFNFTMLMIESFLNTVSPSHDRLDVVLMDIDD ILASDPQYTNQLMHQFNQIGCCKPSDATCLKHLHTQELYRKLQSRGWPLILLSRKPVR QRNVTIEHLTSLGYTGWSSLIMRLDSEMEMDSREYFSRRRAAMEKEESDISNVIQNQS PPPPPFLIAAFNERNDLCYTGYYQPRYLSARLSGIGCRTP" CDS join(1423559..1423628,1423820..1424267,1424354..1424551, 1424635..1424705,1424944..1425101) /locus_tag="TCM_042609" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene20908" /codon_start=1 /product="HAD superfamily, putative isoform 4" /protein_id="EOY17911.1" /db_xref="TAIR:AT2G39920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT14" /translation="MSAYGHQMERQFSAQSLLSRGDTEMGSRYLVESGFYMTSFAATI FIAGLATVGVLLVTLLVTLAVMLQSCESRCKGVVEIEKSSDSYHYCNIFSLHGELNSL EANEVPPVCRSFAIQYIKGGQYERDFNFTMLMIESFLNTVSPSHDRLDVVLMDIDDIL ASDPQYTNQLMHQFNQIGCCKPSDATCLKHLHTQELYRKLQSRGWPLILLSRKPVRQR NVTIEHLTSLGYTGWSSLIMRLDSEMEMDSREYFSRRRAAMEKEESDISNVIQNQSPP PPPFLIAAFNERNDLCYTGYYQPRYLSARLSGIGCRTP" CDS join(1423559..1423628,1423814..1424267,1424354..1424529, 1424635..1424705,1424944..1425000) /locus_tag="TCM_042609" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene20908" /codon_start=1 /product="HAD superfamily, putative isoform 5" /protein_id="EOY17912.1" /db_xref="TAIR:AT2G39920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT14" /translation="MSAYGHQMERQFSAQSLLSRGDTGTEMGSRYLVESGFYMTSFAA TIFIAGLATVGVLLVTLLVTLAVMLQSCESRCKGVVEIEKSSDSYHYCNIFSLHGELN SLEANEVPPVCRSFAIQYIKGGQYERDFNFTMLMIESFLNTVSPSHDRLDVVLMDIDD ILASDPQYTNQLMHQFNQIGCCKPSDATCLKHLHTQELYRKLQSRGWPLILLSRKPVR QRNVTIEHLTSLGYTGWIAKWKWIAVNTFLDEEQQWRKKNLISAMLFKTNPPPPPPF" CDS join(1423559..1423628,1423814..1424267,1424354..1424551, 1424635..1424845) /locus_tag="TCM_042609" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene20908" /codon_start=1 /product="HAD superfamily, putative isoform 1" /protein_id="EOY17908.1" /db_xref="TAIR:AT2G39920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT14" /translation="MSAYGHQMERQFSAQSLLSRGDTGTEMGSRYLVESGFYMTSFAA TIFIAGLATVGVLLVTLLVTLAVMLQSCESRCKGVVEIEKSSDSYHYCNIFSLHGELN SLEANEVPPVCRSFAIQYIKGGQYERDFNFTMLMIESFLNTVSPSHDRLDVVLMDIDD ILASDPQYTNQLMHQFNQIGCCKPSDATCLKHLHTQELYRKLQSRGWPLILLSRKPVR QRNVTIEHLTSLGYTGWSSLIMRLDSEMEMDSREYFSRRRAAMEKEGTRILSVISTQM DALTGSSLGRRVFKLPNPLFYNFENQVVNRRHSH" CDS join(1423559..1423628,1423814..1424267,1424354..1424529, 1424635..1424726) /locus_tag="TCM_042609" /note="encoded by transcript variant 6; alternatively spliced; dbxref frave:gene20908" /codon_start=1 /product="HAD superfamily, putative isoform 6" /protein_id="EOY17913.1" /db_xref="TAIR:AT2G39920.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT14" /translation="MSAYGHQMERQFSAQSLLSRGDTGTEMGSRYLVESGFYMTSFAA TIFIAGLATVGVLLVTLLVTLAVMLQSCESRCKGVVEIEKSSDSYHYCNIFSLHGELN SLEANEVPPVCRSFAIQYIKGGQYERDFNFTMLMIESFLNTVSPSHDRLDVVLMDIDD ILASDPQYTNQLMHQFNQIGCCKPSDATCLKHLHTQELYRKLQSRGWPLILLSRKPVR QRNVTIEHLTSLGYTGWIAKWKWIAVNTFLDEEQQWRKKVLGYLV" CDS join(1423822..1424267,1424354..1424551,1424635..1424705, 1424944..1425101) /locus_tag="TCM_042609" /note="encoded by transcript variant 7; alternatively spliced; dbxref frave:gene20908" /codon_start=1 /product="HAD superfamily, putative isoform 7" /protein_id="EOY17914.1" /db_xref="TAIR:AT2G39920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT14" /translation="MGSRYLVESGFYMTSFAATIFIAGLATVGVLLVTLLVTLAVMLQ SCESRCKGVVEIEKSSDSYHYCNIFSLHGELNSLEANEVPPVCRSFAIQYIKGGQYER DFNFTMLMIESFLNTVSPSHDRLDVVLMDIDDILASDPQYTNQLMHQFNQIGCCKPSD ATCLKHLHTQELYRKLQSRGWPLILLSRKPVRQRNVTIEHLTSLGYTGWSSLIMRLDS EMEMDSREYFSRRRAAMEKEESDISNVIQNQSPPPPPFLIAAFNERNDLCYTGYYQPR YLSARLSGIGCRTP" gene complement(1425026..1428017) /locus_tag="TCM_042611" /note="dbxref CacaoGD:Thecc1EG042611" mRNA complement(join(1425026..1425218,1425623..1425668, 1425875..1425948,1426437..1428017)) /locus_tag="TCM_042611" /product="Glucan endo-1,3-beta-glucosidase 2-beta-glucanase 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20090.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20090.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1224t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1775t1" CDS complement(join(1425113..1425218,1425623..1425668, 1425875..1425948,1426437..1427593)) /locus_tag="TCM_042611" /codon_start=1 /product="Glucan endo-1,3-beta-glucosidase 2-beta-glucanase 2, putative" /protein_id="EOY17915.1" /db_xref="Phytozome:POPTR_0010s20090.1" /db_xref="TAIR:AT3G55780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M046" /translation="MPSSLLLHLLFLSFLRFTSSVPPIGVTYSSVSTTTSTTVPPPPP PNKISTTISALKFTHVRLPDSDPSLIRSFAFTNTSLFLSIPNTFLPALASNRSHALRW LYRHVLPFYPRSKIALISVGNAVLDSTGEDFTPFLLPAIRNLHLALQELGINKIPIST TFSFFSTITTAFPPSSAQFQQPAGDLIIKPLLQFLQQTNSSFLINLYPYNLFRLNSEI PIGFALFQDYPFNFRDDLVTGVRYFNLFDMMADAVIAAMAVVGHENIPLIVAETGWPS GGGDAGEVEANGVYAEMYLKGLVGRLKSGVGTPLRKDGLAEVYVYELMDHDGVDKEKG RKWGILSENMTKKYNVEFSCGAKNFGLTGLLMVVVVVVGVFAASLNLGQWHLTSKVEA ILGIGEVDGLDLDGEGLMGAVTSKISNAVLLICRGIIAVICTRKVSLNFRICYKNKLA DRKSNLTSDI" mobile_element complement(1425210..1425281) /note="source:CACAO_M_E69780_F2_scaffold_9 1553 1621" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1429287..1430790 /note="source:scaffold_1_CACTA_0010 1458 3004" /mobile_element_type="transposon:TIR/CACTA" gene <1429344..1432298 /locus_tag="TCM_042613" /note="dbxref CacaoGD:Thecc1EG042613" mRNA join(1429344..1429374,1429873..1430103,1430517..1430616, 1430713..1430747,1430871..1430960,1431780..1432298) /locus_tag="TCM_042613" /product="GATA type zinc finger transcription factor family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29610.m000403" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016218t1" /inference="similar to AA sequence:ricco:29610.m000403" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc102t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc102t6" mRNA join(<1429344..1429374,1429993..1430103,1430517..1430616, 1430713..1430747,1430871..1430960,1431780..1432237) /locus_tag="TCM_042613" /product="GATA type zinc finger transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29610.m000403" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016218t1" /inference="similar to AA sequence:ricco:29610.m000403" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00007t00001_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc102t6" CDS join(<1429345..1429374,1429993..1430103,1430517..1430616, 1430713..1430747,1430871..1430960,1431780..1431989) /locus_tag="TCM_042613" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29610.m000403; paralog of Thecc1EG016218t1" /codon_start=1 /product="GATA type zinc finger transcription factor family protein isoform 2" /protein_id="EOY17917.1" /db_xref="TAIR:AT3G55770.5" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PII9" /translation="SGSFSSSSIKKCKACEKTVYPVELLSADGVPYHKSCFKCSHCKG TLKLGNYSSMEGVLYCKPHFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAASM FSGTQEKCATCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCPISPSNYAALEGILYCKH HFSQLFKEKGSYNHLIKSASIKRAAASVPEA" mRNA join(1429725..1430103,1430517..1430615,1430688..1430747, 1430871..1430960,1431780..1432051) /locus_tag="TCM_042613" /product="GATA type zinc finger transcription factor family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29610.m000403" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005377t1" /inference="similar to AA sequence:ricco:29610.m000403" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc995t40; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc102t6" mRNA join(1429762..1430103,1430517..1430616,1430713..1430747, 1430871..1430960,1431780..1432237) /locus_tag="TCM_042613" /product="GATA type zinc finger transcription factor family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29610.m000403" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016218t1" /inference="similar to AA sequence:ricco:29610.m000403" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00007t00003; alternateUTRof:Thecc1EG042613t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc102t6" CDS join(1429969..1430103,1430517..1430616,1430713..1430747, 1430871..1430960,1431780..1431989) /locus_tag="TCM_042613" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29610.m000403; paralog of Thecc1EG016218t1" /codon_start=1 /product="GATA type zinc finger transcription factor family protein isoform 1" /protein_id="EOY17916.1" /db_xref="TAIR:AT3G55770.5" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PII9" /translation="MSFTGTQQKCKACEKTVYPVELLSADGVPYHKSCFKCSHCKGTL KLGNYSSMEGVLYCKPHFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAASMFS GTQEKCATCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCPISPSNYAALEGILYCKHHF SQLFKEKGSYNHLIKSASIKRAAASVPEA" CDS join(1429969..1430103,1430517..1430616,1430713..1430747, 1430871..1430960,1431780..1431989) /locus_tag="TCM_042613" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29610.m000403; paralog of Thecc1EG016218t1" /codon_start=1 /product="GATA type zinc finger transcription factor family protein isoform 1" /protein_id="EOY17919.1" /db_xref="TAIR:AT3G55770.5" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PII9" /translation="MSFTGTQQKCKACEKTVYPVELLSADGVPYHKSCFKCSHCKGTL KLGNYSSMEGVLYCKPHFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAASMFS GTQEKCATCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCPISPSNYAALEGILYCKHHF SQLFKEKGSYNHLIKSASIKRAAASVPEA" CDS join(1429969..1430103,1430517..1430615,1430688..1430747, 1430871..1430960,1431780..1431989) /locus_tag="TCM_042613" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29610.m000403; paralog of Thecc1EG005377t1" /codon_start=1 /product="GATA type zinc finger transcription factor family protein isoform 3" /protein_id="EOY17918.1" /db_xref="TAIR:AT3G55770.5" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PII9" /translation="MSFTGTQQKCKACEKTVYPVELLSADGVPYHKSCFKCSHCKGTL KLGNYSSMEGVLYCKPHFEQLFKETGNFNKNFQSLSLILLSAAAKSAEKLTPELTRSP SKAASMFSGTQEKCATCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCPISPSNYAALEG ILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPEA" mRNA join(<1429990..1430103,1430517..1430616,1430713..1430747, 1430871..1430960,1431780..1431999) /locus_tag="TCM_042613" /product="GATA type zinc finger transcription factor family protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:29610.m000403" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016218t1" /inference="similar to AA sequence:ricco:29610.m000403" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc78t11; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc102t6" CDS join(<1429990..1430103,1430517..1430616,1430713..1430747, 1430871..1430960,1431780..1431989) /locus_tag="TCM_042613" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29610.m000403; paralog of Thecc1EG016218t1" /codon_start=1 /product="GATA type zinc finger transcription factor family protein isoform 5" /protein_id="EOY17920.1" /db_xref="TAIR:AT3G55770.5" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PII9" /translation="QKCKACEKTVYPVELLSADGVPYHKSCFKCSHCKGTLKLGNYSS MEGVLYCKPHFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCA TCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFSQLFKEK GSYNHLIKSASIKRAAASVPEA" gene 1432862..1436415 /locus_tag="TCM_042614" /note="dbxref CacaoGD:Thecc1EG042614" mRNA join(1432862..1432974,1433044..1433488,1433583..1433669, 1433773..1433963,1434446..1434641,1434772..1434836, 1435315..1435416,1435513..1435648,1435712..1436415) /locus_tag="TCM_042614" /product="ARM repeat superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29610.m000401" /inference="similar to AA sequence:Phytozome:POPTR_0008s06390.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05505t00001" CDS join(1432934..1432974,1433044..1433488,1433583..1433669, 1433773..1433963,1434446..1434641,1434772..1434836, 1435315..1435416,1435513..1435648,1435712..1435900) /locus_tag="TCM_042614" /codon_start=1 /product="ARM repeat superfamily protein, putative" /protein_id="EOY17921.1" /db_xref="Phytozome:POPTR_0008s06390.1" /db_xref="TAIR:AT2G39910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXP4" /translation="MSNSLPDLHSHLSQLAKPILDSLLKTPYTPEEATKISTKSTLES LLSTKSSVKDFSLACALLSSSRSSTHELLAWIPSHLSTAAEAAFSDLSKAYNDALPAD EKINLAGQLMPEIVPVLKEKIKESSINKSDEEDEVSAASARAPVGFAILAAYQFRWFV SQVEYPNLGKMVNLVVPCALTCLDHWSPEVKGQGMISFIHVAKNVNAPELGWYGDVIL DACCQNIASSDEIWLYVVEMSVLLVTCIQGDNPRSSWFEKMLNEMLSHLERQPRNKER CIAWLQFIEPIFNAIGLVLLAHFRRIFPLFFRWMHVDDDETVLLVLKRVQTVIRLTWI RNTPYIDRLVDELIVLFKEAELRTARDEIRTDILDILIMLQQCKGQQFETAWDKHKDD PDLTTLACNLSSEPTLKEESDTSCVAVLGFESKLMSFSCSSFLQFLNYRGFYLAPKIE EEVTGPKVKVKRKVERKPKMKIKPGRRLNRRGQ" gene complement(1436527..1439527) /locus_tag="TCM_042615" /note="dbxref CacaoGD:Thecc1EG042615" mRNA complement(join(1436527..1436917,1437268..1437496, 1437615..1437718,1438898..1439527)) /locus_tag="TCM_042615" /product="Nucleotide-sugar transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041693t1" /inference="similar to AA sequence:frave:gene20895" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3934t1" CDS complement(join(1436771..1436917,1437268..1437496, 1437615..1437718,1438898..1439338)) /locus_tag="TCM_042615" /note="dbxref frave:gene20895; paralog of Thecc1EG041693t1" /codon_start=1 /product="Nucleotide-sugar transporter family protein" /protein_id="EOY17922.1" /db_xref="TAIR:AT3G11320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6DBP3" /translation="MKNQSKFFTIGLVTAWYSSNIGVLLLNKYLLSNYGFKYPIFLTM CHMTACSLLSYIAIAWMKMVPMQTIRSRVQFFKISALSLVFCVSVVFGNISLRFLPVS FNQAIGATTPFFTAVFAYLMTFKREAWLTYLTLVPVVTGVIIASGGEPSFHLFGFIMC VAATAARALKSVLQGILLSSEGEKLNSMNLLLYMAPIAVVFLLPATLIMEENVVGITL ALARDDIKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIF RNPVSVTGMLGYSLTVFGVILYSEAKKRSK" gene complement(1444025..1445901) /locus_tag="TCM_042616" /note="dbxref CacaoGD:Thecc1EG042616" mRNA complement(join(1444025..1444249,1444765..1444807, 1444886..1445114,1445635..1445670,1445793..1445901)) /locus_tag="TCM_042616" /product="Ribosomal protein L35Ae family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016386001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021780t3" /inference="similar to AA sequence:Phytozome:GSVIVT01034025001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10546t00001; inference alignment:Newbler:10:TSA:cgbaL_g10546t00001" mRNA complement(join(1444117..1444249,1444765..1444797, 1444869..1445114,1445635..1445670,1445793..1445833)) /locus_tag="TCM_042616" /product="Ribosomal protein L35Ae family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016386001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021780t3" /inference="similar to AA sequence:Phytozome:GSVIVT01034025001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17143t8; inference alignment:Newbler:10:TSA:cgbaL_g10546t00001; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc6107t1" CDS complement(join(1444766..1444807,1444886..1445114, 1445635..1445670,1445793..1445824)) /locus_tag="TCM_042616" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021780t3" /codon_start=1 /product="Ribosomal protein L35Ae family protein isoform 1" /protein_id="EOY17923.1" /db_xref="Phytozome:GSVIVT01034025001" /db_xref="TAIR:AT1G74270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D6E9" /translation="MVKGRQGERVRLYVRGTILGYKRSKSNQYTNTSLIQIEGVNSKE EVAWYCGKRMAYIYKAKVKKNGSHYRCIWGKVARPHGNSGVIRAKFKSNLPPKSMGDK VRVFMYPSNI" CDS complement(join(1444794..1444797,1444869..1445114, 1445635..1445670,1445793..1445824)) /locus_tag="TCM_042616" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021780t3" /codon_start=1 /product="Ribosomal protein L35Ae family protein isoform 2" /protein_id="EOY17924.1" /db_xref="Phytozome:GSVIVT01034025001" /db_xref="TAIR:AT1G74270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D6E9" /translation="MVKGRQGERVRLYVRGTILGYKRSKSNQYTNTSLIQIEGVNSKE EVAWYCGKRMAYIYKAKVKKNGSHYRCIWGKVARPHGNSGVIRAKFKSNLPPKSMVSV ILF" gene 1446355..1451358 /locus_tag="TCM_042617" /note="dbxref CacaoGD:Thecc1EG042617" mRNA join(1446355..1449679,1449828..1450359,1451194..1451358) /locus_tag="TCM_042617" /product="Disease resistance protein RPP8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043397t1" /inference="similar to AA sequence:ricco:30143.m001203" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc58t13" CDS 1446870..1449653 /locus_tag="TCM_042617" /note="dbxref ricco:30143.m001203; paralog of Thecc1EG043397t1" /codon_start=1 /product="Disease resistance protein RPP8" /protein_id="EOY17925.1" /db_xref="TAIR:AT5G43470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR21" /translation="MAEAIVFLAIERIADLLIHEALFLNDVRQEVESLKAELERMKSF LKDVDRKQEQDERLRTRVREIRDLAYDAEDVIDSYILEVAHRGGFHEIIKRFTTLSTH KVGKQVRAIQNKLGDISRTLPAYGISGGGGGSNSTDEMQRRLRRSYPHVEEDDVVSLE LSTRDVIDQLMKKEDRLHVVSIVGMGGIGKTTLAKRLYNHNDVKRHFDCCAWVFISQQ CLPREVFHGVLMKVLSPSRKERKLIDKLKEDELVEKLYDVLKEKRYLVVLDDIWSYKD WDSLKPAFPKGQEGSKLLLTTRKKKVALLVDPCSSPVELPLLTDDESWKLFKRKAFSE NKMEAHACSKEFEMLGKEMLKKCGGLPLAIVVLGGLLATKKSWNEWEMVQKNINAYLN KDQRQEYGGVTEILALSYNELPFHLKPCFLYLGHYPEDLEISKKELVRLWIAEGFISP SLGGGEMLMEDVAEQYLEELTNRCLVQVGRRNHTGASVKTCYIHDLLRDLCVSKAREE NFFGIVQPSMNGNENCSLDLTVAAVSKMRRIVVHPSKRYVSLKGECPNLRSLLLFQDE ELIRLRISKCNNFKFLRILKLLREVGSWIMPSAIGYLFHLRYLSLKCRKLVLPCSIGK LKNLHTLSIQVEFLVKIPNVLSKLERLRHFLLNYYHGFKKYGSHEWHEIKGFCQVNTL ENIETMKYIRVENLTKNNALLKLTNIRSLGIQFMRSKDVETILRSPSFGLDRLRSLHM RLEEPIPFPTLEQLSQCHHLYKLFLHGRIQEDPRSSHHVLKFLPTNICKLTLWESHIN QDPMPVLEKLPHLRILCLGSSSYRGTKMSCSANGFPQLDSLHIYSLDLKEWQMEVGAM PCLRSLHLTCVPRMKMFPEGLRYITTLQEMKLKGMRKSLVKRIQVIEGREGEDFYKVR HILSIRIIDTWIR" gene 1450542..1455185 /locus_tag="TCM_042618" /note="dbxref CacaoGD:Thecc1EG042618" mRNA join(1450542..1450638,1451194..1454316,1454455..1454484, 1454665..1455185) /locus_tag="TCM_042618" /product="Disease resistance protein RPP8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032828001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042621t1" /inference="similar to AA sequence:ricco:30143.m001203" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7629t18" CDS join(1451652..1454316,1454455..1454484,1454665..1454741) /locus_tag="TCM_042618" /note="dbxref ricco:30143.m001203; paralog of Thecc1EG042621t1" /codon_start=1 /product="Disease resistance protein RPP8" /protein_id="EOY17926.1" /db_xref="TAIR:AT5G48620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SE03" /translation="MAQSIVSLTIERIADLLIHEALFLNDVKEEVESLKGELERMKSF LKDVDRKQEQDERLRTRVREIRDLAYDAEDVIDSYILKVANRGGFCTIIKRFTTLSST HKIGNEVNTILTKLENISKTLLVFGISREGEGSNSAAEMQHRLRRSYPHIEEDDVVSL EVSTRDVMDQLMKKEDRLHVVSIVGIGGIGKTTLAKKVYNHNDVKKHFDCCAWVFISQ QCKPREVLHGVLIKILSPSIKDRELIDKLKEDELVEKLYDVLKDKRYLVVFDDIWRYE DWDSLKPAFPKGNEGSKLLFTTRNKEVAMLADPRSSPIELSLLTGDESWKLFKRKAFP ENKMESHACSKEFETLGKEMLKKCGGLPLAIVVLGGLLATKKSWNEWEMVQKNINAHL NKVQQQEYGGVNGILALSYNELPFHLKPCFLYLGHYPEDSEISKKELIRLWIAEGFIS PSLEGGEMLMEDVAEQYLEELINRCLVQVSRRGHRGTSVKTCRIHDLLRDLCVSKAQE ENFFQIIQPPMNGNENRSLDLTVATVPKVRRIAVYLNERYVSLKGKCLSLRSLLLFQD EGLIRLHISKCINFRFLRVLKLLRKNDFWTLSSEIGNLCHLRYLGIQCQGVDLPRSIG KLKNLHTLFIQVSGGSVKIPSVLSKLQRLRHLVLTGHWRNWPVKWPEIKRCSQGNSLK NIETLKYIRIENLTENNALLKLTNIQSLGIQFGRSEDVEAILKSPSFGLRRLRSLRML LDGSIPFPELEQLTQCHHLSKLFLRGQIQEDPNSSHHVLEFLPTNICKLTLWQSLINE DPMPVLEKLPHLRILILKTSSYTGTKMSCSVNGFPQLDSLHIYGSNLAEWQIEEGAMP RLRSLYLVVVPGLKMVPEGLRYITTLQEMYLHESIILAQSSCGRHSIVQLSCDLGINL LQDSATVIV" mobile_element complement(1456540..1461987) /note="source:CACAO_M_E85278_F18_scaffold_10 1 5448" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1462382..1467986 /locus_tag="TCM_042621" /note="dbxref CacaoGD:Thecc1EG042621" mRNA join(1462382..1462962,1464192..1466366,1466550..1467550, 1467731..1467986) /locus_tag="TCM_042621" /product="Disease resistance protein RPP8 isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042618t1" /inference="similar to AA sequence:ricco:29585.m000582" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.46 coverage" mRNA join(1462382..1462439,1464192..1467550,1467731..1467986) /locus_tag="TCM_042621" /product="Disease resistance protein RPP8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032828001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042618t1" /inference="similar to AA sequence:ricco:29585.m000582" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8333t9" mobile_element 1463548..1463634 /note="source:CACAO_M_E73089_F74_scaffold_10 3440 3528" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1463578..1463659) /note="source:CACAO_M_E57469_F369_scaffold_9 1251 1323" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 1464511..1467492 /locus_tag="TCM_042621" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29585.m000582; paralog of Thecc1EG042618t1" /codon_start=1 /product="Disease resistance protein RPP8 isoform 1" /protein_id="EOY17927.1" /db_xref="TAIR:AT5G48620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR21" /translation="MVDLFFFFFSKRSGSIHTAIAYIRKLVETKVQGKELLLMLICLS YFLLQNSLTCPINLSTLWHFICLAFERRMAEAIVSVATERIADLLIHEALFLNDVGQE VESLKAELERMKSFLKDVDRKQEQDERLRNRVREIRDLAYDAEDVIDSYILKVAHRRG FHGFIKRFTTVFITHKMGKQVKDIQTKLGDISKTLPTYGISGEGEGSNSAAEMQHRLR RSYPHVEEDDVVSLEVSTRDVMDQLMKKEDRLHVVSIVGMGGIGKTTLAKKVYNHNDV KKYFDCCAWVFISQQCKPKEVLHGVLIKVLTPSIKDRELIDKLKEDELVEKLYDVLKE KRYLVVFDDIWKCEDWESLKPAFPKGNEGSKLLFTTRNKEVAMIADPRSSPIELPFLT GDESWTLFKRKALPENKMESHACSKEFAMLGKEMLKKCGGLPLAIVVLGGLLATKKSW TEWEMVQKNINAYLNKVQQQEYGGVNGILALSYNELPFHLKPCFLYLGHYPEDSEISK TELIRLWIAEGFISPSLEGREMLMEDVAEQYLVELINRCLVQVSRWDHTGTNVKTCRI HDLLRDLCVSKAGKENFFGIIQPPMNGNENHSLDLTVATVPKVRRIAVYPSKRYVFLK GKCLSLRSLLLFQDEGLIRLQISKCINFRFLRVLKLLRKDDFWTLSSEIGNLFHLRYL GLTCYEVVLPHSFGKLKNLHTLFIQVDEPAKIPNVLSKLQRLRHLVLTGNWKNLQNNW PEIQRCCQVNSLKNIETLKYVRIENLTENNALLKLTNIRSLGIQFGRSEDVEAILKSP SFGLHRLRSLRMELEGSIPFPELEQLSQCHHLSKLLLDGQIQEDTNSSHHVLEFLPTN ICKLTLWSSCINEDPMPVLEKLPHLRILIFQSSSYTGTKMSCSVNGFPQLDSLEIYGS NLAEWQIEEGAMPCLRSLYLATVPGLKMVPEGLRYITTLQELYLQDMNRSLGERIRVR DGREGEDFYKVRHVLSIQIIS" CDS join(1464511..1466366,1466550..1467492) /locus_tag="TCM_042621" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29585.m000582; paralog of Thecc1EG042618t1" /codon_start=1 /product="Disease resistance protein RPP8 isoform 2" /protein_id="EOY17928.1" /db_xref="TAIR:AT5G48620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR21" /translation="MVDLFFFFFSKRSGSIHTAIAYIRKLVETKVQGKELLLMLICLS YFLLQNSLTCPINLSTLWHFICLAFERRMAEAIVSVATERIADLLIHEALFLNDVGQE VESLKAELERMKSFLKDVDRKQEQDERLRNRVREIRDLAYDAEDVIDSYILKVAHRRG FHGFIKRFTTVFITHKMGKQVKDIQTKLGDISKTLPTYGISGEGEGSNSAAEMQHRLR RSYPHVEEDDVVSLEVSTRDVMDQLMKKEDRLHVVSIVGMGGIGKTTLAKKVYNHNDV KKYFDCCAWVFISQQCKPKEVLHGVLIKVLTPSIKDRELIDKLKEDELVEKLYDVLKE KRYLVVFDDIWKCEDWESLKPAFPKGNEGSKLLFTTRNKEVAMIADPRSSPIELPFLT GDESWTLFKRKALPENKMESHACSKEFAMLGKEMLKKCGGLPLAIVVLGGLLATKKSW TEWEMVQKNINAYLNKVQQQEYGGVNGILALSYNELPFHLKPCFLYLGHYPEDSEISK TELIRLWIAEGFISPSLEGREMLMEDVAEQYLVELINRCLVQVSRWDHTGTNVKTCRI HDLLRDLCVSKAGKENFFGIIQPPMNGNENHSLDLTVATVPKVRRIAVYPSKRYLGLT CYEVVLPHSFGKLKNLHTLFIQVDEPAKIPNVLSKLQRLRHLVLTGNWKNLQNNWPEI QRCCQVNSLKNIETLKYVRIENLTENNALLKLTNIRSLGIQFGRSEDVEAILKSPSFG LHRLRSLRMELEGSIPFPELEQLSQCHHLSKLLLDGQIQEDTNSSHHVLEFLPTNICK LTLWSSCINEDPMPVLEKLPHLRILIFQSSSYTGTKMSCSVNGFPQLDSLEIYGSNLA EWQIEEGAMPCLRSLYLATVPGLKMVPEGLRYITTLQELYLQDMNRSLGERIRVRDGR EGEDFYKVRHVLSIQIIS" gene 1469132..1472375 /locus_tag="TCM_042622" /note="dbxref CacaoGD:Thecc1EG042622" mRNA join(1469132..1469812,1470133..1470205,1470303..1470367, 1470445..1470533,1470634..1470766,1470849..1471081, 1471164..1471640,1471728..1472375) /locus_tag="TCM_042622" /product="O-fucosyltransferase family protein" /inference="alignment:exonerate- protein:2:TAIR:AT2G37980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021783t1" /inference="similar to AA sequence:ricco:29610.m000398" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg922t1" CDS join(1469399..1469812,1470133..1470205,1470303..1470367, 1470445..1470533,1470634..1470766,1470849..1471081, 1471164..1471640,1471728..1471941) /locus_tag="TCM_042622" /note="dbxref ricco:29610.m000398; paralog of Thecc1EG021783t1" /codon_start=1 /product="O-fucosyltransferase family protein" /protein_id="EOY17929.1" /db_xref="TAIR:AT2G37980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SWN7" /translation="MLTLSMSSLTHNSSKVSSRLLGFVTRRRVLESGEEQDGNTLPVK NPSFLRRKALFLPELLRPGRNFGRWMFWGLLLLGFMTLLAKFALVNTFQDLNIDGRRL IATKVVENSSSANKVVQERGGNGGDFKEISSPEKLSTPDIWIKPNSDFYHKCVDRSSN EIKPPSNGYILVHSNGGLNQMKTGISDMVAIAKIMNATLVLPSLDHHSFWTDSSDFKD IFDWKHFIQYLEEDIWVVDHLPPAFASIKPLPRPPVSFSKPSYYRVQMSSLLKKHKVI NFTHSDSRLANNGLSNPIQRLRCRAMYEALKFTEDIENLAMKLVERLKDGGSPYIALH LRYEKDMLAFTGCSHNLTKAEDDELRQLRYSVRHWKEKEINSEERRRQGVCPMTPREV AVFLEAMGYPSDTKIFIVAGKIYGRDGVKPLKEKYPNILTHSNLATEGELMPFKNHQN QLAALDYIVALESDVFVFTYDGNMARAVQGHRKYEGFRKTISPDKLNFVKLIDRMDRG EISWDEFASKVRLLHANRTGGPVPRRPGNCSKTEESFYANPYPGCICLKQRRKRKKC" gene 1472571..1474475 /locus_tag="TCM_042623" /note="dbxref CacaoGD:Thecc1EG042623" mRNA join(1472571..1472699,1473313..1473560,1474451..1474475) /locus_tag="TCM_042623" /product="Yos1-like protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016389001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021785t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016389001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc177t2" CDS 1473316..1473549 /locus_tag="TCM_042623" /note="paralog of Thecc1EG021785t1" /codon_start=1 /product="Yos1-like protein" /protein_id="EOY17930.1" /db_xref="Phytozome:GSVIVT01016389001" /db_xref="TAIR:AT2G37975.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DS61" /translation="MGLWTILEGFLLLANALAILNEDRFLAPRGWSFTEFSAGRTKSF KGQLIGLIYATQYMRVPLILLNAICIVVKLVSG" gene complement(1474855..1478670) /locus_tag="TCM_042624" /note="dbxref CacaoGD:Thecc1EG042624" mRNA complement(join(1474855..1475538,1475637..1475852, 1476367..1476491,1477046..1477235,1477495..1477589, 1477695..1477919,1478329..1478670)) /locus_tag="TCM_042624" /product="Proline transporter 1" /inference="alignment:exonerate-protein:2:frave:gene20892" /inference="similar to AA sequence:frave:gene20892" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06961t00001" CDS complement(join(1475161..1475538,1475637..1475852, 1476367..1476491,1477046..1477235,1477495..1477589, 1477695..1477919,1478329..1478410)) /locus_tag="TCM_042624" /note="dbxref frave:gene20892" /codon_start=1 /product="Proline transporter 1" /protein_id="EOY17931.1" /db_xref="TAIR:AT2G39890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P92961" /translation="MIAENINEVENDKVAVEVPETAHQISTDSWFQAGFVLTTGINSV FVLGYSGTIMVPLGWVGGVVGLILATALSLYANMLVAKLHEFGGRRHIRYRDLAAYIY GRKAYSITWALQYVNLFMINIGYLILGGSALKACYILFRDDHTMKLPYFISIAGSVCI LFAIATPHLSSLRIWLGCSTVLSLIYIIVACVLAAKDGIKAPPRDYGIPGTPTSRIFT TIGASANLVFAFNTGMLPEIQATVREPAVKNMLKALYFQFTMGVLPMYAVTFIGYWAY GSSTSTYLLNSVSGPVWVKAAANISAFLQSVIALHIFASPTYEYLDTKFGIRGSALKF ENLCFRIAARGSYLAISTLVSALLPFLGDFESLTGALSTFPLTFILANHMYLVAKKNK LISSQKLWHWLNVAFFSLMSIAAAVAALRLIAVDSKEYHVFADL" gene 1481700..1484856 /locus_tag="TCM_042625" /note="dbxref CacaoGD:Thecc1EG042625" mRNA join(1481700..1481851,1482297..1482472,1482563..1482633, 1482745..1483083,1483224..1483331,1483442..1484044, 1484200..1484856) /locus_tag="TCM_042625" /product="Inositol transporter 4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01190.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030370t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s01190.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg953t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg953t2" mRNA join(1481700..1481851,1482297..1482472,1482563..1482633, 1482748..1483083,1483224..1483331,1483442..1484044, 1484200..1484856) /locus_tag="TCM_042625" /product="Inositol transporter 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01190.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030370t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s01190.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg953t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg953t2" mRNA join(1482028..1482131,1482297..1482472,1482563..1482634, 1482748..1483083,1483224..1483331,1483442..1484044, 1484200..1484856) /locus_tag="TCM_042625" /product="Nositol transporter 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01190.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030370t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400023639" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg953t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg953t2" CDS join(1482337..1482472,1482563..1482633,1482745..1483083, 1483224..1483331,1483442..1484044,1484200..1484673) /locus_tag="TCM_042625" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG030370t1" /codon_start=1 /product="Inositol transporter 4 isoform 3" /protein_id="EOY17934.1" /db_xref="Phytozome:POPTR_0016s01190.1" /db_xref="TAIR:AT4G16480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23492" /translation="MVEGGVKKADKTEFTECWKTTWKTPYIMRLALSAGIGGLLFGYD TGVISGALLYIREDFQQVDRKTWLQQETIVSMAVAGAIAGAAFGGWVNDRFGRKKSIL GADVLFAVGAIIMAVAQAPWIIILGRFFVGLGVGMASMTAPLYISEASPARIRGALVS TNGLLITGGQFLSYLINLAFTKTSWTWRWMLGIAAVPALVQFILMLSLPESPRWLYRQ DKVEEARSILERIFPANEVDDEMNALKLSVEAEQADEHAIGDGLIQKVKGALSDVVVR RGLYAGITVQVAQQFSGINTVMYYSPTIVQFAGFASKKTALALSLITSGLNAVGSIVS MTFVDRYGRRRLMLISMAAIILCLVTLSFVFLEAANHAPKINQLDTNFPTNATCPSYL SAPKPSSWNCMSCLKAGCGFCANGANEYSPGTCLEFSTDLRDSCRGQHRTWFKDGCPS KFGFLAVVLLGLYIISYSPGMGTVPWIVNSEIYPLRYRGIGGGLAAVSNWISNLIVSE TFLSLTKALGSAGTFGLFAGICFITLIFIYCLVPETKGLQIEEVEQMLKTGYKPKLLR GKSKGDIQSA" CDS join(1482337..1482472,1482563..1482633,1482748..1483083, 1483224..1483331,1483442..1484044,1484200..1484673) /locus_tag="TCM_042625" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030370t1" /codon_start=1 /product="Inositol transporter 4 isoform 1" /protein_id="EOY17932.1" /db_xref="Phytozome:POPTR_0016s01190.1" /db_xref="TAIR:AT4G16480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23492" /translation="MVEGGVKKADKTEFTECWKTTWKTPYIMRLALSAGIGGLLFGYD TGVISGALLYIREDFQQVDRKTWLQETIVSMAVAGAIAGAAFGGWVNDRFGRKKSILG ADVLFAVGAIIMAVAQAPWIIILGRFFVGLGVGMASMTAPLYISEASPARIRGALVST NGLLITGGQFLSYLINLAFTKTSWTWRWMLGIAAVPALVQFILMLSLPESPRWLYRQD KVEEARSILERIFPANEVDDEMNALKLSVEAEQADEHAIGDGLIQKVKGALSDVVVRR GLYAGITVQVAQQFSGINTVMYYSPTIVQFAGFASKKTALALSLITSGLNAVGSIVSM TFVDRYGRRRLMLISMAAIILCLVTLSFVFLEAANHAPKINQLDTNFPTNATCPSYLS APKPSSWNCMSCLKAGCGFCANGANEYSPGTCLEFSTDLRDSCRGQHRTWFKDGCPSK FGFLAVVLLGLYIISYSPGMGTVPWIVNSEIYPLRYRGIGGGLAAVSNWISNLIVSET FLSLTKALGSAGTFGLFAGICFITLIFIYCLVPETKGLQIEEVEQMLKTGYKPKLLRG KSKGDIQSA" CDS join(1482763..1483083,1483224..1483331,1483442..1484044, 1484200..1484673) /locus_tag="TCM_042625" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030370t1" /codon_start=1 /product="Nositol transporter 3 isoform 2" /protein_id="EOY17933.1" /db_xref="Phytozome:PGSC0003DMP400023639" /db_xref="TAIR:AT2G35740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23492" /translation="MAVAGAIAGAAFGGWVNDRFGRKKSILGADVLFAVGAIIMAVAQ APWIIILGRFFVGLGVGMASMTAPLYISEASPARIRGALVSTNGLLITGGQFLSYLIN LAFTKTSWTWRWMLGIAAVPALVQFILMLSLPESPRWLYRQDKVEEARSILERIFPAN EVDDEMNALKLSVEAEQADEHAIGDGLIQKVKGALSDVVVRRGLYAGITVQVAQQFSG INTVMYYSPTIVQFAGFASKKTALALSLITSGLNAVGSIVSMTFVDRYGRRRLMLISM AAIILCLVTLSFVFLEAANHAPKINQLDTNFPTNATCPSYLSAPKPSSWNCMSCLKAG CGFCANGANEYSPGTCLEFSTDLRDSCRGQHRTWFKDGCPSKFGFLAVVLLGLYIISY SPGMGTVPWIVNSEIYPLRYRGIGGGLAAVSNWISNLIVSETFLSLTKALGSAGTFGL FAGICFITLIFIYCLVPETKGLQIEEVEQMLKTGYKPKLLRGKSKGDIQSA" gene complement(1483942..1487552) /locus_tag="TCM_042627" /note="dbxref CacaoGD:Thecc1EG042627" mRNA complement(join(1483942..1484022,1486022..1487552)) /locus_tag="TCM_042627" /product="Concanavalin A-like lectin family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene20891" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021787t1" /inference="similar to AA sequence:frave:gene20891" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g15128t00001; inference alignment:Newbler:10:TSA:cgbaP1_g06722t00001" CDS complement(1486276..1487343) /locus_tag="TCM_042627" /note="dbxref frave:gene20891; paralog of Thecc1EG021787t1" /codon_start=1 /product="Concanavalin A-like lectin family protein, putative" /protein_id="EOY17935.1" /db_xref="TAIR:AT5G01090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG28" /translation="MATFSINSYTFSFNLQIFIFLFLAAKPISSFAQQALDNNPSFSP HISLFGDARVEDGGSHVRLTRPHAPSSGLLLLEKPFKFADERNVGRPTSFAAEFSFSL SPGNGDGLAFVLIPNGFQTRFQDQGYFGLFGENRFLGIEFDTKKDDKVGDLNANHVGI DVGSLESVKVSNLSSLNLVLNNGEILKSWVDYDSSSKLLQVRLSKLNDKRPFTPILAY RIDLFEMWGNEDVFVGIISTTNEESSQSSSNVYSWRFRVRDVSSWMHSLPADPRGYVD KDSQEFRAERSKFCALTILAGLIFATGCGALLAFVMLFMWAIMVNRHTVFPVECQAGP DDFRYEKVNVIVEKDDQGDKD" gene complement(1492573..1495707) /locus_tag="TCM_042628" /note="dbxref CacaoGD:Thecc1EG042628" mRNA complement(join(1492573..1492994,1493482..1493890, 1495574..1495707)) /locus_tag="TCM_042628" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8527t1_C2" CDS complement(join(1492976..1492994,1493482..1493890, 1495574..1495676)) /locus_tag="TCM_042628" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17936.1" /translation="MAVFIQGPLLCQMGNKGWVGMKFMSFKEGTYVLRAFLFYIGGSL PPQTTFLYKRKEERQKAFDGRRGGGGEEGAAACLPAGFLHCQVLEEASKGIALILYFQ PFLLSHNFGSCYPFGFLLWLAFKDIRTWWCTLSLSPCIEQQENPMMTRPYETHQRRRR TMQKKTCPKISNMKVR" mobile_element 1498190..1498268 /note="source:scaffold_1_CACTA_0011 7430 7510" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1498217..1498269 /note="source:CACAO_M_E69306_F123_scaffold_9 4933 4985" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1498218..1498286 /note="source:CACAO_M_E43428_F369_scaffold_5 1270 1338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1498270..1498296) /note="source:CACAO_M_E58230_F143_scaffold_9 1679 1726" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1501715..1505417 /locus_tag="TCM_042629" /note="dbxref CacaoGD:Thecc1EG042629" mRNA join(1501715..1502232,1503891..1505417) /locus_tag="TCM_042629" /product="Myb domain protein 25, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021796t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20220.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08646t00001" CDS join(1501917..1502232,1503891..1504822) /locus_tag="TCM_042629" /note="paralog of Thecc1EG021796t1" /codon_start=1 /product="Myb domain protein 25, putative" /protein_id="EOY17937.1" /db_xref="Phytozome:POPTR_0010s20220.1" /db_xref="TAIR:AT3G55730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TMI6" /translation="MKGEEKESNCQDSPAVGGSCSGGGGDELELIVAESELAGGGSGG NSRVKGPWSPEEDAVLSRLVAKFGARNWSLIARGIPGRSGKSCRLRWCNQLDPCLKRK PFTDEEDRIIISAHAIHGNKWASIAKLLPGRTDNAIKNHWNSTLRRRCMELGRFKPEP ADMMEDGSLERTKASSEETLSVGDINSFKHFEGRDVVMDDRPNLQVDKPPIKEDQSAA EPKDHPTLCRPVARVSAFSVYNPPSNSRTESGMSSTILMQGPLAHASRSDWGVGKILE DLCSEPVIPLCCGFGCCSTPCGGHSQSSLLGPEFVDYEEPPAFSSHELISIATDLNNI AWIKSGLENSCVRIPSNTAGQRLPQGATSSMQIGISDLYVKSDHMRFDDGRSKLTGMT AEVIPTQMPKQTFTVRSEVEGLS" gene 1506565..1509259 /locus_tag="TCM_042630" /note="dbxref CacaoGD:Thecc1EG042630" mRNA join(1506565..1507327,1508721..1509259) /locus_tag="TCM_042630" /product="RING/FYVE/PHD zinc finger superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021799t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20230.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04326t00001_C1" CDS join(1506942..1507327,1508721..1508955) /locus_tag="TCM_042630" /note="paralog of Thecc1EG021799t1" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein" /protein_id="EOY17938.1" /db_xref="Phytozome:POPTR_0010s20230.1" /db_xref="TAIR:AT5G05830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT29" /translation="MEALPKQPQEVVIDVDGEEQANQTDNEEQEDRCSSSSSDESART NEIIKGRESSVFETSSLEVDLESGATETKVHLAKVERDCRICHLSLDPTSEESGVPIE LGCSCKDDLAAAHRQCAEAWFKIKGNRTCEICGSTARNVAAANETDITDQWNEANDAP AATAPVTIHAAETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS" gene complement(1509476..1512037) /locus_tag="TCM_042631" /note="dbxref CacaoGD:Thecc1EG042631" mRNA complement(join(1509476..1510274,1510732..1511097, 1511203..1512037)) /locus_tag="TCM_042631" /product="Emb:CAB81597.1" /inference="alignment:exonerate- protein:2:ricco:29610.m000392" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000420t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06280.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg945t1" CDS complement(join(1509654..1510274,1510732..1511097, 1511203..1511505)) /locus_tag="TCM_042631" /note="paralog of Thecc1EG000420t1" /codon_start=1 /product="Emb:CAB81597.1" /protein_id="EOY17939.1" /db_xref="Phytozome:POPTR_0008s06280.1" /db_xref="TAIR:AT5G05840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFJ4" /translation="MRKLCPNYDLPDGLDTVLEVPIPEEMFASNKSSHRSWQNMKSWM NMKPNSERPPASMTVLFGGRNTEIQLLLGVIGAPLIPLPIKIDHDHSISKNIKDHPIE ASMAKYIVKQYIAAIGGEQALNSIDSMYAMGKVKMAASEFCAGEGSVNNRIVKVRNLR NGGGEMGGFVLWQKRPDLWCLELVVSGCKISAGSDGKVAWRQTPWHHSHASRGPPRPL RRFLQGLDPRSTANLFSNSVCVGEKTINDEDCFILKLEAEPSTLRARSSSNVEIIRHT VRGYFSQRTGLLVQLEDSHLLRIKAPGNDSIFWETTMESWIQDYKTIDGINIAHAGKT WVSLFRFGENSESHSRTRMEEAWTIEEVDFNIKGLSMDCFLPPGDLNKEEEGYGIVSS NVRLPFKLRNGSTRVSASKIVAIDVDECDNSSDDEDL" gene complement(1514568..1518767) /locus_tag="TCM_042632" /note="dbxref CacaoGD:Thecc1EG042632" mRNA complement(join(1514568..1515737,1518367..1518767)) /locus_tag="TCM_042632" /product="HSP20 chaperones superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29610.m000391" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041718t1" /inference="similar to AA sequence:Phytozome:Glyma02g42000.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16440t00001" CDS complement(1514977..1515459) /locus_tag="TCM_042632" /note="paralog of Thecc1EG041718t1" /codon_start=1 /product="HSP20 chaperones superfamily protein" /protein_id="EOY17940.1" /db_xref="Phytozome:Glyma02g42000.1" /db_xref="TAIR:AT1G53540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P19037" /translation="MAMIPSFFGSRRSNIFDPFSLDIWDPFEGCPFTTNAVANVPSSS HEKSAIANTRIDWKETPEAHIFKADLPGLKKAEVKMEVEEGKVLQISGERSREQEDKN DTWHRIERSSGKFLRKFRLTEIAKMDQIKARMENGVLSVIVPKEEEKKPEVKPIEISG " mobile_element 1516502..1516663 /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1516892..1517234 /note="source:CACAO_M_E84908_F12_scaffold_10 3225 3587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1517080..1517388 /note="source:scaffold_10_CACTA_0134 4343 4675" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1517687..1518073 /note="source:scaffold_10_CACTA_0134 3826 4211" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1517699..1518224 /note="source:CACAO_M_E84908_F12_scaffold_10 3040 3587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1518070..1518418 /note="source:scaffold_10_CACTA_0134 4343 4715" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1518437..1519213 /note="source:CACAO_M_E84908_F12_scaffold_10 2804 3587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1519065..1519469 /note="source:scaffold_10_CACTA_0134 4289 4715" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1519228..1520390) /note="source:CACAO_M_E43348_F5_scaffold_5 3690 4794" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1520446..1520577 /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1520692..1520853 /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1520939..1521109 /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1521493..1522142 /note="source:CACAO_on_E71_scaffold_9 1 599" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(1522154..1522478) /note="source:CACAO_on_E19_scaffold_3 83 417" /mobile_element_type="transposon:TIR/hAT" mobile_element 1522284..1522518 /note="source:scaffold_5_CACTA_0607 9870 10127" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1522521..1522800 /note="source:INTACT166_F161_scaffold_4-int 128 404" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1523001..1525009) /note="source:CACAO_Again_on_E230_scaffold_10 1 2009" /mobile_element_type="transposon:TIR/hAT" gene 1524985..1527128 /locus_tag="TCM_042633" /note="dbxref CacaoGD:Thecc1EG042633" mRNA join(1524985..1525813,1525932..1527128) /locus_tag="TCM_042633" /product="UDP-glucosyltransferase family 1 protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042635t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06270.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1248t3" CDS join(1525312..1525813,1525932..1526869) /locus_tag="TCM_042633" /note="paralog of Thecc1EG042635t1" /codon_start=1 /product="UDP-glucosyltransferase family 1 protein" /protein_id="EOY17941.1" /db_xref="Phytozome:POPTR_0008s06270.1" /db_xref="TAIR:AT1G22360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6KI45" /translation="MDQEQQPQAYPHVLLFPLPAQGHVNSMLKLAELFALAGLEVTFL NSDHNHERLVRHTDVGFRFAKYPRFKFETIPDGLREDHPRLGVSFMELFESMELRTKP ILREMLVKINPPVDCIIGDGALGLVLDVADELGIPIFQFRTISASGIWAYFAIPDMIE AGELPIRGNEDMDRLITRVPGMETFLRCRDLPSFCRDSDMTDSNLQLIAKETRKNLSA PGLILNTFEDLEGAILSHMRSKCPKIYTVGPLHLHLNTRLAETNGTMVHQSPNSLWEV DRSCLSWLDEQPKESVVYVSFGSIAVLSREQIMEFWFGLVNSRKRFLWVFRPDFMPEK GSIPAELVEGTKQRGYMVGWAPQEEVLAHCAIGGFLTHSGWNSTLESLVAGVPMICWP YFADQQLNSRFVSEVWKLGLDMKDVCDRRVVEKMVNDLIVDKREEFVKSSAEIAKLAK ACVNVGGSSYCNLDRLIEDIRSMNRNCSK" gene 1527150..1529053 /locus_tag="TCM_042634" /note="dbxref CacaoGD:Thecc1EG042634" mRNA join(1527150..1527703,1527804..1529053) /locus_tag="TCM_042634" /product="UDP-glucosyltransferase family 1 protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06270.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042635t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06270.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1266t1" CDS join(1527202..1527703,1527804..1528750) /locus_tag="TCM_042634" /note="paralog of Thecc1EG042635t1" /codon_start=1 /product="UDP-glucosyltransferase family 1 protein" /protein_id="EOY17942.1" /db_xref="Phytozome:POPTR_0008s06270.1" /db_xref="TAIR:AT1G22380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6KI45" /translation="MEPGKSQAPSPHILIFPLPIQGPVNAMLKLAELCATAGLKVTFL NSEYNHSRLVRFANIPSRFDKYPGFEFRTISDGLPGDHSRSGNRFMEIFEAMNIRTKP LLKDMLVEMIPPVDCIIGDGILEFVLDVANELGIPIINCRTIGACFLWSNYSIPDMIE AGELPIKGSEDMDRPITAVPGMEKFLRCRDLPSFCRASNMSDSTLLRYGTVTRKSFTA SGVILNTFEELEGPILSQIRSKCPNVYTIGPLNEHFKTRMSLENGVSSQSSNYFWEVD RSCMSWLDRQPNQSVVYVSFGSIAVMSDEQIMEFWHGLVNSKRRFLWVVRPDSVAGKG FQGEDTPKELVEGTKDRGYIVGWAAQEEVLSHRAVGGFLTHSGWNSTMESIVAGVPML CWPYFADQQLNSRFVGEVWKLGIDMKDVCDRKVVEKMVNDLMVERKDEFVKSAAAMAS LAKDCVSVGGPSYCNFDRLIEDIKTISLKNHD" gene 1528953..1530998 /locus_tag="TCM_042635" /note="dbxref CacaoGD:Thecc1EG042635" mRNA join(1528953..1529629,1529916..1530998) /locus_tag="TCM_042635" /product="UDP-glucosyltransferase family 1 protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06270.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042638t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06270.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc472t3" CDS join(1529128..1529629,1529916..1530859) /locus_tag="TCM_042635" /note="paralog of Thecc1EG042638t1" /codon_start=1 /product="UDP-glucosyltransferase family 1 protein" /protein_id="EOY17943.1" /db_xref="Phytozome:POPTR_0008s06270.1" /db_xref="TAIR:AT1G22380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6KI45" /translation="MEKGEQSEACPHVLIFPLPLQGHVNSMFKLAELLALTGFKVTFL YSEHNHGRLVKYTNVSAHFASYPGFEFRTVPDGLPDDHPRSGDWFLEMYYAMETKAKL SLREMLLNINPPVDCIIGDGFLGFVLDVAKELGIPVFYFRTSSACCFWAYYSIPDIIQ AGEIPIRGIEDMNRLITTVPGMETFLRCRDLPSFCRASDMANSTIQLVVEQTRKSPQA HALILNTFEDLDRPILSHIRTKCPHVYTIGPIHALLNTRLKAKRGASSQFSNSLWEVD RNCISWLDKQPKQSVVYVSFGSITIPSREQLTELWYGLVNSKRRFLWVVRPNSVTGKD GQGEDVPVELLEGTKERGCIVGWAPQEEVLNHPAVGGFLTHSGWNSTLESVVAGVPMI CWPYFADQQVNSRFVSEVWKLGLDMKDVCDRKVVEKMVNDLMMDRREEFVKSAAEMAK LAKESVNVGGSSYCNLDRLIEDIRLMSLKKP" mobile_element 1537703..1538841 /note="source:INTACT135F_F90_scaffold_2-int 12867 14001" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1539750..1546800) /locus_tag="TCM_042636" /note="dbxref CacaoGD:Thecc1EG042636" mRNA complement(join(1539750..1541199,1541661..1542196, 1543327..1543455,1546567..1546800)) /locus_tag="TCM_042636" /product="UDP-Glycosyltransferase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042640t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20250.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1290t1" CDS complement(join(1540319..1541199,1541661..1542196, 1543327..1543451)) /locus_tag="TCM_042636" /note="paralog of Thecc1EG042640t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein, putative" /protein_id="EOY17944.1" /db_xref="Phytozome:POPTR_0010s20250.1" /db_xref="TAIR:AT3G11340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNQ4" /translation="MKQLGIWMHWLWSPGTEGYGCTGFGCLEEIDGSVISVLLVNCFL LDPVSNKLMENHEVIQMENMKGRGVMLFPLPFQGHLNPMFQLANTLHAKGFSITIIHT QFNSPNPSNYPHFRFCSIADGLSENQVVSSEIDDLIALVKILNSNCVTPFRDCLAKLL SSNVEDPIVCLVTDALWHFTQPVADGLKLPRIVLRTSNVFSFLVHKSLPSLHEKGYLS VQDSQAENHVPEFSPLKFKDIHRVETSHLESLLQFSSIIIQEVKASSGLIFNSNEDLE QEALTKCSLDFPIPTFAIGPFHKYFPASSCSSLLPQDQSCISWLDKQAPNSVIYVSFG SLAAMNEADFLEVAWGLANSKHPFLWVVRPGLVHGSEWLELLPNGFLEMLGGRGNIVK WAPQQEVLAHPSTGGFWTHCGWNSSLESLCEGVPMICQPSFGDQKVNARYISHVWKVG VHLEFKIERGEIEKAIKRLMVDAEGQEMRDRVKLLKEKMNLCLNPGGSSYKSLDNLVT YMLSL" mobile_element 1545878..1546524 /note="source:CACAO_on_E6_scaffold_1 1 687" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(1546530..1546870) /note="source:CACAO_on_E65_scaffold_9 77 408" /mobile_element_type="transposon:TIR/hAT" mobile_element 1546913..1547172 /note="source:INTACT166_F161_scaffold_4-int 132 386" /mobile_element_type="retrotransposon:LTR/Copia" gene 1547609..1549307 /locus_tag="TCM_046950" /note="dbxref CacaoGD:Thecc1EG046950" mRNA join(1547609..1547790,1547866..1548172,1548604..1548670, 1548769..1549307) /locus_tag="TCM_046950" /product="UDP-glucosyltransferase family 1 protein, putative" /inference="alignment:exonerate- protein:2:ricco:29610.m000389.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042633t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06270.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage" CDS join(1547671..1547790,1547866..1548172,1548604..1548670, 1548769..1549228) /locus_tag="TCM_046950" /note="paralog of Thecc1EG042633t1" /codon_start=1 /product="UDP-glucosyltransferase family 1 protein, putative" /protein_id="EOY17945.1" /db_xref="Phytozome:POPTR_0008s06270.1" /translation="MDQEQQPQAYPHVLIFPLPAQGHVNSMLKLAEVFALAGLQYPRF KFETIPDGLREDHPRLGDCFMELFEGMELRTKPILREMLVKINPPVDCIVGDGVLGLV LDVADELGIPIFQFRTISASCIWAYFAIPDMIEAGELPIRVFGKWTGVACHGLMSNQR NLLFRPDFMPEKGSIPVELVEGTKERGYMVGWAPQEEVLAHCAIGGFLTHSGWNSTLE SLVAGVPMICWPYFADQQLNSRFVSEVWKLGLDMKDVCDRRVVEKMVNDLIVDKREEF VKSSAEIAKLAKACVNVGGSSYCNLDRLIEDIRSMNRNCSK" gene 1549578..1551191 /locus_tag="TCM_046951" /note="dbxref CacaoGD:Thecc1EG046951" mRNA join(1549578..1550061,1550162..1551191) /locus_tag="TCM_046951" /product="UDP-glucosyltransferase family 1 protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042634t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06270.1" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1266t4" CDS join(1549827..1550061,1550162..1550562) /locus_tag="TCM_046951" /note="paralog of Thecc1EG042634t1" /codon_start=1 /product="UDP-glucosyltransferase family 1 protein, putative" /protein_id="EOY17946.1" /db_xref="Phytozome:POPTR_0008s06270.1" /db_xref="TAIR:AT1G22370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C6KI45" /translation="MEIFEAMNMRTKPLLKDMLVEMIPPVDCIIGDGILEFVLDVANE LGIPIINCRTIGACFLWSNYSIPDMIEAGELPIKGSEDMDRPITAVPGMEKFLRCRDL PSFCQASNMSDSTLLRYGTVTRKSLTASGVILNTFEELEGPMLSQIRSKCPNVYTIGP LNEHFKTRMSLENGVSSQSSNYFWEVNRSCMSWLDRQPNQSVVYVSLVALL" gene 1551414..1553254 /locus_tag="TCM_042638" /note="dbxref CacaoGD:Thecc1EG042638" mRNA join(1551414..1551941,1552202..1552613,1552702..1553254) /locus_tag="TCM_042638" /product="UDP-glucosyltransferase family 1 protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040141" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042635t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06270.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS join(1551440..1551941,1552202..1552613,1552702..1553170) /locus_tag="TCM_042638" /note="paralog of Thecc1EG042635t1" /codon_start=1 /product="UDP-glucosyltransferase family 1 protein, putative" /protein_id="EOY17947.1" /db_xref="Phytozome:POPTR_0008s06270.1" /db_xref="TAIR:AT1G22380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6KI45" /translation="MEKGEQSKACPHVLIFPLPLQGHVNSMFKLAELLALTGFKVTFL NSEHNHGRLVKHTNISAHFARYPGFEFRTVPDGLPDDHPRSGNWFLEMYYAMETKAKL SLREMLLNINPPVDCIIGDGFLGFVLDVAKELGIPVFYCRTSSACCFWAYYSIPDIIQ AGEIPIKGVFVKKLKGIEDMDRLITTVPGMETFLRCRDLPSFCRASDMANSTIQLVVK QTRKSPQAHALILNTFEDLDRPILSHIRTKCPHVYTIGPIHALLNTRLKAQCVASSQF SNSLWEEDRNCISWLDKQPKQSVVYVKFRPNSVTGKDGQGEDVPVELLEGTQERGCIV GWAPQEEVLNHSAVGGFLTHSGWNSTLESVVAGVPMICWPYFADQQVNSRFVSEVWKL GLDMKDVCDRKAVEKMVNDLMMDKREEFVKSAAEMAKLAKESVNVGGSSYCNLDRLIE DIRLMSLKKP" gene 1554354..1556648 /locus_tag="TCM_042639" /note="dbxref CacaoGD:Thecc1EG042639" mRNA 1554354..1556648 /locus_tag="TCM_042639" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042551t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400016871" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.64 coverage" CDS 1554428..1556281 /locus_tag="TCM_042639" /note="paralog of Thecc1EG042551t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17948.1" /db_xref="Phytozome:PGSC0003DMP400016871" /translation="MFVFWNQCLRFLRTKFGNFPSASKRKNFSSSLLSIGHIIPVVQV FLALLWVLFHLTDDQTATSSVNVLSVPKACNSCSPGVSPFGRKEIGRKEIGTLFVIIM LGHWLAIFLHFRGINFGFIPSTFKRKNSLYLPLSITLVPIFLSPLLVLFGLTSDQTAT FSGCFLSPFKDCESPFVSLFCTRATKILTFVLWILALQINDTDHRLFQLLLTFCLSRD NFSQLPDDVISKISNRFTSFEDLVALSGVCRSLRFACSDIRCAPRHRFPRLMLCDKEN RSTKSFYSVGRNKIYELELPQAHGKRCHGSPYGWIVTMGPDLQAHLLHPLSQAQLSLP KLNTIRSPIGVLVPVDPFRFIRKCILLKTSPSHSQDEFLVMVIFGPKHSLAFAKPGSV GWTTVVGADGFKDILLFKGQIHAICGKGTLLRFRSDDPEVTPRLIAYHPEDVSRVERI YLLESLGELLGVFRFSSSTPFVQRYDTKRFLVYVLNPDDDGNLGTWQRLNHLRDWALF VGEGNSWSVCSANIPNCRSNCIYFTDDNWDQQVGGEEQTLVGHDIGVFDMVSKKIERL ELGPHSPCYQSRSVWFTPSLLPYKNYQARGVLPRMNRETWKLWPAKQNMRH" gene complement(1556957..1559450) /locus_tag="TCM_042640" /note="dbxref CacaoGD:Thecc1EG042640" mRNA complement(join(1556957..1558422,1558885..1559450)) /locus_tag="TCM_042640" /product="UDP-Glycosyltransferase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20250.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042636t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20250.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08453t00001" CDS complement(join(1557542..1558422,1558885..1559182)) /locus_tag="TCM_042640" /note="paralog of Thecc1EG042636t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein, putative" /protein_id="EOY17949.1" /db_xref="Phytozome:POPTR_0010s20250.1" /db_xref="TAIR:AT3G11340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNQ4" /translation="MDYRKNQVVSSDVYDLIALIKILNSNCVTSFRDCLSKLLSSNVE DPIVCLVTDALWYFTQSVANGLKLPRIVLRTSNIFSFLVHKSMPSLHERGYLSVQDSR AENRVPEFSPLKFKDIHWVEASHLESVLQFLSILIPEVKASSGLIFNSNEDLEQEALT KCSLDFPIPTFSIGPFHKYFPASSCSSLLPQDQSCITWLDKQAPNSVIYVSFGSIAAM NEADFLEVAWGLANSKHHFLWVVRPGLVHGSEWLELLPNGFLEMLGGRGNIVKWAPQQ EVLAHPSTGGFWTHCGWNSSLESLCEGVPMICQPSFGDQKVDARYISHVWKVGVHLEF KIERGEIEKAIKKLMVDAEGQEMRDRVKLLKEMMNLCLKRGGSSYKSLDNLVTYMLSL " gene complement(1559866..1564498) /locus_tag="TCM_042641" /note="dbxref CacaoGD:Thecc1EG042641" mRNA complement(join(1559866..1561036,1561210..1562115, 1563936..1564023,1564131..1564498)) /locus_tag="TCM_042641" /product="UDP-Glycosyltransferase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29610.m000390" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042636t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20290.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1306t1" CDS complement(join(1560135..1561036,1561210..1561705)) /locus_tag="TCM_042641" /note="paralog of Thecc1EG042636t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein, putative" /protein_id="EOY17950.1" /db_xref="Phytozome:POPTR_0010s20290.1" /db_xref="TAIR:AT3G55700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT32" /translation="MERQSSKEMEQRKGRRLVLFPLPLQGHINPMLHLANILHSRGYS ITIIHTNFNSPDPSNYPHFTFHFFSENLPEDGTCATDLIAFLSLLNTRCGPPFRHCLA NLLSETSEEPVACLISDAILYFTQEVANELKLPRLVLRTGAASSFCVFTAFPLLKERG YIPIQDSRLEEPVVELPPLRVKDLPVIDTPDPVDLYRVVAGMVNQGKASSGLIWNTFE ELEQSALETLDRQLGVPLFPIGPFHKCFPVSKSSLSPQDESCISWLDKQERKSVIYVS FGSLAAVNETEFLEIAWGLANSKQPFLWVVRPGLIRGSEWLEPLPNGFLETLGGRGHV VKWAPQQQVLAHSAVGAFWTHNGWNSTLESMCEGIPMICMPCFTDQRVNARYVSEIWR VGVQLEKGMERGEIERTIKRLMVEKDGEEIRERVLHLKEKAALCLSQGGSSRHSLDRL VHHISSLESFTFQSQ" gene complement(1564069..1567072) /locus_tag="TCM_042642" /note="dbxref CacaoGD:Thecc1EG042642" mRNA complement(join(1564069..1565162,1565262..1565375, 1565505..1565856,1565998..1566327,1566440..1566808)) /locus_tag="TCM_042642" /product="WAS/WASL-interacting protein family member 2, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20310.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20310.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07943t00001" CDS complement(join(1565053..1565162,1565262..1565375, 1565505..1565856,1565998..1566327,1566440..1566775)) /locus_tag="TCM_042642" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="WAS/WASL-interacting protein family member 2, putative isoform 1" /protein_id="EOY17951.1" /db_xref="Phytozome:POPTR_0010s20310.1" /db_xref="TAIR:AT2G39870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT34" /translation="MAEQLDDAEFWLPAKFLTDDDIVMEKENLKNKNGGNNTELLIPS HGFPTEFPYEFDSFDSSSALSSPVESVVGSTETESGDEDEFLAGLTRRLAHSTSQKFT VPVLSLDKTEKSGVLASSPQSTLSGLGSWSTSSNGSPNGPSQVPSPPTTPFGAQNDTW DLIYAAAGQVARLKMSNEAPKYTSFNYGRGLPKAQSHAVMRNSSSGLYPSQGLSYNLA QTNQYHGRQEQVLKPQCGAVMARQVKASNWQAQLQQQQQQHIQSRARNNNVVGVRPLG LPQSSWPPLQVQSQQQQQPQHNSGSGMRAMFLSGSGSVKRECAGTGVFLPRRYGNPPE PRKKSGCSTVLLPAKVVQALNLNFDDTNGHVQPHINPSFASNYDALLARRNALLTQAR RGYRPEGGLNHEIHLPQEWTY" mRNA complement(join(1565262..1565856,1565998..1566327, 1566440..1567072)) /locus_tag="TCM_042642" /product="WAS/WASL-interacting protein family member 2, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20310.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20310.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc139t8; inference alignment:Newbler:10:TSA:cgbaB_g07943t00001" CDS complement(join(1565488..1565856,1565998..1566327, 1566440..1566775)) /locus_tag="TCM_042642" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="WAS/WASL-interacting protein family member 2, putative isoform 2" /protein_id="EOY17952.1" /db_xref="Phytozome:POPTR_0010s20310.1" /db_xref="TAIR:AT2G39870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT34" /translation="MAEQLDDAEFWLPAKFLTDDDIVMEKENLKNKNGGNNTELLIPS HGFPTEFPYEFDSFDSSSALSSPVESVVGSTETESGDEDEFLAGLTRRLAHSTSQKFT VPVLSLDKTEKSGVLASSPQSTLSGLGSWSTSSNGSPNGPSQVPSPPTTPFGAQNDTW DLIYAAAGQVARLKMSNEAPKYTSFNYGRGLPKAQSHAVMRNSSSGLYPSQGLSYNLA QTNQYHGRQEQVLKPQCGAVMARQVKASNWQAQLQQQQQQHIQSRARNNNVVGVRPLG LPQSSWPPLQVQSQQQQQPQHNSGSGMRAMFLSGSGSVKRECAGTGVFLPRRYGNPPE PRKKSGINKN" mobile_element 1576931..1577253 /note="source:scaffold_4_CACTA_0482 6057 6387" /mobile_element_type="transposon:TIR/CACTA" gene complement(1577362..1583336) /locus_tag="TCM_042643" /note="dbxref CacaoGD:Thecc1EG042643" mRNA complement(join(1577362..1577748,1578390..1578465, 1579537..1579609,1579994..1580055,1580859..1580947, 1581298..1581372,1581877..1581988,1582187..1582311, 1582445..1582576,1583193..1583336)) /locus_tag="TCM_042643" /product="C22orf13, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06240.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b041172t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g10236t00001" mRNA complement(join(1577618..1577748,1578390..1578465, 1579537..1579609,1579994..1580055,1580859..1580947, 1581298..1581372,1581877..1581988,1582187..1582311, 1582445..1582738,1583193..1583256)) /locus_tag="TCM_042643" /product="C22orf13, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06240.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10236t00001; inference alignment:Newbler:10:TSA:cgbaP2_g10236t00001" CDS complement(join(1577701..1577748,1578390..1578465, 1579537..1579609,1579994..1580055,1580859..1580947, 1581298..1581372,1581877..1581988,1582187..1582311, 1582445..1582606)) /locus_tag="TCM_042643" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="C22orf13, putative isoform 1" /protein_id="EOY17953.1" /db_xref="Phytozome:POPTR_0008s06240.1" /db_xref="TAIR:AT5G05930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SE40" /translation="MWPLYFLLNKILKTDDEEKDGDHMNVGAGCCHFELSSDNRIGHD AVLPRSYFVQVLHINQLFSWDCGLACVLMALTTIGINDCSIQNLAELCCTTSIWTVDL AYLLQKFSVRFSYYTVTFGANPNYSGETYYKEQLPTDLLRVDMLFQKAVEAGINIRCR SISGEEISRWILSGKYIVIALVDQYKLSQSWAGDVIVPGLYGNDGGYTGHYVVICGYD AGADEFEIRDPASSRKHSKVSSKCLEEARKSFGTDEDLLLISLEESRKKQNYSVL" CDS complement(join(1577701..1577748,1578390..1578465, 1579537..1579609,1579994..1580055,1580859..1580947, 1581298..1581372,1581877..1581988,1582187..1582311, 1582445..1582537)) /locus_tag="TCM_042643" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="C22orf13, putative isoform 2" /protein_id="EOY17954.1" /db_xref="Phytozome:POPTR_0008s06240.1" /db_xref="TAIR:AT5G05930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SE40" /translation="MNVGAGCCHFELSSDNRIGHDAVLPRSYFVQVLHINQLFSWDCG LACVLMALTTIGINDCSIQNLAELCCTTSIWTVDLAYLLQKFSVRFSYYTVTFGANPN YSGETYYKEQLPTDLLRVDMLFQKAVEAGINIRCRSISGEEISRWILSGKYIVIALVD QYKLSQSWAGDVIVPGLYGNDGGYTGHYVVICGYDAGADEFEIRDPASSRKHSKVSSK CLEEARKSFGTDEDLLLISLEESRKKQNYSVL" mRNA complement(join(<1578453..1578477,1579537..1579609, 1579994..1580055,1580859..1580947,1581298..1581372, 1581877..1581988,1582187..1582311,1582445..>1582623)) /locus_tag="TCM_042643" /product="Guanylyl cyclase 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06240.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06240.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9884t2; inference alignment:Newbler:10:TSA:cgbaP2_g10236t00001" CDS complement(join(<1578453..1578477,1579537..1579609, 1579994..1580055,1580859..1580947,1581298..1581372, 1581877..1581988,1582187..1582311,1582445..>1582621)) /locus_tag="TCM_042643" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Guanylyl cyclase 1 isoform 3" /protein_id="EOY17955.1" /db_xref="Phytozome:POPTR_0008s06240.1" /db_xref="TAIR:AT5G05930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SE40" /translation="GGGHLMWPLYFLLNKILKTDDEEKDGDHMNVGAGCCHFELSSDN RIGHDAVLPRSYFVQVLHINQLFSWDCGLACVLMALTTIGINDCSIQNLAELCCTTSI WTVDLAYLLQKFSVRFSYYTVTFGANPNYSGETYYKEQLPTDLLRVDMLFQKAVEAGI NIRCRSISGEEISRWILSGKYIVIALVDQYKLSQSWAGDVIVPGLYGNDGGYTGHYVV ICGYDAGADEFEIRDPASSRTMCRKHSK" mRNA complement(join(1579584..1579609,1579945..1580055, 1580859..1580947,1581298..1581372,1581877..1581988, 1582187..1582311,1582445..1582623)) /locus_tag="TCM_042643" /product="Guanylyl cyclase 1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06240.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06240.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9884t7; inference alignment:Newbler:10:TSA:cgbaP2_g10236t00001" CDS complement(join(1579974..1580055,1580859..1580947, 1581298..1581372,1581877..1581988,1582187..1582311, 1582445..1582606)) /locus_tag="TCM_042643" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Guanylyl cyclase 1 isoform 4" /protein_id="EOY17956.1" /db_xref="Phytozome:POPTR_0008s06240.1" /db_xref="TAIR:AT5G05930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SE40" /translation="MWPLYFLLNKILKTDDEEKDGDHMNVGAGCCHFELSSDNRIGHD AVLPRSYFVQVLHINQLFSWDCGLACVLMALTTIGINDCSIQNLAELCCTTSIWTVDL AYLLQKFSVRFSYYTVTFGANPNYSGETYYKEQLPTDLLRVDMLFQKAVEAGINIRCR SISGEEISRWILSGKYIVIALVDQYKLSQSWAGDVIVPGLYGNDGGYTGGCCTR" mobile_element complement(1583166..1583214) /note="source:CACAO_M_E1365_F33_scaffold_1 195 244" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1584430..1585118) /locus_tag="TCM_042644" /note="dbxref CacaoGD:Thecc1EG042644" mRNA complement(1584430..1585118) /locus_tag="TCM_042644" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(1584638..1585024) /locus_tag="TCM_042644" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17957.1" /translation="MRRVLLFQGAFLDLPLSRLLYSISVIIIIIRLNTFRGMDKVFNA LVDSSVSNFSVPNFSNKLPVSFPFAWWNDRSFRKSPWGLLQLQNCRKCLLISSYTLCY LHHSEQFDVHNNAYILSKCLAYAIWS" gene 1584665..1591847 /locus_tag="TCM_042645" /note="dbxref CacaoGD:Thecc1EG042645" mRNA join(1584665..1584923,1588082..1588758,1589016..1589132, 1589248..1589402,1589763..1589837,1589936..1590226, 1590538..1590894,1590989..1591847) /locus_tag="TCM_042645" /product="ROP guanine nucleotide exchange factor 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021824t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20330.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1041t3" mobile_element 1588122..1588215 /note="source:scaffold_8_CACTA_0850 10839 10938" /mobile_element_type="transposon:TIR/CACTA" CDS join(1588392..1588758,1589016..1589132,1589248..1589402, 1589763..1589837,1589936..1590226,1590538..1590894, 1590989..1591525) /locus_tag="TCM_042645" /note="paralog of Thecc1EG021824t1" /codon_start=1 /product="ROP guanine nucleotide exchange factor 5" /protein_id="EOY17958.1" /db_xref="Phytozome:POPTR_0010s20330.1" /db_xref="TAIR:AT5G05940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHI9" /translation="MMEVLLKKKDDWTESVSGLSSCTGESKENSSSSNSSSGSSSGKL VDKVKVSKARGSGSGSGSASPPLLGWPIRRATTANAAVAAITTASTVSKNSDVSNGNG DEVKSSNEDDKFEKLGSKINEIDMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNL CATVFGQLWRLEPIAEEKKSMWKREMEWLVCVSDHIVELIPSWQNFPDGSKLEVMTCR PRSDIFINLPALRKLDNMLLDILDSFTNTEFWYVDQGIIAPDADGSASFRKTLQRQEE KWWLPVPRVPTGGLSDNARKQLNHTRECTNQILKAAMAINGISLSEMEVPDSYLDTLP KNGRACLGDLIYRYITSDQFSAECLLDFLDLSSEHIALEIANRVEASIYVWRRRSHSK PPINPNRSTAKSSWEMVKDLMVDGDKREFLAERAESLLLCLKQRFPALTQTTLDTSKI QCNKDVGKSILESYSRVLESLAYNIVARIDDLLYVDDLTKHSEKVSSIPTVSVIAHKK VSIPYSVPVSSTPYKTAITTPSFSPAPLISPVRGERTPFLKENNNNNNSKPHRRGFGV KRVLTNYLGVDSKAKICGNATDRSSIMNSNSTESSGNQKDHITSKQSSAYQNGTRMRQ VPPRYTVT" gene complement(1592219..1593448) /locus_tag="TCM_042646" /note="dbxref CacaoGD:Thecc1EG042646" mRNA complement(join(1592219..1593113,1593358..1593448)) /locus_tag="TCM_042646" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(1592857..1593113,1593358..1593388)) /locus_tag="TCM_042646" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17959.1" /translation="MDALLCFFLLEFSIGRCDRFKSRRRSHLTKSTRPLTDANKKIDQ TMIDYNDWLCDQLDEGGTKFRKVVRRWLVTIEPINCPSHYPQPTHQQESIN" gene 1593510..1596242 /locus_tag="TCM_042647" /note="dbxref CacaoGD:Thecc1EG042647" mRNA join(1593510..1594305,1595150..1595167,1595467..1595846, 1595948..1596242) /locus_tag="TCM_042647" /product="Maternal effect embryo arrest 60 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20340.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041739t1" /inference="similar to AA sequence:TAIR:AT5G05950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc146t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc146t10" mRNA join(1593685..1594312,1595467..1595846,1595948..1596242) /locus_tag="TCM_042647" /product="Maternal effect embryo arrest 60 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20340.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041739t1" /inference="similar to AA sequence:TAIR:AT5G05950.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc417t3; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9141t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc146t10" CDS join(1593772..1594305,1595150..1595167,1595467..1595502) /locus_tag="TCM_042647" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041739t1" /codon_start=1 /product="Maternal effect embryo arrest 60 isoform 1" /protein_id="EOY17960.1" /db_xref="TAIR:AT5G05950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI91" /translation="MTTSIHVTALDSVVNVNSLFTLAVFIGLTWNPYDSSNTLVNPGS PCFPNLRIAEDLIKFHVYSFSSFLFSSLVALALKQAIKISKSHALNIHINFRGAEFLE HVDVNKSLLRVGMLVSGAGSVAGCVFLMLALVNVVQIKVGTLACGSGHALAAVVPLVI LVPLALLIYVCVGLYAFTLYLLWLFKLFRSVPELH" CDS 1593772..1594311 /locus_tag="TCM_042647" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041739t1" /codon_start=1 /product="Maternal effect embryo arrest 60 isoform 2" /protein_id="EOY17961.1" /db_xref="TAIR:AT5G05950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI91" /translation="MTTSIHVTALDSVVNVNSLFTLAVFIGLTWNPYDSSNTLVNPGS PCFPNLRIAEDLIKFHVYSFSSFLFSSLVALALKQAIKISKSHALNIHINFRGAEFLE HVDVNKSLLRVGMLVSGAGSVAGCVFLMLALVNVVQIKVGTLACGSGHALAAVVPLVI LVPLALLIYVCVGLYAFTR" gene 1594181..1596319 /locus_tag="TCM_042648" /note="dbxref CacaoGD:Thecc1EG042648" mRNA join(1594181..1594312,1595467..1595846,1595948..1596107) /locus_tag="TCM_042648" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1061t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1061t2" mRNA join(1595439..1595827,1595948..1596319) /locus_tag="TCM_042648" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043741t1" /inference="similar to AA sequence:ricco:30143.m001220" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1061t2" CDS join(1595507..1595827,1595948..1596097) /locus_tag="TCM_042648" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30143.m001220; paralog of Thecc1EG043741t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY17962.1" /translation="MGAPMKYTCVVVFLVILSIAGFNGVDGYGPCGKHDIEKEAEKLA PCTKAAQYLEAPVSKRCCTVMEKKLKNPDCLCAIMFSHTARSAGVNPEVAVTIPKRCN IPVRPLSHWFKREDSHGSSSCTKLLGVSSISVRILSLLLVNPVDQFHCDIQPFK" CDS join(1595583..1595846,1595948..1596097) /locus_tag="TCM_042648" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY17963.1" /translation="MDMAHVGNMTSRRKLRSWLLVRRQLNIWKLQFLSVAALSWRKSS RILTACVLLCFLIQLGVLESIQKLLSPFPNAATFLFVPWVTSVELSHWFKREDSHGSS SCTKLLGVSSISVRILSLLLVNPVDQFHCDIQPFK" gene 1597690..1598214 /locus_tag="TCM_042649" /note="dbxref CacaoGD:Thecc1EG042649" mRNA join(1597690..1598035,1598154..1598214) /locus_tag="TCM_042649" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene20871" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021822t1" /inference="similar to AA sequence:frave:gene20871" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3952t1" CDS join(1597708..1598035,1598154..1598170) /locus_tag="TCM_042649" /note="dbxref frave:gene20871; paralog of Thecc1EG021822t1" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein" /protein_id="EOY17964.1" /db_xref="TAIR:AT5G05960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI90" /translation="MKYICFLVFVAILGIAVLNIAEGAGECGRSSPDREAWKLAPCAM AAQDSNAQVSDSCCQQVKKMGQNPRCLCAVMLSNTAKSSGVKPEIAVTIPKRCNIPDR PVGYKCGDYTLP" gene complement(1598600..1601372) /locus_tag="TCM_042650" /note="dbxref CacaoGD:Thecc1EG042650" mRNA complement(join(1598600..1598899,1599108..1599170, 1599275..1599350,1599657..1599826,1600073..1600160, 1600937..1601262)) /locus_tag="TCM_042650" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30143.m001219" /inference="similar to AA sequence:Phytozome:POPTR_0008s06200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11465t00001; inference alignment:Newbler:10:TSA:cgbaB_g11465t00001" mRNA complement(join(1598872..1598913,1599108..1599170, 1599275..1599350,1599657..1599826,1600073..1600160, 1600937..1601372)) /locus_tag="TCM_042650" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30143.m001219" /inference="similar to AA sequence:Phytozome:POPTR_0008s06200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc15t2; alternateUTRof:Thecc1EG042650t1; inference alignment:Newbler:10:TSA:cgbaB_g11465t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1053t2" CDS complement(join(1599154..1599170,1599275..1599350, 1599657..1599826,1600073..1600160,1600937..1601113)) /locus_tag="TCM_042650" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY17965.1" /db_xref="Phytozome:POPTR_0008s06200.1" /translation="MENKSQVCGSSSSSSYSSSSSLSSSSSSVSFDHLFGPKDSSSSS STSGIFGTIFPPPSTVLGRDSSHSGMMGSWNNQGLPHHGKYGNPDHSTDSKGRSSCTT HKDKSSSIYQNETVEPCYFSSSIYYGGQENYSPRKNTNEPQHYFKKDGEDDDPNGNNS SGASRGNWWQGSLYY" CDS complement(join(1599154..1599170,1599275..1599350, 1599657..1599826,1600073..1600160,1600937..1601113)) /locus_tag="TCM_042650" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY17966.1" /db_xref="Phytozome:POPTR_0008s06200.1" /translation="MENKSQVCGSSSSSSYSSSSSLSSSSSSVSFDHLFGPKDSSSSS STSGIFGTIFPPPSTVLGRDSSHSGMMGSWNNQGLPHHGKYGNPDHSTDSKGRSSCTT HKDKSSSIYQNETVEPCYFSSSIYYGGQENYSPRKNTNEPQHYFKKDGEDDDPNGNNS SGASRGNWWQGSLYY" mobile_element 1604824..1604892 /note="source:CACAO_M_S_E14444_F98_scaffold_2 2027 2098" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1605927..1606664) /locus_tag="TCM_042651" /note="dbxref CacaoGD:Thecc1EG042651" mRNA complement(join(1605927..1606165,1606476..1606664)) /locus_tag="TCM_042651" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30143.m001218" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc10623t1" CDS complement(join(1605953..1606165,1606476..1606508)) /locus_tag="TCM_042651" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17967.1" /translation="MLRVGFSNAFEGMQILPPWELYASAVMVKEVNARAHGMPLILAQ RFNAFHGNTSSDLMNNRIPWFSVLTFSLMLNIYIYRY" mobile_element complement(1606180..1606305) /note="source:CACAO_M_E12463_F12_scaffold_3 4649 4701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1606410..1606454 /note="source:scaffold_4_CACTA_0497 1218 1262" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1607415..1607508 /note="source:scaffold_6_CACTA_0713 8912 9010" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1609253..1609297 /note="source:CACAO_M_E427_F230_scaffold_1 1112 1148" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1611248..1619758) /locus_tag="TCM_042652" /note="dbxref CacaoGD:Thecc1EG042652" mRNA complement(join(1611248..1612253,1612420..1612633, 1612724..1612879,1612981..1613167,1613302..1613405, 1613502..1614015,1614119..1614362,1614459..1614550, 1614780..1614868,1616425..1616895,1617116..1617256, 1617335..1617446,1617550..1617673,1617856..1617928, 1618082..1618595,1618703..1618946,1619038..1619132, 1619227..1619758)) /locus_tag="TCM_042652" /product="Subtilisin-like serine endopeptidase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016446001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046952t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016446001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1204t1" CDS complement(join(1611724..1612253,1612420..1612633, 1612724..1612879,1612981..1613167,1613302..1613405, 1613502..1614015,1614119..1614362,1614459..1614550, 1614780..1614868,1616425..1616895,1617116..1617256, 1617335..1617446,1617550..1617673,1617856..1617928, 1618082..1618595,1618703..1618946,1619038..1619132, 1619227..1619300)) /locus_tag="TCM_042652" /note="paralog of Thecc1EG046952t1" /codon_start=1 /product="Subtilisin-like serine endopeptidase family protein" /protein_id="EOY17968.1" /db_xref="Phytozome:GSVIVT01016446001" /db_xref="TAIR:AT5G59100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNS9" /translation="MGDPPKGEFSAATLHNSMIQEIVGSSGASNLLLHSYQRSFNGFA AKLTEEEAEKLAGIKGAVSVFPSQKKKLRTTRSWDFIGFSQHSRRTTLESDIIIGMLD TGIWPESESFSDQEFGPPPKKWKGTCQTSSNFTCNNKIIGAKYYRADGDCPSEDFKSP RDSEGHGSHTASIAAGGLVSRASLYGFRTGTARGGVPSARIAVYKICWFDGCADEDIL AAFDDAIADGVDIISLSVGGFFGSDYFQDSIAIGAFHSMKKGILTSNSAGNGGPYYGS VVNFSPWSLSVGASTIDRKFETKVKLGNGKVFTENFILLSGAEMPRTKKWDTIHPNPG AVGAIIQDDGIKDFAYSFPFPVSNLDLTDGSDVLHYVNTTKNPIATIFRSTEEKDELA PYVVSFSSRGPNPISPDILEPDITAPGAAILAAWSPATTVTGVEGDKRVVPYNIISGT SMSCPHATATNTDLELAYGAGNINPSLAINPGLIYDAGEIDYVKFLCGQGYSDKQIRL VTGDKSRCSKATNGTASNLNYPSFTLFAPSGPHISRDFHRTVTNVGSAVSTYKAIVKA PKELDIQVKPSVLSFKSIGEKKSFVVTIAAKVALPSIVSGALVWDDGVHKVYIVYMGD RPSGEFSAATLHSNILEEVLGSGGSNSLLHSYHRSFNGFVAKLTKDEAQKLASTEGVV SVFPSQRKQLHTTRSWDFMGFSQNVGRTSRESDIIIGMLDTGIWPESESFNDEGFGSP PKKWKGTCQESSNFTCNNKIIGARYYRADGTFGPDDIQSPRDSEGHGTHTSSTAAGAL VSKASLFGLASGTARGGVPSARIAVYKICWSDGCPDEDILAAFDDAIADGVDIISISV GGSIAVNYFDDTIAIGAFHSMKNGILTSNSAGNTGPALATITNVSPWSLSVAASSIDR KFVTQVKLGNGEIYEGVSINTIELKDKMYPLIFGGDAPNTKKGYDSSQSRYCSEDSLD ETLVEGKIVLCDEVSYGEGAIAAGAVGAVMQDYLDSAFNFPLPVSCLGSDDGSEIREI ITLFFFYCFNRKPTATIFKSIQVKDELAPWVVSFSSRGPNPITKDILKPDLTAPGVDI LAAWSQGTTITGVEGDDRVVSYNIISGTSMSCPHATAAAAYIKSFNPTWSPAAIKSAL MTTAVPLSVETNTDAEFAFGSGHLAPSFALSPGLVYDAGEIDYVKFLCGQGYSTKTLR LVTGDRSSCSEAINGTAWDLNYPSFALSASLGKSTKRIFHRILTNVGPAVSIYKAVVQ APRGLEIHVQPRVLSFKSLGQKKSFVVTVTAKVDDNMVSGSLIWEDGVHQVRSPVVAF GFSEE" gene complement(1620365..1624378) /locus_tag="TCM_042653" /note="dbxref CacaoGD:Thecc1EG042653" mRNA complement(join(1620365..1621663,1621816..1622029, 1622105..1622216,1622306..1622524,1622657..1622760, 1622865..1623145,1623265..1623377,1623468..1623709, 1623826..1623919,1624013..1624378)) /locus_tag="TCM_042653" /product="Subtilisin-like serine endopeptidase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046952t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20400.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(1621134..1621663,1621816..1622029, 1622105..1622216,1622306..1622524,1622657..1622760, 1622865..1623145,1623265..1623377,1623468..1623709, 1623826..1623919,1624013..1624086)) /locus_tag="TCM_042653" /note="paralog of Thecc1EG046952t1" /codon_start=1 /product="Subtilisin-like serine endopeptidase family protein" /protein_id="EOY17969.1" /db_xref="Phytozome:POPTR_0010s20400.1" /db_xref="TAIR:AT3G46850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLL6" /translation="MGDLPKGDFSAPSLHTSMLQDVVPSAASDALLYSYKRSFNGFAA KLTKKEAQKLRGEGVVSVFLSQKKQLHTSRSWDFMGFSSRKVERSVIESDIVVGMLDT GIWPESESFNDTGFGPIPAKWKGTCQKSSNFTCNKKIIGARYYRADGEFSPDDFKSPR DAKGHGSHTASTAADILAAFDDAIADGVDIISLSVGGSFASDYFDDSIAIGAFHSMKN GILTSNSAGNGGPDPSSIVNVSPCSLSVAASTIDRKFVTRVKLGNGEIYEGNSINTFD LKGKMYPFIYGGDAPNISEGFTSEDSRYCLPGSLNETLVKGKIVFCEYSSDDEGTTEA GAVGAVFLDEGNKDYAFSYPLPLANLNMDDGRTVLSYLSTTETPTATIYKSIEENNQF APFVVSFSSRGPNPIAADILKPNLTAPGVNILAAWSEATTVTETEDDTRVVPYNIISG TSMSCPHATGAVAYVKSFHPTWSPAAIKSALMTTAFPMTSENNIDSEFAFGAGHINPA LAAQPGLIYDAGEIDYIAFLCGQGYSPKYLQLITGNNSSCSEETNGTVWDLNYPSFAL SATPGKSITGVFHRTVTNVRSAVSTYKAVVKATPGLISQVQPSVLSFNTLGQKQSFVV TVRAEVGNSMKSGSLIWDDGLHQVRSPIVGYASLIK" mobile_element 1622762..1622779 /note="source:scaffold_6_CACTA_0712 1372 1432" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1622780..1622823 /note="source:CACAO_M_E47_F305_scaffold_1 1277 1319" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1625325..1628768) /locus_tag="TCM_046952" /note="dbxref CacaoGD:Thecc1EG046952" mRNA complement(join(1625325..1626139,1626250..1626463, 1626552..1626663,1626766..1626987,1627089..1627192, 1627288..1627801,1627906..1628152,1628226..1628317, 1628415..1628503,1628646..1628768)) /locus_tag="TCM_046952" /product="Subtilisin-like serine endopeptidase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016448001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046953t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016448001" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg987t1" CDS complement(join(1625610..1626139,1626250..1626463, 1626552..1626663,1626766..1626987,1627089..1627192, 1627288..1627801,1627906..1628152,1628226..1628317, 1628415..1628503,1628646..1628741)) /locus_tag="TCM_046952" /note="paralog of Thecc1EG046953t1" /codon_start=1 /product="Subtilisin-like serine endopeptidase family protein" /protein_id="EOY17970.1" /db_xref="Phytozome:GSVIVT01016448001" /db_xref="TAIR:AT5G59100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLL6" /translation="MAVRTSPLAWLMVICFTSSMLVGCHGASDDRQLYIVYMGDLPKG DFSASRLHTNMLQHVVPSAASDALLYSYHRSFNGFAAKLTNKEAQKLRGKEGVVSVFL SQKKQLHTTRSWNFMGFSSRKVERSVIESDVVVGMLDTGIWPESESFNDRGFGPLPAK WKGTCQKSSNFTCNKKIIGARYYRADGVISPDDFKSPRDAEGHGSHTASTAAGGLVSK ASLYGLAKGTARGGVPSARIAVYKICWSDGCYDADILAAFDDAIADGVDIISLSVGAS SASEYFHDSIAIGAFHSMKNGVLTSNSAGNSGPDPASIDNFSPWSLSVAASTIDRKFV TKVKLGNGEIYEGTSINTFDLKEKMYPFIFGGVAPNTSQGFTSEDSRYCLAGTLNETL VKGKIVFCDYDSDRDGPIEGGGAVGAVYQYGGNKDYVSSHPLPLSNLNMDDGRVVFNY VNTTENPTATIFKSYVESNEFAPYVVSFSSRGPNPVTADILKPDLTAPGVDILAAWSE ATSITETEYDNRIVPYNIISGTSMSCPHATGAAAYVKSFHPTWSPAAIKSALMTTAFQ MSAKNNIEGEFAYGAGHINPALAAQPGLIYDAGEIDYIKFLCGQGYSPTYLKLITGNN SSCSEETNGTVWDLNYPSFALSATPGKSITRVFHRTVTNVGSAVSTYKSIVKAPPGLI IQVQPSVLSFKSLGQKQSFVVTVGAEVGNSMISGSLTWDDGLHQVRSPIVAYASLFE" gene complement(1629514..1632741) /locus_tag="TCM_046953" /note="dbxref CacaoGD:Thecc1EG046953" mRNA complement(join(1629514..1630082,1630191..1630404, 1630495..1630606,1630696..1630914,1631027..1631130, 1631226..1631739,1631827..1632070,1632172..1632266, 1632372..1632460,1632578..1632741)) /locus_tag="TCM_046953" /product="Subtilisin-like serine endopeptidase family protein" /inference="alignment:exonerate- protein:2:ricco:30143.m001215.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046952t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016448001" /note="quality class is strong-expertchoice, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(1629553..1630082,1630191..1630404, 1630495..1630606,1630696..1630914,1631027..1631130, 1631226..1631739,1631827..1632070,1632172..1632266, 1632372..1632460,1632578..1632712)) /locus_tag="TCM_046953" /note="paralog of Thecc1EG046952t1" /codon_start=1 /product="Subtilisin-like serine endopeptidase family protein" /protein_id="EOY17971.1" /db_xref="Phytozome:GSVIVT01016448001" /db_xref="TAIR:AT5G59100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLL6" /translation="MAVQTSPLTWLMLFCFTLGLLVCCHGASDDRQAINFFSLGLLFD FVYIVYMGDIPKGDFSAANLHTSMLQDVVPSPAASDVLLYSYHRSFNGFAAKLTKDEA EKLRGKEGVVSVFLSQKKQLHTSWSWDFMGFSKKVKRSVIESDIIVGMLDTGIWPESE SFNDTGFGPIPAKWKGTCQKSSNFTCNKKIIAAKYYRANGDFSPGDFISPRDSEGHGS HTASTAAGGLASRASLYGLAKGTVRGAVPSARIAVYKICWSDGCYDVDILAAFDDAIA DGVDIISLSVGSFFSSDYFDDSIAIGAFHSMKNGVLTSNSAGNSGPRPASIVNFSPWS LSVAASTIDRKFVTKVKLGNGEIYEGTSINTFDLKEKMYPFIFGGVAPNTSQGFTSED SRYCLPGTLNETLVKGKIVFCDYDSDGDGPIEGGAVGAVFQYGGKKDYVFSYPLPLSN LNLDDGRFVLNYVNTTENPTATIFKSDVESNEFAPYVVSFSSRGPNPVTADILKPDLT APGVDILAAWSEAAHVTESEYDNRIVPYNIISGTSMSCPHATGAAAYVKSFHPTWSPA AIKSALMTTAFQMSAKNNIEGEFAFGAGHINPALAAQPGLIYDAGEIEYIKFLCGQGY SPTYLQLITGNNSSCSEETNGTVWDLNYPSFALSATPGKSITRAFHRTVTNVGSAVST YKAVVKAPPGLIIQVQPSVLSFKSLGQKQSFVVTVGAEVGNSMISGSLTWDDGLYQVR SPIVAYASLIE" gene 1632830..1640014 /locus_tag="TCM_042655" /note="dbxref CacaoGD:Thecc1EG042655" mRNA join(1632830..1632887,1637528..1638230,1638488..1638783, 1639095..1640014) /locus_tag="TCM_042655" /product="NAC domain protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017070t1" /inference="similar to AA sequence:frave:gene14711" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS join(1637783..1638230,1638488..1638783,1639095..1639745) /locus_tag="TCM_042655" /note="dbxref frave:gene14711; paralog of Thecc1EG017070t1" /codon_start=1 /product="NAC domain protein, putative" /protein_id="EOY17972.1" /db_xref="TAIR:AT1G69490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIE3" /translation="MMEQGEEGDQGYQGFVLPKFTPNGQGDQGFMPPEFTSNGQGDHG DQGFVLPNFTPNGQGDQGFVLPMFNPNGQGDQGDQGFVLPRYTPNGLVITNEKEFLDT LPPGYRFKPRDEELVVHYLRKKAHNKPLPPNIIKEVELYKHSPDELTRDQNNNKSTKP VTEWYFFTPRERKYCNGLRPNRAAGDGFWKATGADTSVRFQGTIVGFKKTLVFYRGKP PKGEKTTWIMHEFVLSNPPERKRGSKDDMRLDDWVLCRLYKKHGNNTRVVTPQQDPDP DPKQEEENAIQATDYTETLEQEYWNIPPQYMLPQQTCPMPPYVVYPDSTSVLPRSMPP YNAYAADSTSVLLRSMPPYNAYSDSTSGLPSSMPPYNAYPDSPSGLPRFPESLDPMLQ HQSAVFPQQAMTVYDNFIPTAAPTLSIPPHFVGHHYPLNSYQQQPFSGVRNNIKFSAD DKYLLNIDFGLPNV" mobile_element 1640060..1644715 /note="source:INTACT643_F283_scaffold_2-int 23 4728" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1644748..1652068) /locus_tag="TCM_042656" /note="dbxref CacaoGD:Thecc1EG042656" mRNA complement(join(1644748..1645273,1645366..1645552, 1649579..1649605,1649691..1649808,1649918..1650136, 1650351..1650454,1651982..1652068)) /locus_tag="TCM_042656" /product="Subtilisin-like serine endopeptidase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042660t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016456001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS complement(join(1644753..1645273,1645366..1645552, 1649579..1649605,1649691..1649808,1649918..1650136, 1650351..1650418)) /locus_tag="TCM_042656" /note="paralog of Thecc1EG042660t2" /codon_start=1 /product="Subtilisin-like serine endopeptidase family protein, putative" /protein_id="EOY17973.1" /db_xref="Phytozome:GSVIVT01016456001" /db_xref="TAIR:AT5G59100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLL6" /translation="MYPIIHGGSAPNTTGNFTWASSRNCLQNSLDRNLVKGKIVLCDR FVSGREPLRAGAVGTLLRDNAPNDDASLFPLPASYLDLVDGSKIFVYVNSTSCGTLTA TIFKSKEANDSLAPYVVSCSSSGPNPITPDILKPDLSAPGVHILAAWSLISPVSETKG DNRLEPFNIISGTSMACPHVSAVAAYVKSFHPTWSPAALKSALMTTAFLMIFGINLDA EFAYGSSHLNPIKAVNPGLVYDSEEVDYINFLCGQGYSTRFLQLVTRDNATCSEATNG TVWDLNYPSFSLFTSLLKPVSRTFNRTVTNVASPMSTYTATVSAPAGALKIQVNPNVL SFTSLRQKLSFVLTIEGTTEKAIVSASLEWDDGVHKVRSPIIVFI" gene complement(1645533..1660966) /locus_tag="TCM_042657" /note="dbxref CacaoGD:Thecc1EG042657" mRNA complement(join(1645533..1645575,1645661..1645776, 1645911..1646129,1646279..1646376,1646623..1647124, 1660868..1660966)) /locus_tag="TCM_042657" /product="Subtilase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042659t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016456001" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8382t5" CDS complement(join(1646012..1646129,1646279..1646376, 1646623..1646781)) /locus_tag="TCM_042657" /note="paralog of Thecc1EG042659t2" /codon_start=1 /product="Subtilase family protein, putative" /protein_id="EOY17974.1" /db_xref="Phytozome:GSVIVT01016456001" /db_xref="TAIR:AT5G59190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLL6" /translation="MKNGVLTVISAGNDGPERSTISNFSPWSFAVAASTIDRKFFTKV QLGNSNIYEGVSINTFDLQNKMYPMIYGGDAASPNASRSSARYCNQNSLDQNLVKGKI VLCDKLSRGRGPFLAGAVGTVM" mobile_element complement(1648725..1649264) /note="source:INTACT36_F116_scaffold_6-int 7020 7562" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1650854..1653357) /note="source:CACAO_on_SS_E42_scaffold_2 19431 21943" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1653360..1658839) /note="source:INTACT782_F329_scaffold_10-int 1 5480" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1659679..1659957 /note="source:INTACT54_F25_scaffold_7-int 1 270" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1660065..1667653) /locus_tag="TCM_042659" /note="dbxref CacaoGD:Thecc1EG042659" mRNA complement(join(1660065..1660678,1661072..1661183, 1661318..1661536,1661685..1661782,1662029..1662542, 1666588..1666834,1666905..1666999,1667328..1667416, 1667575..1667653)) /locus_tag="TCM_042659" /product="Subtilisin-like serine endopeptidase family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g06990.1.3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016448001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042660t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016456001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7678t10; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7678t8; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc272t11_C2" mRNA complement(join(1660065..1660678,1661072..1661183, 1661318..1661536,1661685..1661782,1662029..1662542, 1662647..1662893,1662963..1663057,1663135..1663223, 1663377..1663492)) /locus_tag="TCM_042659" /product="Subtilisin-like serine endopeptidase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g06990.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042660t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016456001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7678t8; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7678t8" CDS complement(join(1660157..1660678,1661072..1661183, 1661318..1661536,1661685..1661782,1662029..1662542, 1666588..1666834,1666905..1666999,1667328..1667401)) /locus_tag="TCM_042659" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042660t2" /codon_start=1 /product="Subtilisin-like serine endopeptidase family protein, putative isoform 3" /protein_id="EOY17977.1" /db_xref="Phytozome:GSVIVT01016456001" /db_xref="TAIR:AT5G03620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLL6" /translation="MGKKPSGGSSTSSLHNSMLQDAFGSEFDMKSVLCTYKRSFDGFV VQLTEEEASKMAGMNGVVSVFPNEKRDLHTTRSWDFMGFSQQVERSASESDVIIGVLD TGIWPESESFNDKGFGPPPRKWKGNCQTAGGNFTCNNKIIGGQYYRSVGFFGPNDINS PRDSDGHGTHTASTAAGKLVDRASLFGFGSGTARGGVPSARIAAYKICWSDGCDYADI LAAFDDAIADGVDIISLSVGGHSPEDYFRDPIAIGAFHAMKNGVLTVISAGNDGPERS TISNFSPWSLAVAASTIDRKFFTKVQLGNSKIYEGVSINTFDLQNKMYPMIYGGDAAS PNATRSFARFCFQNSLDQNLVKGKIVLCDTLSRGRGPFSAGAVGTVMRDQLPNDNARS FPLPASYLDLVDGSKIFAYINSTSTPTATIFKSNEANDSLAPYVVSFSSRGPNPITPD ILKAFPMSSGINLDAEFAYGSGNLNPIKAVNPGLVYDSEEVDYIKFLCGQGYSTRFLQ LVTRDNATCSEATNGTVWDLNYPSFALFTSPLKPVSRTFNRTVTNVGSPMSTYTATVT APAGALKIQVNPNVLSFTSLGQKLSFELAIEGTTDKAIVSASLEWDDGVHKVRSPIIV FI" CDS complement(join(1660157..1660678,1661072..1661183, 1661318..1661536,1661685..1661782,1662029..1662542, 1662647..1662893,1662963..1663057,1663135..1663223, 1663377..1663484)) /locus_tag="TCM_042659" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042660t2" /codon_start=1 /product="Subtilisin-like serine endopeptidase family protein, putative isoform 1" /protein_id="EOY17975.1" /db_xref="Phytozome:GSVIVT01016456001" /db_xref="TAIR:AT5G03620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLL6" /translation="MKGRKYLLPRLLLHGVLLALLTSRAASHSQSNTNRKSYIVYMGD RPSDGTSTSLLHSSMLQDVYGSNVIKKSVLYSYKRSFNGFVVELTEEEARKMAGMNGV VSVFPNEKKNLHTTRSWDFMGFSQQVERAALESDVIIGVLDTGIWPESESFNDQGLGP PPKKWKGSCQTAGGNFTCNNKIIGGQYYRSVGFFGPNDINSPRDSDGHGTHTASTAAG KLVDRASLFGFGSGTARGGVPSARIAAYKICWSDGCDYADILAAFDDAIADGVDIISL SVGGHSPEDYFRDPIAIGAFHAMKNGVLTVISAGNDGPERSTISNFSPWSLAVAASTI DRKFFTKVQLGNSKIYEGVSINTFDLQNKMYPMIYGGDAASPNATRSFARFCFQNSLD QNLVKGKIVLCDTLSRGRGPFSAGAVGTVMRDQLPNDNARSFPLPASYLDLVDGSKIF AYINSTSTPTATIFKSNEANDSLAPYVVSFSSRGPNPITPDILKAFPMSSGINLDAEF AYGSGNLNPIKAVNPGLVYDSEEVDYIKFLCGQGYSTRFLQLVTRDNATCSEATNGTV WDLNYPSFALFTSPLKPVSRTFNRTVTNVGSPMSTYTATVTAPAGALKIQVNPNVLSF TSLGQKLSFELAIEGTTDKAIVSASLEWDDGVHKVRSPIIVFI" mRNA complement(join(<1660940..1660986,1661072..1661183, 1661318..1661536,1661685..1661782,1662029..1662542, 1662647..1662893,1662963..1663057,1663135..1663223, 1663377..>1663447)) /locus_tag="TCM_042659" /product="Subtilisin-like serine endopeptidase family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g06990.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042660t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016456001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8382t8; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8382t8; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7678t8" CDS complement(join(<1660942..1660986,1661072..1661183, 1661318..1661536,1661685..1661782,1662029..1662542, 1662647..1662893,1662963..1663057,1663135..1663223, 1663377..>1663445)) /locus_tag="TCM_042659" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042660t2" /codon_start=1 /product="Subtilisin-like serine endopeptidase family protein, putative isoform 2" /protein_id="EOY17976.1" /db_xref="Phytozome:GSVIVT01016456001" /db_xref="TAIR:AT5G59100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLL6" /translation="HGVLLALLTSRAASHSQSNTNRKSYIVYMGDRPSDGTSTSLLHS SMLQDVYGSNVIKKSVLYSYKRSFNGFVVELTEEEARKMAGMNGVVSVFPNEKKNLHT TRSWDFMGFSQQVERAALESDVIIGVLDTGIWPESESFNDQGLGPPPKKWKGSCQTAG GNFTCNNKIIGGQYYRSVGFFGPNDINSPRDSDGHGTHTASTAAGKLVDRASLFGFGS GTARGGVPSARIAAYKICWSDGCDYADILAAFDDAIADGVDIISLSVGGHSPEDYFRD PIAIGAFHAMKNGVLTVISAGNDGPERSTISNFSPWSLAVAASTIDRKFFTKVQLGNS KIYEGVSINTFDLQNKMYPMIYGGDAASPNATRSFARFCFQNSLDQNLVKGKIVLCDT LSRGRGPFSAGAVGTVMRDQLPNDNARSFPLPASYLDLVDGSKIFAYINSTSTPTATI FKSNEANDSLAPYVVSFSSRGPNPITPDILKPDLSAPGVHILAAWS" mRNA complement(join(1660963..1661183,1661318..1661536, 1661685..1661782,1662029..1662542,1662647..1662893, 1662963..1663057,1663135..1663223,1663377..1663492)) /locus_tag="TCM_042659" /product="Subtilisin-like serine endopeptidase family protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g06990.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042660t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016456001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc308t7; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8382t8; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7678t8" CDS complement(join(1661063..1661183,1661318..1661536, 1661685..1661782,1662029..1662542,1662647..1662893, 1662963..1663057,1663135..1663223,1663377..1663484)) /locus_tag="TCM_042659" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042660t2" /codon_start=1 /product="Subtilisin-like serine endopeptidase family protein, putative isoform 4" /protein_id="EOY17978.1" /db_xref="Phytozome:GSVIVT01016456001" /db_xref="TAIR:AT5G59100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLL6" /translation="MKGRKYLLPRLLLHGVLLALLTSRAASHSQSNTNRKSYIVYMGD RPSDGTSTSLLHSSMLQDVYGSNVIKKSVLYSYKRSFNGFVVELTEEEARKMAGMNGV VSVFPNEKKNLHTTRSWDFMGFSQQVERAALESDVIIGVLDTGIWPESESFNDQGLGP PPKKWKGSCQTAGGNFTCNNKIIGGQYYRSVGFFGPNDINSPRDSDGHGTHTASTAAG KLVDRASLFGFGSGTARGGVPSARIAAYKICWSDGCDYADILAAFDDAIADGVDIISL SVGGHSPEDYFRDPIAIGAFHAMKNGVLTVISAGNDGPERSTISNFSPWSLAVAASTI DRKFFTKVQLGNSKIYEGVSINTFDLQNKMYPMIYGGDAASPNATRSFARFCFQNSLD QNLVKGKIVLCDTLSRGRGPFSAGAVGTVMRDQLPNDNARSFPLPASYLDLVDGSKIF AYINSTSTPTATIFKSNEANDSLAPYVVSFSSRGPNPITPDILKVS" gene complement(1663592..1667693) /locus_tag="TCM_042660" /note="dbxref CacaoGD:Thecc1EG042660" mRNA complement(join(1663592..1664636,1664731..1664944, 1665030..1665141,1665258..1665476,1665691..1665794, 1665967..1666480,1666588..1666834,1666905..1666999, 1667328..1667415)) /locus_tag="TCM_042660" /product="Subtilisin-like serine endopeptidase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016448001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046952t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016456001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1012t1" mRNA complement(join(1663878..1664636,1664731..1664944, 1665030..1665141,1665258..1665476,1665691..1665794, 1665967..1666480,1666588..1666834,1666905..1666999, 1667328..1667416,1667575..1667693)) /locus_tag="TCM_042660" /product="Subtilisin-like serine endopeptidase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016448001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046952t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016456001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1012t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1012t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc272t11_C2" CDS complement(join(1664107..1664636,1664731..1664944, 1665030..1665141,1665258..1665476,1665691..1665794, 1665967..1666480,1666588..1666834,1666905..1666999, 1667328..1667416,1667575..1667670)) /locus_tag="TCM_042660" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046952t1" /codon_start=1 /product="Subtilisin-like serine endopeptidase family protein isoform 2" /protein_id="EOY17980.1" /db_xref="Phytozome:GSVIVT01016456001" /db_xref="TAIR:AT5G59100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLL6" /translation="MGGKRSLLPCLLLHGLILALITIRAASQPDRKSYIVYMGKKPSG GSSTSSLHNSMLQDAFGSEFDMKSVLCTYKRSFDGFVVQLTEEEASKMAGMNGVVSVF PNEKRDLHTTRSWDFMGFSQQVERSASESDVIIGVLDTGIWPESESFNDKGFGPPPRK WKGNCQTAGGNFTCNNKIIGAQYYRSDGLFGPDDIVSPRDASGHGTHTASTAAGGLVN RASLFGFASGTARGGVPSARIAVYKICWFDGCYDADILAAFDDAIADGVDIISLSVGA ATPKDYFNDSIAIGAFHAMRNGVLTVNSAGNQGPDRATITNFSPWALSVAASTIDRKF FTKVQLGNNMIYEGVSINTFDLKNEMYPIIHGGSAPNTTGNFTWASSRNCFQNSLDRN LVKGKIVLCDRLVSGREPLRAGAVGTVLRDNAPNDDARLFPLPASYLDLVDGSKIFVY VNSTSTPTATIFKSKEANDSLAPYVVSFSSRGPNPITPDILKPDISAPGVHILAAWSL ISPVSQTKGDNRFVPFNIISGTSMACPHVSAAAAYVKSFHPTWSPAAIKSALMTTAFP MSSGINLDAEFAYGSGHLNPIKAVDPGLVYDSEELDYIKFLCGQGYGTQFLQLVTRDN TTCSEATNGTVWGLNYPSFALFTSASTTVSRVFNRTVTNVGSPMSIYRANVTAPAGAL KIQVNPNVLSFKSLGQKLSFSLTIEGTIDKSIVSASLEWDDGVHKVRSPITAFVSIS" CDS complement(join(1664107..1664636,1664731..1664944, 1665030..1665141,1665258..1665476,1665691..1665794, 1665967..1666480,1666588..1666834,1666905..1666999, 1667328..1667401)) /locus_tag="TCM_042660" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046952t1" /codon_start=1 /product="Subtilisin-like serine endopeptidase family protein isoform 1" /protein_id="EOY17979.1" /db_xref="Phytozome:GSVIVT01016456001" /db_xref="TAIR:AT5G59190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLL6" /translation="MGKKPSGGSSTSSLHNSMLQDAFGSEFDMKSVLCTYKRSFDGFV VQLTEEEASKMAGMNGVVSVFPNEKRDLHTTRSWDFMGFSQQVERSASESDVIIGVLD TGIWPESESFNDKGFGPPPRKWKGNCQTAGGNFTCNNKIIGAQYYRSDGLFGPDDIVS PRDASGHGTHTASTAAGGLVNRASLFGFASGTARGGVPSARIAVYKICWFDGCYDADI LAAFDDAIADGVDIISLSVGAATPKDYFNDSIAIGAFHAMRNGVLTVNSAGNQGPDRA TITNFSPWALSVAASTIDRKFFTKVQLGNNMIYEGVSINTFDLKNEMYPIIHGGSAPN TTGNFTWASSRNCFQNSLDRNLVKGKIVLCDRLVSGREPLRAGAVGTVLRDNAPNDDA RLFPLPASYLDLVDGSKIFVYVNSTSTPTATIFKSKEANDSLAPYVVSFSSRGPNPIT PDILKPDISAPGVHILAAWSLISPVSQTKGDNRFVPFNIISGTSMACPHVSAAAAYVK SFHPTWSPAAIKSALMTTAFPMSSGINLDAEFAYGSGHLNPIKAVDPGLVYDSEELDY IKFLCGQGYGTQFLQLVTRDNTTCSEATNGTVWGLNYPSFALFTSASTTVSRVFNRTV TNVGSPMSIYRANVTAPAGALKIQVNPNVLSFKSLGQKLSFSLTIEGTIDKSIVSASL EWDDGVHKVRSPITAFVSIS" gene 1670705..1672749 /locus_tag="TCM_042661" /note="dbxref CacaoGD:Thecc1EG042661" mRNA join(1670705..1670746,1671046..1671239,1671881..1672749) /locus_tag="TCM_042661" /product="RAB GTPase A2B" /inference="alignment:exonerate- protein:2:ricco:30143.m001211" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041747t1" /inference="similar to AA sequence:ricco:30143.m001211" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1938t1" CDS join(1671075..1671239,1671881..1672369) /locus_tag="TCM_042661" /note="dbxref ricco:30143.m001211; paralog of Thecc1EG041747t1" /codon_start=1 /product="RAB GTPase A2B" /protein_id="EOY17981.1" /db_xref="TAIR:AT1G07410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39572" /translation="MAYKVDHEYDYLFKVVLIGDSGVGKSNILSRFTRNEFCLESKST IGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN VQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSSEDAESLAEKESLSFLETSALESF NIEKAFQTVLLDIYQIISKKALAAQEAASTTGLPQGTTINVSNLSGNENKRSACCST" gene 1674802..1678577 /locus_tag="TCM_042662" /note="dbxref CacaoGD:Thecc1EG042662" mRNA join(1674802..1675420,1676577..1676794,1676932..1677476, 1677571..1678577) /locus_tag="TCM_042662" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:ricco:47284.m000040" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021832t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s06140.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1000t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg998t1" CDS join(1675276..1675420,1676577..1676794,1676932..1677476, 1677571..1678453) /locus_tag="TCM_042662" /note="paralog of Thecc1EG021832t2" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY17982.1" /db_xref="Phytozome:POPTR_0008s06140.1" /db_xref="TAIR:AT2G37900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M331" /translation="MEQEAKRQDAKDEGRDEEKWVHDSSVNHKGKVPLRASTGVWKAS LFIITIEFSERLSYFGIATNLISYLTNVLHQDLETAAKNVNYWAGVTTIMPLAGGFLA DAYFGRFTMVLLSSLIYLLGLSLLTMSEFIPVIKPCNAGACHKPRKIHEVLFFLALYF ISLGTGGHKPCLESFGADQFDDDHLEERKQKMSYFNWWNFALCCGLLLGVIVIVYVQD KVSWGVADLILTIVMAVTILTFYMGKIYYRYRLPEGSPLTPLLQVLVAAIRKRKLPYP SNPSLLYEVPRLKLSQGRLLCHTSRLRFLDKAAIVEDRENTSTEKTHNPWRLATVTKV EEMKLVLSMIPIWLTSLIFGVGVAQASTFFVKQAATMDRRITHNFDIPPASIYSLTAV GMMVSVTIYEKILVPFLRKVTSNERGINILQRIGIGMIFSTLSMVAAACVEMKRLKAV EKEIMQGGKQVALSMSVFWLAPQYLINGLGDGFALVGLQEYFYDQAPDSMRSLGIAFY LSVIGVGSFLSSFLIIIVDHITRKGGKSWIGKDLNISRLDNFYWMLAAINLLNFCAYI FLARSYTYKNVERGILVPDCPKSDEAELIV" gene 1678733..1682654 /locus_tag="TCM_042663" /note="dbxref CacaoGD:Thecc1EG042663" mRNA join(1678733..1679741,1681341..1681711,1681805..1681865, 1681977..1682654) /locus_tag="TCM_042663" /product="POX family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021834t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20480.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1006t2" CDS join(1679136..1679741,1681341..1681711,1681805..1681865, 1681977..1682450) /locus_tag="TCM_042663" /note="paralog of Thecc1EG021834t1" /codon_start=1 /product="POX family protein, putative" /protein_id="EOY17983.1" /db_xref="Phytozome:POPTR_0010s20480.1" /db_xref="TAIR:AT5G02030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SE26" /translation="MEGSYNQPLHIPQQNRRNRLRVTIGTNQEEEQASQAPLLQLNQP ALLCPSSSQPTFMHTFPQSLCSSTMQNPRDVNYQFFDDQGLSLSLSFQHQDNMNLPLN LDAQKSNENSILGGFLKQNCQMRSSVPLGPFTGYASVLKSSRFLTPAQQILDDFCGVD YRVLDFPLESLGDGDVGKDPITCSDKIQHRWKNSRLVLMLDEVYRKYKLYCQQMQSVV ASFKCVSGLGNAAPYVCFAFKAIAKHFSCLKSAILNQIRFTDKTADNAVVGKDNNVPS LWTSDQGISNQNPVQNVTFLQHPLWRSQRGLPDQAVAVLKTWLFEHFLHPYPTDSEKL MLARQTGLSRTQVSNWFINARVRLWKPMVEEIHMLELRQSQKPSSEATNQDAKLPSEL LVDKLPHFIASQEVENIQNKRPRNNIFYPDEQSKLQKSALAYTSLPSNHHLGVGTSNF CLALSLNQDNNGIDFSTPPMPMNLCHNFNFKTDGELSLKAGFDVERQHHGKNF" gene 1683003..1688497 /locus_tag="TCM_042664" /note="dbxref CacaoGD:Thecc1EG042664" mRNA join(1683003..1683401,1684150..1684326,1684484..1684633, 1685030..1685202,1685309..1685376,1687426..1687896, 1688106..1688497) /locus_tag="TCM_042664" /product="Mitochondrial substrate carrier family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021836t1" /inference="similar to AA sequence:frave:gene20864" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09099t00001" mRNA join(1683012..1683401,1684150..1684326,1684484..1684633, 1685030..1685202,1685309..1685376,1685856..1686183, 1687426..1687604) /locus_tag="TCM_042664" /product="Mitochondrial substrate carrier family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021836t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016459001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1209t3; alternateUTRof:Thecc1EG042664t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1209t2; inference alignment:Newbler:10:TSA:cgbaB_g09099t00001" mRNA join(1683012..1683401,1684150..1684326,1684484..1684633, 1685030..1685202,1685309..1685376,1685856..1685962, 1686091..1686183,1687426..1687604) /locus_tag="TCM_042664" /product="Mitochondrial substrate carrier family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021836t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016459001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1209t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1209t2; inference alignment:Newbler:10:TSA:cgbaB_g09099t00001" mRNA join(1683012..1683401,1684150..1684326,1684484..1684633, 1685030..1685202,1685309..1685376,1685856..1685962, 1686131..1686183,1687426..1687577) /locus_tag="TCM_042664" /product="Mitochondrial substrate carrier family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021836t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016459001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1209t1; alternateUTRof:Thecc1EG042664t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1209t2; inference alignment:Newbler:10:TSA:cgbaB_g09099t00001" CDS join(1683174..1683401,1684150..1684326,1684484..1684633, 1685030..1685202,1685309..1685376,1687426..1687667) /locus_tag="TCM_042664" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene20864; paralog of Thecc1EG021836t1" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 1" /protein_id="EOY17984.1" /db_xref="TAIR:AT3G55640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W4M2" /translation="MQTEARVGVVNPGHGGGGGKSGVDTTALKFKQQQQELLQAQKTQ IGTVSQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDAATLRKASIWREASRIVGE EGFRAFWKGNLVTIAHRLPYSSLNFYAYERYKKLLYMLPGLESHSEHMSTDLCIHFLG GGLAGITAASATYPLDLVRTRLAAQTNVLYYRGIGHALQTICKEEGVLGLYKGLGATL LGVGPSIAISFSVYESLRSFWQSQRPHDSTVLVSLSCGSLSGIASSTAIFPLDLIRRR KQLEGAGGRAQVYTTGLFGTFKHIFRTEGFRGLYRGIVPEYYKVVPGVGICFMTYETL KMLLADVTAKL" CDS join(1683174..1683401,1684150..1684326,1684484..1684633, 1685030..1685202,1685309..1685376,1685856..1685887) /locus_tag="TCM_042664" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021836t1" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 2" /protein_id="EOY17985.1" /db_xref="Phytozome:GSVIVT01016459001" /db_xref="TAIR:AT3G55640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W4M2" /translation="MQTEARVGVVNPGHGGGGGKSGVDTTALKFKQQQQELLQAQKTQ IGTVSQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDAATLRKASIWREASRIVGE EGFRAFWKGNLVTIAHRLPYSSLNFYAYERYKKLLYMLPGLESHSEHMSTDLCIHFLG GGLAGITAASATYPLDLVRTRLAAQTNVLYYRGIGHALQTICKEEGVLGLYKGLGATL LGVGPSIAISFSVYESLRSFWQSQRPHDSTVLVSLSCGSLSGIASSTEKQAVVQALH" CDS join(1683174..1683401,1684150..1684326,1684484..1684633, 1685030..1685202,1685309..1685376,1685856..1685887) /locus_tag="TCM_042664" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021836t1" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 2" /protein_id="EOY17986.1" /db_xref="Phytozome:GSVIVT01016459001" /db_xref="TAIR:AT3G55640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W4M2" /translation="MQTEARVGVVNPGHGGGGGKSGVDTTALKFKQQQQELLQAQKTQ IGTVSQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDAATLRKASIWREASRIVGE EGFRAFWKGNLVTIAHRLPYSSLNFYAYERYKKLLYMLPGLESHSEHMSTDLCIHFLG GGLAGITAASATYPLDLVRTRLAAQTNVLYYRGIGHALQTICKEEGVLGLYKGLGATL LGVGPSIAISFSVYESLRSFWQSQRPHDSTVLVSLSCGSLSGIASSTEKQAVVQALH" CDS join(1683174..1683401,1684150..1684326,1684484..1684633, 1685030..1685202,1685309..1685376,1685856..1685887) /locus_tag="TCM_042664" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021836t1" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 2" /protein_id="EOY17987.1" /db_xref="Phytozome:GSVIVT01016459001" /db_xref="TAIR:AT3G55640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W4M2" /translation="MQTEARVGVVNPGHGGGGGKSGVDTTALKFKQQQQELLQAQKTQ IGTVSQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDAATLRKASIWREASRIVGE EGFRAFWKGNLVTIAHRLPYSSLNFYAYERYKKLLYMLPGLESHSEHMSTDLCIHFLG GGLAGITAASATYPLDLVRTRLAAQTNVLYYRGIGHALQTICKEEGVLGLYKGLGATL LGVGPSIAISFSVYESLRSFWQSQRPHDSTVLVSLSCGSLSGIASSTEKQAVVQALH" gene complement(1688499..1694518) /locus_tag="TCM_042666" /note="dbxref CacaoGD:Thecc1EG042666" mRNA complement(join(1688499..1689146,1689239..1689297, 1689975..1690090,1690195..1690257,1690335..1690547, 1690699..1690818,1690948..1691031,1691175..1691295, 1692616..1692742,1692863..1692950,1693337..1693521, 1694096..1694518)) /locus_tag="TCM_042666" /product="DA1-related protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016461001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000474t11" /inference="similar to AA sequence:ricco:30143.m001206" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1030t2" mRNA complement(join(1688534..1689146,1689239..1689297, 1689975..1690090,1690195..1690257,1690335..1690547, 1690699..1690818,1690948..1691031,1691175..1691295, 1692616..1692742,1692863..1692950,1693337..1693497, 1694096..1694186)) /locus_tag="TCM_042666" /product="DA1-related protein 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016461001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000474t11" /inference="similar to AA sequence:ricco:30143.m001206" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1030t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1030t2" CDS complement(join(1688824..1689146,1689239..1689297, 1689975..1690090,1690195..1690257,1690335..1690547, 1690699..1690818,1690948..1691031,1691175..1691295, 1692616..1692742,1692863..1692950,1693337..1693497, 1694096..1694171)) /locus_tag="TCM_042666" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30143.m001206; paralog of Thecc1EG000474t11" /codon_start=1 /product="DA1-related protein 2 isoform 2" /protein_id="EOY17989.1" /db_xref="TAIR:AT2G39830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WSN2" /translation="MAPPPPPPPPPPPSNVNHLSHPCIYERKSRLMKWLGKLFKTSSS SRRGGGSSGGSGTGGYNPHYLGEENMVVRAPARMPDGCPRVRKEQEELDHAMALSLSE GLGKPSGYNEWWMDDNYGGALPRAADGGRMNSSTYPRYGTMQFHPSGNRVCSGCHYDI GYGNYLGCMGVYFHPNCFRCHSCGNPITEHEFSLSGRDPYHKTCFKELTHPKCEVCLE FIPTNENNLIEYRCHPFWSQKYCPSHEHDHTARCCSCERLESWNVRYYSLEDGRSLCL ECMESAIMDTGDCQPLYHAIRDYYEGLNMRLDQQIPMLLVERQTLNEAIVGEKNGYHH MPETRGLCLSEEQTVTSILKRPRIGGRQLIGLRTQPQKLTRKCEVTAILVLYGLPRLL TGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVLPGSSSNRASSSAAA SSSSSSSKKGEKSNVENKLGEFFMHQIANDSSPAYGGGFRAANAAVNKYGLRRTLDHI RLTGNFPL" CDS complement(join(1688824..1689146,1689239..1689297, 1689975..1690090,1690195..1690257,1690335..1690547, 1690699..1690818,1690948..1691031,1691175..1691295, 1692616..1692742,1692863..1692950,1693337..1693521, 1694096..1694171)) /locus_tag="TCM_042666" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30143.m001206; paralog of Thecc1EG000474t11" /codon_start=1 /product="DA1-related protein 2 isoform 1" /protein_id="EOY17988.1" /db_xref="TAIR:AT2G39830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WSN2" /translation="MAPPPPPPPPPPPSNVNHLSHPCIYGDFASSYTERKSRLMKWLG KLFKTSSSSRRGGGSSGGSGTGGYNPHYLGEENMVVRAPARMPDGCPRVRKEQEELDH AMALSLSEGLGKPSGYNEWWMDDNYGGALPRAADGGRMNSSTYPRYGTMQFHPSGNRV CSGCHYDIGYGNYLGCMGVYFHPNCFRCHSCGNPITEHEFSLSGRDPYHKTCFKELTH PKCEVCLEFIPTNENNLIEYRCHPFWSQKYCPSHEHDHTARCCSCERLESWNVRYYSL EDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGLNMRLDQQIPMLLVERQTLNEAIV GEKNGYHHMPETRGLCLSEEQTVTSILKRPRIGGRQLIGLRTQPQKLTRKCEVTAILV LYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVLPGSSSN RASSSAAASSSSSSSKKGEKSNVENKLGEFFMHQIANDSSPAYGGGFRAANAAVNKYG LRRTLDHIRLTGNFPL" mobile_element 1691669..1692453 /note="source:scaffold_4_CACTA_0511 2617 3361" /mobile_element_type="transposon:TIR/CACTA" gene complement(1696881..1697528) /locus_tag="TCM_042667" /note="dbxref CacaoGD:Thecc1EG042667" mRNA complement(join(1696881..1697054,1697209..1697330, 1697496..1697528)) /locus_tag="TCM_042667" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1152t1" CDS complement(join(1696925..1697054,1697209..1697273)) /locus_tag="TCM_042667" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17990.1" /translation="MLVIANLFTIPSQTIMKDWSSRYIVSFLGQRVCFSEEQILTSEG VFLIRIYGMEHGGKTVAVRL" gene 1697953..1699767 /locus_tag="TCM_042669" /note="dbxref CacaoGD:Thecc1EG042669" mRNA join(1697953..1698984,1699560..1699767) /locus_tag="TCM_042669" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage" CDS 1698143..1698385 /locus_tag="TCM_042669" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17991.1" /translation="MSQACMYQPGQDISSMHTREKEHDFPGKKKKKNEFSSALVSSLL PNPHIADTISNPLNSPRLRTNQAFKIPLGKNIFLAY" mobile_element complement(1698767..1699376) /note="source:CACAO_on_E732_scaffold_9 3363 3932" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 1700226..1703537 /locus_tag="TCM_042670" /note="dbxref CacaoGD:Thecc1EG042670" mRNA join(1700226..1700761,1701324..1701883,1702016..>1702037) /locus_tag="TCM_042670" /product="Type one serine/threonine protein phosphatase 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g000357.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026199t1" /inference="similar to AA sequence:frave:gene20860" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc248t8; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3971t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc19152t4" mRNA join(1700502..1700761,1701324..1701883,1701958..1702188, 1703116..1703537) /locus_tag="TCM_042670" /product="Type one serine/threonine protein phosphatase 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g000357.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026199t1" /inference="similar to AA sequence:frave:gene20860" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3971t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3971t1" CDS join(1700545..1700761,1701324..1701883,1701958..1702143) /locus_tag="TCM_042670" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene20860; paralog of Thecc1EG026199t1" /codon_start=1 /product="Type one serine/threonine protein phosphatase 4 isoform 1" /protein_id="EOY17992.1" /db_xref="TAIR:AT2G39840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48462" /translation="MAAATTAQGQTAMMDPTVLDDIIRRLTEVRSARPGKQVQLSETE IKQLCVASRDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPNANYLFLGD YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWK SFTDCFNCLPVAALIDDKILCMHGGLSPDLTNLDQIRNLSRPTAVPDTGLLCDLLWSD PGRDVKGWGMNDRGVSFTFGADKVSEFLTKHDLDLVCRAHQVVEDGYEFFADRQLVTI FSAPNYCGEFDNAGAMMSVDENLMCSFQILKPAEKKAKFMSTKM" CDS join(1700545..1700761,1701324..1701883,1702016..>1702036) /locus_tag="TCM_042670" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene20860; paralog of Thecc1EG026199t1" /codon_start=1 /product="Type one serine/threonine protein phosphatase 4 isoform 2" /protein_id="EOY17993.1" /db_xref="TAIR:AT2G39840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48462" /translation="MAAATTAQGQTAMMDPTVLDDIIRRLTEVRSARPGKQVQLSETE IKQLCVASRDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPNANYLFLGD YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWK SFTDCFNCLPVAALIDDKILCMHGGLSPDLTNLDQIRNLSRPTAVPDTGLLCDLLWSD PGRDVKGWGMNDRGVSFTFGADKVSEFLTKHDLDLVCRAHQHLTIVVN" gene 1702709..1709956 /locus_tag="TCM_042671" /note="dbxref CacaoGD:Thecc1EG042671" mRNA join(1702709..1702957,1703116..1703627,1704605..1704768, 1705108..1705220,1706026..1706286,1706376..1706480, 1706555..1706620,1706793..1707014,1707340..1707909, 1708428..1709039,1709293..1709469,1709551..1709914) /locus_tag="TCM_042671" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06100.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06100.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1440t1" CDS join(1703557..1703627,1704605..1704768,1705108..1705220, 1706026..1706286,1706376..1706480,1706555..1706620, 1706793..1707014,1707340..1707909,1708428..1709039, 1709293..1709469,1709551..1709658) /locus_tag="TCM_042671" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY17994.1" /db_xref="Phytozome:POPTR_0008s06100.1" /db_xref="TAIR:AT5G05970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNT4" /translation="MCCEDLPSGNALKCSIVHFQTLMRILMNLPDPSMELLAASGGDT VKIFDIKLEPNDPCVSSYSPSPSCLVNSVKWNHTNLVVASAGEDKKISLWRKNGQSMG TVPVAGTDSGDNIEESILAISFSNKGSRYICSGGSAQVVRIWDLQRKRCIKWLRGHTS TITGVMYNCKDEHLASISLNGDLILHNLASGARAAELKDPNEQVLRVLDYSRISRHVL VTAGDDGSIHLWDTTGRSPKVSWLKQHSAPTAGICFSPSNDKIIASVGLDKKLYTYDS GSRRPSAFISHEAPFSSLAFRDDGWTLAAGTSNGRVLFFDIRGKLQPFTVLRAYSSSE AVSSLCWQRSKPATVNESTCTAETALLGGAVEDSVLMPDPLPSMTLSSLSLSTAISGS RITGRSGPAEILSLTGSSGSVLNTLNLSSSEETPHRSHLWPGGALTRLHAPRSTYNFK DDMEVFSPLVDVQPITPSLDKLWDDHEGAKKEHLLTDKKPSSLLFPSSRRFAFADDGA SDHPIFDWKSSSMSRQDDTRSFTAVGSTPASSSKSEEASITPPEAWGGEKISDKFTHL RQLPSRFGMQASGCLTSGSIYSGQDQSSTLGQTSISSLTSSNLSYENLSTKDVSSNQE TSLGFPEHFSSSSMSSLSLGSKGISGAGNLDSPKLASLGLPRRFSTYAERISTTSAFS DGTSHLVASPKTKKTGAETREELLNSLLSRSDSLAAVESGILPAMNGGILQPHKAPQA DPHQGSNFTLQLFQRTLEETLDSFQKSIHGDMRNLHIEILRQFHMQEMEMSRVMSSIL ENQAELMKEVQSLRKENQQLRQLL" mRNA join(1704383..1704456,1704605..1704768,1705108..1705220, 1706026..1706286,1706376..1706480,1706555..1706620, 1706793..1707014,1707340..1707909,1708428..1709039, 1709293..1709469,1709551..1709956) /locus_tag="TCM_042671" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06100.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06100.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1440t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1440t1; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8144t10" CDS join(1704612..1704768,1705108..1705220,1706026..1706286, 1706376..1706480,1706555..1706620,1706793..1707014, 1707340..1707909,1708428..1709039,1709293..1709469, 1709551..1709658) /locus_tag="TCM_042671" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY17995.1" /db_xref="Phytozome:POPTR_0008s06100.1" /db_xref="TAIR:AT5G05970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNT4" /translation="MNLPDPSMELLAASGGDTVKIFDIKLEPNDPCVSSYSPSPSCLV NSVKWNHTNLVVASAGEDKKISLWRKNGQSMGTVPVAGTDSGDNIEESILAISFSNKG SRYICSGGSAQVVRIWDLQRKRCIKWLRGHTSTITGVMYNCKDEHLASISLNGDLILH NLASGARAAELKDPNEQVLRVLDYSRISRHVLVTAGDDGSIHLWDTTGRSPKVSWLKQ HSAPTAGICFSPSNDKIIASVGLDKKLYTYDSGSRRPSAFISHEAPFSSLAFRDDGWT LAAGTSNGRVLFFDIRGKLQPFTVLRAYSSSEAVSSLCWQRSKPATVNESTCTAETAL LGGAVEDSVLMPDPLPSMTLSSLSLSTAISGSRITGRSGPAEILSLTGSSGSVLNTLN LSSSEETPHRSHLWPGGALTRLHAPRSTYNFKDDMEVFSPLVDVQPITPSLDKLWDDH EGAKKEHLLTDKKPSSLLFPSSRRFAFADDGASDHPIFDWKSSSMSRQDDTRSFTAVG STPASSSKSEEASITPPEAWGGEKISDKFTHLRQLPSRFGMQASGCLTSGSIYSGQDQ SSTLGQTSISSLTSSNLSYENLSTKDVSSNQETSLGFPEHFSSSSMSSLSLGSKGISG AGNLDSPKLASLGLPRRFSTYAERISTTSAFSDGTSHLVASPKTKKTGAETREELLNS LLSRSDSLAAVESGILPAMNGGILQPHKAPQADPHQGSNFTLQLFQRTLEETLDSFQK SIHGDMRNLHIEILRQFHMQEMEMSRVMSSILENQAELMKEVQSLRKENQQLRQLL" gene complement(1710203..1711252) /locus_tag="TCM_042672" /note="dbxref CacaoGD:Thecc1EG042672" mRNA complement(join(1710203..1710506,1710595..1710967, 1711197..1711252)) /locus_tag="TCM_042672" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042677t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1444t1" CDS complement(1710642..1710938) /locus_tag="TCM_042672" /note="paralog of Thecc1EG042677t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17996.1" /translation="MVCSANEFLQLDCLDIWYLKELEEWQIEEGAMPRLQSLSLVWVS NLRSLPEGLRYITALQEMKLYKMKRSLVERIQVIDGREGEDFSNVRHIPSIQID" gene 1714914..1717527 /locus_tag="TCM_042673" /note="dbxref CacaoGD:Thecc1EG042673" mRNA join(1714914..1717215,1717306..1717527) /locus_tag="TCM_042673" /product="Disease resistance protein RPP8, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024097001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042682t1" /inference="similar to AA sequence:ricco:30143.m001203" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1456t1" CDS 1715482..1717146 /locus_tag="TCM_042673" /note="dbxref ricco:30143.m001203; paralog of Thecc1EG042682t1" /codon_start=1 /product="Disease resistance protein RPP8, putative" /protein_id="EOY17997.1" /db_xref="TAIR:AT5G35450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR21" /translation="MLGRMMVKKCGGLPLAIAVLGGLLATKGTMVEWEMVQRNINAHL NNFPQLNDYGNVNGILVLSYNELPFHLKPCFLYIGHYPEDWEISKKELIRLWIAEGFI SPSWESRERMLMEEVAERFLEELIDRCLVQVGQRDHTGTGVKTCRIHDLLRDLCVRKV QNENFLEIIQPSWMENDGHVNLTLSMARRIAIHPSKRYVSLKENHPNLRSLLFFQEEL IELNISKCNDFKFLRVLKLVRNDVYKWRVPSEIGNLLHLRYLKLRSSISGGVILPRSI DKLKNLHTLDIFSLKSSIPHVLLKWRRLRHIVVDDLSIKDVDLLGRDILKNIETLKNI WSKSLIQNNAVLDLTNIRTLVIIFKSSKDVELIVKALIESQRLRSLYMRLEYSVSSPD LEPLSCYHHLSQLSFKGEIQEDPHPSHHVLKFLPANIVKLTLEDSRMKQDPMAVLGKL RHLRTLRLWPSSYKGYKMVCSVNDFLQLDFLQIWYLPELEEWHIEEGTMPRLRSLTLY KVPNLRIFPEGLRYLTTLQEINIEGMKRSLAEAENFFTGATNPPSD" gene 1719524..1720126 /locus_tag="TCM_042674" /note="dbxref CacaoGD:Thecc1EG042674" mRNA 1719524..1720126 /locus_tag="TCM_042674" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042681t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc20383t1" CDS 1719589..1720023 /locus_tag="TCM_042674" /note="paralog of Thecc1EG042681t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY17998.1" /translation="MAEAIVSLAIERISDLLIHVAVFLHGVREEVEDLKAELQRMKSS LIDADRKQDQDELTCTLVSQIRILLMKPKMLLTTSFFKSHMKEAFMDSSRDSPSLFVC TKSGSRSKQSRLSLKAFLRIFRLIIGYPERRGLALFSRCSSG" mobile_element 1721853..1721892 /note="source:INTACT897F_F376_scaffold_6-int 1217 1256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1721858..1721929 /note="source:CACAO_PIF_E220_scaffold_7 1664 1736" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 1721898..1722568 /note="source:INTACT897F_F376_scaffold_6-int 1188 1854" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1724761..1726514 /locus_tag="TCM_042676" /note="dbxref CacaoGD:Thecc1EG042676" mRNA join(1724761..1725038,1725545..1725636,1725891..1726067, 1726150..1726514) /locus_tag="TCM_042676" /product="Transducin/WD40 repeat-like superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042671t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s06100.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8137t9" CDS join(1724906..1725038,1725545..1725636,1725891..1726067, 1726150..1726257) /locus_tag="TCM_042676" /note="paralog of Thecc1EG042671t2" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative" /protein_id="EOY17999.1" /db_xref="Phytozome:POPTR_0008s06100.1" /db_xref="TAIR:AT5G05970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNT4" /translation="MSKALSKESSNEAASPIQPLDTASSHDTTNLTGQCLLAEISKHD GAENREELLSSLLSSSDSLAAVESGILLAMHGGTLQPHKAPQPDPRQGSNFTPQLCQR TLEETLDSFQKSIHGDMRNLHIEILRQFHMQEMEMSRVMSSILENQAELMKEVQSLRK ENQQIRQLL" gene complement(1726590..1738487) /locus_tag="TCM_042677" /note="dbxref CacaoGD:Thecc1EG042677" mRNA complement(join(1726590..1728454,1728638..1730228, 1731861..1735059,1738292..1738487)) /locus_tag="TCM_042677" /product="Disease resistance protein RPP8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024097001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042682t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032828001" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(join(1727515..1728454,1728638..1730228, 1731861..1734609)) /locus_tag="TCM_042677" /note="paralog of Thecc1EG042682t1" /codon_start=1 /product="Disease resistance protein RPP8" /protein_id="EOY18000.1" /db_xref="Phytozome:GSVIVT01032828001" /db_xref="TAIR:AT5G48620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AG94" /translation="MADAIVSLAIERISDLLIHEAVFLRGVREEVEGLKAELERMKSS LEDADSRQEQTKLNRTLVRQIRDLAYKAEDVIDDFVLQVAHEGGFDGIMKRFTKPFHL HKIGKKVKAIQTELESISKKLPAYNQISGGEGSRSISEMQQRLRRTYTHVEEEDVVSL EDTTKEVLAQLMTEEDRLHVVVSIVGMGGIGKTTVAKKVYKHDDVKRHFECCAWAFIS QQCMPREVLHDLLLKLLSPSKEERELIDKLKEHELVKRLYDVLKEKRYLVVLDDIWRS EDWDNFKPAFPRGRKGSKILFTTRHKELALHADPCSSPIEVQFLTDDESWKLFKMKAF PGKKTEFHACPEELEMLGREMVKKCGGLPLAIAVLGGLLATKKSPAQWEMVHSDINAH LNKFQQEDHRYGGVNGILALSYNELPFHLKPCFLYLGHYPEDWEISKRELIRLWIAEG FISPSWKSGEMLMEDVAEQFLEQLINRCLVQVGKRDHTGTRVKTCHVHDLLRDLCVEK AQEEKFLKVFQPSLNESDGNSLHVTLTVSMARRIAIHPSKRYVSLKGKHPNLRTLLVF QNEELIRLHISIPNNFKFLRVLNIARNDMPFNWYVSSEIGNLHHLRYLKLRSAATIIL PRSIGKLKNLHTLYLLNDVPRIPDVLFKLRRLRHIVVGDLYNYVPLLLRGALKNIETL KYIESKTLIENNAVLDLTNIRSLGIRFQRIKDVKPILKALIKSQRLGSLNMRLEDSIT YPDLEPLSHCHHLSKLFLRGKLREDPHLSHHILKFLPTNIVKLTLWDCEMKQDPMAVL GKLSHLRTLLLAGFSYRGTKMVCTANEFLQLDFLDIWNLFELEEWQIEEGAMPRLRGL SLAWVSNLRSLPEGLRYITALQEMKLYEMKRSLVERIQVIDGREGEDFSNVRHIPSIQ IDYLLIHEAFFFDDVRQEVESLKAELERMKSFLKDVDRKQGQDDRLRTRVREIRDLAY DAEDVIDSYILKVANLGGFHRIIKRFSTLHTHKIGKQVKAIQTKLGDISKTLPAYGIS GEGEGSNFSVEMQRRLRRSYPHVEEDDVVSLEVSTRDVMDQLMKKEDRLRVVSLVGMG GIGKTTLAKRVYNHNDVKRHFDCCAWVFISQQCMPREVFHGVLIKVLSPSREEREVID RLKEHELVEMLYDILKEKQYLVILDDIWRCEDWDSLKPAFPKGNEGSKLLFTTRNKEV ALLADPHSPPIELPLLTDDASWNLFKRKAFLENKMESHVCSKEFEMLGKEMLKRCGGL PLAIVVLGGLLATKKSWNEWEMVQKNINAYLNKVQQQDYGGVNGILALSYNELSFYLK PCFLYLGHYPEDSEISKKELIRLWIAEGFISPSPEGGEMLEDVAEEYLEELTNRCLVQ VGRRDHTGVGVKTCRVHDLLRDLCMSKAREENFFGIVQPPMSGNKNHYLRLTVAALSK ARRIVVHPSKRYLGFQSDEVVLPRSIGKLKNLHTLFILAKFPVKIPNVLSKLGRLRHL ILIRWYGLKRFHKIKGFCQVNTLENIETMKYIRVEDLTKNNALLKLTNIRSLGIQFTR SEDVEAILRSTSFGLDSLRSLHMELVRSTPFPELEQLSQCHHLSKLLLRGRIPEDPES SHHVLKFLPTNICKLTLCYSHINEDPMPVLEKLPHLRILCLESLSYTGTAMSCSANGF PQLDSLDIYRSNLAEWQIEEGAMPCLRSLNLTDVAGLKMVPEGLRYITTLQQMKLEGM NRSLIERIQVMDGRKGEDFYKVQHVLSIQIIRS" mobile_element complement(1736062..1737286) /note="source:CACAO_PIF_E62_scaffold_2 7095 8317" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 1740218..1740382 /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2025" /mobile_element_type="transposon:TIR/Mutator" gene complement(1744126..1749779) /locus_tag="TCM_042679" /note="dbxref CacaoGD:Thecc1EG042679" mRNA complement(join(1744126..1744341,1745872..1749779)) /locus_tag="TCM_042679" /product="Disease resistance protein RPP8" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400015702" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042677t1" /inference="similar to AA sequence:ricco:30143.m001203" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1488t1" CDS complement(1746453..1749221) /locus_tag="TCM_042679" /note="dbxref ricco:30143.m001203; paralog of Thecc1EG042677t1" /codon_start=1 /product="Disease resistance protein RPP8" /protein_id="EOY18001.1" /db_xref="TAIR:AT5G48620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR21" /translation="MEQAIVSLAIERISDLLIHEAVFLLGVREEVEDLKAELERMKSS LKDADNKKQDQNELTRTLVRQIRDLAYEAEDVIDNFILRFAHQGGFHGIIKRFTKPFH LYKIGVKVKAIQTKLDGLSKGLPTYNQISSGEGSSSVAKMQQQLRRTYIHVEEEDLVS LERITNEVLAQLMTEEDRLHVVVSIVGMGGIGKTTLAKIVYKHIDVKRRFDCCAWAFI SQQCMLRQVLQGLLIKLLSPSKEERELIDKLEENELMEKVYDFLKEKRYLVVFDDIWR KEHWNSLKHAFPRGKEGSKILFTTRNKEVALHADPCNSPIELQCLTDDESWKLFRMKA FPGKKTELHACAKELEMLGREMVEKCGGLPLAIATLGGLLATKRSRAQWETVHQNINA HLNEFQQQDHHYGGVNWILVLSYNELPFHLKPCFLYLSNYPEDWEISKKELIRLWIAE GFISPSWESGGMLMEDVAEQFLEELINRCLVQVGKRDHTGIGVKTCHVHDLLRDLCVL KAREENFLEIIRPSLIENDGNTLHVTLTPSMARRIAIHPSKRYVSLKGKHPNLRSLLL FQNEKLIELHISKCNDFKFLRVLNLARNDMPSKWHLSSEIGNLHHLRYLRLRSTGTII LPRSINKLKNLHTLYLLNEVPRIPDVLFKLRRLRHIVVGDIYDYVPLLLRDTLKNIET LKYIKGKSLIEKNAVLDLSNIRSLGISFERSKDVEPIIKALIESQRLRSLYMWLEDSI PYPDMEPLSHCHHLSKLFLRGKLQEDPHSSHHLLKFLPANIIKLSLIGCKIKQDPMAV LGKLPHLRTLRLFAYSYSGIKMVCSANDFLQLDFLRIWNLPELEEWQIEDGAMRHLRI LILGWVSNLKIFPEGLRYITALQEMKLERMKRSLVERIQVIEGREGEDFFKVCHIPSI RIMHTEKD" mobile_element complement(1750052..1750124) /note="source:scaffold_3_CACTA_0377 4815 4885" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1750113..1750172 /note="source:scaffold_9_CACTA_0942 5133 5192" /mobile_element_type="transposon:TIR/CACTA" gene complement(1751422..1755779) /locus_tag="TCM_042680" /note="dbxref CacaoGD:Thecc1EG042680" mRNA complement(join(1751422..1751646,1752243..1755779)) /locus_tag="TCM_042680" /product="Disease resistance protein RPP8" /inference="alignment:exonerate- protein:2:frave:gene03060.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042679t1" /inference="similar to AA sequence:ricco:30143.m001203" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS complement(1752835..1755597) /locus_tag="TCM_042680" /note="dbxref ricco:30143.m001203; paralog of Thecc1EG042679t1" /codon_start=1 /product="Disease resistance protein RPP8" /protein_id="EOY18002.1" /db_xref="TAIR:AT5G35450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR21" /translation="MEEAIVSLAIERISDLLIQEAVFLLGVRDEVEGLKAELERMKSS LKDADKKPDQNELTRTLVRQISDLAYEAEDVIDSFILQVAHRGGFHGIIKRFTKPFHL HKIGVKVKAIQTKLEGLSKALPAYNQISGGEGSSSIFEMQQRLRRTYTHVEEEDVVSL QGITNEVLAQLMTEEDRPHVVVSIVGMGGIGKTTLAKKVYKHIDVRQSFDCFAWAFIS RQCMPREVLHDLLIKLLTPSKEERKLIDKLQENELMEKVYNLLKEKRFLVVFDDIWRN EHWNILKPAFPRGKRGSKILFTTRHKEVALHADPCNFPIELPLLTDDESWKLFRMKAF PGNRTEFHTCLEELEMLGREMVKKCGGLPLAIATLGGLLATKRSRAQWEMVHKNINAH LNKFQQQDHHYGGVNGILALSYNELPFHLKPCFLYLGHYPEDWEISKKELIQLWIAEG FISPSWESRGMLMEDVAEQYLEELIDRCLVQVGKRDHTGTGVKTCHIHDLLKDLCVLK AQEENFFEIIQPSLIDNDSTSLYVTLTASMARRVAIHPSKRYISLKGKHPNLRALLLF QNEELIKFHISKCNDFKFLRVLNLLRNDVSEWHVPSEIGNLHHLRYLKLESSEIILPR SIGKLKSLHTLYLPNANVRIPNILFKLRRLRHIVLGAVFTRHVPLLLRDSLRNIETLK YIRVMTLIENNAVLDLTNIRSLGITFERSKDVEPFLRALIESHRLSSLFIDFEDSTTC SNLEPLSQCNHLSKLYLSGEIQEDPHLSHHVLNFLPANIVKLTLLFSKMNQDPMVVLG KLPNLRILKLLSNSYEGSKMVCSANDFLQLEFLDIWLLSELEEWQIGEGAMPRLQSLN LLALHNLRMFPEGLRYITALQEMKLKYFRRPLVERIQVIDGREGEDFSKVRYIPSIQI SDTLED" mobile_element 1756628..1756825 /note="source:INTACT257_F186_scaffold_6-int 19239 19455" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1756756..1760509) /locus_tag="TCM_042681" /note="dbxref CacaoGD:Thecc1EG042681" mRNA complement(join(1756756..1758595,1758707..1759385, 1759767..1760509)) /locus_tag="TCM_042681" /product="Disease resistance protein RPP8" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400051319" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042682t1" /inference="similar to AA sequence:ricco:30143.m001186" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00421t00004" CDS complement(join(1757587..1758595,1758707..1759385, 1759767..1760337)) /locus_tag="TCM_042681" /note="dbxref ricco:30143.m001186; paralog of Thecc1EG042682t1" /codon_start=1 /product="Disease resistance protein RPP8" /protein_id="EOY18003.1" /translation="MAEAIVSLAIERISDLLIHEAVFLHGVREEVEGLKAELQRMKSS LIDADRKQDQDELTCTLVSQIRDLAYEAEDVIDDFILQVAHQGGFRGFIKRFTKPSRL HKIGVEVKAIQTKLESISKNLLAYNRISGAEGSRSVFEMQQGLRRTYSHVEEEDVVSL EGITRHVLKQLMTEEDRLHVVVSIVGMGGIDDESWKLFRMKAFPVNKTESHVCPEALE MPGREMVKKCGGLPLAIAVLGGLLATKKTRAEWEMVQRNINARLNNFPLQDDYGKVNG ILSLSYTELPFHLKPCFLYLGHYPEDWEISKRELIRLWIAEGFISPSWESGEMLMEDV AEQFLEQLINRCLVQVGKRDHTGVGVKTCHVHDLLRDLCVKKAQEENFLEIIQPPLNE SDGNSLHVTLTASMARRIAIHPSKRVLNLVKNDVWPEWNVSSEIGNLHHLRYLRLRFG GTIILPRSIGKLKNLHTLYLINEVPRIPDVLFKLRCLRHIVVGNLLIYVPLLLRDTLK NIETLKYIGSKNLIENNAVLDLTNIRSLGISFERSKDVEPILKALIKSQRLVSLYLWL KDSIPYPNLEPLSHCHHLSKLFLRGKIQEDPHSSHHSMRFLPANIVKLTLWDCEMKQD PMAVLGKLPHLRTLFFESFSYVGTKMVCSANEFLQLDYLGIGPLKELEEWQIEKGAMP RLRSLELLKFSNLRSFPEGLKYITALQEMILLEMKRSLVERIQVIDGSEGEDFSNVRH IPSIQVMGTEED" gene complement(1760662..1769925) /locus_tag="TCM_042682" /note="dbxref CacaoGD:Thecc1EG042682" mRNA complement(join(1760662..1760903,1766200..1766769, 1766856..1769925)) /locus_tag="TCM_042682" /product="Disease resistance protein RPP8" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400051319.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042677t1" /inference="similar to AA sequence:ricco:30143.m001203" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc373t69" CDS complement(1766903..1769668) /locus_tag="TCM_042682" /note="dbxref ricco:30143.m001203; paralog of Thecc1EG042677t1" /codon_start=1 /product="Disease resistance protein RPP8" /protein_id="EOY18004.1" /db_xref="TAIR:AT5G35450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR21" /translation="MAEAFVSLAIERISDLLIHEAVFLLGVREEVEGLKAELERMKSS LEDADSRQDQNKLNRTLVRQIRDLAYEAEDVIDDSILHAAHQRGFHGIIKKFTEPSHL HKIGVKVKGIQTKLESISKSLPAYNRISGTEGSSSVFEMQQRFRRTYTHVEQEDVVSL EDTTKEVLAQLMTEEDRLHVVVSIVGMGGIGKTTLAKKVYKHDDVKRHFDCCAWAFIS QQCMPREVLHDLLLKLLSPSKEERKLIDKLKEHELVKRLYDVLKEKRYLVVLDDIWRS EDWDNFKPAFPRGRKGSKILFTTRHKDLALHADPCNSPVEVRFLTEDESWKLFKMKAF PGKKTEFHACPEELEMLGREMVKKCGGLPLAIAVLGGLLATKKSPAQWEMVHSDINAH LNKFQQEDHRYGGVNGILALSYNELPFHLKPCFLYLGHYPEDWEISKKELIRLWIAEG FISPSWKSGEMLMEDVAEQFLEQLINRCLVQVGKRDHRGTGVKTCHVHDLLRDLCVKK AQEENFLEIIQPPSNKSDGNSLHVTLTASMARRIAIHPSKRYVSLKGKYPNLRTLLLF QNEELIKLHISKCNDFKFLRVLNLVRNDMLSKWHVSSEIGNLYHLRYLRLRSAGTIIL PRSIGKLKNLHTLYLRYQVSRIPDVLFKLRRLRHIVVGDIYVYVPLLLRDTLKNIETL KYIKSKSLIENNAVLDLTNFGSLGISFERSKDVELILKALIQSQRLESLYMWLEDSIP YPDLEPLSRCHHLSKLLLRGKIREDPHLSHHSLKILPANIAKLTLWECEMKQDPMAAL GKLPHLRTLRLWTSSYKGTKLVCSANEFLQLDCLVIVALQELEKWQIEKGAMPCLRSL SLSVVPNLRSFPEGLRYITALQEMKLSSLKRSLVERIQVIDGREGEDFSNVRHIPSIQ IDFTLED" gene complement(1770006..1783828) /locus_tag="TCM_042683" /note="dbxref CacaoGD:Thecc1EG042683" mRNA complement(join(1770006..1770175,1770242..1770672, 1771459..1771619,1773116..1773197,1773286..1774353, 1774465..1776124,1777069..1777099,1777842..1778002, 1778324..1778476,1779080..1779158,1779663..1779956, 1780052..1780213,1780362..1780439,1780553..1780599, 1781219..1781279,1781408..1781464,1781586..1781669, 1782197..1782257,1782454..1782563,1783296..1783361, 1783446..1783579,1783667..1783828)) /locus_tag="TCM_042683" /product="Disease resistance protein RPP8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06090.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042680t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06090.2" /note="quality class is strong, express is medium, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1566t4" CDS complement(join(1773324..1774353,1774465..1776124, 1777069..1777099,1777842..1778002,1778324..1778476, 1779080..1779158,1779663..1779956,1780052..1780213, 1780362..1780439,1780553..1780599,1781219..1781279, 1781408..1781464,1781586..1781669,1782197..1782257, 1782454..1782563,1783296..1783361,1783446..1783579, 1783667..1783676)) /locus_tag="TCM_042683" /note="paralog of Thecc1EG042680t1" /codon_start=1 /product="Disease resistance protein RPP8" /protein_id="EOY18005.1" /db_xref="Phytozome:POPTR_0008s06090.2" /db_xref="TAIR:AT5G05980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT54" /translation="MAQGGSMESAAARYESTLDALSSLITKRSRADKSNKGDRFDLLF DYLKILELEEAISEMKIIHVAGTKGKGSTCTFAESILRNCGFRTGLFTSPHLIDVRER FRLDGVEICEEKFLEYFWWCYDRLKEKTNEDVPMPTYFRFLALLAFKIFAAEQVDVAI LEVGLGGKFDATNVVQTPIVCGISSLGYDHMEILGNTLGEIAGEKAGIFKQGIPAFTV AQPDEAMHVLEEKASKLNVQLQVAHPLDASLLNGLKLSLKGEHQYLNAGLAVALCSTW LQRTGHPITNSNQTGSLPEQFIKGLTTASLQGRAQIVCDQFTDIESPGDLVFYLDGAH SPESMEACGRWFSLCIKEGNQQANLNYQTQDYTESSSEVAQQQTDERYKKDTAQILLF NCMSVRDPQLLLPHLMRACASHGVCFKKALFVPNISVYHKVGSHTLPTTDPQVDLSWQ FTLQRVWENLMLGDKGGEAINTDQACEEVKDDTGMSVRSCNNSSVFSSLPLAIKWLRD AAQKDQFVRFQVLVTGSLHLVEAIVSLAIERISDLLIHEAVYLHGVREEVQRLKAELE RMKAELERMKSCLKVADNKQDQNELTCTLVRQIRDLAYEAEDVIDTFILHVAHQGGFH GIIKRFTKPFHLHKIGVKVKAIQTKLEDISKSLPAYDQISGREGSNSISEMQQRLRRT YSHVEEEDVVSLEGITNEVLAQLMTEEDRLHVVVSIVGMGGIGKTTLAKKVYNHIDVK GHFDCFAWTFISRQCMPRDVLHDLLIKVLCPSTQERELIDKLKENELIKRLYDVLKEK HYLIVLDDIWRNEDWNSLKSAFPRGKRGSKILFTTRNRDVPLLADPCNSPIELPVLTD NGSWKLFRMKAFRGNKIESHACPEELEMLGREMVKKCGGLPLAIAALGGLLATKKSRA QWEMVHRNINAHINKFQQQDHHYGAVNEILALSYNELPFHLKPCFLYLGHYPEDWEIS KKELIRLWIAEGFISPSWENEGMLMEDVAEQFLEELINRCLVQVGKRDYTGIGVKTCH IHDLLRDLCIRKAQEENFLGIIQPPINENNGNSLHVTLTASMARRIAIHPNKRVLNLM KRDMMKWHVSNEIGNLHHLRYLGLECSGRIILPQSIGKLKSLHTLYLRNQALTRIPNV LFQLKRLRHIIVQNYNGWEGVHKFLLPSDASKSIETLKYIRVETLIENSAALILTNVK NLGIIFERSKDVEPILKALVESHRLCSLRMSLQDSIPFPDLEPLSRCHHLSKLSLRGM IQEDPHSSLHVLKFLPANITKLTLSSCMMNQDPMAVLGKLPHLRTLRLWYKSYTGSKM VCSANEFLQLDFLYIGGLKELEEWQIEEGAMPHLQRLRMHDVENLRTFPEGLRYIFAL QELELILMRQSLVERIQVIDGREGKDFSKVRHIPSIQIIDTLDDRKL" gene complement(1783550..1786258) /locus_tag="TCM_042684" /note="dbxref CacaoGD:Thecc1EG042684" mRNA complement(join(1783550..1783579,1784035..1785336)) /locus_tag="TCM_042684" /product="Exostosin family protein, putative isoform 1" /inference="similar to AA sequence:frave:gene20856" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc19t1; alternateUTRof:Thecc1EG042684t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc20t14" mRNA complement(join(1783941..1785336,1786030..1786258)) /locus_tag="TCM_042684" /product="Exostosin family protein, putative isoform 1" /inference="similar to AA sequence:frave:gene20856" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc20t14" CDS complement(1784110..1785159) /locus_tag="TCM_042684" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene20856" /codon_start=1 /product="Exostosin family protein, putative isoform 1" /protein_id="EOY18006.1" /db_xref="TAIR:AT4G38040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMM5" /translation="MSSLPLLLCFFFFTSFVPLFTALTSSPYLSPTILPQNYQKMLKN FKIYVYPPPETLSFDSKVEALFYSSLLHSPFTTQNPEEAHLFFLPFSFHSDLSPRSAA RVVGDYRTEFIYWNRTLGADHFFLSCSGVGHGSDRNVVELKKNSVQVSCFPTTPGLFI PHKDASLPPLANVHAPTHAPGSKSTSHLAYVRYNWVKESNLVEQLLADPEILVESEPS DQMTYEERLAGSKFCLFEYGPEISGIGEAMSFGCVPVVITDRPVQDMPLMDLLTWRHI AVFVGTSGGAREIKRVLGRVVVEGYEDMSGSAVVASKHFVWNETPQPYDAFHMVMYQL WLRRHTIRYAEREWA" CDS complement(1784110..1785159) /locus_tag="TCM_042684" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene20856" /codon_start=1 /product="Exostosin family protein, putative isoform 1" /protein_id="EOY18007.1" /db_xref="TAIR:AT4G38040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMM5" /translation="MSSLPLLLCFFFFTSFVPLFTALTSSPYLSPTILPQNYQKMLKN FKIYVYPPPETLSFDSKVEALFYSSLLHSPFTTQNPEEAHLFFLPFSFHSDLSPRSAA RVVGDYRTEFIYWNRTLGADHFFLSCSGVGHGSDRNVVELKKNSVQVSCFPTTPGLFI PHKDASLPPLANVHAPTHAPGSKSTSHLAYVRYNWVKESNLVEQLLADPEILVESEPS DQMTYEERLAGSKFCLFEYGPEISGIGEAMSFGCVPVVITDRPVQDMPLMDLLTWRHI AVFVGTSGGAREIKRVLGRVVVEGYEDMSGSAVVASKHFVWNETPQPYDAFHMVMYQL WLRRHTIRYAEREWA" mobile_element complement(1786218..1786605) /note="source:CACAO_PIF_E119_scaffold_3 4230 4656" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1787549..1788685) /note="source:CACAO_on_E168_scaffold_10 1 1137" /mobile_element_type="transposon:TIR/hAT" gene 1790202..1793722 /locus_tag="TCM_042686" /note="dbxref CacaoGD:Thecc1EG042686" mRNA join(1790202..1790362,1790487..1790523,1790599..1790688, 1791544..1791709,1792881..1793154,1793249..1793422, 1793530..1793722) /locus_tag="TCM_042686" /product="Integral membrane Yip1 family protein" /inference="alignment:exonerate- protein:2:ricco:30143.m001196" /inference="similar to AA sequence:ricco:30143.m001196" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8321t3" CDS join(1790306..1790362,1790487..1790523,1790599..1790688, 1791544..1791709,1792881..1793154,1793249..1793422, 1793530..1793598) /locus_tag="TCM_042686" /note="dbxref ricco:30143.m001196" /codon_start=1 /product="Integral membrane Yip1 family protein" /protein_id="EOY18008.1" /db_xref="TAIR:AT2G39805.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLM4" /translation="MDESSYSNLATSHLLGSVPAVVSEENKASYEVPEANMQIFPPNN GGGGGSGRGYQTLEAPTEGFEQQSPNNWKGVFSISSYTQYFNVDTDVVINRLMSSFYP ASGDFFSKIDANPDLYGLIWITTTLVFMLSSFGNCATYLMQKHTDSTASWNFDVGYVN VAACGIYGYAIVVPMAFYFLLQYLGSNASLIRFWCMWGYSLSIFILTAFLLLIPVEIL RWIIILIAGTVSACFVALNLKSYIVGNDLTMMVVAAFLLQMALAIFIKEISQSKIPLE EKLLCVSGLLTW" mobile_element complement(1794379..1794721) /note="source:CACAO_on_SS_E42_scaffold_2 24171 24537" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1794738..1794832 /note="source:CACAO_hAT_E2982_scaffold_7 936 1032" /mobile_element_type="transposon:TIR/hAT" gene 1796223..1803757 /locus_tag="TCM_042687" /note="dbxref CacaoGD:Thecc1EG042687" mRNA join(1796223..1796569,1797384..1797665,1797856..1797958, 1798124..1798285,1798757..1799034,1799461..1799611, 1799759..1799923,1800120..1800197,1800429..1800518, 1800790..1800876,1800974..1801060,1801158..1801254, 1801380..1801483,1801640..1801715,1801865..1802015, 1802149..1802217,1802451..1802517,1802605..1802675, 1802980..1803757) /locus_tag="TCM_042687" /product="Pyrroline-5-carboxylate synthetase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021858t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016467001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b041216t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1140t5" mRNA join(1796223..1796569,1797384..1797455,1797562..1797665, 1797856..1797958,1798124..1798285,1798757..1799034, 1799461..1799611,1799759..1799923,1800120..1800197, 1800429..1800518,1800790..1800876,1800974..1801060, 1801158..1801254,1801380..1801483,1801640..1801715, 1801865..1802015,1802149..1802217,1802451..1802517, 1802605..1802675,1802980..1803757) /locus_tag="TCM_042687" /product="Pyrroline-5-carboxylate synthetase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021858t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016467001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1140t5" mRNA join(1796456..1796569,1797384..1797455,1797562..1797665, 1797856..1797958,1798124..1798285,1798757..1799034, 1799461..1799611,1799759..1799923,1800120..1800197, 1800429..1800518,1800790..1800876,1800974..1801060, 1801158..1801254,1801380..1801483,1801639..1801715, 1801865..1802015,1802149..1802217,1802448..1802517, 1802605..1802675,1802980..1803494) /locus_tag="TCM_042687" /product="Pyrroline-5-carboxylate synthetase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20590.1" /inference="alignment:exonerate- protein:2:ricco:30170.m013685.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021858t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016467001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1140t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1140t5; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9782t3" mRNA join(1796456..1796569,1797384..1797455,1797562..1797665, 1797856..1797958,1798124..1798285,1798757..1799034, 1799461..1799611,1799759..1799923,1800120..1800197, 1800429..1800518,1800790..1800876,1800974..1801060, 1801158..1801254,1801380..1801483,1801640..1801715, 1801865..1802015,1802149..1802217,1802980..1803481) /locus_tag="TCM_042687" /product="Pyrroline-5-carboxylate synthetase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20590.1" /inference="alignment:exonerate- protein:2:ricco:30170.m013685.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021858t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016467001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc582t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1140t5; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9782t3" mRNA join(1796456..1796569,1797384..1797455,1797562..1797665, 1797856..1797958,1798124..1798285,1798757..1799034, 1799461..1799611,1799759..1799923,1800120..1800197, 1800429..1800518,1800790..1800876,1800974..1801060, 1801158..1801254,1801380..1801483,1801640..1801715, 1801865..1802217,1802451..1802517,1802605..1802632) /locus_tag="TCM_042687" /product="Pyrroline-5-carboxylate synthetase isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20590.1" /inference="alignment:exonerate- protein:2:ricco:30170.m013685.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021858t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016467001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc582t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1140t5; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9782t3" CDS join(1796510..1796569,1797384..1797455,1797562..1797665, 1797856..1797958,1798124..1798285,1798757..1799034, 1799461..1799611,1799759..1799923,1800120..1800197, 1800429..1800518,1800790..1800876,1800974..1801060, 1801158..1801254,1801380..1801483,1801640..1801715, 1801865..1802015,1802149..1802217,1802451..1802517, 1802605..1802675,1802980..1803061) /locus_tag="TCM_042687" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021858t1" /codon_start=1 /product="Pyrroline-5-carboxylate synthetase isoform 1" /protein_id="EOY18009.1" /db_xref="Phytozome:GSVIVT01016467001" /db_xref="TAIR:AT3G55610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B1A2U9" /translation="MGDMDPSRGFVKDVKRLVIKVGTAVVTRTDGRLALGRLGALCEQ IKELNSQGYEVILVSSGAVGLGRQRLRYRRLVNSSFADLQKPQVELDGKACAAVGQNS LMALYDTLFSELDVSSAQLLVTDSDFRDGDFRKQLSETVKSLLSLRVIPIFNENDAVS TRKAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVEGLYSGPPSDPKSKLIHTYV KEKHQGEITFGDKSRVGRGGMTAKVKAAVNAANAGIPVVITSGYAAENILKVLQGKRI GTLFHQNAHLWEPIKEVGAHEMAVAARESSRRLQALSSQERKKILLDIADALEANEKV ITIENEADVAAAQQAGYEKSLISRLALKPGKISSLAKSIRVLANMEDAIGRVLKKTQL ADGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHK VITEAIPDTVGGKVIGLVTTREEIPNLLKLDDVIDLVIPRGSNKLVSQIKSSTKIPVL GHADGICHVYVDKSADMDMAKKIVLDAKIDYPAACNAMETLLVHKDLVQTGALNDLIN DLHIEGVILYGGPRASNLLSIPQARSFHHEYNSMACTVEIVDDVGAAIDHIHHHGSAH TDCIITEDQEIAEIFLHQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVG VEGLLTTRWILKGSGQVVDGDKGVTYVHKDVPVDS" CDS join(1796510..1796569,1797384..1797455,1797562..1797665, 1797856..1797958,1798124..1798285,1798757..1799034, 1799461..1799611,1799759..1799923,1800120..1800197, 1800429..1800518,1800790..1800876,1800974..1801060, 1801158..1801254,1801380..1801483,1801640..1801715, 1801865..1802015,1802149..1802217,1802980..1803061) /locus_tag="TCM_042687" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021858t1" /codon_start=1 /product="Pyrroline-5-carboxylate synthetase isoform 4" /protein_id="EOY18012.1" /db_xref="Phytozome:GSVIVT01016467001" /db_xref="TAIR:AT3G55610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B1A2U9" /translation="MGDMDPSRGFVKDVKRLVIKVGTAVVTRTDGRLALGRLGALCEQ IKELNSQGYEVILVSSGAVGLGRQRLRYRRLVNSSFADLQKPQVELDGKACAAVGQNS LMALYDTLFSELDVSSAQLLVTDSDFRDGDFRKQLSETVKSLLSLRVIPIFNENDAVS TRKAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVEGLYSGPPSDPKSKLIHTYV KEKHQGEITFGDKSRVGRGGMTAKVKAAVNAANAGIPVVITSGYAAENILKVLQGKRI GTLFHQNAHLWEPIKEVGAHEMAVAARESSRRLQALSSQERKKILLDIADALEANEKV ITIENEADVAAAQQAGYEKSLISRLALKPGKISSLAKSIRVLANMEDAIGRVLKKTQL ADGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHK VITEAIPDTVGGKVIGLVTTREEIPNLLKLDDVIDLVIPRGSNKLVSQIKSSTKIPVL GHADGICHVYVDKSADMDMAKKIVLDAKIDYPAACNAMETLLVHKDLVQTGALNDLIN DLHIEGVILYGGPRASNLLSIPQARSFHHEYNSMACTVEIVDDVGAAIDHIHHHGSAH TDCIITEDQEIAEIFLHQVDRILKGSGQVVDGDKGVTYVHKDVPVDS" CDS join(1796510..1796569,1797384..1797455,1797562..1797665, 1797856..1797958,1798124..1798285,1798757..1799034, 1799461..1799611,1799759..1799923,1800120..1800197, 1800429..1800518,1800790..1800876,1800974..1801060, 1801158..1801254,1801380..1801483,1801640..1801715, 1801865..1802214) /locus_tag="TCM_042687" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG021858t1" /codon_start=1 /product="Pyrroline-5-carboxylate synthetase isoform 5" /protein_id="EOY18013.1" /db_xref="Phytozome:GSVIVT01016467001" /db_xref="TAIR:AT3G55610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B1A2U9" /translation="MGDMDPSRGFVKDVKRLVIKVGTAVVTRTDGRLALGRLGALCEQ IKELNSQGYEVILVSSGAVGLGRQRLRYRRLVNSSFADLQKPQVELDGKACAAVGQNS LMALYDTLFSELDVSSAQLLVTDSDFRDGDFRKQLSETVKSLLSLRVIPIFNENDAVS TRKAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVEGLYSGPPSDPKSKLIHTYV KEKHQGEITFGDKSRVGRGGMTAKVKAAVNAANAGIPVVITSGYAAENILKVLQGKRI GTLFHQNAHLWEPIKEVGAHEMAVAARESSRRLQALSSQERKKILLDIADALEANEKV ITIENEADVAAAQQAGYEKSLISRLALKPGKISSLAKSIRVLANMEDAIGRVLKKTQL ADGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHK VITEAIPDTVGGKVIGLVTTREEIPNLLKLDDVIDLVIPRGSNKLVSQIKSSTKIPVL GHADGICHVYVDKSADMDMAKKIVLDAKIDYPAACNAMETLLVHKDLVQTGALNDLIN DLHIEGVILYGGPRASNLLSIPQARSFHHEYNSMACTVEIVDDVGAAIDHIHHHGRHV THFWQRSLLMSLCVHYFVWIYAYVCTLHVWMDTDYLFFIFLQCTHRLYHHRGPGNCRN LPASS" CDS join(1796510..1796569,1797384..1797455,1797562..1797665, 1797856..1797958,1798124..1798285,1798757..1799034, 1799461..1799611,1799759..1799923,1800120..1800197, 1800429..1800518,1800790..1800876,1800974..1801060, 1801158..1801254,1801380..1801483,1801639..1801686) /locus_tag="TCM_042687" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021858t1" /codon_start=1 /product="Pyrroline-5-carboxylate synthetase isoform 2" /protein_id="EOY18010.1" /db_xref="Phytozome:GSVIVT01016467001" /db_xref="TAIR:AT3G55610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B1A2U9" /translation="MGDMDPSRGFVKDVKRLVIKVGTAVVTRTDGRLALGRLGALCEQ IKELNSQGYEVILVSSGAVGLGRQRLRYRRLVNSSFADLQKPQVELDGKACAAVGQNS LMALYDTLFSELDVSSAQLLVTDSDFRDGDFRKQLSETVKSLLSLRVIPIFNENDAVS TRKAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVEGLYSGPPSDPKSKLIHTYV KEKHQGEITFGDKSRVGRGGMTAKVKAAVNAANAGIPVVITSGYAAENILKVLQGKRI GTLFHQNAHLWEPIKEVGAHEMAVAARESSRRLQALSSQERKKILLDIADALEANEKV ITIENEADVAAAQQAGYEKSLISRLALKPGKISSLAKSIRVLANMEDAIGRVLKKTQL ADGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHK VITEAIPDTVGGKVIGLVTTREEIPNLLKLDDVIDLVIPRGSNKLVSQIKSSTKIPVL GHADGICHVYVDKSADMDMAKKIVLDAKIDYPAACNAMGNSSCTQGFSADWCT" CDS join(1797929..1797958,1798124..1798285,1798757..1799034, 1799461..1799611,1799759..1799923,1800120..1800197, 1800429..1800518,1800790..1800876,1800974..1801060, 1801158..1801254,1801380..1801483,1801640..1801715, 1801865..1802015,1802149..1802217,1802451..1802517, 1802605..1802675,1802980..1803061) /locus_tag="TCM_042687" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021858t1" /codon_start=1 /product="Pyrroline-5-carboxylate synthetase isoform 3" /protein_id="EOY18011.1" /db_xref="Phytozome:GSVIVT01016467001" /db_xref="TAIR:AT3G55610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B1A2U9" /translation="MALYDTLFSELDVSSAQLLVTDSDFRDGDFRKQLSETVKSLLSL RVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVEGLYSGP PSDPKSKLIHTYVKEKHQGEITFGDKSRVGRGGMTAKVKAAVNAANAGIPVVITSGYA AENILKVLQGKRIGTLFHQNAHLWEPIKEVGAHEMAVAARESSRRLQALSSQERKKIL LDIADALEANEKVITIENEADVAAAQQAGYEKSLISRLALKPGKISSLAKSIRVLANM EDAIGRVLKKTQLADGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKG GKEAKRSNAILHKVITEAIPDTVGGKVIGLVTTREEIPNLLKLDDVIDLVIPRGSNKL VSQIKSSTKIPVLGHADGICHVYVDKSADMDMAKKIVLDAKIDYPAACNAMETLLVHK DLVQTGALNDLINDLHIEGVILYGGPRASNLLSIPQARSFHHEYNSMACTVEIVDDVG AAIDHIHHHGSAHTDCIITEDQEIAEIFLHQVDSAAVFHNASTRFCDGARFGLGAEVG ISTSRIHARGPVGVEGLLTTRWILKGSGQVVDGDKGVTYVHKDVPVDS" gene complement(1803797..1805578) /locus_tag="TCM_042688" /note="dbxref CacaoGD:Thecc1EG042688" mRNA complement(join(1803797..1804458,1804564..1804907, 1805156..1805578)) /locus_tag="TCM_042688" /product="Mitochondrial glycoprotein family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016468001" /inference="similar to AA sequence:Phytozome:GSVIVT01016468001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11980t00001" CDS complement(join(1804299..1804458,1804564..1804907, 1805156..1805428)) /locus_tag="TCM_042688" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mitochondrial glycoprotein family protein, putative isoform 1" /protein_id="EOY18014.1" /db_xref="Phytozome:GSVIVT01016468001" /db_xref="TAIR:AT3G55605.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT61" /translation="MALASIVRKSANSLAPLAIRLTRVQRNYHSCVFTALNHSFQSQK SGVNRFCPNILHFSTAVDSKKTSSDESLLRVLESEIQCAEESDEHDQVEGTPSGFPFK IEDTPGLQTVTLTREYDGEVIKVEVHMPDLVTGDEQEEDEDNDEGDYEKPSKSSIPLA VTVSKKGGPSLEFNCTAFPDEVAIDSLTVRNPDSEDVLAYEGPDFHDLDENLQKAFHK YLEIRGIKPSTTNFLHEYMINKDGREYLRWLKNLKKFIEE" mRNA complement(join(<1804309..1804458,1804564..1804900, 1805152..1805567)) /locus_tag="TCM_042688" /product="Mitochondrial glycoprotein family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016468001" /inference="similar to AA sequence:Phytozome:GSVIVT01016468001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is weak, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc252t14; inference alignment:Newbler:10:TSA:cgbaL_g11980t00001" CDS complement(join(<1804311..1804458,1804564..1804900, 1805152..1805428)) /locus_tag="TCM_042688" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mitochondrial glycoprotein family protein, putative isoform 2" /protein_id="EOY18015.1" /db_xref="Phytozome:GSVIVT01016468001" /db_xref="TAIR:AT2G39795.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT61" /translation="MALASIVRKSANSLAPLAIRLTRVQRNYHSCVFTALNHSFQSQK SGVNRFCPNILHFSTAVDSKKTSSDESLLRVLESEIQCAEESDEHDQVRTPSGFPFKI EDTPGLQTVTLTREYDGEVIKVEVHMPDLVTGDEQEEDEDNDEGDYEKPSKSSIPLAV TVSKKGGPSLEFNCTAFPDEVAIDSLTVRNPDSEDVLAYEGPDFHDLDENLQKAFHKY LEIRGIKPSTTNFLHEYMINKDGREYLRWLKNLKKF" gene 1805936..1810550 /locus_tag="TCM_042689" /note="dbxref CacaoGD:Thecc1EG042689" mRNA join(1805936..1806366,1806653..1806696,1807312..1807392, 1807582..1807689,1807816..1807907,1808089..1808163, 1808239..1808308,1808702..1808803,1809087..1809195, 1809500..1809562,1809994..1810329) /locus_tag="TCM_042689" /product="Metallo-beta-lactamase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s17700.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s17700.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03704t00001" mRNA join(1805953..1806366,1806653..1806696,1807312..1807392, 1807582..1807907,1808089..1808163,1808239..1808308, 1808702..1808803,1809087..1809195,1809500..1809562, 1809994..1810550) /locus_tag="TCM_042689" /product="Metallo-beta-lactamase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s17700.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s17700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8157t5_C2; inference alignment:Newbler:10:TSA:cgbaL_g03704t00001" CDS join(1806144..1806366,1806653..1806696,1807312..1807392, 1807582..1807907,1808089..1808163,1808239..1808308, 1808702..1808803,1809087..1809195,1809500..1809562, 1809994..1810118) /locus_tag="TCM_042689" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Metallo-beta-lactamase family protein isoform 2" /protein_id="EOY18017.1" /db_xref="Phytozome:POPTR_0010s17700.1" /db_xref="TAIR:AT4G33540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWE1" /translation="MAMANKAINLASVGSVFPSSVDKLKKSSSSTSVHKKLRVSRFPS VKAVQSPVESGTGRWARQRRPQNVDGDFFVDHTCIDCDTCRWMAPQVFKRVDGMSAVF KQPTCKEDRLNALQALLSCPTSSIRTEVPPSDILEAQKTFPIPIDEKKLPVIFIIPNY FILQHHLTDCSVIMCTWNSKPTLSLWLCDIIYFQGVYHCGYHSEKSYGAASYLIIHPE GNILVDSPKFTERLAQKIEMLGGVRYMFLTHKDDVADHGKWSKRLSCDRILHSQDVEV CTTDVEIKLEGTGPWSLGEDIMLIHTPGHTEGSVCLLYKSVKVLFTGDHLLMRESGLD IMEIYNKCSVPAQLNSVEKLLELEFNWIIPGHGRRIEFKDVQEKNTILEAFVQEKYTQ HSSSMNVIRSLHV" CDS join(1806144..1806366,1806653..1806696,1807312..1807392, 1807582..1807689,1807816..1807907,1808089..1808163, 1808239..1808308,1808702..1808803,1809087..1809195, 1809500..1809562,1809994..1810118) /locus_tag="TCM_042689" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Metallo-beta-lactamase family protein isoform 1" /protein_id="EOY18016.1" /db_xref="Phytozome:POPTR_0010s17700.1" /db_xref="TAIR:AT4G33540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWE1" /translation="MAMANKAINLASVGSVFPSSVDKLKKSSSSTSVHKKLRVSRFPS VKAVQSPVESGTGRWARQRRPQNVDGDFFVDHTCIDCDTCRWMAPQVFKRVDGMSAVF KQPTCKEDRLNALQALLSCPTSSIRTEVPPSDILEAQKTFPIPIDEKKLPGVYHCGYH SEKSYGAASYLIIHPEGNILVDSPKFTERLAQKIEMLGGVRYMFLTHKDDVADHGKWS KRLSCDRILHSQDVEVCTTDVEIKLEGTGPWSLGEDIMLIHTPGHTEGSVCLLYKSVK VLFTGDHLLMRESGLDIMEIYNKCSVPAQLNSVEKLLELEFNWIIPGHGRRIEFKDVQ EKNTILEAFVQEKYTQHSSSMNVIRSLHV" gene 1811027..1813408 /locus_tag="TCM_042690" /note="dbxref CacaoGD:Thecc1EG042690" mRNA join(1811027..1811289,1812498..1812630,1812983..1813408) /locus_tag="TCM_042690" /product="CASP-like protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021864t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034106001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07943t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc570t10" mRNA join(1811028..1811289,1811858..1811922,1812135..1812213, 1812498..1812630,1812983..1813397) /locus_tag="TCM_042690" /product="CASP-like protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021864t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034106001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc570t10" CDS join(1811162..1811289,1811858..1811922,1812135..1812213, 1812498..1812630,1812983..1813180) /locus_tag="TCM_042690" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021864t1" /codon_start=1 /product="CASP-like protein, putative isoform 1" /protein_id="EOY18018.1" /db_xref="Phytozome:GSVIVT01034106001" /db_xref="TAIR:AT3G53850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q945M8" /translation="MALFGSPGKLSGLLLRVGQCSFAAASIGVMVSAPGFFNSTAFWK PSEDNVTCSSKNKKWGDIAKMAPNRQSIIKSDEEPIVPSLAYFYIISYLIASMGLQVL WSFGLACLDLHALRSKRNLQNPILVSLFVVGDWVTAILSLAAACSSAGVTVLYSRDLG YCRSPHIPCSRFQASIFLAFISWFLLAISSHVTFWLLAAV" CDS join(1811162..1811289,1812498..1812630,1812983..1813180) /locus_tag="TCM_042690" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021864t1" /codon_start=1 /product="CASP-like protein isoform 2" /protein_id="EOY18019.1" /db_xref="Phytozome:GSVIVT01034106001" /db_xref="TAIR:AT3G53850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q945M8" /translation="MALFGSPGKLSGLLLRVGQCSFAAASIGVMVSAPGFFNSTAFCY LIASMGLQVLWSFGLACLDLHALRSKRNLQNPILVSLFVVGDWVTAILSLAAACSSAG VTVLYSRDLGYCRSPHIPCSRFQASIFLAFISWFLLAISSHVTFWLLAAV" mobile_element 1813726..1813800 /note="source:CACAO_Mariner_E265_scaffold_10 3852 3918" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(1815390..1816888) /locus_tag="TCM_042691" /note="dbxref CacaoGD:Thecc1EG042691" mRNA complement(join(1815390..1816123,1816353..1816888)) /locus_tag="TCM_042691" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015760t1" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03210t00002" CDS complement(join(1816027..1816123,1816353..1816501)) /locus_tag="TCM_042691" /note="paralog of Thecc1EG015760t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18020.1" /translation="MDLDFLAFDSCCSARNICFPVWPIFGNMRSFLKAFRSENPDTFI HDLVKRYGRPGIYKTYLFGSPSITISIPETCRKALER" mobile_element complement(1817112..1817195) /note="source:CACAO_M_E65313_F266_scaffold_9 149 228" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1819735..1823302) /locus_tag="TCM_042692" /note="dbxref CacaoGD:Thecc1EG042692" mRNA complement(join(1819735..1820861,1820951..1821190, 1821298..1821360,1821500..1821632,1822866..1823302)) /locus_tag="TCM_042692" /product="Glucose-1-phosphate adenylyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:frave:gene20851.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021865t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400026514" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b041221t1a3; alternateUTRof:Thecc1EG042692t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc351t1" mRNA complement(join(1819735..1820861,1820951..1821190, 1821298..1821360,1821500..1821632,1821739..1821862)) /locus_tag="TCM_042692" /product="Glucose-1-phosphate adenylyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:frave:gene20851.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021865t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400026514" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b041221t1a2; alternateUTRof:Thecc1EG042692t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc351t1" mRNA complement(join(1819868..1820861,1820951..1821190, 1821298..1821363,1821500..1821632,1822866..1823007)) /locus_tag="TCM_042692" /product="Glucose-1-phosphate adenylyltransferase family protein isoform 5" /inference="alignment:exonerate- protein:2:frave:gene20851.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021865t3" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400026514" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1234t3; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc351t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17018t3" mRNA complement(join(1819868..1820861,1820951..1821190, 1821295..1821360,1821500..1821632,1822853..1823007)) /locus_tag="TCM_042692" /product="Glucose-1-phosphate adenylyltransferase family protein isoform 3" /inference="alignment:exonerate- protein:2:frave:gene20851.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021865t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400026514" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1234t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc351t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17018t3" mRNA complement(join(1820100..1820861,1820951..1821190, 1821298..1821360,1821500..1821632,1822853..1823302)) /locus_tag="TCM_042692" /product="Glucose-1-phosphate adenylyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:frave:gene20851.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021865t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400026514" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc351t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc351t1" CDS complement(join(1820190..1820861,1820951..1821190, 1821298..1821360,1821500..1821610)) /locus_tag="TCM_042692" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021865t2" /codon_start=1 /product="Glucose-1-phosphate adenylyltransferase family protein isoform 1" /protein_id="EOY18021.1" /db_xref="Phytozome:PGSC0003DMP400026514" /db_xref="TAIR:AT2G39770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D8M1B1" /translation="MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV GVIEVVLAINYQPEVMLNFLKEFEAKVGIKISCSQETEPLGTAGPLALARDKLIDGSG KPFFVLNSDVISEYPFKEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGQVDKF VEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWM DIGQPRDYITGLRLYLDSLRKKASTKLATGPHIVGNVLVHESAKIGEGCLIGPDVAIG PGCVVESGVRLSRCTVMRGVRVKKHACISSSIIGWHSTIGQWARVENMTILGEDVHVC DEIYSNGGVVLPHKEIKSSILKPEIVM" CDS complement(join(1820190..1820861,1820951..1821190, 1821298..1821360,1821500..1821610)) /locus_tag="TCM_042692" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021865t2" /codon_start=1 /product="Glucose-1-phosphate adenylyltransferase family protein isoform 1" /protein_id="EOY18022.1" /db_xref="Phytozome:PGSC0003DMP400026514" /db_xref="TAIR:AT2G39770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D8M1B1" /translation="MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV GVIEVVLAINYQPEVMLNFLKEFEAKVGIKISCSQETEPLGTAGPLALARDKLIDGSG KPFFVLNSDVISEYPFKEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGQVDKF VEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWM DIGQPRDYITGLRLYLDSLRKKASTKLATGPHIVGNVLVHESAKIGEGCLIGPDVAIG PGCVVESGVRLSRCTVMRGVRVKKHACISSSIIGWHSTIGQWARVENMTILGEDVHVC DEIYSNGGVVLPHKEIKSSILKPEIVM" CDS complement(join(1820190..1820861,1820951..1821190, 1821298..1821360,1821500..1821610)) /locus_tag="TCM_042692" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021865t2" /codon_start=1 /product="Glucose-1-phosphate adenylyltransferase family protein isoform 1" /protein_id="EOY18024.1" /db_xref="Phytozome:PGSC0003DMP400026514" /db_xref="TAIR:AT2G39770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D8M1B1" /translation="MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV GVIEVVLAINYQPEVMLNFLKEFEAKVGIKISCSQETEPLGTAGPLALARDKLIDGSG KPFFVLNSDVISEYPFKEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGQVDKF VEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWM DIGQPRDYITGLRLYLDSLRKKASTKLATGPHIVGNVLVHESAKIGEGCLIGPDVAIG PGCVVESGVRLSRCTVMRGVRVKKHACISSSIIGWHSTIGQWARVENMTILGEDVHVC DEIYSNGGVVLPHKEIKSSILKPEIVM" CDS complement(join(1820190..1820861,1820951..1821190, 1821295..1821360,1821500..1821610)) /locus_tag="TCM_042692" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021865t2" /codon_start=1 /product="Glucose-1-phosphate adenylyltransferase family protein isoform 3" /protein_id="EOY18023.1" /db_xref="Phytozome:PGSC0003DMP400026514" /db_xref="TAIR:AT2G39770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D8M1B1" /translation="MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV GVIEVVLAINYQPEVVMLNFLKEFEAKVGIKISCSQETEPLGTAGPLALARDKLIDGS GKPFFVLNSDVISEYPFKEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGQVDK FVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFW MDIGQPRDYITGLRLYLDSLRKKASTKLATGPHIVGNVLVHESAKIGEGCLIGPDVAI GPGCVVESGVRLSRCTVMRGVRVKKHACISSSIIGWHSTIGQWARVENMTILGEDVHV CDEIYSNGGVVLPHKEIKSSILKPEIVM" CDS complement(join(1820190..1820861,1820951..1821190, 1821298..1821363,1821500..1821610)) /locus_tag="TCM_042692" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG021865t3" /codon_start=1 /product="Glucose-1-phosphate adenylyltransferase family protein isoform 5" /protein_id="EOY18025.1" /db_xref="Phytozome:PGSC0003DMP400026514" /db_xref="TAIR:AT2G39770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D8M1B1" /translation="MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQQIEALKA VGVIEVVLAINYQPEVMLNFLKEFEAKVGIKISCSQETEPLGTAGPLALARDKLIDGS GKPFFVLNSDVISEYPFKEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGQVDK FVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFW MDIGQPRDYITGLRLYLDSLRKKASTKLATGPHIVGNVLVHESAKIGEGCLIGPDVAI GPGCVVESGVRLSRCTVMRGVRVKKHACISSSIIGWHSTIGQWARVENMTILGEDVHV CDEIYSNGGVVLPHKEIKSSILKPEIVM" gene complement(1821609..1822849) /locus_tag="TCM_042694" /note="dbxref CacaoGD:Thecc1EG042694" mRNA complement(join(1821609..1821632,1822034..1822849)) /locus_tag="TCM_042694" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9571t10" CDS complement(1822318..1822470) /locus_tag="TCM_042694" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18026.1" /translation="MPFSFCYVCCQILCKGQEFPRCQIKTDSAEYVFLAKFSFRLLGI FQFNCF" mobile_element complement(1825464..1825528) /note="source:CACAO_M_S_E101721_F266_scaffold_9 1453 1507" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1827753..1830085 /locus_tag="TCM_042695" /note="dbxref CacaoGD:Thecc1EG042695" mRNA join(1827753..1828207,1829247..1830085) /locus_tag="TCM_042695" /product="Eukaryotic translation initiation factor 3G1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s06040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041757t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20650.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10960t00001" CDS join(1827853..1828207,1829247..1829785) /locus_tag="TCM_042695" /note="paralog of Thecc1EG041757t1" /codon_start=1 /product="Eukaryotic translation initiation factor 3G1" /protein_id="EOY18027.1" /db_xref="Phytozome:POPTR_0010s20650.1" /db_xref="TAIR:AT3G11400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J6A1" /translation="MAIDQTDPNPNQSKPSKLRWGELEEDDDLDFLLPPKEVIGPDEN GIKKVIEYKFNEEGNKVKITTTTRVRKLAKARLNKRALERRNWEKFGDAVREDVGSRL TMVSTEEILLERPRAPGTKPEEIKVAGDSLAQLSKGGAVLMVCRTCGKKGDHWTSKCP YKDLAAPVETFVDKPAASETSMAASGAGKGAYVPPSMRAGAERTGGSDMRRRNDENSV RVTNLSEDTREPDLMELFRTFGPVTRVYVAMDQKTGTSRGFGFVNFVNREDAQRAINK LNGYGYDNLILRVEWATPRSN" gene 1830443..1832690 /locus_tag="TCM_042696" /note="dbxref CacaoGD:Thecc1EG042696" mRNA join(1830443..1831073,1831144..1831359,1832167..1832690) /locus_tag="TCM_042696" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.89 coverage" CDS join(1831024..1831073,1831144..1831359,1832167..1832173) /locus_tag="TCM_042696" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18028.1" /translation="MLITQGLVLGTVLMSHRPDHATDVLNRTNTKPSAPGGAALRRRL SHVSRGRTGGEDYFILYRLLGSRLGDVGFCGYLRLNKRVSERRNWK" gene 1833415..1834668 /locus_tag="TCM_042697" /note="dbxref CacaoGD:Thecc1EG042697" mRNA 1833415..1834668 /locus_tag="TCM_042697" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.49 coverage" CDS 1833531..1833818 /locus_tag="TCM_042697" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18029.1" /translation="MGFILCMSFDAWKPSASGEISFSFFQCGILRSISFFDFFFFRCR IMQEYEFFLKKKIGRPPPRPWLILITRGLILGKELMSHRSDPRRRLALILI" gene 1835900..1837055 /locus_tag="TCM_042698" /note="dbxref CacaoGD:Thecc1EG042698" mRNA join(1835900..1836384,1836736..1836927) /locus_tag="TCM_042698" /product="XH/XS domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g003565.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042747t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016528001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09620t00001" CDS 1836114..1836362 /locus_tag="TCM_042698" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042747t1" /codon_start=1 /product="XH/XS domain-containing protein isoform 1" /protein_id="EOY18030.1" /db_xref="Phytozome:GSVIVT01016528001" /db_xref="TAIR:AT4G01780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GV06" /translation="MLVQEVINDEDEKLRDLRNQMGNEVYKVVTSAIKEINEYNPSGR YIISELWNYGEGRKATLQEGVIYLLKLWNTAKRKRGTI" mRNA join(<1836129..1836364,1836736..1837055) /locus_tag="TCM_042698" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g003565.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042747t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016528001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9092t3; inference alignment:Newbler:10:TSA:cgbaP1_g09620t00001" CDS <1836129..1836362 /locus_tag="TCM_042698" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042747t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18031.1" /db_xref="Phytozome:GSVIVT01016528001" /translation="VINDEDEKLRDLRNQMGNEVYKVVTSAIKEINEYNPSGRYIISE LWNYGEGRKATLQEGVIYLLKLWNTAKRKRGTI" gene 1836904..1838298 /locus_tag="TCM_042699" /note="dbxref CacaoGD:Thecc1EG042699" mRNA 1836904..1838298 /locus_tag="TCM_042699" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.24 coverage" CDS 1837084..1837398 /locus_tag="TCM_042699" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18032.1" /translation="MTCSLIKTWSKGPTNASPSLNCEATNSISELLSFMGYMVMTTNH EFNSFGRGSKHRSPVTSTKAYSKDTYTSNLHALCHLLAPISPSTFSNQQHCSTPWTKL CG" gene 1841776..1842993 /locus_tag="TCM_042700" /note="dbxref CacaoGD:Thecc1EG042700" mRNA join(1841776..1841885,1842080..1842211,1842484..1842696, 1842817..1842993) /locus_tag="TCM_042700" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00183t00004" CDS join(1841861..1841885,1842080..1842211,1842484..1842488) /locus_tag="TCM_042700" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18033.1" /translation="MTRTNREMVLNSLIMPKYFAFPRYERAWLILNIRCVLLQTDAVA AIYKLPLFG" gene 1843673..1847577 /locus_tag="TCM_042701" /note="dbxref CacaoGD:Thecc1EG042701" mRNA join(1843673..1843794,1844493..1844782,1845522..1845649, 1845817..1846011,1846133..1846345,1846884..1847142, 1847232..1847577) /locus_tag="TCM_042701" /product="XH/XS domain-containing protein, putative" /inference="alignment:exonerate-protein:2:frave:gene14072" /inference="similar to AA sequence:Phytozome:GSVIVT01016527001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8268t2" CDS join(1844512..1844782,1845522..1845649,1845817..1846011, 1846133..1846345,1846884..1847120) /locus_tag="TCM_042701" /codon_start=1 /product="XH/XS domain-containing protein, putative" /protein_id="EOY18034.1" /db_xref="Phytozome:GSVIVT01016527001" /db_xref="TAIR:AT1G15910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNX0" /translation="MERHYFEEELKKERRLVRNLIHEIDYKNQQLSEIEHKYDETTAT LRGLVDGLIAKIDSKDSKLLDWELKYNTTVRRLMDENTKLRDEFVKELKKVKSENIKL KCKLGQRTKELEECKSQSDLERRTLINEMEVLKENLPCQNLVEVDKTSSAQVAALRKE LEEKSEALQDLESRYNCLTVKQILTNQELQDARKESINGLKDMLNSRTTLGVKRMGEI NQKAFEVACSLKFPNEDWQEISAKLCSSWEQNVQDPKWHPFKRIPFRGNLQEIVDEDD EKLKELRNEYGEAAFEAVTTALMEMNEYNASGRYAVPEIWNLKEGRRASMKEIIQYII KQLKTHKRKRKLT" gene complement(1849261..1852575) /locus_tag="TCM_042703" /note="dbxref CacaoGD:Thecc1EG042703" mRNA complement(join(1849261..1849790,1850127..1850445, 1850825..1850992,1852410..1852575)) /locus_tag="TCM_042703" /product="Expansin A4, ALPHA 1.6,EXPA4" /inference="alignment:exonerate- protein:2:TAIR:AT2G39700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041823t1" /inference="similar to AA sequence:ricco:28223.m000099" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg3986t2" CDS complement(join(1849481..1849790,1850127..1850445, 1850825..1850975)) /locus_tag="TCM_042703" /note="dbxref ricco:28223.m000099; paralog of Thecc1EG041823t1" /codon_start=1 /product="Expansin A4, ALPHA 1.6,EXPA4" /protein_id="EOY18035.1" /db_xref="TAIR:AT2G39700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2S9" /translation="MAIGSVVACLVALNLILVAVEARIPGVYSGAEWQTAHATFYGGS DASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPQWCHAGSP SIFVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPC RKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTGWMSLSRNWGQNWQSNAV LVGQSLSFRVTGSDRRTSTSWNIVPSNWQFGQTFTGKNFRV" mobile_element complement(1852661..1852724) /note="source:CACAO_M_E52636_F51_scaffold_7 1618 1679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1859432..1859485) /note="source:CACAO_PIF_E144_scaffold_10 6002 6056" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 1859439..1859493 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5690 5746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1862292..1862424 /note="source:CACAO_hAT_E962_scaffold_2 23 158" /mobile_element_type="transposon:TIR/hAT" gene 1863149..1868893 /locus_tag="TCM_042704" /note="dbxref CacaoGD:Thecc1EG042704" mRNA join(1863149..1863539,1864252..1864371,1864499..1865345, 1865469..1865672,1865761..1865823,1865906..1865985, 1866083..1866327,1866410..1867002,1867466..1867562) /locus_tag="TCM_042704" /product="Telomeric DNA binding protein 1, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041816t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20990.5" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc471t7_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc471t10_C1; inference alignment:Newbler:10:TSA:cgbaL_g00687t00001" mRNA join(1863287..1863539,1864252..1864371,1864499..1865345, 1865469..1865672,1865761..1865823,1865906..1865985, 1866083..1866327,1866449..1866766,1866939..1868893) /locus_tag="TCM_042704" /product="Telomeric DNA binding protein 1, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041816t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20990.5" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:PASA:2:TSA:puevd3b041230t1a2; inference alignment:Newbler:10:TSA:cgbaL_g00687t00001" mRNA join(1863339..1863539,1864252..1864371,1864499..1865345, 1865469..1865672,1865761..1865823,1865906..1865985, 1866083..1866327,1866449..1866766,1866939..1867002, 1867466..1867699,1867792..1868893) /locus_tag="TCM_042704" /product="Telomeric DNA binding protein 1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041816t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20990.5" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00687t00001; inference alignment:Newbler:10:TSA:cgbaL_g00687t00001" mRNA join(1863352..1863539,1864252..1864371,1864499..1865345, 1865469..1865672,1865761..1865823,1865906..1865985, 1866083..1866340,1866435..1866778,1866939..1867381, 1867466..1867699) /locus_tag="TCM_042704" /product="Telomeric DNA binding protein 1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041816t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20990.5" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8045t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc471t10_C1; inference alignment:Newbler:10:TSA:cgbaL_g00687t00001" mRNA join(1863352..1863539,1864252..1864371,1864499..1865345, 1865469..1865672,1865761..1865823,1865906..1865985, 1866083..1866352,1866449..1866764,1866928..1867493) /locus_tag="TCM_042704" /product="Telomeric DNA binding protein 1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041816t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20990.5" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8045t2; alternateUTRof:Thecc1EG042704t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc471t10_C1; inference alignment:Newbler:10:TSA:cgbaL_g00687t00001" mRNA join(1863352..1863539,1864252..1864371,1864499..1865345, 1865469..1865672,1865761..1865823,1865906..1865985, 1866083..1866340,1866435..1867493) /locus_tag="TCM_042704" /product="Telomeric DNA binding protein 1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041816t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20990.5" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8045t6; alternateUTRof:Thecc1EG042704t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc471t10_C1; inference alignment:Newbler:10:TSA:cgbaL_g00687t00001" mRNA join(1863352..1863539,1864252..1864371,1864499..1865345, 1865469..1865672,1865761..1865823,1865906..1865985, 1866083..1866327,1866457..1866778,1866939..1867002, 1867466..1867493) /locus_tag="TCM_042704" /product="Telomeric DNA binding protein 1, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20990.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20990.5" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8045t3; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc471t10_C1; inference alignment:Newbler:10:TSA:cgbaL_g00687t00001" CDS join(1864291..1864371,1864499..1865345,1865469..1865672, 1865761..1865823,1865906..1865985,1866083..1866327, 1866449..1866766,1866939..1867002,1867466..1867690) /locus_tag="TCM_042704" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041816t1" /codon_start=1 /product="Telomeric DNA binding protein 1, putative isoform 1" /protein_id="EOY18036.1" /db_xref="Phytozome:POPTR_0010s20990.5" /db_xref="TAIR:AT3G12560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNW9" /translation="MVFKKRLDYGFNAFNVPKIPRAPRSTRRRGQSKRTVDDSQICAF ELLASLAGKLLQESESSASSNASEGHDHVSIGKDVVKQEIQYDDKPLKTECFEQGSCE ASVVASVSTTENSDNLKEFTHAENDAILERTLIKTQPAFLEQIGGDSKSVICKGNVAY GNFPCNANVDGYSPDIGELCDGKSENGFKQEQDARGLETGALHIANTCPSKDPVELSM TFPPPINSDRDVKLPSRRDPVPNASFSRHRNDIKLGNRDDDENFSRFNKLSNRFKASR PPTRIGDRRIRKLLTSKYWKVAPKLNDFENSRAGIKPLYRKRKTCYNYDRCQYDTLYK RRKFSDRSSIVTSDGGNSSESVSNSPGKVMNGDKSSSAALSHGGCGVSSFLTGHQASH PPKDSHVKFSIKSFRIPELYVEVPETATVGSLKRTVMEAVTALLGGGIRVGVLLQGKK VRDDSRTLSQTGISCEDNLDAIGFTLEPGPAKAPPLVCSEEPPLLLSCDAAPQNLISS PATPAVDTGILDASPDPPSLTNSANHVDSNNEPVSSQTDMLTDQSLPQSRALVPVPAM NVEALAVVPVNQKSRKSELAHRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFEN AEHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLDRVLAAHAYWSQHQAKQQGKH HAGTLRLTDAQADRNGVAAAIPTVMM" CDS join(1864291..1864371,1864499..1865345,1865469..1865672, 1865761..1865823,1865906..1865985,1866083..1866327, 1866449..1866766,1866939..1867074) /locus_tag="TCM_042704" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041816t1" /codon_start=1 /product="Telomeric DNA binding protein 1, putative isoform 3" /protein_id="EOY18038.1" /db_xref="Phytozome:POPTR_0010s20990.5" /db_xref="TAIR:AT3G12560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNW9" /translation="MVFKKRLDYGFNAFNVPKIPRAPRSTRRRGQSKRTVDDSQICAF ELLASLAGKLLQESESSASSNASEGHDHVSIGKDVVKQEIQYDDKPLKTECFEQGSCE ASVVASVSTTENSDNLKEFTHAENDAILERTLIKTQPAFLEQIGGDSKSVICKGNVAY GNFPCNANVDGYSPDIGELCDGKSENGFKQEQDARGLETGALHIANTCPSKDPVELSM TFPPPINSDRDVKLPSRRDPVPNASFSRHRNDIKLGNRDDDENFSRFNKLSNRFKASR PPTRIGDRRIRKLLTSKYWKVAPKLNDFENSRAGIKPLYRKRKTCYNYDRCQYDTLYK RRKFSDRSSIVTSDGGNSSESVSNSPGKVMNGDKSSSAALSHGGCGVSSFLTGHQASH PPKDSHVKFSIKSFRIPELYVEVPETATVGSLKRTVMEAVTALLGGGIRVGVLLQGKK VRDDSRTLSQTGISCEDNLDAIGFTLEPGPAKAPPLVCSEEPPLLLSCDAAPQNLISS PATPAVDTGILDASPDPPSLTNSANHVDSNNEPVSSQTDMLTDQSLPQSRALVPVPAM NVEALAVVPVNQKSRKSELAHRRTRRPFSVSEVEALVQAVEELGTGRWRDVKLRAFEN AEHRTYVDLKVKYIFSYSCVMKGTWVMKGYHEG" CDS join(1864291..1864371,1864499..1865345,1865469..1865672, 1865761..1865823,1865906..1865985,1866083..1866327, 1866457..1866487) /locus_tag="TCM_042704" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Telomeric DNA binding protein 1, putative isoform 6" /protein_id="EOY18041.1" /db_xref="Phytozome:POPTR_0010s20990.5" /db_xref="TAIR:AT3G12560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNW9" /translation="MVFKKRLDYGFNAFNVPKIPRAPRSTRRRGQSKRTVDDSQICAF ELLASLAGKLLQESESSASSNASEGHDHVSIGKDVVKQEIQYDDKPLKTECFEQGSCE ASVVASVSTTENSDNLKEFTHAENDAILERTLIKTQPAFLEQIGGDSKSVICKGNVAY GNFPCNANVDGYSPDIGELCDGKSENGFKQEQDARGLETGALHIANTCPSKDPVELSM TFPPPINSDRDVKLPSRRDPVPNASFSRHRNDIKLGNRDDDENFSRFNKLSNRFKASR PPTRIGDRRIRKLLTSKYWKVAPKLNDFENSRAGIKPLYRKRKTCYNYDRCQYDTLYK RRKFSDRSSIVTSDGGNSSESVSNSPGKVMNGDKSSSAALSHGGCGVSSFLTGHQASH PPKDSHVKFSIKSFRIPELYVEVPETATVGSLKRTVMEAVTALLGGGIRVGVLLQGKK VRDDSRTLSQTGISCEDNLDAIGFTLEPGPAKAPPLVCSEEPPLLLSCDAAPQNLISH SSCRYRDS" CDS join(1864291..1864371,1864499..1865345,1865469..1865672, 1865761..1865823,1865906..1865985,1866083..1866327, 1866410..1866434) /locus_tag="TCM_042704" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG041816t1" /codon_start=1 /product="Telomeric DNA binding protein 1, putative isoform 5" /protein_id="EOY18040.1" /db_xref="Phytozome:POPTR_0010s20990.5" /db_xref="TAIR:AT3G12560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNW9" /translation="MVFKKRLDYGFNAFNVPKIPRAPRSTRRRGQSKRTVDDSQICAF ELLASLAGKLLQESESSASSNASEGHDHVSIGKDVVKQEIQYDDKPLKTECFEQGSCE ASVVASVSTTENSDNLKEFTHAENDAILERTLIKTQPAFLEQIGGDSKSVICKGNVAY GNFPCNANVDGYSPDIGELCDGKSENGFKQEQDARGLETGALHIANTCPSKDPVELSM TFPPPINSDRDVKLPSRRDPVPNASFSRHRNDIKLGNRDDDENFSRFNKLSNRFKASR PPTRIGDRRIRKLLTSKYWKVAPKLNDFENSRAGIKPLYRKRKTCYNYDRCQYDTLYK RRKFSDRSSIVTSDGGNSSESVSNSPGKVMNGDKSSSAALSHGGCGVSSFLTGHQASH PPKDSHVKFSIKSFRIPELYVEVPETATVGSLKRTVMEAVTALLGGGIRVGVLLQGKK VRDDSRTLSQTGISCEDNLDAIGFTLEPGPAKAPPLVCSEEPPLLLSCDAAPQNLISY LYLLIN" CDS join(1864291..1864371,1864499..1865345,1865469..1865672, 1865761..1865823,1865906..1865985,1866083..1866331) /locus_tag="TCM_042704" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041816t1" /codon_start=1 /product="Telomeric DNA binding protein 1, putative isoform 2" /protein_id="EOY18037.1" /db_xref="Phytozome:POPTR_0010s20990.5" /db_xref="TAIR:AT3G12560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNW9" /translation="MVFKKRLDYGFNAFNVPKIPRAPRSTRRRGQSKRTVDDSQICAF ELLASLAGKLLQESESSASSNASEGHDHVSIGKDVVKQEIQYDDKPLKTECFEQGSCE ASVVASVSTTENSDNLKEFTHAENDAILERTLIKTQPAFLEQIGGDSKSVICKGNVAY GNFPCNANVDGYSPDIGELCDGKSENGFKQEQDARGLETGALHIANTCPSKDPVELSM TFPPPINSDRDVKLPSRRDPVPNASFSRHRNDIKLGNRDDDENFSRFNKLSNRFKASR PPTRIGDRRIRKLLTSKYWKVAPKLNDFENSRAGIKPLYRKRKTCYNYDRCQYDTLYK RRKFSDRSSIVTSDGGNSSESVSNSPGKVMNGDKSSSAALSHGGCGVSSFLTGHQASH PPKDSHVKFSIKSFRIPELYVEVPETATVGSLKRTVMEAVTALLGGGIRVGVLLQGKK VRDDSRTLSQTGISCEDNLDAIGFTLEPGPAKAPPLVCSEEPPLLLSCDAAPQNLIR" CDS join(1864291..1864371,1864499..1865345,1865469..1865672, 1865761..1865823,1865906..1865985,1866083..1866331) /locus_tag="TCM_042704" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG041816t1" /codon_start=1 /product="Telomeric DNA binding protein 1, putative isoform 2" /protein_id="EOY18039.1" /db_xref="Phytozome:POPTR_0010s20990.5" /db_xref="TAIR:AT3G12560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNW9" /translation="MVFKKRLDYGFNAFNVPKIPRAPRSTRRRGQSKRTVDDSQICAF ELLASLAGKLLQESESSASSNASEGHDHVSIGKDVVKQEIQYDDKPLKTECFEQGSCE ASVVASVSTTENSDNLKEFTHAENDAILERTLIKTQPAFLEQIGGDSKSVICKGNVAY GNFPCNANVDGYSPDIGELCDGKSENGFKQEQDARGLETGALHIANTCPSKDPVELSM TFPPPINSDRDVKLPSRRDPVPNASFSRHRNDIKLGNRDDDENFSRFNKLSNRFKASR PPTRIGDRRIRKLLTSKYWKVAPKLNDFENSRAGIKPLYRKRKTCYNYDRCQYDTLYK RRKFSDRSSIVTSDGGNSSESVSNSPGKVMNGDKSSSAALSHGGCGVSSFLTGHQASH PPKDSHVKFSIKSFRIPELYVEVPETATVGSLKRTVMEAVTALLGGGIRVGVLLQGKK VRDDSRTLSQTGISCEDNLDAIGFTLEPGPAKAPPLVCSEEPPLLLSCDAAPQNLIR" CDS join(1864291..1864371,1864499..1865345,1865469..1865672, 1865761..1865823,1865906..1865985,1866083..1866331) /locus_tag="TCM_042704" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG041816t1" /codon_start=1 /product="Telomeric DNA binding protein 1, putative isoform 2" /protein_id="EOY18042.1" /db_xref="Phytozome:POPTR_0010s20990.5" /db_xref="TAIR:AT3G12560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNW9" /translation="MVFKKRLDYGFNAFNVPKIPRAPRSTRRRGQSKRTVDDSQICAF ELLASLAGKLLQESESSASSNASEGHDHVSIGKDVVKQEIQYDDKPLKTECFEQGSCE ASVVASVSTTENSDNLKEFTHAENDAILERTLIKTQPAFLEQIGGDSKSVICKGNVAY GNFPCNANVDGYSPDIGELCDGKSENGFKQEQDARGLETGALHIANTCPSKDPVELSM TFPPPINSDRDVKLPSRRDPVPNASFSRHRNDIKLGNRDDDENFSRFNKLSNRFKASR PPTRIGDRRIRKLLTSKYWKVAPKLNDFENSRAGIKPLYRKRKTCYNYDRCQYDTLYK RRKFSDRSSIVTSDGGNSSESVSNSPGKVMNGDKSSSAALSHGGCGVSSFLTGHQASH PPKDSHVKFSIKSFRIPELYVEVPETATVGSLKRTVMEAVTALLGGGIRVGVLLQGKK VRDDSRTLSQTGISCEDNLDAIGFTLEPGPAKAPPLVCSEEPPLLLSCDAAPQNLIR" mobile_element 1872113..1872158 /note="source:CACAO_Mutator_E1149_scaffold_5 4720 4765" /mobile_element_type="transposon:TIR/Mutator" gene 1873197..1877333 /locus_tag="TCM_042705" /note="dbxref CacaoGD:Thecc1EG042705" mRNA join(1873197..1873294,1873694..1875986,1876460..1877333) /locus_tag="TCM_042705" /product="GRAS family transcription factor isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021920t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s05750.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7890t4_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc599t1" mRNA join(1873197..1873294,1873694..1877168) /locus_tag="TCM_042705" /product="GRAS family transcription factor isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021920t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s05750.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc599t2; alternateUTRof:Thecc1EG042705t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc599t1" mRNA join(1873197..1873294,1873694..1876253,1876459..1877168) /locus_tag="TCM_042705" /product="GRAS family transcription factor isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021920t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s05750.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc599t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc599t1" CDS join(1873929..1875986,1876460..1876471) /locus_tag="TCM_042705" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021920t2" /codon_start=1 /product="GRAS family transcription factor isoform 2" /protein_id="EOY18044.1" /db_xref="Phytozome:POPTR_0008s05750.2" /db_xref="TAIR:AT1G07530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMJ2" /translation="MDRSLKGLYGSVDRFRLNDDTVLAFSGRNFDDGFQKETYVDIPP LQPAPMPRNLVPSSSVNEEGDSHEDYDFSDVVLKYINQMLMEEDMEDKTCMFKESSAA LQAAEKSFYEVLGQRYPHSPKYELKPFTDQNQESFDDSHDQSCWRCSSASISSSSSNL VDLGCSHDLGEQRSSSFASQANSQSSHSSGNSTGSVLDGFVDSPVSTLRLPEIFSDSE SAMQFRKGFEEASRFLPNGQSLFVDVESDGLFLKEVKEEAKGVVDKAEKNEFSQNGSR GKKNPYPEDVNLESGRSNKQSAVYTGSTVSSEMFDKVLLNCQSVTDLRKALQDETSKN VQQSGQLKGSTGGKARGKKQGSKRNVVDLRTLLTLCAQAVASDDRRSANELLKQIRQH SSPMGDGMQRMAHYFVDGLEARLAGSGTQIYTALITKPTSAADVLKAYHLFLAACPFR KLSNFFSNKTIMNLAENAPRLHIIDFGILYGFQWPCLIRRLSSRPGGPPKLRITGIDL PQPGFRPAERVEETGLRLANYAETFKVPFEFHAIAQKWDTIQIEDLRIDSDEVLVVNC MYRLRNLLDETVVVESPRNKVLNLIRKMNPDVFILGIVNGACNAPFFITRFREALFHY STLFDMLETNVPREIPERMLIEREIFGWEAMNVIACEGAERIERLETYKQWQVRISRA GLRQLCK" CDS 1873929..1876142 /locus_tag="TCM_042705" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021920t2" /codon_start=1 /product="GRAS family transcription factor isoform 1" /protein_id="EOY18043.1" /db_xref="Phytozome:POPTR_0008s05750.2" /db_xref="TAIR:AT1G07530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMJ2" /translation="MDRSLKGLYGSVDRFRLNDDTVLAFSGRNFDDGFQKETYVDIPP LQPAPMPRNLVPSSSVNEEGDSHEDYDFSDVVLKYINQMLMEEDMEDKTCMFKESSAA LQAAEKSFYEVLGQRYPHSPKYELKPFTDQNQESFDDSHDQSCWRCSSASISSSSSNL VDLGCSHDLGEQRSSSFASQANSQSSHSSGNSTGSVLDGFVDSPVSTLRLPEIFSDSE SAMQFRKGFEEASRFLPNGQSLFVDVESDGLFLKEVKEEAKGVVDKAEKNEFSQNGSR GKKNPYPEDVNLESGRSNKQSAVYTGSTVSSEMFDKVLLNCQSVTDLRKALQDETSKN VQQSGQLKGSTGGKARGKKQGSKRNVVDLRTLLTLCAQAVASDDRRSANELLKQIRQH SSPMGDGMQRMAHYFVDGLEARLAGSGTQIYTALITKPTSAADVLKAYHLFLAACPFR KLSNFFSNKTIMNLAENAPRLHIIDFGILYGFQWPCLIRRLSSRPGGPPKLRITGIDL PQPGFRPAERVEETGLRLANYAETFKVPFEFHAIAQKWDTIQIEDLRIDSDEVLVVNC MYRLRNLLDETVVVESPRNKVLNLIRKMNPDVFILGIVNGACNAPFFITRFREALFHY STLFDMLETNVPREIPERMLIEREIFGWEAMNVIACEGAERIERLETYKQWQVRISRA GLRQLPLNEEIMKTAKERVDTSYHKDFVIDEDNRWLLQGWKGRIVYALSSWVPAS" CDS 1873929..1876142 /locus_tag="TCM_042705" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021920t2" /codon_start=1 /product="GRAS family transcription factor isoform 1" /protein_id="EOY18045.1" /db_xref="Phytozome:POPTR_0008s05750.2" /db_xref="TAIR:AT1G07530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMJ2" /translation="MDRSLKGLYGSVDRFRLNDDTVLAFSGRNFDDGFQKETYVDIPP LQPAPMPRNLVPSSSVNEEGDSHEDYDFSDVVLKYINQMLMEEDMEDKTCMFKESSAA LQAAEKSFYEVLGQRYPHSPKYELKPFTDQNQESFDDSHDQSCWRCSSASISSSSSNL VDLGCSHDLGEQRSSSFASQANSQSSHSSGNSTGSVLDGFVDSPVSTLRLPEIFSDSE SAMQFRKGFEEASRFLPNGQSLFVDVESDGLFLKEVKEEAKGVVDKAEKNEFSQNGSR GKKNPYPEDVNLESGRSNKQSAVYTGSTVSSEMFDKVLLNCQSVTDLRKALQDETSKN VQQSGQLKGSTGGKARGKKQGSKRNVVDLRTLLTLCAQAVASDDRRSANELLKQIRQH SSPMGDGMQRMAHYFVDGLEARLAGSGTQIYTALITKPTSAADVLKAYHLFLAACPFR KLSNFFSNKTIMNLAENAPRLHIIDFGILYGFQWPCLIRRLSSRPGGPPKLRITGIDL PQPGFRPAERVEETGLRLANYAETFKVPFEFHAIAQKWDTIQIEDLRIDSDEVLVVNC MYRLRNLLDETVVVESPRNKVLNLIRKMNPDVFILGIVNGACNAPFFITRFREALFHY STLFDMLETNVPREIPERMLIEREIFGWEAMNVIACEGAERIERLETYKQWQVRISRA GLRQLPLNEEIMKTAKERVDTSYHKDFVIDEDNRWLLQGWKGRIVYALSSWVPAS" gene 1878657..1880660 /locus_tag="TCM_042706" /note="dbxref CacaoGD:Thecc1EG042706" mRNA join(1878657..1878836,1878917..1879003,1879098..1879160, 1879257..1879358,1880007..1880168,1880254..1880299) /locus_tag="TCM_042706" /product="FtsJ-like methyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20970.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016519001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1359t1; inference alignment:Newbler:10:TSA:cgbaB_g01379t00001" mRNA join(1878725..1878836,1878917..1879003,1879098..1879160, 1879257..1879358,1879919..1880168,1880254..1880660) /locus_tag="TCM_042706" /product="FtsJ-like methyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20970.1" /inference="similar to AA sequence:ricco:27568.m000254" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01379t00001; inference alignment:Newbler:10:TSA:cgbaB_g01379t00001" CDS join(1878759..1878836,1878917..1879003,1879098..1879160, 1879257..1879358,1879919..1880168,1880254..1880366) /locus_tag="TCM_042706" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27568.m000254" /codon_start=1 /product="FtsJ-like methyltransferase family protein isoform 1" /protein_id="EOY18046.1" /db_xref="TAIR:AT5G13830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SXH3" /translation="MSGAGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSAIL DLGCAPGAWLQVACQSLGPLKNGGAVVGIDLKKVKVPSLHCDSRVQTVSADVMKLPKQ QVMELSPQKKGFSVILSDMCPLVSGITTKDAALSFELGMRALDLAVGRAANLSDDNFQ SEGESYTSGPDDNGVLLSRGHLVIKLLESEDIKELCQTCKSLFKKASWLRPKATRSSS REIYLICQDLQS" CDS join(1878759..1878836,1878917..1879003,1879098..1879160, 1879257..1879358,1880007..1880165) /locus_tag="TCM_042706" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="FtsJ-like methyltransferase family protein isoform 2" /protein_id="EOY18047.1" /db_xref="Phytozome:GSVIVT01016519001" /db_xref="TAIR:AT5G13830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SXH3" /translation="MSGAGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSAIL DLGCAPGAWLQVACQSLGPLKNGGAVVGIDLKKVKVPSLHCDSRVQTVSADVMKLPKQ QVMELSPQVCEHLIWLLVELPTFQMIIFKVKESHTLLVQMIMVYCYPEGISSLSFWRA RI" gene complement(1880870..1885147) /locus_tag="TCM_042707" /note="dbxref CacaoGD:Thecc1EG042707" mRNA complement(join(1880870..1881201,1881296..1881364, 1881471..1881533,1881626..1881727,1881825..1882019, 1882137..1882199,1882324..1882503,1882629..1882733, 1882878..1883000,1883189..1884917,1885019..1885147)) /locus_tag="TCM_042707" /product="FIZZY-related 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:27568.m000255" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016144t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20960.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc326t16; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc326t16" mRNA complement(join(1880880..1881201,1881296..1881364, 1881471..1881533,1881626..1881727,1881825..1882001, 1882137..1882199,1882324..1882503,1882629..1882733, 1882878..1883000,1883189..1884144)) /locus_tag="TCM_042707" /product="Fizzy-related 3 isoform 2" /inference="alignment:exonerate- protein:2:ricco:27568.m000255" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016144t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20960.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1238t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc326t16" CDS complement(join(1881148..1881201,1881296..1881364, 1881471..1881533,1881626..1881727,1881825..1882001, 1882137..1882199,1882324..1882503,1882629..1882733, 1882878..1883000,1883189..1883692)) /locus_tag="TCM_042707" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016144t1" /codon_start=1 /product="Fizzy-related 3 isoform 2" /protein_id="EOY18049.1" /db_xref="Phytozome:POPTR_0010s20960.1" /db_xref="TAIR:AT5G13840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L3Z8" /translation="MDSPQRRKSGLNLPAGMNETSLRLETFSGSSSSFRTVSISSPRM ISSLTSPSSSKSSTCSDRFIPCRSSSRLHTFGLIDKESPAKEGGNETYSRILRSELFG SDFGSFSPAGQGSPMSPNKNMLRFKTEHSGPNSPYSPSILGQDSGFSNEASTPPKPPR KVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTKLCDLGP NDSVCGVQWTREGSYISIGTNLGQVQVWDGTQCKRVRTMGGHQTRTGVLAWNSRILSS GSRDRNILQHDLRVSSDYVSKLVGHKSEVCGLKWSHDDRELASGGNDNQHSQQPILKL TEHTAAVKAIAWSPHQSNLLASGGGTADRCIRFWNTTNGHQLNSIDTGSQVCNLSWSK NVNELVSTHGYSQNQIMVWKYPSMAKVATLTGHSLRVLYLAMSPDGQTIVTGAGDETL RFWNVFPSVKTPTPVKDTGLWSLGRTYIR" CDS complement(join(1881148..1881201,1881296..1881364, 1881471..1881533,1881626..1881727,1881825..1882019, 1882137..1882199,1882324..1882503,1882629..1882733, 1882878..1883000,1883189..1883692)) /locus_tag="TCM_042707" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016144t1" /codon_start=1 /product="FIZZY-related 3 isoform 1" /protein_id="EOY18048.1" /db_xref="Phytozome:POPTR_0010s20960.1" /db_xref="TAIR:AT5G13840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L3Z8" /translation="MDSPQRRKSGLNLPAGMNETSLRLETFSGSSSSFRTVSISSPRM ISSLTSPSSSKSSTCSDRFIPCRSSSRLHTFGLIDKESPAKEGGNETYSRILRSELFG SDFGSFSPAGQGSPMSPNKNMLRFKTEHSGPNSPYSPSILGQDSGFSNEASTPPKPPR KVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTKLCDLGP NDSVCGVQWTREGSYISIGTNLGQVQVWDGTQCKRVRTMGGHQTRTGVLAWNSRILSS GSRDRNILQHDLRVSSDYVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ QPILKLTEHTAAVKAIAWSPHQSNLLASGGGTADRCIRFWNTTNGHQLNSIDTGSQVC NLSWSKNVNELVSTHGYSQNQIMVWKYPSMAKVATLTGHSLRVLYLAMSPDGQTIVTG AGDETLRFWNVFPSVKTPTPVKDTGLWSLGRTYIR" gene complement(1882973..1888753) /locus_tag="TCM_042708" /note="dbxref CacaoGD:Thecc1EG042708" mRNA complement(join(1882973..1883000,1883189..1884917, 1885019..1885358,1885586..1885713,1886011..1886454, 1886522..1886612,1886701..1886810,1887212..1887321, 1887559..1887661,1887971..1888015,1888251..1888375, 1888462..1888532,1888610..1888753)) /locus_tag="TCM_042708" /product="Actin-related protein 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20950.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20950.1" /note="quality class is strong-expresste, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7717t12" CDS complement(join(1884408..1884917,1885019..1885358, 1885586..1885713,1886011..1886454,1886522..1886612, 1886701..1886810,1887212..1887321,1887559..1887661, 1887971..1888015,1888251..1888375,1888462..1888532, 1888610..1888710)) /locus_tag="TCM_042708" /codon_start=1 /product="Actin-related protein 5" /protein_id="EOY18050.1" /db_xref="Phytozome:POPTR_0010s20950.1" /db_xref="TAIR:AT3G12380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940Z2" /translation="MPFISKIQRQTDYDLFPSSTPIVIDNGASYFRIGWAGENEPRVV FRNIVQRPRHKATGETVTIVGDHDPALLRYFDCTRSGPRSAFDSNVVFQFEIMEYILD FAFDRLGANGSRIDHPVLITECVCNPVQSRSKMAELLFETYGVPSVAFGVDAAFSYKY NQQHGICDKDGLAICPGFTTTHVIPFVDGEPVYKGCCRTNIGGYHVTDHLKQLLSLKY PHHMARFTWEKVEDLKMEHCYVALDYALEAQLFQKGGKEAEDKSRCWQLPWVPPPMEE PPSEEEIARKAAIRERQGQRLREMAEAKRSSRINELENQLHGLEFLLQQLEQVQQEEI QSFLSETGYVSKQEIESTLMKVSQSLRKAKGEPKAEQAENEEKADSSTSEKYPLVNVP DNVLTPEQLKEKKRQVFLKTTTEGRQRAKQKRFEEELEREKKNQQDEERRLENPELYL DQMHSKYKELYEKVEQRKRLKTNGGHANGNNLSGGVGRGERLNAAQRERMRLLTTAAF DRGKGEDTFGAKDEDWQLYKLMSKDNDDDDDGADVDEAELARVCARLQEIDPTFVPKP ELTAAQPATAEAPRARPLTKEDFQIVLGVERFRCPEILFHPNLVGIDQAGFDEMTGVS IRRLPSKDGALEDRLTSSVFMTGGCCLFPGISERLEAGIRMLRPCGSPIKVVRALDPV RDAWRGASVYAANLQFPQQTFSRADYYEKGEDWLRRYQLRYTL" gene 1890289..1891376 /locus_tag="TCM_042709" /note="dbxref CacaoGD:Thecc1EG042709" mRNA join(1890289..1890772,1890850..1891376) /locus_tag="TCM_042709" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage" CDS join(1890673..1890772,1890850..1891184) /locus_tag="TCM_042709" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18051.1" /translation="MSTPHLLKGPTPTERDPKSPSFKRQIKQPRVMPHKSKKPPIVPR RHHPAKLSRIKSAPNLPFPFHLFRFCFSVFPLSVMEIYEHEEGYMTPRRPIQTASPPC PPAPKKKRPVYEKVEPPKGGFFKPPGLEALFSDLVPRREACV" mobile_element complement(1891793..1891865) /note="source:CACAO_M_S_E7994_F98_scaffold_2 2027 2083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1891809..1891880 /note="source:scaffold_1_CACTA_0006 8450 8523" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1896931..1896970 /note="source:CACAO_M_E22886_F96_scaffold_3 706 745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1900166..1900303) /note="source:INTACT475_F17_scaffold_8-int 2825 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1909643..1909688 /note="source:scaffold_4_CACTA_0483 4617 4662" /mobile_element_type="transposon:TIR/CACTA" gene 1911528..1912293 /locus_tag="TCM_042711" /note="dbxref CacaoGD:Thecc1EG042711" mRNA 1911528..1912293 /locus_tag="TCM_042711" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05800.1" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc732t1" CDS 1911738..1912049 /locus_tag="TCM_042711" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18052.1" /translation="MINGSCQRKKAHQEAGLLQHLHSSRILLLLPPLIRDVLLQGNAP GWSKSKGHVFTSCGAALPCLYAGVTTLILEKKPKTESALSFFPFSLRWFLGLFGVSLA S" mobile_element 1912043..1912113 /note="source:INTACT510_F235_scaffold_5-int 2287 2364" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1916398..1920576 /locus_tag="TCM_042712" /note="dbxref CacaoGD:Thecc1EG042712" mRNA join(1916398..1916956,1918817..1918916,1919005..1919065, 1919192..1919321,1919481..1919614,1919693..1919772, 1920000..1920092,1920202..1920576) /locus_tag="TCM_042712" /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20920.1" /inference="similar to AA sequence:ricco:27568.m000262" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11962t00001" CDS join(1916848..1916956,1918817..1918916,1919005..1919065, 1919192..1919321,1919481..1919614,1919693..1919772, 1920000..1920092,1920202..1920352) /locus_tag="TCM_042712" /note="dbxref ricco:27568.m000262" /codon_start=1 /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein" /protein_id="EOY18053.1" /db_xref="TAIR:AT3G55520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q65XG1" /translation="MATRIDGDLSRNIARDPTRIPNHSLFLSILSPRSSPGMIRVSDF GLHEKGSDCCCNVLSTCLFFVNMQECSLNCFTFLSFVVRLVVHCLKVFNSLDTMDDVI DLTGDGGVVKKIITRAKAGALAPSEDLPMVDVHYEGTLAETGEVFDTTHEDNSVFSFE LGKGTVIQAWDIALKTMKVGEVAKITCKPEYAYGSAGSPPDIPPNATLIFEVELLSCR PRKGSSLGSASEERARLEELKKQRELAAAVKEEEKKKREEAKAAAAARIQAKLEAKKG QGKGKGKAK" gene complement(1920556..1924396) /locus_tag="TCM_042713" /note="dbxref CacaoGD:Thecc1EG042713" mRNA complement(join(1920556..1920704,1920864..1921059, 1921313..1921438,1921862..1921904,1922503..1922617, 1922777..1923005,1923115..1923167,1923256..1923310, 1923597..1923794,1924188..1924390)) /locus_tag="TCM_042713" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:27568.m000263" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041797t2" /inference="similar to AA sequence:ricco:27568.m000263" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02987t00001" mRNA complement(join(1920694..1921059,1921313..1921438, 1921862..1921904,1922503..1922617,1922777..1923005, 1923115..1923167,1923256..1923310,1923597..1923742, 1924188..1924396)) /locus_tag="TCM_042713" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:27568.m000263" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041797t2" /inference="similar to AA sequence:ricco:27568.m000263" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00117t00002; alternateUTRof:Thecc1EG042713t1; inference alignment:Newbler:10:TSA:cgbaL_g02987t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8234t16" mRNA complement(join(1920714..1921059,1921313..1921438, 1921862..1921904,1922503..1922617,1922777..1923005, 1923115..1923167,1923256..1923310,1923597..1923794, 1924188..1924361)) /locus_tag="TCM_042713" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:27568.m000263" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041797t2" /inference="similar to AA sequence:ricco:27568.m000263" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02987t00001; alternateUTRof:Thecc1EG042713t1; inference alignment:Newbler:10:TSA:cgbaL_g02987t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8234t16" CDS complement(join(1920940..1921059,1921313..1921438, 1921862..1921904,1922503..1922617,1922777..1923005, 1923115..1923167,1923256..1923310,1923597..1923674)) /locus_tag="TCM_042713" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27568.m000263; paralog of Thecc1EG041797t2" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY18054.1" /db_xref="TAIR:AT3G55530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2S6" /translation="MSFVFRGTRSDLESGLPGFIPERRAVRVHAGRPVNSNSLVFLVT VLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQAHAAAASGLLGH TELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDADNVPTATSMSEE EINALPVHKYKVSAPQSDSSMQQASSSNSPQKKHDTSNPVCGMKGSEDELTCSICLEQ VSVGDLIRSLPCLHQFHASCIDPWLRQQGTCPVCKFRAGSGWHETGEIDASYMV" CDS complement(join(1920940..1921059,1921313..1921438, 1921862..1921904,1922503..1922617,1922777..1923005, 1923115..1923167,1923256..1923310,1923597..1923674)) /locus_tag="TCM_042713" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27568.m000263; paralog of Thecc1EG041797t2" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY18055.1" /db_xref="TAIR:AT3G55530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2S6" /translation="MSFVFRGTRSDLESGLPGFIPERRAVRVHAGRPVNSNSLVFLVT VLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQAHAAAASGLLGH TELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDADNVPTATSMSEE EINALPVHKYKVSAPQSDSSMQQASSSNSPQKKHDTSNPVCGMKGSEDELTCSICLEQ VSVGDLIRSLPCLHQFHASCIDPWLRQQGTCPVCKFRAGSGWHETGEIDASYMV" CDS complement(join(1920940..1921059,1921313..1921438, 1921862..1921904,1922503..1922617,1922777..1923005, 1923115..1923167,1923256..1923310,1923597..1923674)) /locus_tag="TCM_042713" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27568.m000263; paralog of Thecc1EG041797t2" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY18056.1" /db_xref="TAIR:AT3G55530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2S6" /translation="MSFVFRGTRSDLESGLPGFIPERRAVRVHAGRPVNSNSLVFLVT VLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQAHAAAASGLLGH TELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDADNVPTATSMSEE EINALPVHKYKVSAPQSDSSMQQASSSNSPQKKHDTSNPVCGMKGSEDELTCSICLEQ VSVGDLIRSLPCLHQFHASCIDPWLRQQGTCPVCKFRAGSGWHETGEIDASYMV" gene complement(1924498..1927456) /locus_tag="TCM_042714" /note="dbxref CacaoGD:Thecc1EG042714" mRNA complement(join(1924498..1924519,1925782..1927456)) /locus_tag="TCM_042714" /product="Eukaryotic aspartyl protease family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016510001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021903t1" /inference="similar to AA sequence:ricco:27568.m000264" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9039t1" CDS complement(1926001..1927341) /locus_tag="TCM_042714" /note="dbxref ricco:27568.m000264; paralog of Thecc1EG021903t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein" /protein_id="EOY18057.1" /db_xref="TAIR:AT2G39710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZL3" /translation="MSSFRFLLLFMIFLLLLHQNFSFPSKQTLLLPLKKTLGHDPRAF RRSSKLLSSSAIATATNKLAFHHNVTLTVSLSVGSPPQNVTMVLDTGSELSWLHCKKA PNLNSIFTPQASKSYKPVPCSLPICRTRTRDLTVPASCDPNNKLCHVAVSYADASSIE GNLAYENFVIGTSTRPGFLFGCMDSGFSSNSEEDSKTTGLMGMNRGSLSFVSQMGFPK FSYCISGFDSSGVLLLGDASFSWLKGLSYTPLIQISDPLPYYDRVAYTVQLEGIKVGN KMLNLPRSAFLPDHTGAGQTMVDSGTQFTFLLGPVYTALKNEFLQQTRGVLRVQEDPN FVFQGAMDLCYRVSNSSRAIFSNLPRVSLMFQGAEMSVSGERLLYRAPGMNKGSDSVY CFTFGNSDLLGIEAFVIGHHHQQNVWMEFDLVKSRVGFAEMRCDLAGQRLGMGL" gene complement(1935389..1937081) /locus_tag="TCM_042715" /note="dbxref CacaoGD:Thecc1EG042715" mRNA complement(1935389..1937081) /locus_tag="TCM_042715" /product="RING-H2 finger C2A, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016510001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021900t1" /inference="similar to AA sequence:Phytozome:Glyma11g34160.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9191t5_C2" CDS complement(1935756..1936931) /locus_tag="TCM_042715" /note="paralog of Thecc1EG021900t1" /codon_start=1 /product="RING-H2 finger C2A, putative" /protein_id="EOY18058.1" /db_xref="Phytozome:Glyma11g34160.1" /db_xref="TAIR:AT2G39720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMK0" /translation="MATATTSYWCYRCSRFVQIFNQDPITCPGCDGGFVEEIENPSHT ARTVQAGSHRFGSHRFPAASMYTNTTPTTSTILRRSRRNGGDRSPFNPVIVLRGGAAT TTSSAASPSSASGENSNVEHNGRGFELYYDDGGGSGLRPLPPSMSEFLLGSGFDRLID QLSQMEIQNVGRYEQPPASKAAVEAMPTVEIDETHVCNELYCAVCKEQFELGTKVRNM PCNHLYHSNCILPWLQLRNSCPVCRHELPAAVGEEGSESGGGNLNSSEEVPVGLTIWR LPGGGFAVGRFSGGRRGGAGENREFPVVYTEMDGGFSGGGLPRRVSWGSRGSRGRERG GFFGRLLGNLFGCFGGSSSSRLDSRISRSSRSLLLFTASSRRRRGWAVEVDSGRRRW" gene complement(1943043..1949762) /locus_tag="TCM_042716" /note="dbxref CacaoGD:Thecc1EG042716" mRNA complement(join(1943043..1944038,1944131..1944930, 1949423..1949762)) /locus_tag="TCM_042716" /product="Glycerol-3-phosphate acyltransferase 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010070t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20880.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1163t1" CDS complement(join(1943121..1944038,1944131..1944679)) /locus_tag="TCM_042716" /note="paralog of Thecc1EG010070t1" /codon_start=1 /product="Glycerol-3-phosphate acyltransferase 5" /protein_id="EOY18059.1" /db_xref="Phytozome:POPTR_0010s20880.1" /db_xref="TAIR:AT3G11430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BM58" /translation="MESVVSELEGVLLKDPDPFCYFMLVAFEASGLIRFALLLLFWPL IRLLDMLGLDDAGLKLMTFVATAGLREAEIESVSRAVLPKFYMDDVDMEAWKVFSSYD KRVVVTKTPRIMVARFVKEHLRADEVLGSELVVNRFGFATGFVKGDIASISSRVAKLF VDEEPTLGLGRAPSSFQFLSLCKKQMHPPLMTNQNLHDHQLLRPLPVIFHDGRLVKRP TPSTALLILLWMPLGILLATIRIVVGLILPMRVIPYMSRLFGGKIIVKGKQPPPVSGS SSGVLFVCTHRTLMDPVVLSAVLMRKIPAVTYSISRLSEILSPIPTVRLTRIREVDAE KIKRELAKGDLVVCPEGTTCREPFLLRFSALFAELTDRIVPVAMNYRVGFFHATTARG WKGLDPIFFFMNPRPVYEVTFLNQLPAEATCSSGKSPHDVANYVQRILAATLGFECTN FTRKDKYRVLAGNDGTVSCTSFVDQVKKVVSTFKPFFQ" gene complement(1945339..1946361) /locus_tag="TCM_042717" /note="dbxref CacaoGD:Thecc1EG042717" mRNA complement(join(1945339..1945801,1945933..1946361)) /locus_tag="TCM_042717" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage" CDS complement(join(1945579..1945801,1945933..1946003)) /locus_tag="TCM_042717" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18060.1" /translation="MTDWTSYNEFIARYNIDTVVSMVAFQQGWLLKLQVLGTQQLAQP APVLWKQDEQLIFSSNNEQKTYRERLNRILSWDCRILEEDEEASQSQRLSEGY" gene complement(1946658..1949571) /locus_tag="TCM_042718" /note="dbxref CacaoGD:Thecc1EG042718" mRNA complement(join(1946658..1946970,1947406..1947499, 1947667..1947701,1947786..1947853,1948045..1948197, 1948351..1948460,1948545..1948672,1949423..1949571)) /locus_tag="TCM_042718" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037330001.2" /note="transcript variant 1; alternatively spliced; quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00183t00003" mRNA complement(join(1947231..1947499,1947567..1947701, 1947786..1948197,1948351..1948460,1948545..1948672, 1949423..1949571)) /locus_tag="TCM_042718" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037330001.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:PASA:2:TSA:puevd3b041243t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00183t00003" CDS complement(join(1947801..1947853,1948045..1948197, 1948351..1948460,1948545..1948672,1949423..1949536)) /locus_tag="TCM_042718" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18061.1" /translation="MGIAHFRLQFRVFFRDPLFRFEIVFAAQFANIASAFFSESDPFI WLRHVNSQVRGLRELEGKCNHKAHGFCATPKTQPAHLKKQALVVPSGTSDKIGTIQRR LAWPLRKDDTHKSRNGGQFCVNHAKNFAFSGYERAWLILNARCVLLQTDAVAAIYKLP LFGCLIFLGRFKEMKYYGNREVPPN" CDS complement(join(1948034..1948197,1948351..1948460, 1948545..1948672,1949423..1949536)) /locus_tag="TCM_042718" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18062.1" /translation="MGIAHFRLQFRVFFRDPLFRFEIVFAAQFANIASAFFSESDPFI WLRHVNSQVRGLRELEGKCNHKAHGFCATPKTQPAHLKKQALVVPSGTSDKIGTIQRR LAWPLRKDDTHKSRNGGQFCVNHAKNFAFSGYERAWLILNARCVLLQTDAVAAIYKLP LFGCLIFLGRI" mobile_element 1950002..1950075 /note="source:scaffold_9_CACTA_0946 17762 17835" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1950133..1953042) /note="source:CACAO_M_E85275_F302_scaffold_10 1 2910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1952985..1953054 /note="source:scaffold_5_CACTA_0596 14486 14555" /mobile_element_type="transposon:TIR/CACTA" gene complement(1954502..1957551) /locus_tag="TCM_042719" /note="dbxref CacaoGD:Thecc1EG042719" mRNA complement(join(1954502..1955618,1957281..1957551)) /locus_tag="TCM_042719" /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018810001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000237t2" /inference="similar to AA sequence:Phytozome:GSVIVT01018810001" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc310t25_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1177t1" CDS complement(1954635..1955615) /locus_tag="TCM_042719" /note="paralog of Thecc1EG000237t2" /codon_start=1 /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative" /protein_id="EOY18063.1" /db_xref="Phytozome:GSVIVT01018810001" /db_xref="TAIR:AT2G16530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SI62" /translation="MDTMKTCFIWLLRAGWAAGTLPFLIASLPCSRLGSFHTLVLGYV KRGKIMPSSSSHKLTVPQSFYLHFYLLAVVWTTVLLMGTWWFADKVAPLSHLTGGGSH VFSLHKSGFTSADDRLTVCKSVFLLLLMEIHVLRRLYETLFVFNYSSSARMHVVGYFT GICYYIAAPLSLSTFCAADQVAEFNVEGQEMVSITGFDLRGYVKPITSLGWCQWAGAA IFAWGWLHQCSCHAILGSLRTHRSDQTVEYVIPRGDWFNIVSSPHYLAEMVIYVGLLV ASGGTDLTIWLLLGFVVANLAFAAADTHRWYLHKFEDYPPDRWAILPFVY" mobile_element 1955690..1956413 /note="source:CACAO_PIF_E144_scaffold_10 1202 1911" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 1956669..1956864 /note="source:scaffold_9_CACTA_0946 17771 17998" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1957190..1957730) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17224 17771" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1958706..1960379 /note="source:scaffold_10_CACTA_0130 7927 9600" /mobile_element_type="transposon:TIR/CACTA" gene 1962767..1970460 /locus_tag="TCM_042720" /note="dbxref CacaoGD:Thecc1EG042720" mRNA join(1962767..1963903,1965289..1966823,1967205..>1967232) /locus_tag="TCM_042720" /product="Pumilio 2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05850.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041794t2" /inference="similar to AA sequence:ricco:30143.m001162" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc39t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc40t10" mRNA join(1962767..1963903,1965289..1966717,1966796..1966823, 1966905..>1967046) /locus_tag="TCM_042720" /product="Pumilio 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05850.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041794t1" /inference="similar to AA sequence:ricco:30143.m001162" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc39t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc40t10" mRNA join(1962796..1963903,1965289..1966823,1966905..1967046, 1967205..1967312,1967631..1967843,1967958..1968068, 1968723..1968917,1969318..1969492,1969965..1970043, 1970175..1970460) /locus_tag="TCM_042720" /product="Pumilio 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05850.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041794t1" /inference="similar to AA sequence:ricco:30143.m001164" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc40t10" CDS join(1963373..1963903,1965289..1966823,1966905..1967046, 1967205..1967312,1967631..1967843,1967958..1968068, 1968723..1968917,1969318..1969492,1969965..1970005) /locus_tag="TCM_042720" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30143.m001164; paralog of Thecc1EG041794t1" /codon_start=1 /product="Pumilio 2 isoform 1" /protein_id="EOY18064.1" /db_xref="TAIR:AT2G29200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMK2" /translation="MMSMLKNPDFTEDLGKLIRDQKHQDGATDSISSDLEKELNIYRS GSAPPTVEGSLNSIGGLFNSKGGILSEEELRADPAYVNYYYSNGNLNPRLPPPLLSRE DWRFAQRLQGGNGNNGNNGSDENRSLFAVQPGFGEEEENGGGGSGVKWGGGDGLIGLP GLGGLGTRQKSIAEIFQDDINHVTNASRHPSRPASRNAFDDGNGSSEAQFANLHHELT SVDALRSSANKPGMPSVQNVGSSASHTYASALGLSLSRSTTPDPQLAARAPSPRIPPI GGRSSSMDKRSVTGSNSFNGVSSNSFNGISASVGESAELVAALSGLNLSTNGVIDKEN HSRSQAHHGIDDNQNLINRQVDQKHIKQNSYLNKLEPEHFHSHSIAQSAKGPYLNMGK SSGVGMDFKKSSLMADGQVELRKSANSYSKGSSTPTVNGAGSPPNHQNLDNMNSPFPN YGLSGFSINPSSPPMMGNQLGTGSLPPLFENVAALSAMGGTGLESRALAGGLAMNPNL MAAAVELQNLSRLGNHNSGNALQAPLLDPLYLQYLRSNELAAAQVAALNDAMVDREYS GNSYMDLLGIQKAYLGALLSPQKSYYGNPALALGMSYPGSPLAGPLFPSSAVGSGSPV RHSERNMRFASGLRNVPGGVMGAWHSEAAGNLDESFASSLLDEFKSNKTKCFELSEIA GHVVEFSADQYGSRFIQQKLETATIEEKNMVFHEIMPQALSLMTDVFGNYVIQKFFEH GSASQIRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQKTRMVKELDGHVMRCVR DQNGNHVIQKCIECVPEDAIQFIVSTFYDQVVTLSTHPYGCRVIQRVLEHCHEAKTQH IMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNV IEKCLTFGTPVERQNLVDEMLGSTDENEPLQVMMKDQFANYVVQKVLETCDDQQLELI LNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISILTPNPAA" CDS join(1963373..1963903,1965289..1966823,1967205..>1967232) /locus_tag="TCM_042720" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30143.m001162; paralog of Thecc1EG041794t2" /codon_start=1 /product="Pumilio 2 isoform 4" /protein_id="EOY18067.1" /db_xref="TAIR:AT2G29200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJ97" /translation="MMSMLKNPDFTEDLGKLIRDQKHQDGATDSISSDLEKELNIYRS GSAPPTVEGSLNSIGGLFNSKGGILSEEELRADPAYVNYYYSNGNLNPRLPPPLLSRE DWRFAQRLQGGNGNNGNNGSDENRSLFAVQPGFGEEEENGGGGSGVKWGGGDGLIGLP GLGGLGTRQKSIAEIFQDDINHVTNASRHPSRPASRNAFDDGNGSSEAQFANLHHELT SVDALRSSANKPGMPSVQNVGSSASHTYASALGLSLSRSTTPDPQLAARAPSPRIPPI GGRSSSMDKRSVTGSNSFNGVSSNSFNGISASVGESAELVAALSGLNLSTNGVIDKEN HSRSQAHHGIDDNQNLINRQVDQKHIKQNSYLNKLEPEHFHSHSIAQSAKGPYLNMGK SSGVGMDFKKSSLMADGQVELRKSANSYSKGSSTPTVNGAGSPPNHQNLDNMNSPFPN YGLSGFSINPSSPPMMGNQLGTGSLPPLFENVAALSAMGGTGLESRALAGGLAMNPNL MAAAVELQNLSRLGNHNSGNALQAPLLDPLYLQYLRSNELAAAQVAALNDAMVDREYS GNSYMDLLGIQKAYLGALLSPQKSYYGNPALALGMSYPGSPLAGPLFPSSAVGSGSPV RHSERNMRFASGLRNVPGGVMGAWHSEAAGNLDESFASSLLDEFKSNKTKCFELSEIA GHVVEFSFLSMDLHPK" CDS join(1963373..1963903,1965289..1966717,1966796..1966823, 1966905..>1967046) /locus_tag="TCM_042720" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30143.m001162; paralog of Thecc1EG041794t1" /codon_start=1 /product="Pumilio 2 isoform 3" /protein_id="EOY18066.1" /db_xref="TAIR:AT2G29200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJ97" /translation="MMSMLKNPDFTEDLGKLIRDQKHQDGATDSISSDLEKELNIYRS GSAPPTVEGSLNSIGGLFNSKGGILSEEELRADPAYVNYYYSNGNLNPRLPPPLLSRE DWRFAQRLQGGNGNNGNNGSDENRSLFAVQPGFGEEEENGGGGSGVKWGGGDGLIGLP GLGGLGTRQKSIAEIFQDDINHVTNASRHPSRPASRNAFDDGNGSSEAQFANLHHELT SVDALRSSANKPGMPSVQNVGSSASHTYASALGLSLSRSTTPDPQLAARAPSPRIPPI GGRSSSMDKRSVTGSNSFNGVSSNSFNGISASVGESAELVAALSGLNLSTNGVIDKEN HSRSQAHHGIDDNQNLINRQVDQKHIKQNSYLNKLEPEHFHSHSIAQSAKGPYLNMGK SSGVGMDFKKSSLMADGQVELRKSANSYSKGSSTPTVNGAGSPPNHQNLDNMNSPFPN YGLSGFSINPSSPPMMGNQLGTGSLPPLFENVAALSAMGGTGLESRALAGGLAMNPNL MAAAVELQNLSRLGNHNSGNALQAPLLDPLYLQYLRSNELAAAQVAALNDAMVDREYS GNSYMDLLGIQKAYLGALLSPQKSYYGNPALALGMSYPGSPLAGPLFPSSAVGSGSPV RHSERNMRFASGLRNVPGGVMGAWHSEAAEIAGHVVEFSADQYGSRFIQQKLETATIE EKNMVFHEIMPQALSLMTDVFGNYVIQK" mRNA join(1963782..1963903,1965289..1966717,1967203..1967312, 1967631..1967843,1967958..1968068,1968723..1968917, 1969318..1969492,1969965..1970415) /locus_tag="TCM_042720" /product="Pumilio 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05850.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041794t1" /inference="similar to AA sequence:frave:gene30201" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc19900t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc40t10" CDS join(1965451..1966717,1967203..1967312,1967631..1967843, 1967958..1968068,1968723..1968917,1969318..1969492, 1969965..1970005) /locus_tag="TCM_042720" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene30201; paralog of Thecc1EG041794t1" /codon_start=1 /product="Pumilio 2 isoform 2" /protein_id="EOY18065.1" /db_xref="TAIR:AT2G29190.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJ97" /translation="MPSVQNVGSSASHTYASALGLSLSRSTTPDPQLAARAPSPRIPP IGGRSSSMDKRSVTGSNSFNGVSSNSFNGISASVGESAELVAALSGLNLSTNGVIDKE NHSRSQAHHGIDDNQNLINRQVDQKHIKQNSYLNKLEPEHFHSHSIAQSAKGPYLNMG KSSGVGMDFKKSSLMADGQVELRKSANSYSKGSSTPTVNGAGSPPNHQNLDNMNSPFP NYGLSGFSINPSSPPMMGNQLGTGSLPPLFENVAALSAMGGTGLESRALAGGLAMNPN LMAAAVELQNLSRLGNHNSGNALQAPLLDPLYLQYLRSNELAAAQVAALNDAMVDREY SGNSYMDLLGIQKAYLGALLSPQKSYYGNPALALGMSYPGSPLAGPLFPSSAVGSGSP VRHSERNMRFASGLRNVPGGVMGAWHSEAAEFFEHGSASQIRELADQLTGHVLTLSLQ MYGCRVIQKAIEVVELDQKTRMVKELDGHVMRCVRDQNGNHVIQKCIECVPEDAIQFI VSTFYDQVVTLSTHPYGCRVIQRVLEHCHEAKTQHIMMDEILQSVCMLAQDQYGNYVV QHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLTFGTPVERQNLVDEMLGS TDENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVAR VEKLVAAGERRISILTPNPAA" gene complement(1970485..1972051) /locus_tag="TCM_042721" /note="dbxref CacaoGD:Thecc1EG042721" mRNA complement(join(1970485..1970908,1971051..1971373, 1971640..1971880,1972012..1972051)) /locus_tag="TCM_042721" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g16190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042722t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20850.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1915t1" CDS complement(join(1970876..1970908,1971051..1971373, 1971640..1971841)) /locus_tag="TCM_042721" /note="paralog of Thecc1EG042722t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /protein_id="EOY18068.1" /db_xref="Phytozome:POPTR_0010s20850.1" /db_xref="TAIR:AT3G21420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLQ8" /translation="MKAAVAAFFELSPEEKKKYATPENDIQGYGQAYVVSDEQKLDWC DIVLLITLPPEIRNLKFWPDSLPGRQWISTREVQKVADEICANISLLMGMAGEGLKRF YGKTKQAMRMNYYPPCSRPDLVVGISPHSDSDIITLLLQDDDIPGLQIKHKHRWFLVK PIPNAIVVNVGHVMEILSNGMYRSI" gene complement(1972788..1974815) /locus_tag="TCM_042722" /note="dbxref CacaoGD:Thecc1EG042722" mRNA complement(join(1972788..1973376,1973486..1973810, 1974028..1974275,1974356..1974815)) /locus_tag="TCM_042722" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016505001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015774t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016505001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03590t00001" CDS complement(join(1973122..1973376,1973486..1973810, 1974028..1974275,1974356..1974631)) /locus_tag="TCM_042722" /note="paralog of Thecc1EG015774t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein, putative" /protein_id="EOY18069.1" /db_xref="Phytozome:GSVIVT01016505001" /db_xref="TAIR:AT3G21420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLQ8" /translation="MELKVESGGIQEDGNLGWGRSLPVPSIQEIVRNDSNSVPDRYIQ EHKDRPQVSENLHASLDIPVLDFSLLAKGDENERRKLHLACKEWGFFQITNHGMAKEV LHKMKTAVAAFFELPLQEKKKYAMAANDLQGYGQAYVVSEEQKLDWNDIIFLITLPTE KRNFKFWPVTSPGFKEAVDQYSTELQKVAAEIYANLSVLMGLDRDGLLELLGELKQGI RMNYYPSCPRPDLVLGISPHSDGSALTLLLQDDEVTALQIKHEESWVDVKPIPNSLVV NIGDAIEILSNGVYKSIEHRAITNEKKERISIATFVFPDEEQEIGPLESMVDELHRPR MYRKIEYVDYLRQVLNRRMEGKAHTDIVKLDNK" gene complement(1976949..1979620) /locus_tag="TCM_042723" /note="dbxref CacaoGD:Thecc1EG042723" mRNA complement(join(1976949..1977760,1977899..1978223, 1978379..1978417,1979379..1979620)) /locus_tag="TCM_042723" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042722t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016505001" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1478t3_C2" CDS complement(join(1977506..1977760,1977899..1978223, 1978379..1978417,1979379..1979455)) /locus_tag="TCM_042723" /note="paralog of Thecc1EG042722t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /protein_id="EOY18070.1" /db_xref="Phytozome:GSVIVT01016505001" /db_xref="TAIR:AT3G21420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLQ8" /translation="MEVSQEDKDMVGLNFRQFQRSKPTVMNFKFSPLSLPGSKDAIEE CSAEVQKVAEELYANFSVLMGLDRDGLKRLQGELKQGIRMNYYPVCSRPDLVLGISPH SDGSTFTLLLQDDEVTGLQIKHKQVWVPVKPIPNSLLVNVGDATEIQSNGMHKIIEHR AITNEEKPRISIATFVFPDDEQKIGPLESTIDDSHRPRMYRNIKYVDYIKEKFARRME GKAHTDFVKLQSK" mobile_element 1978424..1978877 /note="source:scaffold_1_CACTA_0016 1977 2431" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1979583..1979622 /note="source:CACAO_M_E44848_F172_scaffold_6 1898 1937" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1979704..1980495) /locus_tag="TCM_042724" /note="dbxref CacaoGD:Thecc1EG042724" mRNA complement(join(1979704..1980078,1980168..1980495)) /locus_tag="TCM_042724" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042722t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016505001" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03106t00002" CDS complement(join(1979824..1980078,1980168..1980359)) /locus_tag="TCM_042724" /note="paralog of Thecc1EG042722t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /protein_id="EOY18071.1" /db_xref="Phytozome:GSVIVT01016505001" /db_xref="TAIR:AT3G21420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLQ8" /translation="MNYCPPCSRPDLVLGISPHSDGGSLTLLLQDDEITGLQIRHKEE WIPVKPIPNSLVMNIGDAVEILSNGMYRSIEHRAITNEKKERISVSAFAFVDDELEIG PLDSMVEDLNRPRMYQKIKYVDYIGQVSARKMGGKAQTDLVKLQSQ" mobile_element complement(1980412..1980745) /note="source:CACAO_M_E85274_F129_scaffold_10 1 334" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1980449..1982190) /locus_tag="TCM_042725" /note="dbxref CacaoGD:Thecc1EG042725" mRNA complement(join(1980449..1980831,1980998..1981250, 1981330..1981486,1981687..1982190)) /locus_tag="TCM_042725" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042722t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20850.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1201t3" mRNA complement(join(1980560..1980831,1981003..1981250, 1981330..>1981467)) /locus_tag="TCM_042725" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042722t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20850.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is weak, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b041251t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1201t3" CDS complement(join(1980717..1980831,1981003..1981250, 1981330..>1981467)) /locus_tag="TCM_042725" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042722t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein isoform 2" /protein_id="EOY18073.1" /db_xref="Phytozome:POPTR_0010s20850.1" /db_xref="TAIR:AT3G21420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLQ8" /translation="QGQAIVSETLPASLEIPIIDFSLLAKGDGDERRKLDLARKEWGF FQITNHGVADEVLHKMKSAVAAFFALPLEEKKKYAMAENDLHGCGQGCVVSEQQKLDW CDMMALMTLPPESRNFKFWPLTLPGFKEAVEVYSTEVQKVADEINANLSPLMGMDMLN VMLASV" CDS complement(join(1980758..1980831,1980998..1981250, 1981330..1981486,1981687..1981820)) /locus_tag="TCM_042725" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042722t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein isoform 1" /protein_id="EOY18072.1" /db_xref="Phytozome:POPTR_0010s20850.1" /db_xref="TAIR:AT3G21420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLQ8" /translation="MNDSDYHLKLASQTKRKAPKLPGRNFKEDQCQIPIAFNSAEAMF LTIHSRTQGQAIVSETLPASLEIPIIDFSLLAKGDGDERRKLDLARKEWGFFQITNHG VADEVLHKMKSAVAAFFALPLEEKKKYAMAENDLHGCGQGCVVSEQQKLDWCDMMALM TLPPESRNFKFWPLTLPGFKYERQWKYTQQKFKRLLTRSMLTYHH" gene complement(1982315..1983905) /locus_tag="TCM_042726" /note="dbxref CacaoGD:Thecc1EG042726" mRNA complement(join(1982315..1983446,1983558..1983905)) /locus_tag="TCM_042726" /product="Pathogenesis-related thaumatin superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30143.m001165" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021897t1" /inference="similar to AA sequence:ricco:30143.m001165" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08075t00001" CDS complement(join(1982773..1983446,1983558..1983630)) /locus_tag="TCM_042726" /note="dbxref ricco:30143.m001165; paralog of Thecc1EG021897t1" /codon_start=1 /product="Pathogenesis-related thaumatin superfamily protein" /protein_id="EOY18074.1" /db_xref="TAIR:AT5G02140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTG2" /translation="MPTPSILFCFFFYFFCIFISFSLTDGTQLILVNNCQESIWPGIL GSAGHETPREGGFHLSCGEQTVLELPERWSGRIWPRQGCCFDQTGKGSCQTGDCAGLL ECKGTGGKPPATLVEMTLGGPTSPLHYYDVSLVDGFNVPVSMVPIGGGVGCGVAACEA DLNVCCPAALVVKKEGKVVGCKSACLAAKTDRYCCTGEFANPKSCAPTVFANLFKAIC PRAYSYAYDDSSSLKTCRAPRYVITFCPPN" gene 1985766..1990160 /locus_tag="TCM_042727" /note="dbxref CacaoGD:Thecc1EG042727" mRNA join(1985766..1985919,1986208..1988011,1988564..1988765, 1988848..1989038,1989122..1990160) /locus_tag="TCM_042727" /product="HAT and BED zinc finger domain-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:30143.m001167" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002022t1" /inference="similar to AA sequence:ricco:30143.m001167" /note="quality class is strong-expresste, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8567t1" CDS join(1986226..1988011,1988564..1988765,1988848..1989038, 1989122..1989192) /locus_tag="TCM_042727" /note="dbxref ricco:30143.m001167; paralog of Thecc1EG002022t1" /codon_start=1 /product="HAT and BED zinc finger domain-containing protein, putative" /protein_id="EOY18075.1" /db_xref="TAIR:AT3G22220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JJC1" /translation="MASNLEPIPITSQKHDPAWKHCQMFRNGERVQLKCIYCGKIFRG GGIHRIKEHLAGQKGNASTCFHVPSDVRLLMRESLDGVEVKKRKKQKIAEEMSNANQV SSEIDTYDNQVDTNTGLLMIEGPDTLQPSSSLLVNREGTSNVSGDRRKRGKGKSSAAE SNALVVNTVGLGAKRVNNHVHVAIGRFLFDIGAPLDAVNSVYFQPMVDAIISGGSGVL MPSCSDLQGWILKKSVEEVKSDNDKVTAAWVRTGCSILVNQWNTQTGRILLNFLVYCP EGTVFLKSVDASSVINSSDALYELLKQVVEEVGSKHVLQVITNAEEQYIVAGRRLAET FPTLYWTPCAAHCINLILEDFAKLEWINVIIEQARSITRFVYNHSVVLNMVRRYTLGN DIVEPAVTCSATNFTTLKQMIDLKNNLQAMVTSQEWMDCPYSKKPGGLEMLDLVSNPS FWSSSVLITQLTNPLLRVLRMVGSKKRPAMGYVYAGMYRAKETIKKELVKRNEYMIYW NIIDHWWEQQWHHPLHGAGFYLNPKFFYSMEGDMPNEMLSGMLDCIEKLVPDVKVQDK ISKEINSYKNTVGDFGRKMAVRARDTLLPAEWWSTYGGSCPNLARLAIHVLSQTCSTL GLKQNSIPFEKLHETRNFLEQQRFRDLIFVQCNLQLRQIGCESKEQVSMQPMSFDATI EDWVMGNDAFLENYTHSDWTALDPLSVNTMLLGPSSDEVEELGAGFDDYEIFNGVKEQ ENAEDNVVG" gene complement(1991060..1996430) /locus_tag="TCM_042728" /note="dbxref CacaoGD:Thecc1EG042728" mRNA complement(join(1991060..1993782,1996194..1996430)) /locus_tag="TCM_042728" /product="Concanavalin A-like lectin protein kinase family protein" /inference="alignment:exonerate- protein:2:ricco:30143.m001168" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021881t1" /inference="similar to AA sequence:ricco:30143.m001168" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage" CDS complement(1991687..1993741) /locus_tag="TCM_042728" /note="dbxref ricco:30143.m001168; paralog of Thecc1EG021881t1" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein" /protein_id="EOY18076.1" /db_xref="TAIR:AT3G55550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMK3" /translation="MAKKLVFFWVFLVCSDQVFSQLDQFIFNGFHEAGNNMSLTGVAD IGSKGLICLTNTSSRVSGHAFYSSPVRFKNSSSSKVFSFSTAFAFAMVPEYPKLGGHG LAFTLSPSKELSGFPSQYLGLLNATDNGNSTNHIFAVEFDTVKDLEFGDIDDNHVGIN LNSMVSNASASAAYFLENSTKQELSLKSGRMIQAWIDYDSARNRLEVKLSPFSEKPRS SILSFDVDLSPILQDSMFVGFSASTGLLASSHYVLGWSFNMSGEAESLSLLSLPSLPR PKENHTVLILCVTFSAVLIMMSIIFISFYLVRKLKNADIIEAWELDIGPHRFSYRELK KATRGFRDKELLGFGGFGRVYKGTLPSTNTQVAVKRISHESKQGLREFVSEIASIGRL RHRNLVQLLGWCRCRGDLLLVYDFMPNGSLDKYLFDEPKRVLSWEERFKIIKGVASGL LYLHEEWEQTVIHRDIKAGNVLLDSELNGRLGDFGLAKLYEHGQNPSTTRVVGTLGYL APELTRTGKPTTSSDVFAFGAFLLEVVCGRKPIEPKALPEELILVDWVWERWQSGAVL EVVDPKLNGEFDELEAIVVIKLGLMCSNDALEARPTIRQVVRYLAGEVALPEVVPSPG GSDSRKGNGRRGAGFEDYVHSYPDSSYFDKGSACSSAFEDRDVDIEATTPLPITDRGD GR" mobile_element complement(1994653..1994748) /note="source:scaffold_3_CACTA_0377 2479 2572" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1994950..1995052) /note="source:scaffold_9_CACTA_0942 5271 5374" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1994964..1995214 /note="source:scaffold_1_CACTA_0008 14058 14298" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1995990..1996118) /note="source:scaffold_1_CACTA_0008 7213 7352" /mobile_element_type="transposon:TIR/CACTA" gene complement(1998869..2001771) /locus_tag="TCM_042729" /note="dbxref CacaoGD:Thecc1EG042729" mRNA complement(join(1998869..1999245,1999347..1999663, 1999755..2000227,2000328..2000413,2000507..2000612, 2000733..2001058,2001490..2001771)) /locus_tag="TCM_042729" /product="Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034123001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021880t2" /inference="similar to AA sequence:Phytozome:GSVIVT01024910001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1236t1" mRNA complement(join(1999004..1999245,1999382..1999663, 1999755..2000227,2000328..2000413,2000507..2000612, 2000733..2001058,2001490..2001551)) /locus_tag="TCM_042729" /product="Rubisco activase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034123001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021880t1" /inference="similar to AA sequence:Phytozome:GSVIVT01024910001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1236t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1236t1" CDS complement(join(1999133..1999245,1999382..1999663, 1999755..2000227,2000328..2000413,2000507..2000612, 2000733..2001058,2001490..2001534)) /locus_tag="TCM_042729" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021880t1" /codon_start=1 /product="Rubisco activase isoform 2" /protein_id="EOY18078.1" /db_xref="Phytozome:GSVIVT01024910001" /db_xref="TAIR:AT2G39730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P10896" /translation="MAAAVSTIGAVNRAPLSLNGSGAGAAVPSSAFLGSSLKKVSSRF SNSKLPSVSFKVVASTESTDEEKQTDKDKWRGLAYDESDDQQDITRGKGMVDSLFQAP MNDGTHYAVMSSYEYLSQGLRTYNLDNNVDGFYIAPAFMDKLVVHISKNFMTLPNIKV PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD IIRKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKE ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDNVPDDDIV KLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTVGKKLVNSREGPPTFEQPKMT IEKLLEYGNMLVAEQENVKRVQLADKYLSEAALGDANEDSIKRGTFYGKAAQQIGVPV PEGCTDPGADNFDPTARSDDGSCTYK" CDS complement(join(1999377..1999663,1999755..2000227, 2000328..2000413,2000507..2000612,2000733..2001058, 2001490..2001534)) /locus_tag="TCM_042729" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021880t2" /codon_start=1 /product="Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform 1" /protein_id="EOY18077.1" /db_xref="Phytozome:GSVIVT01024910001" /db_xref="TAIR:AT2G39730.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O98997" /translation="MAAAVSTIGAVNRAPLSLNGSGAGAAVPSSAFLGSSLKKVSSRF SNSKLPSVSFKVVASTESTDEEKQTDKDKWRGLAYDESDDQQDITRGKGMVDSLFQAP MNDGTHYAVMSSYEYLSQGLRTYNLDNNVDGFYIAPAFMDKLVVHISKNFMTLPNIKV PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD IIRKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKE ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDNVPDDDIV KLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTVGKKLVNSREGPPTFEQPKMT IEKLLEYGNMLVAEQENVKRVQLADKYLSEAALGDANEDSIKRGTFYG" gene 2005656..2006707 /locus_tag="TCM_042730" /note="dbxref CacaoGD:Thecc1EG042730" mRNA join(2005656..2006025,2006128..2006707) /locus_tag="TCM_042730" /product="LOB domain-containing protein 29" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004106t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20800.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(2005747..2006025,2006128..2006532) /locus_tag="TCM_042730" /note="paralog of Thecc1EG004106t1" /codon_start=1 /product="LOB domain-containing protein 29" /protein_id="EOY18079.1" /db_xref="Phytozome:POPTR_0010s20800.1" /db_xref="TAIR:AT5G06080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT79" /translation="MTGLGSSCGACKFLRRKCTSECVFAPYFCYDEAASHFAAVHKVF GASNVSKLLLHLPMHNRSDAAVTISYEALARMRDPIYGCVAHIFALQQQVANLQEEIE ILINQMANHAADQVPSCGNTQAATYPDGKIQFASLHETISTVYYQDEQAALPTNHPGL LTGNQILDAQLCEPLPPSYEWEDQNFLCNFYQNPPEINLEGVESGILIDYPCMGSSGT TTNWEGPSW" mobile_element 2009543..2009603 /note="source:CACAO_M_S_E51240_F74_scaffold_4 2214 2277" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2012186..2014127) /locus_tag="TCM_042731" /note="dbxref CacaoGD:Thecc1EG042731" mRNA complement(2012186..2014127) /locus_tag="TCM_042731" /product="AT-hook protein of GA feedback 2" /inference="alignment:exonerate- protein:2:ricco:30143.m001173" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020823t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05890.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage" CDS complement(2013062..2014081) /locus_tag="TCM_042731" /note="paralog of Thecc1EG020823t1" /codon_start=1 /product="AT-hook protein of GA feedback 2" /protein_id="EOY18080.1" /db_xref="Phytozome:POPTR_0008s05890.1" /db_xref="TAIR:AT3G55560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2S3" /translation="MANRWWAGNVAMRGVDSIASTPSLHLRNPSEEDHRIALNRLGPR REHQDFRDNNASPPNANTSSPNAATPNQNQDDNEDSRDNMEPDDQTTAFETIEPGSSS ASRRPRGRPPGSKNKPKPPIVITKESPNSLRSHVLEITSGSDIAECIANFAQRRHRGV SVLSGSGIVTNVTLRQPAAPGGVITLHGRFEILSLSGAFLPAPSPPGATGLTVYLAGG QGQVVGGSVIGALIASGPVMVIAATFTNAVYERLPIEDENGGEEGGGGGGEGIGVQQQ VNHSNNNGGGGGGNSGSSQSQGLGHEQEGGSIPLYNLPPNLLPNGQMPPDVFWGPPPR PPPSY" mobile_element complement(2015468..2015545) /note="source:CACAO_M_E989_F369_scaffold_1 1285 1357" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2018201..2021399 /locus_tag="TCM_042732" /note="dbxref CacaoGD:Thecc1EG042732" mRNA join(2018201..2018363,2018449..2018568,2018914..2019009, 2019102..2019174,2020280..2020341,2020488..2020569, 2020966..2021026,2021117..2021399) /locus_tag="TCM_042732" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g34350.1" /inference="similar to AA sequence:Phytozome:Glyma11g34350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03397t00002; inference alignment:Newbler:10:TSA:cgbaL_g03397t00002" mRNA join(2018211..2018363,2018449..2018568,2018914..2019009, 2019102..2019174,2020280..2020341,2020488..2020569, 2020805..2020827) /locus_tag="TCM_042732" /product="Tetratricopeptide repeat-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g34350.1" /inference="similar to AA sequence:Phytozome:Glyma11g34350.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1254t1; inference alignment:Newbler:10:TSA:cgbaL_g03397t00002" mRNA join(2018228..2018363,2018449..2018568,2018914..2019009, 2019102..2019174,2020280..2020341,2020488..2020563, 2020966..2021026,2021117..2021386) /locus_tag="TCM_042732" /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g34350.1" /inference="similar to AA sequence:Phytozome:Glyma11g34350.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07205t00001; inference alignment:Newbler:10:TSA:cgbaL_g03397t00002" CDS join(2018238..2018363,2018449..2018568,2018914..2019009, 2019102..2019174,2020280..2020341,2020488..2020569, 2020966..2021026,2021117..2021168) /locus_tag="TCM_042732" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY18081.1" /db_xref="Phytozome:Glyma11g34350.1" /db_xref="TAIR:AT2G44920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT76" /translation="MALLCHCNNVSFSSKQFPLRKPPKSPLCFVKAHSFFNYPTPKVF EEKLEKVSFSLGESFSKASLLALVSASILFVDPALAFKGGGPYGAEVTRGQDLTGKDF SGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVAKA NLSNANLEGALTTGNTSFKGSNVTGADFTDVPLRDDQREYLCKIADGLNPTTGNATRD TLLCN" CDS join(2018238..2018363,2018449..2018568,2018914..2019009, 2019102..2019174,2020280..2020341,2020488..2020563, 2020966..2021026,2021117..2021168) /locus_tag="TCM_042732" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /protein_id="EOY18082.1" /db_xref="Phytozome:Glyma11g34350.1" /db_xref="TAIR:AT2G44920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT76" /translation="MALLCHCNNVSFSSKQFPLRKPPKSPLCFVKAHSFFNYPTPKVF EEKLEKVSFSLGESFSKASLLALVSASILFVDPALAFKGGGPYGAEVTRGQDLTGKDF SGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVAKA NLSNANLEGALTTGNTSFKGSNVTDFTDVPLRDDQREYLCKIADGLNPTTGNATRDTL LCN" CDS join(2018238..2018363,2018449..2018568,2018914..2019009, 2019102..2019174,2020280..2020341,2020488..2020569, 2020805..2020821) /locus_tag="TCM_042732" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 3" /protein_id="EOY18083.1" /db_xref="Phytozome:Glyma11g34350.1" /db_xref="TAIR:AT2G44920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22160" /translation="MALLCHCNNVSFSSKQFPLRKPPKSPLCFVKAHSFFNYPTPKVF EEKLEKVSFSLGESFSKASLLALVSASILFVDPALAFKGGGPYGAEVTRGQDLTGKDF SGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVAKA NLSNANLEGALTTGNTSFKGSNVTGAGIAPT" gene complement(2022047..2026701) /locus_tag="TCM_042733" /note="dbxref CacaoGD:Thecc1EG042733" mRNA complement(join(2022047..2022613,2022795..2023331, 2025045..2025081,2025393..2026488)) /locus_tag="TCM_042733" /product="Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021877t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05910.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8029t1; alternateUTRof:Thecc1EG042733t1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8029t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc360t2" mRNA complement(join(2022087..2022613,2022795..2023331, 2025393..2026701)) /locus_tag="TCM_042733" /product="Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021877t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05910.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8029t1" CDS complement(join(2022506..2022613,2022795..2023331, 2025393..2026226)) /locus_tag="TCM_042733" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021877t1" /codon_start=1 /product="Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe, putative isoform 1" /protein_id="EOY18084.1" /db_xref="Phytozome:POPTR_0008s05910.1" /db_xref="TAIR:AT3G11420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAY4" /translation="MSPRQDLLKTTAFFIYPEKPRDMLVLITRIALLICLFISIALVL YVSFSNRPYPFIRFTSLNRKMGSETPDNSPTNISHLLFGIGGSAKTWKERRAFSSLWW DVESTRGFFWLDEKPDETGTVNDFDAEAGVSLPYRISGPEWTRFKYSSSRYAVRIARI VYDSFNLKLPNVRWFVMGDDDTVFFTHNLVSVLARYDHRQMWYIGGNSESVEQNVMHA YDMAFGGGGFAVSYPLAEKLVKALDGCLERYYYFYGSDQRIWACISEIGVPLTREPGF HQFDIRGDPYGLLAAHPMAPLVSFHHLDGLVPMFPNKTRIDSLKTLMKGYRVDHGRIL QQSFCYDSKRKWSIVIAWGYTIQIYPRVVTASDLHMPLQTFKTWRSWSNGPFTFNTRP MPADPCEWPIIYFLDQVEVGMSGTRTRYKIAKSGKTCNRTDYGLAMAVNSITVSSMKM APDYWQKAPHRQCCEIMDRGSIKSGSMRIRIRNCRQSETTTI" CDS complement(join(2022506..2022613,2022795..2023331, 2025393..2026226)) /locus_tag="TCM_042733" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021877t1" /codon_start=1 /product="Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe, putative isoform 1" /protein_id="EOY18085.1" /db_xref="Phytozome:POPTR_0008s05910.1" /db_xref="TAIR:AT3G11420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAY4" /translation="MSPRQDLLKTTAFFIYPEKPRDMLVLITRIALLICLFISIALVL YVSFSNRPYPFIRFTSLNRKMGSETPDNSPTNISHLLFGIGGSAKTWKERRAFSSLWW DVESTRGFFWLDEKPDETGTVNDFDAEAGVSLPYRISGPEWTRFKYSSSRYAVRIARI VYDSFNLKLPNVRWFVMGDDDTVFFTHNLVSVLARYDHRQMWYIGGNSESVEQNVMHA YDMAFGGGGFAVSYPLAEKLVKALDGCLERYYYFYGSDQRIWACISEIGVPLTREPGF HQFDIRGDPYGLLAAHPMAPLVSFHHLDGLVPMFPNKTRIDSLKTLMKGYRVDHGRIL QQSFCYDSKRKWSIVIAWGYTIQIYPRVVTASDLHMPLQTFKTWRSWSNGPFTFNTRP MPADPCEWPIIYFLDQVEVGMSGTRTRYKIAKSGKTCNRTDYGLAMAVNSITVSSMKM APDYWQKAPHRQCCEIMDRGSIKSGSMRIRIRNCRQSETTTI" mobile_element complement(2027619..2028316) /note="source:scaffold_2_CACTA_0243 6532 7242" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2029413..2029503) /note="source:INTACT433_F212_scaffold_1-int 3050 3142" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2030054..2030116) /note="source:scaffold_3_CACTA_0384 765 826" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2030674..2030737 /note="source:scaffold_4_CACTA_0490 3095 3159" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2030687..2030750) /note="source:scaffold_1_CACTA_0011 7455 7518" /mobile_element_type="transposon:TIR/CACTA" gene 2032611..2033879 /locus_tag="TCM_042734" /note="dbxref CacaoGD:Thecc1EG042734" mRNA 2032611..2033879 /locus_tag="TCM_042734" /product="C2H2 and C2HC zinc fingers superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021875t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05930.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1227t1" CDS 2032842..2033717 /locus_tag="TCM_042734" /note="paralog of Thecc1EG021875t1" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein, putative" /protein_id="EOY18086.1" /db_xref="Phytozome:POPTR_0008s05930.1" /db_xref="TAIR:AT5G06070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HML0" /translation="MEQDQYWMWMRRRRILKSHFQVSMNSLSEYSWEEKAFAEDAAGS LGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQSALSSHNEVVVPHHQN HRKISPKSSDEPKILPHQAGPLDSTDDLDHNSTASTFSASRVSVLSTQENFSTTSPVQ EQHKGQLFGSDSTAKRSLNNIFLDSKPEAEKSIKLARGGDSVCLDSDDDHVETNLSVG LNPVFFQNRPTVITCGEEAISCKRPKIAVSTLPFIVSEETYSPLQWQVLGLKPAGSME DLDLELRLGVLPKVK" gene 2037000..2040923 /locus_tag="TCM_042735" /note="dbxref CacaoGD:Thecc1EG042735" mRNA join(2037000..2037202,2037354..2037561,2038786..2039002, 2039147..2039253,2040329..2040923) /locus_tag="TCM_042735" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05940.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041775t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05940.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11929t00001" CDS join(2037108..2037202,2037354..2037561,2038786..2039002, 2039147..2039253,2040329..2040523) /locus_tag="TCM_042735" /note="paralog of Thecc1EG041775t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY18087.1" /db_xref="Phytozome:POPTR_0008s05940.1" /db_xref="TAIR:AT5G06060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84JJ3" /translation="MAETASSSKIKTSRWSLNGMTALVTGGTRGIGHAIVEELAGLGA AVYTCSRNEAELNKCLKEWEGKGFLVSGSVCDASSKDQRQKLVENVASLFNGRLNILV NNVGTNIRKPTIEYSAEEYSKLITTNFESSYHLCQLAHPLLKASQVGSIVFISSVAGV MHIGSGSIYGPTKAAINQLTKNLACEWAKDNIRTNCVAPWYIRTSLVEHLLEKKELLE KIITRTPLQRVGEPEEVSSIVAFLCLPASSYITGQVISVDGGLTVNALNPGMRLD" mobile_element 2041524..2041643 /note="source:scaffold_7_CACTA_0795 2905 3027" /mobile_element_type="transposon:TIR/CACTA" gene 2043964..2046272 /locus_tag="TCM_042736" /note="dbxref CacaoGD:Thecc1EG042736" mRNA join(2043964..2044983,2045080..2045400,2045490..2046272) /locus_tag="TCM_042736" /product="Phosphatase PP2C isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041761t2" /inference="similar to AA sequence:Phytozome:POPTR_0010s20720.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b041263t1a2; inference alignment:Newbler:10:TSA:cgbaB_g08089t00001" mRNA join(2043964..2044983,2045080..2045400,2045490..2045595, 2045681..2046272) /locus_tag="TCM_042736" /product="Phosphatase PP2C isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041761t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20720.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08089t00001" CDS join(2044519..2044983,2045080..2045400,2045490..2045595, 2045681..2046027) /locus_tag="TCM_042736" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041761t1" /codon_start=1 /product="Phosphatase PP2C isoform 1" /protein_id="EOY18088.1" /db_xref="Phytozome:POPTR_0010s20720.1" /db_xref="TAIR:AT3G11410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7P003" /translation="MAGICCGVVGESEAATPVETTSRASRRRRMELRPFKLVADAAVQ SPLENGRKRQKIELDLLLPSSPRDCNNAVQNSDAKKLNGVNCNGTVKLESENSVEEEK VWPKFGMTSVCGRRRDMEDAVSIHPSFCKQSYQVQISSDIHFFGVFDGHGCSHVAMKC RDRFHEIVKEEIESWGEKAVEWKQTMERSFERMDKEVQDWTVDAKESSSCRCELQTPQ CDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGSAIPLSCDHKPDRPDELLRIQEAG GRVIYWDGPRVLGVLAMSRAIGDNYLKPFVIPDPEVTITERKCEDECLILASDGLWDV VTNDTACGVARMCLRAQKPPSPPGSPGSDAAVRGGAAESSDKACGDASILLTKLALAR HSTDNVSVVVVDLKKNQQPQ" CDS join(2044519..2044983,2045080..2045400,2045490..2045600) /locus_tag="TCM_042736" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041761t2" /codon_start=1 /product="Phosphatase PP2C isoform 2" /protein_id="EOY18089.1" /db_xref="Phytozome:POPTR_0010s20720.1" /db_xref="TAIR:AT3G11410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7P003" /translation="MAGICCGVVGESEAATPVETTSRASRRRRMELRPFKLVADAAVQ SPLENGRKRQKIELDLLLPSSPRDCNNAVQNSDAKKLNGVNCNGTVKLESENSVEEEK VWPKFGMTSVCGRRRDMEDAVSIHPSFCKQSYQVQISSDIHFFGVFDGHGCSHVAMKC RDRFHEIVKEEIESWGEKAVEWKQTMERSFERMDKEVQDWTVDAKESSSCRCELQTPQ CDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGSAIPLSCDHKPDRPDELLRIQEAG GRVIYWDGPRVLGVLAMSRAIG" gene 2050476..2055310 /locus_tag="TCM_042737" /note="dbxref CacaoGD:Thecc1EG042737" mRNA join(2050476..2050780,2050916..2051012,2051497..2051661, 2052532..2052696,2052909..2053087,2053170..2053265, 2053658..2053727,2053997..2054121,2054272..2054382, 2054457..2055310) /locus_tag="TCM_042737" /product="Zinc finger protein, putative" /inference="alignment:exonerate- protein:2:ricco:30143.m001180" /inference="similar to AA sequence:ricco:30143.m001180" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc221t9" CDS join(2051523..2051661,2052532..2052696,2052909..2053087, 2053170..2053265,2053658..2053727,2053997..2054121, 2054272..2054382,2054457..2055020) /locus_tag="TCM_042737" /note="dbxref ricco:30143.m001180" /codon_start=1 /product="Zinc finger protein, putative" /protein_id="EOY18090.1" /db_xref="TAIR:AT2G39740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDZ7" /translation="MNSYSQVESTLQEVLEVIKPLREDWVTRQKIIDELREVVQSMES LRGATVEPFGSLVSNLFTRWGDLDISIELPYGSYVSSAGKKRKQTLLGELQRALKQKD GWQRLQFIPHARVPILKIESRWQNISCDISIDNLQGQIKSKFLFWLNEIDGRFREMVL LVKEWASANGINNPKAGTFNSYSLTLLVIFHFQTCAPAIFPPLKDIYPRNVVTDLTGV RADAERRIAQVCSSNIARFRSGRTVNRSSLSELFISFIAKFSDINSKASDMGICTFTG QWEYITSNMRWLPRTYAIFVEDPFEQPENASRAVSQKQLIKIAEAFETTRCMLISANL TQSTLLPTLVGPKTSRFIVKQQSVSSSSYNGGHYPNTRPQVHRAVHSPLLMQQHQYRN SRPAASQMQQHQAQMVMPSPSRVQPQFPKTRVESRPRPAHQYQKSTPSVSQVQPQFLR ARPESFSGSFATQRPVQLKHNQGQMWRPKSDK" gene complement(2054270..2060741) /locus_tag="TCM_042738" /note="dbxref CacaoGD:Thecc1EG042738" mRNA complement(join(2054270..2055523,2055643..2055912, 2056242..2056319,2056876..2057133,2057833..2057992, 2058210..2058320,2058722..2058992,2059088..2059237, 2059874..2060741)) /locus_tag="TCM_042738" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:TAIR:AT2G39750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035223t1" /inference="similar to AA sequence:TAIR:AT2G39750.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b041265t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc224t21" mRNA complement(join(2054270..2055912,2056242..2056319, 2056666..2056788,2056876..2057133,2057833..2057992, 2058210..2058320,2058722..2058992,2059088..2059237, 2059874..2060741)) /locus_tag="TCM_042738" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT2G39750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035223t1" /inference="similar to AA sequence:TAIR:AT2G39750.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b041265t1a3; alternateUTRof:Thecc1EG042738t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc224t21" mRNA complement(join(2054457..2055523,2055643..2055912, 2056242..2056319,2056666..2056788,2056876..2057133, 2057833..2057992,2058210..2058320,2058722..2058992, 2059088..2059237,2059874..2060571)) /locus_tag="TCM_042738" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT2G39750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035223t1" /inference="similar to AA sequence:TAIR:AT2G39750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7961t10; alternateUTRof:Thecc1EG042738t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc224t21" mRNA complement(join(2055127..2055912,2056242..2056319, 2056666..2056788,2056876..2057133,2057833..2057992, 2058210..2058320,2058722..2058992,2059088..2059237, 2059874..2060741)) /locus_tag="TCM_042738" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT2G39750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035223t1" /inference="similar to AA sequence:TAIR:AT2G39750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc224t21" mRNA complement(join(2055469..2055912,2056242..2056319, 2056666..2056788,2056876..2057133,2057833..2057992, 2058210..2058320,2058722..2058992,2059088..2059237, 2059874..2060571)) /locus_tag="TCM_042738" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT2G39750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035223t1" /inference="similar to AA sequence:TAIR:AT2G39750.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc222t15; alternateUTRof:Thecc1EG042738t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc224t21" CDS complement(join(2055705..2055912,2056242..2056319, 2056876..2057133,2057833..2057992,2058210..2058320, 2058722..2058992,2059088..2059237,2059874..2060563)) /locus_tag="TCM_042738" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG035223t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 5" /protein_id="EOY18095.1" /db_xref="TAIR:AT2G39750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22285" /translation="MKLLGNVDFLKSPTAIKFSAFIFISVSFFYLGKHWSDGSRQLIF FSRQSPTKTTPSLASVAYSPNLNKEFNISALINTTEPETGPKPAGSVNSKENSVSVSE PAAPPPPDRIKSYGIVDENGTMSDEFEIGEFDPDLVENWGNGTEIEAETEKEDVRVTF RVKKFGLCKENMREYIPCLDNVEAIRRLKSTERGERFERHCPEKGKGLNCLVPAPKGY KPPIPWPRSRDEVWFSNVPHTRLVDDKGGQNWIARGKDKFKFPGGGTQFIHGADQYLD QISKMVPEITFGNHIRVVLDVGCGVASFGAYLLSRNVITMSIAPKDVHENQIQFALER GVPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA QPVYKHEEALEQQWKEMLNLTTNLCWNLVKKEGYIAIWQKPFKNSCYLSREAGTSPPL CDPDDDPDNVWYVDLKACISRLPENGYGANVVPWPARLQMPPDRLQSIQIDSYIARKE LFKAESKYWNEIVASYVRALHWKKFKLRNVLDMRAGFGGCEPFDTYPRTYDFLHAAGL FSIERKRCNMSTIMLEMDRILRPGGRVYIRDSLDVMDELQDIAKAMGWHPSLRDTSEG PHASYRILTCDKRLLRG" CDS complement(join(2055705..2055912,2056242..2056319, 2056666..2056788,2056876..2057133,2057833..2057992, 2058210..2058320,2058722..2058992,2059088..2059237, 2059874..2060563)) /locus_tag="TCM_042738" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG035223t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY18091.1" /db_xref="TAIR:AT2G39750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22285" /translation="MKLLGNVDFLKSPTAIKFSAFIFISVSFFYLGKHWSDGSRQLIF FSRQSPTKTTPSLASVAYSPNLNKEFNISALINTTEPETGPKPAGSVNSKENSVSVSE PAAPPPPDRIKSYGIVDENGTMSDEFEIGEFDPDLVENWGNGTEIEAETEKEDVRVTF RVKKFGLCKENMREYIPCLDNVEAIRRLKSTERGERFERHCPEKGKGLNCLVPAPKGY KPPIPWPRSRDEVWFSNVPHTRLVDDKGGQNWIARGKDKFKFPGGGTQFIHGADQYLD QISKMVPEITFGNHIRVVLDVGCGVASFGAYLLSRNVITMSIAPKDVHENQIQFALER GVPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA QPVYKHEEALEQQWKEMLNLTTNLCWNLVKKEGYIAIWQKPFKNSCYLSREAGTSPPL CDPDDDPDNVWYVDLKACISRLPENGYGANVVPWPARLQMPPDRLQSIQIDSYIARKE LFKAESKYWNEIVASYVRALHWKKFKLRNVLDMRAGFGGFAAALIDNQLDAWVLNVVP VSGPNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDFLHAAGLFSIERKRCNMSTIMLEM DRILRPGGRVYIRDSLDVMDELQDIAKAMGWHPSLRDTSEGPHASYRILTCDKRLLRG " CDS complement(join(2055705..2055912,2056242..2056319, 2056666..2056788,2056876..2057133,2057833..2057992, 2058210..2058320,2058722..2058992,2059088..2059237, 2059874..2060563)) /locus_tag="TCM_042738" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG035223t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY18092.1" /db_xref="TAIR:AT2G39750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22285" /translation="MKLLGNVDFLKSPTAIKFSAFIFISVSFFYLGKHWSDGSRQLIF FSRQSPTKTTPSLASVAYSPNLNKEFNISALINTTEPETGPKPAGSVNSKENSVSVSE PAAPPPPDRIKSYGIVDENGTMSDEFEIGEFDPDLVENWGNGTEIEAETEKEDVRVTF RVKKFGLCKENMREYIPCLDNVEAIRRLKSTERGERFERHCPEKGKGLNCLVPAPKGY KPPIPWPRSRDEVWFSNVPHTRLVDDKGGQNWIARGKDKFKFPGGGTQFIHGADQYLD QISKMVPEITFGNHIRVVLDVGCGVASFGAYLLSRNVITMSIAPKDVHENQIQFALER GVPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA QPVYKHEEALEQQWKEMLNLTTNLCWNLVKKEGYIAIWQKPFKNSCYLSREAGTSPPL CDPDDDPDNVWYVDLKACISRLPENGYGANVVPWPARLQMPPDRLQSIQIDSYIARKE LFKAESKYWNEIVASYVRALHWKKFKLRNVLDMRAGFGGFAAALIDNQLDAWVLNVVP VSGPNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDFLHAAGLFSIERKRCNMSTIMLEM DRILRPGGRVYIRDSLDVMDELQDIAKAMGWHPSLRDTSEGPHASYRILTCDKRLLRG " CDS complement(join(2055705..2055912,2056242..2056319, 2056666..2056788,2056876..2057133,2057833..2057992, 2058210..2058320,2058722..2058992,2059088..2059237, 2059874..2060563)) /locus_tag="TCM_042738" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG035223t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY18093.1" /db_xref="TAIR:AT2G39750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22285" /translation="MKLLGNVDFLKSPTAIKFSAFIFISVSFFYLGKHWSDGSRQLIF FSRQSPTKTTPSLASVAYSPNLNKEFNISALINTTEPETGPKPAGSVNSKENSVSVSE PAAPPPPDRIKSYGIVDENGTMSDEFEIGEFDPDLVENWGNGTEIEAETEKEDVRVTF RVKKFGLCKENMREYIPCLDNVEAIRRLKSTERGERFERHCPEKGKGLNCLVPAPKGY KPPIPWPRSRDEVWFSNVPHTRLVDDKGGQNWIARGKDKFKFPGGGTQFIHGADQYLD QISKMVPEITFGNHIRVVLDVGCGVASFGAYLLSRNVITMSIAPKDVHENQIQFALER GVPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA QPVYKHEEALEQQWKEMLNLTTNLCWNLVKKEGYIAIWQKPFKNSCYLSREAGTSPPL CDPDDDPDNVWYVDLKACISRLPENGYGANVVPWPARLQMPPDRLQSIQIDSYIARKE LFKAESKYWNEIVASYVRALHWKKFKLRNVLDMRAGFGGFAAALIDNQLDAWVLNVVP VSGPNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDFLHAAGLFSIERKRCNMSTIMLEM DRILRPGGRVYIRDSLDVMDELQDIAKAMGWHPSLRDTSEGPHASYRILTCDKRLLRG " CDS complement(join(2055705..2055912,2056242..2056319, 2056666..2056788,2056876..2057133,2057833..2057992, 2058210..2058320,2058722..2058992,2059088..2059237, 2059874..2060563)) /locus_tag="TCM_042738" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG035223t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY18094.1" /db_xref="TAIR:AT2G39750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22285" /translation="MKLLGNVDFLKSPTAIKFSAFIFISVSFFYLGKHWSDGSRQLIF FSRQSPTKTTPSLASVAYSPNLNKEFNISALINTTEPETGPKPAGSVNSKENSVSVSE PAAPPPPDRIKSYGIVDENGTMSDEFEIGEFDPDLVENWGNGTEIEAETEKEDVRVTF RVKKFGLCKENMREYIPCLDNVEAIRRLKSTERGERFERHCPEKGKGLNCLVPAPKGY KPPIPWPRSRDEVWFSNVPHTRLVDDKGGQNWIARGKDKFKFPGGGTQFIHGADQYLD QISKMVPEITFGNHIRVVLDVGCGVASFGAYLLSRNVITMSIAPKDVHENQIQFALER GVPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA QPVYKHEEALEQQWKEMLNLTTNLCWNLVKKEGYIAIWQKPFKNSCYLSREAGTSPPL CDPDDDPDNVWYVDLKACISRLPENGYGANVVPWPARLQMPPDRLQSIQIDSYIARKE LFKAESKYWNEIVASYVRALHWKKFKLRNVLDMRAGFGGFAAALIDNQLDAWVLNVVP VSGPNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDFLHAAGLFSIERKRCNMSTIMLEM DRILRPGGRVYIRDSLDVMDELQDIAKAMGWHPSLRDTSEGPHASYRILTCDKRLLRG " mRNA complement(join(2056291..2056788,2056876..2057133, 2057833..2057992,2058210..2058320,2058722..2058992, 2059088..2059237,2059874..2060571)) /locus_tag="TCM_042738" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 6" /inference="alignment:exonerate- protein:2:TAIR:AT2G39750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035223t1" /inference="similar to AA sequence:ricco:30143.m001181" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc224t18; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc224t21" CDS complement(join(2056572..2056788,2056876..2057133, 2057833..2057992,2058210..2058320,2058722..2058992, 2059088..2059237,2059874..2060563)) /locus_tag="TCM_042738" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30143.m001181; paralog of Thecc1EG035223t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 6" /protein_id="EOY18096.1" /db_xref="TAIR:AT2G39750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22285" /translation="MKLLGNVDFLKSPTAIKFSAFIFISVSFFYLGKHWSDGSRQLIF FSRQSPTKTTPSLASVAYSPNLNKEFNISALINTTEPETGPKPAGSVNSKENSVSVSE PAAPPPPDRIKSYGIVDENGTMSDEFEIGEFDPDLVENWGNGTEIEAETEKEDVRVTF RVKKFGLCKENMREYIPCLDNVEAIRRLKSTERGERFERHCPEKGKGLNCLVPAPKGY KPPIPWPRSRDEVWFSNVPHTRLVDDKGGQNWIARGKDKFKFPGGGTQFIHGADQYLD QISKMVPEITFGNHIRVVLDVGCGVASFGAYLLSRNVITMSIAPKDVHENQIQFALER GVPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA QPVYKHEEALEQQWKEMLNLTTNLCWNLVKKEGYIAIWQKPFKNSCYLSREAGTSPPL CDPDDDPDNVWYVDLKACISRLPENGYGANVVPWPARLQMPPDRLQSIQIDSYIARKE LFKAESKYWNEIVASYVRALHWKKFKLRNVLDMRAGFGGFAAALIDNQLDAWVLNVVP VSGPNTLPVIYDRGLIGVMHDWYFFFTIIPIRKFCTVDRIGVQMAVLFIDDF" mobile_element complement(2061276..2061344) /note="source:scaffold_5_CACTA_0580 5411 5479" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2062213..2062346 /note="source:scaffold_3_CACTA_0377 2101 2229" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2062223..2062333) /note="source:scaffold_10_CACTA_0137 6895 7008" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2062773..2062929 /note="source:CACAO_PIF_E119_scaffold_3 4515 4684" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2063116..2063261 /note="source:scaffold_4_CACTA_0506 6910 7049" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2063155..2063279 /note="source:CACAO_PIF_E54_scaffold_3 8982 9110" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2063823..2064065) /note="source:scaffold_8_CACTA_0858 14558 14724" /mobile_element_type="transposon:TIR/CACTA" gene 2064006..2068601 /locus_tag="TCM_042739" /note="dbxref CacaoGD:Thecc1EG042739" mRNA join(2064006..2064877,2065642..2065990,2066252..2066528, 2067576..2067799,2068295..2068601) /locus_tag="TCM_042739" /product="BTB/POZ/MATH-domains containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30143.m001182" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004456t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20670.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03314t00001" mRNA join(2064006..2064877,2065642..2065990,2066252..2066873) /locus_tag="TCM_042739" /product="BTB/POZ/MATH-domains containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30143.m001182" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004456t1" /inference="similar to AA sequence:ricco:30143.m001182" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b041266t1a2; inference alignment:Newbler:10:TSA:cgbaL_g03314t00001" CDS join(2064510..2064877,2065642..2065990,2066252..2066528, 2067576..2067790) /locus_tag="TCM_042739" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004456t1" /codon_start=1 /product="BTB/POZ/MATH-domains containing protein isoform 1" /protein_id="EOY18097.1" /db_xref="Phytozome:POPTR_0010s20670.1" /db_xref="TAIR:AT2G39760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9FV33" /translation="MDDFKDSVSKSVSETVNGSHQFTIKGYSLAKGMGPGKCIASDVF TVGGFDWVIYFYPDGKNPEDSAMYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVH SHFDRALESGPYTLKYRGSMWGYKRFFRRTTLETSDYIKDDCLIMNCTVGVVRTRLEG PKQCSISVPPSEMGQNLKALLESEVGCDIIFQVVDEKFKAHKLILAARSPVFRAQFFG LVGDPNMDKVVVEDFEPSIFKAMLLFIYTDKLPDVQEITGSTSMCMSTNMVQHLLAAA DLYNLDRLKVLCEAKLCEELNADTVATTLALAEQHHCAQLKAICLKFAATPANLGAVM QSEGFRHLEECCPSLLSELLKTFASGEESLSQLSSRKRSGSSVYGMDLAAEGPVAESV NPNGRRVRRR" CDS join(2064510..2064877,2065642..2065990,2066252..2066542) /locus_tag="TCM_042739" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30143.m001182; paralog of Thecc1EG004456t1" /codon_start=1 /product="BTB/POZ/MATH-domains containing protein isoform 2" /protein_id="EOY18098.1" /db_xref="TAIR:AT2G39760.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9FV33" /translation="MDDFKDSVSKSVSETVNGSHQFTIKGYSLAKGMGPGKCIASDVF TVGGFDWVIYFYPDGKNPEDSAMYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVH SHFDRALESGPYTLKYRGSMWGYKRFFRRTTLETSDYIKDDCLIMNCTVGVVRTRLEG PKQCSISVPPSEMGQNLKALLESEVGCDIIFQVVDEKFKAHKLILAARSPVFRAQFFG LVGDPNMDKVVVEDFEPSIFKAMLLFIYTDKLPDVQEITGSTSMCMSTNMVQHLLAAA DLYNLDRLKVLCEAKLCEELNADTVATTLALAEQHHCAQLKAICLKFAATPANLGGAC S" mobile_element complement(2065508..2065561) /note="source:scaffold_3_CACTA_0388 9617 9668" /mobile_element_type="transposon:TIR/CACTA" gene complement(2068657..2069551) /locus_tag="TCM_042740" /note="dbxref CacaoGD:Thecc1EG042740" mRNA complement(2068657..2069551) /locus_tag="TCM_042740" /product="Cytoplasmic tRNA 2-thiolation protein 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g41780.1" /inference="similar to AA sequence:frave:gene34451" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(2068718..2068954) /locus_tag="TCM_042740" /note="dbxref frave:gene34451" /codon_start=1 /product="Cytoplasmic tRNA 2-thiolation protein 1" /protein_id="EOY18099.1" /translation="MESEKQNGVSFFQMPLHYPRYTQKDYQDMPEWKLDRLLAEYGLS NKGDLAYKRQFAMGAFLWPDFHGHQSPSTYISYK" gene 2073170..2079240 /locus_tag="TCM_042741" /note="dbxref CacaoGD:Thecc1EG042741" mRNA join(2073170..2073492,2074053..2074126,2074238..2074322, 2074660..2074791,2074876..2075112,2075282..2075521, 2076285..2076328,2077310..2077492,2077836..2077926, 2078008..2078051,2078328..2078490,2078863..2079215) /locus_tag="TCM_042741" /product="Regulator of chromosome condensation repeat-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021873t1" /inference="similar to AA sequence:ricco:30143.m001185" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1308t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1308t5" mRNA join(2073170..2073492,2074053..2074126,2074238..2074322, 2074660..2074791,2074876..2075112,2075282..2075521, 2076285..2076328,2077310..2077492,2077836..2077926, 2078008..2078051,2078328..2078490,2078854..2079203) /locus_tag="TCM_042741" /product="Regulator of chromosome condensation repeat-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021873t1" /inference="similar to AA sequence:ricco:30143.m001185" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00049t00017; alternateUTRof:Thecc1EG042741t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1308t5; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9069t1" mRNA join(2073170..2073492,2074053..2074126,2074238..2074322, 2074660..2074791,2074876..2075112,2075282..2075521, 2076285..2076328,2077310..2077492,2077836..2077926, 2078328..2078490,2078854..2079203) /locus_tag="TCM_042741" /product="Regulator of chromosome condensation repeat-containing protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021873t1" /inference="similar to AA sequence:ricco:30143.m001185" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00049t00018; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1308t5; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9069t1" mRNA join(2073171..2073492,2074053..2074126,2074238..2074322, 2074660..2074791,2074876..2075112,2075282..2075521, 2076285..2076328,2077310..2077492,2077836..2077926, 2078008..2078051,2078328..2078490,2078885..2079240) /locus_tag="TCM_042741" /product="Regulator of chromosome condensation repeat-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021873t1" /inference="similar to AA sequence:ricco:30143.m001185" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc12t11; alternateUTRof:Thecc1EG042741t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1308t5; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9069t1" CDS join(2073285..2073492,2074053..2074126,2074238..2074322, 2074660..2074791,2074876..2075112,2075282..2075521, 2076285..2076328,2077310..2077492,2077836..2077926, 2078008..2078051,2078328..2078450) /locus_tag="TCM_042741" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30143.m001185; paralog of Thecc1EG021873t1" /codon_start=1 /product="Regulator of chromosome condensation repeat-containing protein isoform 1" /protein_id="EOY18100.1" /db_xref="TAIR:AT3G55580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2S1" /translation="MNGEGKESEEVKMEEVNRERLVFMWGYLPGALPQRTPLLSPVVV RIPASVGCSWTDVCGGGCGFAMAISDSGKLITWGSTDDLGQSYVTSGKHGETPEPFPL PTEASVVKAAAGWAHCVAVTENGEVYTWGWKECIPSGKVFGDPSMGTSLEKDVFERQN SFLTEQVSPRSQGSRSSGGTFSAADGKGGGEESTKRRRISSAKQATESSSSGDETLSA LPCLVTLNPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPV TCIEPSSYGKDRAAALSRGSMSAEGQSFRIPGSYVKAIACGGRHSAVITDAGALLTFG WGLYGQCGQGSTDDELSPTCVSSLLGITIEAVAAGLWHTVCISADGDVYAFGGNQFGQ LGTGGDQAETLPRLLDAPSLENTHAKVVSCGARHSAVITEDGKVFCWGWNKYGQLGLG DVIDRNIPSQVTIDGCGPKNIACGWWHTLLLADSPT" CDS join(2073285..2073492,2074053..2074126,2074238..2074322, 2074660..2074791,2074876..2075112,2075282..2075521, 2076285..2076328,2077310..2077492,2077836..2077926, 2078008..2078051,2078328..2078450) /locus_tag="TCM_042741" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30143.m001185; paralog of Thecc1EG021873t1" /codon_start=1 /product="Regulator of chromosome condensation repeat-containing protein isoform 1" /protein_id="EOY18101.1" /db_xref="TAIR:AT3G55580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2S1" /translation="MNGEGKESEEVKMEEVNRERLVFMWGYLPGALPQRTPLLSPVVV RIPASVGCSWTDVCGGGCGFAMAISDSGKLITWGSTDDLGQSYVTSGKHGETPEPFPL PTEASVVKAAAGWAHCVAVTENGEVYTWGWKECIPSGKVFGDPSMGTSLEKDVFERQN SFLTEQVSPRSQGSRSSGGTFSAADGKGGGEESTKRRRISSAKQATESSSSGDETLSA LPCLVTLNPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPV TCIEPSSYGKDRAAALSRGSMSAEGQSFRIPGSYVKAIACGGRHSAVITDAGALLTFG WGLYGQCGQGSTDDELSPTCVSSLLGITIEAVAAGLWHTVCISADGDVYAFGGNQFGQ LGTGGDQAETLPRLLDAPSLENTHAKVVSCGARHSAVITEDGKVFCWGWNKYGQLGLG DVIDRNIPSQVTIDGCGPKNIACGWWHTLLLADSPT" CDS join(2073285..2073492,2074053..2074126,2074238..2074322, 2074660..2074791,2074876..2075112,2075282..2075521, 2076285..2076328,2077310..2077492,2077836..2077926, 2078008..2078051,2078328..2078450) /locus_tag="TCM_042741" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30143.m001185; paralog of Thecc1EG021873t1" /codon_start=1 /product="Regulator of chromosome condensation repeat-containing protein isoform 1" /protein_id="EOY18102.1" /db_xref="TAIR:AT3G55580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2S1" /translation="MNGEGKESEEVKMEEVNRERLVFMWGYLPGALPQRTPLLSPVVV RIPASVGCSWTDVCGGGCGFAMAISDSGKLITWGSTDDLGQSYVTSGKHGETPEPFPL PTEASVVKAAAGWAHCVAVTENGEVYTWGWKECIPSGKVFGDPSMGTSLEKDVFERQN SFLTEQVSPRSQGSRSSGGTFSAADGKGGGEESTKRRRISSAKQATESSSSGDETLSA LPCLVTLNPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPV TCIEPSSYGKDRAAALSRGSMSAEGQSFRIPGSYVKAIACGGRHSAVITDAGALLTFG WGLYGQCGQGSTDDELSPTCVSSLLGITIEAVAAGLWHTVCISADGDVYAFGGNQFGQ LGTGGDQAETLPRLLDAPSLENTHAKVVSCGARHSAVITEDGKVFCWGWNKYGQLGLG DVIDRNIPSQVTIDGCGPKNIACGWWHTLLLADSPT" CDS join(2073285..2073492,2074053..2074126,2074238..2074322, 2074660..2074791,2074876..2075112,2075282..2075521, 2076285..2076328,2077310..2077492,2077836..2077926, 2078328..2078341) /locus_tag="TCM_042741" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30143.m001185; paralog of Thecc1EG021873t1" /codon_start=1 /product="Regulator of chromosome condensation repeat-containing protein isoform 4" /protein_id="EOY18103.1" /db_xref="TAIR:AT3G55580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2S1" /translation="MNGEGKESEEVKMEEVNRERLVFMWGYLPGALPQRTPLLSPVVV RIPASVGCSWTDVCGGGCGFAMAISDSGKLITWGSTDDLGQSYVTSGKHGETPEPFPL PTEASVVKAAAGWAHCVAVTENGEVYTWGWKECIPSGKVFGDPSMGTSLEKDVFERQN SFLTEQVSPRSQGSRSSGGTFSAADGKGGGEESTKRRRISSAKQATESSSSGDETLSA LPCLVTLNPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPV TCIEPSSYGKDRAAALSRGSMSAEGQSFRIPGSYVKAIACGGRHSAVITDAGALLTFG WGLYGQCGQGSTDDELSPTCVSSLLGITIEAVAAGLWHTVCISADGDVYAFGGNQFGQ LGTGGDQAETLPRLLDAPSLENTHAKVVSCGARHSAVITARPG" gene 2080526..2084354 /locus_tag="TCM_042743" /note="dbxref CacaoGD:Thecc1EG042743" mRNA join(2080526..2081740,2081833..2081892,2083089..2084354) /locus_tag="TCM_042743" /product="Kinase, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016473001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021866t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016473001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1280t1" CDS join(2080969..2081740,2081833..2081892,2083089..2084152) /locus_tag="TCM_042743" /note="paralog of Thecc1EG021866t1" /codon_start=1 /product="Kinase, putative" /protein_id="EOY18104.1" /db_xref="Phytozome:GSVIVT01016473001" /db_xref="TAIR:AT5G02070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SE04" /translation="MAATLKLLSTALLLLTCAVGVALSAQRCPNCGSTTVPYPLSTGP ACGDQSYKIRCDAGSLIFDTLNNSYPIMSVNHFNQRLVIEPASLLPNTCVTTDLPFEG VQLNSTLPFNVTSSNTIMFLNCTDSVLRSPLDCSSTGLCHVYVNDSSNATACEVAPIC CTFRAGGGATAHAIRVRESGCRAYTSFVSLDAGLPVNQWPQPGMELQWISPPEPVCSA QADCDGNSTCGPDPNSNGIQRCFCNSGLWWDPIEGICAENSTCQNPGGCGGSDRTALI AGLTAGLGTALFAAIIGMLVYKRHRRIIDAQERLRKEREEILNANNAGRAAKVFTGKE IKKATNNFSRDRILGAGGYGDVYKGILDDGTVVAVKCAKLGNAKGTDQVLNEVRILCQ VNHRSLVRLLGCCVELEQPILVYEYIENGNLLDHLQSLSHGERGLLTWTRRLQIACDT ADGLAYLHSSAVPPIYHRDVKSSNILLDVNLNAKVSDFGLSRLAHTDMSHVSTCAQGT LGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNRDPDDVNLAVYVKRMADE EKLVDVIDPMLREKSSPIEVDTMKALGFLALNCLEERRQNRPSMKEVTEEIEYIICIA NGKVVET" gene 2084407..2084712 /locus_tag="TCM_042744" /note="dbxref CacaoGD:Thecc1EG042744" mRNA 2084407..2084712 /locus_tag="TCM_042744" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029078t1" /inference="similar to AA sequence:ricco:29706.m001328" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage" CDS 2084463..2084657 /locus_tag="TCM_042744" /note="dbxref ricco:29706.m001328; paralog of Thecc1EG029078t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18105.1" /translation="MGNQKQIWTAEEEETLLAGVAKHSPGKWKNILEDPDFAPHLPRR SNIDLKDKWRNLSVSTSGQG" mobile_element 2084790..2085002 /note="source:CACAO_on_E2_scaffold_1 405 619" /mobile_element_type="transposon:TIR/hAT" mobile_element 2085200..2085285 /note="source:CACAO_on_E2_scaffold_1 1023 1105" /mobile_element_type="transposon:TIR/hAT" gene 2085285..2085923 /locus_tag="TCM_042745" /note="dbxref CacaoGD:Thecc1EG042745" mRNA 2085285..2085923 /locus_tag="TCM_042745" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.69 coverage" CDS 2085478..2085690 /locus_tag="TCM_042745" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18106.1" /translation="MASKNGLLSSFSHSLYTNKCNWIFSVTIDNLNFIILQILLQELH IHIQQLAKFCLNSSTLIKLQNLPFLR" gene 2087290..2087917 /locus_tag="TCM_042746" /note="dbxref CacaoGD:Thecc1EG042746" mRNA join(2087290..2087349,2087766..2087917) /locus_tag="TCM_042746" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc323t8" CDS join(2087323..2087349,2087766..2087894) /locus_tag="TCM_042746" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18107.1" /translation="MLVRFNTSVPKPKEGDVGGILTIHTSKYIKAYNSLIAHLQIQKQ NKIKIFQ" gene complement(2088332..2094742) /locus_tag="TCM_042747" /note="dbxref CacaoGD:Thecc1EG042747" mRNA complement(join(2088332..2088753,2090245..2090461, 2091261..2091548,2091655..2091744,2092305..2092486, 2092780..2093677)) /locus_tag="TCM_042747" /product="XH/XS domain-containing protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:27383.m000163" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027414t1" /inference="similar to AA sequence:ricco:27383.m000163" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7650t2_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7650t8_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1330t3" mRNA complement(join(2088355..2088751,2089103..2089361, 2090246..2090461,2091261..2091542,2091655..2091744, 2092305..2092486,2092780..2093700,2094628..2094742)) /locus_tag="TCM_042747" /product="XH/XS domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:27383.m000163" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027414t1" /inference="similar to AA sequence:ricco:27383.m000163" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b041274t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1330t3" mRNA complement(join(2088355..2088751,2089103..2089361, 2090246..2090461,2091261..2091548,2091655..2091744, 2092305..2092486,2092780..2093700,2094628..2094710)) /locus_tag="TCM_042747" /product="XH/XS domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:27383.m000163" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027414t1" /inference="similar to AA sequence:ricco:27383.m000163" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1330t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1330t3" mRNA complement(join(2088355..2088751,2089123..2089361, 2090245..2090461,2091261..2091548,2091655..2091744, 2092305..2092486,2092780..2093700,2094628..2094710)) /locus_tag="TCM_042747" /product="XH/XS domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:27383.m000163" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027414t1" /inference="similar to AA sequence:ricco:27383.m000163" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1330t1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7650t8_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1330t3" CDS complement(join(2088710..2088753,2090245..2090461, 2091261..2091548,2091655..2091744,2092305..2092486, 2092780..2093644)) /locus_tag="TCM_042747" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:27383.m000163; paralog of Thecc1EG027414t1" /codon_start=1 /product="XH/XS domain-containing protein isoform 5" /protein_id="EOY18112.1" /db_xref="TAIR:AT3G48670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTH7" /translation="MEEYEDKSYEKLKNGKHNIKVSEETYTCPYCPKKKKRDYLYKEL LQHASGVGNSNSEKRSAKEKANHLALVKYLEKDLVAVGSSSKTAAEEDPLSGYDHDEK IVWPWTGIVVNIPTRRSEDGRSVGESGSKLRDELIRRGFNPIRVLPLWNYRGHSGTAV VEFHKDWPGLHNALSFEKAYQADHHGKKEWCANNDVKFGLYAWVARADDYKSSGIIGE NLRKTSDLKTISGIMEEEARKQDKLVSNLTNIIETKNKHIKEMEARCSETSKSLEVLM DEKDNLLQAYNEEIKKIQLSAREHFLRIFNDHEKLKSQLESHKRDLELRGVELEKREA LNESERKKLAEELEQNAVQNSALQLASLEQKKADENVMKLAEDQKRQKEELHNRIIQL EKQLDQKQALELEIEQLRGSLNVIRHMGDEDDIEVLRKMEATLKELREKEGELEDVEA LNQTLIVRERKSNDELQEARKELINGLKEISSRAHIGVKRMGELDSKPFFEVMKRRYN EEQAEERASELCSLWDEYLKDPDWHPFKRIKLEGEEEYQEEIICRRPIKEQYP" mRNA complement(join(<2088724..2088751,2090246..2090461, 2091261..2091548,2091655..2091744,2092305..2092486, 2092780..>2093677)) /locus_tag="TCM_042747" /product="XH/XS domain-containing protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:27383.m000163" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027414t1" /inference="similar to AA sequence:ricco:27383.m000163" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7650t1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7650t8_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1330t3" CDS complement(join(<2088725..2088751,2090246..2090461, 2091261..2091548,2091655..2091744,2092305..2092486, 2092780..>2093677)) /locus_tag="TCM_042747" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:27383.m000163; paralog of Thecc1EG027414t1" /codon_start=1 /product="XH/XS domain-containing protein, putative isoform 4" /protein_id="EOY18111.1" /db_xref="TAIR:AT3G48670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTH7" /translation="SGEDSDISESEMEEYEDKSYEKLKNGKHNIKVSEETYTCPYCPK KKKRDYLYKELLQHASGVGNSNSEKRSAKEKANHLALVKYLEKDLVAVGSSSKTAAEE DPLSGYDHDEKIVWPWTGIVVNIPTRRSEDGRSVGESGSKLRDELIRRGFNPIRVLPL WNYRGHSGTAVVEFHKDWPGLHNALSFEKAYQADHHGKKEWCANNDVKFGLYAWVARA DDYKSSGIIGENLRKTSDLKTISGIMEEEARKQDKLVSNLTNIIETKNKHIKEMEARC SETSKSLEVLMDEKDNLLQAYNEEIKKIQLSAREHFLRIFNDHEKLKSQLESHKRDLE LRGVELEKREALNESERKKLAEELEQNAVQNSALQLASLEQKKADENVMKLAEDQKRQ KEELHNRIIQLEKQLDQKQALELEIEQLRGSLNVIRHMGDEDDIEVLRKMEATLKELR EKEGELEDVEALNQTLIVRERKSNDELQEARKELINGLKEISSRAHIGVKRMGELDSK PFFEVMKRRYNEEQAEERASELCSLWDEYLKDPDWHPFKRIKLEGEEEYQEIICRRPI K" CDS complement(join(2089125..2089361,2090246..2090461, 2091261..2091542,2091655..2091744,2092305..2092486, 2092780..2093689)) /locus_tag="TCM_042747" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27383.m000163; paralog of Thecc1EG027414t1" /codon_start=1 /product="XH/XS domain-containing protein, putative isoform 2" /protein_id="EOY18109.1" /db_xref="TAIR:AT3G48670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTH7" /translation="MDISSGEDSDISESEMEEYEDKSYEKLKNGKHNIKVSEETYTCP YCPKKKKRDYLYKELLQHASGVGNSNSEKRSAKEKANHLALVKYLEKDLVAVGSSSKT AAEEDPLSGYDHDEKIVWPWTGIVVNIPTRRSEDGRSVGESGSKLRDELIRRGFNPIR VLPLWNYRGHSGTAVVEFHKDWPGLHNALSFEKAYQADHHGKKEWCANNDVKFGLYAW VARADDYKSSGIIGENLRKTSDLKTISGIMEEEARKQDKLVSNLTNIIETKNKHIKEM EARCSETSKSLEVLMDEKDNLLQAYNEEIKKIQLSAREHFLRIFNDHEKLKSQLESHK RDLELRGVELEKREALNESERKKLAEELEQNAVQNSALQLASLEQKKADENVMKLAED QKKEELHNRIIQLEKQLDQKQALELEIEQLRGSLNVIRHMGDEDDIEVLRKMEATLKE LREKEGELEDVEALNQTLIVRERKSNDELQEARKELINGLKEISSRAHIGVKRMGELD SKPFFEVMKRRYNEEQAEERASELCSLWDEYLKDPDWHPFKRIKLEGEEEYQEVINDE DEKLRDLRNQMGNEVYKVVTSAIKEINEYNPSGRYIISELWNYGEGRKATLQEGVIYL LKLWNTAKRKRGTI" CDS complement(join(2089125..2089361,2090246..2090461, 2091261..2091548,2091655..2091744,2092305..2092486, 2092780..2093689)) /locus_tag="TCM_042747" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27383.m000163; paralog of Thecc1EG027414t1" /codon_start=1 /product="XH/XS domain-containing protein, putative isoform 1" /protein_id="EOY18108.1" /db_xref="TAIR:AT3G48670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTH7" /translation="MDISSGEDSDISESEMEEYEDKSYEKLKNGKHNIKVSEETYTCP YCPKKKKRDYLYKELLQHASGVGNSNSEKRSAKEKANHLALVKYLEKDLVAVGSSSKT AAEEDPLSGYDHDEKIVWPWTGIVVNIPTRRSEDGRSVGESGSKLRDELIRRGFNPIR VLPLWNYRGHSGTAVVEFHKDWPGLHNALSFEKAYQADHHGKKEWCANNDVKFGLYAW VARADDYKSSGIIGENLRKTSDLKTISGIMEEEARKQDKLVSNLTNIIETKNKHIKEM EARCSETSKSLEVLMDEKDNLLQAYNEEIKKIQLSAREHFLRIFNDHEKLKSQLESHK RDLELRGVELEKREALNESERKKLAEELEQNAVQNSALQLASLEQKKADENVMKLAED QKRQKEELHNRIIQLEKQLDQKQALELEIEQLRGSLNVIRHMGDEDDIEVLRKMEATL KELREKEGELEDVEALNQTLIVRERKSNDELQEARKELINGLKEISSRAHIGVKRMGE LDSKPFFEVMKRRYNEEQAEERASELCSLWDEYLKDPDWHPFKRIKLEGEEEYQEVIN DEDEKLRDLRNQMGNEVYKVVTSAIKEINEYNPSGRYIISELWNYGEGRKATLQEGVI YLLKLWNTAKRKRGTI" CDS complement(join(2089348..2089361,2090245..2090461, 2091261..2091548,2091655..2091744,2092305..2092486, 2092780..2093689)) /locus_tag="TCM_042747" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27383.m000163; paralog of Thecc1EG027414t1" /codon_start=1 /product="XH/XS domain-containing protein, putative isoform 3" /protein_id="EOY18110.1" /db_xref="TAIR:AT3G48670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTH7" /translation="MDISSGEDSDISESEMEEYEDKSYEKLKNGKHNIKVSEETYTCP YCPKKKKRDYLYKELLQHASGVGNSNSEKRSAKEKANHLALVKYLEKDLVAVGSSSKT AAEEDPLSGYDHDEKIVWPWTGIVVNIPTRRSEDGRSVGESGSKLRDELIRRGFNPIR VLPLWNYRGHSGTAVVEFHKDWPGLHNALSFEKAYQADHHGKKEWCANNDVKFGLYAW VARADDYKSSGIIGENLRKTSDLKTISGIMEEEARKQDKLVSNLTNIIETKNKHIKEM EARCSETSKSLEVLMDEKDNLLQAYNEEIKKIQLSAREHFLRIFNDHEKLKSQLESHK RDLELRGVELEKREALNESERKKLAEELEQNAVQNSALQLASLEQKKADENVMKLAED QKRQKEELHNRIIQLEKQLDQKQALELEIEQLRGSLNVIRHMGDEDDIEVLRKMEATL KELREKEGELEDVEALNQTLIVRERKSNDELQEARKELINGLKEISSRAHIGVKRMGE LDSKPFFEVMKRRYNEEQAEERASELCSLWDEYLKDPDWHPFKRIKLEGEEEYQGSDQ " gene 2096684..2107636 /locus_tag="TCM_042748" /note="dbxref CacaoGD:Thecc1EG042748" mRNA join(2096684..2097159,2097651..2097727,2098154..2098403, 2098934..2099557,2100398..2100571,2101238..2101364, 2101453..2101562,2101965..2102165,2103070..2104061, 2104799..2105068,2105312..2106178) /locus_tag="TCM_042748" /product="Affected trafxn,cking 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016531001" /inference="similar to AA sequence:ricco:27383.m000162" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17433t1" mRNA join(2096770..2097159,2097651..2097727,2098154..2098403, 2098934..2099557,2100398..2100571,2101238..2101364, 2101453..2101562,2101965..2102165,2103070..2104061, 2104799..2105068,2105312..2106570,2106674..2106780, 2107095..2107178,2107458..2107517,2107607..2107636) /locus_tag="TCM_042748" /product="Affected trafxn,cking 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016531001" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400051708" /inference="similar to AA sequence:ricco:27383.m000162" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7754t6; alternateUTRof:Thecc1EG042748t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17433t1" CDS join(2096944..2097159,2097651..2097727,2098154..2098403, 2098934..2099557,2100398..2100571,2101238..2101364, 2101453..2101562,2101965..2102165,2103070..2104061, 2104799..2105068,2105312..2105675) /locus_tag="TCM_042748" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27383.m000162" /codon_start=1 /product="Affected trafxn,cking 2 isoform 1" /protein_id="EOY18113.1" /db_xref="TAIR:AT3G55480.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTH8" /translation="MFPQFGATAETLSKASTMVFRIGTDAHLYDDPDDVSIAPLLDSK FDSEKCEALKRLLAQIAQGFDVSNFFPQVVKNVASQSLEVKKLVYLYLLHYAEKRPNE ALLSINCFQKDLGDPNPLVRAWALRTMAGIRLHVIAPLVLVAVGKCARDPSVYVRKCA ANALPKLHDLRQEEHTSAVEEIVGILLNDHSPGVVGAAAAAFASVCPYNLSLIGRNYR KLCEILPDVEEWGQIVLIGILLRYVIARHGLVKESIMLSLHCTESSHSEKDGSDVDFR LLKVPIDMSGTCDSEFVNMVSKCYIESPDEYLSRSSYTNRVSFELNGTHFTSKTNDDV KILLYCTSPLLWSNNSAVVLSAAGVHWVMAPKEDIKRIVKPLLFILRSSNASKYVVLC NIQVFAKAMPSLFAPYYEDLFICSSDSYQIKGLKLEILSSIATDSSISSIFKEFQDYI RDPDRRFAADTIAAIGLCAQRLPNMAYSCVDGLLALTKEDFLTKDFGSGDQEAGVLIQ AIMSIKSIIKQDPPSHEKVIIQLVSSLDSIKVPAARAMIIWMVGEYSSLGEIIPRMLT TVLKYLAWCFTSEALETKLQILNTASKVLLCATGEDLWTFKKVFSYLVELAECDLNYD VRDRARLLKKLPSCNLGSQGPEEGTNGLNEKNVLHVVAKCIFGRQTREVKAESNNYRF YLPGSLSQIVLHAAPGYEPLPKPCSLPLDDLNVPEGTHAVEKGPDYSGTDDHGTSSGP LDEESASDYDSQHSITGSSGSGRSDDNEFTSEENDNADPLIQISDVGNASENQNGVSQ SSPANLGELMSNRALESWLEEQPGSSNPGISEQSQVCKSSARISIRDVGRQVKPKSYS LLDPANGNGLKVDYSFSSEISSISPLLVCIEVFFKNCSSETIMEITLVDEESTRALDS ADQAAAVNESSMKSYDNVPTLVPMEEIPSLEPGQTTRRLLQVRFHHHLLPLKLALFCN GKKLPIKLRPDIGYFVKPLPMDVEAFTDEESHLPGMFEYTRSCTFTDHIGELNKESGD GLLIKDKFLAICESLALKMLSNANLCLVSVDMPIAANLDDASGLRLRFSCEILSSLIP CLITITVQGKCCDPLNLFIKVNCEETVFGLNLMNRIVNFLVEPALF" CDS join(2096944..2097159,2097651..2097727,2098154..2098403, 2098934..2099557,2100398..2100571,2101238..2101364, 2101453..2101562,2101965..2102165,2103070..2104061, 2104799..2105068,2105312..2105675) /locus_tag="TCM_042748" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27383.m000162" /codon_start=1 /product="Affected trafxn,cking 2 isoform 1" /protein_id="EOY18114.1" /db_xref="TAIR:AT3G55480.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTH8" /translation="MFPQFGATAETLSKASTMVFRIGTDAHLYDDPDDVSIAPLLDSK FDSEKCEALKRLLAQIAQGFDVSNFFPQVVKNVASQSLEVKKLVYLYLLHYAEKRPNE ALLSINCFQKDLGDPNPLVRAWALRTMAGIRLHVIAPLVLVAVGKCARDPSVYVRKCA ANALPKLHDLRQEEHTSAVEEIVGILLNDHSPGVVGAAAAAFASVCPYNLSLIGRNYR KLCEILPDVEEWGQIVLIGILLRYVIARHGLVKESIMLSLHCTESSHSEKDGSDVDFR LLKVPIDMSGTCDSEFVNMVSKCYIESPDEYLSRSSYTNRVSFELNGTHFTSKTNDDV KILLYCTSPLLWSNNSAVVLSAAGVHWVMAPKEDIKRIVKPLLFILRSSNASKYVVLC NIQVFAKAMPSLFAPYYEDLFICSSDSYQIKGLKLEILSSIATDSSISSIFKEFQDYI RDPDRRFAADTIAAIGLCAQRLPNMAYSCVDGLLALTKEDFLTKDFGSGDQEAGVLIQ AIMSIKSIIKQDPPSHEKVIIQLVSSLDSIKVPAARAMIIWMVGEYSSLGEIIPRMLT TVLKYLAWCFTSEALETKLQILNTASKVLLCATGEDLWTFKKVFSYLVELAECDLNYD VRDRARLLKKLPSCNLGSQGPEEGTNGLNEKNVLHVVAKCIFGRQTREVKAESNNYRF YLPGSLSQIVLHAAPGYEPLPKPCSLPLDDLNVPEGTHAVEKGPDYSGTDDHGTSSGP LDEESASDYDSQHSITGSSGSGRSDDNEFTSEENDNADPLIQISDVGNASENQNGVSQ SSPANLGELMSNRALESWLEEQPGSSNPGISEQSQVCKSSARISIRDVGRQVKPKSYS LLDPANGNGLKVDYSFSSEISSISPLLVCIEVFFKNCSSETIMEITLVDEESTRALDS ADQAAAVNESSMKSYDNVPTLVPMEEIPSLEPGQTTRRLLQVRFHHHLLPLKLALFCN GKKLPIKLRPDIGYFVKPLPMDVEAFTDEESHLPGMFEYTRSCTFTDHIGELNKESGD GLLIKDKFLAICESLALKMLSNANLCLVSVDMPIAANLDDASGLRLRFSCEILSSLIP CLITITVQGKCCDPLNLFIKVNCEETVFGLNLMNRIVNFLVEPALF" gene complement(2105954..2109331) /locus_tag="TCM_042749" /note="dbxref CacaoGD:Thecc1EG042749" mRNA complement(join(2105954..2106570,2106674..2106781, 2107096..2107179,2107459..2107518,2107608..2107707, 2107795..2108215,2108306..2108621,2108712..2108828, 2108909..2109331)) /locus_tag="TCM_042749" /product="WAP four-disulfide core domain protein 8, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21040.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21040.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7719t2" CDS complement(join(2106262..2106570,2106674..2106781, 2107096..2107179,2107459..2107518,2107608..2107707, 2107795..2108215,2108306..2108621,2108712..2108828, 2108909..2108977)) /locus_tag="TCM_042749" /codon_start=1 /product="WAP four-disulfide core domain protein 8, putative" /protein_id="EOY18115.1" /db_xref="Phytozome:POPTR_0010s21040.1" /db_xref="TAIR:AT2G39690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTH9" /translation="MKFEDLLMERSEEEKKKLQLQEEVDNLQAELDEEKEINRVLRCA LRGPELSQPLLSSLVPPRVQALLAELAMVEDEILSLERKIDELKMKLYQEKKQTKEWK MQQLQQQKNQLICEPGNVSVQLDDLKQRTRSQNYEVFDKGKIKSHRRASLGSALDTLS LSSSECTDEFRERSKKHTWRIQSQCPINKELIYEKPNALSEELVKCLIGIFLELNQAS QDREGLAIVPKLSFSCMASKGYTAKPSLNFKSPLFPFNQNTSNIDPYNTLPELVGMLR DIGPYKNFIQITRHSLDVSRFSECLEAIGKLRVLMHKLSNVDLTFLTYKQKLAFWINI YNACIMHAFLEHGLPSTQEKLLALMNKAALNVGGIVLNALAIEHFVLRHPCESKYGPM DEKEMLLRHAYGLGYPEPNVTFALCRGSWSSPALRIYTADEVVNELGRARVEYLEASV GVTNKRKILVPRLLQWHMRDFADDMESLLEWIYSQLPRSASLKRLIMECLNKETKSLM TRMVEVQHYESEFRYLLPL" gene complement(2110792..2113333) /locus_tag="TCM_042750" /note="dbxref CacaoGD:Thecc1EG042750" mRNA complement(join(2110792..2111067,2111355..2111490, 2111757..2111913,2112442..2112507,2113200..2113331)) /locus_tag="TCM_042750" /product="Calcium-dependent lipid-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016210t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016533001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16368t00001" mRNA complement(join(2110813..2111067,2111355..2111490, 2111757..2111895,2113200..2113333)) /locus_tag="TCM_042750" /product="Calcium-dependent lipid-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21060.1" /inference="similar to AA sequence:Phytozome:Glyma02g41520.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01264t00002; inference alignment:Newbler:10:TSA:cgbaB_g16368t00001" CDS complement(join(2111020..2111067,2111355..2111490, 2111757..2111895,2113200..2113266)) /locus_tag="TCM_042750" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Calcium-dependent lipid-binding family protein isoform 2" /protein_id="EOY18117.1" /db_xref="Phytozome:Glyma02g41520.2" /db_xref="TAIR:AT3G55470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTI0" /translation="MAVGILEVLLVSAKGLEDTDFLGGGSSSSWNERFTFKVEYPGSG DDYKLILKIMDKDTFSADDFVGQATIYVEDLLAIGAENGNAELHPGKYSVVQADLSYC GEIQVGVTFTRKVEDEEEYGGWKESSF" CDS complement(join(2111020..2111067,2111355..2111490, 2111757..2111913,2112442..2112507,2113200..2113266)) /locus_tag="TCM_042750" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016210t1" /codon_start=1 /product="Calcium-dependent lipid-binding family protein isoform 1" /protein_id="EOY18116.1" /db_xref="Phytozome:GSVIVT01016533001" /db_xref="TAIR:AT3G55470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTI0" /translation="MAVGILEVLLVSAKGLEDTDFLGGMDPYVRIQYKGQERKSSVAR GIAHGAGGGSSSSWNERFTFKVEYPGSGDDYKLILKIMDKDTFSADDFVGQATIYVED LLAIGAENGNAELHPGKYSVVQADLSYCGEIQVGVTFTRKVEDEEEYGGWKESSF" gene complement(2114101..2117798) /locus_tag="TCM_042751" /note="dbxref CacaoGD:Thecc1EG042751" mRNA complement(join(2114101..2114460,2114869..2115039, 2115133..2115211,2115444..2115481,2115587..2115751, 2116856..2116933,2117025..2117195,2117724..2117798)) /locus_tag="TCM_042751" /product="SC35-like splicing factor 30 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05670.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016562001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b041278t1a2; inference alignment:Newbler:10:TSA:cgbaB_g09708t00001" mRNA complement(join(2114101..2114464,2114869..2115039, 2115133..2115211,2115444..2115481,2115587..2115751, 2116856..2116933,2117025..2117195,2117724..2117798)) /locus_tag="TCM_042751" /product="SC35-like splicing factor 30 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05670.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21070.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01331t00003; alternateUTRof:Thecc1EG042751t1; inference alignment:Newbler:10:TSA:cgbaB_g09708t00001; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9685t6" mRNA complement(join(2114109..2114464,2114869..2115039, 2115133..2115211,2115444..2115481,2115587..2115751, 2116856..2116933,2117025..2117195,2117533..2117608, 2117724..2117787)) /locus_tag="TCM_042751" /product="SC35-like splicing factor 30 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05670.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21070.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09708t00001; inference alignment:Newbler:10:TSA:cgbaB_g09708t00001" CDS complement(join(2114316..2114460,2114869..2115039, 2115133..2115211,2115444..2115481,2115587..2115751, 2116856..2116933,2117025..2117185)) /locus_tag="TCM_042751" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="SC35-like splicing factor 30 isoform 3" /protein_id="EOY18120.1" /db_xref="Phytozome:GSVIVT01016562001" /db_xref="TAIR:AT3G55460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6K542" /translation="MRRYSPQYYSPPRRGYGGRERSPPRRGYGGGGYGRRREQNHGSL LVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTGEPRGFAFVQFVDSYEAAEAQRR MNGKLFAGREISVVVAAETRKRPEEMRHKARLRGSSGYGGRSSYYGRSRSRSLSPMHS PHHPSGSRGRYRSRSYSPAARRRGNYSVSPGRRHADHPRSPRGPPQERDGDYNHRSYS PGYENAGGNGYGDLHMSPRKLVLHGGHRLVECQGPPLGPDQGLLTCHPGVADKQVGDR KN" CDS complement(join(2114341..2114464,2114869..2115039, 2115133..2115211,2115444..2115481,2115587..2115751, 2116856..2116933,2117025..2117185)) /locus_tag="TCM_042751" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="SC35-like splicing factor 30 isoform 1" /protein_id="EOY18118.1" /db_xref="Phytozome:POPTR_0010s21070.1" /db_xref="TAIR:AT3G55460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6K542" /translation="MRRYSPQYYSPPRRGYGGRERSPPRRGYGGGGYGRRREQNHGSL LVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTGEPRGFAFVQFVDSYEAAEAQRR MNGKLFAGREISVVVAAETRKRPEEMRHKARLRGSSGYGGRSSYYGRSRSRSLSPMHS PHHPSGSRGRYRSRSYSPAARRRGNYSVSPGRRHADHPRSPRGPPQERDGDYNHRSYS PGYENAGGNGYGEKSAYESEEARAAWRSPPGRVSRSPSGSRSRSADLSPRRSR" CDS complement(join(2114341..2114464,2114869..2115039, 2115133..2115211,2115444..2115481,2115587..2115751, 2116856..2116933,2117025..2117185)) /locus_tag="TCM_042751" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="SC35-like splicing factor 30 isoform 1" /protein_id="EOY18119.1" /db_xref="Phytozome:POPTR_0010s21070.1" /db_xref="TAIR:AT3G55460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6K542" /translation="MRRYSPQYYSPPRRGYGGRERSPPRRGYGGGGYGRRREQNHGSL LVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTGEPRGFAFVQFVDSYEAAEAQRR MNGKLFAGREISVVVAAETRKRPEEMRHKARLRGSSGYGGRSSYYGRSRSRSLSPMHS PHHPSGSRGRYRSRSYSPAARRRGNYSVSPGRRHADHPRSPRGPPQERDGDYNHRSYS PGYENAGGNGYGEKSAYESEEARAAWRSPPGRVSRSPSGSRSRSADLSPRRSR" mobile_element complement(2114693..2114769) /note="source:scaffold_3_CACTA_0385 5146 5221" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2118282..2118393 /note="source:CACAO_PIF_E119_scaffold_3 4519 4623" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(2118680..2122446) /locus_tag="TCM_042752" /note="dbxref CacaoGD:Thecc1EG042752" mRNA complement(join(2118680..2119415,2119515..2119651, 2119747..2119886,2119996..2120099,2120585..2120717, 2120864..2120961,2121098..2121199,2121702..2121799, 2121924..2121999,2122107..2122446)) /locus_tag="TCM_042752" /product="Radical SAM superfamily protein" /inference="alignment:exonerate- protein:2:ricco:27383.m000158" /inference="similar to AA sequence:ricco:27383.m000158" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07828t00001" CDS complement(join(2119239..2119415,2119515..2119651, 2119747..2119886,2119996..2120099,2120585..2120717, 2120864..2120961,2121098..2121199,2121702..2121799, 2121924..2121999,2122107..2122412)) /locus_tag="TCM_042752" /note="dbxref ricco:27383.m000158" /codon_start=1 /product="Radical SAM superfamily protein" /protein_id="EOY18121.1" /db_xref="TAIR:AT2G39670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMI5" /translation="MRLKQGFRLFGHQRTKSSGEASAMITTKMSMLQHVCSVPLTRAI RPRPFTVSGAATAVTPSRNLTVSFPSSSSSLRTPHVDPRVLLGMSEQDLQQLAVDFGQ QRYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLMEAGWTIGRSPIYHTVTAADGTVK LLIKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLRRH EIIEQVYDPRLCEQVLAIEDIFKRRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDVQIG QRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQELREMIVPSAKSYPLDAIMKDC RDYFVETSRRVSFEYALLAGVNDSVEQAVELAELLHEWGRNYHVNLIPFNPIEGSEYR RPYKKAVLAFAGALESRKVTVSIRQTRGLDASAACGQLRNNFQKNPLLTESDSEQSQS NVAVAC" gene complement(2123792..2126491) /locus_tag="TCM_042753" /note="dbxref CacaoGD:Thecc1EG042753" mRNA complement(join(2123792..2124556,2124872..2124995, 2125095..2125237,2125327..2125462,2125593..2125912, 2126141..2126491)) /locus_tag="TCM_042753" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29587.m000230" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041829t1" /inference="similar to AA sequence:ricco:27383.m000157" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02347t00001" mRNA complement(join(2123800..2124558,2125251..2125462, 2125593..2125912,2126141..2126375)) /locus_tag="TCM_042753" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29587.m000230" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018449t2" /inference="similar to AA sequence:ricco:27383.m000157" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7863t3_C1; inference alignment:Newbler:10:TSA:cgbaB_g02347t00001" CDS complement(join(2124099..2124556,2124872..2124995, 2125095..2125237,2125327..2125462,2125593..2125912, 2126141..2126192)) /locus_tag="TCM_042753" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27383.m000157; paralog of Thecc1EG041829t1" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY18122.1" /db_xref="TAIR:AT1G07570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10BD9" /translation="MGSCFSARIKAESPLHNEANSGHGGGKYGNGMSGSSSRISSVSV ARTEGEILQSSNLKSFSFSELRTATRNFRPDSVLGEGGFGCVFKGWVDENSLTAAKPG TGMVIAVKRLNQEGLQGHQEWLAEINYLGQLYHPNLVKLVGYCLEDDHRLLVYEFMPK GSLENHLFRRNSYFQPLSWNLRMKVALGAAKGLAFLHSDEAKVIYRDFKTSNVLIDSN FNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYMATGHLTARSDVYSFGVVLLE MLTGKRAVDKNRPSREQNLVDWAKPYLTSKRKILQVMDARIEGQYTLDVALKAAYVAL QCLSIEPKLRPNMNAVVKVLEQLQDTGDKGGPRNASVQNSHQNSRNAAKFQRKNANDV CNGIDGSCPQPSASPLPT" CDS complement(join(2124099..2124558,2125251..2125462, 2125593..2125912,2126141..2126192)) /locus_tag="TCM_042753" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27383.m000157; paralog of Thecc1EG018449t2" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY18123.1" /db_xref="TAIR:AT2G39660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10BD9" /translation="MGSCFSARIKAESPLHNEANSGHGGGKYGNGMSGSSSRISSVSV ARTEGEILQSSNLKSFSFSELRTATRNFRPDSVLGEGGFGCVFKGWVDENSLTAAKPG TGMVIAVKRLNQEGLQGHQEWLAEINYLGQLYHPNLVKLVGYCLEDDHRLLVYEFMPK GSLENHLFRSELCLYIFLSLASSILFISRILSKTSGHLTARSDVYSFGVVLLEMLTGK RAVDKNRPSREQNLVDWAKPYLTSKRKILQVMDARIEGQYTLDVALKAAYVALQCLSI EPKLRPNMNAVVKVLEQLQDTGDKGGPRNASVQNSHQNSRNAAKFQRKNANDVCNGID GSCPQPSASPLPT" gene complement(2128694..2135752) /locus_tag="TCM_042754" /note="dbxref CacaoGD:Thecc1EG042754" mRNA complement(join(2128694..2129088,2129145..2129404, 2129891..2130035,2130119..2130257,2130831..2130850, 2130999..2131033,2131650..2131749,2132123..2135414, 2135542..2135601)) /locus_tag="TCM_042754" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene07677" /inference="similar to AA sequence:ricco:27758.m000324" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t3" mRNA complement(join(2129376..2129916,2130228..2130850, 2130999..2131033,2132086..2135752)) /locus_tag="TCM_042754" /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene07677" /inference="similar to AA sequence:ricco:27758.m000324" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc98t10_C1; alternateUTRof:Thecc1EG042754t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t3; inference alignment:Newbler:10:TSA:cgbaP2_g00035t00004_C2" mRNA complement(join(2129729..2130035,2130119..2130850, 2132084..2135414,2135542..2135725)) /locus_tag="TCM_042754" /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene07677" /inference="similar to AA sequence:ricco:27758.m000324" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t6; alternateUTRof:Thecc1EG042754t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t3; inference alignment:Newbler:10:TSA:cgbaP2_g00035t00004_C2" mRNA complement(join(2129792..2130035,2130119..2130850, 2132086..2135725)) /locus_tag="TCM_042754" /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene07677" /inference="similar to AA sequence:ricco:27758.m000324" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t7; alternateUTRof:Thecc1EG042754t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t3; inference alignment:Newbler:10:TSA:cgbaP2_g00035t00004_C2" mRNA complement(join(2130007..2130035,2130119..2130850, 2130999..2131033,2132086..2135414,2135542..2135752)) /locus_tag="TCM_042754" /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene07677" /inference="similar to AA sequence:ricco:27758.m000324" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc98t7; alternateUTRof:Thecc1EG042754t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t3; inference alignment:Newbler:10:TSA:cgbaP2_g00035t00004_C2" mRNA complement(join(2130007..2130035,2130119..2130850, 2130999..2131033,2132086..2135429,2135542..2135752)) /locus_tag="TCM_042754" /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene07677" /inference="similar to AA sequence:ricco:27758.m000324" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc98t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t3; inference alignment:Newbler:10:TSA:cgbaP2_g00035t00004_C2" mRNA complement(join(2130007..2130035,2130119..2130850, 2130999..2131033,2132086..2135434,2135542..2135752)) /locus_tag="TCM_042754" /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene07677" /inference="similar to AA sequence:ricco:27758.m000324" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc98t3; alternateUTRof:Thecc1EG042754t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t3; inference alignment:Newbler:10:TSA:cgbaP2_g00035t00004_C2" mRNA complement(join(2130007..2130035,2130119..2130850, 2130999..2131033,2132086..2135752)) /locus_tag="TCM_042754" /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene07677" /inference="similar to AA sequence:ricco:27758.m000324" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc98t11; alternateUTRof:Thecc1EG042754t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t3; inference alignment:Newbler:10:TSA:cgbaP2_g00035t00004_C2" mRNA complement(join(2130007..2130035,2130119..2131033, 2132086..2135752)) /locus_tag="TCM_042754" /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene07677" /inference="similar to AA sequence:ricco:27758.m000324" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc98t6; alternateUTRof:Thecc1EG042754t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t3; inference alignment:Newbler:10:TSA:cgbaP2_g00035t00004_C2" CDS complement(join(2130189..2130257,2130831..2130850, 2130999..2131033,2131650..2131749,2132123..2135402)) /locus_tag="TCM_042754" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27758.m000324" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY18124.1" /db_xref="TAIR:AT1G20920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW84" /translation="MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEKHRER GRERKEREREKEKERERAREKERERDREKREREREREREREKRERERERERERERERE RERKSREREKRREYNSDDSKEERERHRKRRRRERDDDNNDDYKERESKLNREESPVRK KSGDDELEKEEKKSREEEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEESEREKRGEG NAEDEETKVGKAWTLEGESDDDEVAPTKLETNMDVDENENSNSKPDSKGIGDAMMEDG DSDNGEDKMLVTQNGGNGISEEDDEIDPLDAFMNSMVLPEVEKLSNAVVVPPTTADDD KNGNLKKDKKDGLSNGGQQPKKGSNKALGRIIPGEDSDSDYGDFENDEEDLEDEDDDE FMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKELELKLHG KDVPKPVKTWHQTGLTSKILETIRKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGK TLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKALGIRCVPVY GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRATYLVLDEADRMFDMG FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL VEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLLKHGYPCLSLHGAKD QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGR AGRKGCAITFISEDDARYAPDLVKALELSEQVLPDDLKALADGFMAKVNQGLEQAHGT GYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGVRKAGGDISQQTALA QIAAMAAASKAGTALMQNPLSSAQLLPNAVLPVSLPGVLGVSMPGTAAVVPGSGLPGL ANEEAARKAALQAALNLQHNLAKIQADAMPEHYEAELEINEFPQNARWKVTHKETLGP ISEWTGAAITTRGQFFPPGRIPGPGERKLYLFIEGPTELSVKRAKAELKRVLEDFSHQ SLQLPDCWICSRTCPSDLKVNLRDGVPLRMTQESAFFSGDRAITSSHLHCGLRRAGFH IANASRVAGLAFDMRVSIFCL" mRNA complement(join(2131004..2131033,2131650..2131749, 2132086..2135752)) /locus_tag="TCM_042754" /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene07677" /inference="similar to AA sequence:ricco:27758.m000324" /note="transcript variant 10; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc95t8; alternateUTRof:Thecc1EG042754t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t3; inference alignment:Newbler:10:TSA:cgbaP2_g00035t00004_C2" mRNA complement(join(2131613..2131749,2132086..2135414, 2135542..2135725)) /locus_tag="TCM_042754" /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene07677" /inference="similar to AA sequence:ricco:27758.m000324" /note="transcript variant 11; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t8; alternateUTRof:Thecc1EG042754t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1518t3; inference alignment:Newbler:10:TSA:cgbaP2_g00035t00004_C2" CDS complement(2132088..2135402) /locus_tag="TCM_042754" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27758.m000324" /codon_start=1 /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /protein_id="EOY18125.1" /db_xref="TAIR:AT1G20920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW84" /translation="MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEKHRER GRERKEREREKEKERERAREKERERDREKREREREREREREKRERERERERERERERE RERKSREREKRREYNSDDSKEERERHRKRRRRERDDDNNDDYKERESKLNREESPVRK KSGDDELEKEEKKSREEEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEESEREKRGEG NAEDEETKVGKAWTLEGESDDDEVAPTKLETNMDVDENENSNSKPDSKGIGDAMMEDG DSDNGEDKMLVTQNGGNGISEEDDEIDPLDAFMNSMVLPEVEKLSNAVVVPPTTADDD KNGNLKKDKKDGLSNGGQQPKKGSNKALGRIIPGEDSDSDYGDFENDEEDLEDEDDDE FMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKELELKLHG KDVPKPVKTWHQTGLTSKILETIRKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGK TLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKALGIRCVPVY GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRATYLVLDEADRMFDMG FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL VEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLLKHGYPCLSLHGAKD QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGR AGRKGCAITFISEDDARYAPDLVKALELSEQVLPDDLKALADGFMAKVNQGLEQAHGT GYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGVRKAGGDISQQTALA QIAAMAAASKAGTALMQNPLSSAQLLPNAVLPVSLPGVLGVSMPGTAAVVPGSGLPGL ANEEAARKAALQAALNLQHNLAKIQADAMPEHYEAELEINEFPQNARWKVTHKETLGP ISEWTGAAITTRGQFFPPGRIPGPGERKLYLFIEGPTELSVKRAKAELKRVLEDFSHQ SLQLPGGTQPGRYQVL" CDS complement(2132088..2135402) /locus_tag="TCM_042754" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27758.m000324" /codon_start=1 /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /protein_id="EOY18126.1" /db_xref="TAIR:AT1G20920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW84" /translation="MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEKHRER GRERKEREREKEKERERAREKERERDREKREREREREREREKRERERERERERERERE RERKSREREKRREYNSDDSKEERERHRKRRRRERDDDNNDDYKERESKLNREESPVRK KSGDDELEKEEKKSREEEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEESEREKRGEG NAEDEETKVGKAWTLEGESDDDEVAPTKLETNMDVDENENSNSKPDSKGIGDAMMEDG DSDNGEDKMLVTQNGGNGISEEDDEIDPLDAFMNSMVLPEVEKLSNAVVVPPTTADDD KNGNLKKDKKDGLSNGGQQPKKGSNKALGRIIPGEDSDSDYGDFENDEEDLEDEDDDE FMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKELELKLHG KDVPKPVKTWHQTGLTSKILETIRKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGK TLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKALGIRCVPVY GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRATYLVLDEADRMFDMG FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL VEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLLKHGYPCLSLHGAKD QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGR AGRKGCAITFISEDDARYAPDLVKALELSEQVLPDDLKALADGFMAKVNQGLEQAHGT GYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGVRKAGGDISQQTALA QIAAMAAASKAGTALMQNPLSSAQLLPNAVLPVSLPGVLGVSMPGTAAVVPGSGLPGL ANEEAARKAALQAALNLQHNLAKIQADAMPEHYEAELEINEFPQNARWKVTHKETLGP ISEWTGAAITTRGQFFPPGRIPGPGERKLYLFIEGPTELSVKRAKAELKRVLEDFSHQ SLQLPGGTQPGRYQVL" CDS complement(2132088..2135402) /locus_tag="TCM_042754" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:27758.m000324" /codon_start=1 /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /protein_id="EOY18127.1" /db_xref="TAIR:AT1G20920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW84" /translation="MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEKHRER GRERKEREREKEKERERAREKERERDREKREREREREREREKRERERERERERERERE RERKSREREKRREYNSDDSKEERERHRKRRRRERDDDNNDDYKERESKLNREESPVRK KSGDDELEKEEKKSREEEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEESEREKRGEG NAEDEETKVGKAWTLEGESDDDEVAPTKLETNMDVDENENSNSKPDSKGIGDAMMEDG DSDNGEDKMLVTQNGGNGISEEDDEIDPLDAFMNSMVLPEVEKLSNAVVVPPTTADDD KNGNLKKDKKDGLSNGGQQPKKGSNKALGRIIPGEDSDSDYGDFENDEEDLEDEDDDE FMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKELELKLHG KDVPKPVKTWHQTGLTSKILETIRKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGK TLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKALGIRCVPVY GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRATYLVLDEADRMFDMG FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL VEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLLKHGYPCLSLHGAKD QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGR AGRKGCAITFISEDDARYAPDLVKALELSEQVLPDDLKALADGFMAKVNQGLEQAHGT GYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGVRKAGGDISQQTALA QIAAMAAASKAGTALMQNPLSSAQLLPNAVLPVSLPGVLGVSMPGTAAVVPGSGLPGL ANEEAARKAALQAALNLQHNLAKIQADAMPEHYEAELEINEFPQNARWKVTHKETLGP ISEWTGAAITTRGQFFPPGRIPGPGERKLYLFIEGPTELSVKRAKAELKRVLEDFSHQ SLQLPGGTQPGRYQVL" CDS complement(2132088..2135402) /locus_tag="TCM_042754" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:27758.m000324" /codon_start=1 /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /protein_id="EOY18128.1" /db_xref="TAIR:AT1G20920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW84" /translation="MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEKHRER GRERKEREREKEKERERAREKERERDREKREREREREREREKRERERERERERERERE RERKSREREKRREYNSDDSKEERERHRKRRRRERDDDNNDDYKERESKLNREESPVRK KSGDDELEKEEKKSREEEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEESEREKRGEG NAEDEETKVGKAWTLEGESDDDEVAPTKLETNMDVDENENSNSKPDSKGIGDAMMEDG DSDNGEDKMLVTQNGGNGISEEDDEIDPLDAFMNSMVLPEVEKLSNAVVVPPTTADDD KNGNLKKDKKDGLSNGGQQPKKGSNKALGRIIPGEDSDSDYGDFENDEEDLEDEDDDE FMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKELELKLHG KDVPKPVKTWHQTGLTSKILETIRKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGK TLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKALGIRCVPVY GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRATYLVLDEADRMFDMG FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL VEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLLKHGYPCLSLHGAKD QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGR AGRKGCAITFISEDDARYAPDLVKALELSEQVLPDDLKALADGFMAKVNQGLEQAHGT GYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGVRKAGGDISQQTALA QIAAMAAASKAGTALMQNPLSSAQLLPNAVLPVSLPGVLGVSMPGTAAVVPGSGLPGL ANEEAARKAALQAALNLQHNLAKIQADAMPEHYEAELEINEFPQNARWKVTHKETLGP ISEWTGAAITTRGQFFPPGRIPGPGERKLYLFIEGPTELSVKRAKAELKRVLEDFSHQ SLQLPGGTQPGRYQVL" CDS complement(2132088..2135402) /locus_tag="TCM_042754" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:27758.m000324" /codon_start=1 /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /protein_id="EOY18129.1" /db_xref="TAIR:AT1G20920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW84" /translation="MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEKHRER GRERKEREREKEKERERAREKERERDREKREREREREREREKRERERERERERERERE RERKSREREKRREYNSDDSKEERERHRKRRRRERDDDNNDDYKERESKLNREESPVRK KSGDDELEKEEKKSREEEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEESEREKRGEG NAEDEETKVGKAWTLEGESDDDEVAPTKLETNMDVDENENSNSKPDSKGIGDAMMEDG DSDNGEDKMLVTQNGGNGISEEDDEIDPLDAFMNSMVLPEVEKLSNAVVVPPTTADDD KNGNLKKDKKDGLSNGGQQPKKGSNKALGRIIPGEDSDSDYGDFENDEEDLEDEDDDE FMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKELELKLHG KDVPKPVKTWHQTGLTSKILETIRKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGK TLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKALGIRCVPVY GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRATYLVLDEADRMFDMG FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL VEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLLKHGYPCLSLHGAKD QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGR AGRKGCAITFISEDDARYAPDLVKALELSEQVLPDDLKALADGFMAKVNQGLEQAHGT GYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGVRKAGGDISQQTALA QIAAMAAASKAGTALMQNPLSSAQLLPNAVLPVSLPGVLGVSMPGTAAVVPGSGLPGL ANEEAARKAALQAALNLQHNLAKIQADAMPEHYEAELEINEFPQNARWKVTHKETLGP ISEWTGAAITTRGQFFPPGRIPGPGERKLYLFIEGPTELSVKRAKAELKRVLEDFSHQ SLQLPGGTQPGRYQVL" CDS complement(2132088..2135402) /locus_tag="TCM_042754" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:27758.m000324" /codon_start=1 /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /protein_id="EOY18130.1" /db_xref="TAIR:AT1G20920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW84" /translation="MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEKHRER GRERKEREREKEKERERAREKERERDREKREREREREREREKRERERERERERERERE RERKSREREKRREYNSDDSKEERERHRKRRRRERDDDNNDDYKERESKLNREESPVRK KSGDDELEKEEKKSREEEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEESEREKRGEG NAEDEETKVGKAWTLEGESDDDEVAPTKLETNMDVDENENSNSKPDSKGIGDAMMEDG DSDNGEDKMLVTQNGGNGISEEDDEIDPLDAFMNSMVLPEVEKLSNAVVVPPTTADDD KNGNLKKDKKDGLSNGGQQPKKGSNKALGRIIPGEDSDSDYGDFENDEEDLEDEDDDE FMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKELELKLHG KDVPKPVKTWHQTGLTSKILETIRKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGK TLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKALGIRCVPVY GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRATYLVLDEADRMFDMG FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL VEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLLKHGYPCLSLHGAKD QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGR AGRKGCAITFISEDDARYAPDLVKALELSEQVLPDDLKALADGFMAKVNQGLEQAHGT GYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGVRKAGGDISQQTALA QIAAMAAASKAGTALMQNPLSSAQLLPNAVLPVSLPGVLGVSMPGTAAVVPGSGLPGL ANEEAARKAALQAALNLQHNLAKIQADAMPEHYEAELEINEFPQNARWKVTHKETLGP ISEWTGAAITTRGQFFPPGRIPGPGERKLYLFIEGPTELSVKRAKAELKRVLEDFSHQ SLQLPGGTQPGRYQVL" CDS complement(2132088..2135402) /locus_tag="TCM_042754" /note="encoded by transcript variant 8; alternatively spliced; dbxref ricco:27758.m000324" /codon_start=1 /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /protein_id="EOY18131.1" /db_xref="TAIR:AT1G20920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW84" /translation="MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEKHRER GRERKEREREKEKERERAREKERERDREKREREREREREREKRERERERERERERERE RERKSREREKRREYNSDDSKEERERHRKRRRRERDDDNNDDYKERESKLNREESPVRK KSGDDELEKEEKKSREEEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEESEREKRGEG NAEDEETKVGKAWTLEGESDDDEVAPTKLETNMDVDENENSNSKPDSKGIGDAMMEDG DSDNGEDKMLVTQNGGNGISEEDDEIDPLDAFMNSMVLPEVEKLSNAVVVPPTTADDD KNGNLKKDKKDGLSNGGQQPKKGSNKALGRIIPGEDSDSDYGDFENDEEDLEDEDDDE FMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKELELKLHG KDVPKPVKTWHQTGLTSKILETIRKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGK TLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKALGIRCVPVY GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRATYLVLDEADRMFDMG FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL VEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLLKHGYPCLSLHGAKD QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGR AGRKGCAITFISEDDARYAPDLVKALELSEQVLPDDLKALADGFMAKVNQGLEQAHGT GYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGVRKAGGDISQQTALA QIAAMAAASKAGTALMQNPLSSAQLLPNAVLPVSLPGVLGVSMPGTAAVVPGSGLPGL ANEEAARKAALQAALNLQHNLAKIQADAMPEHYEAELEINEFPQNARWKVTHKETLGP ISEWTGAAITTRGQFFPPGRIPGPGERKLYLFIEGPTELSVKRAKAELKRVLEDFSHQ SLQLPGGTQPGRYQVL" CDS complement(2132088..2135402) /locus_tag="TCM_042754" /note="encoded by transcript variant 9; alternatively spliced; dbxref ricco:27758.m000324" /codon_start=1 /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /protein_id="EOY18132.1" /db_xref="TAIR:AT1G20920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW84" /translation="MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEKHRER GRERKEREREKEKERERAREKERERDREKREREREREREREKRERERERERERERERE RERKSREREKRREYNSDDSKEERERHRKRRRRERDDDNNDDYKERESKLNREESPVRK KSGDDELEKEEKKSREEEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEESEREKRGEG NAEDEETKVGKAWTLEGESDDDEVAPTKLETNMDVDENENSNSKPDSKGIGDAMMEDG DSDNGEDKMLVTQNGGNGISEEDDEIDPLDAFMNSMVLPEVEKLSNAVVVPPTTADDD KNGNLKKDKKDGLSNGGQQPKKGSNKALGRIIPGEDSDSDYGDFENDEEDLEDEDDDE FMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKELELKLHG KDVPKPVKTWHQTGLTSKILETIRKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGK TLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKALGIRCVPVY GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRATYLVLDEADRMFDMG FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL VEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLLKHGYPCLSLHGAKD QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGR AGRKGCAITFISEDDARYAPDLVKALELSEQVLPDDLKALADGFMAKVNQGLEQAHGT GYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGVRKAGGDISQQTALA QIAAMAAASKAGTALMQNPLSSAQLLPNAVLPVSLPGVLGVSMPGTAAVVPGSGLPGL ANEEAARKAALQAALNLQHNLAKIQADAMPEHYEAELEINEFPQNARWKVTHKETLGP ISEWTGAAITTRGQFFPPGRIPGPGERKLYLFIEGPTELSVKRAKAELKRVLEDFSHQ SLQLPGGTQPGRYQVL" CDS complement(2132088..2135402) /locus_tag="TCM_042754" /note="encoded by transcript variant 10; alternatively spliced; dbxref ricco:27758.m000324" /codon_start=1 /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /protein_id="EOY18133.1" /db_xref="TAIR:AT1G20920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW84" /translation="MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEKHRER GRERKEREREKEKERERAREKERERDREKREREREREREREKRERERERERERERERE RERKSREREKRREYNSDDSKEERERHRKRRRRERDDDNNDDYKERESKLNREESPVRK KSGDDELEKEEKKSREEEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEESEREKRGEG NAEDEETKVGKAWTLEGESDDDEVAPTKLETNMDVDENENSNSKPDSKGIGDAMMEDG DSDNGEDKMLVTQNGGNGISEEDDEIDPLDAFMNSMVLPEVEKLSNAVVVPPTTADDD KNGNLKKDKKDGLSNGGQQPKKGSNKALGRIIPGEDSDSDYGDFENDEEDLEDEDDDE FMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKELELKLHG KDVPKPVKTWHQTGLTSKILETIRKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGK TLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKALGIRCVPVY GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRATYLVLDEADRMFDMG FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL VEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLLKHGYPCLSLHGAKD QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGR AGRKGCAITFISEDDARYAPDLVKALELSEQVLPDDLKALADGFMAKVNQGLEQAHGT GYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGVRKAGGDISQQTALA QIAAMAAASKAGTALMQNPLSSAQLLPNAVLPVSLPGVLGVSMPGTAAVVPGSGLPGL ANEEAARKAALQAALNLQHNLAKIQADAMPEHYEAELEINEFPQNARWKVTHKETLGP ISEWTGAAITTRGQFFPPGRIPGPGERKLYLFIEGPTELSVKRAKAELKRVLEDFSHQ SLQLPGGTQPGRYQVL" CDS complement(2132088..2135402) /locus_tag="TCM_042754" /note="encoded by transcript variant 11; alternatively spliced; dbxref ricco:27758.m000324" /codon_start=1 /product="Dead box ATP-dependent RNA helicase, putative isoform 2" /protein_id="EOY18134.1" /db_xref="TAIR:AT1G20920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW84" /translation="MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEKHRER GRERKEREREKEKERERAREKERERDREKREREREREREREKRERERERERERERERE RERKSREREKRREYNSDDSKEERERHRKRRRRERDDDNNDDYKERESKLNREESPVRK KSGDDELEKEEKKSREEEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEESEREKRGEG NAEDEETKVGKAWTLEGESDDDEVAPTKLETNMDVDENENSNSKPDSKGIGDAMMEDG DSDNGEDKMLVTQNGGNGISEEDDEIDPLDAFMNSMVLPEVEKLSNAVVVPPTTADDD KNGNLKKDKKDGLSNGGQQPKKGSNKALGRIIPGEDSDSDYGDFENDEEDLEDEDDDE FMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKELELKLHG KDVPKPVKTWHQTGLTSKILETIRKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGK TLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKALGIRCVPVY GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRATYLVLDEADRMFDMG FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL VEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLLKHGYPCLSLHGAKD QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGR AGRKGCAITFISEDDARYAPDLVKALELSEQVLPDDLKALADGFMAKVNQGLEQAHGT GYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGVRKAGGDISQQTALA QIAAMAAASKAGTALMQNPLSSAQLLPNAVLPVSLPGVLGVSMPGTAAVVPGSGLPGL ANEEAARKAALQAALNLQHNLAKIQADAMPEHYEAELEINEFPQNARWKVTHKETLGP ISEWTGAAITTRGQFFPPGRIPGPGERKLYLFIEGPTELSVKRAKAELKRVLEDFSHQ SLQLPGGTQPGRYQVL" mobile_element 2135925..2136026 /note="source:scaffold_7_CACTA_0795 2940 3042" /mobile_element_type="transposon:TIR/CACTA" gene complement(2136008..2140329) /locus_tag="TCM_042755" /note="dbxref CacaoGD:Thecc1EG042755" mRNA complement(join(2136008..2136341,2136447..2136529, 2137420..2137498,2137690..2137784,2138497..2138629, 2138780..2138864,2139175..2139298,2139712..2139787, 2140085..2140261)) /locus_tag="TCM_042755" /product="Triosephosphate isomerase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016559001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041830t1" /inference="similar to AA sequence:ricco:27383.m000156" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1438t1; inference alignment:Newbler:10:TSA:cgbaP1_g05181t00001" mRNA complement(join(2136052..2136339,2136447..2136529, 2137420..2137498,2137690..2137784,2137869..2137924, 2138342..2138411,2138497..2138629,2138780..2138864, 2139175..2139298,2139712..2139787,2140085..2140329)) /locus_tag="TCM_042755" /product="Triosephosphate isomerase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016559001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041830t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016559001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05181t00001" CDS complement(join(2136282..2136341,2136447..2136529, 2137420..2137498,2137690..2137784,2138497..2138629, 2138780..2138864,2139175..2139298,2139712..2139787, 2140085..2140123)) /locus_tag="TCM_042755" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27383.m000156; paralog of Thecc1EG041830t1" /codon_start=1 /product="Triosephosphate isomerase isoform 2" /protein_id="EOY18136.1" /db_xref="TAIR:AT3G55440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P46225" /translation="MGRKFFVGGNWKCNGTTEQVKKIVSTLNGGEVPSQDVVEVVISP PFVFLPLVKEALRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVIIGHSERRLM LKESNEFVGDKVAYALSQGLKVIACIGETLEQREAGSTVEVVAAQTKAIAAKVSNWAD VVLAYEPVWAIGTGKVATPAQAQEVHSELRKWLQANVSPEVAASTRIIYGGSVTAANC KELAAQPDVDGFLVGGASLKSRSSLTLSSLLRSRRMPKF" CDS complement(join(2136289..2136339,2136447..2136529, 2137420..2137498,2137690..2137784,2137869..2137924, 2138342..2138411,2138497..2138629,2138780..2138864, 2139175..2139298,2139712..2139787,2140085..2140123)) /locus_tag="TCM_042755" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041830t1" /codon_start=1 /product="Triosephosphate isomerase isoform 1" /protein_id="EOY18135.1" /db_xref="Phytozome:GSVIVT01016559001" /db_xref="TAIR:AT3G55440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P46225" /translation="MGRKFFVGGNWKCNGTTEQVKKIVSTLNGGEVPSQDVVEVVISP PFVFLPLVKEALRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVIIGHSERRLM LKESNEFVGDKVAYALSQGLKVIACIGETLEQREAGSTVEVVAAQTKAIAGSRPCVSV VSFVTCLDVRFVGYFMYRTLTVTGLKDCICFFYKSKVSNWADVVLAYEPVWAIGTGKV ATPAQAQEVHSELRKWLQANVSPEVAASTRIIYGGSVTAANCKELAAQPDVDGFLVGG ASLKPEFIDIIKSAEVKKNA" mobile_element complement(2140671..2140716) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5681 5726" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2142253..2149299 /locus_tag="TCM_042757" /note="dbxref CacaoGD:Thecc1EG042757" mRNA join(2142253..2143151,2143404..2143696,2143781..2143847, 2143927..2144197,2144288..2144487,2144601..2144810, 2144924..2145037,2145127..2145237,2145357..2145521, 2145628..2145969,2146087..2146220,2146303..2146648, 2146725..2146911,2147015..2147064,2147169..2147594, 2147681..2147861,2147988..2148046,2148170..2148269, 2148362..2149299) /locus_tag="TCM_042757" /product="DNA topoisomerase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s27120.1" /inference="similar to AA sequence:Phytozome:POPTR_0009s06380.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04152t00001" mRNA join(2142367..2143151,2143404..2143696,2143781..2143847, 2143927..2144197,2144288..2144487,2144601..2144810, 2144924..2145037,2145127..2145237,2145357..2145521, 2145628..2145969,2146087..2146220,2146303..2146648, 2146725..2146911,2147015..2147064,2147169..2147594, 2147681..2147861,2147988..2148192) /locus_tag="TCM_042757" /product="Topoisomerase II isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s27120.1" /inference="similar to AA sequence:Phytozome:GSVIVT01032138001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc7t4; inference alignment:Newbler:10:TSA:cgbaP2_g04152t00001" CDS join(2142600..2143151,2143404..2143696,2143781..2143847, 2143927..2144197,2144288..2144487,2144601..2144810, 2144924..2145037,2145127..2145237,2145357..2145521, 2145628..2145969,2146087..2146220,2146303..2146648, 2146725..2146911,2147015..2147064,2147169..2147594, 2147681..2147861,2147988..2148046,2148170..2148269, 2148362..2148975) /locus_tag="TCM_042757" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA topoisomerase 2 isoform 1" /protein_id="EOY18137.1" /db_xref="Phytozome:POPTR_0009s06380.1" /db_xref="TAIR:AT3G23890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O24308" /translation="MVADSKLPLQSSNNANMKASKTIEETYQKKTQLEHILLRPDTYI GSIEQHTQRLWVYENDEMVHRDIKYVPGLYKIFDEILVNAADNKQRDPSMDSVKVVID AEQNLISVYNNGDGVPVEVHQEEGVYVPELIFGHLLTSSNYDDTVKKTTGGRNGYGAK LTNIFSTEFIIETADGKRQKKYKQVFSNNMGKKSEPVISKCKEAENWTKVTFKPDLAK FNMTHLEEDVVALMKKRVFDVAGCLGKTVKVELNGKRVPVKSFLDYVSLYLSAASKTK TEPLPRLLEKVNERWEVGVSLSDGQFQQVSFVNGIATIKGGTHVDYVTNQISNYVMNI VNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFL KKVAKCGVVDNLLSWAEFKHSKDLKKTDGAKTGSIRGIPKLDDANEAGGRNSDKCTLI LTEGDSAKALAVAGLAVVGRNHYGVFPLRGKLLNVREASHKQLMDNAEIQNLKRILGL QQGKEYSNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFITP IVKATHKTKGVLSFYSMPEYEFWKESLGGNAKGWSIKYYKGLGTSTSKEGKDYFKNLD KHRKEFVWQDEQDGEAIELAFSKKKIEARKNWLRQFEPGTHLDQSQKLIKYSEFINKE LILFSMADLQRSIPSMIDGLKPGQRKILFCSFKRNFVKEAKVAQFSGYVSEHSAYHHG EQSLASTIVGMAQDFVGSNNINLLNPGGQFGTRNQGGKDAASARYIFTNLSPITRYLF PKDDDGLLDYLNEDGQSIEPIWYVPIIPMVLVNGSEGIGTGWSSYIPNYNPRDIVANV RRLLNGEQMEPMHPWYRGFKGNIEKTASKEAGVTYTITGIIEEVDETTLRITELPVRR WTQDYREFLESIITGNDPFIKEFRQYSDDTTVEFEVILTEENMMVAKQEGLLKKFKLT TTISTSNMHLFDSKGMIKKYDTPEQILEEFFHLRFEFYEKRKKLLLDNLEMELLKMEN KVRFILGVVKGEIIVNNRKRADLFLELQTKGFTPFPKKAKTVEVAVAGATDDTEETEE NSEVSAKGLQASDYDYLLSMAIGSLTLEKVQELCADRDKLQQEVEDLRKATPKSLWLK DLDNLEIQLDEQDKAAQAEEAAKLVKGRGEAGKRAQRQAPKIPRKINKKEKNAETVTE TTDISSSSAMETETAPAAVKPKGRGGSRKAKKDDSDDDDDEDFGIPDLRERLAKYNLD SSPDHSAAMETEVPQVPAGKKEPSKRAAAARKKPATSLSEISESIGEIDINDEDLEVV EVAAAAAPAGKKGGRKPAANSKAAAKPPAAAKKRGPAAAGKKSQQQKLLTEMLKPAED SGISPEKKVRKMRASPFNKKSGSVLGRVGKELESTTDSEETFGSSSMSADTEEVTEIV PARPRPQRTNRKQTTYVLSDSETDNATDDSDFEEDED" CDS join(2142600..2143151,2143404..2143696,2143781..2143847, 2143927..2144197,2144288..2144487,2144601..2144810, 2144924..2145037,2145127..2145237,2145357..2145521, 2145628..2145969,2146087..2146220,2146303..2146648, 2146725..2146911,2147015..2147064,2147169..2147594, 2147681..2147861,2147988..2148073) /locus_tag="TCM_042757" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Topoisomerase II isoform 3" /protein_id="EOY18139.1" /db_xref="Phytozome:GSVIVT01032138001" /db_xref="TAIR:AT3G23890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P30182" /translation="MVADSKLPLQSSNNANMKASKTIEETYQKKTQLEHILLRPDTYI GSIEQHTQRLWVYENDEMVHRDIKYVPGLYKIFDEILVNAADNKQRDPSMDSVKVVID AEQNLISVYNNGDGVPVEVHQEEGVYVPELIFGHLLTSSNYDDTVKKTTGGRNGYGAK LTNIFSTEFIIETADGKRQKKYKQVFSNNMGKKSEPVISKCKEAENWTKVTFKPDLAK FNMTHLEEDVVALMKKRVFDVAGCLGKTVKVELNGKRVPVKSFLDYVSLYLSAASKTK TEPLPRLLEKVNERWEVGVSLSDGQFQQVSFVNGIATIKGGTHVDYVTNQISNYVMNI VNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFL KKVAKCGVVDNLLSWAEFKHSKDLKKTDGAKTGSIRGIPKLDDANEAGGRNSDKCTLI LTEGDSAKALAVAGLAVVGRNHYGVFPLRGKLLNVREASHKQLMDNAEIQNLKRILGL QQGKEYSNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFITP IVKATHKTKGVLSFYSMPEYEFWKESLGGNAKGWSIKYYKGLGTSTSKEGKDYFKNLD KHRKEFVWQDEQDGEAIELAFSKKKIEARKNWLRQFEPGTHLDQSQKLIKYSEFINKE LILFSMADLQRSIPSMIDGLKPGQRKILFCSFKRNFVKEAKVAQFSGYVSEHSAYHHG EQSLASTIVGMAQDFVGSNNINLLNPGGQFGTRNQGGKDAASARYIFTNLSPITRYLF PKDDDGLLDYLNEDGQSIEPIWYVPIIPMVLVNGSEGIGTGWSSYIPNYNPRDIVANV RRLLNGEQMEPMHPWYRGFKGNIEKTASKEAGVTYTITGIIEEVDETTLRITELPVRR WTQDYREFLESIITGNDPFIKEFRQYSDDTTVEFEVILTEENMMVAKQEGLLKKFKLT TTISTSNMHLFDSKGMIKKYDTPEQILEEFFHLRFEFYEKRKKLLLDNLEMELLKMEN KVRFILGVVKGEIIVNNRKRADLFLELQTKGFTPFPKKAKTVEVAVAGATDDTEETEE NSEVSAKGLQASDYDYLLSMAIGSLTLEKVQELCADRDKLQQEVEDLRKATPKSLWLK DLDNLEIQLDEQDKAAQAEEAAKLVKGRGEAGKRAQRQAPKIPRKINKKEKNAETVTE TTDISSSSAMETETAPAAVKPKGRGGSRKAKKVLCCFLSG" mRNA join(2142964..2143151,2143404..2143696,2143781..2143847, 2143927..2144197,2144288..2144487,2144601..2144810, 2144924..2145037,2145127..2145237,2145357..2145521, 2145628..2145969,2146087..2146220,2146303..2146648, 2146725..2146911,2147015..2147064,2147169..2147594, 2147681..2147861,2147985..2148046,2148170..2148269, 2148362..2149262) /locus_tag="TCM_042757" /product="DNA topoisomerase 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s27120.1" /inference="similar to AA sequence:Phytozome:POPTR_0009s06380.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1436t2; inference alignment:Newbler:10:TSA:cgbaP2_g04152t00001" mRNA join(<2142997..2143151,2143404..2143696,2143781..2143847, 2143927..2144197,2144288..2144487,2144601..2144810, 2144924..2145037,2145127..2145237,2145357..2145521, 2145628..2145969,2146087..2146220,2146303..2146632, 2147294..2147594,2147681..2147861,2147988..2148046, 2148170..>2148195) /locus_tag="TCM_042757" /product="DNA topoisomerase 2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s27120.1" /inference="similar to AA sequence:Phytozome:GSVIVT01032138001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc19052t1; inference alignment:Newbler:10:TSA:cgbaP2_g04152t00001" CDS join(<2142999..2143151,2143404..2143696,2143781..2143847, 2143927..2144197,2144288..2144487,2144601..2144810, 2144924..2145037,2145127..2145237,2145357..2145521, 2145628..2145969,2146087..2146220,2146303..2146632, 2147294..2147594,2147681..2147861,2147988..2148046, 2148170..>2148193) /locus_tag="TCM_042757" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="DNA topoisomerase 2 isoform 4" /protein_id="EOY18140.1" /db_xref="Phytozome:GSVIVT01032138001" /db_xref="TAIR:AT3G23890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P30182" /translation="FGHLLTSSNYDDTVKKTTGGRNGYGAKLTNIFSTEFIIETADGK RQKKYKQVFSNNMGKKSEPVISKCKEAENWTKVTFKPDLAKFNMTHLEEDVVALMKKR VFDVAGCLGKTVKVELNGKRVPVKSFLDYVSLYLSAASKTKTEPLPRLLEKVNERWEV GVSLSDGQFQQVSFVNGIATIKGGTHVDYVTNQISNYVMNIVNKKNKNANVKAHNVKN HLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVAKCGVVDNLLSWAE FKHSKDLKKTDGAKTGSIRGIPKLDDANEAGGRNSDKCTLILTEGDSAKALAVAGLAV VGRNHYGVFPLRGKLLNVREASHKQLMDNAEIQNLKRILGLQQGKEYSNVKSLRYGHL MIMTDQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFITPIVKATHKTKGVLSFYSM PEYEFWKESLGGNAKGWSIKYYKGLGTSTSKEGKDYFKNLDKHRKEFVWQDEQDGEAI ELAFSKKKIEARKNWLRQFEPGTHLDQSQKLIKYSEFINKELILFSMADLQRSIPSMI DGLKPGQRKILFCSFKRNFVKEAKVAQFSGYVSEHSAYHHGEQSLASTIVGMAQDFVG SNNINLLNPGGQFGTRNQGGKDAASARYIFTNLSPITRYLFPKDDDGLLDYLNEDGQS IEPIWYVPIIPMVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEQMEPMHPWYR GFKGNIEKTASKEAGVTYTITGIIEEVDETTLRITELPVRRWTQDYREFLESIITGKL QTKGFTPFPKKAKTVEVAVAGATDDTEETEENSEVSAKGLQASDYDYLLSMAIGSLTL EKVQELCADRDKLQQEVEDLRKATPKSLWLKDLDNLEIQLDEQDKAAQAEEAAKLVKG RGEAGKRAQRQAPKIPRKINKKEKNAETVTETTDISSSSAMETETAPAAVKPKGRGGS RKAKKDDSDDDDD" CDS join(2143419..2143696,2143781..2143847,2143927..2144197, 2144288..2144487,2144601..2144810,2144924..2145037, 2145127..2145237,2145357..2145521,2145628..2145969, 2146087..2146220,2146303..2146648,2146725..2146911, 2147015..2147064,2147169..2147594,2147681..2147861, 2147985..2148046,2148170..2148269,2148362..2148975) /locus_tag="TCM_042757" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA topoisomerase 2 isoform 2" /protein_id="EOY18138.1" /db_xref="Phytozome:POPTR_0009s06380.1" /db_xref="TAIR:AT3G23890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H4G2" /translation="MGKKSEPVISKCKEAENWTKVTFKPDLAKFNMTHLEEDVVALMK KRVFDVAGCLGKTVKVELNGKRVPVKSFLDYVSLYLSAASKTKTEPLPRLLEKVNERW EVGVSLSDGQFQQVSFVNGIATIKGGTHVDYVTNQISNYVMNIVNKKNKNANVKAHNV KNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVAKCGVVDNLLSW AEFKHSKDLKKTDGAKTGSIRGIPKLDDANEAGGRNSDKCTLILTEGDSAKALAVAGL AVVGRNHYGVFPLRGKLLNVREASHKQLMDNAEIQNLKRILGLQQGKEYSNVKSLRYG HLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFITPIVKATHKTKGVLSFY SMPEYEFWKESLGGNAKGWSIKYYKGLGTSTSKEGKDYFKNLDKHRKEFVWQDEQDGE AIELAFSKKKIEARKNWLRQFEPGTHLDQSQKLIKYSEFINKELILFSMADLQRSIPS MIDGLKPGQRKILFCSFKRNFVKEAKVAQFSGYVSEHSAYHHGEQSLASTIVGMAQDF VGSNNINLLNPGGQFGTRNQGGKDAASARYIFTNLSPITRYLFPKDDDGLLDYLNEDG QSIEPIWYVPIIPMVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEQMEPMHPW YRGFKGNIEKTASKEAGVTYTITGIIEEVDETTLRITELPVRRWTQDYREFLESIITG NDPFIKEFRQYSDDTTVEFEVILTEENMMVAKQEGLLKKFKLTTTISTSNMHLFDSKG MIKKYDTPEQILEEFFHLRFEFYEKRKKLLLDNLEMELLKMENKVRFILGVVKGEIIV NNRKRADLFLELQTKGFTPFPKKAKTVEVAVAGATDDTEETEENSEVSAKGLQASDYD YLLSMAIGSLTLEKVQELCADRDKLQQEVEDLRKATPKSLWLKDLDNLEIQLDEQDKA AQAEEAAKLVKGRGEAGKRAQRQAPKIPRKINKKEKNAETVTETTDISSSSAMETAET APAAVKPKGRGGSRKAKKDDSDDDDDEDFGIPDLRERLAKYNLDSSPDHSAAMETEVP QVPAGKKEPSKRAAAARKKPATSLSEISESIGEIDINDEDLEVVEVAAAAAPAGKKGG RKPAANSKAAAKPPAAAKKRGPAAAGKKSQQQKLLTEMLKPAEDSGISPEKKVRKMRA SPFNKKSGSVLGRVGKELESTTDSEETFGSSSMSADTEEVTEIVPARPRPQRTNRKQT TYVLSDSETDNATDDSDFEEDED" mobile_element complement(2149304..2149521) /note="source:scaffold_8_CACTA_0858 14508 14739" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2152415..2152809 /note="source:INTACT135F_F90_scaffold_2-int 13600 14001" /mobile_element_type="retrotransposon:LTR/Copia" gene 2153310..2156607 /locus_tag="TCM_042758" /note="dbxref CacaoGD:Thecc1EG042758" mRNA join(2153310..2153405,2153502..2153576,2153669..2153783, 2154315..2154414,2154499..2154529,2154611..2154700, 2155663..2155815,2156010..2156289) /locus_tag="TCM_042758" /product="PSF2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g06270.1" /inference="similar to AA sequence:TAIR:AT3G12530.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12099t00001; alternateUTRof:Thecc1EG042758t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4041t1" mRNA join(2153343..2153405,2153502..2153576,2153669..2153783, 2154315..2154414,2154499..2154529,2154611..2154700, 2155663..2155815,2156010..2156607) /locus_tag="TCM_042758" /product="PSF2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g06270.1" /inference="similar to AA sequence:TAIR:AT3G12530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4041t1" CDS join(2153358..2153405,2153502..2153576,2153669..2153783, 2154315..2154414,2154499..2154529,2154611..2154700, 2155663..2155815,2156010..2156027) /locus_tag="TCM_042758" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="PSF2 isoform 1" /protein_id="EOY18141.1" /db_xref="TAIR:AT3G12530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7A8" /translation="MAGQSDPHISLFSAEEVEFMAEDELIEIVPNMRMDPLNFICGDF GPFLPQIATQVPMWLAVALKKRGKCAIRPPLWMSVENLTKVLEGERDSQGAFQVLPFH YVEISRLLFDHARDDIPDMYMVRSLIEDIRDVRVHKVETSLEKFSGTSAVKIPNLSAM EVNIIRPFVGRALQAFYKHDNPEKIPDVDRASSGQTRVANNEPRRPLRR" CDS join(2153358..2153405,2153502..2153576,2153669..2153783, 2154315..2154414,2154499..2154529,2154611..2154700, 2155663..2155815,2156010..2156027) /locus_tag="TCM_042758" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="PSF2 isoform 1" /protein_id="EOY18142.1" /db_xref="TAIR:AT3G12530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7A8" /translation="MAGQSDPHISLFSAEEVEFMAEDELIEIVPNMRMDPLNFICGDF GPFLPQIATQVPMWLAVALKKRGKCAIRPPLWMSVENLTKVLEGERDSQGAFQVLPFH YVEISRLLFDHARDDIPDMYMVRSLIEDIRDVRVHKVETSLEKFSGTSAVKIPNLSAM EVNIIRPFVGRALQAFYKHDNPEKIPDVDRASSGQTRVANNEPRRPLRR" mobile_element complement(2159593..2159674) /note="source:INTACT433_F212_scaffold_1-int 3060 3137" /mobile_element_type="retrotransposon:LTR/Copia" gene 2161163..2164018 /locus_tag="TCM_042759" /note="dbxref CacaoGD:Thecc1EG042759" mRNA join(2161163..2161785,2162727..2162943,2163406..2163896, 2163989..2164010) /locus_tag="TCM_042759" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g52870.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21120.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc419t5" mRNA join(2161256..2161785,2162727..2162756,2163408..2163896, 2163989..2164018) /locus_tag="TCM_042759" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042766t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8110t8" CDS join(2161540..2161785,2162727..2162943,2163406..2163893) /locus_tag="TCM_042759" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18143.1" /db_xref="Phytozome:POPTR_0010s21120.1" /db_xref="TAIR:AT2G39650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTI6" /translation="MMECSVWVAAGDHKNSNSNSNNNNSNNNNNLWGLSHESEHDLAL MVSDFLENNGGSAGGDSWCSSDSESGFSDLLHLSDKISYYKHPVGQYEIDLLSVVHSL ILSVSETDLHFVKSGPCNASCIRFFLVKLLRLSGYDAAVCASRWQGSGKVPGGDHEYI DVINYNNGSSERLIIDIDFRSHFEIARAVDSYDRILNSLPVVYVGSLTRLKQLLQLMV DAARSSLKQNSMPFPPWRSLAYLQAKWQSPYQRQFTPYEHDINGNVSSDHKQCNGHLK GLQASLQSELEAERLLKPINIDSHWRLKLDRRRHSSFRAL" CDS join(2161540..2161785,2162727..2162756,2163408..2163893) /locus_tag="TCM_042759" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042766t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18144.1" /db_xref="TAIR:AT2G39650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTI6" /translation="MMECSVWVAAGDHKNSNSNSNNNNSNNNNNLWGLSHESEHDLAL MVSDFLENNGGSAGGDSWCSSDSESGFSDLLHLSDKISYYKHPVGQYEDHEYIDVINY NNGSSERLIIDIDFRSHFEIARAVDSYDRILNSLPVVYVGSLTRLKQLLQLMVDAARS SLKQNSMPFPPWRSLAYLQAKWQSPYQRQFTPYEHDINGNVSSDHKQCNGHLKGLQAS LQSELEAERLLKPINIDSHWRLKLDRRRHSSFRAL" mobile_element 2161594..2161635 /note="source:scaffold_8_CACTA_0866 1272 1313" /mobile_element_type="transposon:TIR/CACTA" gene complement(2165105..2166108) /locus_tag="TCM_042761" /note="dbxref CacaoGD:Thecc1EG042761" mRNA complement(join(2165105..2165405,2165677..2166108)) /locus_tag="TCM_042761" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30003.m000341" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042767t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc11879t3" mobile_element 2165165..2165228 /note="source:CACAO_M_E5326_F22_scaffold_2 3440 3508" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(2165244..2165405,2165677..2165910)) /locus_tag="TCM_042761" /note="paralog of Thecc1EG042767t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18145.1" /translation="MVKGSRASSSSSANYARQWSPLTLATLRNIRERPQQKCNKRKPG STVIFRDQSDYGYGWLLPGWVAEERRMRTGRRYTYYYDPWGRQYTTKREVLYGIVENA KVQLFNPVTILGGIFVSLDQWHANWCGRT" gene 2167720..2176849 /locus_tag="TCM_042762" /note="dbxref CacaoGD:Thecc1EG042762" mRNA join(2167720..2168054,2168874..2169090,2169530..2169666, 2170926..2171015,2171848..2171917,2176238..2176849) /locus_tag="TCM_042762" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g10130.2" /inference="similar to AA sequence:Phytozome:GSVIVT01016558001" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" mobile_element complement(2167965..2168305) /note="source:CACAO_M_E85273_F192_scaffold_10 1 341" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2168434..2168818 /note="source:CACAO_M_S_E119852_F182_scaffold_9 1 383" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(2168943..2169090,2169530..2169666,2170926..2171015, 2171848..2171917,2176238..2176686) /locus_tag="TCM_042762" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18146.1" /db_xref="Phytozome:GSVIVT01016558001" /db_xref="TAIR:AT2G39650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTI6" /translation="MSETDLHFVKSGSCNASCIGFSLVKLLRLSGYDAAVCASRGQGS GKVPGGDHEYIDVINYDKGSSERLIIDIDFRSHFEIARAVDSYDRILNSLPNFVFILR FHPISYMMKPIPINSKTQRIVTEYACGALQRPNQAAASHSHDRIDHAYQIFSNEQNLI WVLTTLQRIHDNQVIYAGDHDYIDVINYNKGGSERLIVDIDFRSHFEIARGVDCYDRI LNSLPVVYVGSLTRLKQSLQLMVDAAGSSLKQNSMPFPPWRSLAYLQAKWQRPTRDNL LPVNMILKTMFLLTINSATGI" mobile_element complement(2169922..2170674) /note="source:CACAO_M_S_E145584_F257_scaffold_10 1 753" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2175135..2175216 /note="source:scaffold_1_CACTA_0016 6349 6430" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2175382..2176074 /note="source:scaffold_4_CACTA_0482 8158 8860" /mobile_element_type="transposon:TIR/CACTA" gene complement(2177853..2178878) /locus_tag="TCM_042764" /note="dbxref CacaoGD:Thecc1EG042764" mRNA complement(join(2177853..2178014,2178134..2178219, 2178489..2178713,2178792..2178878)) /locus_tag="TCM_042764" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042767t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(2177972..2178014,2178134..2178219, 2178489..2178713,2178792..2178800)) /locus_tag="TCM_042764" /note="paralog of Thecc1EG042767t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18147.1" /translation="MNEGETKTHVKLKQPCQAVVAADASHLRNIRERPRQRRHRRKPG STVTYRDQSDHGYGWLLPGWVAEERRMLTGRLYTYYYDRWGRQYNTKREVLYRLAVCG LILVEVHSEAADDDRRSC" mobile_element 2181490..2181563 /note="source:INTACT383F_F354_scaffold_3-int 4370 4444" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 2181504..2181572 /note="source:CACAO_PIF_E8_scaffold_1 331 402" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(2182532..2183278) /locus_tag="TCM_042765" /note="dbxref CacaoGD:Thecc1EG042765" mRNA complement(2182532..2183278) /locus_tag="TCM_042765" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.49 coverage" CDS complement(2183057..2183266) /locus_tag="TCM_042765" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18148.1" /translation="MASLSRTMASTLTPLGSFSSMWDFALGVSLRYGTLWLYPLRALS RKCDNHVHARTVRSSPTSIRIHCLY" mobile_element 2183461..2183843 /note="source:scaffold_1_CACTA_0016 1413 1712" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2183842..2184249 /note="source:scaffold_1_CACTA_0016 2027 2438" /mobile_element_type="transposon:TIR/CACTA" gene 2185053..2186300 /locus_tag="TCM_042766" /note="dbxref CacaoGD:Thecc1EG042766" mRNA join(2185053..2185147,2185586..2185730,2185824..2186300) /locus_tag="TCM_042766" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g10130.2.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042759t1" /inference="similar to AA sequence:ricco:30003.m000342" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc401t10_C2" CDS join(2185116..2185147,2185586..2185730,2185824..2186123) /locus_tag="TCM_042766" /note="dbxref ricco:30003.m000342; paralog of Thecc1EG042759t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18149.1" /translation="MIRSEHCGDSLIFVLLHLIIDNTVCGIYASDHKYIDEINYNKGS SERLIIDIDFRSHFELMVDAAGSSLKQNSMPFPPWRSLAYLQAKWQSPYQRQSTPNEH DLEDNVSSDNKQCNGHLRGLHSSPQSELEAERLLKPMNIDSHCRLKLWITNYTEND" gene complement(2186647..2191118) /locus_tag="TCM_042767" /note="dbxref CacaoGD:Thecc1EG042767" mRNA complement(join(2186647..2186873,2186972..2187078, 2187348..2187676,2189567..2189821,2190017..2190251, 2191039..2191118)) /locus_tag="TCM_042767" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30003.m000341.3" /inference="similar to AA sequence:ricco:29929.m004535" /note="quality class is medium, express is medium, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc10262t1" CDS complement(join(2186989..2187078,2187348..2187676, 2189567..2189821,2190017..2190251)) /locus_tag="TCM_042767" /note="dbxref ricco:29929.m004535" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18150.1" /translation="MLKRFHPVKDDHLLRSDSETESDDNNLDDHVHGENLHRKRNNRE KTIEKECKNSNEKEITLDNGNNSQDMEDGFKEEPENIVMKDAKEYQEYMKQLPVPDAL ELSSSLVLPFITWQGLAESMKHKYEQPLHYLTHILLRQWDESRDSTKNNESIKPIGNV IHPTPIYSAMNEMENNHQRKKKTIALSFQSLAVMAKARGRPRRTSSSSSHARQWSPLT LATLRNMRERPCQKCHTRKPGSTVTYRDQSDHGYGWLLPGWVAEERRMLTGRLYTYYY DPWGRLYNTKREVLYRWAVCGLVLVE" mobile_element complement(2191861..2191964) /note="source:scaffold_6_CACTA_0703 3446 3554" /mobile_element_type="transposon:TIR/CACTA" gene 2192233..2194119 /locus_tag="TCM_042768" /note="dbxref CacaoGD:Thecc1EG042768" mRNA join(2192233..2192698,2192804..2193391,2193486..2193759, 2193853..2194119) /locus_tag="TCM_042768" /product="O-Glycosyl hydrolases family 17 protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G66855.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038357t1" /inference="similar to AA sequence:ricco:30003.m000339" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1358t1" CDS join(2192264..2192698,2192804..2193391,2193486..2193759, 2193853..2193878) /locus_tag="TCM_042768" /note="dbxref ricco:30003.m000339; paralog of Thecc1EG038357t1" /codon_start=1 /product="O-Glycosyl hydrolases family 17 protein, putative" /protein_id="EOY18151.1" /db_xref="TAIR:AT3G55430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMH9" /translation="MGILLLATFLHLVTSATALGVNYGMIADNLPSPYEVANFIKTKT IFDSVKIFDTNPDVLRAFANTDISVTVTVANGQIPSLTNVRAARRWVNNHIRPFYPQT KIKYISVGNEILLFNVQDQINNLVPAMKSLHLALAKAGIRGIKVTTAHALNIFNGDSV PSLARFRQDYAKSFFAPLLLFLRRTKSPFMINPYPYFELNAMGNKLDYALFKRNPGLF DKHSGKTYTNALDALLDKTHSAMSAIGCGDVDIVIGETGWPSQGDGGNLVATVGNALS YNGNLVREILSGNGTPLMPNRRFETYIFALFNENQKPGPLAERNWGLFRPDFTPVYNV GVLRNGQPMPRPAIRAPSSKKFCVPKPGVTDAQLQSNLDYACSQGANCSPIQPGGPCA QPGTVRSRATFAMNSYYRNKGQADNACDFSGTAQITTADPSYGNCHYT" gene 2197923..2198919 /locus_tag="TCM_042769" /note="dbxref CacaoGD:Thecc1EG042769" mRNA 2197923..2198919 /locus_tag="TCM_042769" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05590.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05590.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11811t00001" CDS 2198076..2198744 /locus_tag="TCM_042769" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18152.1" /db_xref="Phytozome:POPTR_0008s05590.1" /db_xref="TAIR:AT3G55420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BXV3" /translation="MEEKEKNKKNKKQKHQHPNDQTTKPASDFSFKPSSEVKGLRFGG QFIVKSFTIRRARPLELLKLLDFPPISKSNSNKLPFPSTTAFLPTNFTILAHHAWHTL TLGLGTKKSKVLLFVFESEAMKLAVDRIWPPEIPLGEVNKKLIRGLTGCEMARFKFRK GCITFYVYAVRKVGNMGFSCADDLRTILQSVVALKDFLDHTAMLAMPNQRSISYCPPV AMAH" gene 2200913..2205042 /locus_tag="TCM_042770" /note="dbxref CacaoGD:Thecc1EG042770" mRNA join(2200913..2201119,2201207..2201255,2201707..2201813, 2202403..2202448,2202649..2202783,2202916..2203005, 2203079..2203210,2203310..2203393,2203540..2203604, 2204285..2205042) /locus_tag="TCM_042770" /product="Nucleotide-diphospho-sugar transferases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05580.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21150.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05123t00001" CDS join(2201007..2201119,2201207..2201255,2201707..2201813, 2202403..2202448,2202649..2202783,2202916..2203005, 2203079..2203210,2203310..2203393,2203540..2203604, 2204285..2204471) /locus_tag="TCM_042770" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein" /protein_id="EOY18153.1" /db_xref="Phytozome:POPTR_0010s21150.1" /db_xref="TAIR:AT2G39630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SLN0" /translation="MGFLLMTVEYLAALILIVVFGLVSIIVFEAYRRRHNNAHVEAPA IFEDPKSLKQVPCPIVFDPAEKYLSLIFPAFNEEHRLPGALDETMNYLQQRVAKDKSF SYEVLIIDDGSKDGTKRVAFDFVKKYGVDNVRVILLGKNHGKGEAIRKGMLHSRGELL LMLDADGATKVTDLEKLENQIHVVARKDTHCEDSAASDTNFRISDVPIVAFGSRAHLE EKALATRKWYRNFLMKGFHLVVLLAAGPGIRDTQCGFKMFTRSAARKLFTNIRLKRWC FDVELVFLCKWFSIPMLEISVNWSEIPGSKVNPLSIPNMLWELALMSVGYRTRMWKIN S" gene 2203581..2207117 /locus_tag="TCM_042771" /note="dbxref CacaoGD:Thecc1EG042771" mRNA join(2203581..2203604,2205754..2205899,2205988..2206110, 2206199..2206360,2206440..2207008) /locus_tag="TCM_042771" /product="ENTH/VHS family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024977001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041849t1" /inference="similar to AA sequence:ricco:30003.m000333" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1344t1; alternateUTRof:Thecc1EG042771t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1344t1" mRNA join(2205302..2205334,2205754..2205899,2205988..2206110, 2206199..2206360,2206440..2207117) /locus_tag="TCM_042771" /product="ENTH/VHS family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024977001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041849t1" /inference="similar to AA sequence:ricco:30003.m000333" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1344t1" CDS join(2205793..2205899,2205988..2206110,2206199..2206360, 2206440..2206839) /locus_tag="TCM_042771" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30003.m000333; paralog of Thecc1EG041849t1" /codon_start=1 /product="ENTH/VHS family protein, putative isoform 1" /protein_id="EOY18154.1" /db_xref="TAIR:AT3G46540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SXX7" /translation="MGSLVFHEFKRQASFFLKEKIKTARLALTDVTPVELLTEEATDG NMLSPDACSMGAISRAAFEVDDYWRIVDILHKRLSKFDKKNWRASYNALVLLEHLLTH GPLRVAEEFQNHRDSIKELGNFQYIDEKGFNWGLSVGKLSEKILMLLENESFLKEERA RARKLTMGIKGFGSFSHLSSSKDQRFNSFSNHGRSCSQEDCFLEFKENLSSKEGAGLI EQDYNQNMSAPEKLEINGDGFDREREHPFCEDEQETAESLLSSTM" CDS join(2205793..2205899,2205988..2206110,2206199..2206360, 2206440..2206839) /locus_tag="TCM_042771" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30003.m000333; paralog of Thecc1EG041849t1" /codon_start=1 /product="ENTH/VHS family protein, putative isoform 1" /protein_id="EOY18155.1" /db_xref="TAIR:AT3G46540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SXX7" /translation="MGSLVFHEFKRQASFFLKEKIKTARLALTDVTPVELLTEEATDG NMLSPDACSMGAISRAAFEVDDYWRIVDILHKRLSKFDKKNWRASYNALVLLEHLLTH GPLRVAEEFQNHRDSIKELGNFQYIDEKGFNWGLSVGKLSEKILMLLENESFLKEERA RARKLTMGIKGFGSFSHLSSSKDQRFNSFSNHGRSCSQEDCFLEFKENLSSKEGAGLI EQDYNQNMSAPEKLEINGDGFDREREHPFCEDEQETAESLLSSTM" mobile_element 2207629..2207712 /note="source:scaffold_8_CACTA_0858 13999 14080" /mobile_element_type="transposon:TIR/CACTA" gene complement(2208896..2211970) /locus_tag="TCM_042772" /note="dbxref CacaoGD:Thecc1EG042772" mRNA complement(join(2208896..2209399,2209493..2210106, 2210479..2210872,2211001..2211070,2211682..2211970)) /locus_tag="TCM_042772" /product="Actin-11 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024911t1" /inference="similar to AA sequence:frave:gene26612" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4124t1" mRNA complement(join(2209020..2209269,2209493..2210106, 2210479..2210872,2211001..2211070,2211682..2211773)) /locus_tag="TCM_042772" /product="Actin-11 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024911t1" /inference="similar to AA sequence:frave:gene26612" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1572t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4124t1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc5819t2" CDS complement(join(2209195..2209269,2209493..2210106, 2210479..2210872,2211001..2211060)) /locus_tag="TCM_042772" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene26612; paralog of Thecc1EG024911t1" /codon_start=1 /product="Actin-11 isoform 2" /protein_id="EOY18157.1" /db_xref="TAIR:AT3G12110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P53496" /translation="MAEAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG VSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKL AYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGI HETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP PERKYSVWIGGSILASLSTFQQLGTLLCSSFVIHLCLFSCWSDDEL" CDS complement(join(2209334..2209399,2209493..2210106, 2210479..2210872,2211001..2211060)) /locus_tag="TCM_042772" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene26612; paralog of Thecc1EG024911t1" /codon_start=1 /product="Actin-11 isoform 1" /protein_id="EOY18156.1" /db_xref="TAIR:AT3G12110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P53496" /translation="MAEAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG VSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKL AYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGI HETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP PERKYSVWIGGSILASLSTFQQMWIAKTEYDESGPSIVHRKCF" gene complement(2213133..2216228) /locus_tag="TCM_042773" /note="dbxref CacaoGD:Thecc1EG042773" mRNA complement(join(2213133..2213703,2214137..2214894, 2215811..2215926)) /locus_tag="TCM_042773" /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30003.m000326" /inference="similar to AA sequence:ricco:30003.m000326" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc260t7; inference alignment:Newbler:10:TSA:cgbaB_g10025t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc260t6" mRNA complement(join(2213265..2213703,2214137..2214891, 2215815..2215854,2215993..2216228)) /locus_tag="TCM_042773" /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30003.m000326" /inference="similar to AA sequence:ricco:30003.m000326" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10025t00001" CDS complement(join(2213635..2213703,2214137..2214891, 2215815..2215854,2215993..2216061)) /locus_tag="TCM_042773" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30003.m000326" /codon_start=1 /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein isoform 1" /protein_id="EOY18158.1" /db_xref="TAIR:AT3G55360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2U2" /translation="MKVTLVSRSGREVIKGGLELHDSATVADLQEAIHKRTKKFYPSR QRLTLPVPPGSKERPVVLNYKKGLKDYCDGNQNNITVVFKDLGPQVSYPTLFFFEYLG PLILYPTFYYFPVYQFFGYKVERVIHPVQTYALYYWCFHYFKRIMETFFIHRFSHATS PLSNVFRNCAYYWTFGAYIAYYVNHPLYTPVSDLQMKIGFGFGLICQLANFYCHIILK NLRSPDGSGGYQIPSGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYVFLVVATSIMT NWALAKHRRLKKLFDGKEGRPKYPRRWVILPPFL" CDS complement(join(2213635..2213703,2214137..2214894, 2215811..2215910)) /locus_tag="TCM_042773" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30003.m000326" /codon_start=1 /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein isoform 2" /protein_id="EOY18159.1" /db_xref="TAIR:AT3G55360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2U2" /translation="MKEKKGNLLFFFFFFFSCRPLWLICRRQFTKEVTAKKFYPSRQR LTLPVPPGSKERPVVLNYKKGLKDYCDGNQNNITVVFKDLGPQVSYPTLFFFEYLGPL ILYPTFYYFPVYQFFGYKVERVIHPVQTYALYYWCFHYFKRIMETFFIHRFSHATSPL SNVFRNCAYYWTFGAYIAYYVNHPLYTPVSDLQMKIGFGFGLICQLANFYCHIILKNL RSPDGSGGYQIPSGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYVFLVVATSIMTNW ALAKHRRLKKLFDGKEGRPKYPRRWVILPPFL" mobile_element 2216025..2216072 /note="source:CACAO_M_E44098_F74_scaffold_5 1988 2035" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2216243..2217118) /locus_tag="TCM_042774" /note="dbxref CacaoGD:Thecc1EG042774" mRNA complement(2216243..2217118) /locus_tag="TCM_042774" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS complement(2216702..2216980) /locus_tag="TCM_042774" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18160.1" /translation="MLLLSCDIEFGRKLGKENEGMENGTCGNREVALPSGIWISIYWF VHVFFVYFPVTPWPQHHPCLSTGITMLNRGRERRGVGWLRLVAPAAAT" gene complement(2217363..2219498) /locus_tag="TCM_042775" /note="dbxref CacaoGD:Thecc1EG042775" mRNA complement(join(2217363..2219342,2219401..2219498)) /locus_tag="TCM_042775" /product="DNA/RNA-binding protein Kin17, conserved region" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21200.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21200.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07690t00001" CDS complement(2218158..2219324) /locus_tag="TCM_042775" /codon_start=1 /product="DNA/RNA-binding protein Kin17, conserved region" /protein_id="EOY18161.1" /db_xref="Phytozome:POPTR_0010s21200.1" /db_xref="TAIR:AT1G55460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTJ4" /translation="MGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCH CMSESHQRQMQIFGQNPDRIVSGYSEEFEQNFLDLMKRSHRFSRVAATVVYNEFIHDR HHVHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDKDSETIFKEKMKNKRIK LDMVEEEKQEREIQKQIEKAGQLKAPLESEENEKKAVMKELNLESGVKIGFSLGGGNV KGESSSSARLVFEEEENEKKKKNNQRKENGGRKNALEELMREEEKAKERSNRKDYWLC EGIIVKVMSKALAEKGYYKQKGFVRKVIDKYVGEIEMFESKHALRVDQEELETVIPQI GGLVRIVNGAYRGSNARLLGVDTEKFCAKVQIEKGVYDGRVIKAIEYEDICKVV" mobile_element 2220091..2220119 /note="source:scaffold_5_CACTA_0599 7159 7187" /mobile_element_type="transposon:TIR/CACTA" gene complement(2220549..2221418) /locus_tag="TCM_042776" /note="dbxref CacaoGD:Thecc1EG042776" mRNA complement(join(2220549..2220769,2221069..2221418)) /locus_tag="TCM_042776" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g52770.2" /inference="similar to AA sequence:Phytozome:Glyma18g52770.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g16511t00001" CDS complement(join(2220707..2220769,2221069..2221197)) /locus_tag="TCM_042776" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18162.1" /db_xref="Phytozome:Glyma18g52770.2" /translation="MNQKFGAAKQPTGTPSLAWSCVVVIVSLLAGASVVHNVYKPNLT LPPVENVDEAKKKQPENKE" gene 2222482..2223166 /locus_tag="TCM_042777" /note="dbxref CacaoGD:Thecc1EG042777" mRNA 2222482..2223166 /locus_tag="TCM_042777" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 2222542..2222802 /locus_tag="TCM_042777" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18163.1" /translation="MPTQLQEELLENCQRDDFQLDVAEPENENLVLENQASNQEVAFR SEQSLKAKKQGPSLVVFLKLAVSAFLGDPSLFISAMFQFNQK" gene 2224618..2225697 /locus_tag="TCM_042778" /note="dbxref CacaoGD:Thecc1EG042778" mRNA 2224618..2225697 /locus_tag="TCM_042778" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039657t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21220.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage" CDS 2224712..2225464 /locus_tag="TCM_042778" /note="paralog of Thecc1EG039657t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY18164.1" /db_xref="Phytozome:POPTR_0010s21220.1" /db_xref="TAIR:AT2G16050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SXZ1" /translation="MPVLLKLKVDGHPHQLELKNSKVPFYCDGCMELGFGFCYQCPNK DCDYILHETCGIRRPQTFHKFFETCDFKFHKENPLGGTRVCDACALEIQGLLYQCSHG DKDLHPCCANLPPVFSLPGLDMEIYLRKEIKSKCLKCQSRKRSSGKVQGWSYVSSDGA YCYHVACLRGALLENWKLGYFQLDVAAAADENTKTLALQKLAPKEVALQGRGQTSKAT KGIKWLIIFLKLVISAIFGDPLSLIANLFISL" gene 2226163..2231166 /locus_tag="TCM_042779" /note="dbxref CacaoGD:Thecc1EG042779" mRNA join(2226163..2226364,2227702..2227838,2230204..2231166) /locus_tag="TCM_042779" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS join(2226256..2226364,2227702..2227838,2230204..2230377) /locus_tag="TCM_042779" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18165.1" /translation="MKRRGAYHSHEKANVNNHLIIGHQNDRKGYAKGHFLAGSGTQRP DMAVGSTRSGASRLDPTVGSGNPRQDPTMGKHRSGAVVLLPSDSSIGILPKSVKNFSM RLIGDIQYLKMQFRSRDHKMRHFLDQYPIILRPFLHQ" mobile_element 2227704..2228076 /note="source:scaffold_2_CACTA_0244 14027 14395" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2227912..2228119 /note="source:INTACT135F_F90_scaffold_2-int 13385 14001" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2228120..2228492 /note="source:scaffold_2_CACTA_0244 14312 14702" /mobile_element_type="transposon:TIR/CACTA" gene 2232133..2233603 /locus_tag="TCM_042780" /note="dbxref CacaoGD:Thecc1EG042780" mRNA join(2232133..2232227,2232772..2233526) /locus_tag="TCM_042780" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13638t00001" mRNA join(2232156..2232227,2232747..2233603) /locus_tag="TCM_042780" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05530.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1414t2; alternateUTRof:Thecc1EG042780t1; inference alignment:Newbler:10:TSA:cgbaP2_g13638t00001" CDS 2232801..2233391 /locus_tag="TCM_042780" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18166.1" /db_xref="Phytozome:POPTR_0008s05530.1" /translation="MIRIKAINHSSHQQHDLHLVQSDSFYICNGCGASGLGPRFSCPH RGCCFNLHEECCSIFTPITSHPFLINCNFIFSKSMPSQRPTCNACRKIVYGPNYYRCN HSNRNLHLSCARLPRTITASNGMNMTLKNEYQPRCLYPMCPKTNSGWSYFSANEHYSY HAGCWKDQMLKNANPRAQRNGLLPLRNNVTRPHRRH" CDS 2232801..2233391 /locus_tag="TCM_042780" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18167.1" /db_xref="Phytozome:POPTR_0008s05530.1" /translation="MIRIKAINHSSHQQHDLHLVQSDSFYICNGCGASGLGPRFSCPH RGCCFNLHEECCSIFTPITSHPFLINCNFIFSKSMPSQRPTCNACRKIVYGPNYYRCN HSNRNLHLSCARLPRTITASNGMNMTLKNEYQPRCLYPMCPKTNSGWSYFSANEHYSY HAGCWKDQMLKNANPRAQRNGLLPLRNNVTRPHRRH" gene complement(2233580..2235058) /locus_tag="TCM_042781" /note="dbxref CacaoGD:Thecc1EG042781" mRNA complement(join(2233580..2233873,2234212..2234347, 2234729..2235058)) /locus_tag="TCM_042781" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30003.m000321" /inference="similar to AA sequence:ricco:30003.m000321" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc2938t1" CDS complement(join(2233661..2233873,2234212..2234347, 2234729..2234901)) /locus_tag="TCM_042781" /note="dbxref ricco:30003.m000321" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18168.1" /db_xref="TAIR:AT2G39518.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLT7" /translation="MAPPPPSTTPQVITLVLKVFMFALLLASLIVLVTDTTTVPLDVI FELKVHFDDVYAYRYVLASIIIGLVYSLLQTAFSLYHLATGNRLISGDGGFVFDFYGD KVLSYVMATGCAAGFGATKDLKALADARKLDFDDYFNKAYASASLLLLAFLCAAVLSV FSSYALPKMVNES" gene 2235178..2236338 /locus_tag="TCM_042782" /note="dbxref CacaoGD:Thecc1EG042782" mRNA join(2235178..2235373,2235493..2236338) /locus_tag="TCM_042782" /product="Excinuclease ABC" /inference="alignment:exonerate- protein:2:ricco:29957.m001406.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042266t1" /inference="similar to AA sequence:Phytozome:Glyma18g06170.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc3963t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4046t1" CDS join(2235371..2235373,2235493..2236167) /locus_tag="TCM_042782" /note="paralog of Thecc1EG042266t1" /codon_start=1 /product="Excinuclease ABC" /protein_id="EOY18169.1" /db_xref="Phytozome:Glyma18g06170.1" /db_xref="TAIR:AT2G30350.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RVE6" /translation="MSGDDDKGKQGEGFFACYLLTSLSPRHKGHTYIGFTVNPRRRIR QHNGEIGSGAWRTKGKHPWEMVICIYGLPTDVSALQFEWAWQHPQESVAVREAAATFK SLSEVANKIKLAYTMLTLPAGQNLNITVDYFSTKYRKDSACCPSLPEQMKVQACSLDE LPCYTEQDEFEYKDDCDNSDEYDEVNDTCETVWGTYPDEVVNASADTCLSSIHEASHE EFEDIEE" mobile_element 2238105..2238169 /note="source:INTACT203_F15_scaffold_6-int 9163 9236" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2241028..2243275) /locus_tag="TCM_042784" /note="dbxref CacaoGD:Thecc1EG042784" mRNA complement(join(2241028..2241488,2241597..2242564, 2242807..2243035)) /locus_tag="TCM_042784" /product="F-box family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021955t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016538001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc698t2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc694t1" mRNA complement(join(2241331..2242564,2242807..2243275)) /locus_tag="TCM_042784" /product="F-box family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021955t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016538001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc694t1" CDS complement(join(2241461..2241488,2241597..2242564, 2242807..2242857)) /locus_tag="TCM_042784" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021955t1" /codon_start=1 /product="F-box family protein, putative isoform 2" /protein_id="EOY18171.1" /db_xref="Phytozome:GSVIVT01016538001" /db_xref="TAIR:AT3G55370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NBE6" /translation="MVFSSVPVYLDPPNWQQPPTQQPGVTSDNHHNPQLPPPPPPPQV GGGGAGAIRPGSMAERARLAKIPQPEVALECPRCESTNTKFCYFNNYSLSQPRHFCKT CRRYWTRGGALRNVPVGGGCRRNKRSKGSNRSKSPAVSERQTGSSSSSSTLASTSCTD MLGHMTPAPPQLPLLPPLHHLGDYNSGVIGINFGGIQAQVAAAIGGTGGTSASNMDFH IGTSSSGGGSMLTNGLVEQWRSLQQVQQFPFLSSLEPPAGLYPFESEGVEAPSYGGQL RSKPLESAITQLAAIKMEETHHQGLNLSRNFLGISGSDQYWGGGGGNAWTDLSGFTSS STSHLLFHQREINS" CDS complement(join(2241593..2242564,2242807..2242857)) /locus_tag="TCM_042784" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021955t1" /codon_start=1 /product="F-box family protein, putative isoform 1" /protein_id="EOY18170.1" /db_xref="Phytozome:GSVIVT01016538001" /db_xref="TAIR:AT3G55370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NBE6" /translation="MVFSSVPVYLDPPNWQQPPTQQPGVTSDNHHNPQLPPPPPPPQV GGGGAGAIRPGSMAERARLAKIPQPEVALECPRCESTNTKFCYFNNYSLSQPRHFCKT CRRYWTRGGALRNVPVGGGCRRNKRSKGSNRSKSPAVSERQTGSSSSSSTLASTSCTD MLGHMTPAPPQLPLLPPLHHLGDYNSGVIGINFGGIQAQVAAAIGGTGGTSASNMDFH IGTSSSGGGSMLTNGLVEQWRSLQQVQQFPFLSSLEPPAGLYPFESEGVEAPSYGGQL RSKPLESAITQLAAIKMEETHHQGLNLSRNFLGISGSDQYWGGGGGNAWTDLSGFTSS STSHLL" mobile_element complement(2244690..2244987) /note="source:scaffold_5_CACTA_0586 1429 1722" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2246393..2246415 /note="source:scaffold_6_CACTA_0712 1368 1440" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2246416..2246463 /note="source:CACAO_M_E14490_F322_scaffold_3 417 464" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2255584..2258612 /locus_tag="TCM_042785" /note="dbxref CacaoGD:Thecc1EG042785" mRNA join(2255584..2256357,2256580..2258612) /locus_tag="TCM_042785" /product="Heat shock cognate protein 70-1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042793t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05410.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg5616t1" CDS join(2256144..2256357,2256580..2258324) /locus_tag="TCM_042785" /note="paralog of Thecc1EG042793t1" /codon_start=1 /product="Heat shock cognate protein 70-1" /protein_id="EOY18172.1" /db_xref="Phytozome:POPTR_0008s05410.1" /db_xref="TAIR:AT5G02500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P08107" /translation="MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSY VAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFTDSSVQSDIKLWPFKVIAGPG DKPMIVVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQ ATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTI EEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERA KRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDK STVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNE KVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYE GERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKIT ITNDKGRLSKEEIENMVQEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGS KLDPTDKKKIEDAIDGAIQWLDNNQLAEADEFEDKMKELESICNPIIAKMYQGAGADM GADMGAGMDDDAPPAGGSGAGPKIEEVD" gene complement(2258615..2262949) /locus_tag="TCM_042786" /note="dbxref CacaoGD:Thecc1EG042786" mRNA complement(join(2258615..2259060,2259472..2259572, 2259706..2259788,2260329..2260513,2261201..2261254, 2261455..2261541,2262099..2262189,2262592..2262653, 2262722..2262949)) /locus_tag="TCM_042786" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene26633" /inference="similar to AA sequence:Phytozome:GSVIVT01016535001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09527t00001" CDS complement(join(2258845..2259060,2259472..2259572, 2259706..2259788,2260329..2260513,2261201..2261254, 2261455..2261541,2262099..2262189,2262592..2262653, 2262722..2262772)) /locus_tag="TCM_042786" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18173.1" /db_xref="Phytozome:GSVIVT01016535001" /db_xref="TAIR:AT3G04020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EA21" /translation="MKGSNKATVLSLAQKCKNILASNWQGHLNTIKSDAKGSKQDIYT SKVKYILKRGKPYIWVPENELHNVNTIIDERGSFSVASPFPGPLARLLKSMNKFPARV ALTGDVVPLKDKKAQSAAETLKEVMLSEEKAVKEFSYTVSGVLSSSNQLSTSRSENLK ELLDGGEKYVIYKFNLSSCMFVDGNGGTHEVDFEDIEKCKADLLAPYSAKLIDGINQS EARRRALILFCFIYLNVNARDAYMLSLDRRGFDVLGKVRSKAMKDEVGEYQWKQFRIT FKEEARDVESFCHQLVQMEEEAVKKVSSYSGLG" mobile_element 2262801..2262855 /note="source:CACAO_M_E12665_F312_scaffold_3 1954 2012" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2263472..2267363 /locus_tag="TCM_042787" /note="dbxref CacaoGD:Thecc1EG042787" mRNA join(2263472..2263788,2264292..2264367,2264481..2264539, 2264620..2264759,2265019..2265074,2265164..2265240, 2265336..2265381,2265740..2265864,2266134..2266201, 2266278..2266365,2266890..2267363) /locus_tag="TCM_042787" /product="Prenyltransferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016534001" /inference="similar to AA sequence:ricco:29887.m000232" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06186t00001" CDS join(2263534..2263788,2264292..2264367,2264481..2264539, 2264620..2264759,2265019..2265074,2265164..2265240, 2265336..2265381,2265740..2265864,2266134..2266201, 2266278..2266365,2266890..2267042) /locus_tag="TCM_042787" /note="dbxref ricco:29887.m000232" /codon_start=1 /product="Prenyltransferase family protein" /protein_id="EOY18174.1" /db_xref="TAIR:AT2G39550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FPP6" /translation="MATRGWDPADSEVEEEDEDETSSPSPSALPSPSSPLPYFDRDRH VAFLEMMYNLIPHYYQSQEINRLTLAFFTISGLHLLQALDRVDKDRVANWVLSFQAHP QSKAELKNGQFYGFHGSRTSQFPPDENGLSPYNAGHLASTYCALAILKTVGYNLLTID KESILISMRNLQQPDGSFMPLHVGAETDLRFVYCAAAVCFMLEDWSGMDREKAKEYIL NCQSYDGGFGLSPGSESHGGGTYCAVASLRLMGYIEDDLLSKNASSSIINVPLLLDWS MQRQATDGGFQGRANKASDTCYAFWIGAVLRILGGYKFIDKIALRSFLLTCQSEFGGF SKYPEMQPDIYHSYYGCTAFSLLEEPGLNPLCAELGMTDLAALGII" gene complement(2268459..2278398) /locus_tag="TCM_042788" /note="dbxref CacaoGD:Thecc1EG042788" mRNA complement(join(2268459..2269911,2272089..2272197, 2273537..2273961,2278264..2278398)) /locus_tag="TCM_042788" /product="Pentatricopeptide repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:29887.m000230" /inference="similar to AA sequence:ricco:29887.m000230" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc586t5" CDS complement(join(2268938..2269911,2272089..2272197, 2273537..2273920)) /locus_tag="TCM_042788" /note="dbxref ricco:29887.m000230" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative" /protein_id="EOY18175.1" /db_xref="TAIR:AT2G39560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJP8" /translation="MEAWNDANYDEMKLGTLRYSSQNELSSETPAAAHHCSYNKSLVQ CLYVFKLSTLCELPPSSSKLLYQLLLPCIYQARDMLLVRILQGFVDVRGGPRVKFNDP NEKRGKVDLLMEIEDGDIIDFAACVLFIGGMIGKWKFDATPLTNLCPQWGNLDTQSQP RAHLERGGLKMKSLSSVGLGLSIVFGCLVLALVAELYYLLWWKKRLTSRDIENDYSNP AREFFYMFCWKRSSSMSHTALNPQEIRMTEEQQQSHHHQLHLHSNKDLLLKPNFGHHD DPHGMENELLRLHSLSGPPRFLFTIIEETKEDLESEEAKSKCDNKSRVGSRGRSMSDL LLTVETPYLTPLASPPFFTPPLTPMEACYSHQGFNPLFESTTDAEFNRIRSSPPPKFK FLQEAEEKLHRKKLMEEVHNSDEFGPFGQENGDMTPPSKYLKDEEDGSFITIIVDRSK ERGFNHNYQQQLHSSTSQVLPLSSSPSTFKSPARNTPI" gene complement(2279004..2287318) /locus_tag="TCM_042790" /note="dbxref CacaoGD:Thecc1EG042790" mRNA complement(join(2279004..2279308,2281353..2281398, 2283936..2284538,2287220..2287318)) /locus_tag="TCM_042790" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21320.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21320.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS complement(join(2279191..2279308,2281353..2281398, 2283936..2284428)) /locus_tag="TCM_042790" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY18176.1" /db_xref="Phytozome:POPTR_0010s21320.1" /db_xref="TAIR:AT5G17600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMG4" /translation="MGESDFGLENTKLSVILVGIGSAALVVTIYHCIAMGWCRRHTQI PRPQQAQRQLPQHSFRHETSAVPSSEISAAQLIPAHKYQKGMGLVDDDGMCAVCLSQF EEGEELRTLPECLHSYHAPCIDMWLYSHSSCPMCRTDATPFPSPQIFHHRPDSDSGSV RMDSGLVGLQSELSRFERSRTCVHMVEDERWACNGLPSDIVVGHGSQAFFMSICGIYS " gene 2280267..2282934 /locus_tag="TCM_042791" /note="dbxref CacaoGD:Thecc1EG042791" mRNA join(2280267..2280303,2282195..2282289,2282808..2282934) /locus_tag="TCM_042791" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01775t00002" CDS join(2280277..2280303,2282195..2282289,2282808..2282862) /locus_tag="TCM_042791" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18177.1" /translation="MVQIFFLIFPCNFSPPSFCSLTSLFHLFLCLDMLIILHFSRALT MAVFGKPVFWQFLD" gene 2287753..2290392 /locus_tag="TCM_042792" /note="dbxref CacaoGD:Thecc1EG042792" mRNA join(2287753..2287848,2288341..2290392) /locus_tag="TCM_042792" /product="FYD" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g006020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021960t1" /inference="similar to AA sequence:ricco:29585.m000573" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc430t1" CDS 2288637..2290160 /locus_tag="TCM_042792" /note="dbxref ricco:29585.m000573; paralog of Thecc1EG021960t1" /codon_start=1 /product="FYD" /protein_id="EOY18178.1" /db_xref="TAIR:AT3G12570.4" /db_xref="UniProtKB/TrEMBL:UniRef50_D8TBY2" /translation="MGEALLTTLSMENYHPSTLLSMDSGSFPPDELEREMNRPMLLSQ PPDINLPLSSEPSPPPLAWNDSCDILDVSLAPQIYESEAAVNIPKVAKKCIKRLDSVW GAWFFFTFYFKPVLNGKSKSKVSRDGNGVSGYDKSDLQLDSFLVQHDMENMYMWVFKE RPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFVRSHRMQRKHYRGLSNPQCLHGIE VVPSPNLSNIDDEEKRRWTELTGRDINFSIPPEASDFGAWRNLTNTEFELERSPAPLK SHLNSHPRKLLNGTGLNLSTQPLEHINGDGMDVSPLCNKRKKDYFRHGNDEDPGLPNN LHSNRVLDMKIHPVEPTWLNEFSGVMKNVYGPVTAAKTIYEDDEGFLIIVSLPFSDLQ RVKVTWRNTPSHGIVKICYVSTACMPFIKRHDRTFKLTDPTPEHCPPGEFIREIPLPN RIPEDAKLEAYRDETGTMLEIIVPKHRVGPEEHEVRVCLRPSPWSERAFMDLEESIV" gene complement(2291025..2294908) /locus_tag="TCM_042793" /note="dbxref CacaoGD:Thecc1EG042793" mRNA complement(join(2291025..2293036,2293248..2293947, 2294696..2294908)) /locus_tag="TCM_042793" /product="Heat shock protein 70" /inference="alignment:exonerate- protein:2:ricco:30025.m000589" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042785t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21270.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00497t00002" CDS complement(join(2291301..2293036,2293248..2293461)) /locus_tag="TCM_042793" /note="paralog of Thecc1EG042785t1" /codon_start=1 /product="Heat shock protein 70" /protein_id="EOY18179.1" /db_xref="Phytozome:POPTR_0010s21270.1" /db_xref="TAIR:AT3G12580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P08107" /translation="MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSY VAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFTDATVQSDIKLWPFKVIAGPA DKPMIVVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQ ATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTI EDGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERA KRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDK SSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNE KVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYE GERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKIT ITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKAEAKNSLENYAYNMRNTVKDEKIGS KLSPDDKKKIEDAIDGAVQWLDGNQLAEADEFEDKMKELESICNPIIAKMYQGAGPDM GGAGMADDIPPAGGSGAGPKIEEVD" mobile_element 2294418..2294526 /note="source:CACAO_on_SS_E42_scaffold_2 3128 3235" /mobile_element_type="transposon:TIR/Mutator" gene complement(2295871..2296618) /locus_tag="TCM_042794" /note="dbxref CacaoGD:Thecc1EG042794" mRNA complement(join(2295871..2296036,2296140..2296213, 2296340..2296618)) /locus_tag="TCM_042794" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9403t1" CDS complement(join(2295944..2296036,2296140..2296213, 2296340..2296445)) /locus_tag="TCM_042794" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18180.1" /translation="MKRTQVVAYLIIAFLLVTASQSQFSMAIRIQAMGTVDEDVKIRT AKPKPNSGKRFLLSTWKEPATQFKDNMRKVPSAPNPIGNRHPPSKP" mobile_element complement(2298777..2298884) /note="source:CACAO_PIF_E119_scaffold_3 4505 4611" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 2299225..2303287 /locus_tag="TCM_042795" /note="dbxref CacaoGD:Thecc1EG042795" mRNA join(2299225..2299371,2299484..2299586,2300430..2300527, 2300648..2300748,2300958..2301051,2302478..2302555, 2302771..2303149) /locus_tag="TCM_042795" /product="Ubiquitin carrier protein 7 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g039320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041873t2" /inference="similar to AA sequence:Phytozome:POPTR_0010s21380.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1558t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1558t2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc746t4_C2" mRNA join(2299226..2299371,2299484..2299586,2300430..2300527, 2300648..2300748,2302478..2302555,2302771..2303287) /locus_tag="TCM_042795" /product="Ubiquitin carrier protein 7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g039320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041873t2" /inference="similar to AA sequence:Phytozome:POPTR_0010s21380.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1558t2" CDS join(2299329..2299371,2299484..2299586,2300430..2300527, 2300648..2300748,2302478..2302555,2302771..2302848) /locus_tag="TCM_042795" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041873t2" /codon_start=1 /product="Ubiquitin carrier protein 7 isoform 1" /protein_id="EOY18181.1" /db_xref="Phytozome:POPTR_0010s21380.1" /db_xref="TAIR:AT5G59300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42540" /translation="MASQATLLLQKQLKDLCKNPVDGFSAGLVDENNVFEWNVTIMGP PDTLYEGGCFNAIMKFPEDYPVNPPTVRFISEMWHPNVFRSGNVCISILHSPGDDPDG YELASERWNPLHTVESIVLSIISMLSSPNDESPANVDAAIDWRENVEEFKQKVKRCVK KSQDLL" CDS join(2299329..2299371,2299484..2299586,2300430..2300527, 2300648..2300748,2300958..2301029) /locus_tag="TCM_042795" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041873t2" /codon_start=1 /product="Ubiquitin carrier protein 7 isoform 2" /protein_id="EOY18182.1" /db_xref="Phytozome:POPTR_0010s21380.1" /db_xref="TAIR:AT5G59300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42540" /translation="MASQATLLLQKQLKDLCKNPVDGFSAGLVDENNVFEWNVTIMGP PDTLYEGGCFNAIMKFPEDYPVNPPTVRFISEMWHPNVFRSGNVCISILHSPGDDPDG YELASERWNPLHTAASGGIRILPLSLLDHAWSRDGG" mobile_element 2305797..2306674 /note="source:CACAO_M_E52630_F119_scaffold_7 63 925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2307322..2307862 /note="source:INTACT135F_F90_scaffold_2-int 13387 14009" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2308404..2308811) /note="source:scaffold_8_CACTA_0855 1779 2225" /mobile_element_type="transposon:TIR/CACTA" gene complement(2309522..2311318) /locus_tag="TCM_042798" /note="dbxref CacaoGD:Thecc1EG042798" mRNA complement(join(2309522..2310202,2311299..2311318)) /locus_tag="TCM_042798" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1552t1" CDS complement(2309554..2309742) /locus_tag="TCM_042798" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18183.1" /translation="MLQANGDAHFFYVGHLAFLIVLVATKGLFSGLFCKCTGDLPKQG HYVMGVFEYLGERRIMAP" mobile_element 2310095..2310183 /note="source:INTACT850F_F2_scaffold_5-int 1 90" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2310180..2311277 /note="source:scaffold_4_CACTA_0498 1 1127" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2311278..2311563 /note="source:INTACT850F_F2_scaffold_5-int 316 604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2311664..2311738 /note="source:scaffold_9_CACTA_0937 10895 10969" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2312000..2312976 /note="source:CACAO_PIF_E144_scaffold_10 1200 2391" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2314039..2314121) /note="source:scaffold_10_CACTA_0137 6928 7010" /mobile_element_type="transposon:TIR/CACTA" gene 2315758..2316918 /locus_tag="TCM_042799" /note="dbxref CacaoGD:Thecc1EG042799" mRNA 2315758..2316918 /locus_tag="TCM_042799" /product="Agamous-like MADS-box protein A" /inference="alignment:exonerate- protein:2:frave:gene18029.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042848t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031333001" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1542t1" CDS 2315799..2316500 /locus_tag="TCM_042799" /note="paralog of Thecc1EG042848t1" /codon_start=1 /product="Agamous-like MADS-box protein A" /protein_id="EOY18184.1" /db_xref="Phytozome:GSVIVT01031333001" /db_xref="TAIR:AT5G48670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UAA8" /translation="MTPRKEKFSYITDDSARKATFRIRKEGLLKKASELSTLCGIEAC VIIYSPYDSQPVVWPSPEGAQSVLSEFKKMPTMDQSTRMMNQESFLRQRIANANQQLQ RQSKDNREKEITQVMFQCLAGQGLESLNMMDLNDLGWLLEQNLEGIDKGIDTLTKASH SQGSVATASATMATPEAMLKSGEKVQAESPEREGSTETEDWQQMIEELMHPSEDVGQG LVLPFGDNNPTAFFP" gene complement(2318374..2320773) /locus_tag="TCM_042800" /note="dbxref CacaoGD:Thecc1EG042800" mRNA complement(join(2318374..2318923,2319127..2319254, 2319389..2320392,2320570..2320773)) /locus_tag="TCM_042800" /product="F-box family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042802t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05060.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS complement(join(2318609..2318923,2319127..2319254, 2319389..2320392,2320570..2320658)) /locus_tag="TCM_042800" /note="paralog of Thecc1EG042802t1" /codon_start=1 /product="F-box family protein" /protein_id="EOY18185.1" /db_xref="Phytozome:POPTR_0008s05060.1" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM50" /translation="MGKKSMMKKKSPETEHDPDDNQRKTAKEQLNMDPKDFISCFPDE ILCHIITFLPFESAVQTTFLSTRWKDLWKKARVLHGTIEDAVVTILSLLNDLADLHPP RNKWGFQFNFGHGRALFAAIAPNNTLHLDFSAGEHKLSKSFDWLLPLNLPKRDKWPFP YKYEKILELNTPLPTDQQFKIKALYLISVCRLSRKALTSMVSYLPFLESLTIAKCNGV QSLDIENAARLQKLTVMDCPQLEYLCFGGSCLKSFQYRGRLVCFRFNVFCNCNSYRSW LSCVHHRGLYLEDAMLDFRQGPLTHWTWDFKKPSSYTHYYGLYKGSCNCGCTTLFQCF KSILESIDGVESLTLCRWLFEACFSNLSKLNFEFCFNELKELWWIDCSMERRNINALL CFLKLCPNLEKLYVTIDPKCYDLPSTEKFSAIFAGSDKLNNLKFVKLKGCADETKEMF LARRLIPLFLRTPLIISKQDGRCLRYLLKVPKLEKKGKYPYKFKMVEKPPEIYPDHVH MNL" gene complement(2321308..2324123) /locus_tag="TCM_042801" /note="dbxref CacaoGD:Thecc1EG042801" mRNA complement(join(2321308..2321976,2322094..2322258, 2322356..2323253,2324024..2324123)) /locus_tag="TCM_042801" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016609001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042846t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05060.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.17 coverage" CDS complement(join(2321752..2321976,2322094..2322258, 2322356..2323253,2324024..2324109)) /locus_tag="TCM_042801" /note="paralog of Thecc1EG042846t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY18186.1" /db_xref="Phytozome:POPTR_0008s05060.1" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM50" /translation="MGKKRRIKKSNQLKQGHDPDGNIPRNTASNLDPNDFISRLPDNI LYHIISSLPFQSAVRTTFLSTQWKDLWKEALLTSVRDVIMEDAVTAISSFVDDFEQDR PRNEGGVKFELGHGRVFLAAIPPNNSLQLDFSAGKQEFPRPFDWLLKLNLAPRCHWPS RWYGLGWMLEEPSCNTKKLKSLYLISVSYPSKEAVSSMVSSFPFLESLTIAKCNGLRS LQIKDARELLKLVVLDCPQLESVRFEGSNLTSFQYRGRLVLFESELSSNDDRPIFPNW SLSPFKFQLNDAMLDFRQGPPIYNGINGDCFRLILESIKNVNSLTLCRWVFEALISLV LSSLSRDSEFRLYGLTELWWIDYSMDRDNFNSLLIFLKLCPCLERLYLTIDPESYNMG STKQRSSKVNGLRKLNHLKLLKLEGFANGNKEILFAKRLRPFFRMKPVILAKSKGTYR DLFAPSG" gene complement(2325618..2327533) /locus_tag="TCM_042802" /note="dbxref CacaoGD:Thecc1EG042802" mRNA complement(join(2325618..2325916,2326113..2326240, 2326380..2327353,2327478..2327533)) /locus_tag="TCM_042802" /product="F-box family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042803t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05060.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1540t1" CDS complement(join(2325647..2325916,2326113..2326240, 2326380..2327349)) /locus_tag="TCM_042802" /note="paralog of Thecc1EG042803t1" /codon_start=1 /product="F-box family protein" /protein_id="EOY18187.1" /db_xref="Phytozome:POPTR_0008s05060.1" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM50" /translation="MDSKDLISCFPDEILYHIITFLPLESAVQTTLLSTRWKDLWKKA FVHGSIEDAVATVFSLLNDFAELRPPRSKRGFQFNIGQGRALFAAIAPNDALHLDFSA GEQGLSRSFDWLLPLNLPACDKWPFPYTHDKLLELNLPLQQFKIKALYLTSVCRLSSK VLTSLVSYLPFLESLTIAKCNGVQSLDIENAARLQKLTVLDCPQLEYFCFGGSSCLKS FQYRGRLVSFRFKPSCKFNSYHSSNEHFCHCGFHLEDAMLDFTQGPLTRWTWDFDMPS SADPPYGFYKICNCGSATLFQCVKLILNSIVAVESLTMCRWLFEACFNLGFRLPQLKE LWWIDCSMERDNINALLCFLNLCSELERLYVTIDPKCYNLPSTDRFSAMINVPDYKLN NLKFVKVEGCADVVRQLTPLFLRSRLRYVVKVPNLEKKLKYPYSFKLVEQLPEIYSDH VHMNL" mobile_element 2328398..2328723 /note="source:INTACT164_F159_scaffold_7-int 11019 11345" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2329346..2331861) /locus_tag="TCM_042803" /note="dbxref CacaoGD:Thecc1EG042803" mRNA complement(join(2329346..2329949,2330150..2330314, 2330505..2331417,2331755..2331861)) /locus_tag="TCM_042803" /product="F-box family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042802t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05060.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(2329632..2329949,2330150..2330314, 2330505..2331413)) /locus_tag="TCM_042803" /note="paralog of Thecc1EG042802t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY18188.1" /db_xref="Phytozome:POPTR_0008s05060.1" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM50" /translation="MDSKDLISCFPDEILYLIITFLPLESAVQTTVLSTRWKDLWKKA FVYGSIEDAVTNVFSLLNDFAELRPLRSKWGFQFNIGQGRALFAAIAPDDALHLDFST GEQGLSRSFDWLLPLNLPVRDKWPFPYKHDKLLELNLPLQQFKIKALYLTSVCRLFSK VLTSLVSYLPFLESLTIAKCNGVQSLDIENAARLQKLTVLDCPQLEYFCFGGSSSLKS FQYRGRLVSFRFKPSCKYNFHQSLSHFCDCGVQLEDAMLDFRQGPLTRWTWDFEMPTS VGPNGFYKICNCGSTTLFQCCKLILDSKSFCQKLPSSRTNLGFYLLLLKELRWIDCSA ERENINALLCFLKFCHNLERLYVTIDPKCYNLPSTKRFSAMINVPDYKLKDLKFVKVE GCADETTETLFARRLIPLFPRTPLIISKPYGSRLRCLVKVPKLEKKGKYPYKFKVVEK LPEIYSDHVHMNV" mobile_element 2335560..2335650 /note="source:INTACT607_F3_scaffold_4-int 12187 12244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2335644..2336083) /note="source:CACAO_M_S_E89925_F3_scaffold_8 741 1181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2336557..2336683) /note="source:scaffold_2_CACTA_0244 14700 14827" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2336733..2337534) /note="source:scaffold_2_CACTA_0244 12400 13171" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2336769..2337635 /note="source:INTACT135F_F90_scaffold_2-int 13229 14014" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2337628..2341788 /note="source:CACAO_M_E3326_F17_scaffold_1 891 5028" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2338574..2348591 /locus_tag="TCM_042804" /note="dbxref CacaoGD:Thecc1EG042804" mRNA join(2338574..2338773,2344656..2344713,2344804..2344906, 2345275..2345342,2345977..2346070,2347002..2347118, 2347410..2347589,2348566..2348591) /locus_tag="TCM_042804" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc773t12_C2" CDS join(2338618..2338773,2344656..2344713,2344804..2344906, 2345275..2345342,2345977..2346070,2347002) /locus_tag="TCM_042804" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18189.1" /translation="MIQTAVQFEGLPNDDPNAHIVNFLEIYDTFKANGVTDDAIRLRL FPFSLRDKVSFFNGFLQATLLLQKQLQDLWKKPVDGFSAELLDDNVLEWIVIITGPQI LSRIFPSDYPANPPTVRFISKMWHPNGCKWWNMDFVTCTPGSCMVQGWRMNADGIGT" mobile_element complement(2342514..2342953) /note="source:scaffold_5_CACTA_0607 5912 6354" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2343034..2343084) /note="source:scaffold_5_CACTA_0607 6373 6423" /mobile_element_type="transposon:TIR/CACTA" gene 2348630..2350151 /locus_tag="TCM_042805" /note="dbxref CacaoGD:Thecc1EG042805" mRNA join(2348630..2349200,2349401..2349536,2349655..2350151) /locus_tag="TCM_042805" /product="CASP-like protein" /inference="alignment:exonerate- protein:2:ricco:29585.m000576" /inference="similar to AA sequence:Phytozome:GSVIVT01016570001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7797t5" gene complement(2348735..2349447) /locus_tag="TCM_042806" /note="dbxref CacaoGD:Thecc1EG042806" mRNA complement(join(2348735..2349213,2349396..2349447)) /locus_tag="TCM_042806" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03231t00002" CDS complement(2348801..2348953) /locus_tag="TCM_042806" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18191.1" /translation="MMTMMMVVVLVEVEMAVNFVMEGRKGGEREIHERNREKFGRRRR RRRREG" CDS join(2348971..2349200,2349401..2349536,2349655..2349876) /locus_tag="TCM_042805" /codon_start=1 /product="CASP-like protein" /protein_id="EOY18190.1" /db_xref="Phytozome:GSVIVT01016570001" /db_xref="TAIR:AT3G55390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2U0" /translation="MLSPQAVHNGETPSPHHRILTPQFHSTVTLRKLRRFNSLILVFR LAAFAFSLASSVFMVTNSRGSDSPHWFDFDAFRFVFAANAIVALYSLFEMGVSVWEIS TGATLFPEILQVWFDFGHDQVFAYLLLSADSAGTALAKTLKGTDTCKASNSFCVQSDI SVALGFAGFVFLGFSSLLSGFRVVCYIINGSRFHL" gene complement(2351193..2352935) /locus_tag="TCM_042807" /note="dbxref CacaoGD:Thecc1EG042807" mRNA complement(join(2351193..2351461,2352462..2352670, 2352850..2352935)) /locus_tag="TCM_042807" /product="Oligosaccaryltransferase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05330.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc436t1" CDS complement(join(2351348..2351461,2352462..2352584)) /locus_tag="TCM_042807" /codon_start=1 /product="Oligosaccaryltransferase" /protein_id="EOY18192.1" /translation="MRSHSGVDIALDSGSKGRGFESHCDRHPFNRFCILSLVKFSMID DQQLGFLANFLGIFIFALVIAYHYVMADPKYDGN" mobile_element complement(2353498..2353647) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3800 3947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2353959..2354420 /note="source:scaffold_2_CACTA_0244 12528 13262" /mobile_element_type="transposon:TIR/CACTA" gene 2356270..2360134 /locus_tag="TCM_042808" /note="dbxref CacaoGD:Thecc1EG042808" mRNA join(2356270..2356416,2356879..2356983,2357510..2357596, 2357776..2357863,2357957..2358048,2358163..2358227, 2358310..2358398,2358674..2358751,2358842..2358935, 2359029..2359095,2359180..2359243,2359333..2359373, 2359589..2360134) /locus_tag="TCM_042808" /product="UDP-XYL synthase 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041878t4" /inference="similar to AA sequence:Phytozome:POPTR_0010s21420.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07886t00001" CDS join(2356903..2356983,2357510..2357596,2357776..2357863, 2357957..2358048,2358163..2358227,2358310..2358398, 2358674..2358751,2358842..2358935,2359029..2359095, 2359180..2359243,2359333..2359373,2359589..2359774) /locus_tag="TCM_042808" /note="paralog of Thecc1EG041878t4" /codon_start=1 /product="UDP-XYL synthase 6" /protein_id="EOY18193.1" /db_xref="Phytozome:POPTR_0010s21420.2" /db_xref="TAIR:AT2G28760.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q75PK7" /translation="MSANGDHNSASKKPPSPSPLRFSKFFQSNMRILVTGGAGFIGSH LVDKLMENEKNEVIVVDNFFTGSKDNLRKWIGHPRFELIRHDVTEALLVEVDQIYHLA CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQTESY WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSN FIAQAIRNEPLTVQLPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLEL AEAVKELINPEVQISMVENTPDDPRQRKPDITKAKELLGWEPTVKLRDGLPLMEEDFR QRLGVSRKN" gene complement(2360138..2366065) /locus_tag="TCM_042811" /note="dbxref CacaoGD:Thecc1EG042811" mRNA complement(join(2360138..2360565,2360649..2360777, 2360972..2361127,2361733..2361848,2361947..2362127, 2362953..2363051,2363449..2363542,2363816..2363940, 2364027..2364194,2364461..2364610,2364745..2364888, 2365450..2366065)) /locus_tag="TCM_042811" /product="Methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS)" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016575001" /inference="similar to AA sequence:Phytozome:POPTR_0010s21430.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9608t21" CDS complement(join(2360395..2360565,2360649..2360777, 2360972..2361127,2361733..2361848,2361947..2362127, 2362953..2363051,2363449..2363542,2363816..2363940, 2364027..2364194,2364461..2364610,2364745..2364888, 2365450..2365755)) /locus_tag="TCM_042811" /codon_start=1 /product="Methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS)" /protein_id="EOY18194.1" /db_xref="Phytozome:POPTR_0010s21430.1" /db_xref="TAIR:AT3G55400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTK5" /translation="MAAAMMNLSSSIQSGLFSSLKPSSFFNFKTTHFKNRFFLPQSHF IFSKRSMLCTCSSNNSNFQTGAKAEPYVVTTPLYYVNAPPHMGSAYTTIAADAIARFQ RLLGKRVIFVTGTDEHGEKIATAAAAQGSSPSEHCDVISQAYKMLWKDLNIAYDKFIR TTEPKHEAIVKEFYSRVLANDDIYRDDYEGLYCVNCEEYKDEKELLENNCCPTHLKPC VHRREDNYFFALSKYQKSLEETLAKNPDFVQPSYRLNEVQSWIKSGLRDFSISRASVD WGIPVPNDNKQTIYVWFDALLGYLSALLEENEQPSLQSAVSSGWPVSLHLIGKDILRF HAVYWPAMLMSAGLTLPKMVFGHGFLTKDGMKMGKSLGNTIEPNELVHKFGPDAVRYF FLREVEFGKDGDYSEERFINIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSTIAAE EQDFKDTVEKLVEQAHIHYKNLSLSSACEAVLEIGNAGNLYMDKHQPWSLFKQGGAAT EAAAKDLVIILEAMRIIAIALSPVTPSLCRRIYAQLGYSDDQFNNLNWSETKWGGLKG GQVMAQPKPVFTRIEQIKETENGGEAAKKVVKKKEKKPQVQGVVEA" gene 2366350..2366843 /locus_tag="TCM_042812" /note="dbxref CacaoGD:Thecc1EG042812" mRNA 2366350..2366843 /locus_tag="TCM_042812" /product="Histone superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400000792" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021970t2" /inference="similar to AA sequence:Phytozome:POPTR_0168s00200.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g17689t00001" CDS 2366407..2366718 /locus_tag="TCM_042812" /note="paralog of Thecc1EG021970t2" /codon_start=1 /product="Histone superfamily protein" /protein_id="EOY18195.1" /db_xref="Phytozome:POPTR_0168s00200.1" /db_xref="TAIR:AT5G59970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62805" /translation="MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG G" gene 2368879..2372497 /locus_tag="TCM_042813" /note="dbxref CacaoGD:Thecc1EG042813" mRNA join(2368879..2369368,2369465..2369710,2369820..2369925, 2370431..2370782,2371155..2371439,2371552..2372497) /locus_tag="TCM_042813" /product="ACT domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041881t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s05300.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11051t00001" CDS join(2369017..2369368,2369465..2369710,2369820..2369925, 2370431..2370782,2371155..2371439,2371552..2371698) /locus_tag="TCM_042813" /note="paralog of Thecc1EG041881t2" /codon_start=1 /product="ACT domain-containing protein" /protein_id="EOY18196.1" /db_xref="Phytozome:POPTR_0008s05300.1" /db_xref="TAIR:AT2G39570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80644" /translation="MDNLKTHPSASMPLPFPQNKGNVKPHRRTTPLLSTSPCSGDSLL EKKIPKYTLLTTNPETPGHIPVMGIPSDDVVLIQLPKGPSEPTVVTVNCPDKPGLGCD LCRIILEFGLSIARADFSTDGRWCYIVFWLVPNVSNSSRIDWESLKNRLVSICPSCLL PFYYFNQQGGDGNGNQNSTLSSSVYLLKLCCLDRKGLLNDVTKILSELEFTIQKVKVM TTPDGRVVDLFYITDGMELLHTKQRRDDTTAHLITVLGKYCISCELQLAGPEYESMKA FSSLPPAVAEELFSYELADKEASSKELKADLMALKKATVTIDNQLSPVHTLLQIQCVD QKGLFYDILRTSKDCDIQIAYGRFSSSLRGYRNMDLFIRQADGKKIVDPKHQTALCSR LKEEMLHPFRLLIVNRGPDTELLVANPVELSGKGRPRVFHDVTLALKMLGICIFSAEI GRHSTSDRQLEVYRFLLDDSCEFSLASSQARNRIVDRVRRILMGW" gene complement(2372934..2383639) /locus_tag="TCM_042814" /note="dbxref CacaoGD:Thecc1EG042814" mRNA complement(join(2372934..2373349,2373853..2374171, 2374267..2374365,2375071..2378140,2378327..2378660, 2378855..2382350,2383257..2383382,2383477..2383639)) /locus_tag="TCM_042814" /product="IKI3 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21550.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21550.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8071t2; alternateUTRof:Thecc1EG042814t1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8071t10_C1" mRNA complement(join(2372934..2373349,2373853..2374171, 2374267..2374365,2375071..2378140,2378327..2378660, 2378855..2382350,2383257..2383384)) /locus_tag="TCM_042814" /product="IKI3 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21550.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21550.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8071t10_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8071t10_C1" mRNA complement(join(2372934..2373349,2373853..2374000, 2375160..2378140,2378327..2378660,2378855..2382678)) /locus_tag="TCM_042814" /product="IKI3 family protein isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21550.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21550.1" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc114t15; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8071t10_C1" mRNA complement(join(2372934..2373148,2373287..2373349, 2373853..2374171,2375071..2378140,2378327..2378660, 2378855..2382470)) /locus_tag="TCM_042814" /product="IKI3 family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21550.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21550.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc152t10; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8071t10_C1" mRNA complement(join(2372934..2373148,2373287..2373349, 2373853..2374171,2375071..2378140,2378331..2378660, 2378855..2379620)) /locus_tag="TCM_042814" /product="IKI3 family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21550.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21550.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc343t2; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8071t10_C1" mRNA complement(join(2372934..2373349,2373853..2374171, 2374267..2374365,2375071..2378140,2378331..2378660, 2378855..2379620)) /locus_tag="TCM_042814" /product="IKI3 family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21550.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21550.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8081t2; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8071t10_C1" mRNA complement(join(2372934..2373268,2373858..2374171, 2374267..2374365,2375071..2378140,2378327..2378660, 2378855..2379620)) /locus_tag="TCM_042814" /product="IKI3 family protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21550.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21550.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc343t1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8071t10_C1" CDS complement(join(2373225..2373268,2373858..2374171, 2374267..2374365,2375071..2378140,2378327..2378660, 2378855..2379013)) /locus_tag="TCM_042814" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="IKI3 family protein isoform 6" /protein_id="EOY18202.1" /db_xref="Phytozome:POPTR_0010s21550.1" /db_xref="TAIR:AT5G13680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ADX6" /translation="MKNLKLYSEITSNLELQSEGEVLLFAAYDIESNRFFFASSDNLI YTLHLSSFQNERAWTKGPLQAEIDPLGLEPEDVITSFDYLMEKEALIVGTSSGLLLLH NVDGKETEVVGQVEGGVKCISPSPDGDLLGVTTGLGQLLVMTHDWDLLYETALEDHPE GVDVRELDFLSRDVLGSPISWRGDGKYFATLSEMPNSSLKKRLKVWERDTGALHASSE PKELMGAILEWMPSGAKIAAVCDRKPEAGPSIVFYERNGLERSSFCINEPVDATVELL KWNCSSDLLAAIVRSGNYDSVKIWFFCNNHWYLKQEIKYLRKDGVRFMWDPTKPQQLI SWTLGGQVTVYKFIWVAAVIGDSTALVIDDSKILVTPLSLSLLPPPMYLFSLNFPSAV REMAFYSTKGKNCLAALLSNGCLCVAELPAPDTWEELEGKEFSVEPCVSATSLGSFVH LIWLDSHMLLAVSHYGFNHSNCSFQTPSSEDRLCGFYLQEIELACYEDNLPGLLTCSG WHAKVSYQNLLEGLVMGIVPNPAKRCAAFVQFDGGEVFEYTSKLGITRRDLKHDEISF SSSCPWMNVVLVGVSEQSQHLLFGLDDMGRLHVGRRILCSNCSSFSFYSNLADNVITH LILATKQDLLFIVDISDILHGKLELTYENFVHIGSKRKEEDNINYINIWEKGAKVVGV LHGDEAAVILQTNRGNLECIYPRKLVLASIVNALNQKRFKDALLIVRRHRIDFNVIVD YCGLQAFLQSASEFVRQVNNLSYITEFVCAIKTEKMTETLYKKFFSLPYCKEQKDLQA NDLKGSDASLDATNKVSSVLLAIRRALGQQVPESPARELCILTTLARSDPPALEEALE RVKVIREMELLDSDDPRRMNCPSSEEALKHLLWLSVSDAVFEAALGLYDLNLAAIVAL NSQRDPKEFLPFLQELDRLPVLLMRYNIDLRLRRFEKALRHIVSAGDAHFADCMNLVK KNPQLFPLGLQLITDPIKRGQVLEAWGDHLSDEKCFDDAAATYLCCSSLPKALKAYRE CGNWSGVLTVAGLIKLEKDEVMQLAHELCEELQALGKPGEAGKIALEYCGDISVGINL LISARDWEEALRVAFLHRREDLVSEVKNASLDCASSLIDDYKEGLEKVGKYLARYLAV RQRRLLLAAKLQAEERSINDIDDDTASEASSTFSGMSVYTTGTRKSSAASTSSTVASK ARDARRQRSRGKIRPGSPGEEMALVEHLKGMSLTAGAKSELKSLLVSLVMLGKEETAR KLQHVGENFQLSHMAAVRLAEDTMSNDSIDERAHTLERYVQKVKAELQDSDAFSWRCR VFLSPWRRYSIEAAFDLHS" CDS complement(join(2373856..2374171,2375071..2378140, 2378327..2378660,2378855..2379013)) /locus_tag="TCM_042814" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="IKI3 family protein isoform 3" /protein_id="EOY18199.1" /db_xref="Phytozome:POPTR_0010s21550.1" /db_xref="TAIR:AT5G13680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ADX6" /translation="MKNLKLYSEITSNLELQSEGEVLLFAAYDIESNRFFFASSDNLI YTLHLSSFQNERAWTKGPLQAEIDPLGLEPEDVITSFDYLMEKEALIVGTSSGLLLLH NVDGKETEVVGQVEGGVKCISPSPDGDLLGVTTGLGQLLVMTHDWDLLYETALEDHPE GVDVRELDFLSRDVLGSPISWRGDGKYFATLSEMPNSSLKKRLKVWERDTGALHASSE PKELMGAILEWMPSGAKIAAVCDRKPEAGPSIVFYERNGLERSSFCINEPVDATVELL KWNCSSDLLAAIVRSGNYDSVKIWFFCNNHWYLKQEIKYLRKDGVRFMWDPTKPQQLI SWTLGGQVTVYKFIWVAAVIGDSTALVIDDSKILVTPLSLSLLPPPMYLFSLNFPSAV REMAFYSTKGKNCLAALLSNGCLCVAELPAPDTWEELEGKEFSVEPCVSATSLGSFVH LIWLDSHMLLAVSHYGFNHSNCSFQTPSSEDRLCGFYLQEIELACYEDNLPGLLTCSG WHAKVSYQNLLEGLVMGIVPNPAKRCAAFVQFDGGEVFEYTSKLGITRRDLKHDEISF SSSCPWMNVVLVGVSEQSQHLLFGLDDMGRLHVGRRILCSNCSSFSFYSNLADNVITH LILATKQDLLFIVDISDILHGKLELTYENFVHIGSKRKEEDNINYINIWEKGAKVVGV LHGDEAAVILQTNRGNLECIYPRKLVLASIVNALNQKRFKDALLIVRRHRIDFNVIVD YCGLQAFLQSASEFVRQVNNLSYITEFVCAIKTEKMTETLYKKFFSLPYCKEQKDLQA NDLKGSDASLDATNKVSSVLLAIRRALGQQVPESPARELCILTTLARSDPPALEEALE RVKVIREMELLDSDDPRRMNCPSSEEALKHLLWLSVSDAVFEAALGLYDLNLAAIVAL NSQRDPKEFLPFLQELDRLPVLLMRYNIDLRLRRFEKALRHIVSAGDAHFADCMNLVK KNPQLFPLGLQLITDPIKRGQVLEAWGDHLSDEKCFDDAAATYLCCSSLPKALKAYRE CGNWSGVLTVAGLIKLEKDEVMQLAHELCEELQALGKPGEAGKIALEYCGDISVGINL LISARDWEEALRVAFLHRREDLVSEVKNASLDCASSLIDDYKEGLEKVGKYLARYLAV RQRRLLLAAKLQAEERSINDIDDDTASEASSTFSGMSVYTTGPGEEMALVEHLKGMSL TAGAKSELKSLLVSLVMLGKEETARKLQHVGENFQLSHMAAVRLAEDTMSNDSIDERA HTLERYVQKVKAELQDSDAFSWRCRVFLSP" CDS complement(join(2373856..2374171,2374267..2374365, 2375071..2378140,2378327..2378660,2378855..2379013)) /locus_tag="TCM_042814" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="IKI3 family protein isoform 1" /protein_id="EOY18197.1" /db_xref="Phytozome:POPTR_0010s21550.1" /db_xref="TAIR:AT5G13680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ADX6" /translation="MKNLKLYSEITSNLELQSEGEVLLFAAYDIESNRFFFASSDNLI YTLHLSSFQNERAWTKGPLQAEIDPLGLEPEDVITSFDYLMEKEALIVGTSSGLLLLH NVDGKETEVVGQVEGGVKCISPSPDGDLLGVTTGLGQLLVMTHDWDLLYETALEDHPE GVDVRELDFLSRDVLGSPISWRGDGKYFATLSEMPNSSLKKRLKVWERDTGALHASSE PKELMGAILEWMPSGAKIAAVCDRKPEAGPSIVFYERNGLERSSFCINEPVDATVELL KWNCSSDLLAAIVRSGNYDSVKIWFFCNNHWYLKQEIKYLRKDGVRFMWDPTKPQQLI SWTLGGQVTVYKFIWVAAVIGDSTALVIDDSKILVTPLSLSLLPPPMYLFSLNFPSAV REMAFYSTKGKNCLAALLSNGCLCVAELPAPDTWEELEGKEFSVEPCVSATSLGSFVH LIWLDSHMLLAVSHYGFNHSNCSFQTPSSEDRLCGFYLQEIELACYEDNLPGLLTCSG WHAKVSYQNLLEGLVMGIVPNPAKRCAAFVQFDGGEVFEYTSKLGITRRDLKHDEISF SSSCPWMNVVLVGVSEQSQHLLFGLDDMGRLHVGRRILCSNCSSFSFYSNLADNVITH LILATKQDLLFIVDISDILHGKLELTYENFVHIGSKRKEEDNINYINIWEKGAKVVGV LHGDEAAVILQTNRGNLECIYPRKLVLASIVNALNQKRFKDALLIVRRHRIDFNVIVD YCGLQAFLQSASEFVRQVNNLSYITEFVCAIKTEKMTETLYKKFFSLPYCKEQKDLQA NDLKGSDASLDATNKVSSVLLAIRRALGQQVPESPARELCILTTLARSDPPALEEALE RVKVIREMELLDSDDPRRMNCPSSEEALKHLLWLSVSDAVFEAALGLYDLNLAAIVAL NSQRDPKEFLPFLQELDRLPVLLMRYNIDLRLRRFEKALRHIVSAGDAHFADCMNLVK KNPQLFPLGLQLITDPIKRGQVLEAWGDHLSDEKCFDDAAATYLCCSSLPKALKAYRE CGNWSGVLTVAGLIKLEKDEVMQLAHELCEELQALGKPGEAGKIALEYCGDISVGINL LISARDWEEALRVAFLHRREDLVSEVKNASLDCASSLIDDYKEGLEKVGKYLARYLAV RQRRLLLAAKLQAEERSINDIDDDTASEASSTFSGMSVYTTGTRKSSAASTSSTVASK ARDARRQRSRGKIRPGSPGEEMALVEHLKGMSLTAGAKSELKSLLVSLVMLGKEETAR KLQHVGENFQLSHMAAVRLAEDTMSNDSIDERAHTLERYVQKVKAELQDSDAFSWRCR VFLSP" CDS complement(join(2373856..2374171,2374267..2374365, 2375071..2378140,2378327..2378660,2378855..2379013)) /locus_tag="TCM_042814" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="IKI3 family protein isoform 1" /protein_id="EOY18198.1" /db_xref="Phytozome:POPTR_0010s21550.1" /db_xref="TAIR:AT5G13680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ADX6" /translation="MKNLKLYSEITSNLELQSEGEVLLFAAYDIESNRFFFASSDNLI YTLHLSSFQNERAWTKGPLQAEIDPLGLEPEDVITSFDYLMEKEALIVGTSSGLLLLH NVDGKETEVVGQVEGGVKCISPSPDGDLLGVTTGLGQLLVMTHDWDLLYETALEDHPE GVDVRELDFLSRDVLGSPISWRGDGKYFATLSEMPNSSLKKRLKVWERDTGALHASSE PKELMGAILEWMPSGAKIAAVCDRKPEAGPSIVFYERNGLERSSFCINEPVDATVELL KWNCSSDLLAAIVRSGNYDSVKIWFFCNNHWYLKQEIKYLRKDGVRFMWDPTKPQQLI SWTLGGQVTVYKFIWVAAVIGDSTALVIDDSKILVTPLSLSLLPPPMYLFSLNFPSAV REMAFYSTKGKNCLAALLSNGCLCVAELPAPDTWEELEGKEFSVEPCVSATSLGSFVH LIWLDSHMLLAVSHYGFNHSNCSFQTPSSEDRLCGFYLQEIELACYEDNLPGLLTCSG WHAKVSYQNLLEGLVMGIVPNPAKRCAAFVQFDGGEVFEYTSKLGITRRDLKHDEISF SSSCPWMNVVLVGVSEQSQHLLFGLDDMGRLHVGRRILCSNCSSFSFYSNLADNVITH LILATKQDLLFIVDISDILHGKLELTYENFVHIGSKRKEEDNINYINIWEKGAKVVGV LHGDEAAVILQTNRGNLECIYPRKLVLASIVNALNQKRFKDALLIVRRHRIDFNVIVD YCGLQAFLQSASEFVRQVNNLSYITEFVCAIKTEKMTETLYKKFFSLPYCKEQKDLQA NDLKGSDASLDATNKVSSVLLAIRRALGQQVPESPARELCILTTLARSDPPALEEALE RVKVIREMELLDSDDPRRMNCPSSEEALKHLLWLSVSDAVFEAALGLYDLNLAAIVAL NSQRDPKEFLPFLQELDRLPVLLMRYNIDLRLRRFEKALRHIVSAGDAHFADCMNLVK KNPQLFPLGLQLITDPIKRGQVLEAWGDHLSDEKCFDDAAATYLCCSSLPKALKAYRE CGNWSGVLTVAGLIKLEKDEVMQLAHELCEELQALGKPGEAGKIALEYCGDISVGINL LISARDWEEALRVAFLHRREDLVSEVKNASLDCASSLIDDYKEGLEKVGKYLARYLAV RQRRLLLAAKLQAEERSINDIDDDTASEASSTFSGMSVYTTGTRKSSAASTSSTVASK ARDARRQRSRGKIRPGSPGEEMALVEHLKGMSLTAGAKSELKSLLVSLVMLGKEETAR KLQHVGENFQLSHMAAVRLAEDTMSNDSIDERAHTLERYVQKVKAELQDSDAFSWRCR VFLSP" CDS complement(join(2373856..2374171,2375071..2378054)) /locus_tag="TCM_042814" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="IKI3 family protein isoform 4" /protein_id="EOY18200.1" /db_xref="Phytozome:POPTR_0010s21550.1" /db_xref="TAIR:AT5G13680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ADX6" /translation="MPNSSLKKRLKVWERDTGALHASSEPKELMGAILEWMPSGAKIA AVCDRKPEAGPSIVFYERNGLERSSFCINEPVDATVELLKWNCSSDLLAAIVRSGNYD SVKIWFFCNNHWYLKQEIKYLRKDGVRFMWDPTKPQQLISWTLGGQVTVYKFIWVAAV IGDSTALVIDDSKILVTPLSLSLLPPPMYLFSLNFPSAVREMAFYSTKGKNCLAALLS NGCLCVAELPAPDTWEELEGKEFSVEPCVSATSLGSFVHLIWLDSHMLLAVSHYGFNH SNCSFQTPSSEDRLCGFYLQEIELACYEDNLPGLLTCSGWHAKVSYQNLLEGLVMGIV PNPAKRCAAFVQFDGGEVFEYTSKLGITRRDLKHDEISFSSSCPWMNVVLVGVSEQSQ HLLFGLDDMGRLHVGRRILCSNCSSFSFYSNLADNVITHLILATKQDLLFIVDISDIL HGKLELTYENFVHIGSKRKEEDNINYINIWEKGAKVVGVLHGDEAAVILQTNRGNLEC IYPRKLVLASIVNALNQKRFKDALLIVRRHRIDFNVIVDYCGLQAFLQSASEFVRQVN NLSYITEFVCAIKTEKMTETLYKKFFSLPYCKEQKDLQANDLKGSDASLDATNKVSSV LLAIRRALGQQVPESPARELCILTTLARSDPPALEEALERVKVIREMELLDSDDPRRM NCPSSEEALKHLLWLSVSDAVFEAALGLYDLNLAAIVALNSQRDPKEFLPFLQELDRL PVLLMRYNIDLRLRRFEKALRHIVSAGDAHFADCMNLVKKNPQLFPLGLQLITDPIKR GQVLEAWGDHLSDEKCFDDAAATYLCCSSLPKALKAYRECGNWSGVLTVAGLIKLEKD EVMQLAHELCEELQALGKPGEAGKIALEYCGDISVGINLLISARDWEEALRVAFLHRR EDLVSEVKNASLDCASSLIDDYKEGLEKVGKYLARYLAVRQRRLLLAAKLQAEERSIN DIDDDTASEASSTFSGMSVYTTGPGEEMALVEHLKGMSLTAGAKSELKSLLVSLVMLG KEETARKLQHVGENFQLSHMAAVRLAEDTMSNDSIDERAHTLERYVQKVKAELQDSDA FSWRCRVFLSP" CDS complement(join(2373856..2374171,2374267..2374365, 2375071..2378054)) /locus_tag="TCM_042814" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="IKI3 family protein isoform 5" /protein_id="EOY18201.1" /db_xref="Phytozome:POPTR_0010s21550.1" /db_xref="TAIR:AT5G13680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ADX6" /translation="MPNSSLKKRLKVWERDTGALHASSEPKELMGAILEWMPSGAKIA AVCDRKPEAGPSIVFYERNGLERSSFCINEPVDATVELLKWNCSSDLLAAIVRSGNYD SVKIWFFCNNHWYLKQEIKYLRKDGVRFMWDPTKPQQLISWTLGGQVTVYKFIWVAAV IGDSTALVIDDSKILVTPLSLSLLPPPMYLFSLNFPSAVREMAFYSTKGKNCLAALLS NGCLCVAELPAPDTWEELEGKEFSVEPCVSATSLGSFVHLIWLDSHMLLAVSHYGFNH SNCSFQTPSSEDRLCGFYLQEIELACYEDNLPGLLTCSGWHAKVSYQNLLEGLVMGIV PNPAKRCAAFVQFDGGEVFEYTSKLGITRRDLKHDEISFSSSCPWMNVVLVGVSEQSQ HLLFGLDDMGRLHVGRRILCSNCSSFSFYSNLADNVITHLILATKQDLLFIVDISDIL HGKLELTYENFVHIGSKRKEEDNINYINIWEKGAKVVGVLHGDEAAVILQTNRGNLEC IYPRKLVLASIVNALNQKRFKDALLIVRRHRIDFNVIVDYCGLQAFLQSASEFVRQVN NLSYITEFVCAIKTEKMTETLYKKFFSLPYCKEQKDLQANDLKGSDASLDATNKVSSV LLAIRRALGQQVPESPARELCILTTLARSDPPALEEALERVKVIREMELLDSDDPRRM NCPSSEEALKHLLWLSVSDAVFEAALGLYDLNLAAIVALNSQRDPKEFLPFLQELDRL PVLLMRYNIDLRLRRFEKALRHIVSAGDAHFADCMNLVKKNPQLFPLGLQLITDPIKR GQVLEAWGDHLSDEKCFDDAAATYLCCSSLPKALKAYRECGNWSGVLTVAGLIKLEKD EVMQLAHELCEELQALGKPGEAGKIALEYCGDISVGINLLISARDWEEALRVAFLHRR EDLVSEVKNASLDCASSLIDDYKEGLEKVGKYLARYLAVRQRRLLLAAKLQAEERSIN DIDDDTASEASSTFSGMSVYTTGTRKSSAASTSSTVASKARDARRQRSRGKIRPGSPG EEMALVEHLKGMSLTAGAKSELKSLLVSLVMLGKEETARKLQHVGENFQLSHMAAVRL AEDTMSNDSIDERAHTLERYVQKVKAELQDSDAFSWRCRVFLSP" CDS complement(join(2373986..2374000,2375160..2378140, 2378327..2378660,2378855..2379013)) /locus_tag="TCM_042814" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="IKI3 family protein isoform 8" /protein_id="EOY18203.1" /db_xref="Phytozome:POPTR_0010s21550.1" /db_xref="TAIR:AT5G13680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ADX6" /translation="MKNLKLYSEITSNLELQSEGEVLLFAAYDIESNRFFFASSDNLI YTLHLSSFQNERAWTKGPLQAEIDPLGLEPEDVITSFDYLMEKEALIVGTSSGLLLLH NVDGKETEVVGQVEGGVKCISPSPDGDLLGVTTGLGQLLVMTHDWDLLYETALEDHPE GVDVRELDFLSRDVLGSPISWRGDGKYFATLSEMPNSSLKKRLKVWERDTGALHASSE PKELMGAILEWMPSGAKIAAVCDRKPEAGPSIVFYERNGLERSSFCINEPVDATVELL KWNCSSDLLAAIVRSGNYDSVKIWFFCNNHWYLKQEIKYLRKDGVRFMWDPTKPQQLI SWTLGGQVTVYKFIWVAAVIGDSTALVIDDSKILVTPLSLSLLPPPMYLFSLNFPSAV REMAFYSTKGKNCLAALLSNGCLCVAELPAPDTWEELEGKEFSVEPCVSATSLGSFVH LIWLDSHMLLAVSHYGFNHSNCSFQTPSSEDRLCGFYLQEIELACYEDNLPGLLTCSG WHAKVSYQNLLEGLVMGIVPNPAKRCAAFVQFDGGEVFEYTSKLGITRRDLKHDEISF SSSCPWMNVVLVGVSEQSQHLLFGLDDMGRLHVGRRILCSNCSSFSFYSNLADNVITH LILATKQDLLFIVDISDILHGKLELTYENFVHIGSKRKEEDNINYINIWEKGAKVVGV LHGDEAAVILQTNRGNLECIYPRKLVLASIVNALNQKRFKDALLIVRRHRIDFNVIVD YCGLQAFLQSASEFVRQVNNLSYITEFVCAIKTEKMTETLYKKFFSLPYCKEQKDLQA NDLKGSDASLDATNKVSSVLLAIRRALGQQVPESPARELCILTTLARSDPPALEEALE RVKVIREMELLDSDDPRRMNCPSSEEALKHLLWLSVSDAVFEAALGLYDLNLAAIVAL NSQRDPKEFLPFLQELDRLPVLLMRYNIDLRLRRFEKALRHIVSAGDAHFADCMNLVK KNPQLFPLGLQLITDPIKRGQVLEAWGDHLSDEKCFDDAAATYLCCSSLPKALKAYRE CGNWSGVLTVAGLIKLEKDEVMQLAHELCEELQALGKPGEAGKIALEYCGDISVGINL LISARDWEEALRVAFLHRREDLVSEVKNASLDCASSLIDDYKEGLEKVGKYLARYLAV RQRRLLLAAKLQSQTS" gene complement(2379578..2389457) /locus_tag="TCM_042815" /note="dbxref CacaoGD:Thecc1EG042815" mRNA complement(join(2379578..2382350,2383257..2383382, 2383477..2383575,2384323..2384648,2384722..2385225, 2385320..2386268,2386360..2386524,2387065..2387189, 2387270..2388220,2388632..2388737,2389309..2389457)) /locus_tag="TCM_042815" /product="Zinc finger C3H1 domain-containing protein, putative" /inference="alignment:exonerate-protein:2:frave:gene26653" /inference="similar to AA sequence:ricco:29585.m000587" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc152t5" CDS complement(join(2380578..2382350,2383257..2383382, 2383477..2383575,2384323..2384648,2384722..2385225, 2385320..2386268,2386360..2386524,2387065..2387189, 2387270..2388220,2388632..2388737,2389309..2389434)) /locus_tag="TCM_042815" /note="dbxref ricco:29585.m000587" /codon_start=1 /product="Zinc finger C3H1 domain-containing protein, putative" /protein_id="EOY18204.1" /db_xref="TAIR:AT2G39580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR26" /translation="MEKIDELKAKAMASNSKNANPIKDIEASKTREEGELSDSYDDEN QGCSTAQSSGTVAPPSGPTSAPSAVKSPPPNLAGNTVSGNNLASTVDIPSRQSVPPKS QKNIEKNRLPFESSNPSWYAPSGGSNNLVIRFTDDESGSDSEECSQQRTVEHKANSTT DGCRRPVTSSAPKSNKLGQTSRNITRVIPKKPLSRTFSSSMTKINGGANSRVAGPSAV DQGSRIRYLNPRNKNMASQDLGYDLGVGLNNSKLQDLRQQIALRESELKLKAAQQNKE AVSASTLNLDNGAGRKWTPTSVDAGPLDPKEPDKKRLKISESSFTHLNSDAQQEVHLL KSNLVSKDQQLETNSLRSRDKVDHSKKVVPSKAKSSIKWQKKDDKLVDVSSDDTSKVV KDGVDPQTNLHQSKRTSRQVDLSVLANQTASLTKISPGALPNNLSTAELNHPTKVGLH NPPSSSQSKATRELNLTKGSNGCEVISGDKTLEPYYSEKCQTSQNTANLWNCLGNVNV SGHCNVDIHSLDEIEEKLDKELEEAQEHRRICEIEERNALKAYRKARRALIEANARCR DLYRERELCSARFRSFIVDDSSLVWSSRQHEHSGIGLDTSDNVRENMDLVPMSSHRLQ PDYDGFNEPAYDPNIQCINIAPRTMSHQHENGQNLGSEPCSEPDASTSEPFHHNSNNA ANKVRSPCSPIISADEDEETSPMDHDSVQPSPEYQQKKQKSELTQKNANNESNNQDSL LLEATLRSELFARLGVRTSSKNIDSCDHGEPAVERGAENDVKSEKTQVSNGSLTLSEA EKKQLFDVSGPEKLNEVISVALVQNESQHHEKKNISEFFSAANSEDNGFSIGCHYSAT SIIFSPSSILRSAIGHVRVMAAVTRQREDRFYRKEGAYVNFDEIQWSGQIANSLEEVV RGLSGKEMGSYMCTIAVDPFWPLCMYDIRGKCNNDECPFQHVKDFSKRDASQNADDDS DIAECQLGLMSCQQRSNGSTKPSKCHDVFISPTYIVSLDILKADPHPHESVVTWRNAH CWSKCFSICITLSSLLQKDLPTDEPFLDGSDGRIEVHGSWNRQSSYFQSRNGIVNKLN EALGMNAQSLEMALLILNQEINRMEGMKKALSLLSRALEADPASEILWIVYLLICYTH MTFVGKDDMFSYAVRNNEGSYELWLMYINSRKQLDDRLVAYEAALSALCRGASSSGKD EMHTSACILDLFLQMMDCLCISGNVEKAIQTIYRLLPSTTNSDGPHSPMFTDILTCLT ISDKCVLWVSCIYLVIYRKLPDAVLQRLEREKELLPVEWPSVHLGDDEKKKVVQFLEM VVSCVDSYINIETFKSEIDLRSAQLFALNHIRCMVALDRSECSQNLLEKYIKLYPSCL ELVLISARVQKNDSGNLAFTGFEEALCNWPKEAPGIQCIWNQYADYAQQNGKPDLVKK LMTRWYHSVWKVQYPESENLNAIDGGNSFVSLELGSTSRPEFLAPSSNQMDVMFGYLN QFLYKFLQNDCVEARSAIDLALRAATATGFNLCVKEHAMFLLNDESHEEGIPISWQLN TLNMYLDAARSFAVSEPLSRHFIGKIEKSRVQQLVRNILSPVLVDSYLVNLVLEVWHG PSLLPQNITEPKNLVDFVEAILGIAPSNYELVFSVSKMLSKGDSYSDISPGLLFWVGS TLVNAIFHAVPIPPEYVWVKAADILGNILGTETILKRYYKKALSVYPFSLKLWQCYHK VTKINGDGNAVVEAARERGIELD" gene 2390972..2393746 /locus_tag="TCM_042816" /note="dbxref CacaoGD:Thecc1EG042816" mRNA join(2390972..2391375,2391545..2391658,2391995..2392026, 2392177..2392315,2392597..2392665,2392745..2392929, 2393256..2393746) /locus_tag="TCM_042816" /product="RNA-binding family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00585t00001_C1" mRNA join(2391016..2391375,2391545..2391658,2392597..2392665, 2392745..2392929,2393256..2393631) /locus_tag="TCM_042816" /product="RNA-binding family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021972t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21510.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10678t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00585t00001_C1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc216t6_C2" CDS join(2391202..2391375,2391545..2391658,2391995..2392026, 2392177..2392315,2392597..2392665,2392745..2392929, 2393256..2393442) /locus_tag="TCM_042816" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA-binding family protein, putative isoform 1" /protein_id="EOY18205.1" /db_xref="TAIR:AT5G59950.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTL2" /translation="MSGSLDMSLDEIIRNRGRSEGHFRDSRRKPHGSGPGPGPDRRGP THDPLRTNPYPVRPVPTAAAWHGQLVSSGGSDMEAKLCISNLDYGVSNEDVKLISLDY NSAVRRKGWQPRSWFLVIISILLVGCICLQSVAVQYSSAAGLRYMAVEVVEVLFSEVG DLKRYSINYDRSGRSKGTAEVVFYRQTDALAAIKRYNNVQLDGKPMTIELVGANVVMS APIPPTNSSIVRNPNVAFRRDQEKVGGSRWVHGGGNGPNGGGAGRGFARRRRQGGHVG QKLSAEDLDADLDKYHLEATKIK" CDS join(2391202..2391375,2391545..2391658,2392597..2392665, 2392745..2392929,2393256..2393442) /locus_tag="TCM_042816" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021972t1" /codon_start=1 /product="RNA-binding family protein, putative isoform 2" /protein_id="EOY18206.1" /db_xref="Phytozome:POPTR_0010s21510.1" /db_xref="TAIR:AT5G02530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTL2" /translation="MSGSLDMSLDEIIRNRGRSEGHFRDSRRKPHGSGPGPGPDRRGP THDPLRTNPYPVRPVPTAAAWHGQLVSSGGSDMEAKLCISNLDYGVSNEDVKVLFSEV GDLKRYSINYDRSGRSKGTAEVVFYRQTDALAAIKRYNNVQLDGKPMTIELVGANVVM SAPIPPTNSSIVRNPNVAFRRDQEKVGGSRWVHGGGNGPNGGGAGRGFARRRRQGGHV GQKLSAEDLDADLDKYHLEATKIK" gene complement(2394182..2407397) /locus_tag="TCM_042817" /note="dbxref CacaoGD:Thecc1EG042817" mRNA complement(join(2394182..2394772,2395090..2395127, 2395309..2395751,2396319..2396395,2396629..2397214, 2398432..2399055,2399400..2399675,2400156..2400347, 2401418..2401528,2401694..2401975,2402066..2402117, 2402778..2402957,2403407..2403472,2403940..2404197, 2404363..2404893,2405197..2405247,2406032..2406111, 2406937..2407397)) /locus_tag="TCM_042817" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21500.1" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g047426.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21500.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc548t6; alternateUTRof:Thecc1EG042817t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc550t7_C1" mRNA complement(join(2394348..2394772,2395090..2395178, 2395309..2395751,2396319..2396393,2396698..2397214, 2398432..2399055,2399400..2399675,2400156..2400347, 2401418..2401528,2401694..2401975,2402066..2402117, 2402778..2402957,2403407..2403472,2403940..2404197, 2404363..2404893,2405197..2405247,2406032..2406111, 2406937..2407367)) /locus_tag="TCM_042817" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21500.1" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g047426.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21500.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8231t1_C2; alternateUTRof:Thecc1EG042817t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc550t7_C1" mRNA complement(join(2394348..2394772,2395090..2395187, 2395309..2395751,2396319..2396393,2396698..2397214, 2398432..2399055,2399400..2399675,2400156..2400347, 2401418..2401528,2401694..2401975,2402066..2402117, 2402778..2402957,2403407..2403472,2403940..2404197, 2404363..2404893,2405197..2405247,2406032..2406111, 2406937..2407367)) /locus_tag="TCM_042817" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21500.1" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g047426.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21500.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8231t9_C2; alternateUTRof:Thecc1EG042817t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc550t7_C1" mRNA complement(join(2394348..2394772,2395090..2395187, 2395295..2395751,2396319..2396393,2396698..2397214, 2398432..2399055,2399400..2399675,2400156..2400347, 2401418..2401528,2401694..2401975,2402066..2402117, 2402778..2402957,2403407..2403472,2403940..2404197, 2404363..2404893,2405197..2405247,2406032..2406111, 2406937..2407367)) /locus_tag="TCM_042817" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21500.1" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g047426.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21500.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8231t3_C2; alternateUTRof:Thecc1EG042817t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc550t7_C1" mRNA complement(join(2394348..2394772,2395090..2395751, 2396319..2396393,2396698..2397214,2398432..2399055, 2399400..2399675,2400156..2400347,2401418..2401528, 2401694..2401975,2402066..2402117,2402778..2402957, 2403407..2403472,2403940..2404197,2404363..2404893, 2405197..2405247,2406032..2406111,2406937..2407367)) /locus_tag="TCM_042817" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21500.1" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g047426.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21500.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8231t6_C2; alternateUTRof:Thecc1EG042817t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc550t7_C1" mRNA complement(join(2394398..2394772,2395090..2395229, 2395309..2395751,2396319..2396395,2396629..2396677, 2396714..2397214,2398432..2399055,2399400..2399675, 2400156..2400347,2401418..2401528,2401694..2401975, 2402066..2402117,2402778..2402957,2403407..2403472, 2403940..2404197,2404363..2404893,2405197..2405247, 2406032..2406111,2406937..2407397)) /locus_tag="TCM_042817" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21500.1" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g047426.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21500.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc550t2_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc550t7_C1" mRNA complement(join(2394517..2394772,2395090..2395187, 2395309..2395751,2396319..2397214,2398432..2399055, 2399400..2399675,2400156..2400347,2401418..2401528, 2401694..2401975,2402066..2402117,2402778..2402957, 2403407..2403472,2403940..2404197,2404363..2404893, 2405197..2405247,2406032..2406111,2406937..2407385)) /locus_tag="TCM_042817" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21500.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21500.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc550t7_C1" CDS complement(join(2395677..2395751,2396319..2396395, 2396629..2396677,2396714..2397214,2398432..2399055, 2399400..2399675,2400156..2400347,2401418..2401528, 2401694..2401975,2402066..2402117,2402778..2402957, 2403407..2403472,2403940..2404197,2404363..2404893, 2405197..2405247,2406032..2406111,2406937..2407188)) /locus_tag="TCM_042817" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY18209.1" /db_xref="Phytozome:POPTR_0010s21500.1" /db_xref="TAIR:AT3G12590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTL1" /translation="MTTTFSPGRSPGSSRLQLGAASGVSRLRSSLLKKPPEPLRRAVA DCLSSSSSSFSSPATVAGGVSSYHHGSPSLVLSEASRTLRDYLAAPSTTDQAYIVILE HTIAERERSPAVVGRCVALLKRYLLRYKPSEETLLQIDRFCVNIIAECDNSPNRRLSP WSQSLNQQSGSSTTSTSSASASPSLTVSSFASVALVKSLNYVRSLVAQYIPKRSFQPA AFAGATLASRQSLPTLSSLLSRSFNSQLCPVNGGESSENKDATTLSVSNLSNIEEADG LENPEYIANDVLKWRWLRDHPSSLLFSESDRSVNVQDMRRHNFLEVGAAALLVGDMEA KMKGQPWKYFGTADMPYLDQLLQPSSVTTIAKSASARSHLRAITALKRSKGGPRQIWD DSPASTFRPRARPLFQYRHYSEQQPLRLNPAEVCEVIAAVCSETSSTNTNTMTVSSRL SNNSGKPSIDVAVSVLIKLVIDMYVLDTGTAAPLTLSMLEEMLSSPRTACRVRAFDLI LNLAVHAQLLEPMIIDANSAIEEEYSQELLLNSEDQLTTGIRKIDSAKKLGTSSAIDK FESWILNILYEILLLLVQTEEKEESVWASALSCLLYFVCDRGKIWRNRLKGLDIRVVK ALIETSRVNSWAELVHCKLVCILTNMFYQVPDESTPAAMSTASFLVDQVDLIGGIDFI FIEYSLSTSREERKHLYLVLFDFVLHQINEACISTGVSEYSDDEIQPLATLLALADAP EAFYISVKLGVEGIGELLRRSISAALSRYPNSERLNTLLQNITEKLDTIISSFTHLDK EFLHLKQITKSYKFMDSIEDSSLRNGVGMKAKLAWAILHSLLHSDRISYRQNGYIWLG DLLITEISESKDGSIWSNVKSLQNKITYAGVHDSSVPSDVPLSIWLMCGLLKSKNNII RWGFLVILERLLMRCKFLLDESEMQQSSNSDVGPDHRDTRLEKANAVIDIMSSALSLV AQINETDRMNILKMCDILFSQLCLKVPPSTVMPFGEGIQQTKVFTRSDEIRKTNTAER ISPQASCRGDELMEETDSKSGYGVSSPPIRETASMAALLLRGQAIVPMQLVARVPAAL FYWPLIQLADAAADNIALGVAVGSKGRGNLPGATSDIRATLLLLLIGKCTADPTAFQE VGGEEFELDRSLSKGMPKFTLSFLQRMMTEKPEKYQHMLQKLVFKAQQSNNEKLLENP YLQMRGIFQLSNDL" CDS complement(join(2396705..2397214,2398432..2399055, 2399400..2399675,2400156..2400347,2401418..2401528, 2401694..2401975,2402066..2402117,2402778..2402957, 2403407..2403472,2403940..2404197,2404363..2404893, 2405197..2405247,2406032..2406111,2406937..2407188)) /locus_tag="TCM_042817" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18207.1" /db_xref="Phytozome:POPTR_0010s21500.1" /db_xref="TAIR:AT3G12590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTL1" /translation="MTTTFSPGRSPGSSRLQLGAASGVSRLRSSLLKKPPEPLRRAVA DCLSSSSSSFSSPATVAGGVSSYHHGSPSLVLSEASRTLRDYLAAPSTTDQAYIVILE HTIAERERSPAVVGRCVALLKRYLLRYKPSEETLLQIDRFCVNIIAECDNSPNRRLSP WSQSLNQQSGSSTTSTSSASASPSLTVSSFASVALVKSLNYVRSLVAQYIPKRSFQPA AFAGATLASRQSLPTLSSLLSRSFNSQLCPVNGGESSENKDATTLSVSNLSNIEEADG LENPEYIANDVLKWRWLRDHPSSLLFSESDRSVNVQDMRRHNFLEVGAAALLVGDMEA KMKGQPWKYFGTADMPYLDQLLQPSSVTTIAKSASARSHLRAITALKRSKGGPRQIWD DSPASTFRPRARPLFQYRHYSEQQPLRLNPAEVCEVIAAVCSETSSTNTNTMTVSSRL SNNSGKPSIDVAVSVLIKLVIDMYVLDTGTAAPLTLSMLEEMLSSPRTACRVRAFDLI LNLAVHAQLLEPMIIDANSAIEEEYSQELLLNSEDQLTTGIRKIDSAKKLGTSSAIDK FESWILNILYEILLLLVQTEEKEESVWASALSCLLYFVCDRGKIWRNRLKGLDIRVVK ALIETSRVNSWAELVHCKLVCILTNMFYQVPDESTPAAMSTASFLVDQVDLIGGIDFI FIEYSLSTSREERKHLYLVLFDFVLHQINEACISTGVSEYSDDEIQPLATLLALADAP EAFYISVKLGVEGIGELLRRSISAALSRYPNSERLNTLLQNITEKLDTIISSFTHLDK EFLHLKQITKSYKFMDSIEDSSLRNGVGMKAKLAWAILHSLLHSDRISYRQNGYIWLG DLLITEISESKDGSIWSNVKSLQNKITYAGVHDSSVPSDVPLSIWLMCGLLKSKNNII RWGFLVILERLLMRCKFLLDESEMQQSSNSDVGPDHRDTRLEKANAVIDIMSSALSLV AQINETDRMNILKMCDILFSQLCLKVPPSTVMPFGEGIQQTKVFTRSDEIRKTNTAER ISPQASCRGDELMEETDSKSGYGVSSPPIRETASMAALLLRGQAIVPMQLVARVPAAL FYWPLIQLADAAADNIALGVAVGSKGRGNLPGATSDIRATLLLLLIGKCTADPTAFQE VGGEEFFR" CDS complement(join(2396705..2397214,2398432..2399055, 2399400..2399675,2400156..2400347,2401418..2401528, 2401694..2401975,2402066..2402117,2402778..2402957, 2403407..2403472,2403940..2404197,2404363..2404893, 2405197..2405247,2406032..2406111,2406937..2407188)) /locus_tag="TCM_042817" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18208.1" /db_xref="Phytozome:POPTR_0010s21500.1" /db_xref="TAIR:AT3G12590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTL1" /translation="MTTTFSPGRSPGSSRLQLGAASGVSRLRSSLLKKPPEPLRRAVA DCLSSSSSSFSSPATVAGGVSSYHHGSPSLVLSEASRTLRDYLAAPSTTDQAYIVILE HTIAERERSPAVVGRCVALLKRYLLRYKPSEETLLQIDRFCVNIIAECDNSPNRRLSP WSQSLNQQSGSSTTSTSSASASPSLTVSSFASVALVKSLNYVRSLVAQYIPKRSFQPA AFAGATLASRQSLPTLSSLLSRSFNSQLCPVNGGESSENKDATTLSVSNLSNIEEADG LENPEYIANDVLKWRWLRDHPSSLLFSESDRSVNVQDMRRHNFLEVGAAALLVGDMEA KMKGQPWKYFGTADMPYLDQLLQPSSVTTIAKSASARSHLRAITALKRSKGGPRQIWD DSPASTFRPRARPLFQYRHYSEQQPLRLNPAEVCEVIAAVCSETSSTNTNTMTVSSRL SNNSGKPSIDVAVSVLIKLVIDMYVLDTGTAAPLTLSMLEEMLSSPRTACRVRAFDLI LNLAVHAQLLEPMIIDANSAIEEEYSQELLLNSEDQLTTGIRKIDSAKKLGTSSAIDK FESWILNILYEILLLLVQTEEKEESVWASALSCLLYFVCDRGKIWRNRLKGLDIRVVK ALIETSRVNSWAELVHCKLVCILTNMFYQVPDESTPAAMSTASFLVDQVDLIGGIDFI FIEYSLSTSREERKHLYLVLFDFVLHQINEACISTGVSEYSDDEIQPLATLLALADAP EAFYISVKLGVEGIGELLRRSISAALSRYPNSERLNTLLQNITEKLDTIISSFTHLDK EFLHLKQITKSYKFMDSIEDSSLRNGVGMKAKLAWAILHSLLHSDRISYRQNGYIWLG DLLITEISESKDGSIWSNVKSLQNKITYAGVHDSSVPSDVPLSIWLMCGLLKSKNNII RWGFLVILERLLMRCKFLLDESEMQQSSNSDVGPDHRDTRLEKANAVIDIMSSALSLV AQINETDRMNILKMCDILFSQLCLKVPPSTVMPFGEGIQQTKVFTRSDEIRKTNTAER ISPQASCRGDELMEETDSKSGYGVSSPPIRETASMAALLLRGQAIVPMQLVARVPAAL FYWPLIQLADAAADNIALGVAVGSKGRGNLPGATSDIRATLLLLLIGKCTADPTAFQE VGGEEFFR" CDS complement(join(2396705..2397214,2398432..2399055, 2399400..2399675,2400156..2400347,2401418..2401528, 2401694..2401975,2402066..2402117,2402778..2402957, 2403407..2403472,2403940..2404197,2404363..2404893, 2405197..2405247,2406032..2406111,2406937..2407188)) /locus_tag="TCM_042817" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18210.1" /db_xref="Phytozome:POPTR_0010s21500.1" /db_xref="TAIR:AT3G12590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTL1" /translation="MTTTFSPGRSPGSSRLQLGAASGVSRLRSSLLKKPPEPLRRAVA DCLSSSSSSFSSPATVAGGVSSYHHGSPSLVLSEASRTLRDYLAAPSTTDQAYIVILE HTIAERERSPAVVGRCVALLKRYLLRYKPSEETLLQIDRFCVNIIAECDNSPNRRLSP WSQSLNQQSGSSTTSTSSASASPSLTVSSFASVALVKSLNYVRSLVAQYIPKRSFQPA AFAGATLASRQSLPTLSSLLSRSFNSQLCPVNGGESSENKDATTLSVSNLSNIEEADG LENPEYIANDVLKWRWLRDHPSSLLFSESDRSVNVQDMRRHNFLEVGAAALLVGDMEA KMKGQPWKYFGTADMPYLDQLLQPSSVTTIAKSASARSHLRAITALKRSKGGPRQIWD DSPASTFRPRARPLFQYRHYSEQQPLRLNPAEVCEVIAAVCSETSSTNTNTMTVSSRL SNNSGKPSIDVAVSVLIKLVIDMYVLDTGTAAPLTLSMLEEMLSSPRTACRVRAFDLI LNLAVHAQLLEPMIIDANSAIEEEYSQELLLNSEDQLTTGIRKIDSAKKLGTSSAIDK FESWILNILYEILLLLVQTEEKEESVWASALSCLLYFVCDRGKIWRNRLKGLDIRVVK ALIETSRVNSWAELVHCKLVCILTNMFYQVPDESTPAAMSTASFLVDQVDLIGGIDFI FIEYSLSTSREERKHLYLVLFDFVLHQINEACISTGVSEYSDDEIQPLATLLALADAP EAFYISVKLGVEGIGELLRRSISAALSRYPNSERLNTLLQNITEKLDTIISSFTHLDK EFLHLKQITKSYKFMDSIEDSSLRNGVGMKAKLAWAILHSLLHSDRISYRQNGYIWLG DLLITEISESKDGSIWSNVKSLQNKITYAGVHDSSVPSDVPLSIWLMCGLLKSKNNII RWGFLVILERLLMRCKFLLDESEMQQSSNSDVGPDHRDTRLEKANAVIDIMSSALSLV AQINETDRMNILKMCDILFSQLCLKVPPSTVMPFGEGIQQTKVFTRSDEIRKTNTAER ISPQASCRGDELMEETDSKSGYGVSSPPIRETASMAALLLRGQAIVPMQLVARVPAAL FYWPLIQLADAAADNIALGVAVGSKGRGNLPGATSDIRATLLLLLIGKCTADPTAFQE VGGEEFFR" CDS complement(join(2396705..2397214,2398432..2399055, 2399400..2399675,2400156..2400347,2401418..2401528, 2401694..2401975,2402066..2402117,2402778..2402957, 2403407..2403472,2403940..2404197,2404363..2404893, 2405197..2405247,2406032..2406111,2406937..2407188)) /locus_tag="TCM_042817" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18211.1" /db_xref="Phytozome:POPTR_0010s21500.1" /db_xref="TAIR:AT3G12590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTL1" /translation="MTTTFSPGRSPGSSRLQLGAASGVSRLRSSLLKKPPEPLRRAVA DCLSSSSSSFSSPATVAGGVSSYHHGSPSLVLSEASRTLRDYLAAPSTTDQAYIVILE HTIAERERSPAVVGRCVALLKRYLLRYKPSEETLLQIDRFCVNIIAECDNSPNRRLSP WSQSLNQQSGSSTTSTSSASASPSLTVSSFASVALVKSLNYVRSLVAQYIPKRSFQPA AFAGATLASRQSLPTLSSLLSRSFNSQLCPVNGGESSENKDATTLSVSNLSNIEEADG LENPEYIANDVLKWRWLRDHPSSLLFSESDRSVNVQDMRRHNFLEVGAAALLVGDMEA KMKGQPWKYFGTADMPYLDQLLQPSSVTTIAKSASARSHLRAITALKRSKGGPRQIWD DSPASTFRPRARPLFQYRHYSEQQPLRLNPAEVCEVIAAVCSETSSTNTNTMTVSSRL SNNSGKPSIDVAVSVLIKLVIDMYVLDTGTAAPLTLSMLEEMLSSPRTACRVRAFDLI LNLAVHAQLLEPMIIDANSAIEEEYSQELLLNSEDQLTTGIRKIDSAKKLGTSSAIDK FESWILNILYEILLLLVQTEEKEESVWASALSCLLYFVCDRGKIWRNRLKGLDIRVVK ALIETSRVNSWAELVHCKLVCILTNMFYQVPDESTPAAMSTASFLVDQVDLIGGIDFI FIEYSLSTSREERKHLYLVLFDFVLHQINEACISTGVSEYSDDEIQPLATLLALADAP EAFYISVKLGVEGIGELLRRSISAALSRYPNSERLNTLLQNITEKLDTIISSFTHLDK EFLHLKQITKSYKFMDSIEDSSLRNGVGMKAKLAWAILHSLLHSDRISYRQNGYIWLG DLLITEISESKDGSIWSNVKSLQNKITYAGVHDSSVPSDVPLSIWLMCGLLKSKNNII RWGFLVILERLLMRCKFLLDESEMQQSSNSDVGPDHRDTRLEKANAVIDIMSSALSLV AQINETDRMNILKMCDILFSQLCLKVPPSTVMPFGEGIQQTKVFTRSDEIRKTNTAER ISPQASCRGDELMEETDSKSGYGVSSPPIRETASMAALLLRGQAIVPMQLVARVPAAL FYWPLIQLADAAADNIALGVAVGSKGRGNLPGATSDIRATLLLLLIGKCTADPTAFQE VGGEEFFR" CDS complement(join(2396705..2397214,2398432..2399055, 2399400..2399675,2400156..2400347,2401418..2401528, 2401694..2401975,2402066..2402117,2402778..2402957, 2403407..2403472,2403940..2404197,2404363..2404893, 2405197..2405247,2406032..2406111,2406937..2407188)) /locus_tag="TCM_042817" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18212.1" /db_xref="Phytozome:POPTR_0010s21500.1" /db_xref="TAIR:AT3G12590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTL1" /translation="MTTTFSPGRSPGSSRLQLGAASGVSRLRSSLLKKPPEPLRRAVA DCLSSSSSSFSSPATVAGGVSSYHHGSPSLVLSEASRTLRDYLAAPSTTDQAYIVILE HTIAERERSPAVVGRCVALLKRYLLRYKPSEETLLQIDRFCVNIIAECDNSPNRRLSP WSQSLNQQSGSSTTSTSSASASPSLTVSSFASVALVKSLNYVRSLVAQYIPKRSFQPA AFAGATLASRQSLPTLSSLLSRSFNSQLCPVNGGESSENKDATTLSVSNLSNIEEADG LENPEYIANDVLKWRWLRDHPSSLLFSESDRSVNVQDMRRHNFLEVGAAALLVGDMEA KMKGQPWKYFGTADMPYLDQLLQPSSVTTIAKSASARSHLRAITALKRSKGGPRQIWD DSPASTFRPRARPLFQYRHYSEQQPLRLNPAEVCEVIAAVCSETSSTNTNTMTVSSRL SNNSGKPSIDVAVSVLIKLVIDMYVLDTGTAAPLTLSMLEEMLSSPRTACRVRAFDLI LNLAVHAQLLEPMIIDANSAIEEEYSQELLLNSEDQLTTGIRKIDSAKKLGTSSAIDK FESWILNILYEILLLLVQTEEKEESVWASALSCLLYFVCDRGKIWRNRLKGLDIRVVK ALIETSRVNSWAELVHCKLVCILTNMFYQVPDESTPAAMSTASFLVDQVDLIGGIDFI FIEYSLSTSREERKHLYLVLFDFVLHQINEACISTGVSEYSDDEIQPLATLLALADAP EAFYISVKLGVEGIGELLRRSISAALSRYPNSERLNTLLQNITEKLDTIISSFTHLDK EFLHLKQITKSYKFMDSIEDSSLRNGVGMKAKLAWAILHSLLHSDRISYRQNGYIWLG DLLITEISESKDGSIWSNVKSLQNKITYAGVHDSSVPSDVPLSIWLMCGLLKSKNNII RWGFLVILERLLMRCKFLLDESEMQQSSNSDVGPDHRDTRLEKANAVIDIMSSALSLV AQINETDRMNILKMCDILFSQLCLKVPPSTVMPFGEGIQQTKVFTRSDEIRKTNTAER ISPQASCRGDELMEETDSKSGYGVSSPPIRETASMAALLLRGQAIVPMQLVARVPAAL FYWPLIQLADAAADNIALGVAVGSKGRGNLPGATSDIRATLLLLLIGKCTADPTAFQE VGGEEFFR" CDS complement(join(2396705..2397214,2398432..2399055, 2399400..2399675,2400156..2400347,2401418..2401528, 2401694..2401975,2402066..2402117,2402778..2402957, 2403407..2403472,2403940..2404197,2404363..2404893, 2405197..2405247,2406032..2406111,2406937..2407188)) /locus_tag="TCM_042817" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18213.1" /db_xref="Phytozome:POPTR_0010s21500.1" /db_xref="TAIR:AT3G12590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTL1" /translation="MTTTFSPGRSPGSSRLQLGAASGVSRLRSSLLKKPPEPLRRAVA DCLSSSSSSFSSPATVAGGVSSYHHGSPSLVLSEASRTLRDYLAAPSTTDQAYIVILE HTIAERERSPAVVGRCVALLKRYLLRYKPSEETLLQIDRFCVNIIAECDNSPNRRLSP WSQSLNQQSGSSTTSTSSASASPSLTVSSFASVALVKSLNYVRSLVAQYIPKRSFQPA AFAGATLASRQSLPTLSSLLSRSFNSQLCPVNGGESSENKDATTLSVSNLSNIEEADG LENPEYIANDVLKWRWLRDHPSSLLFSESDRSVNVQDMRRHNFLEVGAAALLVGDMEA KMKGQPWKYFGTADMPYLDQLLQPSSVTTIAKSASARSHLRAITALKRSKGGPRQIWD DSPASTFRPRARPLFQYRHYSEQQPLRLNPAEVCEVIAAVCSETSSTNTNTMTVSSRL SNNSGKPSIDVAVSVLIKLVIDMYVLDTGTAAPLTLSMLEEMLSSPRTACRVRAFDLI LNLAVHAQLLEPMIIDANSAIEEEYSQELLLNSEDQLTTGIRKIDSAKKLGTSSAIDK FESWILNILYEILLLLVQTEEKEESVWASALSCLLYFVCDRGKIWRNRLKGLDIRVVK ALIETSRVNSWAELVHCKLVCILTNMFYQVPDESTPAAMSTASFLVDQVDLIGGIDFI FIEYSLSTSREERKHLYLVLFDFVLHQINEACISTGVSEYSDDEIQPLATLLALADAP EAFYISVKLGVEGIGELLRRSISAALSRYPNSERLNTLLQNITEKLDTIISSFTHLDK EFLHLKQITKSYKFMDSIEDSSLRNGVGMKAKLAWAILHSLLHSDRISYRQNGYIWLG DLLITEISESKDGSIWSNVKSLQNKITYAGVHDSSVPSDVPLSIWLMCGLLKSKNNII RWGFLVILERLLMRCKFLLDESEMQQSSNSDVGPDHRDTRLEKANAVIDIMSSALSLV AQINETDRMNILKMCDILFSQLCLKVPPSTVMPFGEGIQQTKVFTRSDEIRKTNTAER ISPQASCRGDELMEETDSKSGYGVSSPPIRETASMAALLLRGQAIVPMQLVARVPAAL FYWPLIQLADAAADNIALGVAVGSKGRGNLPGATSDIRATLLLLLIGKCTADPTAFQE VGGEEFFR" mobile_element complement(2407757..2407946) /note="source:CACAO_PIF_E119_scaffold_3 2083 2283" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2407926..2408124 /note="source:scaffold_9_CACTA_0942 5134 5361" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2408574..2408631 /note="source:MITE_Unknow_2_15 642 699" /mobile_element_type="transposon:TIR/MITE" mobile_element 2408632..2408661 /note="source:CACAO_Mariner_E176_scaffold_6 2224 2305" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 2410974..2411468 /note="source:scaffold_1_CACTA_0016 7755 8274" /mobile_element_type="transposon:TIR/CACTA" gene complement(2412218..2420215) /locus_tag="TCM_042818" /note="dbxref CacaoGD:Thecc1EG042818" mRNA complement(join(2412218..2412704,2412806..2413296, 2419776..2419839,2419911..2420067)) /locus_tag="TCM_042818" /product="Carnitine racemase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020837t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc8975t8; alternateUTRof:Thecc1EG042818t1; inference alignment:Newbler:10:TSA:cgbaB_g00755t00002" mRNA complement(join(2412218..2412704,2412806..2413296, 2419090..2419338)) /locus_tag="TCM_042818" /product="Carnitine racemase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020837t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21490.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7923t2; alternateUTRof:Thecc1EG042818t1; inference alignment:Newbler:10:TSA:cgbaB_g00755t00002" mRNA complement(join(2412218..2412704,2412806..2413296, 2419090..2419193,2419309..2419337)) /locus_tag="TCM_042818" /product="Carnitine racemase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020837t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21490.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7923t1; alternateUTRof:Thecc1EG042818t1; inference alignment:Newbler:10:TSA:cgbaB_g00755t00002" mRNA complement(join(2412218..2412704,2412806..2413296, 2417824..2417916)) /locus_tag="TCM_042818" /product="Carnitine racemase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020837t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21490.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7636t3; alternateUTRof:Thecc1EG042818t1; inference alignment:Newbler:10:TSA:cgbaB_g00755t00002" mRNA complement(join(2412300..2412704,2412806..2413296, 2420042..2420215)) /locus_tag="TCM_042818" /product="Carnitine racemase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020837t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21490.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00755t00003; alternateUTRof:Thecc1EG042818t1; inference alignment:Newbler:10:TSA:cgbaB_g00755t00002" mRNA complement(join(2412300..2412704,2412806..2413296, 2419776..2419839,2419911..2419960,2420042..2420110)) /locus_tag="TCM_042818" /product="Carnitine racemase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020837t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21490.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00755t00002; inference alignment:Newbler:10:TSA:cgbaB_g00755t00002" mRNA complement(join(2412312..2412704,2412806..2413296, 2419776..2419839,2420042..2420193)) /locus_tag="TCM_042818" /product="Carnitine racemase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020837t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21490.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00654t00001; alternateUTRof:Thecc1EG042818t1; inference alignment:Newbler:10:TSA:cgbaB_g00755t00002" CDS complement(join(2412416..2412704,2412806..2413251)) /locus_tag="TCM_042818" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020837t1" /codon_start=1 /product="Carnitine racemase, putative isoform 1" /protein_id="EOY18214.1" /db_xref="Phytozome:POPTR_0010s21490.1" /db_xref="TAIR:AT1G65520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR76" /translation="MCMCTVEKKGNLFILTLTGEDEHRLNPTRIDAIRSALNRIRSDS TSHSCSALITSAQGKFFSNGYDLAWAGSSPDKIRLMSSKLRALVADLISFPMPTIAAV TGHACAGGFILAFSHDYVVMRKDRGFLYMSEMDIGLKIPAWFMALISCKIGDPVVRRE VVLKAKKLTAEQGVKRGIVDAAYDSAEETVKGAIELGEKLTQKGWNKQVYSENRKQLY KEILDQLGVDETTDDLNKVSIAASKL" CDS complement(join(2412416..2412704,2412806..2413251)) /locus_tag="TCM_042818" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020837t1" /codon_start=1 /product="Carnitine racemase, putative isoform 1" /protein_id="EOY18215.1" /db_xref="Phytozome:POPTR_0010s21490.1" /db_xref="TAIR:AT1G65520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR76" /translation="MCMCTVEKKGNLFILTLTGEDEHRLNPTRIDAIRSALNRIRSDS TSHSCSALITSAQGKFFSNGYDLAWAGSSPDKIRLMSSKLRALVADLISFPMPTIAAV TGHACAGGFILAFSHDYVVMRKDRGFLYMSEMDIGLKIPAWFMALISCKIGDPVVRRE VVLKAKKLTAEQGVKRGIVDAAYDSAEETVKGAIELGEKLTQKGWNKQVYSENRKQLY KEILDQLGVDETTDDLNKVSIAASKL" CDS complement(join(2412416..2412704,2412806..2413251)) /locus_tag="TCM_042818" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG020837t1" /codon_start=1 /product="Carnitine racemase, putative isoform 1" /protein_id="EOY18216.1" /db_xref="Phytozome:POPTR_0010s21490.1" /db_xref="TAIR:AT1G65520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR76" /translation="MCMCTVEKKGNLFILTLTGEDEHRLNPTRIDAIRSALNRIRSDS TSHSCSALITSAQGKFFSNGYDLAWAGSSPDKIRLMSSKLRALVADLISFPMPTIAAV TGHACAGGFILAFSHDYVVMRKDRGFLYMSEMDIGLKIPAWFMALISCKIGDPVVRRE VVLKAKKLTAEQGVKRGIVDAAYDSAEETVKGAIELGEKLTQKGWNKQVYSENRKQLY KEILDQLGVDETTDDLNKVSIAASKL" CDS complement(join(2412416..2412704,2412806..2413251)) /locus_tag="TCM_042818" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG020837t1" /codon_start=1 /product="Carnitine racemase, putative isoform 1" /protein_id="EOY18217.1" /db_xref="Phytozome:POPTR_0010s21490.1" /db_xref="TAIR:AT1G65520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR76" /translation="MCMCTVEKKGNLFILTLTGEDEHRLNPTRIDAIRSALNRIRSDS TSHSCSALITSAQGKFFSNGYDLAWAGSSPDKIRLMSSKLRALVADLISFPMPTIAAV TGHACAGGFILAFSHDYVVMRKDRGFLYMSEMDIGLKIPAWFMALISCKIGDPVVRRE VVLKAKKLTAEQGVKRGIVDAAYDSAEETVKGAIELGEKLTQKGWNKQVYSENRKQLY KEILDQLGVDETTDDLNKVSIAASKL" CDS complement(join(2412416..2412704,2412806..2413251)) /locus_tag="TCM_042818" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG020837t1" /codon_start=1 /product="Carnitine racemase, putative isoform 1" /protein_id="EOY18218.1" /db_xref="Phytozome:POPTR_0010s21490.1" /db_xref="TAIR:AT1G65520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR76" /translation="MCMCTVEKKGNLFILTLTGEDEHRLNPTRIDAIRSALNRIRSDS TSHSCSALITSAQGKFFSNGYDLAWAGSSPDKIRLMSSKLRALVADLISFPMPTIAAV TGHACAGGFILAFSHDYVVMRKDRGFLYMSEMDIGLKIPAWFMALISCKIGDPVVRRE VVLKAKKLTAEQGVKRGIVDAAYDSAEETVKGAIELGEKLTQKGWNKQVYSENRKQLY KEILDQLGVDETTDDLNKVSIAASKL" CDS complement(join(2412416..2412704,2412806..2413251)) /locus_tag="TCM_042818" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG020837t1" /codon_start=1 /product="Carnitine racemase, putative isoform 1" /protein_id="EOY18219.1" /db_xref="Phytozome:POPTR_0010s21490.1" /db_xref="TAIR:AT1G65520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR76" /translation="MCMCTVEKKGNLFILTLTGEDEHRLNPTRIDAIRSALNRIRSDS TSHSCSALITSAQGKFFSNGYDLAWAGSSPDKIRLMSSKLRALVADLISFPMPTIAAV TGHACAGGFILAFSHDYVVMRKDRGFLYMSEMDIGLKIPAWFMALISCKIGDPVVRRE VVLKAKKLTAEQGVKRGIVDAAYDSAEETVKGAIELGEKLTQKGWNKQVYSENRKQLY KEILDQLGVDETTDDLNKVSIAASKL" CDS complement(join(2412416..2412704,2412806..2413251)) /locus_tag="TCM_042818" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG020837t1" /codon_start=1 /product="Carnitine racemase, putative isoform 1" /protein_id="EOY18220.1" /db_xref="Phytozome:POPTR_0010s21490.1" /db_xref="TAIR:AT1G65520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR76" /translation="MCMCTVEKKGNLFILTLTGEDEHRLNPTRIDAIRSALNRIRSDS TSHSCSALITSAQGKFFSNGYDLAWAGSSPDKIRLMSSKLRALVADLISFPMPTIAAV TGHACAGGFILAFSHDYVVMRKDRGFLYMSEMDIGLKIPAWFMALISCKIGDPVVRRE VVLKAKKLTAEQGVKRGIVDAAYDSAEETVKGAIELGEKLTQKGWNKQVYSENRKQLY KEILDQLGVDETTDDLNKVSIAASKL" mobile_element complement(2419085..2419116) /note="source:scaffold_2_CACTA_0263 5450 5481" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2420525..2420584) /note="source:CACAO_M_E57639_F345_scaffold_9 1403 1462" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2420543..2420662) /note="source:CACAO_M_E69306_F123_scaffold_9 4904 5017" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2421131..2421201) /note="source:CACAO_M_E52005_F12_scaffold_7 926 1000" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2422575..2424815) /locus_tag="TCM_042822" /note="dbxref CacaoGD:Thecc1EG042822" mRNA complement(join(2422575..2422700,2422805..2423317, 2423470..2423562,2424384..2424526,2424679..2424815)) /locus_tag="TCM_042822" /product="Zinc knuckle family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016581001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006788t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016581001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07820t00001" mRNA complement(join(2422673..2422700,2422805..2423317, 2423470..2423559,2424372..2424561)) /locus_tag="TCM_042822" /product="Zinc knuckle family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016581001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034155t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016581001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc688t3; inference alignment:Newbler:10:TSA:cgbaP1_g07820t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc861t1" CDS complement(join(2422697..2422700,2422805..2423317, 2423470..2423562,2424384..2424490)) /locus_tag="TCM_042822" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG006788t1" /codon_start=1 /product="Zinc knuckle family protein isoform 1" /protein_id="EOY18221.1" /db_xref="Phytozome:GSVIVT01016581001" /db_xref="TAIR:AT1G75560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HN80" /translation="MSLNRSRSPPHGKRFRSIERVSYRDAPHSRDRRNHRQDYLCNKC KRPGHFARECPNMTVCNNCRLPGHVAAECNSTTMCWNCKEPGHLANQCPNEPVCHMCG NMGHLARDCINLGLPAHDARLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCLYEP VCNICNISGHVARHCTKSSLSSDMGSPFQNIICRNCGQPGHISRDCVSIVISNNCHGR GHLHYECPSARMYDCLGVRR" CDS complement(join(2422697..2422700,2422805..2423317, 2423470..2423559,2424372..2424490)) /locus_tag="TCM_042822" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034155t1" /codon_start=1 /product="Zinc knuckle family protein isoform 2" /protein_id="EOY18222.1" /db_xref="Phytozome:GSVIVT01016581001" /db_xref="TAIR:AT1G75560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HN80" /translation="MSLNRSRSPPHGKRFRSIERVSYRDAPHSRDRRNHRYEITDYLC NKCKRPGHFARECPNMTVCNNCRLPGHVAAECNSTTMCWNCKEPGHLANQCPNEPVCH MCGNMGHLARDCINLGLPAHDARLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCL YEPVCNICNISGHVARHCTKSSLSSDMGSPFQNIICRNCGQPGHISRDCVSIVISNNC HGRGHLHYECPSARMYDCLGVRR" gene complement(2425285..2431635) /locus_tag="TCM_042823" /note="dbxref CacaoGD:Thecc1EG042823" mRNA complement(join(2425285..2426328,2426441..2426706, 2427893..2428108,2429018..2429110,2429200..2429256, 2429340..2429405,2429529..2429612,2429721..2429903, 2430026..2430114,2430315..2430430,2430986..2431043, 2431125..2431289,2431408..2431635)) /locus_tag="TCM_042823" /product="Actin depolymerizing factor 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05200.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10700t00001_C2" mRNA complement(join(2425285..2426328,2426417..2426706, 2427893..2428108,2429018..2429110,2429200..2429256, 2429340..2429405,2429529..2429612,2429721..2429903, 2430026..2430114,2430315..2430430,2430986..2431043, 2431125..2431289,2431408..2431635)) /locus_tag="TCM_042823" /product="Actin depolymerizing factor 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05200.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016594001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:PASA:2:TSA:puevd3b041341t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g10700t00001_C2" CDS complement(join(2426178..2426328,2426441..2426706, 2427893..2428108,2429018..2429110,2429200..2429256, 2429340..2429405,2429529..2429612,2429721..2429903, 2430026..2430114,2430315..2430430,2430986..2431043, 2431125..2431173)) /locus_tag="TCM_042823" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Actin depolymerizing factor 4 isoform 1" /protein_id="EOY18223.1" /db_xref="Phytozome:POPTR_0008s05210.1" /db_xref="TAIR:AT5G59890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UC71" /translation="MRNALLPPVSSQFYIIGNNEVQMPYLDVLMQMESKGNVHGGGFS MESKIFNNDTQLRDGAFVIPYQSHFNSDLQDYQSGSSNCDNNFQQSMPLTSKLALPQF EQDIQKLQNGRKRPIVVNDQMPLNGTSALNEWKKKNKRKRLPSFEQQQSRQITEAVTE IKQCRMHMPAVRRSQKLSDKITALQKLVSPYGKTDTASVLQEASLYIKLLQEQIQNLF QMLSSSYNSLRAIHPQEIGKKQQDLRSRGLCLVPISFTQKVTKEDQKEKRESKEKRRK KNNKSKRLGGHFQAVIANPKNREKKFIYTFLLPFRSLFFSEEALDFLGLFSLFSSLSR ETMANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPTDSYEAF TASLPADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSKVRSKMIYASSKDRFKREL DGIQVELQATDPTEMGLDVIKSRTT" CDS complement(join(2426437..2426706,2427893..2428108, 2429018..2429110,2429200..2429256,2429340..2429405, 2429529..2429612,2429721..2429903,2430026..2430114, 2430315..2430430,2430986..2431043,2431125..2431173)) /locus_tag="TCM_042823" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Actin depolymerizing factor 4 isoform 2" /protein_id="EOY18224.1" /db_xref="Phytozome:GSVIVT01016594001" /db_xref="TAIR:AT3G46010.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLX5" /translation="MRNALLPPVSSQFYIIGNNEVQMPYLDVLMQMESKGNVHGGGFS MESKIFNNDTQLRDGAFVIPYQSHFNSDLQDYQSGSSNCDNNFQQSMPLTSKLALPQF EQDIQKLQNGRKRPIVVNDQMPLNGTSALNEWKKKNKRKRLPSFEQQQSRQITEAVTE IKQCRMHMPAVRRSQKLSDKITALQKLVSPYGKTDTASVLQEASLYIKLLQEQIQNLF QMLSSSYNSLRAIHPQEIGKKQQDLRSRGLCLVPISFTQKVTKEDQKEKRESKEKRRK KNNKSKRLGGHFQAVIANPKNREKKFIYTFLLPFRSLFFSEEALDFLGLFSLFSSLSR ETMANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPTDSYEAF TASLPADECRYAVYDFDFVTEENCQKSRIIFIAW" mobile_element 2433467..2433595 /note="source:scaffold_4_CACTA_0510 5750 5876" /mobile_element_type="transposon:TIR/CACTA" gene 2434452..2442778 /locus_tag="TCM_042824" /note="dbxref CacaoGD:Thecc1EG042824" mRNA join(2434452..2435016,2437623..2437898,2438005..2438147, 2439617..2439689,2440157..2440257,2440752..2440817, 2441090..2441187,2441477..2441539,2441629..2441721, 2441873..2442778) /locus_tag="TCM_042824" /product="Ras-related small GTP-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041897t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05160.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4089t1" mobile_element 2435293..2436096 /note="source:CACAO_Again_on_S_E38_scaffold_1 1 788" /mobile_element_type="transposon:TIR/hAT" CDS join(2438075..2438147,2439617..2439689,2440157..2440257, 2440752..2440817,2441090..2441187,2441477..2441539, 2441629..2441721,2441873..2441956) /locus_tag="TCM_042824" /note="paralog of Thecc1EG041897t1" /codon_start=1 /product="Ras-related small GTP-binding family protein" /protein_id="EOY18225.1" /db_xref="Phytozome:POPTR_0008s05160.2" /db_xref="TAIR:AT5G59840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P28186" /translation="MAAPPVRARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA KTNLNVEEVFFSIARDIKQRLAESDNRAEPTTLKINQQDPAASSGQAAQKSTCCGS" gene 2443596..2447649 /locus_tag="TCM_042826" /note="dbxref CacaoGD:Thecc1EG042826" mRNA join(2443596..2444298,2445412..2445591,2445669..2445898, 2446025..2446190,2446269..2446340,2446431..2446614, 2446716..2446848,2446971..2446988,2447116..2447621) /locus_tag="TCM_042826" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017779001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021160t2" /inference="similar to AA sequence:Phytozome:GSVIVT01017779001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05333t00001" CDS join(2444157..2444298,2445412..2445591,2445669..2445898, 2446025..2446190,2446269..2446340,2446431..2446614, 2446716..2446848,2446971..2446988,2447116..2447400) /locus_tag="TCM_042826" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021160t2" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY18226.1" /db_xref="Phytozome:GSVIVT01017779001" /db_xref="TAIR:AT3G26700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GNF8" /translation="MNTTIFYKSKQKREGCKFKFPFFAKAAKYSSLSNRNQETPTMEI GQHALQVQCSIEKMPKTVTIVGGAMGALAFLAMVIGFIWFCKSQNKNFSNRNSDTGSS DPTARAEWNRGAGPSSAAGFSLFGTQGRRFTLEELEQATKQFDASNLMGHGSFGSVYK GLLRDTVVAIKRRQGAPQQEFVAEDLDRKLISIYVKQAIYLSEIQHRNLVTLQGYCQE SGSQMLVYEYLPNGSICNHLYDSRMESSARLEFKQRLSIALGAAKGLCHLHGLKPPLV HRNFKTANVLVDENFIAKVADAGVWKLLQRIEEGGPSCTASVTVFQDPEAEASGTFTE MSDVYSFGVFLLELITGQEAVHMDSLASNESLIQWVHEFERSVCFFATFLKVRSRLSS NNFVDHRLVGSFTMEGIRDMIRLTLQCMTFPANCRPRMDKVVLVLEQIHEKEMALTTV MGEGTATITLGSELFASSK" mRNA join(2444603..2444881,2444973..2445254,2445412..2445591, 2445669..2445898,2446064..2446190,2446269..2446340, 2446431..2446614,2446716..2446848,2447146..2447649) /locus_tag="TCM_042826" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017779001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021160t2" /inference="similar to AA sequence:Phytozome:GSVIVT01017779001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b041344t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g05333t00001" mRNA join(<2445421..2445591,2445669..2445898,2446064..2446190, 2446269..2446340,2446431..2446614,2446716..2446848, 2447146..2447350,2447498..>2447546) /locus_tag="TCM_042826" /product="Kinase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017779001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021160t2" /inference="similar to AA sequence:ricco:29726.m004009" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09995t00001; inference alignment:Newbler:10:TSA:cgbaB_g09995t00001; inference alignment:Newbler:10:TSA:cgbaP2_g05333t00001" CDS join(<2445423..2445591,2445669..2445898,2446064..2446190, 2446269..2446340,2446431..2446614,2446716..2446848, 2447146..2447350,2447498..>2447544) /locus_tag="TCM_042826" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29726.m004009; paralog of Thecc1EG021160t2" /codon_start=1 /product="Kinase superfamily protein isoform 3" /protein_id="EOY18228.1" /db_xref="TAIR:AT3G26700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GNF8" /translation="QCSIEKMPKTVTIVGGAMGALAFLAMVIGFIWFCKSQNKNFSNR NSDTGSSDPTARAEWNRGAGPSSAAGFSLFGTQGRRFTLEELEQATKQFDASNLMGHG SFGSVYKGLLRDTVVAIKRRQGAPQQEFVAEAIYLSEIQHRNLVTLQGYCQESGSQML VYEYLPNGSICNHLYDSRMESSARLEFKQRLSIALGAAKGLCHLHGLKPPLVHRNFKT ANVLVDENFIAKVADAGVWKLLQRIEEGGPSCTASVTVFQDPEAEASGTFTEMSDVYS FGVFLLELITGQEAVHMDSLASNESLIQWVRSRLSSNNFVDHRLVGSFTMEGIRDMIR LTLQCMTFPANCRPRMDKVVLVLEQIHEKEMALTTVMGEGDSFRDWDSIKVLKCN" CDS join(2445441..2445591,2445669..2445898,2446064..2446190, 2446269..2446340,2446431..2446614,2446716..2446848, 2447146..2447400) /locus_tag="TCM_042826" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021160t2" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY18227.1" /db_xref="Phytozome:GSVIVT01017779001" /db_xref="TAIR:AT3G26700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GNF8" /translation="MPKTVTIVGGAMGALAFLAMVIGFIWFCKSQNKNFSNRNSDTGS SDPTARAEWNRGAGPSSAAGFSLFGTQGRRFTLEELEQATKQFDASNLMGHGSFGSVY KGLLRDTVVAIKRRQGAPQQEFVAEAIYLSEIQHRNLVTLQGYCQESGSQMLVYEYLP NGSICNHLYDSRMESSARLEFKQRLSIALGAAKGLCHLHGLKPPLVHRNFKTANVLVD ENFIAKVADAGVWKLLQRIEEGGPSCTASVTVFQDPEAEASGTFTEMSDVYSFGVFLL ELITGQEAVHMDSLASNESLIQWVRSRLSSNNFVDHRLVGSFTMEGIRDMIRLTLQCM TFPANCRPRMDKVVLVLEQIHEKEMALTTVMGEGTATITLGSELFASSK" gene 2448802..2456285 /locus_tag="TCM_042828" /note="dbxref CacaoGD:Thecc1EG042828" mRNA join(2448802..2448897,2449718..2449986,2450688..2452349, 2452490..2452716,2452801..2453133,2453588..2453834, 2454004..2454132,2454224..2454439,2454677..2454800, 2455146..2456285) /locus_tag="TCM_042828" /product="2-oxoglutarate dehydrogenase, E1 component isoform 1" /inference="alignment:exonerate- protein:2:ricco:29585.m000607" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042829t1" /inference="similar to AA sequence:ricco:29585.m000607" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc48t6" mRNA join(2449747..2449986,2450688..2452349,2452490..2452716, 2452801..2453133,2453599..2453834,2454004..2454132, 2454224..2454439,2454677..2454800,2455146..2455424) /locus_tag="TCM_042828" /product="2-oxoglutarate dehydrogenase, E1 component isoform 3" /inference="alignment:exonerate- protein:2:ricco:29585.m000607" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042829t1" /inference="similar to AA sequence:ricco:29585.m000607" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc48t3; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc48t6" mRNA join(2449747..2449986,2450688..2452349,2452490..2452716, 2452801..2453133,2453588..2453834,2454004..2454132, 2454224..2454439,2454677..2454867) /locus_tag="TCM_042828" /product="2-oxoglutarate dehydrogenase, E1 component isoform 4" /inference="alignment:exonerate- protein:2:ricco:29585.m000607" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042829t1" /inference="similar to AA sequence:ricco:29585.m000607" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc65t5; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc48t6" mRNA join(2449862..2449986,2450688..2452349,2452490..2452716, 2452801..2453133,2453588..2453834,2454004..2454132, 2454224..2454287,2454682..2454800,2455152..2455782) /locus_tag="TCM_042828" /product="2-oxoglutarate dehydrogenase, E1 component isoform 5" /inference="alignment:exonerate- protein:2:ricco:29585.m000607" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042829t1" /inference="similar to AA sequence:ricco:29585.m000607" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc64t9; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc48t6" mRNA join(2449862..2449986,2450688..2452349,2452490..2452716, 2452801..2453130,2454266..2454439,2454677..2454800, 2455146..2455273) /locus_tag="TCM_042828" /product="2-oxoglutarate dehydrogenase, E1 component isoform 7" /inference="alignment:exonerate- protein:2:ricco:29585.m000607" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042829t1" /inference="similar to AA sequence:ricco:29585.m000607" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc66t11; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc48t6" mRNA join(2449862..2449986,2450688..2452349,2452490..2452716, 2452801..2453133,2453588..2453834,2454004..2454132, 2454224..2454287,2454682..2454867) /locus_tag="TCM_042828" /product="2-oxoglutarate dehydrogenase, E1 component isoform 6" /inference="alignment:exonerate- protein:2:ricco:29585.m000607" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042829t1" /inference="similar to AA sequence:ricco:29585.m000607" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc64t7; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc48t6" mRNA join(2449999..2450100,2450688..2452349,2452490..2452716, 2452801..2453133,2453588..2453834,2454004..2454132, 2454224..2454439,2454677..2454800,2455146..2456065) /locus_tag="TCM_042828" /product="2-oxoglutarate dehydrogenase, E1 component isoform 1" /inference="alignment:exonerate- protein:2:ricco:29585.m000607" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042829t1" /inference="similar to AA sequence:ricco:29585.m000607" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc65t8; alternateUTRof:Thecc1EG042828t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc48t6" mRNA join(2449999..2450100,2450688..2452349,2452490..2452716, 2452801..2453130,2454266..2454439,2454677..2454800, 2455146..2455273) /locus_tag="TCM_042828" /product="2-oxoglutarate dehydrogenase, E1 component isoform 7" /inference="alignment:exonerate- protein:2:ricco:29585.m000607" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042829t1" /inference="similar to AA sequence:ricco:29585.m000607" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc66t4; alternateUTRof:Thecc1EG042828t7; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc48t6" CDS join(2450799..2452349,2452490..2452716,2452801..2453133, 2453588..2453834,2454004..2454132,2454224..2454439, 2454677..2454800,2455146..2455390) /locus_tag="TCM_042828" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29585.m000607; paralog of Thecc1EG042829t1" /codon_start=1 /product="2-oxoglutarate dehydrogenase, E1 component isoform 1" /protein_id="EOY18229.1" /db_xref="TAIR:AT3G55410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZRQ2" /translation="MGWFRAGSSVAKLASRRTLSQGGLYTARSRIVPSQNHYFHTTVF KSKAQSAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPDSVDESWDNFFRNFVG QAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPALYGFT EADLDREFFLGVWRMSGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMNIADREKCNW LRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMK EMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGT GDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDVDRTKN MAVLIHGDGSFAGQGVVYETLHLSALANYTTGGTIHIVVNNQVAFTTDPRAGRSSQYC TDVAKALNAPIFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP SFTQPKMYKIIRNHPSALQIYQNKLLESGQVMKEDIGWISEKVSKILNEEFLASKDYV PKRRDWLSAYWTGFKSPEQLSRVRNTGVKPEILKNVGKAITTLPDNFKPHRAVKKVYD QRAQMIETGEGLDWAIGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGE QYCPLDHVIINQNEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGA QVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERYLLMSGDNPFVIPEM DPTLRTQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMSPKNLLRHKDCKSNL SEFDDVQGHPGFDKQGTRFKRLIKDQNMHSDLEEGIRRLVLCSGKVYYELDDERKKNK ATDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAFSYIAPRLATSMQA LGRGTFEDIKYVGRAPSASTATGFYVVHVKEQTELVQKAIQPEPIKFHAPV" CDS join(2450799..2452349,2452490..2452716,2452801..2453133, 2453588..2453834,2454004..2454132,2454224..2454439, 2454677..2454800,2455146..2455390) /locus_tag="TCM_042828" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29585.m000607; paralog of Thecc1EG042829t1" /codon_start=1 /product="2-oxoglutarate dehydrogenase, E1 component isoform 1" /protein_id="EOY18230.1" /db_xref="TAIR:AT3G55410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZRQ2" /translation="MGWFRAGSSVAKLASRRTLSQGGLYTARSRIVPSQNHYFHTTVF KSKAQSAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPDSVDESWDNFFRNFVG QAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPALYGFT EADLDREFFLGVWRMSGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMNIADREKCNW LRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMK EMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGT GDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDVDRTKN MAVLIHGDGSFAGQGVVYETLHLSALANYTTGGTIHIVVNNQVAFTTDPRAGRSSQYC TDVAKALNAPIFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP SFTQPKMYKIIRNHPSALQIYQNKLLESGQVMKEDIGWISEKVSKILNEEFLASKDYV PKRRDWLSAYWTGFKSPEQLSRVRNTGVKPEILKNVGKAITTLPDNFKPHRAVKKVYD QRAQMIETGEGLDWAIGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGE QYCPLDHVIINQNEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGA QVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERYLLMSGDNPFVIPEM DPTLRTQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMSPKNLLRHKDCKSNL SEFDDVQGHPGFDKQGTRFKRLIKDQNMHSDLEEGIRRLVLCSGKVYYELDDERKKNK ATDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAFSYIAPRLATSMQA LGRGTFEDIKYVGRAPSASTATGFYVVHVKEQTELVQKAIQPEPIKFHAPV" CDS join(2450799..2452349,2452490..2452716,2452801..2453133, 2453588..2453834,2454004..2454132,2454224..2454287, 2454682..2454800,2455152..2455181) /locus_tag="TCM_042828" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29585.m000607; paralog of Thecc1EG042829t1" /codon_start=1 /product="2-oxoglutarate dehydrogenase, E1 component isoform 5" /protein_id="EOY18233.1" /db_xref="TAIR:AT3G55410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZRQ2" /translation="MGWFRAGSSVAKLASRRTLSQGGLYTARSRIVPSQNHYFHTTVF KSKAQSAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPDSVDESWDNFFRNFVG QAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPALYGFT EADLDREFFLGVWRMSGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMNIADREKCNW LRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMK EMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGT GDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDVDRTKN MAVLIHGDGSFAGQGVVYETLHLSALANYTTGGTIHIVVNNQVAFTTDPRAGRSSQYC TDVAKALNAPIFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP SFTQPKMYKIIRNHPSALQIYQNKLLESGQVMKEDIGWISEKVSKILNEEFLASKDYV PKRRDWLSAYWTGFKSPEQLSRVRNTGVKPEILKNVGKAITTLPDNFKPHRAVKKVYD QRAQMIETGEGLDWAIGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGE QYCPLDHVIINQNEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGA QVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERYLLMSGDNPFVIPEM DPTLRTQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMSPKNLLRHKAMSLMM RERRTRLLMLLYVVWSSFARSLMTSSSESLSDIQRLFGAKKNQ" CDS join(2450799..2452349,2452490..2452716,2452801..2453133, 2453588..2453834,2454004..2454132,2454224..2454287, 2454682..2454854) /locus_tag="TCM_042828" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29585.m000607; paralog of Thecc1EG042829t1" /codon_start=1 /product="2-oxoglutarate dehydrogenase, E1 component isoform 6" /protein_id="EOY18234.1" /db_xref="TAIR:AT3G55410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZRQ2" /translation="MGWFRAGSSVAKLASRRTLSQGGLYTARSRIVPSQNHYFHTTVF KSKAQSAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPDSVDESWDNFFRNFVG QAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPALYGFT EADLDREFFLGVWRMSGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMNIADREKCNW LRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMK EMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGT GDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDVDRTKN MAVLIHGDGSFAGQGVVYETLHLSALANYTTGGTIHIVVNNQVAFTTDPRAGRSSQYC TDVAKALNAPIFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP SFTQPKMYKIIRNHPSALQIYQNKLLESGQVMKEDIGWISEKVSKILNEEFLASKDYV PKRRDWLSAYWTGFKSPEQLSRVRNTGVKPEILKNVGKAITTLPDNFKPHRAVKKVYD QRAQMIETGEGLDWAIGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGE QYCPLDHVIINQNEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGA QVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERYLLMSGDNPFVIPEM DPTLRTQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMSPKNLLRHKAMSLMM RERRTRLLMLLYVVWSSFARSLMTSSSESLSDIQVCNTNSDWNLFFSTHGN" CDS join(2450799..2452349,2452490..2452716,2452801..2453133, 2453588..2453834,2454004..2454132,2454224..2454439, 2454677..2454808) /locus_tag="TCM_042828" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29585.m000607; paralog of Thecc1EG042829t1" /codon_start=1 /product="2-oxoglutarate dehydrogenase, E1 component isoform 4" /protein_id="EOY18232.1" /db_xref="TAIR:AT3G55410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZRQ2" /translation="MGWFRAGSSVAKLASRRTLSQGGLYTARSRIVPSQNHYFHTTVF KSKAQSAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPDSVDESWDNFFRNFVG QAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPALYGFT EADLDREFFLGVWRMSGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMNIADREKCNW LRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMK EMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGT GDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDVDRTKN MAVLIHGDGSFAGQGVVYETLHLSALANYTTGGTIHIVVNNQVAFTTDPRAGRSSQYC TDVAKALNAPIFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP SFTQPKMYKIIRNHPSALQIYQNKLLESGQVMKEDIGWISEKVSKILNEEFLASKDYV PKRRDWLSAYWTGFKSPEQLSRVRNTGVKPEILKNVGKAITTLPDNFKPHRAVKKVYD QRAQMIETGEGLDWAIGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGE QYCPLDHVIINQNEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGA QVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERYLLMSGDNPFVIPEM DPTLRTQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMSPKNLLRHKDCKSNL SEFDDVQGHPGFDKQGTRFKRLIKDQNMHSDLEEGIRRLVLCSGKVYYELDDERKKNK ATDVAICRVEQLCPFPYDLIQRELKRYPSM" CDS join(2450799..2452349,2452490..2452716,2452801..2453130, 2454266..2454374) /locus_tag="TCM_042828" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29585.m000607; paralog of Thecc1EG042829t1" /codon_start=1 /product="2-oxoglutarate dehydrogenase, E1 component isoform 7" /protein_id="EOY18235.1" /db_xref="TAIR:AT3G55410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZRQ2" /translation="MGWFRAGSSVAKLASRRTLSQGGLYTARSRIVPSQNHYFHTTVF KSKAQSAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPDSVDESWDNFFRNFVG QAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPALYGFT EADLDREFFLGVWRMSGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMNIADREKCNW LRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMK EMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGT GDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDVDRTKN MAVLIHGDGSFAGQGVVYETLHLSALANYTTGGTIHIVVNNQVAFTTDPRAGRSSQYC TDVAKALNAPIFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP SFTQPKMYKIIRNHPSALQIYQNKLLESGQVMKEDIGWISEKVSKILNEEFLASKDYV PKRRDWLSAYWTGFKSPEQLSRVRNTGVKPEILKNVGKAITTLPDNFKPHRAVKKVYD QRAQMIETGEGLDWAIGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGE QYCPLDHVIINQNEEMFTVSKKTCFVTRTANQIFLNLMMSKATLVLINKEPDLSAS" CDS join(2450799..2452349,2452490..2452716,2452801..2453130, 2454266..2454374) /locus_tag="TCM_042828" /note="encoded by transcript variant 8; alternatively spliced; dbxref ricco:29585.m000607; paralog of Thecc1EG042829t1" /codon_start=1 /product="2-oxoglutarate dehydrogenase, E1 component isoform 7" /protein_id="EOY18236.1" /db_xref="TAIR:AT3G55410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZRQ2" /translation="MGWFRAGSSVAKLASRRTLSQGGLYTARSRIVPSQNHYFHTTVF KSKAQSAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPDSVDESWDNFFRNFVG QAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPALYGFT EADLDREFFLGVWRMSGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMNIADREKCNW LRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMK EMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGT GDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDVDRTKN MAVLIHGDGSFAGQGVVYETLHLSALANYTTGGTIHIVVNNQVAFTTDPRAGRSSQYC TDVAKALNAPIFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP SFTQPKMYKIIRNHPSALQIYQNKLLESGQVMKEDIGWISEKVSKILNEEFLASKDYV PKRRDWLSAYWTGFKSPEQLSRVRNTGVKPEILKNVGKAITTLPDNFKPHRAVKKVYD QRAQMIETGEGLDWAIGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGE QYCPLDHVIINQNEEMFTVSKKTCFVTRTANQIFLNLMMSKATLVLINKEPDLSAS" CDS join(2450799..2452349,2452490..2452716,2452801..2453133, 2453599..2453620) /locus_tag="TCM_042828" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29585.m000607; paralog of Thecc1EG042829t1" /codon_start=1 /product="2-oxoglutarate dehydrogenase, E1 component isoform 3" /protein_id="EOY18231.1" /db_xref="TAIR:AT3G55410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZRQ2" /translation="MGWFRAGSSVAKLASRRTLSQGGLYTARSRIVPSQNHYFHTTVF KSKAQSAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPDSVDESWDNFFRNFVG QAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPALYGFT EADLDREFFLGVWRMSGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMNIADREKCNW LRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMK EMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGT GDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDVDRTKN MAVLIHGDGSFAGQGVVYETLHLSALANYTTGGTIHIVVNNQVAFTTDPRAGRSSQYC TDVAKALNAPIFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP SFTQPKMYKIIRNHPSALQIYQNKLLESGQVMKEDIGWISEKVSKILNEEFLASKDYV PKRRDWLSAYWTGFKSPEQLSRVRNTGVKPEILKNVGKAITTLPDNFKPHRAVKKVYD QRAQMIETGEGLDWAIGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGE QYCPLDHVIINQNEEMFTVSNRVWCARI" gene 2456150..2462312 /locus_tag="TCM_042829" /note="dbxref CacaoGD:Thecc1EG042829" mRNA join(2456150..2456672,2456889..2458525,2458614..2458840, 2458920..2459252,2459888..2460134,2460625..2460753, 2460857..2461072,2461205..2461328,2461530..2462312) /locus_tag="TCM_042829" /product="2-oxoglutarate dehydrogenase, E1 component" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21610.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042828t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s05150.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1598t2" CDS join(2456975..2458525,2458614..2458840,2458920..2459252, 2459888..2460134,2460625..2460753,2460857..2461072, 2461205..2461328,2461530..2461783) /locus_tag="TCM_042829" /note="paralog of Thecc1EG042828t2" /codon_start=1 /product="2-oxoglutarate dehydrogenase, E1 component" /protein_id="EOY18237.1" /db_xref="Phytozome:POPTR_0008s05150.1" /db_xref="TAIR:AT3G55410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZRQ2" /translation="MVWFRASSSVGRLAIRRSLSQGGSYAVRRRNLPSQNRCFHSTIF KRKEQASPVPRAVPLSRLADSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVA QASGSPGVSGQTIHESMRLLLLVRSYQVNGHLKANLDPLCLEEREILDELDPAFYGFT ETDLDREFFIGVWSMSGFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIEDREKCNW LREKIETPIPMQYNKDRRVVILDRLIWSTQFENFLATKMKTAKRFGLEGGETLIPGMK EMFDRAADMGVENIVVGMPHRGRLNVLGNVFRKPLRQIFSEFDKNSKLEDETGLYTGT GDVKYHLGTSYDRPTRGGKRFHLSLVANPSHLEAVDPVVIGKTRAKQYFSNDLDRTRN MAVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRSGRSSQYC TDVAKALNAPIFHVNGDNIEAVVHVCELAAQWRQTFHSDVVVDIVCYRRFGHNEIDEP FFTQPKMYKVIQKHPSALEIYKNKLLESGEVTQEDIDRIHKKVESILSEEFLNSKDYV QQRRDWLSTNWEGFKSPEQLSRIRNTGVNPDILKKVGRAITVLPEDFKPHRAVRKVYE DRARMIETGEGLDWAMGEALAFATLLVEGNHVRLSGQDVERGTFSHRHAMVHHQETGD KYCPLDHVMENQNEEMFTVSNSSLSEFGVLGFELGYSMENPDALVLWEAQFGDFANGA QVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSGENPYEIPQM DPTHRNQIQKCNWQVVNATTPANYFHVLRRQIHREFRKPLIVMSPKNLLRYKFCKSNL SEFDDVQGHEGFDKQGTRFKRLIKDQNHHSDLEKGIRRLVLCSGKVYYELDEERQRLN VNDIAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYTYIVPRLYTAMIG IGRGSVEDIKYVGRAPSAATATGFLKKHQNEQADILRLAMQPEPINCPYSSHSN" gene 2464382..2467062 /locus_tag="TCM_042830" /note="dbxref CacaoGD:Thecc1EG042830" mRNA join(2464382..2464622,2464741..2464803,2465285..2465401, 2465491..2465728,2465854..2466015,2466151..2466302, 2466422..2467062) /locus_tag="TCM_042830" /product="Nodulin MtN21 /EamA-like transporter family protein" /inference="alignment:exonerate- protein:2:TAIR:AT2G39510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042833t1" /inference="similar to AA sequence:ricco:29585.m000609" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1584t1" CDS join(2464438..2464622,2464741..2464803,2465285..2465401, 2465491..2465728,2465854..2466015,2466151..2466302, 2466422..2466635) /locus_tag="TCM_042830" /note="dbxref ricco:29585.m000609; paralog of Thecc1EG042833t1" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein" /protein_id="EOY18238.1" /db_xref="TAIR:AT2G39510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80638" /translation="MAGIFNQAKPFLAVIFLQFGYAGMSIIAKFALNQGMSQHVFVMY RHAIAFLVIAPFAIVLDRKVRPKMTLSIFVKLLLLGLLEPTIDQNLYFTGMKYTSATF TAAMCNVLPAFAFVLAWIFKLEKVHIKKLHSQAKILGTMVTVGGAMLMTLINGPMLNL PWANPNNQHVFSSAAAKQDHIKGAVMIAVGCFCWAGFIILQAITLKSYPAELSLTALI CLVGTIEGSIVALAREAGNAAAWSVHLDVKFLAAVYGGVVCSGVGYYLQAVIMKARGP VFVTAFNPLTMVIVAILGSFVLSEVLYSGRVIGAIVIVIGLYLVLWGKSKDQPSSNLD VDVEPSSDQKMTAMDETKVGPNQDYVVLDVTSNRVNPSDESV" mobile_element complement(2470397..2471904) /note="source:CACAO_M_S_E145582_F17_scaffold_10 1 1508" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2471907..2475683) /note="source:CACAO_M_S_E52042_F309_scaffold_5 1 3832" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2476327..2476783 /note="source:INTACT713_F309_scaffold_9-int 111 581" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2485449..2492942 /locus_tag="TCM_042832" /note="dbxref CacaoGD:Thecc1EG042832" mRNA join(2485449..2485707,2485798..2485860,2485962..2486078, 2486176..2486413,2486560..2486721,2486878..2487029, 2487271..2487457,2488897..2489048,2489168..2489217, 2492583..2492942) /locus_tag="TCM_042832" /product="Nodulin MtN21 /EamA-like transporter family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29585.m000609" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042833t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21630.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08187t00001" CDS join(2485514..2485707,2485798..2485860,2485962..2486078, 2486176..2486413,2486560..2486721,2486878..2487029, 2487271..2487457,2488897..2489048,2489168..2489213) /locus_tag="TCM_042832" /note="paralog of Thecc1EG042833t1" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein, putative" /protein_id="EOY18239.1" /db_xref="Phytozome:POPTR_0010s21630.1" /db_xref="TAIR:AT2G39510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80638" /translation="MEASASMYNKAMPYLAMVFMRFGSAGMPIVAKFALNRGMSQHVL VVYRFAIATLVFAPFAIVFDRKVRPKMTFSVFVQILLLGLLEPTIDQNLYYTGIKYTT ATVATALCNVLPAFVFLLAWACRLEKVDMRKLHCQAKILGTLGTVGGAMIMTLVNGPI LPLPWTKVKNEHQSTVSATKDDPLKGALMILAGCVCWACFVILQAITLKSYPAELSLT TLVCFMGAIEGTIVALVMEGGNAAAWSIHWDSKLFAAAYSGVICSGVAYYVGAMVIQA KGPVFFAAFNPLTMVIVAIMSSFIFSEIMYLGRVIGVIVIVVGLYLVLWGKSKDQHSS DSDSNKAAAAPRSGEQMATIGNETAAVTSNQDFVLLDGVVCSGVAYYLQAVIMKARGP VFVTAFNPLTMVIVAILGSFVLSEVLYLGRVIGAILIVTGLYLV" mobile_element complement(2489580..2490704) /note="source:CACAO_Again_on_E81_scaffold_3 114 1209" /mobile_element_type="transposon:TIR/hAT" mobile_element 2490627..2490714 /note="source:CACAO_Again_on_E5_scaffold_1 5883 5970" /mobile_element_type="transposon:TIR/hAT" gene 2492989..2496310 /locus_tag="TCM_042833" /note="dbxref CacaoGD:Thecc1EG042833" mRNA join(2492989..2493210,2493718..2493965,2494056..2494118, 2494221..2494337,2494435..2494672,2494823..2494984, 2495146..2495297,2495539..2496310) /locus_tag="TCM_042833" /product="Nodulin MtN21 /EamA-like transporter family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042832t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21630.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9040t1" CDS join(2493772..2493965,2494056..2494118,2494221..2494337, 2494435..2494672,2494823..2494984,2495146..2495297, 2495539..2495797) /locus_tag="TCM_042833" /note="paralog of Thecc1EG042832t1" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein, putative" /protein_id="EOY18240.1" /db_xref="Phytozome:POPTR_0010s21630.1" /db_xref="TAIR:AT2G39510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80638" /translation="MESSGSMYNKAMPYLAMVFMRFGSAGMPIVAKFALNRGMSQHVL VVYRFAIATLVLAPFAIVFDRKVRPKMTFSIFVQILLLGLLEPTIDQNLYYTGIKYTT ATVATALCNVLPAFVFLLALACRLEKVDMRKLHCQAKILGTLGTVGGAMIMTLVNGPI LPLPWTKVTNEHQSTVSATKDDPLKGALMILAGCVCWACFVILQAITLKSYPAELSLT TLVCFMGAIEGTIVALVMEGGNAAAWSIHWDSKLFAAVYSGVICSGVAYYVGAMVIQA KGPVFYAAFNPLTMVIVAIMSSFIFSEIMYLGRVIGAIVIVVGLYLVLWGKNKDQHSS DSDSNEEAAAPRSGEQMAAIGTETAVVTSNQDFVLLDVISRAAAAADDESVKEKNQKQ IP" gene 2496359..2501941 /locus_tag="TCM_042834" /note="dbxref CacaoGD:Thecc1EG042834" mRNA join(2496359..2496490,2498808..2499352,2499442..2499504, 2499572..2499688,2499775..2500018,2500100..2500261, 2500333..2500481,2500564..2500781,2501911..2501941) /locus_tag="TCM_042834" /product="Nodulin MtN21 /EamA-like transporter family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042830t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05130.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8885t1" mobile_element 2496658..2497288 /note="source:CACAO_hAT_E1792_scaffold_4 32 1175" /mobile_element_type="transposon:TIR/hAT" CDS join(2499156..2499352,2499442..2499504,2499572..2499688, 2499775..2500018,2500100..2500261,2500333..2500481, 2500564..2500717) /locus_tag="TCM_042834" /note="paralog of Thecc1EG042830t1" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein, putative" /protein_id="EOY18241.1" /db_xref="Phytozome:POPTR_0008s05130.1" /db_xref="TAIR:AT5G13670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQY8" /translation="MESSLPQLFNNAKPFLAVILVQFGYAVMSIIAKFALNQGMSPHV LVAYRMAVASALIAPFAIVLERKSRPKMTLTIFAKIMLISLFEPVLDHNLYYTGLKYT TATFTTAMCNMLPTFTFAMACIFKLERVEIRRVHSQAKVVGTMVTVGGAMVMTLIKGP VLELPWTKGRNHLDQSGASGGHEHDLMKGTLMLMAGCCCWSCFIISQAVILKSYPAKL SLAALICTMGTVEGTILAFAVEWRNTSVWLFHLDSKFIAAIYGGMISAFAVTTLGSVM KKRGPVFVSAFNPLSLVIVAILGSFLLAEEICLGRVIGSIIIVIGLYLVLWGKSKDEP QSKPDGTLVRADQQMATINDGIQSSSP" gene complement(2501945..2513843) /locus_tag="TCM_042835" /note="dbxref CacaoGD:Thecc1EG042835" mRNA complement(join(2501945..2502397,2502491..2502689, 2502846..2504390,2506864..2506970,2507222..2507347, 2513608..2513843)) /locus_tag="TCM_042835" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021999t4" /inference="similar to AA sequence:Phytozome:Glyma02g10480.4" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:PASA:2:TSA:puevd3b041352t1a2; inference alignment:Newbler:10:TSA:cgbaB_g04794t00001" mRNA complement(join(2501945..2502397,2502491..2502689, 2502846..2502914,2502987..2504399,2504554..2504633, 2506864..2506970,2507222..2507347,2513608..2513843)) /locus_tag="TCM_042835" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021999t1" /inference="similar to AA sequence:Phytozome:Glyma02g10480.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04794t00001" mRNA complement(join(2502088..2502397,2502491..2502689, 2502846..2502914,2502987..2504382,2506864..2507044)) /locus_tag="TCM_042835" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021999t1" /inference="similar to AA sequence:Phytozome:Glyma02g10480.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc241t2; inference alignment:Newbler:10:TSA:cgbaB_g04794t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc240t7" mRNA complement(join(2502089..2502397,2502491..2502689, 2502987..2504382,2506864..2507014)) /locus_tag="TCM_042835" /product="Uncharacterized protein isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021999t1" /inference="similar to AA sequence:Phytozome:Glyma02g10480.2" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7870t1_C1; inference alignment:Newbler:10:TSA:cgbaB_g04794t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc240t7" mRNA complement(join(2502089..2502397,2502491..2502689, 2502987..2504390,2506864..2507014)) /locus_tag="TCM_042835" /product="Uncharacterized protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021999t1" /inference="similar to AA sequence:Phytozome:Glyma02g10480.2" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7870t4_C1; inference alignment:Newbler:10:TSA:cgbaB_g04794t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc240t7" mRNA complement(join(2502089..2502399,2502996..2504399, 2506864..2507014)) /locus_tag="TCM_042835" /product="Uncharacterized protein isoform 9" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021999t4" /inference="similar to AA sequence:Phytozome:Glyma02g10480.2" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc245t7_C1; inference alignment:Newbler:10:TSA:cgbaB_g04794t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc240t7" mRNA complement(join(2502089..2502397,2502491..2502689, 2502987..2504399,2506864..2507014)) /locus_tag="TCM_042835" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021999t1" /inference="similar to AA sequence:Phytozome:Glyma02g10480.2" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7870t7_C1; inference alignment:Newbler:10:TSA:cgbaB_g04794t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc240t7" mRNA complement(join(2502112..2502397,2502491..2502689, 2502846..2502914,2502987..2504390,2506864..2506970, 2507222..2507338)) /locus_tag="TCM_042835" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021999t1" /inference="similar to AA sequence:Phytozome:Glyma02g10480.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1818t1; inference alignment:Newbler:10:TSA:cgbaB_g04794t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc240t7" mRNA complement(join(2502112..2502397,2502491..2502689, 2502846..2502914,2502987..2504399,2506864..2506970, 2507222..2507338)) /locus_tag="TCM_042835" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021999t1" /inference="similar to AA sequence:Phytozome:Glyma02g10480.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1818t3; alternateUTRof:Thecc1EG042835t1; inference alignment:Newbler:10:TSA:cgbaB_g04794t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc240t7" CDS complement(join(2502327..2502397,2502491..2502689, 2502987..2504390,2506864..2506866)) /locus_tag="TCM_042835" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG021999t1" /codon_start=1 /product="Uncharacterized protein isoform 7" /protein_id="EOY18248.1" /db_xref="Phytozome:Glyma02g10480.2" /db_xref="TAIR:AT5G13660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM55" /translation="MHKSFWLPRDGGCLTNGEMGYDNSSRTEPKRGHQWFMDAAAPEL FSNKKQAIESVNSRPVSGIADVNVSPWHNASSFQSVSSQLSDRLFGSEPLRTVNLVDR NMSSVDSGNMNMGRKDFDDQYVNSSSAGLSMSHTIEDPSSCFSFGGIRKVKVNQVRDS SNGMPASMGHTYSRGVNSTVSMSTVYSKSDNNAISLGPTYGSGDENTISIGPTFTKAD GNFISMGHTFNKRDGDFISVGHNYNKGNESILSVGQAFEKEDGSFISMGQSYEKGDAN LMSLSSSYGKGQENFISMAPAYGKPNESLISMAPTFDKEEDTIIPMGSSYHKADCNIT AMAPTQGKGESSILSMGQNYKKGESNTISFGGFHDESETNPSGSIISGYDLLMNNQNS AQASEVLSQKELVEVNPNSNVNNAPKHNSRTDANPKHKEPKTAKKVPPNNFPSNVKSL LSTGMLDGVAVKYVSWSREALNAYEFERHANCKTKHPNNHIYFENGKTIYAVVQELKN TPQELLFDVIQNVTGSQINQKNFRIWKASYQAATRELQRIYGKDDVVVSS" CDS complement(join(2502327..2502397,2502491..2502689, 2502846..2502914,2502987..2504390,2506864..2506866)) /locus_tag="TCM_042835" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021999t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY18244.1" /db_xref="Phytozome:Glyma02g10480.2" /db_xref="TAIR:AT5G13660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM55" /translation="MHKSFWLPRDGGCLTNGEMGYDNSSRTEPKRGHQWFMDAAAPEL FSNKKQAIESVNSRPVSGIADVNVSPWHNASSFQSVSSQLSDRLFGSEPLRTVNLVDR NMSSVDSGNMNMGRKDFDDQYVNSSSAGLSMSHTIEDPSSCFSFGGIRKVKVNQVRDS SNGMPASMGHTYSRGVNSTVSMSTVYSKSDNNAISLGPTYGSGDENTISIGPTFTKAD GNFISMGHTFNKRDGDFISVGHNYNKGNESILSVGQAFEKEDGSFISMGQSYEKGDAN LMSLSSSYGKGQENFISMAPAYGKPNESLISMAPTFDKEEDTIIPMGSSYHKADCNIT AMAPTQGKGESSILSMGQNYKKGESNTISFGGFHDESETNPSGSIISGYDLLMNNQNS AQASEVLSQKELVEVNPNSNVNNAPKHNSRTDANPKHKEPKTAKKVPPNNFPSNVKSL LSTGMLDGVAVKYVSWSREKSLKGYIQGTGYMCGCKDCKFEKALNAYEFERHANCKTK HPNNHIYFENGKTIYAVVQELKNTPQELLFDVIQNVTGSQINQKNFRIWKASYQAATR ELQRIYGKDDVVVSS" CDS complement(join(2502327..2502397,2502491..2502689, 2502987..2504399,2506864..2506866)) /locus_tag="TCM_042835" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG021999t1" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY18247.1" /db_xref="Phytozome:Glyma02g10480.2" /db_xref="TAIR:AT5G13660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM55" /translation="MSFQHKSFWLPRDGGCLTNGEMGYDNSSRTEPKRGHQWFMDAAA PELFSNKKQAIESVNSRPVSGIADVNVSPWHNASSFQSVSSQLSDRLFGSEPLRTVNL VDRNMSSVDSGNMNMGRKDFDDQYVNSSSAGLSMSHTIEDPSSCFSFGGIRKVKVNQV RDSSNGMPASMGHTYSRGVNSTVSMSTVYSKSDNNAISLGPTYGSGDENTISIGPTFT KADGNFISMGHTFNKRDGDFISVGHNYNKGNESILSVGQAFEKEDGSFISMGQSYEKG DANLMSLSSSYGKGQENFISMAPAYGKPNESLISMAPTFDKEEDTIIPMGSSYHKADC NITAMAPTQGKGESSILSMGQNYKKGESNTISFGGFHDESETNPSGSIISGYDLLMNN QNSAQASEVLSQKELVEVNPNSNVNNAPKHNSRTDANPKHKEPKTAKKVPPNNFPSNV KSLLSTGMLDGVAVKYVSWSREALNAYEFERHANCKTKHPNNHIYFENGKTIYAVVQE LKNTPQELLFDVIQNVTGSQINQKNFRIWKASYQAATRELQRIYGKDDVVVSS" CDS complement(join(2502327..2502397,2502491..2502689, 2502846..2502914,2502987..2504399,2506864..2506866)) /locus_tag="TCM_042835" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021999t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18243.1" /db_xref="Phytozome:Glyma02g10480.2" /db_xref="TAIR:AT5G13660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM55" /translation="MSFQHKSFWLPRDGGCLTNGEMGYDNSSRTEPKRGHQWFMDAAA PELFSNKKQAIESVNSRPVSGIADVNVSPWHNASSFQSVSSQLSDRLFGSEPLRTVNL VDRNMSSVDSGNMNMGRKDFDDQYVNSSSAGLSMSHTIEDPSSCFSFGGIRKVKVNQV RDSSNGMPASMGHTYSRGVNSTVSMSTVYSKSDNNAISLGPTYGSGDENTISIGPTFT KADGNFISMGHTFNKRDGDFISVGHNYNKGNESILSVGQAFEKEDGSFISMGQSYEKG DANLMSLSSSYGKGQENFISMAPAYGKPNESLISMAPTFDKEEDTIIPMGSSYHKADC NITAMAPTQGKGESSILSMGQNYKKGESNTISFGGFHDESETNPSGSIISGYDLLMNN QNSAQASEVLSQKELVEVNPNSNVNNAPKHNSRTDANPKHKEPKTAKKVPPNNFPSNV KSLLSTGMLDGVAVKYVSWSREKSLKGYIQGTGYMCGCKDCKFEKALNAYEFERHANC KTKHPNNHIYFENGKTIYAVVQELKNTPQELLFDVIQNVTGSQINQKNFRIWKASYQA ATRELQRIYGKDDVVVSS" CDS complement(join(2502327..2502397,2502491..2502689, 2502846..2502914,2502987..2504399,2504554..2504556)) /locus_tag="TCM_042835" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021999t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18242.1" /db_xref="Phytozome:Glyma02g10480.2" /db_xref="TAIR:AT5G13660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM55" /translation="MSFQHKSFWLPRDGGCLTNGEMGYDNSSRTEPKRGHQWFMDAAA PELFSNKKQAIESVNSRPVSGIADVNVSPWHNASSFQSVSSQLSDRLFGSEPLRTVNL VDRNMSSVDSGNMNMGRKDFDDQYVNSSSAGLSMSHTIEDPSSCFSFGGIRKVKVNQV RDSSNGMPASMGHTYSRGVNSTVSMSTVYSKSDNNAISLGPTYGSGDENTISIGPTFT KADGNFISMGHTFNKRDGDFISVGHNYNKGNESILSVGQAFEKEDGSFISMGQSYEKG DANLMSLSSSYGKGQENFISMAPAYGKPNESLISMAPTFDKEEDTIIPMGSSYHKADC NITAMAPTQGKGESSILSMGQNYKKGESNTISFGGFHDESETNPSGSIISGYDLLMNN QNSAQASEVLSQKELVEVNPNSNVNNAPKHNSRTDANPKHKEPKTAKKVPPNNFPSNV KSLLSTGMLDGVAVKYVSWSREKSLKGYIQGTGYMCGCKDCKFEKALNAYEFERHANC KTKHPNNHIYFENGKTIYAVVQELKNTPQELLFDVIQNVTGSQINQKNFRIWKASYQA ATRELQRIYGKDDVVVSS" CDS complement(join(2502327..2502397,2502491..2502689, 2502987..2504339)) /locus_tag="TCM_042835" /note="encoded by transcript variant 8; alternatively spliced; paralog of Thecc1EG021999t1" /codon_start=1 /product="Uncharacterized protein isoform 8" /protein_id="EOY18249.1" /db_xref="Phytozome:Glyma02g10480.2" /db_xref="TAIR:AT5G13660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM55" /translation="MGYDNSSRTEPKRGHQWFMDAAAPELFSNKKQAIESVNSRPVSG IADVNVSPWHNASSFQSVSSQLSDRLFGSEPLRTVNLVDRNMSSVDSGNMNMGRKDFD DQYVNSSSAGLSMSHTIEDPSSCFSFGGIRKVKVNQVRDSSNGMPASMGHTYSRGVNS TVSMSTVYSKSDNNAISLGPTYGSGDENTISIGPTFTKADGNFISMGHTFNKRDGDFI SVGHNYNKGNESILSVGQAFEKEDGSFISMGQSYEKGDANLMSLSSSYGKGQENFISM APAYGKPNESLISMAPTFDKEEDTIIPMGSSYHKADCNITAMAPTQGKGESSILSMGQ NYKKGESNTISFGGFHDESETNPSGSIISGYDLLMNNQNSAQASEVLSQKELVEVNPN SNVNNAPKHNSRTDANPKHKEPKTAKKVPPNNFPSNVKSLLSTGMLDGVAVKYVSWSR EALNAYEFERHANCKTKHPNNHIYFENGKTIYAVVQELKNTPQELLFDVIQNVTGSQI NQKNFRIWKASYQAATRELQRIYGKDDVVVSS" CDS complement(join(2502327..2502397,2502491..2502689, 2502846..2502914,2502987..2504339)) /locus_tag="TCM_042835" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG021999t1" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY18246.1" /db_xref="Phytozome:Glyma02g10480.2" /db_xref="TAIR:AT5G13660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM55" /translation="MGYDNSSRTEPKRGHQWFMDAAAPELFSNKKQAIESVNSRPVSG IADVNVSPWHNASSFQSVSSQLSDRLFGSEPLRTVNLVDRNMSSVDSGNMNMGRKDFD DQYVNSSSAGLSMSHTIEDPSSCFSFGGIRKVKVNQVRDSSNGMPASMGHTYSRGVNS TVSMSTVYSKSDNNAISLGPTYGSGDENTISIGPTFTKADGNFISMGHTFNKRDGDFI SVGHNYNKGNESILSVGQAFEKEDGSFISMGQSYEKGDANLMSLSSSYGKGQENFISM APAYGKPNESLISMAPTFDKEEDTIIPMGSSYHKADCNITAMAPTQGKGESSILSMGQ NYKKGESNTISFGGFHDESETNPSGSIISGYDLLMNNQNSAQASEVLSQKELVEVNPN SNVNNAPKHNSRTDANPKHKEPKTAKKVPPNNFPSNVKSLLSTGMLDGVAVKYVSWSR EKSLKGYIQGTGYMCGCKDCKFEKALNAYEFERHANCKTKHPNNHIYFENGKTIYAVV QELKNTPQELLFDVIQNVTGSQINQKNFRIWKASYQAATRELQRIYGKDDVVVSS" CDS complement(join(2502373..2502399,2502996..2504399, 2506864..2506866)) /locus_tag="TCM_042835" /note="encoded by transcript variant 9; alternatively spliced; paralog of Thecc1EG021999t4" /codon_start=1 /product="Uncharacterized protein isoform 9" /protein_id="EOY18250.1" /db_xref="Phytozome:Glyma02g10480.2" /db_xref="TAIR:AT5G13660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM55" /translation="MSFQHKSFWLPRDGGCLTNGEMGYDNSSRTEPKRGHQWFMDAAA PELFSNKKQAIESVNSRPVSGIADVNVSPWHNASSFQSVSSQLSDRLFGSEPLRTVNL VDRNMSSVDSGNMNMGRKDFDDQYVNSSSAGLSMSHTIEDPSSCFSFGGIRKVKVNQV RDSSNGMPASMGHTYSRGVNSTVSMSTVYSKSDNNAISLGPTYGSGDENTISIGPTFT KADGNFISMGHTFNKRDGDFISVGHNYNKGNESILSVGQAFEKEDGSFISMGQSYEKG DANLMSLSSSYGKGQENFISMAPAYGKPNESLISMAPTFDKEEDTIIPMGSSYHKADC NITAMAPTQGKGESSILSMGQNYKKGESNTISFGGFHDESETNPSGSIISGYDLLMNN QNSAQASEVLSQKELVEVNPNSNVNNAPKHNSRTDANPKHKEPKTAKKVPPNNFPSNV KSLLSTGMLDGVAVKYVSWSIIPSCHP" CDS complement(join(2502954..2504390,2506864..2506866)) /locus_tag="TCM_042835" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021999t4" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY18245.1" /db_xref="Phytozome:Glyma02g10480.4" /db_xref="TAIR:AT5G13660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM55" /translation="MHKSFWLPRDGGCLTNGEMGYDNSSRTEPKRGHQWFMDAAAPEL FSNKKQAIESVNSRPVSGIADVNVSPWHNASSFQSVSSQLSDRLFGSEPLRTVNLVDR NMSSVDSGNMNMGRKDFDDQYVNSSSAGLSMSHTIEDPSSCFSFGGIRKVKVNQVRDS SNGMPASMGHTYSRGVNSTVSMSTVYSKSDNNAISLGPTYGSGDENTISIGPTFTKAD GNFISMGHTFNKRDGDFISVGHNYNKGNESILSVGQAFEKEDGSFISMGQSYEKGDAN LMSLSSSYGKGQENFISMAPAYGKPNESLISMAPTFDKEEDTIIPMGSSYHKADCNIT AMAPTQGKGESSILSMGQNYKKGESNTISFGGFHDESETNPSGSIISGYDLLMNNQNS AQASEVLSQKELVEVNPNSNVNNAPKHNSRTDANPKHKEPKTAKKVPPNNFPSNVKSL LSTGMLDGVAVKYVSWSREVSYFLHLNIH" mobile_element 2508540..2508991 /note="source:scaffold_1_CACTA_0008 1017 1442" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2510909..2510927 /note="source:scaffold_5_CACTA_0614 1 15" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2510928..2511075 /note="source:CACAO_PIF_E54_scaffold_3 2280 2425" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2511076..2511607 /note="source:scaffold_5_CACTA_0614 16 441" /mobile_element_type="transposon:TIR/CACTA" gene 2514168..2514952 /locus_tag="TCM_042836" /note="dbxref CacaoGD:Thecc1EG042836" mRNA 2514168..2514952 /locus_tag="TCM_042836" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29585.m000611" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4076t1" CDS 2514355..2514882 /locus_tag="TCM_042836" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18251.1" /translation="MAGGAALPSLNNSKSFSNGVKFKSKHKTLLLFDFFTIGAIPTGS LDKLKGSCWWLFSLKPALCLLICPPKACPIANSSPQMEHSCVLGLAGGWFSMPPSPSV NLGFLWLARWPPRAWNEGNCRLHVLHSKTRLGILLSMTCSYLFPPPCERSIKQFARAK LFSTSDLSEKLLFMV" mobile_element 2518338..2518373 /note="source:scaffold_4_CACTA_0491 545 580" /mobile_element_type="transposon:TIR/CACTA" gene complement(2527263..2528113) /locus_tag="TCM_042837" /note="dbxref CacaoGD:Thecc1EG042837" mRNA complement(join(2527263..2527677,2527829..2528113)) /locus_tag="TCM_042837" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05100.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g15352t00001" CDS complement(join(2527576..2527677,2527829..2527915)) /locus_tag="TCM_042837" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18252.1" /translation="MANFDAKSLLKDKKFWFASFLIAWAAALQGHMMWMQRQDSFRQK FGTLNQSNDDEQENLSQS" gene complement(2528501..2532473) /locus_tag="TCM_042838" /note="dbxref CacaoGD:Thecc1EG042838" mRNA complement(join(2528501..2529891,2532150..2532473)) /locus_tag="TCM_042838" /product="RNA binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g021710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041901t2" /inference="similar to AA sequence:ricco:28180.m000397" /note="quality class is strong-expresste, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07257t00001" CDS complement(join(2528846..2529891,2532150..2532306)) /locus_tag="TCM_042838" /note="dbxref ricco:28180.m000397; paralog of Thecc1EG041901t2" /codon_start=1 /product="RNA binding protein, putative" /protein_id="EOY18253.1" /db_xref="TAIR:AT3G55350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T165" /translation="MGPIRGFKRRKKAADKKVVDQNVLPSSAAVASSLGSQPQPLDWW DEFSKRISGTLSQSKDSKSFESVFRISRKTFDYICSLVKEDMMARQSSFTDLNGKPLS LNDQVAVALRRLSSGESLSIIGDTFGMNQSTVSQITWRFVEAMEERGLHHLSWPSTEA EMEQIKSKFEKIRGLPNCCGAIDITHVVMTLPTMDPSNNVWFDREKNYSMILQAVVDP EMRFRDVIAGWPGSLSDAIVLRSSGFFRLSEEGKRLNGKKLNISEGTDIREYIIGDAG FPLLPWLFTPYQGKGLSDLQVEFNKRHAATRMVAQMALARLKEMWRIIHGVMWMPDKN RLPRIVLVCCLLHNILIDLEDEVLDDMSLSHHHDTGYRRQNCESLDKSALIMRDKLSL YLTGKLPP" gene complement(2533251..2534685) /locus_tag="TCM_042839" /note="dbxref CacaoGD:Thecc1EG042839" mRNA complement(join(2533251..2534140,2534238..2534307, 2534395..2534685)) /locus_tag="TCM_042839" /product="Domain of Uncharacterized protein function, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041902t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05080.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc2t1" CDS complement(join(2533528..2534140,2534238..2534307, 2534395..2534611)) /locus_tag="TCM_042839" /note="paralog of Thecc1EG041902t1" /codon_start=1 /product="Domain of Uncharacterized protein function, putative" /protein_id="EOY18254.1" /db_xref="Phytozome:POPTR_0008s05080.1" /db_xref="TAIR:AT5G59790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM51" /translation="MASYARLRMELPMQKINQDRKTSPERTMVWVESKSNKERKVSVV YYLSRNGQLEHPHFIEVPLSSPQGLFLKDVIIRLNSLRGEGMANRYSWSSKRSYKNGY VWQDLSKNDFIYPSHGHEYILKGSLLLQTSLSFRSYKTVSSTSSISKNSSETYSSGED SNFPAKIRRKHHSWSEFKELDEHKIYEARTSREFSSKGNNVSTQTDENARQRRVGGEE AEEHQRENGQQTPRPSSYSSSEVPECLNISADIRDQSVENDRPSGRIKASAVLMQLIA CGSRRAKDCGGNANKGMNMLFHG" gene complement(2535761..2538646) /locus_tag="TCM_042840" /note="dbxref CacaoGD:Thecc1EG042840" mRNA complement(join(2535761..2536804,2536892..2536938, 2537280..2537451,2537599..2537670,2537750..2537782, 2538036..2538646)) /locus_tag="TCM_042840" /product="Phragmoplastin interacting protein 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016604001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1790t2" CDS complement(join(2536186..2536804,2536892..2536938, 2537280..2537451,2537599..2537670,2537750..2537782, 2538036..2538457)) /locus_tag="TCM_042840" /codon_start=1 /product="Phragmoplastin interacting protein 1, putative" /protein_id="EOY18255.1" /db_xref="TAIR:AT3G55340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTM7" /translation="MVLSNKKLKQKLRAELLAKKVAEPDADIKNPDSNSEAQSVKSLL DSVTRKPRLSKREKRRQTLSFSKGSNKETEEKGEDVEEVEEEEKKKKKKRKREEDVKE EKGRNKKETKKKKKNNKNKKGKNVSEEQGVLQVENGTESCKDIGIFVVNYTQNVLLER TGLSFNLVDDSCLFISQVREDAATKVYVGGIPYRYTEDDIRYYFEGCGTILDVDCMKF PDTGKFRGIAIISFKTEAAVKEALALDRAEMGGMQLTIQPYKSTRANNKVTGFSPKMV EGYNRIYVGNLSWDITEDDLRKLFSDCDVSSIRFGMDKETGEFRGYAHVDFSDSVSVA MALKLDQEIVCGRPVKISCAVPKNEVKSQSRSHPTRTEVPKSNEAPAVKEAPAIEEAP ASNEALTGNEVPTMGNKADNGGSTVSSGKLRRRTCYECGQKGHISSACPNKKTADTTN TNTN" mobile_element complement(2536220..2536263) /note="source:INTACT2_F1_scaffold_1-int 1430 1472" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2538761..2541344 /locus_tag="TCM_042841" /note="dbxref CacaoGD:Thecc1EG042841" mRNA join(2538761..2538944,2539422..2539618,2539709..2540579, 2540695..2540847,2541148..2541344) /locus_tag="TCM_042841" /product="F-box family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046348t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05060.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS join(2539425..2539618,2539709..2540570) /locus_tag="TCM_042841" /note="paralog of Thecc1EG046348t1" /codon_start=1 /product="F-box family protein" /protein_id="EOY18256.1" /db_xref="Phytozome:POPTR_0008s05060.1" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM50" /translation="MEIKPESNIRFCLTCYEAMPPSGQTGFIKRFTNQLNLIQPLQKV KAKIKHKMTRDNKEIDQDDKEKLDFEHNEVDVISCLPNDVLCRIISFLPFETAVQTSL ISIRWKNLWKMALLKDGTKEEAVTAVFNFLNDFPQLHQPRNNWGLQYNFDQGSVLFVA IAPAGILHLDFSAGKQESQRQFSLSLGRNQRIYDHHQASLSTAFNLKALYLVSVCHVS SEMVSCLSSNIPSLESLTIAKCNGLQSIQLESNSELQKLTVLDCFQLESIRMHFNLQF RLKSFQCRGRVVCFNDCNENPLYSPYPPANYYSPLDLEDAMLDFRQGPGYYGINVHGF KFILQSIRGVITLTLCR" gene 2542591..2545439 /locus_tag="TCM_042842" /note="dbxref CacaoGD:Thecc1EG042842" mRNA join(2542591..2542728,2543270..2543644,2543732..2544521, 2544611..2544775,2544879..2545046,2545129..2545439) /locus_tag="TCM_042842" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016605001" /inference="similar to AA sequence:Phytozome:GSVIVT01016605001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc784t1" CDS join(2543553..2543644,2543732..2544521,2544611..2544775, 2544879..2545046,2545129..2545224) /locus_tag="TCM_042842" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY18257.1" /db_xref="Phytozome:GSVIVT01016605001" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLY4" /translation="MGKKLRKKKKKNRNKKQNQPREINEISNQIENLVLEETNDDFIS RLRDDILCQILSLVPFRCAVQTSLLSTRWRYVWRKAIELQGTIEDVPRVITSLLDPFD KLSCHRRIRFHFRQGSILSTIKDKEELHLNFCADGQETFSHFDWSLELNPQIPISDLS SCIKVLHLKSVNKLTRETVSSVVSKFQLLESLQISECKGLQSLYIEAGSRFRSLVILE CLQLNDVYVFAYNLKELVFQGQLPWFWLKYSPHLECVILDFRYGPGYNPFACENLLSL LLAVKNVKTLTISGWLFKVSISKWLSSAGAIWERKDFLFNNLKELRWIDSSMENHSIA TLVSVLRLCPSLEKLVDPASYCSPSKGECSFWKEYSNRVANTATLDHLNMVKLKGFLG QEDEILLAERLVEPKTPQSGTGMIEVPPAEDCRVIMAYQLDIAL" gene 2545968..2550072 /locus_tag="TCM_042843" /note="dbxref CacaoGD:Thecc1EG042843" mRNA join(2545968..2546007,2546701..2547775,2547882..2548040, 2548158..2548357,2548912..2549028,2549256..2550072) /locus_tag="TCM_042843" /product="F-box family protein, putative" /inference="similar to AA sequence:Phytozome:POPTR_0008s05060.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS join(2547077..2547775,2547882..2548040,2548158..2548357, 2548912..2549028,2549256..2549850) /locus_tag="TCM_042843" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY18258.1" /db_xref="Phytozome:POPTR_0008s05060.1" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM50" /translation="MDLVQDPTLEDAVITVSNFLDFFAELDRPRNNWGFQFDFGQGRV LSVAIAPNNTLRLDFSAGEEEFPWPIDWFSGLCLLQPTHQPSSYTLEIEALDLISLGH LSSKAVSSMVSNFPFLKSLTIAKCNGLQSLDIQGARRLQKLTVFDCLQLQSLHFEGLD LSSVQFRGRLVSFQFAHRPWIFHTFTCEFRLEDAMLDFRQGPGHNCIDRPVLKSMFQS IQSVKSLTLCRWIFEELIWEIFPSLYVNFHFYNLKELWWIDHSAESDNANALLWFLKL CPYLERLYVTIDPKSYNMESTKFSGVVGGINKLNHLKVVRLEGFADSNEEIFFAKRLR PLFKARPVIKTKLNGTCSRSLKSIKFSRLVLRPGENFFVLVMLQLVGSICKFSSADSS QARRLQYLLSGNIRYINACKFQKERRLVVRNKRIYQRLGHECLEYTKLKILSKKRTSY CSILHTPKAHLHSVKDVTHTSVSSYGYGSRINLPYTQKIIQAIHSGSLLNATCQQTEV FRLEIPTEIEGVPSQILRPENTWAEKKAYKDTLLKLAGLFKKNFETFTSYKIGKDNKL TDEILQLVQTFKSGPMTKARNCR" mobile_element 2551549..2551710 /note="source:CACAO_M_S_E66354_F74_scaffold_5 4 189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2551732..2551881 /note="source:CACAO_M_E86045_F74_scaffold_12 2953 3136" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2551944..2554536 /locus_tag="TCM_042844" /note="dbxref CacaoGD:Thecc1EG042844" mRNA join(2551944..2552032,2552379..2552564,2552665..2552857, 2553346..2553517,2553641..2553804,2553937..2554183, 2554263..2554536) /locus_tag="TCM_042844" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(2552494..2552564,2552665..2552857,2553346..2553517, 2553641..2553804,2553937..2554183,2554263..2554279) /locus_tag="TCM_042844" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18259.1" /translation="MGMKNNQKKQRHDPDDNDPSNTARDLDVVDLYPNDFISRLPDDI LDQIVSLLPFQSAVRTTFRSTQWKDFWKEALLASVHDVVTMEDAIFLSASLSRQVPIR DAMLDFRQGPSIYDRINNLSFISVFQGTQFDKSPPPCRWAFEVCNDHLGVPYLSGKSV IRLSELTELWWIDCSMDTDNVNSLLVFLKLSPRLERLYMTIDSESYNIRSTNKFTVKL NEIKKHDHLKLLKLERFAKEKDEILLAKELEPLFKMNPQILAKSKGACLRRLVKVPEQ SLQVQREEVET" mobile_element 2554641..2554689 /note="source:CACAO_M_E1841_F5_scaffold_1 8334 8382" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2554940..2557237 /note="source:scaffold_3_CACTA_0382 9598 11899" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2558099..2558149) /note="source:CACAO_M_E12463_F12_scaffold_3 4586 4636" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2559391..2561285 /locus_tag="TCM_042845" /note="dbxref CacaoGD:Thecc1EG042845" mRNA join(2559391..2559748,2560225..2561285) /locus_tag="TCM_042845" /product="F-box family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042802t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(2559496..2559748,2560225..2561018) /locus_tag="TCM_042845" /note="paralog of Thecc1EG042802t1" /codon_start=1 /product="F-box family protein" /protein_id="EOY18260.1" /translation="MIISESMKTNFVCNVEPFSDNYLSPGRGNPMKAEEKMGRPMKAE GKRGKKNPETEHDPDDSQRNTAKRQNMIQMTAKETMQRNDDSALLAAIAPNDVLHLDF SAGEQGLSRSFNWLLPLNLPARDKWPFPYKHDKLLELNLPLQQFKIKALYLESACCLS SKALTSMVSYLPFLESLTIAKCNGVQSLDIENAARLQKLTVLDCPQLEYFCFGGSSCL KSFQYRGRLVSFRFKPSCKFNSYHSLNEHFYRCGFHLEAAMLDFRQGPLTRWTWDFEM PTSAGPNGFYKICNCGSTTLFQCFKLILNSVGRAESLTMCRWLFEACFSNLSKLSKEN FSFMLLYSYPLITD" mobile_element 2562186..2562747 /note="source:CACAO_M_E85278_F18_scaffold_10 4937 5448" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2564265..2566670 /locus_tag="TCM_042846" /note="dbxref CacaoGD:Thecc1EG042846" mRNA join(2564265..2564352,2564833..2564979,2565081..2565191, 2565301..2565617,2565715..2565879,2565997..2566670) /locus_tag="TCM_042846" /product="F-box family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042801t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05060.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(2564292..2564352,2564833..2564979,2565081..2565191, 2565301..2565617,2565715..2565879,2565997..2566311) /locus_tag="TCM_042846" /note="paralog of Thecc1EG042801t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY18261.1" /db_xref="Phytozome:POPTR_0008s05060.1" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM50" /translation="MGKKRRIKKSNQLKQGHDPDVERPLERSFVASVHDVTMEDAVTA ISSFVDDCEQDRPRNKWGLKVELGHAESCTSLPLAISLVWTWLDAGGTMLQYKEIKIL VSNINAREPHKLVVLDCPQLESVRFEGSNLTSFQYRGRLVLFEFELSSNDDRPIFPNW SPSPFKFQLNDAMLDFRRGPPIYNSFNCNGFKLILKSVKNVNSLTLCRWVFQALISLV LSSLSRDSEIRLYGLTEMWWIDYSMDRDNFNSLLSFLKLCPCLERLHVTIDPESYNMG STKQCTAKVNGLRKLNHLKPLKLEGFANENKEILFAKRLRPFFRMKPVILAKSKGTCL RRLVKELELEKEGKDPYKFKEVKNFYETCHDHAHMKF" mobile_element complement(2567533..2571585) /note="source:CACAO_M_S_E145578_F18_scaffold_10 1 4053" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2575278..2576194) /locus_tag="TCM_042848" /note="dbxref CacaoGD:Thecc1EG042848" mRNA complement(2575278..2576194) /locus_tag="TCM_042848" /product="Agamous-like MADS-box protein A, putative" /inference="alignment:exonerate-protein:2:frave:gene18029" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042799t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031333001" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage" CDS complement(2575449..2576150) /locus_tag="TCM_042848" /note="paralog of Thecc1EG042799t1" /codon_start=1 /product="Agamous-like MADS-box protein A, putative" /protein_id="EOY18262.1" /db_xref="Phytozome:GSVIVT01031333001" /db_xref="TAIR:AT5G48670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UAA8" /translation="MTPRKEKFSYITDDSARKASFRIRKNGLLKKASELSTLCGIEVC VIIYSPYDTQPVVWPSPEGAQSVLSEFKMMLTMDQSTKMMNQESFLRQRIANANQQLQ RQSKDNREKEITQVMFQCLAGQGLESLNMMDLNDLGWLLKQNLEDIDKRIDTLTKASD SQGSVAAASAAMATPEAMLKSGEKVQAESPEREASTEIEDWQQMIEELMHPSDDVGLG LVLPFGDNNPTAFFP" mobile_element complement(2580317..2580601) /note="source:CACAO_M_E34036_F2_scaffold_4 317 605" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2580549..2587269 /locus_tag="TCM_042849" /note="dbxref CacaoGD:Thecc1EG042849" mRNA join(2580549..2580742,2586100..2587269) /locus_tag="TCM_042849" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028840.16" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005365t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc9733t1_G4; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc1172t3_C2" mobile_element complement(2580602..2581604) /note="source:scaffold_4_CACTA_0498 120 1127" /mobile_element_type="transposon:TIR/CACTA" CDS join(2580726..2580742,2586100..2587123) /locus_tag="TCM_042849" /note="paralog of Thecc1EG005365t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18263.1" /translation="MAFNKREWPDYKRKEEWVTRLRRLMSIEVTWRAPWMPRMQVMYK CGDKPWVPLMGPWGAISYAPIMVRRQFGSEQFVPMTHQLDQLEFTYGEPETLKRIEEI AQDWKKTCRVDQGRVTDEVTTGYHTWHDQRVKNVIHPPKNPSKHPVNPEPQDVLLESE LTRKRLEKEMMNMKRRHEDELEEVKKETARKVRVALKERDEWQSKFEEVSVANSSLLA RIQELQSANNALQHEVQRKEQTIQELKNDCDMLETAMEGYKAQYEAVRQEYFQMRERN NSCAQSLQRKEAEMQWILRQMREVAFRARVMADKTEELRREILPKDELSERLISHLKM VRDQYDKVGFSF" mobile_element 2581605..2581831 /note="source:CACAO_M_E44210_F112_scaffold_5 10001 10226" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2581611..2581896) /note="source:scaffold_5_CACTA_0614 6119 6409" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2581899..2582094 /note="source:CACAO_M_E69938_F9_scaffold_9 3971 4160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2583617..2583968 /note="source:INTACT579_F10_scaffold_3-int 4999 5350" /mobile_element_type="retrotransposon:LTR/Copia" gene 2585354..2812295 /locus_tag="TCM_042851" /note="dbxref CacaoGD:Thecc1EG042851" mRNA join(2585354..2585723,2812104..2812295) /locus_tag="TCM_042851" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028840.16" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014077t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1303t2_C2" CDS join(2585402..2585723,2812104..2812144) /locus_tag="TCM_042851" /note="paralog of Thecc1EG014077t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18264.1" /translation="MVGIWEQWRRAHRDDFQNKYGHIAWLLYVPVDDQMLRAIVQFWD PSYRCFVFNKVDMTPTIEEYSSLLRIDHMQPDKIYWRAQKTGHRRKLVKLLGMTTVEV DQHLKTCYMFICIHRNCI" mobile_element complement(2589099..2589594) /note="source:CACAO_M_E58877_F5_scaffold_9 14122 14567" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2590054..2590437) /note="source:INTACT1427F_F390_scaffold_9-int 8552 8935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2591907..2592217) /note="source:CACAO_M_E58877_F5_scaffold_9 12038 12348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2592318..2593161 /note="source:CACAO_M_E3935_F390_scaffold_1 10612 11455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2593574..2594000) /note="source:CACAO_M_E12044_F76_scaffold_2 9208 9634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2595599..2595662 /note="source:INTACT666_F293_scaffold_9-int 14249 14296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2596103..2596238 /note="source:CACAO_M_E44210_F112_scaffold_5 10076 10226" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2596239..2596303) /note="source:scaffold_5_CACTA_0614 6119 6340" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2596306..2596501 /note="source:CACAO_M_E69938_F9_scaffold_9 3971 4160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2596983..2597155) /note="source:CACAO_M_E58877_F5_scaffold_9 6719 6877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2597918..2598711 /note="source:INTACT579_F10_scaffold_3-int 4956 5744" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2598712..2598831) /note="source:scaffold_4_CACTA_0498 1 124" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2598832..2598916) /note="source:CACAO_M_S_E51565_F2_scaffold_4 1 84" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2604298..2608253) /note="source:CACAO_M_E52981_F9_scaffold_8 1 3935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2609807..2609880 /note="source:CACAO_M_S_E16386_F9_scaffold_2 2068 2141" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2610163..2611938 /locus_tag="TCM_042855" /note="dbxref CacaoGD:Thecc1EG042855" mRNA join(2610163..2610575,2610659..2610694,2610835..2610973, 2611205..2611312,2611472..2611938) /locus_tag="TCM_042855" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042859t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05060.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(2610223..2610575,2610659..2610694,2610835..2610973, 2611205..2611312,2611472..2611783) /locus_tag="TCM_042855" /note="paralog of Thecc1EG042859t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18265.1" /db_xref="Phytozome:POPTR_0008s05060.1" /translation="MHDGSLEDAAITVLNFLNDFAELHRPRNKWSFQFDFGQGKSLLA AIASNNTLHLDFSAFKQENPRPFNWLLKLNHPLSEQWLFPYNSNELLEPNGPLPKPHH RLSSYIFKQKICISSYGLQSLDMEDATGWFNLDDTMLDFRQGPGFKHDIDNDSFISSK SIQFIELLTLCRWVFKRLKELWWIDYSTERHNVNSLLCFLKLCPRLRRLYVIIDAKCY NMTSTKRIPGVEMIIELEKLELLKLEGFANENEEINFIKQLTPLFKARPVIITKSNGT CSRCQVELPELEKEGNYAYKFEQVKNLHEKWPHHVHMKL" gene complement(2612582..2615390) /locus_tag="TCM_042856" /note="dbxref CacaoGD:Thecc1EG042856" mRNA complement(join(2612582..2613626,2615142..2615390)) /locus_tag="TCM_042856" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042860t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(2612900..2613626,2615142..2615173)) /locus_tag="TCM_042856" /note="paralog of Thecc1EG042860t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18266.1" /translation="MITTTDIHPFRRHPQTMYQPSVSPDLAPAPTPPPRKADPSYLSR ASAGTAAPENSLLSQSPTSIPYCSFCPFLQVHLPTANDHQSSQSPPSPYYTQPLIGFP PKEPTHQSTRYLPQKLQPSQEHGDESLPQKLLSPEQEGQKQYLDNYHLPSSETLYHLD PQLSGVVSCPTPYQESEYTNLQKKPMKERIPNQLEVPIPDRYDPVTTNNRKSYEQPNG NKQLQTPSNPLPVREEYPPGLEPQRPCCACCSIL" mobile_element 2615513..2615586 /note="source:CACAO_Again_on_S_E75_scaffold_2 7727 7797" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2615520..2618371) /note="source:CACAO_hAT_E453_scaffold_1 3096 5578" /mobile_element_type="transposon:TIR/hAT" mobile_element 2616433..2618759 /note="source:CACAO_hAT_E962_scaffold_2 661 2977" /mobile_element_type="transposon:TIR/hAT" mobile_element 2619298..2620311 /note="source:CACAO_M_E69800_F12_scaffold_9 1626 2663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2622002..2625225) /note="source:INTACT691_F9_scaffold_7-int 457 3684" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2625542..2627765 /locus_tag="TCM_042859" /note="dbxref CacaoGD:Thecc1EG042859" mRNA join(2625542..2625616,2625973..2626234,2626360..2626661, 2627061..2627211,2627371..2627765) /locus_tag="TCM_042859" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042855t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(2626112..2626234,2626360..2626661,2627061..2627211, 2627371..2627682) /locus_tag="TCM_042859" /note="paralog of Thecc1EG042855t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18267.1" /translation="MASMHDGSLEDVAITVLSFLMILQNSIDQETNGVSSLTLAKWPF PYNSNELLEPNRPLPNPRHRLSSYIFKIENLHLISVSCLTSKALASMVSNFLFLDSLI IAKCRGLQSLDMEDATGLRKFIVLDCPQLEHFYFGGSCLRCWISFNTLSRLCLQRLKK LRWIDYSAEKHNSNSLLCFLKLCPRLRRRYVTIDAKSYNMTSAKRIPGNEMIIELQKL ELLKLEGFANENEEINFIKQLTPLFEARPVIIVKSNGTCSWQLIGVPELEKEGNCAYK FEEVKNLHEICPHPVHMKL" gene complement(2627929..2630908) /locus_tag="TCM_042860" /note="dbxref CacaoGD:Thecc1EG042860" mRNA complement(join(2627929..2629356,2630903..2630908)) /locus_tag="TCM_042860" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042856t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS complement(2628600..2629340) /locus_tag="TCM_042860" /note="paralog of Thecc1EG042856t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18268.1" /translation="MYQPSVSPDLAPTPPPRKADPSYLSKASTPPMFHPPKKHSPLGN GAAENSLLSQSPTSIPYCSTCPFLQVHLPTANDHQSSQSPPSPYYTQPLIGFPPKEPT HQSTLYLPQQLQPSQEHGDESLPKKLLSPEQEGQKQYLDNYDLPSSETLYHLDQQLSG VVSCATPYQELEFTNLQKKPIKERIPNPLEVPIPDSDDPVTTNNRKSYEQPNGNKQLQ PMPMPQLLSVEYPPGHEPPSCCTCCSIL" mobile_element complement(2630930..2633624) /note="source:CACAO_Helitron_S_E29_scaffold_3 3269 8237" /mobile_element_type="transposon:Helitron" gene 2631339..2633074 /locus_tag="TCM_042862" /note="dbxref CacaoGD:Thecc1EG042862" mRNA join(2631339..2631431,2632029..2632141,2632287..2632400, 2632871..2632985) /locus_tag="TCM_042862" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032199t1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1648t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1648t1" mRNA join(2631393..2631431,2632029..2632147,2632287..2632394, 2632871..2633074) /locus_tag="TCM_042862" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032199t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03454t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1648t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc22804t1" mRNA join(2631971..2632141,2632287..2632400,2632871..2632974) /locus_tag="TCM_042862" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032199t1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1121t2; alternateUTRof:Thecc1EG042862t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1648t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc22804t1" CDS join(2632067..2632147,2632287..2632394,2632871..2632957) /locus_tag="TCM_042862" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG032199t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18270.1" /translation="MYVLSFKEKIITAAEFVVKDVQLIQVKHFEFDVPNDFLVMGKDW RSIKGNSLVRSKSTQKEVQVKAASIKESQTIYRCAAILISLFNMTTM" CDS join(2632067..2632141,2632287..2632400,2632871..2632957) /locus_tag="TCM_042862" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG032199t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18269.1" /translation="MYVLSFKEKIITAAEFVVKDVQLIQHFEFDVPNDFLVMGKDWRS IKGNSLVRSKSTQKEVQVKVKAASIKESQTIYRCAAILISLFNMTTM" CDS join(2632067..2632141,2632287..2632400,2632871..2632957) /locus_tag="TCM_042862" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG032199t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18271.1" /translation="MYVLSFKEKIITAAEFVVKDVQLIQHFEFDVPNDFLVMGKDWRS IKGNSLVRSKSTQKEVQVKVKAASIKESQTIYRCAAILISLFNMTTM" mobile_element 2635620..2636423 /note="source:CACAO_M_E72867_F9_scaffold_10 1941 2764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2636467..2637167 /note="source:INTACT443_F215_scaffold_4-int 2987 3685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2639450..2641858 /note="source:INTACT456_F19_scaffold_9-int 478 2894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2641859..2644455) /note="source:CACAO_M_E85268_F53_scaffold_10 1 2597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2644456..2644774 /note="source:INTACT805_F19_scaffold_8-int 163 555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2646376..2646799 /note="source:scaffold_3_CACTA_0393 1 460" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2646423..2649233) /note="source:scaffold_2_CACTA_0273 6283 9057" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2649219..2650841 /note="source:scaffold_3_CACTA_0392 3197 4919" /mobile_element_type="transposon:TIR/CACTA" gene complement(2651604..2654284) /locus_tag="TCM_042866" /note="dbxref CacaoGD:Thecc1EG042866" mRNA complement(2651604..2654284) /locus_tag="TCM_042866" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT3G07000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042436t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(2651850..2654063) /locus_tag="TCM_042866" /note="paralog of Thecc1EG042436t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY18272.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT5G22355.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MSLTNSHRNKKKGEMELQLKHFSHEHALIFKEEPTHESDEYACC SGCGKVASGPSFSCMECRFYLHKKCAKVPSEIKHPFHRDRNHNFKLLSSPPYEGTSLC CFCDKLCKNFVYQCSCGLSLHLDCASFSHKIAEKKFEEVDHIAHIDPLISSTEISNEE LKNAKCYGCWKPLLDSAYFSLDCGFCLHRKCAELPLEINHSLHQPRSRLFYFHSSKLF LQFDGTSLRCQICRKTPRGLVYRCLDCKFVLHIECAEIPIKINLPYHRRHPFILQFNS EKFPCQNCQETPKPFAYCCSSCKLAIHVECISPPLVIEDESHQHPFNLFWKQLPFFCD ACGTPGTCISYICLTCGLTVHKKCISLPRVINLPRHKHPINHINFLGEDGLKKKRCRI CDGKVNTDYGVYNCSSCNYICHVICAIEDYKSYIFDESKEIVEQSLGSIISVIKESKV GNNVIATEIRHFSHQHNLVLSDDIEDDKRCDGCILFISAPYYHCSQCDFFLHKSCAEV PRKMKLWFHIHQRPLTLISDFIFVCGVCNYECSGFAYKCELCKSYICLRCALVSSDHA SEGHKHRLVFYENKSAQCNACGERSMVPYWCSDCNFALHDKCLKLPHIARHKCDEHPL KLTYHEDNDYAQHHYCDICEKRRNSKNWFYSCTICDSSAHTDCVLQEYPFIKPGTTYK EGDHSHQPLVIVRKVYHYPDCHICCKPCQDLALECAETGCNYIVHWKCINNSSSV" mobile_element complement(2654328..2659534) /note="source:CACAO_Mariner_E265_scaffold_10 1 5207" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 2660642..2665675 /locus_tag="TCM_042867" /note="dbxref CacaoGD:Thecc1EG042867" mRNA join(2660642..2660740,2662457..2662621,2663623..2663834, 2663912..2664331,2664418..2664733,2664846..2664982, 2665130..2665675) /locus_tag="TCM_042867" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:POPTR_0008s05060.1" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete; weak similarity to F-box family protein" mobile_element 2661285..2661355 /note="source:CACAO_M_S_E66354_F74_scaffold_5 41 106" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(2663746..2663834,2663912..2664331,2664418..2664733, 2664846..2664982,2665130..2665328) /locus_tag="TCM_042867" /note="weak similarity to F-box family protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18273.1" /db_xref="Phytozome:POPTR_0008s05060.1" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM50" /translation="MGRKNRNRKKKQQEELDPDKNSTNIEDIIKNLDLNEQIKDDIIS CLPDDILCRIISFLPFDSAIRTSLLSTRWKNLWKKAFLARDGTIQDTVAAVSCFLNVF YQLRRSDNNWGFQFSYGEGHILSVAVDPDNDTLHLDFSTGEELPREFGIIFLLDRQIH TKQPSPQHSNLTITKCNGLEILDFGVDRLRLRSLTVLDCPQLKKLFIDGCFLCSFRRR GSAPRFSHFICNLVVGYDAMLDFRQGTGNIDIKSYDFTIFRSIEYVESLRLCRWFFET VICRKLQISGENLLFGSLKDLWWIEYSEARNNSDALISFLKFCPRLILAAMVQLKEVL SAEPLIIAKSDRTCLPRLVPEKKKKKGKFPCKFKQGVENLPEVWLTHIHMDL" gene 2666302..2668486 /locus_tag="TCM_042868" /note="dbxref CacaoGD:Thecc1EG042868" mRNA join(2666302..2666474,2666551..2667460,2667574..2667735, 2668004..2668486) /locus_tag="TCM_042868" /product="F-box family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042869t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05060.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(2666350..2666474,2666551..2667460,2667574..2667735, 2668004..2668327) /locus_tag="TCM_042868" /note="paralog of Thecc1EG042869t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY18274.1" /db_xref="Phytozome:POPTR_0008s05060.1" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM50" /translation="MGKKNRNRKKYQWRKKLGLDDQKVFRSIEDDTNIRNISVAIKNL NFEQRNDDIISSLPDEILCHIISFLPFKSAVQTSFLSTRWKDLWRKDFLVRHGTIDDA FIEISSFLHDISGELSYKPRNSWGFQFNLGKSSVLSVAIEPDKKLHLDFSKVKHEFPW QFDWLLEINFPTYNDPHFAWWFARIRKMHTLQSLLSTFKLKTLHLISVSYLTSEAVSS MTKNIKYLESLTIEKCNGLRSLQMKASGSELKKLTILDCQQLQFLHVEGYNIKSFRYR GRLLSLQWGASLGSYWPEYKDYLNFNLEDAMLDCRQGPACTNINSCGFESIFQQLQNA KSLTLCRWVFEALIYPILPHNNKELLFHHLTELWWIDYLKELRYNSNALISFLQLCPH LTRLYITIDSKGYKRTSSNSCSVTVTRLPRLEGLKVVKLEGFPNEREEIILAKRLKQV FNVEPLIIAKSNYRTRVRVLVKENENQKGGEDPCKFIEKRVEDFYEFCPKHVHMGL" gene 2670054..2672372 /locus_tag="TCM_042869" /note="dbxref CacaoGD:Thecc1EG042869" mRNA join(2670054..2670246,2670355..2671264,2671342..2671506, 2671624..2672372) /locus_tag="TCM_042869" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016613001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042868t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05060.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1026t1" CDS join(2670359..2671264,2671342..2671506,2671624..2671953) /locus_tag="TCM_042869" /note="paralog of Thecc1EG042868t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY18275.1" /db_xref="Phytozome:POPTR_0008s05060.1" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM50" /translation="MDFEQRNGDTISSLPEDILCHIISFLPFKSAVQTSFLSTRWKDL WKKNFLVLKGTMDDAFIAISSFLNEFSDQSHQPTSNWGFQFNLGRGSSLSVTVEPDKA LHLDFSNVKHEFPWRFDCWLEINGSSYNDWFDFWWLHYRNCQIHTPQPSPFTFKVKSL HLISVSYLSSRAISSMISNFKLLESLTIKKCNGLRSLHIKAGDSGLKKLTILDCQQLE SLHFKGYNLQSLRYRGRLVCFQCGDGDSSFFWFWPWFNSFWLDDAMLDFRQGPAYNSI FSCGFKSILHRIKGVKSLTLCKWVFEALICPILPSPPFCWERGFHQLTELWWIDYSKE RYNSNALISFLKLCSRLRRLYITIDPKSYRRTNKNNNSVKVITRLQSLEDLKVVKLEG FPNEKVEIMLAKRLKQEFNVEPVIVAKSNYLNCVRLLVKSPDDLLKEGKDPYKFIETR VEHLYDLCPQHVHMGF" gene 2672416..2677442 /locus_tag="TCM_042870" /note="dbxref CacaoGD:Thecc1EG042870" mRNA join(2672416..2674454,2677238..2677442) /locus_tag="TCM_042870" /product="Sucrose transport protein SUC2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g36200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036702t1" /inference="similar to AA sequence:ricco:29728.m000846" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc1183t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1618t1" mobile_element complement(2672464..2672573) /note="source:INTACT752_F321_scaffold_5-int 298 417" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2672594..2672699) /note="source:INTACT579_F10_scaffold_3-int 6128 6235" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2672727..2672797) /note="source:INTACT579_F10_scaffold_3-int 5955 6026" /mobile_element_type="retrotransposon:LTR/Copia" CDS 2672871..2674337 /locus_tag="TCM_042870" /note="dbxref ricco:29728.m000846; paralog of Thecc1EG036702t1" /codon_start=1 /product="Sucrose transport protein SUC2" /protein_id="EOY18276.1" /db_xref="TAIR:AT1G22710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39232" /translation="MEDGLEAPGPLWKIIVVAAIAAGVQFGWALQLSLLTPYVQTLGV PHIWAAFIWLCGPISGLLVQPIVGYNSDRCTSRFGRRRPFIAAGACCVAAAVFLIGFA KDIGHKAGDSLEKNTKPRAVAVFVAGFWILDVANNMLQGPCRALLADLSANNHKRMRV ANECFSFFMAVGNVLGYAAGSYSNLHKIFPFTRTTACDVYCANLKTCFIIHIVFLLLV TITAIISVKETPLSMKQEEEKASTPFVGELLTAFKSLKKPMWILLLVTCLNWIAWFPF LLYDTDWMGREIYGGFVDGNATQQKLYDDGVRAGALGLMINSIVLGFTSLGLENVGRL VGGVTNLWGGVNFILAACLASTVWITKIVEAWRDKHGHLAPPNNIKGPALAIFGLLGI PQAVTYSIPFALTSIYCSTSGGGQGLALGVLNMSIVIPQMFISVVSGPLDAAFGGGNL PAFVLGSIVAAVSALLAIFALPNPPQQVSLSPVMGGGH" mobile_element 2676156..2676202 /note="source:scaffold_8_CACTA_0856 927 973" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2676161..2676210 /note="source:CACAO_M_S_E90022_F9_scaffold_8 3112 3161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2676288..2676588) /note="source:INTACT752_F321_scaffold_5-int 20 323" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(2677580..2679931) /locus_tag="TCM_042871" /note="dbxref CacaoGD:Thecc1EG042871" mRNA complement(join(2677580..2679525,2679649..2679931)) /locus_tag="TCM_042871" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene34192" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042436t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc3413t1" CDS complement(join(2677741..2679525,2679649..2679867)) /locus_tag="TCM_042871" /note="paralog of Thecc1EG042436t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY18277.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT5G37620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MELQHFSHKHPLLFNEERSHESEKQAYCSGCGELVSGPTFSCAE CGFYLDKNCAEAPSEVNHCFHRDHSLQLLNVAERRFGELEDIGYKDPLISSENGYQEL KEAECFACWKPLLDSAYLSLDFGFFIHKKCVDLPIEISHLFHCQHPLILQFNSKRLPC QICQRTQPRGFVYCCSPCQFALHIACAELPIKINHLCHRIHPLILQFNPESLPCQICQ ETQGQGFVYCCSICKFALHVKCVSPPPSIKGEIHEHPFTLFWRQVSFICDACGTIGDY VSYICSTCSFIVHKKCISLPHIIKLPRHHHPISHTFILGKLDIETWECKICPGEVNAQ HGGYCCFDCNYIVHANCAKEDSSWYQFYEIDGTDEQLNEPSVFSVVKESKVGENVIPT EIKHLSHQHNLILGNADKDDDKFCVGCMLSISSSFYYCSQCDFFLHKSCAESPRKKHL WFHIHQRPCTLLISDLFFYCSTCSYEFNIGFAYECNVCEQYFCLRCALTSDTATCRGH EHLLTFYGKYEGQCSGCGGSLSMGYACKGCKFVVDYTCLRLPNKIRHKCDEHPLILTY HEDNIYSEYHYCDICEKKRNPNYWFYHCVICDNSIHPKCVIGRYSFMKLGHTYIKSYH PHPLTFTKKVYDYPECHQCDRPCLDLALECLDNECNYIVHWKC" gene complement(2679968..2696241) /locus_tag="TCM_042872" /note="dbxref CacaoGD:Thecc1EG042872" mRNA complement(join(2679968..2680236,2684572..2687171, 2694459..2694986,2696042..2696241)) /locus_tag="TCM_042872" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042882t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc2285t1" CDS complement(2685041..2687077) /locus_tag="TCM_042872" /note="paralog of Thecc1EG042882t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY18278.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT5G22355.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MEIQHFSHNHPLVFEEERSHDSDEKAYCNVCGEVVSGPTYSCVA CGFHLDKKCAEAPLELNHPFHREHSLKLTIWTAGKYWFNCNFCNKRCDNFVYLCSITC KVRLHIKCALFTYSIVKKNIGGLQHIAHKDPLISTENPSVKLKYAHCFVCWTPLLDSP CFSLDCGFYLHKKCVELPFEINHLCHHQHSMLLQFNSDSLPCKICQETQVKGFVYCCS MCKVALHIECVPPSPFIEDCSHEHSFTRCLRRFSFICGACGMSGNYASYICSTCALPA HKNCISLQRIIKSMWHHHPIFHHYFVVENECGILECGICHEEVSKEYGSYYCAECKFI VHVKCVLEDTDCYYGIESKDVYEKLNENPTLVDPSFLVIKEIKLGENVIHTEIKHFSH EHNLVLYDEARDDKCCDCCSLLIETSFYHCSECDFCLHKSCAALPRKKPLWPFPEISL MLTPNCFFICELCGSNHTGFANRASDESSSKYICLQCGEFPWSCTSQGHKEHLLSLYP KYNGQCNACGDSIDDVSAYRCKGCNFNLHSKCTRLPQTARHKCDEHRLTLTYNEDNDY LEYHYCDICEERRNPNIWFYHCTICDKSVHLKCVLGDYPFIKFGPFIKFGRRIFTETN HPHSLTFVKKVFLYPECCKCGQPCSDLALECAECNYIIHWSCSKIDSDFIELAQ" gene complement(2686797..2759580) /locus_tag="TCM_042873" /note="dbxref CacaoGD:Thecc1EG042873" mRNA complement(join(2686797..2687057,2747515..2747773, 2747929..2749324,2753414..2753962,2759450..2759580)) /locus_tag="TCM_042873" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G29624.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042872t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04640.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" mobile_element complement(2691020..2693826) /note="source:scaffold_6_CACTA_0710 412 3203" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2693828..2694799) /note="source:CACAO_M_S_E99646_F215_scaffold_9 431 1438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2695492..2695722) /note="source:scaffold_6_CACTA_0710 188 418" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2696050..2696237) /note="source:scaffold_6_CACTA_0710 15828 16003" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2696323..2696596) /note="source:scaffold_5_CACTA_0614 6138 6409" /mobile_element_type="transposon:TIR/CACTA" gene 2696336..2709455 /locus_tag="TCM_042874" /note="dbxref CacaoGD:Thecc1EG042874" mRNA join(2696336..2696451,2696734..2697231,2709321..2709455) /locus_tag="TCM_042874" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025907t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage" CDS join(2696352..2696451,2696734..2696942) /locus_tag="TCM_042874" /note="paralog of Thecc1EG025907t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18280.1" /translation="MMKKREKGTTGRVRTHPARHLSHLPDAKNSRLAEGVKFGVVCRR LGGATAWRFAAGRRSEIWGGLPPVGGVKSGAFAAGRRSEIWVGLPPVGGATAWKFAAG " mobile_element 2696566..2696676 /note="source:CACAO_M_E69938_F9_scaffold_9 3842 3950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2696597..2696630 /note="source:CACAO_M_E44210_F112_scaffold_5 10040 10313" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2707679..2708460 /note="source:INTACT579_F10_scaffold_3-int 4976 5751" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(2709457..2715691) /locus_tag="TCM_042875" /note="dbxref CacaoGD:Thecc1EG042875" mRNA complement(join(2709457..2710740,2710911..2711038, 2715302..2715691)) /locus_tag="TCM_042875" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042872t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1478t1" CDS complement(join(2709683..2710740,2710911..2711031)) /locus_tag="TCM_042875" /note="paralog of Thecc1EG042872t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY18281.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT2G19660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MKPKSRDLFTVVHCARLPFTLNVCHHHLLLKIVVMNTDSLGENE YGLLECGICHEDVNKELGSYYCFECEYIVHVKCVLDPGLYYGIESKDDYEKLNGNPAL MDSSFLVIKRIKLGENVISSEIKHFTHEHILVLYDEAKDDKCCDFCSLLIETSFYHCS ECDFCLYKSCAKLPRIKQFWLLPQFSLNPTCFFICQLCLKTHTSFAYKAVKNFWSVYI CVQCAEFSLARPCQGHEEHLLFLYHKDNGQCNACGDSMCDQSAYTCKDCNFNVHPKCT LLPQTVRHKCDEHRLTLIYHEDNDYSEYHYCDICEEIRNPNIWFYHCTICDNSAHLKC VLGEYSFIKLRSKITTEIAEIGHPQSLVLVQKVPHNLVGSLWMWESWQCSISCILLIH " mobile_element 2713249..2713374 /note="source:scaffold_6_CACTA_0702 12149 12282" /mobile_element_type="transposon:TIR/CACTA" gene complement(2715135..2718743) /locus_tag="TCM_042876" /note="dbxref CacaoGD:Thecc1EG042876" mRNA complement(join(2715135..2715594,2716863..2717740, 2718073..2718172,2718451..2718743)) /locus_tag="TCM_042876" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene34192" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042882t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04760.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8668t2" CDS complement(join(2715399..2715594,2716863..2717740, 2718073..2718172,2718451..2718719)) /locus_tag="TCM_042876" /note="paralog of Thecc1EG042882t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY18282.1" /db_xref="Phytozome:POPTR_0016s04760.1" /db_xref="TAIR:AT3G27473.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MEFQHPSHNHPLVFEEERSHESDEKAYCYVCGEVVSGPTYSCVA CGFHLDKNCAEAPLQMNHPFHRNHSLTLGSETPVKFWFNCDFCNKSLIVIVSLARYAK KPKPGDLFTVVQCARLPFTSICVLKGKLFYHEIASKDAFEKLIENPTLVDPTFLVIKE IKLGENVINREIKHFSHEHNLVLYDEVRDDKCCDCCSLLIETSFYHCSKCDFYLHKSC AELPMKSRGYFAHLSLNLIPNHFFKCRGCKSLHTGFAYNWKGFCLCVQCAEFSLSYAS QAHKEHLLLYYKKYNGQCNACGNSIDNAAAYRCKSCNFNVHWACTLLPQTARHKCDDH SLKLTYYEVNDYSEYHSCDICEERKIPNIWFYHCALCDKSAHPKCVLGDYPFIKLGRR ISAKTDHPHSLILVQKVYLYPDGTECSKCGQLCLDLALECTDTRCSFIIHWRCSSLKD FIEDHNIVELIAKDFIEDHNIVELIAIKCY" mobile_element 2715594..2716232 /note="source:scaffold_2_CACTA_0244 13472 14116" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2716532..2716879 /note="source:scaffold_2_CACTA_0244 14346 14711" /mobile_element_type="transposon:TIR/CACTA" gene 2718176..2747059 /locus_tag="TCM_042877" /note="dbxref CacaoGD:Thecc1EG042877" mRNA join(2718176..2718737,2724356..2725027,2725118..2725881, 2726264..2726535,2727444..2727585,2730745..2731493, 2733200..2733338,2746851..2747059) /locus_tag="TCM_042877" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" CDS join(2718660..2718737,2724356..2725027,2725118..2725881, 2726264..2726535,2727444..2727585,2730745..2730982) /locus_tag="TCM_042877" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18283.1" /translation="MAPLFLENQRMIVARMLKFHLFFCIYDSMGETRRQERENYGNHR YDNSGKRWIDSLHSVFANNLSKRLSWNAIRGAFEEHGRVVDVHLPKRILQDRNRDTNF AFIWYRDKSEMERALKWGGHQWIDGRRVGVRRAEPWRANSNKEIKGSMVKGSLAQGAN QKKFDGRSYRDVVIEGRVNDQDPKGATTKQMMEARQICKESPGAKKETEQGTKLENKE TGQQQMLSHRSKSGVINTNIPDEDMEWTRRSAGLSTLVTFEDYEEMVVILENYWDFFD QWFESLIPLDIASSDKEVRLWIKLEEIPIKLWHLNTFKAIAQCWGDFIGVDRATFRRE RLDPALILVNVKSRTIIPPRAMLEAEGKIHIISVNIVGGERCDNLEIYTTGKEIVTEE EETIVKDGLNGGPPNTVEEPPCTLNPAVNTDSQKGCTGCSELSEIFELKGSVKGGFGD RSGETKIRSQIYRTEDRGRNVQEKREQLDKKTKVVVQSMGNSANNVSKKRGTGGIKIG LQKQVSTDRVEEDSDKQIKKVLHELNEAEQRTSHKNKEQLGTGMKNVKGRLSKAVTSS IGENNSKGEAPTVIESSDEERWMKVTLRRRRSHNVYDIDSFRKFIEDLGLIDMPMIGG EFTYRNFKEEEEAFGRLDRGNPSQAAIGGVLKDDKGVVKILFSISIGIFEANTAEMMA IKEAFKLFGASKWVESHSLIVESDSKNAVSWVHKPDKAL" mobile_element complement(2737496..2741282) /note="source:CACAO_M_E85265_F10_scaffold_10 1 3787" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(2741501..2742079) /locus_tag="TCM_042880" /note="dbxref CacaoGD:Thecc1EG042880" mRNA complement(2741501..2742079) /locus_tag="TCM_042880" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042873t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(2741753..2742031) /locus_tag="TCM_042880" /note="paralog of Thecc1EG042873t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18284.1" /translation="MEIQHFSHNHPLVYNEEPSHESNKKAHCYGCGEVVSGTSFSCAD CGFYLDKKCAETPSEMKHPFHRNHSLKLLASKPYGEGMSICDFCSKKL" CDS complement(join(2747734..2747773,2747929..2749229)) /locus_tag="TCM_042873" /note="paralog of Thecc1EG042872t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY18279.1" /db_xref="Phytozome:POPTR_0016s04640.1" /db_xref="TAIR:AT3G28650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MEIQHPSHNHPLAFSEERSHESDEKAYCYACGEVVSGPAYSCAA CGFHLDKNCAEAPSQMNHPFHRNHILDRLSSWPYGKLWFNCDFCNKRCDNFGYSCSAC DLRLHIKCALFSYNIVEKNIGELQHTENHSAKLKYAQCFVCWTPLLNSVYFSLDRGFF LHKKCVELPFEINHLCHRQHSLFLQFNSDGLPCKICQETQRRGFVYCCSMCNVALHIE CVSPLPIIEDTSHEHSFTKCLRRLSFICDACGTSGNYAPYICSTCSLTIHKDCAALPR IIKSVWHHHPISHYYFAVENECGILECGICHEEVNKEYGSYYCSECKFIVHVKCVQED TGFYYEIESIDDYEKLNENPTVVDPTFRVINEIELGENVINTEIKHFSHEHNLVLYDE VKDEKCCDCCSVLIETSFYRCSECDFYLHKSCAELPKKKQFWTQGAPSPLLPQV" mobile_element 2751725..2752213 /note="source:CACAO_PIF_E119_scaffold_3 1766 2271" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2753503..2753841) /note="source:scaffold_5_CACTA_0610 6327 6671" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2753992..2758201) /note="source:scaffold_6_CACTA_0710 138 4289" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2758531..2758866) /note="source:scaffold_5_CACTA_0610 6327 6670" /mobile_element_type="transposon:TIR/CACTA" gene complement(2759378..2775148) /locus_tag="TCM_042881" /note="dbxref CacaoGD:Thecc1EG042881" mRNA complement(join(2759378..2759419,2773119..2773330, 2774520..2774595,2774895..2775148)) /locus_tag="TCM_042881" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" gene complement(2759928..2775141) /locus_tag="TCM_042882" /note="dbxref CacaoGD:Thecc1EG042882" mRNA complement(join(2759928..2760710,2760829..2760921, 2763527..2763595,2763693..2763755,2763917..2764186, 2764708..2765020,2769161..2771258,2774799..2775141)) /locus_tag="TCM_042882" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042872t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(join(2760647..2760710,2760829..2760921, 2763527..2763595,2763693..2763755,2763917..2764186, 2764708..2765020,2769161..2771168)) /locus_tag="TCM_042882" /note="paralog of Thecc1EG042872t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY18286.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT5G59930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MEIQHPSHNHPLVFKEERSHESDEKAYCHGCGEVVSGPKYSCVA CGFHLDKNCAEAPSGLNHPFHRNHSLDHLATHGKRWFNCDFCNKRCDNFVYRCSPCTL NLHIKCALFSYNIAEKNIGELQHIAHNDPLISTENHSVKLKYAHCFVCWTPLLDSSYF SLDYGFCLHKKCVELAFEINHPCHYQHALFLQFNCDCLPCEICQETQVRGFVYCCSMC KVALHIDCVSPSPIIEVSSHEHSFTRCLRQFSFICCACGTPGNYTPYFCPTCSLTVHK SCISLPCIIKSIWHHHLVFHDYFLVENECGILECGICHEEVNKEYGSYYCSECKFIVH VKCVLKDKMLYYEIASKDAFEKLIENPTFLVIKEIKLGENVINREIKHFSHEHNLVLY DEVRDDKYCDCCSLLIETSFYHCSKCDFYLHKSCAELPMKSRGFFAPLPLNLIPNHFF KCILCGSLRTGFAYKCEGSCLCVQCAELPLSYTSQAHKKHLLFFYMKYNGQCNACGTS IIGGSTYRCKGCNFNLHALCALAPLTARHKCDEHSLKLTYHEVNDYSESHSCDICEKR RNPNIWFYHCALCDKSAHPKCVLGDYSFIKLGRRISAKTDHPHSLILVQKVYLYPECS KCGQLCLDLALECTDTRCSFIIHWRCSRLKDFIEDHNIVELIAAKSISPSNSHRKKGE MEFQHPSHIHPLVFNEEPSHESNEKALQCNGCGEAVSGPAYSCVACKFLLDKICAEAP LEMNHPFHCTPSLKLVASPPYIGYWCNCYFCEKSLIIHKYCVSLPRIIKYIWHHHPIF HNNFEGENEYGILECGICHEDVNKEFGSYYCFECEFIVHVKFVLDPGLYYRIESKDDP EKLNGNPAFENPIARHREKLRVVTNLFLRIEFRNTITSGEGLAPSRYPFYKCHIGAPS IGGLLLDEKISHLARQLPCSHPAELLLWLLWACLPIHISLGHATL" mobile_element complement(2766754..2766938) /note="source:CACAO_on_E732_scaffold_9 5369 5551" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2767024..2767148 /note="source:scaffold_6_CACTA_0702 12149 12282" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(2773241..2773330,2774520..2774595, 2774895..2775103)) /locus_tag="TCM_042881" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18285.1" /translation="MQEMKPIDTMWLGISITYINSCLCNTAGESRNHKIFLLHLSKEI WAGACRFFFKSHMQKVVGDSSHEFQCLFLSVAILLACFGGYKLKRNQHPTQGEGEAGA WDMVGMIAVIFFSFLRLLEVGE" gene complement(2783636..2786750) /locus_tag="TCM_042886" /note="dbxref CacaoGD:Thecc1EG042886" mRNA complement(join(2783636..2785905,2786513..2786750)) /locus_tag="TCM_042886" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene34227" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042882t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1146t1" CDS complement(2783743..2785815) /locus_tag="TCM_042886" /note="paralog of Thecc1EG042882t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY18287.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT5G22355.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MEIQHFSHIHPLVLNEKPSHEGAEKALHCNGCGEVVSGRTYSCV ACWFHLDKICAEAPSEMNHPFHRNHSLKLLASPPFFGSGWCICYFCRKRCEKFIYHCA CDLNLHIKCALFSYNIAKKDIGELQHIAHKDPLISTKNHSEELKEAKCFVCWMPLLDS VYFPLDCGFFLHKKCVELPFEIIHLCHRQHSLFLQFSCYPLPCKICQESQVRGFVYCC STCKVALHSECVSPSPIIVDSRHQHSFTRYSRQFSFICDACGMSGNYGPYICSTCNLT VHKNCISLPRIIKIIFHHHPVFHNYFIVENDCGILECGVCHEEVKKEYGSYYCSECKF IVHVKCFIDYPRSYYEIESKDVNEKPNENSTMVTDTMDPSFLVIKEIKLGENVINKEI KHFSHEHNLVLYDEVKDEKWCDGCSLLIETSFYHCSECDFCLHKSCAELPKKKQFWFL PLFHSLNLIPNCFFFCGGCEFIHTGFAYKGETDFQHVSVCSQCAEFSLACTSQAHKEH PLHLYLKYNGQCNACGDSINEDKVAYRCKGCNFNVHCTCTMLPQTVQHKCDEHHLTLT YHEDNDYSEYHYCDICEELRNPNIWFYFCAICDKSAHINCVVGDYPFIKLGRKISIEA DHPHSLVLVQKVYLYPECSKCGQPCSDLALQCADTRCNFIIHVKCSRLEDFIEDDNIV ELIATSGY" mobile_element complement(2786760..2787347) /note="source:scaffold_1_CACTA_0009 13257 13830" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2787045..2791010 /note="source:CACAO_M_E33977_F20_scaffold_4 5392 9331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2790762..2791057 /note="source:CACAO_Mutator_E1410_scaffold_6 5707 6003" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2791110..2791237 /note="source:CACAO_on_E193_scaffold_6 3416 3548" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2791123..2791246) /note="source:scaffold_1_CACTA_0009 9414 9538" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2791239..2791276) /note="source:scaffold_1_CACTA_0009 8963 9002" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2791246..2791293) /note="source:CACAO_Mutator_E161_scaffold_1 4050 4099" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2791293..2791356) /note="source:CACAO_Mutator_E161_scaffold_1 5878 5947" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2791350..2791470 /note="source:CACAO_Mutator_E1410_scaffold_6 426 546" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2791997..2792416 /note="source:scaffold_9_CACTA_0922 1483 1901" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2792433..2794468) /note="source:CACAO_Mutator_E1888_scaffold_9 2138 4903" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2794175..2795636 /note="source:scaffold_9_CACTA_0922 3823 5327" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2795086..2797321) /note="source:CACAO_Mutator_E1410_scaffold_6 1 2239" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2797041..2798848 /note="source:CACAO_M_E33977_F20_scaffold_4 14867 16544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2803797..2804689 /note="source:CACAO_M_E57346_F74_scaffold_9 3151 4069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2803951..2804691) /note="source:INTACT674_F296_scaffold_6-int 4639 5429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2806765..2806910) /note="source:CACAO_M_E3705_F189_scaffold_1 900 1062" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2806833..2807028 /note="source:scaffold_8_CACTA_0860 234 427" /mobile_element_type="transposon:TIR/CACTA" gene complement(2808722..2813256) /locus_tag="TCM_042888" /note="dbxref CacaoGD:Thecc1EG042888" mRNA complement(join(2808722..2809362,2813223..2813256)) /locus_tag="TCM_042888" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042441t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" CDS complement(2808914..2809336) /locus_tag="TCM_042888" /note="paralog of Thecc1EG042441t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18288.1" /translation="MFYVLCYHEQLGTNVMNIVSHSHTMKFMIIQNIIFVTFVKKEET PTFGFIIVHFVTSQLIPNVFLEITRLSSSGGGSLQRLIIHTYSFSGKRFIFTLNVLNV VSSASIWLLSVQTQDAALLSIGDVAASKTSLKMIISLS" mobile_element complement(2809480..2810305) /note="source:CACAO_M_E49539_F76_scaffold_7 4172 4997" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2809484..2822847 /locus_tag="TCM_042889" /note="dbxref CacaoGD:Thecc1EG042889" mRNA join(2809484..2809775,2812145..2812659,2813867..2814477, 2814604..2814722,2815094..2815369,2816648..2817279, 2818144..2818880,2822704..2822847) /locus_tag="TCM_042889" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400062889" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045360t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" mobile_element complement(2811310..2811624) /note="source:CACAO_M_E58877_F5_scaffold_9 17590 17895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2811875..2812671) /note="source:CACAO_M_E58877_F5_scaffold_9 16554 17339" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(2812195..2812659,2813867..2814477,2814604..2814722, 2815094..2815369,2816648..2817279,2818144..2818605) /locus_tag="TCM_042889" /note="paralog of Thecc1EG045360t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18289.1" /translation="MASSSAGPLNIYRNDYEIELQMRQIQQEKRDCLTQGHISILPER VHLDLQQNDFTEMVGIWEQWRRAHRDNFQNKYGHIAWLLYVPVDDQMLRAIVQFWDPS YRCFVFNKVDMTPTIEEYFSLLLIDHMQPDKIYWRAQKTGHRRKLAKLLGMTTGAISY APIMVRRQFGSEQFVPMTHQLDQLEFTYGEPETLKRIEEIVQDWKKTCRVDQGRVTDE VTTGYHTWHDQRVKNVIHPPKNPSKHPVNPEPQDVLLENELTRKRLEKEMMNMKRRHE DELEEVKKETARKVLVALKERDEWQSKFEEVSVANSSLLARIQELQSANNALQHEVRR QGQTIQELKNDCDMLKTAMEGYKAQARVMANKTEELRREILPKDELSERLINHLKMVR DQYDKVDKGKKAAGSSGTPEDVQQTETNTDPVYPPGFTPPPARNASIPMPSVGQYPFF GMPIGPPPTYAQQRPIGGASPSDPISVPDLDDPKEQEKLKWVNAIEREVYVKRNIREV ETSMEKVFEALVKADMLEVWPECPNVKDSRDIQRLCCLYHKGCVGHSIQDCSSFRKEV QRMMDESKIEFYTEASESAVNMISKESTHPMKIKPLTIFYESKGEFVEDKNRAKMIIE VPKPFPYKDNKAVPWNYNCNVQVSEAKKWIAESQDDAANITGGGGITRSGRCYSPEAF ENLKNEKGKEKEQSPREEKILGKGYRAGAGLGKELQGIRSPIRTTKNEERFGLGYKTT KKEREEMIAERRKERLARFKGHELEIQGMTYPHLYKTFRSGGCIFPESLTVGNQESVS ALGGTFSDLSICATAEGEEQPGNVDEIPTTYLGPPNLKLSNWTTMSLPVTCDSISK" mobile_element complement(2813375..2813486) /note="source:CACAO_M_E12044_F76_scaffold_2 5607 5706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2813812..2815754) /note="source:INTACT1427F_F390_scaffold_9-int 10878 12829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2818989..2820121 /note="source:CACAO_M_E3935_F390_scaffold_1 9686 10818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2820437..2820856) /note="source:INTACT58_F125_scaffold_5-int 5935 6357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2821290..2821924) /note="source:CACAO_M_E58877_F5_scaffold_9 10028 10661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2822025..2823719) /note="source:CACAO_M_E58877_F5_scaffold_9 7015 9961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2823694..2823786 /note="source:CACAO_M_E44210_F112_scaffold_5 11402 12772" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2823787..2825572 /note="source:CACAO_M_E69938_F9_scaffold_9 4635 6354" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2826183..2827916) /locus_tag="TCM_042890" /note="dbxref CacaoGD:Thecc1EG042890" mRNA complement(join(2826183..2827026,2827269..2827338, 2827424..2827492,2827564..2827660,2827775..2827916)) /locus_tag="TCM_042890" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.96 coverage" CDS complement(join(2826918..2827026,2827269..2827338, 2827424..2827492,2827564..2827660,2827775..2827786)) /locus_tag="TCM_042890" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18290.1" /translation="MGFKLRCSSPLVVLLLPYDILFLAGCLGRDCLGSLKGGRGVRGG GEIFFSLGFSRLLLSGSWFLSGVLLAKAFGPLELALKSKFFSLGGRGGGCMHGAWLDV IAVIFFCFLRLVEVGE" gene 2829887..2833147 /locus_tag="TCM_042891" /note="dbxref CacaoGD:Thecc1EG042891" mRNA join(2829887..2830822,2830971..2831132,2831358..2832122, 2833024..2833147) /locus_tag="TCM_042891" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042868t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05060.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1716t1" CDS join(2830022..2830822,2830971..2831132,2831358..2831702) /locus_tag="TCM_042891" /note="paralog of Thecc1EG042868t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY18291.1" /db_xref="Phytozome:POPTR_0008s05060.1" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM50" /translation="MEVNAGDFISSLPDEILFHIISLLPFESAIQTIFLSTRWRLLWN LALVQHGSKEDVPTAVSGFLTNFDEHNPTRNTRRLRFHFGEDGVLSAIIAPNHKLHLD FSADNQEHPRQFGWQIELNPQNLSLQPTPSTFFVKTLCLISVNHLSSEAVSSMVSRFQ LLENLKIIGCSGLESLSIDSDTKLLNLTIFDCPQLKSLHIRSYKLRNFWYRGQFPWFW PEFHFNLANAMLDSRQGPGYSTFRTIDFDRVLLTIKNSEIFTLCKWTFEALVCPSLSS FRAAFQFYRLKELWWIDNYSKGLYNSDALITFLELCPSLERLFVTIDHGSYVMPSTAT CSKQVGKYTKLQHLKVVKLEGFANHEDEILFTERLQDVVAAKPVILTTLDGICFWNLT KVPSHEPQQPEETSLLSQEKYFYKFVPVKNINELCPTHAHMSL" gene complement(2833795..2835923) /locus_tag="TCM_042892" /note="dbxref CacaoGD:Thecc1EG042892" mRNA complement(join(2833795..2834475,2835030..2835280, 2835677..2835923)) /locus_tag="TCM_042892" /product="Tonoplast intrinsic protein 1,3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016615001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041906t1" /inference="similar to AA sequence:frave:gene26700" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12966t00001" CDS complement(join(2834101..2834475,2835030..2835280, 2835677..2835809)) /locus_tag="TCM_042892" /note="dbxref frave:gene26700; paralog of Thecc1EG041906t1" /codon_start=1 /product="Tonoplast intrinsic protein 1,3" /protein_id="EOY18292.1" /db_xref="TAIR:AT4G01470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8FSK8" /translation="MPINRIAIGTPGEASQPDALKAAFAEFFSMLIFVFAGEGSGMAF NKLTNNGSSTPAGLVAASLAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGNITLLR GILYWIAQLLGSVVACLLLKFATGGLETSAFSLSSDVSAWNALVFEIVMTFGLVYTVY ATAVDPKKGNLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWV YWLGPLIGAAIAAVVYDNIFIGDATHEPLSTSDF" gene complement(2835978..2836622) /locus_tag="TCM_042893" /note="dbxref CacaoGD:Thecc1EG042893" mRNA complement(2835978..2836622) /locus_tag="TCM_042893" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(2836101..2836370) /locus_tag="TCM_042893" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18293.1" /translation="MVKWLDLNGLIYNHTKSAAKPISMGPTKRTSRITRLILNIQMVG FQPPISLASTGLPMDHKPHNHHPGPTASFGRRSRSLPGRIVRIYN" gene complement(2837732..2841850) /locus_tag="TCM_042894" /note="dbxref CacaoGD:Thecc1EG042894" mRNA complement(join(2837732..2840888,2841169..2841850)) /locus_tag="TCM_042894" /product="Receptor-like protein kinase THESEUS 1" /inference="alignment:exonerate-protein:2:frave:gene26704" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031346t1" /inference="similar to AA sequence:frave:gene26704" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS complement(join(2838455..2840888,2841169..2841365)) /locus_tag="TCM_042894" /note="dbxref frave:gene26704; paralog of Thecc1EG031346t1" /codon_start=1 /product="Receptor-like protein kinase THESEUS 1" /protein_id="EOY18294.1" /db_xref="TAIR:AT5G54380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I0N1" /translation="MPQNIKRRKQNLIKLQLSQFPHTSQTFFSFKYLMQSVKSSHSHR PSLGNSVITTITLIPQAPNSSLPIDVFLIDCGGSNPVELDDSRVFHPDSSTPNVGLSP SSDVVSGNEMSISGNSALYNSARVFEKSSAYTIRTKQIGHHWLRLHFFPLQDTKYNLK SAVFSVVSNGITLLHQFSYWKSGQNSPLVKEYVIEVGGSSSKKLELTFSPCNGSIAFI NGIEVVAVPNLYFPSRVVPVPLGPEVEIPKHAALETAYRINMGGPLLTPKNDSMWRIW EPDQPYLVNAASALDVMVNPNLIKYPDGIPAEIAPNWVYATAQEMAEANVTDQRFNIS WTFEVEEGFTYLIRMHFCDIVSIALNSLVFNVYINKQSALSSFDISSKTMALSAAYYV DFLTNVSMGSNQILVQIGPPDLRNLPSNAILNGLEIMKMSNTCDSLDGNVCVSSGNSK FPRKILIVLAISSAAVFAVLMVMVATFFLYLRQPKRPKRCPSTWFPFLANVGNSDSKV SICSLASTAQTHGLGRVLSFSEIREATKNFDESLVIGVGGFGKVYKGMLENGVMVAVK RGNPGSRQGLTEFRTEILMLSKLRHRHLVSLIGYCEEQNEMILVYEFMAGGPLRKHLY GSNHPPLSWKQRLEICIGAAKGLHYLHTGAADSIIHRDVKTTNILLDENFTAKVADFG LSKLGPTLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEILCARPAIN PALPREQVNIAEWAMHWQKRGLLERIIDPHLAGFINLDSLRKFGETAEKCLAEHGTDR PTMGDVLWNLEYALQLQEASIQNDSSDNSANHIPEIPGWIPLVELISANRFDSISDQA SDATTTTSDVFSQLMDPKGR" gene complement(2842149..2853510) /locus_tag="TCM_042896" /note="dbxref CacaoGD:Thecc1EG042896" mRNA complement(join(2842149..2842648,2842750..2842846, 2842955..2842984,2843490..2843563,2843679..2844556, 2844795..2846258,2846493..2846734,2846825..2847612, 2847771..2848111,2848212..2848432,2848552..2848862, 2848939..2849198,2850156..2850356,2850478..2850653, 2850755..2850809,2852556..2853036)) /locus_tag="TCM_042896" /product="P-glycoprotein 20 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G55320.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21720.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8028t10; alternateUTRof:Thecc1EG042896t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1896t1" gene 2842527..2844346 /locus_tag="TCM_042895" /note="dbxref CacaoGD:Thecc1EG042895" mRNA join(2842527..2842648,2842750..2842846,2842955..2843038, 2843130..2843203,2843293..2843415,2843492..2843563, 2843679..2843775,2843975..2844346) /locus_tag="TCM_042895" /product="PsbP-like protein 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21710.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21710.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02754t00001" CDS join(2842595..2842648,2842750..2842846,2842955..2843038, 2843130..2843203,2843293..2843415,2843492..2843563, 2843679..2843775,2843975..2844078) /locus_tag="TCM_042895" /codon_start=1 /product="PsbP-like protein 2" /protein_id="EOY18302.1" /db_xref="Phytozome:POPTR_0010s21710.1" /db_xref="TAIR:AT2G39470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80634" /translation="MAMSSVSLNWVPATLTNKSNAPHSNELARATALSLHNSVACPKE TTSNEENNCKRRLLLLGVGAVTVSLLPATSLLAEEIPQNYQAFVDILDGYSYYYPSDW REFDFRGHDSAFKDKFLQLQNVRVRFIPTDKKDIHDLGPIEEVVYNLVNHVYAAPNQM VNILDMQERTTDGKNYYTFEYALASPNYASASFATIAIGNGRYYTLVVGALERRWRRV RNKLKVVADSFKVLDI" mRNA complement(join(2842881..2843038,2843130..2843207, 2843297..2843418,2843495..2843563,2843679..2843776, 2843976..2844556,2844795..2846258,2846493..2846734, 2846825..2847612,2847771..2848111,2848212..2848432, 2848552..2848862,2848939..2849198,2850156..2850356, 2850478..2850653,2850755..2850809,2852556..2853180)) /locus_tag="TCM_042896" /product="P-glycoprotein 20 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G55320.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21720.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc635t5; alternateUTRof:Thecc1EG042896t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1896t1" mRNA complement(join(2842881..2843038,2843130..2843207, 2843297..2843418,2843495..2843563,2843679..2844556, 2844795..2846258,2846493..2846734,2846825..2847612, 2847771..2848111,2848212..2848432,2848552..2848862, 2848939..2849198,2850156..2850356,2850478..2850653, 2850755..2850809,2852556..2853180)) /locus_tag="TCM_042896" /product="P-glycoprotein 20 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G55320.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21720.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc635t7; alternateUTRof:Thecc1EG042896t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1896t1" mRNA complement(join(2842981..2843036,2843128..2843207, 2843297..2843413,2843490..2843561,2843677..2844556, 2844795..2846258,2846493..2846734,2846825..2847612, 2847771..2848111,2848212..2848432,2848552..2848862, 2848939..2849198,2850156..2850356,2850478..2850653, 2850755..2850809,2852556..2853033)) /locus_tag="TCM_042896" /product="P-glycoprotein 20 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G55320.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21720.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc612t3; alternateUTRof:Thecc1EG042896t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1896t1" mRNA complement(join(2842981..2843036,2843128..2843207, 2843297..2843413,2843490..2843561,2843677..2843774, 2843974..2846258,2846493..2846734,2846825..2847612, 2847771..2848111,2848212..2848432,2848552..2848862, 2848939..2849198,2850156..2850356,2850478..2850653, 2850755..2850809,2852556..2853033)) /locus_tag="TCM_042896" /product="P-glycoprotein 20 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G55320.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21720.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc612t7; alternateUTRof:Thecc1EG042896t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1896t1" mRNA complement(join(2842981..2843036,2843128..2843207, 2843297..2843413,2843490..2843561,2843677..2846258, 2846493..2846734,2846825..2847612,2847771..2848111, 2848212..2848432,2848552..2848862,2848939..2849198, 2850156..2850356,2850478..2850653,2850755..2850809, 2852556..2853033)) /locus_tag="TCM_042896" /product="P-glycoprotein 20 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G55320.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21720.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc612t12; alternateUTRof:Thecc1EG042896t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1896t1" mRNA complement(join(2844235..2844556,2844795..2846258, 2846493..2846734,2846825..2847612,2847771..2848111, 2848212..2848432,2848552..2848862,2848939..2849198, 2850156..2850356,2850478..2850653,2850755..2850809, 2852556..2853510)) /locus_tag="TCM_042896" /product="P-glycoprotein 20 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G55320.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21720.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1896t1" CDS complement(join(2845029..2846258,2846493..2846734, 2846825..2847612,2847771..2848111,2848212..2848432, 2848552..2848862,2848939..2849198,2850156..2850356, 2850478..2850653,2850755..2850809,2852556..2852960)) /locus_tag="TCM_042896" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="P-glycoprotein 20 isoform 1" /protein_id="EOY18295.1" /db_xref="Phytozome:POPTR_0010s21720.1" /db_xref="TAIR:AT3G55320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3B9" /translation="MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDTTAEAAAA AAAAQVEAEEEMEEAEEIEPPPAAVPFSRLFACADRLDWALMIVGSLAAAAHGTALVV YLHYFAKIVHVLGIGPPEQGQGGMEVPFERFKELASTIVYIAVGVFAAGWIEVSCWIL TGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH NMATFFSGLIIGFVNCWEIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASI AEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCA LQLWVGRFLVTNDKADGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMI SRSSSGSNQEGNNLPSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN GSGKSSIIPLMERFYDPTLGEVLLDAENIKNLKLEWLRSQIGLVTQEPALLSLSIKDN IAYGRHATFDQIEEAAKIAHAHTFISSLERGYETQVGRAGLALTEEQKIKLSIARAVL LNPTILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEG QLVEMGTHDELLALDGLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSSVHSFQ ESSSPKLIKSPSLQRVPGVFRPQDGAFNSQESPKAHSPPPEKMLENGLAADAGDKEPS IRRQDSFEMRLPELPKLDVLSTQRQKSNGSDPESPVSPLLTSDPKNERSHSQTFSRPH SHSDDIPVKVKEAKDAHHREAPSFWRLAQLSFAEWLYAVLGSIGAAIFGSFNPLLAYV IALIVTAYYRPGGRNHLRDEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVR RMMFSAMLRNEVGWFDEEENTADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAI LIGMLLHWRLALVAFATLPVLTVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIY TVVAFCAGTKVMELYCLQLKKILKQSFFHGMAIGFAFGFSQFLLFACNALLLWYTALS VKKGYMDLPTAVKEYMVFSFATFALVEPFGLAPYILKRRKSLTSVFEIIDRVPKIEPD DNSALKPPNVYGSIELKNVDFCYPTRPEMLVLSNFSLKVNGGQTVAVVGVSGSGKSTI ISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN AREAEIKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPIL LLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEE GTHDSLVAKNGLYVRLMQPHFGKGLRQHRLV" CDS complement(join(2845029..2846258,2846493..2846734, 2846825..2847612,2847771..2848111,2848212..2848432, 2848552..2848862,2848939..2849198,2850156..2850356, 2850478..2850653,2850755..2850809,2852556..2852960)) /locus_tag="TCM_042896" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="P-glycoprotein 20 isoform 1" /protein_id="EOY18296.1" /db_xref="Phytozome:POPTR_0010s21720.1" /db_xref="TAIR:AT3G55320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3B9" /translation="MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDTTAEAAAA AAAAQVEAEEEMEEAEEIEPPPAAVPFSRLFACADRLDWALMIVGSLAAAAHGTALVV YLHYFAKIVHVLGIGPPEQGQGGMEVPFERFKELASTIVYIAVGVFAAGWIEVSCWIL TGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH NMATFFSGLIIGFVNCWEIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASI AEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCA LQLWVGRFLVTNDKADGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMI SRSSSGSNQEGNNLPSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN GSGKSSIIPLMERFYDPTLGEVLLDAENIKNLKLEWLRSQIGLVTQEPALLSLSIKDN IAYGRHATFDQIEEAAKIAHAHTFISSLERGYETQVGRAGLALTEEQKIKLSIARAVL LNPTILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEG QLVEMGTHDELLALDGLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSSVHSFQ ESSSPKLIKSPSLQRVPGVFRPQDGAFNSQESPKAHSPPPEKMLENGLAADAGDKEPS IRRQDSFEMRLPELPKLDVLSTQRQKSNGSDPESPVSPLLTSDPKNERSHSQTFSRPH SHSDDIPVKVKEAKDAHHREAPSFWRLAQLSFAEWLYAVLGSIGAAIFGSFNPLLAYV IALIVTAYYRPGGRNHLRDEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVR RMMFSAMLRNEVGWFDEEENTADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAI LIGMLLHWRLALVAFATLPVLTVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIY TVVAFCAGTKVMELYCLQLKKILKQSFFHGMAIGFAFGFSQFLLFACNALLLWYTALS VKKGYMDLPTAVKEYMVFSFATFALVEPFGLAPYILKRRKSLTSVFEIIDRVPKIEPD DNSALKPPNVYGSIELKNVDFCYPTRPEMLVLSNFSLKVNGGQTVAVVGVSGSGKSTI ISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN AREAEIKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPIL LLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEE GTHDSLVAKNGLYVRLMQPHFGKGLRQHRLV" CDS complement(join(2845029..2846258,2846493..2846734, 2846825..2847612,2847771..2848111,2848212..2848432, 2848552..2848862,2848939..2849198,2850156..2850356, 2850478..2850653,2850755..2850809,2852556..2852960)) /locus_tag="TCM_042896" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="P-glycoprotein 20 isoform 1" /protein_id="EOY18297.1" /db_xref="Phytozome:POPTR_0010s21720.1" /db_xref="TAIR:AT3G55320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3B9" /translation="MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDTTAEAAAA AAAAQVEAEEEMEEAEEIEPPPAAVPFSRLFACADRLDWALMIVGSLAAAAHGTALVV YLHYFAKIVHVLGIGPPEQGQGGMEVPFERFKELASTIVYIAVGVFAAGWIEVSCWIL TGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH NMATFFSGLIIGFVNCWEIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASI AEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCA LQLWVGRFLVTNDKADGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMI SRSSSGSNQEGNNLPSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN GSGKSSIIPLMERFYDPTLGEVLLDAENIKNLKLEWLRSQIGLVTQEPALLSLSIKDN IAYGRHATFDQIEEAAKIAHAHTFISSLERGYETQVGRAGLALTEEQKIKLSIARAVL LNPTILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEG QLVEMGTHDELLALDGLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSSVHSFQ ESSSPKLIKSPSLQRVPGVFRPQDGAFNSQESPKAHSPPPEKMLENGLAADAGDKEPS IRRQDSFEMRLPELPKLDVLSTQRQKSNGSDPESPVSPLLTSDPKNERSHSQTFSRPH SHSDDIPVKVKEAKDAHHREAPSFWRLAQLSFAEWLYAVLGSIGAAIFGSFNPLLAYV IALIVTAYYRPGGRNHLRDEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVR RMMFSAMLRNEVGWFDEEENTADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAI LIGMLLHWRLALVAFATLPVLTVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIY TVVAFCAGTKVMELYCLQLKKILKQSFFHGMAIGFAFGFSQFLLFACNALLLWYTALS VKKGYMDLPTAVKEYMVFSFATFALVEPFGLAPYILKRRKSLTSVFEIIDRVPKIEPD DNSALKPPNVYGSIELKNVDFCYPTRPEMLVLSNFSLKVNGGQTVAVVGVSGSGKSTI ISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN AREAEIKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPIL LLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEE GTHDSLVAKNGLYVRLMQPHFGKGLRQHRLV" CDS complement(join(2845029..2846258,2846493..2846734, 2846825..2847612,2847771..2848111,2848212..2848432, 2848552..2848862,2848939..2849198,2850156..2850356, 2850478..2850653,2850755..2850809,2852556..2852960)) /locus_tag="TCM_042896" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="P-glycoprotein 20 isoform 1" /protein_id="EOY18298.1" /db_xref="Phytozome:POPTR_0010s21720.1" /db_xref="TAIR:AT3G55320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3B9" /translation="MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDTTAEAAAA AAAAQVEAEEEMEEAEEIEPPPAAVPFSRLFACADRLDWALMIVGSLAAAAHGTALVV YLHYFAKIVHVLGIGPPEQGQGGMEVPFERFKELASTIVYIAVGVFAAGWIEVSCWIL TGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH NMATFFSGLIIGFVNCWEIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASI AEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCA LQLWVGRFLVTNDKADGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMI SRSSSGSNQEGNNLPSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN GSGKSSIIPLMERFYDPTLGEVLLDAENIKNLKLEWLRSQIGLVTQEPALLSLSIKDN IAYGRHATFDQIEEAAKIAHAHTFISSLERGYETQVGRAGLALTEEQKIKLSIARAVL LNPTILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEG QLVEMGTHDELLALDGLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSSVHSFQ ESSSPKLIKSPSLQRVPGVFRPQDGAFNSQESPKAHSPPPEKMLENGLAADAGDKEPS IRRQDSFEMRLPELPKLDVLSTQRQKSNGSDPESPVSPLLTSDPKNERSHSQTFSRPH SHSDDIPVKVKEAKDAHHREAPSFWRLAQLSFAEWLYAVLGSIGAAIFGSFNPLLAYV IALIVTAYYRPGGRNHLRDEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVR RMMFSAMLRNEVGWFDEEENTADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAI LIGMLLHWRLALVAFATLPVLTVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIY TVVAFCAGTKVMELYCLQLKKILKQSFFHGMAIGFAFGFSQFLLFACNALLLWYTALS VKKGYMDLPTAVKEYMVFSFATFALVEPFGLAPYILKRRKSLTSVFEIIDRVPKIEPD DNSALKPPNVYGSIELKNVDFCYPTRPEMLVLSNFSLKVNGGQTVAVVGVSGSGKSTI ISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN AREAEIKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPIL LLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEE GTHDSLVAKNGLYVRLMQPHFGKGLRQHRLV" CDS complement(join(2845029..2846258,2846493..2846734, 2846825..2847612,2847771..2848111,2848212..2848432, 2848552..2848862,2848939..2849198,2850156..2850356, 2850478..2850653,2850755..2850809,2852556..2852960)) /locus_tag="TCM_042896" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="P-glycoprotein 20 isoform 1" /protein_id="EOY18299.1" /db_xref="Phytozome:POPTR_0010s21720.1" /db_xref="TAIR:AT3G55320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3B9" /translation="MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDTTAEAAAA AAAAQVEAEEEMEEAEEIEPPPAAVPFSRLFACADRLDWALMIVGSLAAAAHGTALVV YLHYFAKIVHVLGIGPPEQGQGGMEVPFERFKELASTIVYIAVGVFAAGWIEVSCWIL TGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH NMATFFSGLIIGFVNCWEIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASI AEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCA LQLWVGRFLVTNDKADGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMI SRSSSGSNQEGNNLPSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN GSGKSSIIPLMERFYDPTLGEVLLDAENIKNLKLEWLRSQIGLVTQEPALLSLSIKDN IAYGRHATFDQIEEAAKIAHAHTFISSLERGYETQVGRAGLALTEEQKIKLSIARAVL LNPTILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEG QLVEMGTHDELLALDGLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSSVHSFQ ESSSPKLIKSPSLQRVPGVFRPQDGAFNSQESPKAHSPPPEKMLENGLAADAGDKEPS IRRQDSFEMRLPELPKLDVLSTQRQKSNGSDPESPVSPLLTSDPKNERSHSQTFSRPH SHSDDIPVKVKEAKDAHHREAPSFWRLAQLSFAEWLYAVLGSIGAAIFGSFNPLLAYV IALIVTAYYRPGGRNHLRDEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVR RMMFSAMLRNEVGWFDEEENTADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAI LIGMLLHWRLALVAFATLPVLTVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIY TVVAFCAGTKVMELYCLQLKKILKQSFFHGMAIGFAFGFSQFLLFACNALLLWYTALS VKKGYMDLPTAVKEYMVFSFATFALVEPFGLAPYILKRRKSLTSVFEIIDRVPKIEPD DNSALKPPNVYGSIELKNVDFCYPTRPEMLVLSNFSLKVNGGQTVAVVGVSGSGKSTI ISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN AREAEIKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPIL LLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEE GTHDSLVAKNGLYVRLMQPHFGKGLRQHRLV" CDS complement(join(2845029..2846258,2846493..2846734, 2846825..2847612,2847771..2848111,2848212..2848432, 2848552..2848862,2848939..2849198,2850156..2850356, 2850478..2850653,2850755..2850809,2852556..2852960)) /locus_tag="TCM_042896" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="P-glycoprotein 20 isoform 1" /protein_id="EOY18300.1" /db_xref="Phytozome:POPTR_0010s21720.1" /db_xref="TAIR:AT3G55320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3B9" /translation="MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDTTAEAAAA AAAAQVEAEEEMEEAEEIEPPPAAVPFSRLFACADRLDWALMIVGSLAAAAHGTALVV YLHYFAKIVHVLGIGPPEQGQGGMEVPFERFKELASTIVYIAVGVFAAGWIEVSCWIL TGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH NMATFFSGLIIGFVNCWEIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASI AEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCA LQLWVGRFLVTNDKADGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMI SRSSSGSNQEGNNLPSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN GSGKSSIIPLMERFYDPTLGEVLLDAENIKNLKLEWLRSQIGLVTQEPALLSLSIKDN IAYGRHATFDQIEEAAKIAHAHTFISSLERGYETQVGRAGLALTEEQKIKLSIARAVL LNPTILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEG QLVEMGTHDELLALDGLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSSVHSFQ ESSSPKLIKSPSLQRVPGVFRPQDGAFNSQESPKAHSPPPEKMLENGLAADAGDKEPS IRRQDSFEMRLPELPKLDVLSTQRQKSNGSDPESPVSPLLTSDPKNERSHSQTFSRPH SHSDDIPVKVKEAKDAHHREAPSFWRLAQLSFAEWLYAVLGSIGAAIFGSFNPLLAYV IALIVTAYYRPGGRNHLRDEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVR RMMFSAMLRNEVGWFDEEENTADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAI LIGMLLHWRLALVAFATLPVLTVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIY TVVAFCAGTKVMELYCLQLKKILKQSFFHGMAIGFAFGFSQFLLFACNALLLWYTALS VKKGYMDLPTAVKEYMVFSFATFALVEPFGLAPYILKRRKSLTSVFEIIDRVPKIEPD DNSALKPPNVYGSIELKNVDFCYPTRPEMLVLSNFSLKVNGGQTVAVVGVSGSGKSTI ISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN AREAEIKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPIL LLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEE GTHDSLVAKNGLYVRLMQPHFGKGLRQHRLV" CDS complement(join(2845029..2846258,2846493..2846734, 2846825..2847612,2847771..2848111,2848212..2848432, 2848552..2848862,2848939..2849198,2850156..2850356, 2850478..2850653,2850755..2850809,2852556..2852960)) /locus_tag="TCM_042896" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="P-glycoprotein 20 isoform 1" /protein_id="EOY18301.1" /db_xref="Phytozome:POPTR_0010s21720.1" /db_xref="TAIR:AT3G55320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3B9" /translation="MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDTTAEAAAA AAAAQVEAEEEMEEAEEIEPPPAAVPFSRLFACADRLDWALMIVGSLAAAAHGTALVV YLHYFAKIVHVLGIGPPEQGQGGMEVPFERFKELASTIVYIAVGVFAAGWIEVSCWIL TGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH NMATFFSGLIIGFVNCWEIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASI AEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCA LQLWVGRFLVTNDKADGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMI SRSSSGSNQEGNNLPSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN GSGKSSIIPLMERFYDPTLGEVLLDAENIKNLKLEWLRSQIGLVTQEPALLSLSIKDN IAYGRHATFDQIEEAAKIAHAHTFISSLERGYETQVGRAGLALTEEQKIKLSIARAVL LNPTILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEG QLVEMGTHDELLALDGLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSSVHSFQ ESSSPKLIKSPSLQRVPGVFRPQDGAFNSQESPKAHSPPPEKMLENGLAADAGDKEPS IRRQDSFEMRLPELPKLDVLSTQRQKSNGSDPESPVSPLLTSDPKNERSHSQTFSRPH SHSDDIPVKVKEAKDAHHREAPSFWRLAQLSFAEWLYAVLGSIGAAIFGSFNPLLAYV IALIVTAYYRPGGRNHLRDEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVR RMMFSAMLRNEVGWFDEEENTADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAI LIGMLLHWRLALVAFATLPVLTVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIY TVVAFCAGTKVMELYCLQLKKILKQSFFHGMAIGFAFGFSQFLLFACNALLLWYTALS VKKGYMDLPTAVKEYMVFSFATFALVEPFGLAPYILKRRKSLTSVFEIIDRVPKIEPD DNSALKPPNVYGSIELKNVDFCYPTRPEMLVLSNFSLKVNGGQTVAVVGVSGSGKSTI ISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN AREAEIKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPIL LLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEE GTHDSLVAKNGLYVRLMQPHFGKGLRQHRLV" mobile_element 2853009..2853072 /note="source:scaffold_1_CACTA_0031 15 76" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2855126..2855238 /note="source:scaffold_1_CACTA_0008 6301 6397" /mobile_element_type="transposon:TIR/CACTA" gene 2857545..2861493 /locus_tag="TCM_042897" /note="dbxref CacaoGD:Thecc1EG042897" mRNA join(2857545..2857991,2858501..2858581,2858761..2858843, 2858968..2859090,2859205..2859276,2860394..2860490, 2861166..2861493) /locus_tag="TCM_042897" /product="PsbP-like protein 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016618001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042895t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21730.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b041416t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc271t6_C1" mRNA join(2857545..2857758,2857871..2857991,2858501..2858581, 2858761..2858843,2858968..2859090,2859205..2859276, 2860394..2860490,2861166..2861433) /locus_tag="TCM_042897" /product="PsbP-like protein 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016618001" /inference="similar to AA sequence:Phytozome:GSVIVT01016618001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc271t6_C1" CDS join(2857693..2857758,2857871..2857991,2858501..2858581, 2858761..2858843,2858968..2859090,2859205..2859276, 2860394..2860490,2861166..2861269) /locus_tag="TCM_042897" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="PsbP-like protein 1 isoform 1" /protein_id="EOY18303.1" /db_xref="Phytozome:GSVIVT01016618001" /db_xref="TAIR:AT3G55330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLZ4" /translation="MAALQNSVPSLHHTLFINFFPQKGLRKHHHGAFLCCKRGVSVHV RAEQSSSAADSSSSSHFQDSCGRRQMIAAGITAPLVSIVDQTPIAFAAETKKGFLSMT DKKDGYSFLYPFGWQEVVIEGQDKVFKDVIEPLESVSVNLIATSKQDIRDFGSPQEVA ETLIKKVLAPATQKTKLIGAAEHDVDGKAYYTFEFVAQAPNFTRHALSAVCIGNGKFY TLTTGANERRWDKMKDRLFTVIDSFRIFNV" CDS join(2858521..2858581,2858761..2858843,2858968..2859090, 2859205..2859276,2860394..2860490,2861166..2861269) /locus_tag="TCM_042897" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042895t1" /codon_start=1 /product="PsbP-like protein 1 isoform 2" /protein_id="EOY18304.1" /db_xref="Phytozome:POPTR_0010s21730.1" /db_xref="TAIR:AT3G55330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLZ4" /translation="MIAAGITAPLVSIVDQTPIAFAAETKKGFLSMTDKKDGYSFLYP FGWQEVVIEGQDKVFKDVIEPLESVSVNLIATSKQDIRDFGSPQEVAETLIKKVLAPA TQKTKLIGAAEHDVDGKAYYTFEFVAQAPNFTRHALSAVCIGNGKFYTLTTGANERRW DKMKDRLFTVIDSFRIFNV" mobile_element complement(2860249..2860312) /note="source:CACAO_M_E69306_F123_scaffold_9 4988 5057" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2860281..2860321) /note="source:CACAO_M_E44848_F172_scaffold_6 1901 1942" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2862867..2865158 /locus_tag="TCM_042898" /note="dbxref CacaoGD:Thecc1EG042898" mRNA join(2862867..2863530,2863623..2865158) /locus_tag="TCM_042898" /product="Ankyrin repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g06200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042916t1" /inference="similar to AA sequence:Phytozome:Glyma04g06200.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc439t11" CDS join(2862934..2863530,2863623..2864504) /locus_tag="TCM_042898" /note="paralog of Thecc1EG042916t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18305.1" /db_xref="Phytozome:Glyma04g06200.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDWRMIGAAQTGNISVLYELILEDPYVLERIDQVPFLDTPLHVA ACAGHVDFVMEMMNLKPSFARKLNQAGFSPMHLALRNDKIQAVLRLLKFDIGLVRVKG REGLTPLHHAVGTGNLDLSIRFLEACPEAIEDVTVRDETALHLAVKNDMFEAFEVLMG WLRRSRHEAAQRWENELLSWRDIEGNTVLHIAAIRNRPQVVKVLLENFSQDHINAKNL EGLTALDIVLERQRIERQVDNREIMDMLIKAGGLRGSSLPKNPNSSINISSFRSKMSY FQKFVTMAARGNKGISNGMRNTFLVVTVLIITATYDASLNPPKKGDNVSSHTNKVWLL EANPPSGKYLPAEDWQNLVDASTMFWLYNTLTFWAAIGLTAYLLPNRLICLFLLITLS LFGSCYMLLVAVISWKLQSLISLAPSYLTYHAVSVVNYCSSTLIAVLVSYRIASYVCC RFVPRRKIFCLVQLLSFLSIVICILTPAVLNVETILKSNFFL" gene 2866207..2867401 /locus_tag="TCM_042899" /note="dbxref CacaoGD:Thecc1EG042899" mRNA 2866207..2867401 /locus_tag="TCM_042899" /product="Ankyrin repeat protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042912t1" /inference="similar to AA sequence:TAIR:AT5G15500.2" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage" CDS 2866398..2866673 /locus_tag="TCM_042899" /note="paralog of Thecc1EG042912t1" /codon_start=1 /product="Ankyrin repeat protein" /protein_id="EOY18306.1" /db_xref="TAIR:AT5G15500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B1Q4U3" /translation="MDERHERLRGAAQAGNNDALYAVIREGAYLLDGIDQIPFFDTPL HIAAAAGHTDFAMEIMNLKPSLALKLNHDGFSPIQLALQNGRSLVSW" gene 2867298..2870779 /locus_tag="TCM_042900" /note="dbxref CacaoGD:Thecc1EG042900" mRNA join(2867298..2867558,2867729..2867825,2868264..2868448, 2868537..2868917,2869971..2870779) /locus_tag="TCM_042900" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" CDS join(2867495..2867558,2867729..2867825,2868264..2868448, 2868537..2868917,2869971..2870626) /locus_tag="TCM_042900" /note="weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18307.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ARY3" /translation="MASSSYNALAPQFSQEKITQFAFDSLFIIILTCDNPKDAWDKIK EEFEGSDRTRSCNQMGHVEKVCKAKKVVVEEKTAIVENEDENEELLFMARTDADPLSN NIWLIDNGCSNHLSIGTVSVETPKGVKYITGVHYIPEVDQNLLSVGKLTRSHYALLFE DQYYTIHDPTGAEMITVEMKNNCYPLNLMNANQVAFYCEMDTSELWHKRLGHVNYGSL AKMATDDLVEGLPAIKNPDKVGDISGNKLAKEDGFGQADVVTYRSMVGSLLYLLATRP DIMYSTSLLSRFMQAPSTLHFIAVKRIIKNVKGTLNYGLRYEKNENSELHGYSDSDWA GSLEDSKSTRGFCLSFGSGVFCWNNKKQEVVAQFSTEAEYIATAAATNHVVWLRKLLN DLGFKQEKATLIHVDNKSAIAIAKNPGQHGRAKHIRVKHHAIRELVKELSYTACRHFH KRIAQRKLSF" gene 2867502..2871766 /locus_tag="TCM_042901" /note="dbxref CacaoGD:Thecc1EG042901" mRNA join(2867502..2867696,2871284..2871766) /locus_tag="TCM_042901" /product="Uncharacterized protein" /note="quality class is medium-utrpoor-expresste, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc21125t1" CDS 2871569..2871763 /locus_tag="TCM_042901" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18308.1" /translation="MLPKIINNFFFMPRACLSVLPLVLFVFFWLLSLGSAASAEQFVK QRRDSRETLVHKTPTISRIN" mobile_element 2874499..2876434 /note="source:INTACT257_F186_scaffold_6-int 17147 18838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2876459..2876734) /note="source:scaffold_5_CACTA_0586 15631 16218" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2876735..2877402 /note="source:INTACT117_F146_scaffold_2-int 2271 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2876899..2877653) /note="source:scaffold_5_CACTA_0586 15353 16106" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2877001..2878616 /note="source:INTACT726_F314_scaffold_5-int 2753 4337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2877403..2877532) /note="source:scaffold_5_CACTA_0586 15350 15630" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2877654..2878980) /note="source:INTACT1232F_F375_scaffold_6-int 7943 10096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2879081..2885722 /note="source:INTACT117_F146_scaffold_2-int 4232 10899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2885823..2886572 /note="source:INTACT72F_F343_scaffold_2-int 10196 10968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2886615..2886782 /note="source:INTACT72F_F343_scaffold_2-int 568 763" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2887547..2888560 /locus_tag="TCM_042903" /note="dbxref CacaoGD:Thecc1EG042903" mRNA 2887547..2888560 /locus_tag="TCM_042903" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042905t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.48 coverage" CDS 2887659..2887922 /locus_tag="TCM_042903" /note="paralog of Thecc1EG042905t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18309.1" /translation="MDESLKRATQEGNIVELYASIQRDGNVLRQIDEMEFVDTPLHIA AAEGCFDFAMEVMILKPSFARKLNQQGLSPIHLAWKRGVKTKF" mobile_element 2888925..2890576 /note="source:scaffold_10_CACTA_0130 7928 9598" /mobile_element_type="transposon:TIR/CACTA" gene 2890582..2892613 /locus_tag="TCM_042904" /note="dbxref CacaoGD:Thecc1EG042904" mRNA join(2890582..2891315,2891403..2892613) /locus_tag="TCM_042904" /product="Ankyrin repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g06200.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042910t1" /inference="similar to AA sequence:Phytozome:Glyma04g06200.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1810t1" CDS join(2890719..2891315,2891403..2892287) /locus_tag="TCM_042904" /note="paralog of Thecc1EG042910t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18310.1" /db_xref="Phytozome:Glyma04g06200.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDWWMSEAAQTGNINVLYELIQEDPYVLERIDQVPFLDTPLHIA ACAGHVDFVMEMMNLKPSFARKLNQAGFSPMHLALQDEKIQAVLRLLKFDKGLVRVKG REGMTPLHHVVGTGNLDLSIRFLEFCPEAIEDVTVRDETAFHLTVKNDMFEAFEVLIG WLRRSRHEAAQRWENELLSWADIEGNTILHIAAIRNSPQVVEVLLENLSQDHINSKNL EGLTALDILLEHQRNERQVDNREIMDMLSTAGGLRGSSLPNNPHSSINVNSLRSKMSY FQKFATIAARGKKGISYEMRNAFLVVTVLIITATYDASLNPPKKGDDVSFKNYQVSSS YTFYQGANPPTGGGNSLQDLTDLVDASSMFWLYNTLTFWVALGLTAYLLPSRTVCLFL LITLSLFGSCYMLLVAVVSWKLQFLIPLTPSAFSYHALSVVNYCLSTLIAVLVAFRIG RYVFYRFVPRRKIFCLVQFVSFLLIVICILTPAVLNVETIFFL" gene 2894873..2902211 /locus_tag="TCM_042905" /note="dbxref CacaoGD:Thecc1EG042905" mRNA join(2894873..2895055,2896606..2897215,2897343..2898001, 2899224..2899500,2900947..2900995,2901719..2902211) /locus_tag="TCM_042905" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042929t1" /inference="similar to AA sequence:TAIR:AT4G10720.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8242t7" CDS join(2896634..2897215,2897343..2898001,2899224) /locus_tag="TCM_042905" /note="paralog of Thecc1EG042929t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18311.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDESLKRAAREGNIVELYASIQRDGNVLRQIDEMEFVDTPLHMA AAEGCFDFAMEVMILKPSFARKLNQEGLSPIHLAVEKGHKELALHLMQNDKNLVRVKG RLGETPLHYAVTGAENLDLLARFLEACPECIRDMATTNQTALHIATRNDNLEALELLC RMLRKSDYCEDVVNQKDRNGDTALHIAARNNQPKMLKLLLKCKADKLATNQAGRTALA IACELNNRESIKILRGWRSAKVLSYQYKIRKQMFKTVTKASEVIFQGMDSISSEDRNA LLVVLGLLLTATYQASISPPGSVRQGDGSSNSDSTVGESVMDEVNFLLFYIPACTVFL VAFFLTLGLLRPYPHRFKTALQVLLAFLAISFNEAITFIAPTDFATDVINLFSVLVFV LMMVMCVAYRVSKVSVLFLGC" mobile_element 2899655..2901636 /note="source:CACAO_M_E4368_F316_scaffold_2 1 1969" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2902149..2903842) /note="source:CACAO_M_S_E64889_F3_scaffold_5 1 1696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2904248..2905853) /note="source:CACAO_M_E84368_F4_scaffold_10 11579 13208" /mobile_element_type="retrotransposon:LTR/Copia" gene 2911535..2912888 /locus_tag="TCM_042906" /note="dbxref CacaoGD:Thecc1EG042906" mRNA join(2911535..2911719,2911846..2912888) /locus_tag="TCM_042906" /product="Ankyrin repeat-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042905t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage" CDS join(2911543..2911719,2911846..2912280) /locus_tag="TCM_042906" /note="paralog of Thecc1EG042905t1" /codon_start=1 /product="Ankyrin repeat-containing protein" /protein_id="EOY18312.1" /translation="MATTNQTALHIATRNDNVEALELICRMLRKSDYCEDVVNQKDRN GDTALHIAARNNQPKMLKLLLKCKADKLATNQAGRTALAIACELNNRESIKILRGWRS AKVLSYQYKIRKQMFKTVTKASEVIFQGMDSILSEDRNALLVVLGLLLTATYQTSISP PGSVRQGDGSSNSDFTVGQSVMDEVNFLLFYIPACTVFIVAFS" gene 2913353..2914135 /locus_tag="TCM_042907" /note="dbxref CacaoGD:Thecc1EG042907" mRNA 2913353..2914135 /locus_tag="TCM_042907" /product="Ankyrin repeat protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042912t1" /inference="similar to AA sequence:TAIR:AT4G10720.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS 2913734..2914072 /locus_tag="TCM_042907" /note="paralog of Thecc1EG042912t1" /codon_start=1 /product="Ankyrin repeat protein" /protein_id="EOY18313.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B1Q4U3" /translation="MDERYERLRRASQAGNIDALYALIREDAYLLEGIDQIPFFDTPL HIAAAAGHTDFIMEIMNLKLSLALKLNNDGFSPIHLVLQNGQEETVLDLLGMKKDLVL NLKKILKGLK" gene 2917455..2919315 /locus_tag="TCM_042908" /note="dbxref CacaoGD:Thecc1EG042908" mRNA join(2917455..2918142,2918268..2919315) /locus_tag="TCM_042908" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042905t1" /inference="similar to AA sequence:TAIR:AT4G10720.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1830t1" CDS join(2917504..2918142,2918268..2918702) /locus_tag="TCM_042908" /note="paralog of Thecc1EG042905t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18314.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MCLNIFFYFLHIFVIWLPHMDESLRRAAREGNIVELYASIQRDG NVLRQIDEMEFVDTPLHIAAAEGCFDFAMEVMILKPSFARKLNQEGLSPIHLAVEKGH KELALHLMQNDKNLVRVKGRLGETPLHYAVTGAENLDLLARFLEACPECIRDMATTNQ TALHIATRNDNLEALELLCRMLRKSDYCEDVVNQKDRNGDTALHVATRNNQPKMLKLL LKCKADKLATNQAGRTALAIACELNNRESIKILRGWRSAKVLSYQYKIRKQMVKKVTK ASEVIFQGLDSISSEDRNALLVILGLLLTATYQASISPPGSVWQGDGSSNSDSTVGKS VMDQVNFLLFYIPACTVFIVAFS" mobile_element 2920754..2921398 /note="source:scaffold_1_CACTA_0011 11664 13486" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2921399..2922858) /note="source:INTACT622F_F362_scaffold_4-int 10274 11758" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2923129..2926988) /locus_tag="TCM_042909" /note="dbxref CacaoGD:Thecc1EG042909" mRNA complement(join(2923129..2923242,2926110..2926421, 2926854..2926988)) /locus_tag="TCM_042909" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(join(2926275..2926421,2926854..2926925)) /locus_tag="TCM_042909" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18315.1" /translation="MVKEHLDVPFGALPAMMKHSAERDSIGDVAIVHHLCEANSFVDA LAKYGVDTDSMFAAWWSNDSWSDICDVV" gene 2927045..2929059 /locus_tag="TCM_042910" /note="dbxref CacaoGD:Thecc1EG042910" mRNA join(2927045..2927815,2927903..2929059) /locus_tag="TCM_042910" /product="Ankyrin repeat-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g27040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042904t1" /inference="similar to AA sequence:Phytozome:Glyma04g06200.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1820t1" CDS join(2927147..2927815,2927903..2928793) /locus_tag="TCM_042910" /note="paralog of Thecc1EG042904t1" /codon_start=1 /product="Ankyrin repeat-containing protein" /protein_id="EOY18316.1" /db_xref="Phytozome:Glyma04g06200.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDWRMSEAAQTGNIKRMSEAAQTGNINRMSEAAQTGNINVLYEL IQEDPYVLERIDQVPFLDTPLHIAACAGHVDFVMEMMNLKPSFARKLNQAGFSPMHLA LKDEKIQAVLRLLKFDKGLVRVKGREGMTPLHHVVGTGNLDLSIRFLEVCPEAIEDVT VRDETAFHLTVKNDMFEAFEVLIGWLRRSRHEAAQQWENELLSWADIEGNTILHIAAI RNSPQVVEVLLENLSQDHINSKNLEGLTALDILLEHQRNERQVDNREIMDMLSTAGGL RGSSLPNNPHSSINVNSFRSKMSYFQKFTTIAARGKKGIPYEMRNAFLVVTVLIITAT YDALLNPPEKSDDVSFQNYQVSGSYSFSQQANPPMGGDNPAQDITDLIDASSMFWLYN TLTFWVALGLTAYLLPSRTICLLLLITLSLFGSCYMLLVAVVSWKQQFLVSLTPSHLL YHALSVVNYCLSTLIAVLVAFRIARYVIYRFVPRKKIFCLVQFVSFLFIVICILTPTV FNVQTMSFLWS" mobile_element 2928933..2931305 /note="source:CACAO_Mutator_E592_scaffold_3 4019 6443" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2931303..2934047 /note="source:scaffold_8_CACTA_0867 3190 6002" /mobile_element_type="transposon:TIR/CACTA" gene 2933899..2936136 /locus_tag="TCM_042912" /note="dbxref CacaoGD:Thecc1EG042912" mRNA join(2933899..2935016,2935157..2936136) /locus_tag="TCM_042912" /product="Ankyrin repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g27040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042915t1" /inference="similar to AA sequence:Phytozome:Glyma12g27040.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(2934432..2935016,2935157..2935930) /locus_tag="TCM_042912" /note="paralog of Thecc1EG042915t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18317.1" /db_xref="Phytozome:Glyma12g27040.1" /db_xref="TAIR:AT4G10720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDECYERLRGAAQAGNIDALYALIREDAYLLDGIDQMPFFDTPL HIVAAAGHTDFAMEIMNLKPSLALKLNHDGFSPIHLALQNGQKETVLDLLGMDKDLVR VKGKEGKTPLHYVVGEADLSLVFTFLLCCPECIRDVTNQNETALHIAAQKNLLEALQV LVGLLRRTHHKDGKLWVKEVLNWKDKEGDTVLHIAMVELLLDCGIEKNAMNWSGLTAM DILQGQSQVDNKRTLEVLRYFGCSNASSIHTNSTFVKFLRSKISFSERSNIVISRMRK NISNGTRNALLVVLGLILTTTYQSAVNPPYDLFQPVIRQEMIPQDAGGQWVSPNDGIM AALDPLALSFSIFNAIDFLVTPLVTLLILPWVPYGQLLHVLLLLVFILFVASMGLSLA STTSVIGIGVFCSFVVITIILGIFIVMNKVRSGKVDTDCIKEVGDRIRLHGHEDDDIK KK" mobile_element 2938877..2939892 /note="source:CACAO_on_E241_scaffold_112 3 1141" /mobile_element_type="transposon:TIR/hAT" gene 2940156..2943717 /locus_tag="TCM_042913" /note="dbxref CacaoGD:Thecc1EG042913" mRNA join(2940156..2940797,2941415..2941942,2942041..2942234, 2942766..2943717) /locus_tag="TCM_042913" /product="Ankyrin repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g27040.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042915t1" /inference="similar to AA sequence:Phytozome:Glyma12g27040.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(2940165..2940797,2941415..2941942,2942041..2942234, 2942766..2942769) /locus_tag="TCM_042913" /note="paralog of Thecc1EG042915t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18318.1" /db_xref="Phytozome:Glyma12g27040.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MRKPLIIFIFIYLTMKRLKSAARAGNIDELYTLIRRDAYILERV DQMPFADTPLHIASAAGHIDFAMEIMNLKPSFARKLNQDGFSPIHLALQQGQTEMVLR LLAIDKDLVRVKGREGKTPLHYVASEGNLSLLAQFLLRCPKCIQDVTIRNETALHIAA ENNNLKALRVLLLSLKRTNLYGKSSEKKLLNFRDKDGNTVLHIAASTNQPQMVKLLIE CKVSINKTNSRGLTALDILESMSNVDNRDSSEILRDFGGLNASATRRRPSLHVMLGSK ITLLENAFGEVFHDIITMSADRSNALLVVLVLILTATYQAALAPPARFSGADIGSDSA NNTSTDSTVGKSVMGSTAFLLFYIPNTIAFIIAMILILGLLAIVASGITTLLLFTGSA ESHRPNKKTWETFDSEGDTTTLIVEIYIPGKYLVEGLEIQASMRWIKWITSENSLSLF VS" mobile_element 2943817..2943937 /note="source:scaffold_4_CACTA_0502 1 121" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2956984..2960082) /note="source:CACAO_M_S_E145568_F62_scaffold_10 1 3099" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2965542..2967751 /locus_tag="TCM_042916" /note="dbxref CacaoGD:Thecc1EG042916" mRNA join(2965542..2966238,2966331..2967751) /locus_tag="TCM_042916" /product="Ankyrin repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G15500.2.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042904t1" /inference="similar to AA sequence:Phytozome:Glyma04g06200.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1801t1" CDS join(2965642..2966238,2966331..2967227) /locus_tag="TCM_042916" /note="paralog of Thecc1EG042904t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18319.1" /db_xref="Phytozome:Glyma04g06200.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MYWRMIEAARTGNINVLYELIQEDPYVLERIDQVPFLDTPLHLA AFAGHIDFVMEMTNLKPSFARKLNQVGFSPMHLALQNDKTQAVLRLLKFDKALVRVKG REGLTPLHHVVGTGNLDLSIRFLEACPEAIEDVTVRDETAFHLAVKNDMFEAFVVLMG WLLRSCHEAAQRWENELLSWRDIEGNTVLHIAAIRNRPQVVKVLLENLSQDHINAKNL EGLTALDIVLEHQRNERQVDNREIMDMLSKAGGLRGSLLPKNPNSSININSFRSKMSY FQKFATMAARGKKGISNEMRNTFLVVTVLIITATYDASLNPPNKGDNLLSENYQVSSF PRFSQKANLPTGGHNPPQEFTDLIDVSSMFWLYNTLTFWVALGLTAYLLPSRTICLFL LITLSLFGSCYMLLVAVVSWKLQYLISPKPLHLSYHALSIVNYSLSTLIAVLVATRIA GYVFCRFVPRRKIFCLVQLLSFLSIASCIVTPAVLNVEFILRSNFFL" gene 2967965..3036086 /locus_tag="TCM_042917" /note="dbxref CacaoGD:Thecc1EG042917" mRNA join(2967965..2968021,2976200..2976877,2977005..2977122, 2979795..2979800,3035775..3036086) /locus_tag="TCM_042917" /product="Ankyrin repeat-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042920t1" /inference="similar to AA sequence:Phytozome:Glyma06g36110.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc452t4" mobile_element 2970519..2972566 /note="source:INTACT741_F17_scaffold_3-int 6582 8645" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2972573..2973195 /note="source:CACAO_M_S_E88745_F17_scaffold_7 898 1524" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(2976296..2976877,2977005..2977122,2979795..2979799) /locus_tag="TCM_042917" /note="paralog of Thecc1EG042920t1" /codon_start=1 /product="Ankyrin repeat-containing protein" /protein_id="EOY18320.1" /db_xref="Phytozome:Glyma06g36110.1" /db_xref="TAIR:AT5G54610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B1Q4U3" /translation="MDESLRRAAQEGNIVELYASIRRNGDVLRHIDEMEFVDTPLHIA AAQGCIDFAMEIMILKPSLAKKLNQEGFSPIHLAVENGHKELAVHLMQNDKSLVRVKG RKGETPLHYAITKEQNLDLLARFLEACPECIRDMTTTNRTALHIATESNRLEALQLLC RMLWKSDDCGDVVNQKDRNGDTALHMAARNNQSQILKLLLNCKADKFATNQAGSTALA VAYELNNRESINILRG" mobile_element complement(2977287..2977370) /note="source:CACAO_M_E5326_F22_scaffold_2 3416 3481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2977294..2977405 /note="source:CACAO_M_E5899_F5_scaffold_2 20723 20824" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2977526..2979083 /locus_tag="TCM_042918" /note="dbxref CacaoGD:Thecc1EG042918" mRNA join(2977526..2978233,2978405..2979083) /locus_tag="TCM_042918" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g27040.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042912t1" /inference="similar to AA sequence:TAIR:AT4G10720.2" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS join(2977673..2978233,2978405..2978782) /locus_tag="TCM_042918" /note="paralog of Thecc1EG042912t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY18321.1" /db_xref="TAIR:AT4G10720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDWVLREAARAGNIDALYEQFQEDPHLSDRIDAVPFIDTPLHEA AAAGQVDFAAEMMNLKPSFASKINPDGFTPLHLALQKHQTQLLYELLKINKDLVRVKG KKGVTLLHYAAELGDIDILAKFLVACPQCIKDVTVGGKTALHIAVENNNVEALEVLAR WLRGTPNKDGGFWEIEVMNWKDKDGNTMIRLLLECGIRKNIINLNGLTALDVLQCQGQ VDNREAVDVLRQAGGLNASLIPESTPLAELFRSKVEFSERLMIIVTRARLNIPSDTRN AFLVLAGLVITATYQAIFNPPGGVRQAEAGSTQVPS" gene 2978465..3022957 /locus_tag="TCM_042919" /note="dbxref CacaoGD:Thecc1EG042919" mRNA join(2978465..2978540,3022170..3022957) /locus_tag="TCM_042919" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT4G10720.1.3" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1093t1" gene 2980721..2984145 /locus_tag="TCM_042920" /note="dbxref CacaoGD:Thecc1EG042920" mRNA join(2980721..2980763,2981701..2982395,2982523..2983070, 2983349..2983397,2983841..2983935,2984020..2984145) /locus_tag="TCM_042920" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042928t1" /inference="similar to AA sequence:TAIR:AT4G10720.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS join(2981814..2982395,2982523..2983070,2983349..2983397, 2983841..2983935,2984020..2984119) /locus_tag="TCM_042920" /note="paralog of Thecc1EG042928t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18323.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MEESLRRAAQEGNIVELYASIQRDGNVLRKIDEMEFVNTPLHIA AAEGCIDFAMEIMILKPSFARKLNQEGFSPIHLAVDKGHTELALQLMQNDKNLVRVKG KQGETPFHYAITREQNLDLLTRFLEACPECIQDMTTKNETPLHIATGNNRLEALELLC RMLRKSDYRQDVVNQKDRNGDTALHIAARNNQPQMLKLLLNCKADKLAKNLAGSTALD IAHELNNRESVNILHGWRRARVQEQMFKTVTKASEVIFKGMDSISSEDRNALLVILGL LLTATYQASICPPGSVWQGDSSSNSNPTVGYDKKLPGTSVMDEVDFLQFYIPAYTVFI VAFFLTLGLLKPYPHGFRTSLQVLLAFLAISFDQSVTFISPTSYNSSHILDFTWAVSI LGSSLEIPKTVIFGPKQRRREGELAGAPALAKVPWMPPQVSCSRAGDLMSPYREENHW QRNCSDC" mobile_element complement(2985432..2985899) /note="source:scaffold_10_CACTA_0130 8676 9191" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2989951..2994478) /note="source:CACAO_M_E33977_F20_scaffold_4 11979 16541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2991371..3000604 /note="source:CACAO_Mutator_E1410_scaffold_6 6 9808" /mobile_element_type="transposon:TIR/Mutator" gene 2991905..2996065 /locus_tag="TCM_042921" /note="dbxref CacaoGD:Thecc1EG042921" mRNA join(2991905..2992452,2992554..2992706,2992796..2993054, 2993294..2993312,2993449..2993520,2994337..2994449, 2994534..2994626,2994705..2995002,2995092..2995201, 2995360..2996065) /locus_tag="TCM_042921" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014994t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS join(2991973..2992452,2992554..2992706,2992796..2993054, 2993294..2993312,2993449..2993520,2994337..2994449, 2994534..2994626,2994705..2995002,2995092..2995201, 2995360..2995910) /locus_tag="TCM_042921" /note="paralog of Thecc1EG014994t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18324.1" /translation="MDHELWFAIGKSKARLSKQEFCLITGLKFGPMLDVFRRPYEVAA DGIHARYWNGQDSVKLQALLDTFRRSNFKRPRDATKMAFVLIANNILFGQYYRIRVTP WLLSLVEDIDAWNVFPWGHYVWKLTLDYLLKGFKVPDLSVTKETRLHYNIYGFAWVIQ FWAMEAIPAFQKIVAPFGPKDNVHPRMCRWDCNQKPKDFYKTIQKLESSDQLWALETL EPTADKALREYFVDIDVPLSEGNEYVPIGHMEDLSDWGLGARQKRKSLNEQRASGGTK QMRTVAALVDELIDEGDDHGQVYGSDDSLRKRRQVLKHKLVRLHCRLLKSRRVSQHFL IILGVSPSLSCYAWRVTTFYLFCMACDNILLGGPSHCAGLEHDNADDRQHHEPGVDID DDVLDDAEGEHLPPVDAFVDAAAGAIVLYRESTPDAVEIRLSSPESSVVHHGAAKISD PTERARLKMASKYMASPFVDPLVTHRDVRDKIVENYEAFKKEESARRNVGILGDQGAD FFITLEDPNEEMTSEHIDACLSLLYTIRMLHTKFPIEDARAKMQIPDELRGYVEGERP TYAKKWEDVDFILAPCNVGGHWVVAKIDLVRWTIKVVDSARTSDAKDNGVRAGQMTPL TTMMPFISHQAGYFNNIRQKRQDLTSMPLDIHLPKAKVYRQNDSVSCGMLMIGYIEHI LQSEKIEIKQNMIAKMRRQYALEIFSNSCESEP" mobile_element 3000460..3000818 /note="source:scaffold_10_CACTA_0141 1933 2252" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3000787..3001361 /note="source:scaffold_1_CACTA_0009 13257 13832" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3002528..3002900 /note="source:CACAO_M_S_E99903_F108_scaffold_9 2249 2636" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3002732..3013294 /locus_tag="TCM_042924" /note="dbxref CacaoGD:Thecc1EG042924" mRNA join(3002732..3002787,3008320..3008377,3011675..3012567, 3012659..3013294) /locus_tag="TCM_042924" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042944t1" /inference="similar to AA sequence:TAIR:AT4G10720.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.21 coverage" mobile_element 3003453..3005058 /note="source:INTACT618_F274_scaffold_3-int 3422 5079" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3006014..3006589) /note="source:CACAO_M_S_E145566_F28_scaffold_10 1 576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3007047..3007443 /note="source:scaffold_3_CACTA_0388 8077 8453" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3007093..3009199) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18189 20385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3009874..3010153 /note="source:scaffold_3_CACTA_0384 1227 1496" /mobile_element_type="transposon:TIR/CACTA" CDS join(3011974..3012567,3012659..3013264) /locus_tag="TCM_042924" /note="paralog of Thecc1EG042944t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18325.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDERLRRAAQLGNIDALYDLIEDDADVLRRIDEMEFVDTPLHIA AAQGHTEFAMGLMNLKPSFARKLNQRCFSPIHLALQEKQEKMVDDLLSIDKDLVRVKG REGYTPLHHAVREGNVPLLSKFLKNCPNSIFDLTNRKETALHIAAQNNNLEAFQAILF WIQKTRECHYREKRRILNLQDKDGNTVLHIAASNNQTQMIKLLIESKKVDSNTVNRSG FTALRVLQEQARVDSGESVNILKRAEDPVSPLSVFTKSSIETDLDQLSYDISKMNVDT INALLVVFALILTMTYQALLSPPGGAEAAGKSVLKPYMFILFYTSNLAAFAITWFLAV FIIQTVAREIAYFVDKLFILIWFCYIVAHVIISPPPYAGWVAFAAAYIIGSSLFVIGL RIRRKRN" gene 3013342..3019515 /locus_tag="TCM_042925" /note="dbxref CacaoGD:Thecc1EG042925" mRNA join(3013342..3013400,3017424..3018094,3018218..3019515) /locus_tag="TCM_042925" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042936t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc452t4" CDS join(3017918..3018094,3018218..3018535) /locus_tag="TCM_042925" /note="paralog of Thecc1EG042936t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18326.1" /translation="MTTANRTALHIATESNRLEALQLLCRMLWKSDDCGDVVNQKDRN GDTALHMAARNNQSQILKLLLNCKADKFATNQLVQRHFLLQTNLITESINILRGWSNV GVLSFRYKMRKRISKIVTKASEVIFQGMDRISSEDRNALLAILGLLLTATYQASISPP GSVW" mobile_element 3019518..3019594 /note="source:CACAO_PIF_E465_scaffold_115 1163 1240" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS 3022250..3022747 /locus_tag="TCM_042919" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18322.1" /translation="MIIVTRARLNIPSDTRNAFLVLAGLVITATYQAIFNPPGGVRQA EAGPTQVPSGAGRSVMDTNSFLWFYVPNTAAFLTTLFLTVLFLIIGPNGELVLLPLLP LVICYVMSTLVITPTATFTYYIWLTLVIAVASGCWLFGAHLYWLLKIWKVNRSSGELT LSVLS" gene 3023438..3025708 /locus_tag="TCM_042928" /note="dbxref CacaoGD:Thecc1EG042928" mRNA join(3023438..3024398,3024526..3025708) /locus_tag="TCM_042928" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042920t1" /inference="similar to AA sequence:TAIR:AT4G10720.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc443t21" CDS join(3023898..3024398,3024526..3025242) /locus_tag="TCM_042928" /note="paralog of Thecc1EG042920t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18327.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MHQSKEMEFVNTPLHIAAAEGGIDFAMEIMILKPSFARKLNQEG FSPIHLAVEKGHKELALQLMQNNKNLVRVKGKQGETPFHNAITREQNLDLLTRFLEAC PECIQDMTTKNETPLHIATGNNRLEALELLCRMLRKSDYCQDVVNQKDRNEDTALHIA RRNNQPQMLKLLLNCKADKLTTNQAGSTLAIAHELNNRESVNILRGWRRARVQEQMFK TVTKESEVIFLGMDSISSKDRSALLVILGLPLTGTCQASISPPGSVWQGDSSSNSNFT VGYDQKFPGTSVMDEVDLLQFYIPAYAVFIVAFFLTLGLLKPFPPGFRTSLHVLLAFL AISFDQSITFISPTDLAYLVICTFSTLVFICTMFMCIAYRVSKISVLILGCWLAPGMY GPSWIGTLLITEF" gene 3025526..3036736 /locus_tag="TCM_042929" /note="dbxref CacaoGD:Thecc1EG042929" mRNA join(3025526..3025729,3034780..3036166,3036315..3036736) /locus_tag="TCM_042929" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042920t1" /inference="similar to AA sequence:TAIR:AT4G10720.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc452t4" mobile_element complement(3026067..3028555) /note="source:CACAO_on_SS_E42_scaffold_2 19408 21890" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3028554..3028652 /note="source:scaffold_4_CACTA_0511 13027 13128" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3032025..3033471 /note="source:INTACT16_F6_scaffold_9-int 1 1423" /mobile_element_type="retrotransposon:LTR/Unclassified" CDS join(3034808..3036166,3036315..3036326) /locus_tag="TCM_042929" /note="paralog of Thecc1EG042920t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18328.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDESLKRAAQEGNIVELYASIQRDGNILRHINEIEFVDTPLHIA AAQGCIDFAMELMILKPSFARKLNHEGFSPIHLAVEKGHKELALHLMQNDKNLVRVKG KRGETPLHYAIPREQNFDLLARFLEACPECVRDMTTTNQTALHIATRHNRLEALELLC RMLRKSDYCEDVVNRKDRNGDTALHIAARNNQSKVRSLPLLISFTFIKKEWINSLIWD CISWSIDCGFCLCLKLSIKQMLKLLLKCKADKHAINQAGSTALAVANELNNIESSNIL HGWGSARVLNFEYKIQKQIVKNVTKASEVIFQGMDSVSSEDRNALLVILGLLLTATYQ ASISPPGSVWQGDGSSNSNSTVGHHEKLPGKSVMDQVDFLTFYIPAYTVFIVAFFLTL GLLKPFPHGFRTSLQVLLAFLAISFDESINFIAPTNLAYLVMCLFSTLVFVLMMVMCV AYRDAV" mobile_element 3037480..3038159 /note="source:CACAO_M_S_E14456_F3_scaffold_2 997 1676" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3037688..3039491 /locus_tag="TCM_042931" /note="dbxref CacaoGD:Thecc1EG042931" mRNA join(3037688..3037775,3038183..3038568,3039226..3039491) /locus_tag="TCM_042931" /product="Ankyrin repeat protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042929t1" /inference="similar to AA sequence:TAIR:AT1G14480.2" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 3038211..3038543 /locus_tag="TCM_042931" /note="paralog of Thecc1EG042929t1" /codon_start=1 /product="Ankyrin repeat protein, putative" /protein_id="EOY18329.1" /db_xref="TAIR:AT1G14480.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B1Q4U3" /translation="MDESLKRAAREGNTVELYASIQRDGNVMRHIDQMEFVDTPLQIA AAQGCIDFAMETMILKPSFARKLNQEGFSPIHLAVENGHKELALHLMQNDKNLARLKG KRGETVMD" gene 3039701..3041326 /locus_tag="TCM_042932" /note="dbxref CacaoGD:Thecc1EG042932" mRNA join(3039701..3039948,3040028..3040400,3040546..3041326) /locus_tag="TCM_042932" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042917t1" /inference="similar to AA sequence:Phytozome:Glyma06g36910.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(3039836..3039948,3040028..3040400,3040546..3040692) /locus_tag="TCM_042932" /note="paralog of Thecc1EG042917t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18330.1" /db_xref="Phytozome:Glyma06g36910.1" /db_xref="TAIR:AT5G54610.1" /translation="MSLSVGSPDMDESLRRASQEGDIVEIYASIQRDGDVLRFARKLN PEDFTPIHLAEENGHEELALHLMENGATSNSPLHYAITREQNLGLLARFLEACPECFR DMTTTKQTALHIATRNNRLEALQLLRRILRKSDYCQDVMNQKDRNGDTALHIAAHNNQ PQADKFATNQAGSTALTVAHERNKTEIAVDRLSSPFRVCLWATLQKGMLA" mobile_element complement(3042720..3042759) /note="source:CACAO_on_E202_scaffold_1 22 61" /mobile_element_type="transposon:TIR/hAT" mobile_element 3044553..3044677 /note="source:CACAO_PIF_E278_scaffold_9 5305 5434" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 3044671..3047873 /locus_tag="TCM_042933" /note="dbxref CacaoGD:Thecc1EG042933" mRNA join(3044671..3045071,3045170..3045264,3046688..3046779, 3046915..3047873) /locus_tag="TCM_042933" /product="Ankyrin repeat-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042929t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS join(3044896..3045071,3045170..3045264,3046688..3046779, 3046915..3047445) /locus_tag="TCM_042933" /note="paralog of Thecc1EG042929t1" /codon_start=1 /product="Ankyrin repeat-containing protein" /protein_id="EOY18331.1" /translation="MDNVSSEDRNALLVVLGLLLTATYQASISPPGSVWQGGACSNSI PQYMKKYRAHGSRGMTALQVLLAFLAISFEEAVCLTVPTPLAFRVMTFNILKFVFPIT TSVYALSVLHIAARNNQPKADKRATNQAGSTTLAVANELNNIDSINILHGWRSARVLN FEHKIQKQMVKHVTKASEVIFQGVDSISSEDRNALLVILGVLLTATYQASISPPVSVW QGDGSSNSNSTVGHHGKLPGKSVMDQANFPFFYIPAYTVFIVAFFLTLGLLKPFPHGF RTSLQVLLAFLAISFDGSITS" mobile_element 3050396..3050926 /note="source:CACAO_M_E73089_F74_scaffold_10 4855 5385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3050450..3053041) /note="source:INTACT796_F74_scaffold_10-int 1 2592" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3053127..3053752 /locus_tag="TCM_042935" /note="dbxref CacaoGD:Thecc1EG042935" mRNA 3053127..3053752 /locus_tag="TCM_042935" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042917t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 3053263..3053583 /locus_tag="TCM_042935" /note="paralog of Thecc1EG042917t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18332.1" /translation="MSLSVGSPDMDECLRKAAQKGDIVEIYASIQRDGDIFRHIGEME FVDTPLHIAAPRGWIDLAMEIMIFKPSFAKKLNPKGFTPIHLAMENGHEDLALHPIRL CTVQ" mobile_element complement(3055089..3055807) /note="source:INTACT1608F_F65_scaffold_10-int 2989 3759" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3058422..3059817 /locus_tag="TCM_042936" /note="dbxref CacaoGD:Thecc1EG042936" mRNA join(3058422..3058672,3058792..3059178,3059456..3059817) /locus_tag="TCM_042936" /product="Ankyrin repeat-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042929t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc443t21" CDS join(3058496..3058672,3058792..3059178,3059456..3059494) /locus_tag="TCM_042936" /note="paralog of Thecc1EG042929t1" /codon_start=1 /product="Ankyrin repeat-containing protein" /protein_id="EOY18333.1" /translation="MTTANQTALHIATENNRLGALYLLCRMLRKSDDFQDVVNLKDSN GDTAVHIAARKNQPQILKLLLKCKADKFATNQVGLTVLAVADELDYKESKSILPGWLG ARASSFQYVIRKQMVKHVTKASKVIFQGMDSISSEDRNTLLVILGTLLTATFQASINP PRSVLQDDGSPNSKSTVNEGRGRLVMEEDAGYSLVLLHCK" gene 3063795..3070937 /locus_tag="TCM_042937" /note="dbxref CacaoGD:Thecc1EG042937" mRNA join(3063795..3064949,3065085..3065729,3068894..3068960, 3070841..3070937) /locus_tag="TCM_042937" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042929t1" /inference="similar to AA sequence:TAIR:AT4G10720.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS join(3064368..3064949,3065085..3065729,3068894..3068960, 3070841..3070851) /locus_tag="TCM_042937" /note="paralog of Thecc1EG042929t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18334.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDERLRRAALEGNIVELYASIQRDGDVLRKVNEMQFIDTPLHIA AAEGCIDFAMEIMILMPSFARKLNQEGLSPIHLAVEKGHKELALHLMENDKNLVRVKG KQGETPLHHAITREQNLDLLARFLEACPECVQDMTTTNQTALHIATGNNRLEALELLC LRLRKSDYCEDVVNQKDRNGDTALHIAVRNNQPKMLKLLLKCKADKLASNQAGLTVLA VAHELNNRESINILRGWRSPRVLSFQYKMRKQIIKPVTKASEVIFKGMDSISSEDRNA LLVILGLLLTATYQASISPPGSVWQGDRSSNSDSTVGYFEKLPGKSVMGEVDFLLFYI PAYTVFIVTFFLTLGLLKPFPRGFRTALQVLLAFLAISFDKSITFIAPSYLVFQVIST FSVLVFILMMFMCIAYRSNIFFPRTNFRFLLFQMAENIFGLT" mobile_element complement(3069948..3070138) /note="source:INTACT784_F331_scaffold_5-int 1003 1194" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3070404..3070836) /note="source:scaffold_2_CACTA_0267 821 1254" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3070837..3070911 /note="source:INTACT228_F18_scaffold_4-int 4547 5035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3071191..3071255) /note="source:CACAO_M_S_E32590_F18_scaffold_4 14249 14311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3071285..3072371 /note="source:MITE_hAT_12 2 1076" /mobile_element_type="transposon:TIR/MITE" gene 3072892..3076575 /locus_tag="TCM_042938" /note="dbxref CacaoGD:Thecc1EG042938" mRNA join(3072892..3073092,3074357..3075518,3075610..3076575) /locus_tag="TCM_042938" /product="Ankyrin repeat family protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G14500.1.2" /inference="similar to AA sequence:Phytozome:Glyma04g06200.1" /note="quality class is strong, express is strong, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc816t1" gene 3073283..3112590 /locus_tag="TCM_042939" /note="dbxref CacaoGD:Thecc1EG042939" mRNA join(3073283..3073351,3108550..3108580,3111209..3111760, 3111853..3112590) /locus_tag="TCM_042939" /product="Ankyrin repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G14480.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042924t1" /inference="similar to AA sequence:TAIR:AT4G10720.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc1647t5" CDS join(3073341..3073351,3108550..3108580,3111209..3111760, 3111853..3112440) /locus_tag="TCM_042939" /note="paralog of Thecc1EG042924t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18336.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDERLMRAAQSGNIDALYDLIEDDADVLRRIDEMEFVDTPLHIA AAAGHTDFAMEVMNLKPSFARNLNQGGFSPLHLASQYAKKKMVDDLLSVDKDLVRVKG REGYTPLHCAAREGDVPLLSKFLEECPNCIFDLTIRKETALHFAAQNNNFQAFKAILD RIQETDKYHDIEKRRMLNLQDKDGNTVLHIAASNNQTQMIKLLIESKKVDSNMVNQSG FTALHVLQEQPVVDRESVNILIRAQHPASRFRRASNFNKLTRDIEEMKLDTINALLVV FALILAMTYQALLSPPGGVLQADAGSDSDHAGKSVIKPVMFIIFYVSNSVAFIMAWIL TMALLSVVGKRIVFTVFSLYLLMCLCYGAALGVLEPIAFSGWGSWIAAVITNVLFFYV W" CDS join(3074919..3075518,3075610..3076485) /locus_tag="TCM_042938" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY18335.1" /db_xref="Phytozome:Glyma04g06200.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDPRLREAAQTGDFNYFYSLIEENASVLNDIDTESFAETPLHVA ASAGQIAFAVEMMNLKPSFARTLNQAGFSPIHLALQNKKTLFVHRLLEMDKDLVRVKG REGKTPFHYAAELGEPEELLNDFLEACPECIEDVTVHGETALHIALKCNKLKEFKSLV RWIRGSCHKDAKLWEERILNWKDEQGNTVLHIAALENQPEAVRLLVKCRDVVDVNAKN SENLTALEYISKCDENDESTENQRPVPNRSEITKILRAATPRMHPFMAILDFDEELML PYVKRVITHIARRRENISNGMRNALLVVITLVITATYQSSLSPPGGVWQGDNSNTSSK SNYASINTSNSSTLAGEPHGPGTTVMQKNTFVVFWTYNTLTLLTTLGLTAFLLPGGSI ALLLLVPLSLLCSSYMLSMSILSPTPFWSKVNTILSIVFIMLLLLPYPRLFNERRRAQ MKSELSPRAVLKSKKFYIKIFFFLVAALCFTVIMLQNWLHS" mobile_element complement(3078836..3079696) /note="source:scaffold_4_CACTA_0511 12911 13743" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3081462..3081896 /note="source:INTACT228_F18_scaffold_4-int 4547 4978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3081897..3081946) /note="source:scaffold_2_CACTA_0267 783 1254" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3082276..3082969) /note="source:MITE_hAT_5 428 1095" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(3082970..3085562) /note="source:INTACT577_F74_scaffold_10-int 1 2593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3085563..3085920) /note="source:CACAO_on_E202_scaffold_1 10 398" /mobile_element_type="transposon:TIR/hAT" gene 3087651..3091772 /locus_tag="TCM_042942" /note="dbxref CacaoGD:Thecc1EG042942" mRNA join(3087651..3088612,3088743..3089049,3089161..3089282, 3090929..3091033,3091129..3091772) /locus_tag="TCM_042942" /product="Ankyrin repeat-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042929t1" /inference="similar to AA sequence:TAIR:AT4G10720.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8634t7" CDS join(3088031..3088612,3088743..3089049,3089161..3089282, 3090929..3091033,3091129..3091512) /locus_tag="TCM_042942" /note="paralog of Thecc1EG042929t1" /codon_start=1 /product="Ankyrin repeat-containing protein" /protein_id="EOY18337.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MYESLSRAAHEGNIVELYASIRRDGDVLRKIDEMQFIDTPLHIA AAEGCIDFAMEIMILMPSFARKLNQEGFSPIHVAVEKGHKELALHLIENDKNLVRVKG KQGETPLHYAIPREQNFDLLARFLEACPESIRDMTTTNQTALHIATRHDRLEALDLLC QMLRRSDYCEDVVNQKDRNGDTVLHIAVRNNQPKMLRVLLKCKADTLATNPAGLTALD VAHELNNRESINILRGWSNAGGLNFQYKMRKQIFKLVTKASEVIFQGMDNVSSEDRNA LLVVLGLLLTATYQASISPPAYTVFIVAFFLTLGLLKPFPHGFRTALQVLLAFLAISF DEAGSGQYVDLEKRRILNLQDKGGNTVLHIAASKRQHQMIKLLIESKKVDRNTVNQTG FTALHVLQVQAPVDSESVNTLNRAEEEVQAPSKFRRVRYFAKFEREIEEMKPDTINAL LVVFALILGMSYQAVFSPPGGVLKADAGSSTKDAGKAVISPSVFVLFYT" mobile_element complement(3090648..3090780) /note="source:CACAO_M_S_E66867_F2_scaffold_6 664 805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3092688..3093175 /note="source:CACAO_MITE_S153_scaffold_6 2 505" /mobile_element_type="transposon:TIR/MITE" gene 3096840..3101512 /locus_tag="TCM_042943" /note="dbxref CacaoGD:Thecc1EG042943" mRNA join(3096840..3097536,3097989..3098295,3098407..3098567, 3099462..3100046,3100148..3101512) /locus_tag="TCM_042943" /product="Ankyrin repeat-containing protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G14480.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042947t1" /inference="similar to AA sequence:Phytozome:Glyma06g36110.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(3096961..3097536,3097989..3098295,3098407..3098567, 3099462..3100046,3100148..3100906) /locus_tag="TCM_042943" /note="paralog of Thecc1EG042947t1" /codon_start=1 /product="Ankyrin repeat-containing protein" /protein_id="EOY18338.1" /db_xref="Phytozome:Glyma06g36110.1" /db_xref="TAIR:AT4G10720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDESLRSAALSGNIDALYALIEEDADVLRRIDEMEFVDTPLHIA AAAGHTEFARELMNLKPSFARKLNQSGSSPLHLALQNKQEKMVDDLLSIDKNLVRVKG REGYTPLHHAAREGNDSLLTKFLEKCPSSILDVTVRNETALHIAAKYNKLEALKAILE WLPISFHGSIINSEDKDGNTVLHIAASNNQTQMIKLLIQSKRVLKGKVNQSGSTALQV LEAQARDDSRESVNILKRAKVPAYIIIEKMFSPKIRGYIEIMTEIREMKTETVNTLLV VLSLILTMTYQAVLSPPIVVAKRIIILLVPLYVIMACCYSVAHAIIAPNPYVYFGASA VCGIILSFSIFYYLGVKANLIPFHAKGMEDGFLRDIDQMEFVDTPLHVAAAAGRAEFA LELLDLKPSLATKLNQEGLGPMHLALQNEHAETVLSLLRFDKNLVRVEGKNGYTPFLY AVTKGDSPVMKGDRPVLNEFLKDCPQCFHDVTNRNETDLHVAVQNNSFEAFQVLKLWL WRLDCSVRQIKRILNFKNRDGDTALHIAASKNQPKIVRLLTDYGIMNMKATNWKNLTA LGILQGQNQEDSGKCKEILLSANRAIFFGAIALIQLISQLKYNIKTMSGDKNNALLVV TVLILTATYQAALSPPGGVFQANSEPKNTTSQFQIPHSFHNISSSITNKIFKMDRSAA GSSVLHTAPFLFFFIPNIMAFGISFLQTCVVLISILPAVLSNALVLSLSMLVVCLLIS SVRIISPNSLSVVVMYETVDLLVGLPVLVMFLTIFLRLVISLVISRLWRMAWKEN" mobile_element complement(3099406..3099516) /note="source:MITE_Unknown_5_4 899 1009" /mobile_element_type="transposon:TIR/MITE" mobile_element 3101921..3102286 /note="source:scaffold_10_CACTA_0130 6216 6574" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3102307..3102357 /note="source:scaffold_10_CACTA_0130 6712 6762" /mobile_element_type="transposon:TIR/CACTA" gene 3103392..3104872 /locus_tag="TCM_042944" /note="dbxref CacaoGD:Thecc1EG042944" mRNA join(3103392..3104182,3104274..3104872) /locus_tag="TCM_042944" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042924t1" /inference="similar to AA sequence:TAIR:AT4G10720.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10934t00001" CDS join(3103589..3104182,3104274..3104834) /locus_tag="TCM_042944" /note="paralog of Thecc1EG042924t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18339.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDERLSGAALSGNIDALYDLIKDDADVLRRIDEMEFVDTPLHIA AAAGHTEFAMELMNLKPSFARKLNQRGFSPIYLALQEKQEKMVDDLLSIDKDLVRVKG REGYTPLHHAVREGNVPLLSKFLENCPNSIFDLTIRKETALHIAAQNNNLEAFEAILF WIHKTHEYDYMEKRRILNLQDKDGNTVLHMAASNNQTQMMKLLMESRMVKGDKVNQSG FTALRVSQEQARVDSAESVNILKPPKEYRMDFGQVSYDISKMNLDTINALLVVFALIV TITYQALLSPPGGIEAAGKSVIKPNVFILFYTLNIAAFGIAWFSAVFIIKTVANKIAG YVVILFSLICLCYIVAHFIIAPTLHVGGVAFDAAFIIGSILAIMVHVSIA" gene 3106692..3107318 /locus_tag="TCM_042945" /note="dbxref CacaoGD:Thecc1EG042945" mRNA 3106692..3107318 /locus_tag="TCM_042945" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042947t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 3106736..3107026 /locus_tag="TCM_042945" /note="paralog of Thecc1EG042947t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18340.1" /translation="MTEESFSITIGRPFSMQERVRNAAKEGHVEALYELIREKADFLK DIDQMEFVDTPLHVAAAAGRTGFCIGVDGLKAITCYEAEPRQVEPHAPCVAE" gene 3113370..3115403 /locus_tag="TCM_042946" /note="dbxref CacaoGD:Thecc1EG042946" mRNA join(3113370..3114301,3114395..3115403) /locus_tag="TCM_042946" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042947t1" /inference="similar to AA sequence:Phytozome:Glyma06g36910.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10459t1" CDS join(3113657..3114301,3114395..3115120) /locus_tag="TCM_042946" /note="paralog of Thecc1EG042947t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18341.1" /db_xref="Phytozome:Glyma06g36910.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B1Q4U3" /translation="MAESAIISIRPCTTSEEKVMDAARSGDIGTLYQLIGEDVNVFKR MNKRRFFDTPLHIASAAGKTEFAMELMYLNPSFATKLNKDGLSPLHLALQEGQTELAL SLLTINKNLVSVKGKMGYTPIHYLAMKETDRNRLTKFLNACPECIHHVTSRDETALHV AASNNNIKALEVLLRWLRKTSNCSMLQKERVLNHPNRDGDTVLHVAVSNKPPDPEMVR LLTSFRIKMKATNSRGSTALDILKCCRTQEDNINIKKCVDILGHDQCLNACRKGLWYF LELLSQWGYEIKHMSNDRGNALLVVTVLILTATYQATLSPPGGVLSLDADTNNKNVSA LQIYFDNKNTTRVETKANYTAGSSVLQTIPFLWFFIPNLVAFAISFLLTCFVLLTLVS GLFSFTLILSLSMLLFCLLVSAVMIISPNNQSSNILLFCVYIIVYVTYCAIAPVLIPK IRRMFR" gene 3115450..3119784 /locus_tag="TCM_042947" /note="dbxref CacaoGD:Thecc1EG042947" mRNA join(3115450..3115609,3118052..3118677,3118787..3119784) /locus_tag="TCM_042947" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042943t1" /inference="similar to AA sequence:Phytozome:Glyma06g37040.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS join(3118087..3118677,3118787..3119527) /locus_tag="TCM_042947" /note="paralog of Thecc1EG042943t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18342.1" /db_xref="Phytozome:Glyma06g37040.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B1Q4U3" /translation="MQERVRNAANEGDIEALYELIREKADFLRDIDQMEFVDTPLHVA AAAGRTEFALELLDLKPSLATKLNQDGLSPMHLALQNKYAETVLSLLRFDKNLVRVKG KNGYTPFHYAVMNGDRPVLNEFLKDCPQWIHDVTNRNETGLHVAVQNNSFEAFQVLML WLWRSDCSVREIKRILNFKNRDGDTALHIAASKNQPKIVRLLTEYGIMNMKATNSKNL TGQNQHDRGKCKEILLSAYRAIFVGAIALIQLISQLKYNIKTMSGDNNNAVLVVTVLI LTATYQAALSPPGGVFQANSEPKNTTAHLQIPHSFRNITSSITNKIFKKHPSAAGSSV LNTVPFLFFFIPNIMAFGISFLLTCAVLISILPVVLSTALVLSLSMLVVCLLISSVRI ISPNSLSVVVMYETVDLLVGLPVLVMFLTIFLRLVIRLVISRLWRMAWKEN" gene complement(3119787..3122125) /locus_tag="TCM_042948" /note="dbxref CacaoGD:Thecc1EG042948" mRNA complement(join(3119787..3120286,3120739..3121102, 3121996..3122034,3122122..3122125)) /locus_tag="TCM_042948" /product="Ribosomal protein L23AB isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025041001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041912t2" /inference="similar to AA sequence:Phytozome:Glyma18g52310.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc393t6" mRNA complement(join(3119840..3120286,3120308..3120336, 3120747..3121102,3121996..3122028)) /locus_tag="TCM_042948" /product="Ribosomal protein L23AB isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025041001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041912t2" /inference="similar to AA sequence:Phytozome:Glyma18g52310.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc393t12; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc393t6; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10354t4" CDS complement(join(3120202..3120286,3120739..3121102, 3121996..3122011)) /locus_tag="TCM_042948" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041912t2" /codon_start=1 /product="Ribosomal protein L23AB isoform 1" /protein_id="EOY18343.1" /db_xref="Phytozome:Glyma18g52310.1" /db_xref="TAIR:AT3G55280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LD46" /translation="MAPAKVDSKKKTDPKAQAVKAAKAVKSGTTFKKKAKKIRTKVTF HRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII" CDS complement(join(3120313..3120336,3120747..3121102, 3121996..3122011)) /locus_tag="TCM_042948" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041912t2" /codon_start=1 /product="Ribosomal protein L23AB isoform 2" /protein_id="EOY18344.1" /db_xref="Phytozome:Glyma18g52310.1" /db_xref="TAIR:AT3G55280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LD46" /translation="MAPAKVDSKKKTDPKAQAVKAAKAVKSGTTFKKKAKKIRTKVTF HRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA DKKKIKDAVKKMYDIQTKKVNTIHNCYES" mobile_element complement(3123961..3125963) /note="source:scaffold_5_CACTA_0615 181 2253" /mobile_element_type="transposon:TIR/CACTA" gene complement(3126308..3128365) /locus_tag="TCM_042949" /note="dbxref CacaoGD:Thecc1EG042949" mRNA complement(3126308..3128365) /locus_tag="TCM_042949" /product="3-ketoacyl-CoA synthase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21940.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042988t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21940.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc53t7; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc53t5_C1" CDS complement(3126889..3128364) /locus_tag="TCM_042949" /note="paralog of Thecc1EG042988t1" /codon_start=1 /product="3-ketoacyl-CoA synthase" /protein_id="EOY18345.1" /db_xref="Phytozome:POPTR_0010s21940.1" /db_xref="TAIR:AT5G04530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTX8" /translation="MPNSISLSFYLRRKRAEKTPHSQHTLCLSMELVMAICLLFLCSL ISYICNMVFQKRNQCCYMLGYECYKASDDRKLDTEACVRVVMRNKNLGLEQYRFLLKT IVSSGLGEETYGPRNVLDGREESPTEKDAHTEMDEIMFDTLDSLFAKTGVSPSEIDIL VVDVSLFSPSPSLTARIVNRYKMRDDIKSFNLSGMGCSASMVAIDLVQRLFKTYKNQF AIVVSTESIGSHWYCGKEKSMMLSNCLFRSGGSSILLTNKRALKDRAIFKLKCAVRTN IGYDDEAYGCCMQLEDEEGYQGFLLTKSLTKAAAKAFTMNLEILVPQILPVTELLRYA ISFLGSKRIKGQTPDAARALSFNFNLKSGIEHFCLHPGGRAVIDGLGKSLRLSEYDLE PTRMALYRFGNTSAGGLWYVLSYMEAKKRLKKGDRILMISLGAGFMCNNCVWEVMKDG LEDTRVWEDCVDSYPRKNLVNPFTEKYSWINDECLNFVRLD" gene complement(3131770..3133682) /locus_tag="TCM_042950" /note="dbxref CacaoGD:Thecc1EG042950" mRNA complement(join(3131770..3132203,3132957..3133682)) /locus_tag="TCM_042950" /product="Translation initiation factor IF-2, putative" /inference="alignment:exonerate- protein:2:ricco:28180.m000380" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042954t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04980.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc11298t1_C1" CDS complement(3132973..3133590) /locus_tag="TCM_042950" /note="paralog of Thecc1EG042954t1" /codon_start=1 /product="Translation initiation factor IF-2, putative" /protein_id="EOY18346.1" /db_xref="Phytozome:POPTR_0008s04980.1" /translation="MFLSSNDTTETKLSLKLLIDKRANKVLFAEAGKEFVDFLSYVLS LPVGTFIRLLKSQNMVACMDNVYQSLENLNEAYVQPNQHKNFLLKPDMPYVVTSVPPL LPDTSQDPAQRKFYTCANNHRYVIDILNAICPPCKSSMPSEVTFVGRNSDMAGSTTEG GIEKGLATYMVMDDLTITPMSMISGVAMLNKCNVKDFSALEEKMV" mobile_element complement(3133844..3134085) /note="source:CACAO_M_S_E89247_F225_scaffold_8 4070 4348" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3134932..3135205) /note="source:CACAO_M_S_E89247_F225_scaffold_8 4063 4337" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3138625..3139828) /locus_tag="TCM_042952" /note="dbxref CacaoGD:Thecc1EG042952" mRNA complement(join(3138625..3138974,3139203..3139321, 3139467..3139828)) /locus_tag="TCM_042952" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1852t1" CDS complement(join(3138882..3138974,3139203..3139321, 3139467..3139647)) /locus_tag="TCM_042952" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18347.1" /translation="MPAAFLFEASYKLGLFTRSLEMNKIDLICFGHSTSLWPFAINLP CAKGSETAEGLDAVQGGTRIGLSSNKSIDHALNCVTGIFLTSILGLKQHLAFLTLEAV QLLKASLQSKTVLTDVFFGKKGNVSHAY" gene complement(3138951..3145765) /locus_tag="TCM_042953" /note="dbxref CacaoGD:Thecc1EG042953" mRNA complement(join(3138951..3138974,3139076..3139097, 3143924..3144085,3144242..3144524,3144697..3144770, 3145521..3145765)) /locus_tag="TCM_042953" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene26726" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042954t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage" CDS complement(join(3139077..3139097,3143924..3144085, 3144242..3144524,3144697..3144734)) /locus_tag="TCM_042953" /note="paralog of Thecc1EG042954t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18348.1" /translation="MPAPFDSRPVKRSTVPVMAATTVSLKLLVDQESHRALFAEAGKD VDFLFNILSLPLGTVIRLLNKQGMVGCLGDLYDSIENLADNYMQPTANKDTLLKPMVF NIAANPNNTDSSSAERGYVKGVVTYMIMDDLTVRPTSTTSSITSLNKFNVKDVAVLEE KSQNGHG" gene complement(3141134..3142364) /locus_tag="TCM_042954" /note="dbxref CacaoGD:Thecc1EG042954" mRNA complement(join(3141134..3141507,3141646..3142364)) /locus_tag="TCM_042954" /product="DNA polymerase zeta catalytic subunit, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400046785" /inference="similar to AA sequence:Phytozome:GSVIVT01016636001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17122t1" CDS complement(join(3141370..3141507,3141646..3142272)) /locus_tag="TCM_042954" /codon_start=1 /product="DNA polymerase zeta catalytic subunit, putative" /protein_id="EOY18349.1" /db_xref="Phytozome:GSVIVT01016636001" /db_xref="TAIR:AT5G01150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TM06" /translation="MAPTGTVSLKLLVESTDQRVLFAEAGKDFVDFLFSILSLPVGAV TGLLTKQDIVGCLGNLYVSLESLSETYIQPTANKDTLLKPMVSNYTANVPRLLPNLQS STSTINLYRCNGGYSTCRTYIANDSKSICPTCDSVMSHKATFVNPPERAASSSDEGGY VKGVVTYMIMDDLVVRPMSTISCITLLNKFSVKDVGVLEEKAIDFGMDEGVKLLKASM QSKSVLTDVFLGKKVGQREVTNPLAVYIRDLGNAHE" gene complement(3145812..3147785) /locus_tag="TCM_042955" /note="dbxref CacaoGD:Thecc1EG042955" mRNA complement(join(3145812..3146281,3146433..3146635, 3146724..3147041,3147243..3147785)) /locus_tag="TCM_042955" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016636001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042954t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1848t1" CDS complement(join(3146195..3146281,3146433..3146558)) /locus_tag="TCM_042955" /note="paralog of Thecc1EG042954t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18350.1" /translation="MIMDDLIVRPMSTISSITLLNKFKIKDVGVLEERVIDMGMDEGV KLLKASMQSKAVLTDVFLEKMVAKSF" gene complement(3147676..3154268) /locus_tag="TCM_042956" /note="dbxref CacaoGD:Thecc1EG042956" mRNA complement(join(3147676..3147798,3148412..3148803, 3150041..3150223,3150855..3153710,3153946..3154268)) /locus_tag="TCM_042956" /product="Mitogen-activated protein kinase phosphatase 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040507" /inference="similar to AA sequence:Phytozome:POPTR_0010s21780.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1860t1" CDS complement(join(3150167..3150223,3150855..3153347)) /locus_tag="TCM_042956" /codon_start=1 /product="Mitogen-activated protein kinase phosphatase 1" /protein_id="EOY18351.1" /db_xref="Phytozome:POPTR_0010s21780.1" /db_xref="TAIR:AT3G55270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNA1" /translation="MVGKEDAPVNPRAPSCQLSGSRKMFWRSASWSSSRTSGQIPETE EKDLGADPNGNDGTNNGQTRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWP KAGSDDIGEWPQPPTPSGNKSGERLKLDLSSIQRNNDKNGGLLKRDKIAFFDKECSKV AEHIYLGGDAVARDREILKQNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDIT SILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAAR GIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPS VLDSRGAFIVQIPSAIYIWIGKNCESIMERDARGAVCQIVRYERVQGPIIMIKEGEEQ AYFWDAFSNLLPLMDKPGNKVEVGESAVKICGERKVDAYNVDFEIFQKAIKGGFVPPF ASSENEHETHLPARESSWSMLRRKFASGIMKEFVSAPKILLSRVYSDSMMIVHASSPS STSSSSSSSSSPPYLSPDSISSDSSTCSKYFSESSLDSPSAISRSLPVSSTLSNLSNL SLVPSQTSSRPKSNSSEVVSVNLTSQPCSQTASSPQKKVSPSLAERRGSLSKSLKLPV MSDNVRVTNDPPCFLVKQDGVRINENTNSSCESDIEIVFDSKRGVRNGGDRLIQGSNL KISPGRIANADSRDKQSTFVNSCFEPWRNYPSQDGFGSAVPNRMEERIPACLGVIQPL ICRWPSIERMTKFNRSDLDSKSAFAIFSPTTAVGKSEDRILYFWVGRSFHHDKSLIQF SSRVLGDREEIDWNQVCYHVLTQMGLPKDTPVKIVKEDEEPTEFLALLRML" gene complement(3156258..3164265) /locus_tag="TCM_042957" /note="dbxref CacaoGD:Thecc1EG042957" mRNA complement(join(3156258..3156586,3156896..3157094, 3158115..3158365,3158453..3158512,3158859..3158887, 3161776..3161898,3162045..3162115,3162216..3162327, 3162592..3162627,3163148..3163231,3163326..3163967)) /locus_tag="TCM_042957" /product="Beta-hexosaminidase 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016639001" /inference="similar to AA sequence:TAIR:AT3G55260.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc89t6_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7813t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4122t2" mRNA complement(join(3156481..3156586,3156896..3157094, 3158115..3158365,3158453..3158512,3158859..3158957, 3159141..3159174,3159826..3159885,3160635..3160735, 3161128..3161176,3161410..3161426,3161768..3161898, 3162045..3162115,3162216..3162327,3162592..3162627, 3163148..3163231,3163326..3164265)) /locus_tag="TCM_042957" /product="Beta-hexosaminidase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016639001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024174t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016639001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7813t2" mRNA complement(join(3156625..3157094,3158115..3158172, 3159836..3159885,3160635..3160735,3161128..3161176, 3161410..3161426,3161768..3161898,3162045..3162115, 3162216..3162327,3162592..3162627,3163148..3163231, 3163326..3164265)) /locus_tag="TCM_042957" /product="Beta-hexosaminidase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016639001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024174t4" /inference="similar to AA sequence:TAIR:AT3G55260.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b041473t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7813t2" CDS complement(join(3156919..3157094,3158115..3158365, 3158453..3158512,3158859..3158887,3161776..3161898, 3162045..3162115,3162216..3162327,3162592..3162627, 3163148..3163231,3163326..3163685)) /locus_tag="TCM_042957" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Beta-hexosaminidase 1 isoform 3" /protein_id="EOY18354.1" /db_xref="TAIR:AT3G55260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3C5" /translation="MLPFSQKPHSKFSFFIFSFCVCQLVVLNSGFELDESLTYIWPLP SEFKSGNETLTVDPTLSLSVLGKGGDLKILREGFERYKKIIFKHVSGVSIFEKWIGIR SVYDISELRIIVNSDSEELQLGVDESYTLSVAKNDGKSIVGEATIEANTVYGALRGLE TFSQLCAFDYGTKSVQVYKAPWYIQDKPRFAYRGLLLDTSRHYLPIDVIKQIIESMSY AKLNVLHWHIIDEQSFPLEVPTYPDLWKGSYTKWERYTVEDASEISKGWTPVNWEETF NAFASNLNPQTVVHNWLGPGVCPKAVAKGFRCIFSNQGVWYLDHLDVPWDQVYNAEPL EGINNVSEQNLVLGGEVCMWCEMADTSNVQQTIWPRAAAAAERLWSKREPVSARNITL TALPRYQYFRCLLNRRGVQAAPATNKYARSPPNGPGSCYEQ" CDS complement(join(3156919..3157094,3158115..3158172, 3159836..3159885,3160635..3160735,3161128..3161176, 3161410..3161426,3161768..3161898,3162045..3162115, 3162216..3162327,3162592..3162627,3163148..3163231, 3163326..3163685)) /locus_tag="TCM_042957" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG024174t4" /codon_start=1 /product="Beta-hexosaminidase 1 isoform 2" /protein_id="EOY18353.1" /db_xref="TAIR:AT3G55260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3C5" /translation="MLPFSQKPHSKFSFFIFSFCVCQLVVLNSGFELDESLTYIWPLP SEFKSGNETLTVDPTLSLSVLGKGGDLKILREGFERYKKIIFKHVSGVSIFEKWIGIR SVYDISELRIIVNSDSEELQLGVDESYTLSVAKNDGKSIVGEATIEANTVYGALRGLE TFSQLCAFDYGTKSVQVYKAPWYIQDKPRFAYRGLLLDTSRHYLPIDVIKQIIESMSY AKLNVLHWHIIDEQSFPLEVPTYPDLWKGSYTKWERYTVEDASEIVSFAKMRGIHVMA EVDVPGHAESWGAGYPDLWPTSSCREPLDVSKNFTFDLISGILSDIRKIFPFELFHLG GDEMADTSNVQQTIWPRAAAAAERLWSKREPVSARNITLTALPRYQYFRCLLNRRGVQ AAPATNKYARSPPNGPGSCYEQ" CDS complement(join(3156919..3157094,3158115..3158365, 3158453..3158512,3158859..3158957,3159141..3159174, 3159826..3159885,3160635..3160735,3161128..3161176, 3161410..3161426,3161768..3161898,3162045..3162115, 3162216..3162327,3162592..3162627,3163148..3163231, 3163326..3163685)) /locus_tag="TCM_042957" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG024174t1" /codon_start=1 /product="Beta-hexosaminidase 1 isoform 1" /protein_id="EOY18352.1" /db_xref="Phytozome:GSVIVT01016639001" /db_xref="TAIR:AT3G55260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3C5" /translation="MLPFSQKPHSKFSFFIFSFCVCQLVVLNSGFELDESLTYIWPLP SEFKSGNETLTVDPTLSLSVLGKGGDLKILREGFERYKKIIFKHVSGVSIFEKWIGIR SVYDISELRIIVNSDSEELQLGVDESYTLSVAKNDGKSIVGEATIEANTVYGALRGLE TFSQLCAFDYGTKSVQVYKAPWYIQDKPRFAYRGLLLDTSRHYLPIDVIKQIIESMSY AKLNVLHWHIIDEQSFPLEVPTYPDLWKGSYTKWERYTVEDASEIVSFAKMRGIHVMA EVDVPGHAESWGAGYPDLWPTSSCREPLDVSKNFTFDLISGILSDIRKIFPFELFHLG GDEVNTDCWTSTPHIKQWLNNRNMTAKDAYQYFVLKAQEMAISKGWTPVNWEETFNAF ASNLNPQTVVHNWLGPGVCPKAVAKGFRCIFSNQGVWYLDHLDVPWDQVYNAEPLEGI NNVSEQNLVLGGEVCMWCEMADTSNVQQTIWPRAAAAAERLWSKREPVSARNITLTAL PRYQYFRCLLNRRGVQAAPATNKYARSPPNGPGSCYEQ" misc_feature complement(join(3159856..3159885,3159968..3160665)) /locus_tag="TCM_042957" /note="Gene fragment of Thecc1EG042957t1; dbxref gnl|CacaoGD|Thecc1EG042957t1; quality class is mediumpartial-partof is thecc1eg042957t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7952t7_C1; dbxref CacaoGD:Thecc1EG042959t1" mobile_element 3164395..3164449 /note="source:CACAO_M_S_E18487_F233_scaffold_3 1308 1357" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3167679..3173224 /locus_tag="TCM_042961" /note="dbxref CacaoGD:Thecc1EG042961" mRNA join(3167679..3168344,3170056..3170165,3170259..3170504, 3171460..3171540,3171661..3171894,3172398..3173161) /locus_tag="TCM_042961" /product="Cation efflux family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28067.m000106" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033521t1" /inference="similar to AA sequence:ricco:28067.m000106" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06968t00001" mRNA join(3167824..3168344,3170056..3170165,3170259..3170504, 3171460..3171540,3171661..3172423) /locus_tag="TCM_042961" /product="Cation efflux family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:28067.m000106" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033521t1" /inference="similar to AA sequence:ricco:28067.m000106" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc270t8; inference alignment:Newbler:10:TSA:cgbaB_g06968t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc106t10_C2" CDS join(3168179..3168344,3170056..3170165,3170259..3170504, 3171460..3171540,3171661..3171894,3172398..3172748) /locus_tag="TCM_042961" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28067.m000106; paralog of Thecc1EG033521t1" /codon_start=1 /product="Cation efflux family protein isoform 1" /protein_id="EOY18355.1" /db_xref="TAIR:AT2G39450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80632" /translation="MGEPEARESDEELCLLSHQSNGDRSWRLNFDGFQLSPEHKDKKP PRSLHDCLGVSGPEDNVAEYYQQQVEMLEGFNEMDALAERGFIPGMSKEEREKLARSE TLAIRISNIANMVLFAAKVYASVRSGSLAIIASTLDSLLDLLSGFILWFTAFSMSTPN PYQYPIGKKRMQPLGILVFASVMATLGLQIILESVQTMISDEDEFNLTKEQERWVVVI MLGVTVVKLLLVFYCRTFTNEIVKAYAQDHFFDVITNIIGLVAALLANYIDDWIDPVG AIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKAIRHIDTVRAYTF GSHYFVEVDIVLPANMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHKPEHAQA HAL" CDS join(3168179..3168344,3170056..3170165,3170259..3170504, 3171460..3171540,3171661..3171990) /locus_tag="TCM_042961" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28067.m000106; paralog of Thecc1EG033521t1" /codon_start=1 /product="Cation efflux family protein isoform 3" /protein_id="EOY18357.1" /db_xref="TAIR:AT2G39450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80632" /translation="MGEPEARESDEELCLLSHQSNGDRSWRLNFDGFQLSPEHKDKKP PRSLHDCLGVSGPEDNVAEYYQQQVEMLEGFNEMDALAERGFIPGMSKEEREKLARSE TLAIRISNIANMVLFAAKVYASVRSGSLAIIASTLDSLLDLLSGFILWFTAFSMSTPN PYQYPIGKKRMQPLGILVFASVMATLGLQIILESVQTMISDEDEFNLTKEQERWVVVI MLGVTVVKLLLVFYCRTFTNEIVKAYAQDHFFDVITNIIGLVAALLANYIDDWIDPVG AIIVCKIFSPFPDPFFFQLFLVFWCWSLLCLLVA" mRNA join(3169594..3170165,3170259..3170504,3171460..3171540, 3171661..3171894,3172398..3173224) /locus_tag="TCM_042961" /product="Cation efflux family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28067.m000106" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033521t1" /inference="similar to AA sequence:Phytozome:Glyma18g52280.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b041474t1a2; inference alignment:Newbler:10:TSA:cgbaB_g06968t00001" CDS join(3170100..3170165,3170259..3170504,3171460..3171540, 3171661..3171894,3172398..3172748) /locus_tag="TCM_042961" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG033521t1" /codon_start=1 /product="Cation efflux family protein isoform 2" /protein_id="EOY18356.1" /db_xref="Phytozome:Glyma18g52280.1" /db_xref="TAIR:AT2G39450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80632" /translation="MLEGFNEMDALAERGFIPGMSKEEREKLARSETLAIRISNIANM VLFAAKVYASVRSGSLAIIASTLDSLLDLLSGFILWFTAFSMSTPNPYQYPIGKKRMQ PLGILVFASVMATLGLQIILESVQTMISDEDEFNLTKEQERWVVVIMLGVTVVKLLLV FYCRTFTNEIVKAYAQDHFFDVITNIIGLVAALLANYIDDWIDPVGAIILALYTIRTW SMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKAIRHIDTVRAYTFGSHYFVEVDIVL PANMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHKPEHAQAHAL" gene 3175152..3184196 /locus_tag="TCM_042964" /note="dbxref CacaoGD:Thecc1EG042964" mRNA join(3175152..3175745,3176915..3176963,3177403..3177604, 3178204..3178372,3178907..3178972,3179094..3179201, 3179379..3179486,3179582..3179647,3180244..3180304, 3180451..3180578,3180867..3180908,3181124..3181240, 3181520..3181571,3182190..3182328,3182470..3182893, 3182980..3184196) /locus_tag="TCM_042964" /product="Sulfate transporter 4.1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016641001" /inference="similar to AA sequence:Phytozome:Glyma02g10590.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:PASA:2:TSA:puevd3b041475t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1878t3" mRNA join(3175152..3175745,3176915..3176963,3177403..3177604, 3178204..3178372,3178907..3178972,3179094..3179201, 3179379..3179486,3179582..3179647,3180244..3180304, 3180451..3180578,3180867..3180908,3181124..3181240, 3181520..3181571,3182190..3182328,3182470..3182558, 3182817..3182893,3182980..3184196) /locus_tag="TCM_042964" /product="Sulfate transporter 4.1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016641001" /inference="similar to AA sequence:Phytozome:GSVIVT01016641001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1878t3" CDS join(3175284..3175745,3176915..3176963,3177403..3177604, 3178204..3178372,3178907..3178972,3179094..3179201, 3179379..3179486,3179582..3179647,3180244..3180304, 3180451..3180578,3180867..3180908,3181124..3181240, 3181520..3181571,3182190..3182328,3182470..3182558, 3182817..3182893,3182980..3183297) /locus_tag="TCM_042964" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Sulfate transporter 4.1 isoform 1" /protein_id="EOY18358.1" /db_xref="Phytozome:GSVIVT01016641001" /db_xref="TAIR:AT5G13550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FY46" /translation="MPAAHALIKRPPPPPLFLCAPPASVSQFYDAPLVRMEISYASPS AGDLTYSSSTSSGSSMPNRPVKIIPLQHPDTTSYGSSGGGSSSSSSSSSSSFWSNSLF SGWGSKIRQMTIVDWIGMCFPCFRWIRTYRWREYLQVDLMAGTTVGIMLVPQAMSYAK LAGLEPIYGLYSGFVPIFIYAIFGSSRQLAIGPVALVSLLVSNVLSGIADSSDALYTE LAILLALMVGILECIMGLLRLGWLIRFISHSVISGFTTASAIVIALSQAKYFLGYDIE RSSEIVPIIKSIISGADEFSWPPFVMGSIILIILQTMKHLGKSRKHLRFLRAMGPLTA VVLGTTFVKIYHPSSITLVGDIPQGLPSFSIPRSFKYAKSLIPTTLLITGVAILESVG IAKALAAKNGYELDSNQELFGLGVANIFGSFFSAYPTTGSFSRSAVNHESGAKSGLSG IVTGIIMGCALLFLTPLFEYIPQCALAAIVISAVISLVDYEEAIFLWRVDKKDFLLWT ITSTTTLFLGIEIGVLVGVGVSLAFVIHESANPHIAVLGRLPGTTVYRNIQQYPEAYT YNGIVIVRIDAPIYFANISYIKDRLREYEVVVDKSTRRGPEVERIYFVILEMAPVTYI DSSAVQALKDLHHEYKSRDIQIAISNPNREVLLTLSKSRAVELIGKEWYFVRVHDAVQ VCLQHVQSIKEASKTSDPSPEEKPSFFQRFLKQRGEDVLVASLESGSNSPSDSTHSDP QLEPLLFRKP" CDS join(3175284..3175745,3176915..3176963,3177403..3177604, 3178204..3178372,3178907..3178972,3179094..3179201, 3179379..3179486,3179582..3179647,3180244..3180304, 3180451..3180578,3180867..3180908,3181124..3181240, 3181520..3181571,3182190..3182328,3182470..3182632) /locus_tag="TCM_042964" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Sulfate transporter 4.1 isoform 3" /protein_id="EOY18360.1" /db_xref="Phytozome:Glyma02g10590.1" /db_xref="TAIR:AT5G13550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FY46" /translation="MPAAHALIKRPPPPPLFLCAPPASVSQFYDAPLVRMEISYASPS AGDLTYSSSTSSGSSMPNRPVKIIPLQHPDTTSYGSSGGGSSSSSSSSSSSFWSNSLF SGWGSKIRQMTIVDWIGMCFPCFRWIRTYRWREYLQVDLMAGTTVGIMLVPQAMSYAK LAGLEPIYGLYSGFVPIFIYAIFGSSRQLAIGPVALVSLLVSNVLSGIADSSDALYTE LAILLALMVGILECIMGLLRLGWLIRFISHSVISGFTTASAIVIALSQAKYFLGYDIE RSSEIVPIIKSIISGADEFSWPPFVMGSIILIILQTMKHLGKSRKHLRFLRAMGPLTA VVLGTTFVKIYHPSSITLVGDIPQGLPSFSIPRSFKYAKSLIPTTLLITGVAILESVG IAKALAAKNGYELDSNQELFGLGVANIFGSFFSAYPTTGSFSRSAVNHESGAKSGLSG IVTGIIMGCALLFLTPLFEYIPQCALAAIVISAVISLVDYEEAIFLWRVDKKDFLLWT ITSTTTLFLGIEIGVLVGVGVSLAFVIHESANPHIAVLGRLPGTTVYRNIQQYPEAYT YNGIVIVRIDAPIYFANISYIKDRLREYEVVVDKSTRRGPEVERIYFVILEMARKSYL YHDQCSSSPKMIILCPMPN" mRNA join(3175558..3176237,3176915..3176963,3177403..3177604, 3178204..3178372,3178907..3178972,3179094..3179201, 3179379..3179486,3179582..3179647,3180244..3180304, 3180451..3180578,3180867..3180908,3181124..3181240, 3181520..3181571,3182190..3182328,3182470..3182558, 3182817..3182893,3182980..3183598) /locus_tag="TCM_042964" /product="Sulfate transporter 4.1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016641001" /inference="similar to AA sequence:Phytozome:GSVIVT01016641001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9143t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1878t3" CDS join(3176918..3176963,3177403..3177604,3178204..3178372, 3178907..3178972,3179094..3179201,3179379..3179486, 3179582..3179647,3180244..3180304,3180451..3180578, 3180867..3180908,3181124..3181240,3181520..3181571, 3182190..3182328,3182470..3182558,3182817..3182893, 3182980..3183297) /locus_tag="TCM_042964" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Sulfate transporter 4.1 isoform 2" /protein_id="EOY18359.1" /db_xref="Phytozome:GSVIVT01016641001" /db_xref="TAIR:AT5G13550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FY46" /translation="MSYAKLAGLEPIYGLYSGFVPIFIYAIFGSSRQLAIGPVALVSL LVSNVLSGIADSSDALYTELAILLALMVGILECIMGLLRLGWLIRFISHSVISGFTTA SAIVIALSQAKYFLGYDIERSSEIVPIIKSIISGADEFSWPPFVMGSIILIILQTMKH LGKSRKHLRFLRAMGPLTAVVLGTTFVKIYHPSSITLVGDIPQGLPSFSIPRSFKYAK SLIPTTLLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANIFGSFFSAYPTTG SFSRSAVNHESGAKSGLSGIVTGIIMGCALLFLTPLFEYIPQCALAAIVISAVISLVD YEEAIFLWRVDKKDFLLWTITSTTTLFLGIEIGVLVGVGVSLAFVIHESANPHIAVLG RLPGTTVYRNIQQYPEAYTYNGIVIVRIDAPIYFANISYIKDRLREYEVVVDKSTRRG PEVERIYFVILEMAPVTYIDSSAVQALKDLHHEYKSRDIQIAISNPNREVLLTLSKSR AVELIGKEWYFVRVHDAVQVCLQHVQSIKEASKTSDPSPEEKPSFFQRFLKQRGEDVL VASLESGSNSPSDSTHSDPQLEPLLFRKP" mobile_element complement(3188456..3188513) /note="source:INTACT190_F166_scaffold_7-int 7849 7906" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3188540..3189269) /note="source:INTACT190_F166_scaffold_7-int 7153 7871" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3189273..3190183 /note="source:INTACT72F_F343_scaffold_2-int 9105 9833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3189807..3190158 /note="source:CACAO_M_E49205_F4_scaffold_6 9871 10249" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3190159..3204991) /note="source:INTACT59_F126_scaffold_9-int 72 16120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3205219..3209036) /note="source:INTACT190_F166_scaffold_7-int 432 4268" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3209037..3209531) /note="source:INTACT190_F166_scaffold_7-int 7418 7906" /mobile_element_type="retrotransposon:LTR/Copia" gene 3209980..3211497 /locus_tag="TCM_042967" /note="dbxref CacaoGD:Thecc1EG042967" mRNA join(3209980..3210225,3210327..3210432,3211133..3211497) /locus_tag="TCM_042967" /product="Plant protein 1589 of Uncharacterized protein function" /inference="alignment:exonerate- protein:2:ricco:28067.m000104" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042970t1" /inference="similar to AA sequence:ricco:28067.m000104" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4116t1" CDS join(3210193..3210225,3210327..3210432,3211133..3211278) /locus_tag="TCM_042967" /note="dbxref ricco:28067.m000104; paralog of Thecc1EG042970t1" /codon_start=1 /product="Plant protein 1589 of Uncharacterized protein function" /protein_id="EOY18361.1" /db_xref="TAIR:AT3G55240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC97" /translation="MGDSSQSYIRLVQHLIEKCLIFKMTKEECMVALSKHANIKPVIT STVWNELEKENKEFFEAYAQSQSKQDRMSEEETSQMIQKMISDSPKDPDE" mobile_element 3211634..3211718 /note="source:CACAO_M_E73087_F12_scaffold_10 9017 9082" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3212510..3216021) /locus_tag="TCM_042968" /note="dbxref CacaoGD:Thecc1EG042968" mRNA complement(join(3212510..3212897,3214339..3214479, 3214567..3214684,3215160..3215303,3215613..3215703, 3215796..3216021)) /locus_tag="TCM_042968" /product="Dehydroascorbate reductase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019159t1" /inference="similar to AA sequence:ricco:29939.m000529" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01001t00001" mRNA complement(join(3212611..3212897,3214339..3214479, 3214567..3214684,3215160..3215303,3215613..3215703, 3215796..3215978)) /locus_tag="TCM_042968" /product="Dehydroascorbate reductase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019159t1" /inference="similar to AA sequence:ricco:29939.m000529" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03858t00001; alternateUTRof:Thecc1EG042968t1; inference alignment:Newbler:10:TSA:cgbaP1_g01001t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc226t9" CDS complement(join(3212811..3212897,3214339..3214479, 3214567..3214684,3215160..3215303,3215613..3215703, 3215796..3215853)) /locus_tag="TCM_042968" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29939.m000529; paralog of Thecc1EG019159t1" /codon_start=1 /product="Dehydroascorbate reductase 2 isoform 1" /protein_id="EOY18362.1" /db_xref="TAIR:AT1G75270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7R8B3" /translation="MALEICVKAAAGAPDVLGDCPFCQRVVLTLEEKKVPYKMHLVNL SDKPRWFLEISPEGKVPVVKFDDKWVPDSDVIVGILEEKYPEPSLKTPPEFASVGSKI FGTFITFLKSRDANDGSEQALLNELKALDEHLKGQGPFIAGEKITAIDLSLGPKLYHL EIALGHFKKWTIPESLTCVHGYLKLIFSQESFVKTSVAKEFVITGWAPKVNA" CDS complement(join(3212811..3212897,3214339..3214479, 3214567..3214684,3215160..3215303,3215613..3215703, 3215796..3215853)) /locus_tag="TCM_042968" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29939.m000529; paralog of Thecc1EG019159t1" /codon_start=1 /product="Dehydroascorbate reductase 2 isoform 1" /protein_id="EOY18363.1" /db_xref="TAIR:AT1G75270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7R8B3" /translation="MALEICVKAAAGAPDVLGDCPFCQRVVLTLEEKKVPYKMHLVNL SDKPRWFLEISPEGKVPVVKFDDKWVPDSDVIVGILEEKYPEPSLKTPPEFASVGSKI FGTFITFLKSRDANDGSEQALLNELKALDEHLKGQGPFIAGEKITAIDLSLGPKLYHL EIALGHFKKWTIPESLTCVHGYLKLIFSQESFVKTSVAKEFVITGWAPKVNA" gene 3213806..3214283 /locus_tag="TCM_042969" /note="dbxref CacaoGD:Thecc1EG042969" mRNA 3213806..3214283 /locus_tag="TCM_042969" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc5808t1_C2" CDS 3213920..3214129 /locus_tag="TCM_042969" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18364.1" /translation="MNSHSKVSSLAFMFCYIEPALCSFEMYIVTEVYHATFCCSYLLT YSITPNYVCYNTIKLQITKLIQIGL" gene 3217780..3218800 /locus_tag="TCM_042970" /note="dbxref CacaoGD:Thecc1EG042970" mRNA join(3217780..3217961,3218067..3218172,3218429..3218800) /locus_tag="TCM_042970" /product="Plant protein 1589 of Uncharacterized protein function" /inference="alignment:exonerate- protein:2:frave:gene23387.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042967t1" /inference="similar to AA sequence:ricco:29939.m000530" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08365t00001" CDS join(3217929..3217961,3218067..3218172,3218429..3218574) /locus_tag="TCM_042970" /note="dbxref ricco:29939.m000530; paralog of Thecc1EG042967t1" /codon_start=1 /product="Plant protein 1589 of Uncharacterized protein function" /protein_id="EOY18365.1" /db_xref="TAIR:AT3G55240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC97" /translation="MGDSSSSYIHMVQHLIEKCLIFKMTKEECMEALSKHASIEPVIT STVWNELEKENKEFFEAYAQSQSKQDRMSEEETSQMIQKMISDSPKDHDD" gene complement(3219471..3221712) /locus_tag="TCM_042971" /note="dbxref CacaoGD:Thecc1EG042971" mRNA complement(join(3219471..3219510,3220231..3220492, 3220938..3221078,3221313..3221424,3221517..3221605)) /locus_tag="TCM_042971" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is medium, express is strong, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc302t8" mobile_element 3220023..3220070 /note="source:scaffold_8_CACTA_0850 10823 10870" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(3220239..3220492,3221335..3221424, 3221517..3221712)) /locus_tag="TCM_042971" /product="Uncharacterized protein isoform 3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9698t2; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc302t8" mRNA complement(join(3220382..3220492,3220938..3221073, 3221331..3221424,3221517..>3221547)) /locus_tag="TCM_042971" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is weak, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g14788t00001; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc302t8" CDS complement(join(3220419..3220492,3221335..3221424, 3221517..3221574)) /locus_tag="TCM_042971" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY18368.1" /translation="MDLEICVKAAADGPDVLGGCPFCQRVLLTLDEKWVPDTLHLVNL SNKPNVDFLSRVLCENSGCQGTRDCGMGA" CDS complement(join(3221022..3221073,3221331..3221424, 3221517..>3221547)) /locus_tag="TCM_042971" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18367.1" /translation="AADGPDVLGGCPFCQRVLLTLDEKWVPDTLHLVNLSNKPNGFGD KCRRKVPVVKFDEK" CDS complement(join(3221039..3221078,3221313..3221424, 3221517..3221574)) /locus_tag="TCM_042971" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18366.1" /translation="MDLEICVKAAADGPDVLGGCPFCQRVLLTLDEKWVPDTLHLVNL SNKPNGLECSMQMFLEISAEGRYQW" gene 3222310..3223891 /locus_tag="TCM_042972" /note="dbxref CacaoGD:Thecc1EG042972" mRNA join(3222310..3222563,3222665..3222770,3223507..3223891) /locus_tag="TCM_042972" /product="Plant protein 1589 of Uncharacterized protein function" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023534001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042970t1" /inference="similar to AA sequence:ricco:28067.m000104" /note="quality class is medium, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" CDS join(3222561..3222563,3222665..3222770,3223507..3223637) /locus_tag="TCM_042972" /note="dbxref ricco:28067.m000104; paralog of Thecc1EG042970t1" /codon_start=1 /product="Plant protein 1589 of Uncharacterized protein function" /protein_id="EOY18369.1" /db_xref="TAIR:AT3G55240.1" /translation="MVQHLIEKCLISNMTKEECMEALSKHASIQPVITFTVWNELETV IKDFFEAYAQSQSKQDRMSEAETSQMIQKTILDSP" gene 3226020..3231696 /locus_tag="TCM_042973" /note="dbxref CacaoGD:Thecc1EG042973" mRNA join(3226020..3226353,3227244..3227336,3227470..3229526, 3229959..3230078,3230213..3231696) /locus_tag="TCM_042973" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29679.m000380" /inference="similar to AA sequence:Phytozome:POPTR_0010s21850.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b041484t1a3; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc405t3" mRNA join(3226020..3226353,3227244..3227320,3227470..3229526, 3229959..3230127,3230213..3231696) /locus_tag="TCM_042973" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29679.m000380" /inference="similar to AA sequence:Phytozome:POPTR_0010s21850.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc405t3" CDS join(3227541..3229526,3229959..3230127,3230213..3230865) /locus_tag="TCM_042973" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18370.1" /db_xref="Phytozome:POPTR_0010s21850.1" /db_xref="TAIR:AT3G53540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTP4" /translation="MSMNMECKPATPSVIAKLMGLDELPTQQPVKKQKRQRVLSENYL RKVASIGVWEKRSFDERHSYRFSIEEQKEFKDVYEVIESLERDKESDLFAEKGRADLR SSEEKIPILSGSHADADCVPVGVKLQHLKEVHSGQYGPGFVDSRMDYFENHFQNPDYL TTKPFYDQEGVSSHLLSGHVRISEPAYSLDSENTDIYREVRNRTDQGNAKLRQQLENH LVKDFQRKYGPDSMFPGCRLESNNEKHPSFRKVVVLKPKPGKVEDASNCLSSPSSSEG SYSGNRKDKGFLSHGKGNSHTQVKERKNLSNDVKSTGHRSIPSCGSEKEITRKTRHKT SDIPLQPPRSGFSGVHSLAKEPELMMVSSPNYSDLNNWYKPSCNYLDGSYVAQEAKKQ ISERWRMNKEFRENGLTFGGRGRSRTLGEMLALPDYDKYANFRTPLGISSRDGWKKMG VGDLIKSRSPAYFTSVGSPKTRTSHKAFHDDLCMTMRPMFSLNWSRLKSSKQGSSGKD DLERRNSGSNCKKSQSSPYLKSEKNHLLEDKYVIHYMFKNKLEKQDRAEQHSIVRKSL KHDVDCSDSENEITPIDQCNDIKDGNMSPEGSVVPESPMCTVASPSMASDMVVAIENV SVSKCTENHKQPQFEPIGCTMSEKDYDSSFIPDASSKQEDMLMEISEECGTDPDSLVN LERAYQPSPVSVLEAPFAEEVLSNSECFHSVSASLHDVRRQLEFLKSESYEGYSEGPG MVVSSDDDDDDAGEESLKNCEVNEDSTKLFGVEESRDFSYMVDVLTEAGFHSRNQNIG FDGRHSPEIPISPSIFDALEKKYDEQIAWKRSARRLLFDRINSGLMEILQPCFGEPIW AKPVARRLSFRQNLKEIKEELYMLLVSQEKEARKDSSEKVLGKDDGWLFLGYDIEVIG REIENSLIDELAAEIVSLESF" CDS join(3227541..3229526,3229959..3230078,3230213..3230218) /locus_tag="TCM_042973" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18371.1" /db_xref="Phytozome:POPTR_0010s21850.1" /db_xref="TAIR:AT3G53540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTP4" /translation="MSMNMECKPATPSVIAKLMGLDELPTQQPVKKQKRQRVLSENYL RKVASIGVWEKRSFDERHSYRFSIEEQKEFKDVYEVIESLERDKESDLFAEKGRADLR SSEEKIPILSGSHADADCVPVGVKLQHLKEVHSGQYGPGFVDSRMDYFENHFQNPDYL TTKPFYDQEGVSSHLLSGHVRISEPAYSLDSENTDIYREVRNRTDQGNAKLRQQLENH LVKDFQRKYGPDSMFPGCRLESNNEKHPSFRKVVVLKPKPGKVEDASNCLSSPSSSEG SYSGNRKDKGFLSHGKGNSHTQVKERKNLSNDVKSTGHRSIPSCGSEKEITRKTRHKT SDIPLQPPRSGFSGVHSLAKEPELMMVSSPNYSDLNNWYKPSCNYLDGSYVAQEAKKQ ISERWRMNKEFRENGLTFGGRGRSRTLGEMLALPDYDKYANFRTPLGISSRDGWKKMG VGDLIKSRSPAYFTSVGSPKTRTSHKAFHDDLCMTMRPMFSLNWSRLKSSKQGSSGKD DLERRNSGSNCKKSQSSPYLKSEKNHLLEDKYVIHYMFKNKLEKQDRAEQHSIVRKSL KHDVDCSDSENEITPIDQCNDIKDGNMSPEGSVVPESPMCTVASPSMASDMVVAIENV SVSKCTENHKQPQFEPIGCTMSEKDYDSSFIPDASSKQEDMLMEISEECGTDPDSLVN LERAYQPSPVSVLEAPFAEEM" gene 3232267..3233681 /locus_tag="TCM_042974" /note="dbxref CacaoGD:Thecc1EG042974" mRNA 3232267..3233681 /locus_tag="TCM_042974" /product="Disease resistance-responsive family protein" /inference="alignment:exonerate- protein:2:ricco:29679.m000379" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041917t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04910.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc11883t1" CDS 3232342..3233244 /locus_tag="TCM_042974" /note="paralog of Thecc1EG041917t1" /codon_start=1 /product="Disease resistance-responsive family protein" /protein_id="EOY18372.1" /db_xref="Phytozome:POPTR_0008s04910.1" /db_xref="TAIR:AT1G07730.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQQ0" /translation="METYKLISLLLTFTIAFSTSARMLDEQPSNLSNAVVTPVTNVPP LPISPGTQSNPNVAAATGPNVAVNPNPYPDHTLTFFMHDILGGSNPTALAVTGVVSNP ALNGQLPFAKPNGANLPVNNGINQNSGNTGLINNNNVPLLTGLGGNTQAVLQNNGNNL VNGALNFPVTAGGQLPSGSTLQKLMFGTMTVIDDELTVGHELGSGFLGKAQGFYVASS IDGTSQTMAFTAMFESGHYADTLSFFGVHRTGVSESHLAIMGGTGKYVNAKGFAIVKT IPGANQQETDGFETVLEFTVYVTY" gene complement(3234223..3235692) /locus_tag="TCM_042975" /note="dbxref CacaoGD:Thecc1EG042975" mRNA complement(3234223..3235692) /locus_tag="TCM_042975" /product="Disease resistance-responsive family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04900.1" /inference="similar to AA sequence:Phytozome:Glyma18g51880.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(3234453..3235607) /locus_tag="TCM_042975" /codon_start=1 /product="Disease resistance-responsive family protein, putative" /protein_id="EOY18373.1" /db_xref="Phytozome:Glyma18g51880.1" /db_xref="TAIR:AT2G39430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80630" /translation="MAKTPILLCKTLKATIYFLFLAIIFTCANSARVLDEVEAQPQVV DDIPQPSNPVATTVPPNTLPSGQVRATTPSGSEDDDDTGPQLPEAPAAAAAPAEDEAP VATPAAPAAGGVAPIAVPAATSATTGAGAAAAASATVATPGSHDPVLSFFMHDILGGS HPSARVVTGIIANSEVSGIPFSKTNNDLFPVQGAAPLLNGNNINDLKNINNLINPNNV PFLTGLTGAQTNAILQNSGNNNNVLNGDSQPFVTAGQLPPGSLQRLMFGSITVIDDEL TEAHELGSAVLGRAQGFYLASSLDGSSQTIALTVLLHGGEHGHELEDAISFFGVHRTV SPASQIAVVGGTGKYENARGYATVETLHQEDQHITDGVDTILHFNVYLID" gene complement(3237046..3238202) /locus_tag="TCM_042976" /note="dbxref CacaoGD:Thecc1EG042976" mRNA complement(join(3237046..3237775,3237891..3238202)) /locus_tag="TCM_042976" /product="Disease resistance-responsive family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21880.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21880.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(3237090..3237775,3237891..3237912)) /locus_tag="TCM_042976" /codon_start=1 /product="Disease resistance-responsive family protein, putative" /protein_id="EOY18374.1" /db_xref="Phytozome:POPTR_0010s21880.1" /db_xref="TAIR:AT3G24020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTX0" /translation="MGYYQTPSMILLVFFLLTMVNRSTSARTLGKPTSSHHHHRKHHR ISFLMQDVLNVTQPATAKVTSQLPFSKPLGFFPPNAGIPIPETNPPVPGTGLSTQTLD ISDIGLYFPARATLQELEFGAVMTIDENLLDGTVNGSPVGKAQGVYVASSEGGPSHMM ALTTFFANSKFKDGLRFFGLHRRDVAESHIAVIGGIGKYVGANGYATVKAVDLRSNAA AEKQGVNKLLSFNVYLI" gene 3238327..3243647 /locus_tag="TCM_042977" /note="dbxref CacaoGD:Thecc1EG042977" mRNA join(3238327..3241600,3241887..3242378,3242785..3242947, 3243269..3243647) /locus_tag="TCM_042977" /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04890.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04890.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is medium, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1961t1" mRNA join(3238553..3241246,3241366..3241497,3242031..3242378, 3242785..3242915) /locus_tag="TCM_042977" /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04890.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04890.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9102t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1961t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1955t1" mRNA join(3238553..3241246,3241366..3241708) /locus_tag="TCM_042977" /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04890.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04890.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is medium, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc244t5; alternateUTRof:Thecc1EG042977t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1961t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1955t1" CDS join(3238586..3241600,3241887..3242378,3242785..3242922) /locus_tag="TCM_042977" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1" /protein_id="EOY18375.1" /db_xref="Phytozome:POPTR_0008s04890.1" /db_xref="TAIR:AT3G55200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A4RYT7" /translation="MYLYNLTLQQATGIVSAINGNFSGGKIQEIVVARGKILSLLRPD DLGKLQTLHSVEIFGSIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKIH QETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAH KSHTIVYSICGVDCGFDNPIFAAIELDYLEADQDSTGLAAGEAQKHLTFYELDLGLNH VSRKWSEQVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLP AERGVLIVSAATHKQKSMFFFLLQTEYGDIFKVTLDYGNDGVTELKIKYFDSIPVTSS MCVLKTGFLFAASEFGNHGLYQFQAIGDEPDVESSSSTLMETEEGFQPVFFQPRGLKN LVRIDQAESLMPIMDMKIANLFEEETPQIFSLCGRGPRSSLRILRPGLAISEMAVSQL PGVPSAVWTVKKNVNDAFDAYIVVSFANATLVLSIGETVEEVSDSGFLDTTPSLAVSL IGDDSLMQVHPNGIRHIREDGRINEWRTPGKRTIVKVGSNGLQVVIALSGGELIYFEV DMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCMQI LSVQSVSSPPESLLFLEVKASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLS DSRSRFLGLRAPKLFSIKVRGRPAMLCLSSRPWLGYIHQGHFLLTPLSYETLEFAASF SSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTPRKFVLQPKRKLLVIIESD QGSYTAEEREVARKECFEAAGMGENGNGNVDQMENGGDDEDKEDPLSDEQYGYPKAES DKWVSCIRVLDPRTATTTCLLELQDNEAAFSVCTVNFHDKEYGTLLAVGTAKGLQFWP KRSLVTGFIHIYRFLEDGRSLELLHKTQVEGVPLALCQFQGRLLAGIGSVLRLYDLGK KRLLRKCENKLFPNTIVCIHTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDVVPRW LTASYHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGRLNGAPNKVE EIVQFHIGDVVTSLQKASLIPGGGECVLYGTVMGSLGALLPFTSRDDVDFFSHLEMHM RQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEILK KLEEVRNKII" CDS join(3238586..3241246,3241366..3241392) /locus_tag="TCM_042977" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 2" /protein_id="EOY18376.1" /db_xref="Phytozome:POPTR_0008s04890.1" /db_xref="TAIR:AT3G55200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A4RYT7" /translation="MYLYNLTLQQATGIVSAINGNFSGGKIQEIVVARGKILSLLRPD DLGKLQTLHSVEIFGSIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKIH QETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAH KSHTIVYSICGVDCGFDNPIFAAIELDYLEADQDSTGLAAGEAQKHLTFYELDLGLNH VSRKWSEQVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLP AERGVLIVSAATHKQKSMFFFLLQTEYGDIFKVTLDYGNDGVTELKIKYFDSIPVTSS MCVLKTGFLFAASEFGNHGLYQFQAIGDEPDVESSSSTLMETEEGFQPVFFQPRGLKN LVRIDQAESLMPIMDMKIANLFEEETPQIFSLCGRGPRSSLRILRPGLAISEMAVSQL PGVPSAVWTVKKNVNDAFDAYIVVSFANATLVLSIGETVEEVSDSGFLDTTPSLAVSL IGDDSLMQVHPNGIRHIREDGRINEWRTPGKRTIVKVGSNGLQVVIALSGGELIYFEV DMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCMQI LSVQSVSSPPESLLFLEVKASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLS DSRSRFLGLRAPKLFSIKVRGRPAMLCLSSRPWLGYIHQGHFLLTPLSYETLEFAASF SSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTPRKFVLQPKRKLLVIIESD QGSYTAEEREVARKECFEAAGMGENGNGNVDQMENGGDDEDKEDPLSDEQYGYPKAES DKWVSCIRVLDPRTATTTCLLELQDNEAAFSVSGRWQIA" CDS join(3238586..3241246,3241366..3241392) /locus_tag="TCM_042977" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 2" /protein_id="EOY18377.1" /db_xref="Phytozome:POPTR_0008s04890.1" /db_xref="TAIR:AT3G55200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A4RYT7" /translation="MYLYNLTLQQATGIVSAINGNFSGGKIQEIVVARGKILSLLRPD DLGKLQTLHSVEIFGSIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKIH QETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAH KSHTIVYSICGVDCGFDNPIFAAIELDYLEADQDSTGLAAGEAQKHLTFYELDLGLNH VSRKWSEQVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLP AERGVLIVSAATHKQKSMFFFLLQTEYGDIFKVTLDYGNDGVTELKIKYFDSIPVTSS MCVLKTGFLFAASEFGNHGLYQFQAIGDEPDVESSSSTLMETEEGFQPVFFQPRGLKN LVRIDQAESLMPIMDMKIANLFEEETPQIFSLCGRGPRSSLRILRPGLAISEMAVSQL PGVPSAVWTVKKNVNDAFDAYIVVSFANATLVLSIGETVEEVSDSGFLDTTPSLAVSL IGDDSLMQVHPNGIRHIREDGRINEWRTPGKRTIVKVGSNGLQVVIALSGGELIYFEV DMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCMQI LSVQSVSSPPESLLFLEVKASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLS DSRSRFLGLRAPKLFSIKVRGRPAMLCLSSRPWLGYIHQGHFLLTPLSYETLEFAASF SSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTPRKFVLQPKRKLLVIIESD QGSYTAEEREVARKECFEAAGMGENGNGNVDQMENGGDDEDKEDPLSDEQYGYPKAES DKWVSCIRVLDPRTATTTCLLELQDNEAAFSVSGRWQIA" gene 3243777..3248132 /locus_tag="TCM_042978" /note="dbxref CacaoGD:Thecc1EG042978" mRNA join(3243777..3244038,3247373..3247999) /locus_tag="TCM_042978" /product="Prefoldin 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017982001" /inference="similar to AA sequence:Phytozome:Glyma13g18530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1903t1" CDS join(3243892..3244038,3247373..3247819) /locus_tag="TCM_042978" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Prefoldin 2 isoform 1" /protein_id="EOY18378.1" /db_xref="Phytozome:Glyma13g18530.1" /db_xref="TAIR:AT3G22480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HDQ6" /translation="MRPSPSHLFPSHFQVPSRSFCAADFTLLLCSKIQHFVSTPTPIC DTQTQRIMASKSESKEPVNEQIVANTYGAMRSELNQIYSKITELEMEVSEHSLVINAI QPLDQSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVITRLNEALEKKKKEIADFE AKYKIRIKKSDSDVKDESSKKEGSAQGVLVGPASSSG" mRNA join(<3243902..3244038,3247363..3248132) /locus_tag="TCM_042978" /product="Prefoldin 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017982001" /inference="similar to AA sequence:Phytozome:Glyma13g18530.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1903t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1903t1" CDS join(<3243902..3244038,3247363..3247819) /locus_tag="TCM_042978" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Prefoldin 2 isoform 2" /protein_id="EOY18379.1" /db_xref="Phytozome:Glyma13g18530.1" /db_xref="TAIR:AT3G22480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HDQ6" /translation="AQAICSLPTSKFQAEVFVQPTLPFFSVQKSSISCLLLLRFATPR PSYLQRIMASKSESKEPVNEQIVANTYGAMRSELNQIYSKITELEMEVSEHSLVINAI QPLDQSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVITRLNEALEKKKKEIADFE AKYKIRIKKSDSDVKDESSKKEGSAQGVLVGPASSSG" gene complement(3248006..3250365) /locus_tag="TCM_042979" /note="dbxref CacaoGD:Thecc1EG042979" mRNA complement(join(3248006..3248577,3248667..3248765, 3248864..3249001,3249445..3249575,3249658..3249804, 3249891..3250017,3250099..3250131,3250220..3250365)) /locus_tag="TCM_042979" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042983t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04880.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8986t1" CDS complement(join(3248290..3248577,3248667..3248765, 3248864..3249001,3249445..3249575,3249658..3249804, 3249891..3250017,3250099..3250131,3250220..3250228)) /locus_tag="TCM_042979" /note="paralog of Thecc1EG042983t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY18380.1" /db_xref="Phytozome:POPTR_0008s04880.1" /db_xref="TAIR:AT2G39420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXN7" /translation="MALTHPDENVNYDETFITNSRGLKLFTCKWIPVDKEPKALIFIC HGYAMECSITMSSTATRLVKEGYAVYGMDYQGHGKSAGLEAYIQNFDDIINDCSDHFT NICEKEENKGKMRYLLGESMGGALALLLHRKMPAFWDGTILVAPMCKIADNMKPSPPV TFLLRGICWLAPTWKSPIHRDIVEVAFKEPEIREEIRKNPYCYKGPLRMKTAFELLRV SLDIEKRLDEVKLPFIVLHGEDDKVTDQQVSKQLYNVASSTDKTLKLYPGMWHGLLYG EPLENIDIVFLDIVRWLEERTSLGDSRLEMERKLENDRLYVTKINKL" mobile_element complement(3249389..3249445) /note="source:CACAO_M_E42809_F5_scaffold_5 6334 6390" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3249884..3250036) /note="source:CACAO_PIF_E144_scaffold_10 5822 5974" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 3250660..3254274 /locus_tag="TCM_042980" /note="dbxref CacaoGD:Thecc1EG042980" mRNA join(3250660..3250737,3252444..3253074,3253141..3253277, 3253370..3253661,3253996..3254274) /locus_tag="TCM_042980" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042939t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" gene 3251130..3253150 /locus_tag="TCM_042981" /note="dbxref CacaoGD:Thecc1EG042981" mRNA join(3251130..3251394,3252444..3253150) /locus_tag="TCM_042981" /product="Ankyrin repeat-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042939t1" /inference="similar to AA sequence:Phytozome:Glyma06g36910.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" mobile_element complement(3251402..3251658) /note="source:CACAO_PIF_E144_scaffold_10 8621 8882" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3251677..3251830) /note="source:CACAO_PIF_E144_scaffold_10 6998 7150" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3251826..3252036) /note="source:CACAO_PIF_E144_scaffold_10 6902 7116" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS 3252681..3253130 /locus_tag="TCM_042981" /note="paralog of Thecc1EG042939t1" /codon_start=1 /product="Ankyrin repeat-containing protein" /protein_id="EOY18382.1" /db_xref="Phytozome:Glyma06g36910.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDERLRSAAQSGNIDDLYVLIQDDADVLRRIDEMEFVDTPLHIA SAAGHTDFAMELMNLKPSFARKLNQGGFSPLHLASQCPETEMVVDYLLSIDKDLVRVK GREGYTPLHHAAREGNVPLLSKFLEYCPNCILDLTIRKETALHIAAQ" CDS join(3253158..3253277,3253370..3253661,3253996..3254111) /locus_tag="TCM_042980" /note="paralog of Thecc1EG042939t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18381.1" /translation="MDWIQRTDKYYDFEKRSTLNLQDKDGITVLHIAVSNNQREMIKR LTESKKVDRNRVNQSGFTALVVLEVQAPVDRESVNILKRAKDPPLRFRRVSYLAKFGR DIEEMKPDAINALLVVFALILLLVLLLASLKCCLLVDREKTAFMLPCPSPKMPPVPVS PGHPLAAAFVLFCFL" mobile_element complement(3254997..3268331) /note="source:CACAO_PIF_E144_scaffold_10 1 13335" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(3259610..3263030) /locus_tag="TCM_042983" /note="dbxref CacaoGD:Thecc1EG042983" mRNA complement(join(3259610..3260125,3260239..3260337, 3260495..3260632,3261748..3261878,3262051..3262197, 3262365..3262491,3262588..3262620,3262776..3263030)) /locus_tag="TCM_042983" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:frave:gene23378.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042979t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21900.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10301t00001" CDS complement(join(3259829..3260125,3260239..3260337, 3260495..3260632,3261748..3261878,3262051..3262197, 3262365..3262491,3262588..3262620,3262776..3262778)) /locus_tag="TCM_042983" /note="paralog of Thecc1EG042979t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY18383.1" /db_xref="Phytozome:POPTR_0010s21900.1" /db_xref="TAIR:AT2G39420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXN7" /translation="MDLENGTVRYEEEYIINSRGLKLFTCKWIPMNEEPKGLIFICHG YAMECSISMNSTAIRLVKAGFAVYGIDYEGHGKSSGLQGYVTSFDNVVDDCSNFFTQI CEKKENKKKMRFLLGESMGGAVLLLVHMKKPEYWDGAVLVAPMCKIADEMKPHPLVIS VLTKLCNFIPTWKIIPSKDVIDAAFRRPEIREQIRANPYCYKGRPRLKTGNELLKTSM ELEQRLNEVSLPFIVLHGGDDKVTDKAVSQQLYDVAASSDKTFKLYPGMWHGLLYGET PENIEIVFADIINWLNQRTESGNSRLERELKHQNDELSMSENKEQISS" mobile_element 3271603..3271670 /note="source:scaffold_7_CACTA_0789 3158 3224" /mobile_element_type="transposon:TIR/CACTA" gene 3273177..3275603 /locus_tag="TCM_042984" /note="dbxref CacaoGD:Thecc1EG042984" mRNA join(3273177..3273249,3273393..3273528,3274530..3274686, 3275291..3275603) /locus_tag="TCM_042984" /product="Ribosomal L29 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041920t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21910.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01998t00001" CDS join(3273246..3273249,3273393..3273528,3274530..3274686, 3275291..3275365) /locus_tag="TCM_042984" /note="paralog of Thecc1EG041920t1" /codon_start=1 /product="Ribosomal L29 family protein" /protein_id="EOY18384.1" /db_xref="Phytozome:POPTR_0010s21910.1" /db_xref="TAIR:AT5G02610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KDR2" /translation="MARIKVHELRQKSKTELLAQLKDLKAELALLRVAKVTGGAPNKL SKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASL KTEREKKREMYFPMRKYAIKV" mobile_element 3273515..3273589 /note="source:CACAO_M_S_E51240_F74_scaffold_4 2214 2287" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3280033..3282462 /locus_tag="TCM_042985" /note="dbxref CacaoGD:Thecc1EG042985" mRNA 3280033..3282462 /locus_tag="TCM_042985" /product="Exocyst subunit exo70 family protein H2" /inference="alignment:exonerate- protein:2:ricco:29587.m000223" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022020t1" /inference="similar to AA sequence:ricco:29587.m000223" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10200t1" CDS 3280366..3282285 /locus_tag="TCM_042985" /note="dbxref ricco:29587.m000223; paralog of Thecc1EG022020t1" /codon_start=1 /product="Exocyst subunit exo70 family protein H2" /protein_id="EOY18385.1" /db_xref="TAIR:AT2G39380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80625" /translation="MVLAETSKNNCLIPRTGLSPLFFSSSKGLTSSSSSPPISPTVSS PGHTFSEFMMEENIENAESIITKWDVNSSSLTQVTSLFHQNRKEAREYLKCVGDLRRS MHFLVSQKSASYKLVLAQKLMQMAMKRLEKEFYQILSSNREQLDPESVSSLSSDGSGS FYVEHELVSEDEAELKKAGESITEVERVSALVMSDLKAIAECMTSCGYGKECIKIYKL FRKSIVDRGLYLLGIERLKSSQINKMHWEALEHTIKNWLNAVKIAVRTLFTGEKILCD HVFAASETIREACFAEITMEGAINLFRFPELIAKSKKEPERIFWLLEFHEAISELWPE IETIFNSALTSAIKLQALSSLHRAGDSVSAILSNFRSSIQKDSSKTLVAGGGIHPLTR SAMSYISSLADYGRVLSDIVADHPPPGNSPSSESYFENPTSIDGPTSAGSVHLAWLIL VLLCKLDRKAELYKDVSLRYLFLANNLQFIIDRVHTTNLKYLLGDKWASMHTKKIKQY ALRYESLAWNKVFSSLPEGTSSVLSPEAVKDCFRRFNAAFDEAYMKQTLWLVPDGKLR DELKVSIARKLTPAYREFYETQLVALSGEENLEVLVRIAPDDLGNYLSDLFHGTPCSS NSLSSSSHSRGCLPR" gene complement(3282554..3285848) /locus_tag="TCM_042986" /note="dbxref CacaoGD:Thecc1EG042986" mRNA complement(join(3282554..3283145,3284400..3284468, 3284577..3284682,3285145..3285496,3285581..3285765)) /locus_tag="TCM_042986" /product="Pectin lyase-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04850.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04850.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b041497t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1911t4" mRNA complement(join(3282554..3283145,3284400..3284468, 3284577..3284787,3285145..3285496,3285581..3285728)) /locus_tag="TCM_042986" /product="Pectin lyase-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021794t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04850.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1911t4" mRNA complement(join(3282674..3283145,3284400..3284468, 3284577..3284787,3285145..3285484,3285581..3285848)) /locus_tag="TCM_042986" /product="Pectin lyase-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021794t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04850.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc658t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg1911t4" CDS complement(join(3282927..3283145,3284400..3284468, 3284577..3284787,3285145..3285484,3285581..3285707)) /locus_tag="TCM_042986" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021794t1" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 2" /protein_id="EOY18387.1" /db_xref="Phytozome:POPTR_0008s04850.1" /db_xref="TAIR:AT3G55140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3D5" /translation="MDSLPYADADSTLRAIAGQAEGFGRFAIGGLHGPLFCVTSLSGS LREACRRPGPGWIVFEVSGVIQLSSYLSVGSYKTIDGRGERVKLTGNGLRLKECENVI ICNMEFEGGRGHDVDGIQIKPNSKHIWIDRCSFKDYDDGLIDITRGSTDITVSRCYFA QHDKTMLIGADPSHVWDRCIRVTIHHCFFDRTRQRHPRVRFGKVHLYNNYTRNWDIYA VCASVEAQIYSQCNIYEAGMKKKTFEFYTEKAADREEPRSGLIRSEGDLFLDGAQPCL LTGIGQDSLFHPSEFYQTWTMEAPSDSLKHVLQICTGWQPIPRPP" CDS complement(join(3282927..3283145,3284400..3284468, 3284577..3284682,3285145..3285496,3285581..3285707)) /locus_tag="TCM_042986" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 3" /protein_id="EOY18388.1" /db_xref="Phytozome:POPTR_0008s04850.1" /db_xref="TAIR:AT3G55140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3D5" /translation="MDSLPYADADSTLRAIAGQAEGFGRFAIGGLHGPLFCVTSLSDD GPGSLREACRRPGPGWIVFEVSGVIQLSSYLSVGSYKTIDGRGERVKLTGNGLRLKEC ENVIICNMEFEGGRGHDVDGIQIKPNSKHIWIDRCSFKDYDDGLIDITRGSTDITVSR TRQRHPRVRFGKVHLYNNYTRNWDIYAVCASVEAQIYSQCNIYEAGMKKKTFEFYTEK AADREEPRSGLIRSEGDLFLDGAQPCLLTGIGQDSLFHPSEFYQTWTMEAPSDSLKHV LQICTGWQPIPRPP" CDS complement(join(3282927..3283145,3284400..3284468, 3284577..3284787,3285145..3285496,3285581..3285707)) /locus_tag="TCM_042986" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021794t1" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 1" /protein_id="EOY18386.1" /db_xref="Phytozome:POPTR_0008s04850.1" /db_xref="TAIR:AT3G55140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3D5" /translation="MDSLPYADADSTLRAIAGQAEGFGRFAIGGLHGPLFCVTSLSDD GPGSLREACRRPGPGWIVFEVSGVIQLSSYLSVGSYKTIDGRGERVKLTGNGLRLKEC ENVIICNMEFEGGRGHDVDGIQIKPNSKHIWIDRCSFKDYDDGLIDITRGSTDITVSR CYFAQHDKTMLIGADPSHVWDRCIRVTIHHCFFDRTRQRHPRVRFGKVHLYNNYTRNW DIYAVCASVEAQIYSQCNIYEAGMKKKTFEFYTEKAADREEPRSGLIRSEGDLFLDGA QPCLLTGIGQDSLFHPSEFYQTWTMEAPSDSLKHVLQICTGWQPIPRPP" mobile_element complement(3286340..3286375) /note="source:CACAO_M_E44848_F172_scaffold_6 1923 1964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3286359..3286422 /note="source:CACAO_M_E5899_F5_scaffold_2 20728 20793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3286376..3286433) /note="source:scaffold_5_CACTA_0580 7215 7273" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3286561..3286928 /note="source:CACAO_M_S_E5210_F12_scaffold_1 7956 8310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3286569..3287088) /note="source:INTACT726_F314_scaffold_5-int 13422 13899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3287205..3289286) /note="source:INTACT726_F314_scaffold_5-int 11207 13304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3289215..3289301 /note="source:CACAO_M_E57346_F74_scaffold_9 5056 5140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3289843..3289974) /note="source:CACAO_PIF_E119_scaffold_3 4456 4596" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3290489..3290699) /note="source:scaffold_1_CACTA_0008 14067 14270" /mobile_element_type="transposon:TIR/CACTA" gene 3293002..3295315 /locus_tag="TCM_042987" /note="dbxref CacaoGD:Thecc1EG042987" mRNA 3293002..3295315 /locus_tag="TCM_042987" /product="3-ketoacyl-CoA synthase" /inference="alignment:exonerate- protein:2:ricco:29690.m000413" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042988t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21940.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4128t1" CDS 3293080..3294447 /locus_tag="TCM_042987" /note="paralog of Thecc1EG042988t1" /codon_start=1 /product="3-ketoacyl-CoA synthase" /protein_id="EOY18389.1" /db_xref="Phytozome:POPTR_0010s21940.1" /db_xref="TAIR:AT5G04530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTX8" /translation="MELFMTICLIFLYCIVFFICKLFLQMRNQYCYILAYECYKAPED RKLDTETCGKLIMRNKNLGLEQYRFLLQAMVNAGIGEETYGPRNVIAGTEESPTLSDA LSEIDDIVFGTLDKLFAKTGVSPSEIDILVVTVSMITSAPSLPARVINRYKMREDIKV FNLSGMGCSASVIAVDLVQNLFKTYKNAFAVIVSSESLSPNWYRGKERSMMLPNILFR LGGCSLLLTNKRALKHQAMLKLKHSVRIHAGSSDEAYESCTRIEDAQGYCGFFLTKNL PKAAAKAVTMNLRVLVPKMLPLRELVRYAVVSYWRSKSKTSAPEAAGAALNLKSGVEH FCIHPGGRAVIDAMGRSLGLNEYDLEPTRMALHRFGNTSAAGLWYVLSYTEAKKRLKK GDRILMISLGAGFKCNNCVWEVMRDLEDVNVWEDCIGLYPVKSTANTSFLEKYGWVNE PRHDK" gene 3295362..3298824 /locus_tag="TCM_042988" /note="dbxref CacaoGD:Thecc1EG042988" mRNA join(3295362..3295757,3297039..3298824) /locus_tag="TCM_042988" /product="3-ketoacyl-CoA synthase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21940.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042949t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s21940.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04845t00001" CDS 3297149..3298531 /locus_tag="TCM_042988" /note="paralog of Thecc1EG042949t1" /codon_start=1 /product="3-ketoacyl-CoA synthase" /protein_id="EOY18390.1" /db_xref="Phytozome:POPTR_0010s21940.1" /db_xref="TAIR:AT5G04530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTX8" /translation="MELFITICFSLFFCIISYFYKRVFQMRNQCCYMLAYECYKASGD RKLDTEACVRVVMRNKNLGLDQYRFLLQTMVNSGLGEETYGPRNVLAGREETPTLEDA HLEMDEIMFDTLDKLFAKTGVSPSEIDILVVDVSLFSPAPSLTARIVNRYKMRDNIKA FSLSGMGCSASMVAVDLVQHLFKTHKNAFAIVVSTETIGPHWYCGKEKSMMLSNCLFR SGGCSVLLTNKRSLKRQALMKLSHSVRTNMGANDEAYGCCMQIEDEQGYQGFLLTRSL TKAAAKAFTLNLKVLVPKILPISELLRFAIVSLCKSKRKSSTPESARAGLNLKTGIEH FCIHPGGRAVIDGLGMSLGLSEYDLEPSRMALHRFGNTSAGGLWYVLGYMEAKKRLKK GDRILMISLGAGFMCNNCVWEVTKDLEDSNVWEDSLDRYPVSRENLVNPFAEKYSWIN DECLNFVRID" mobile_element complement(3301569..3301714) /note="source:scaffold_1_CACTA_0008 14057 14191" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3303321..3303533 /note="source:CACAO_PIF_E144_scaffold_10 2174 2377" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 3303774..3309069 /locus_tag="TCM_042989" /note="dbxref CacaoGD:Thecc1EG042989" mRNA join(3303774..3303983,3304524..3305261,3306096..3306505, 3307096..3308818) /locus_tag="TCM_042989" /product="Ankyrin repeat-containing protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G12360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022022t2" /inference="similar to AA sequence:Phytozome:POPTR_0010s21950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc213t4_C2" mRNA join(3303956..3303983,3304524..3305261,3306096..3306178, 3306242..3306505,3307096..3309069) /locus_tag="TCM_042989" /product="Ankyrin repeat-containing protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G12360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022022t2" /inference="similar to AA sequence:Phytozome:POPTR_0010s21950.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc255t4; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc213t4_C2" CDS join(3303959..3303983,3304524..3305261,3306096..3306505, 3307096..3307926) /locus_tag="TCM_042989" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022022t2" /codon_start=1 /product="Ankyrin repeat-containing protein isoform 1" /protein_id="EOY18391.1" /db_xref="Phytozome:POPTR_0010s21950.1" /db_xref="TAIR:AT3G12360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7A2" /translation="MASSPIQEGGARDLEKGLATPQLSQNTLMEASPTPSPSSTATPT ALILSNSGKRIDRMSSSLTSSSSCITEHSATPSPSSFATAPALVLCNSAKRIDRMSSS LTSSSSGTAETPSPSSTTTAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQ RGDLAAVKQILADIDSQMMKTASGEDFDLEVSEIQASVVNEVNELGETALFSAADKGH LDVVKELLKYSNKETLTQKTKAGFDPLHIAASQGHYAIVQVLLDHDPGLCQTLGPSNA TPLISAATKGHTEVVNELLSRDGSLLESTRSNGKNALHLAARQGHVDIVKALLSKDPQ LARRTDKKGQTALHMAVKGQNCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRAEI VNELLSLPDSNVNALNRDHKTALDIAEGLPLSAESSDIKSCLSRYGALRANELNQPRD ELRQTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFAT VAFAAIFTVPGGDEDSGVAVVVRSPSFKIFFIFNAIALFTSLAVVVVQITLVRGETKA EKQVVEVINKLMWLASVCTSVAFMASSYIVVGRRHKWAAILVTVVGGLIMAGVLGTMT YYVVKSKRTRRKRGKNSRRSGSNSWHHSDFTNSEVEVDRIFAL" CDS join(3303959..3303983,3304524..3305261,3306096..3306178, 3306242..3306505,3307096..3307926) /locus_tag="TCM_042989" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022022t2" /codon_start=1 /product="Ankyrin repeat-containing protein isoform 2" /protein_id="EOY18392.1" /db_xref="Phytozome:POPTR_0010s21950.1" /db_xref="TAIR:AT3G12360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7A2" /translation="MASSPIQEGGARDLEKGLATPQLSQNTLMEASPTPSPSSTATPT ALILSNSGKRIDRMSSSLTSSSSCITEHSATPSPSSFATAPALVLCNSAKRIDRMSSS LTSSSSGTAETPSPSSTTTAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQ RGDLAAVKQILADIDSQMMKTASGEDFDLEVSEIQASVVNEVNELGETALFSAADKGH LDVVKELLKYSNKETLTQKTKAGFDPLHIAASQGHYAIVQVLLDHDPGLCQTLGPSNA TPLISASTRSNGKNALHLAARQGHVDIVKALLSKDPQLARRTDKKGQTALHMAVKGQN CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRAEIVNELLSLPDSNVNALNRDHKT ALDIAEGLPLSAESSDIKSCLSRYGALRANELNQPRDELRQTVTQIKKDVHTQLEQTK RTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDEDSGVAVV VRSPSFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKQVVEVINKLMWLASVCTSV AFMASSYIVVGRRHKWAAILVTVVGGLIMAGVLGTMTYYVVKSKRTRRKRGKNSRRSG SNSWHHSDFTNSEVEVDRIFAL" gene complement(3312031..3313748) /locus_tag="TCM_042990" /note="dbxref CacaoGD:Thecc1EG042990" mRNA complement(3312031..3313748) /locus_tag="TCM_042990" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29690.m000423" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022025t1" /inference="similar to AA sequence:ricco:29690.m000423" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc19702t1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8765t3" mobile_element complement(3312099..3312218) /note="source:scaffold_6_CACTA_0714 13421 13518" /mobile_element_type="transposon:TIR/CACTA" CDS complement(3312761..3313723) /locus_tag="TCM_042990" /note="dbxref ricco:29690.m000423; paralog of Thecc1EG022025t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18393.1" /db_xref="TAIR:AT2G39370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM27" /translation="MSSVSMEREPTTSPADELFYKGKLLPLHLPPRLQMVEKLLRNSN AVYEDRKDNFEEFYSTPLATTVTTPTTTSTPFESCNISPSESCRVSRELNPEEYFFDY STEVSGFIGENQKKSWTKKLKLIKQSSIGSKLKASRAYLKSLFGKSGCSDESCAAAKV ADEGSVSKAKERLDRDMKATKKNPFGQIQHDKYQTSTAVMRSFDNEKITVDNANRHRR SFSLAIKRHSTNKSSSSSSSSGSSSSCSSNASNGFQYLQFLKRSSSVNAEIENPIQGA IAHCKQSQQLMRSRKTVSEVGFYSLSASSIAVCEDQERPDLCRG" gene complement(3315428..3327119) /locus_tag="TCM_042992" /note="dbxref CacaoGD:Thecc1EG042992" mRNA complement(join(3315428..3315751,3317412..3318059, 3318179..3318249,3318620..3318713,3318788..3318855, 3318963..3319029,3319226..3319356,3319488..3319595, 3320165..3320230,3321021..3321087,3321813..3321889, 3322132..3322242,3323327..3323444,3323726..3323799, 3323920..3324016,3324240..3324292,3325304..3325399, 3325790..3326011,3326660..3327119)) /locus_tag="TCM_042992" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032617001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022026t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032617001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04435t00001" gene complement(3316253..3317172) /locus_tag="TCM_042993" /note="dbxref CacaoGD:Thecc1EG042993" mRNA complement(3316253..3317172) /locus_tag="TCM_042993" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS complement(3316555..3316926) /locus_tag="TCM_042993" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18398.1" /translation="MVNPTRRRLAVLKRFPDIEIRICLIFRTAPSFSRGLQCFQHEGT EASGMKVFQPQNLFQKVFIFLASNRVVAVAEFSCFCWCWWDTRQRCPSGRPRRGSTCQ YLNQSEHPPILIFWVVVGHSD" mRNA complement(join(3317279..3318059,3318179..3318249, 3318620..3318689,3318800..3318855,3318963..3319029, 3319226..3319356,3319488..3319595,3320165..3320230, 3321021..3321087,3321813..3321889,3322132..3322242, 3323327..3323444,3323726..3323799,3323920..3324016, 3324240..3324292,3325304..3325347)) /locus_tag="TCM_042992" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032617001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022026t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032617001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc436t2; inference alignment:Newbler:10:TSA:cgbaB_g04435t00001" mRNA complement(join(3317317..3318059,3318179..3318249, 3318620..3318713,3318788..3318855,3318963..3319029, 3319226..3319356,3319488..3319595,3320165..3320230, 3321021..3321087,3321813..3321889,3322132..3322242, 3323327..3323444,3323731..3323799,3323920..3324016, 3324240..3324292,3325304..3325399,3325790..3326011, 3326660..3326688)) /locus_tag="TCM_042992" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022026t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032617001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7718t2_C2" mRNA complement(join(3317372..3318059,3318178..3318249, 3318620..3318713,3318788..3318855,3318963..3319029, 3319226..3319356,3319488..3319595,3320165..3320230, 3321021..3321090,3321813..3321889,3322132..3322242, 3323327..3323444,3323726..3323799,3323920..3324016, 3324240..3324292,3325304..3325399,3325790..3326011, 3326660..3326997)) /locus_tag="TCM_042992" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032617001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022026t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032617001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2043t3; inference alignment:Newbler:10:TSA:cgbaB_g04435t00001" CDS complement(join(3317705..3318059,3318179..3318249, 3318620..3318713,3318788..3318855,3318963..3319029, 3319226..3319356,3319488..3319595,3320165..3320230, 3321021..3321087,3321813..3321889,3322132..3322242, 3323327..3323444,3323726..3323799,3323920..3324016, 3324240..3324292,3325304..3325399,3325790..3326011, 3326660..3326809)) /locus_tag="TCM_042992" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022026t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18394.1" /db_xref="Phytozome:GSVIVT01032617001" /db_xref="TAIR:AT5G13560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T473" /translation="MSWLRTAVNKAVEVGNKNNLTRNIKNYADTVVHHAGQAVAEGAK LFQDRVGSRSLKSVKQTIKRLEEAAISCRGSERVMVLRRWLVALKEIEKLSGGSSEGS EKSLEQIIASEEAKENPKRQSMVLYYDSDIGGAPMTFREVFLQSQALEGITISMILEA PNDEEISLLLEMFGLCLTGGKEVHNAIVSSVQDLATAFSSYQDEVLVKREELLQFAQG AITGLKINADLVRMDIEASDLKKKLDQLSASQKLPKEGHDNAFEKTTAATIEALKEAL AQIRICSTLEGILLKKKSLNNGDSPEIHAQKVDKLKVLSESLANSSAKAEKRISDHRL QKEEALTVRVAKASEADGREKEIVAEISELEKQRDELEAELKKVNISLAAANARLRNV REERDQFDEANNQIVAHLKTKEEELSKSISASRVEAEVIHTWINFLEDTWLLQSSYAE TKNKKVDEELEQHEDYFVNLAITLLSAYEKELGPSISRIGKFVENLKKLSERSEISYS PSNEGSTELNPRKHLEEEYLDYEAKIITTFSVVDNMKEQFYAQHGTISRKDDPKVKEL FDDIEKLRAEFEAIERPTLEMEIPKADTPIETPQETLSPRPALESKQPKPDTKKNPET LPVLDPAAELAKLESEFGKVGQDYSAEEIGGWEFDELERELRSGDSASGK" CDS complement(join(3317705..3318059,3318179..3318249, 3318620..3318689,3318800..3318855,3318963..3319029, 3319226..3319356,3319488..3319595,3320165..3320230, 3321021..3321087,3321813..3321889,3322132..3322242, 3323327..3323444,3323726..3323799,3323920..3324016, 3324240..3324292,3325304..3325306)) /locus_tag="TCM_042992" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG022026t1" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY18397.1" /db_xref="Phytozome:GSVIVT01032617001" /db_xref="TAIR:AT5G13560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T473" /translation="MILEAPNDEEISLLLEMFGLCLTGGKEVHNAIVSSVQDLATAFS SYQDEVLVKREELLQFAQGAITGLKINADLVRMDIEASDLKKKLDQLSASQKLPKEGH DNAFEKTTAATIEALKEALAQIRICSTLEGILLKKKSLNNGDSPEIHAQKVDKLKVLS ESLANSSAKAEKRISDHRLQKEEALTVRVAKASEADGREKEIVAEISELEKQRDELEA ELKKVNISLAAANARLRNVREERDQFDEANNQIVAHLKTKEEELSKSISASRVEAEVI HTWINFLEDTWLLQSSYAETKNKKVDEELEQHEDYFVNLAITLLSAYEKELGPSISRI GKFVENLKNNEGSTELNPRKHLEEEYLDYEAKIITTFSVVDNMKEQFYAQHGTISRKD DPKVKELFDDIEKLRAEFEAIERPTLEMEIPKADTPIETPQETLSPRPALESKQPKPD TKKNPETLPVLDPAAELAKLESEFGKVGQDYSAEEIGGWEFDELERELRSGDSASGK" CDS complement(join(3317705..3318059,3318179..3318249, 3318620..3318713,3318788..3318855,3318963..3319029, 3319226..3319356,3319488..3319595,3320165..3320230, 3321021..3321087,3321813..3321889,3322132..3322242, 3323327..3323444,3323731..3323741)) /locus_tag="TCM_042992" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022026t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18395.1" /db_xref="Phytozome:GSVIVT01032617001" /db_xref="TAIR:AT5G13560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T473" /translation="MLILMDIEASDLKKKLDQLSASQKLPKEGHDNAFEKTTAATIEA LKEALAQIRICSTLEGILLKKKSLNNGDSPEIHAQKVDKLKVLSESLANSSAKAEKRI SDHRLQKEEALTVRVAKASEADGREKEIVAEISELEKQRDELEAELKKVNISLAAANA RLRNVREERDQFDEANNQIVAHLKTKEEELSKSISASRVEAEVIHTWINFLEDTWLLQ SSYAETKNKKVDEELEQHEDYFVNLAITLLSAYEKELGPSISRIGKFVENLKKLSERS EISYSPSNEGSTELNPRKHLEEEYLDYEAKIITTFSVVDNMKEQFYAQHGTISRKDDP KVKELFDDIEKLRAEFEAIERPTLEMEIPKADTPIETPQETLSPRPALESKQPKPDTK KNPETLPVLDPAAELAKLESEFGKVGQDYSAEEIGGWEFDELERELRSGDSASGK" CDS complement(join(3318051..3318059,3318178..3318249, 3318620..3318713,3318788..3318855,3318963..3319029, 3319226..3319356,3319488..3319595,3320165..3320230, 3321021..3321090,3321813..3321889,3322132..3322242, 3323327..3323444,3323726..3323799,3323920..3324016, 3324240..3324292,3325304..3325399,3325790..3326011, 3326660..3326809)) /locus_tag="TCM_042992" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022026t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY18396.1" /db_xref="Phytozome:GSVIVT01032617001" /db_xref="TAIR:AT5G13560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T473" /translation="MSWLRTAVNKAVEVGNKNNLTRNIKNYADTVVHHAGQAVAEGAK LFQDRVGSRSLKSVKQTIKRLEEAAISCRGSERVMVLRRWLVALKEIEKLSGGSSEGS EKSLEQIIASEEAKENPKRQSMVLYYDSDIGGAPMTFREVFLQSQALEGITISMILEA PNDEEISLLLEMFGLCLTGGKEVHNAIVSSVQDLATAFSSYQDEVLVKREELLQFAQG AITGLKINADLVRMDIEASDLKKKLDQLSASQKLPKEGHDNAFEKTTAATIEALKEAL AQIRICSTLEGILLKKKSLNNGDSPEIHAQKVDKLKVLSESLANSSAKAEKRISDHSR LQKEEALTVRVAKASEADGREKEIVAEISELEKQRDELEAELKKVNISLAAANARLRN VREERDQFDEANNQIVAHLKTKEEELSKSISASRVEAEVIHTWINFLEDTWLLQSSYA ETKNKKVDEELEQHEDYFVNLAITLLSAYEKELGPSISRIGKFVENLKKLSERSEISY SPSNEGSTELNPRKHLEEEYLDYEAKIITTFSVVDNMKEQFYAQHGTISREG" gene 3327214..3341448 /locus_tag="TCM_042994" /note="dbxref CacaoGD:Thecc1EG042994" mRNA join(3327214..3327256,3330401..3330461,3330861..3331147, 3331256..3331414,3334476..3334699,3334838..3335498, 3341294..3341448) /locus_tag="TCM_042994" /product="Chalcone-flavanone isomerase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21980.1" /inference="similar to AA sequence:frave:gene23367" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2214t1" mobile_element complement(3329359..3329539) /note="source:CACAO_PIF_E119_scaffold_3 4426 4615" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(3330421..3330461,3330861..3331147,3331256..3331414, 3334476..3334699,3334838..3335044) /locus_tag="TCM_042994" /note="dbxref frave:gene23367" /codon_start=1 /product="Chalcone-flavanone isomerase family protein" /protein_id="EOY18399.1" /db_xref="TAIR:AT3G55120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5HBK6" /translation="MKNKQRFNLQNVHSQVTCPYLPLPLSTNPLPTSLFPNNYTATTF PPLHYKTHRFIPISSPEKKKKEKGLFNCRNMSTSPCVAGIQVENVTFPPNVKPPGSTK TLFLGGAGERGLEIQGKFVKFTAIGVYLEDIAVESLAVKWKGKSAEVLTESVEFFRDI VTGAFEKFIRVTTILPLTGQQYSEKVSENCVAIWKSLGLYTDAEAKAIEKFLEVFKDE NFPPGSSILFTLSAHGSLTISFSKDSSVPEVGTAVIENKLLANAVLESIVGKDGVSPV ARKSMASRLSALFDDTVEKAAQNGKPECQ" mobile_element 3330494..3330574 /note="source:INTACT433_F212_scaffold_1-int 3060 3136" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3332047..3333602 /note="source:INTACT458_F219_scaffold_7-int 14984 16378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3334054..3334099) /note="source:INTACT375F_F353_scaffold_3-int 14491 14571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3334100..3334210 /note="source:INTACT641_F282_scaffold_1-int 7241 7348" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3334211..3334261) /note="source:INTACT375F_F353_scaffold_3-int 14396 14490" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3341889..3343097) /locus_tag="TCM_042996" /note="dbxref CacaoGD:Thecc1EG042996" mRNA complement(join(3341889..3342185,3342522..3342842, 3342983..3343097)) /locus_tag="TCM_042996" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29631.m001039" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042999t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc839t1" CDS complement(join(3342108..3342185,3342522..3342842, 3342983..3343075)) /locus_tag="TCM_042996" /note="paralog of Thecc1EG042999t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY18400.1" /translation="MDRNSIERERRSNMSNLLSRLFRLLPPQPTKMSIPDMVQLATIY AKQLQRQLEELKKRKMQLEGESKAVCRVTSETICPVLDIIDSNSTMTVNLITGSNVEF TPSEIISVIEEEGAAVIGVTYNNAGGTMNILSIHCKAICSRIGIESSRLGERLKTLIE ECM" mobile_element 3345246..3345326 /note="source:CACAO_Mutator_E39_scaffold_1 127 207" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3345737..3346040 /note="source:CACAO_on_E459_scaffold_2 138 428" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3346041..3347940 /note="source:CACAO_M_E3969_F127_scaffold_1 23 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3349553..3350134 /locus_tag="TCM_042997" /note="dbxref CacaoGD:Thecc1EG042997" mRNA join(3349553..3349785,3349887..3350134) /locus_tag="TCM_042997" /product="Chalcone--flavonone isomerase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s21980.1.2" /inference="similar to AA sequence:ricco:29740.m000485" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1617t1" CDS join(3349689..3349785,3349887..3350065) /locus_tag="TCM_042997" /note="dbxref ricco:29740.m000485" /codon_start=1 /product="Chalcone--flavonone isomerase, putative" /protein_id="EOY18401.1" /translation="MSSPPSATQVDVDNIVFPPSAKPPASSTVLFLGLYIDANFKKFT AIGVYLGPNAVPLLAAKWRGKSAQELMDSVEFFRDIVAGIYTFHIPM" gene 3350821..3360479 /locus_tag="TCM_042998" /note="dbxref CacaoGD:Thecc1EG042998" mRNA join(3350821..3351020,3352060..3352707,3353068..3353143, 3353213..3354092,3360341..3360479) /locus_tag="TCM_042998" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS join(3352618..3352707,3353068..3353143,3353213..3353847) /locus_tag="TCM_042998" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18402.1" /translation="MLRKREEKDPLTVPTRTLPQAMEAMMATTRTPQPCGLGLALSLA LGSPSAWPPNPRCNATYQPAPTKLSAPNAHPSPADSTGSTHPAQTARTQQRVIGWQAH STLTSTLDSAHSHQQAGNGLRPASTQAAKRREKRGRENLERLRVNDSVLFSKICCTHF TKPIYIEFSLQNLQNSLQKPRQLMGWLLAGNSQNLGTVGRDRQQRCYSGGLGCLGRTN QTAWALGARAALGLAQTVCLGCAGCLSGALRAGSPRGLCLAPLPAASS" mobile_element 3355219..3356382 /note="source:CACAO_on_SS_E42_scaffold_2 23364 24539" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3357880..3358006 /note="source:INTACT44_F119_scaffold_6-int 882 1002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3358056..3358122) /note="source:INTACT383F_F354_scaffold_3-int 4367 4433" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(3358482..3359214) /note="source:CACAO_on_E373_scaffold_1 1 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3359206..3359286 /note="source:INTACT44_F119_scaffold_6-int 1457 1534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3359599..3359752 /note="source:INTACT44_F119_scaffold_6-int 1171 1324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3359837..3359887 /note="source:INTACT44_F119_scaffold_6-int 1598 1648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3360135..3360251 /note="source:scaffold_7_CACTA_0785 10866 10993" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3360147..3360284) /note="source:scaffold_4_CACTA_0490 3064 3196" /mobile_element_type="transposon:TIR/CACTA" gene complement(3366192..3367573) /locus_tag="TCM_042999" /note="dbxref CacaoGD:Thecc1EG042999" mRNA complement(join(3366192..3366745,3366845..3367171, 3367313..3367573)) /locus_tag="TCM_042999" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043003t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(3366680..3366745,3366845..3367171, 3367313..3367405)) /locus_tag="TCM_042999" /note="paralog of Thecc1EG043003t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY18403.1" /translation="MQRNLIERERRSNLKNLYSKLFSLLPPQPAKMSLLDKLELATVH IKQLQRQVEELKQRKMQLDDQESEAWNRVKSGRITPVLNIIDSDSIMEVNLVTGSDMK FTLGEIINIIEEEGAEVIGATYNHARKVNRNILSVHCEEIGFKGSKGLERLKSLIGDC M" gene 3368248..3369383 /locus_tag="TCM_043000" /note="dbxref CacaoGD:Thecc1EG043000" mRNA join(3368248..3368649,3368762..3369173,3369353..3369383) /locus_tag="TCM_043000" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8453t2" CDS join(3368645..3368649,3368762..3369038) /locus_tag="TCM_043000" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18404.1" /translation="MRWLLGPPSSSETSLGLSSAQGRTAIFRLSFAMDDGWMLLVCAR PVSSLLVVFDAGAAFLSACSPSVKGVLANWRRLFLESTRVLGCSFLLHD" gene 3371411..3384871 /locus_tag="TCM_043002" /note="dbxref CacaoGD:Thecc1EG043002" mRNA join(3371411..3371904,3372004..3372407,3372584..3372737, 3375312..3375535,3375949..3376199,3384774..3384871) /locus_tag="TCM_043002" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS join(3372031..3372407,3372584..3372737,3375312..3375535, 3375949..3376057) /locus_tag="TCM_043002" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18405.1" /translation="MIPKVFSQLKNFAYYLILIQMSKRYGSALYGNYPFLPSFNVSYW QFSIPFLQRVFLPPMEFIPWLIRWHAFGVAWWRNRVPIFCWYVTSVGEFGALFFNGGI FYGFCLVRFPLLFKHGPIVHLLARLVDGTLFLKVYDRSLLLSRLGISWRPLLSGQFKF NDDGFAKGKLGPSGCGGGILTMVLHDCGIFSPVSWYVPATRVVVLGLMMNDWDWAAAA WWTGLKKMGLLFLMLAGCRQGLIFWFYHELEVVRAELLALREAAFIFAASRWNLSHIL IIECDASNVVQ" gene complement(3377505..3381873) /locus_tag="TCM_043003" /note="dbxref CacaoGD:Thecc1EG043003" mRNA complement(join(3377505..3377827,3377928..3378251, 3380472..3380715,3380915..3381037,3381145..3381222, 3381702..3381873)) /locus_tag="TCM_043003" /product="Basic helix-loop-helix DNA-binding superfamily protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(3377750..3377827,3377928..3378251, 3380472..3380715,3380915..3381037,3381145..3381222, 3381702..3381817)) /locus_tag="TCM_043003" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein" /protein_id="EOY18406.1" /translation="MIGFPLEKSAPMCTTYPEANQHPVETIRSQLPEVTNKARHSILH YGEAHEGNLAAASLQSFHNFNLVMSSLSGRNESKFDGKRTKMEHEKSLIQAPFLSFLL SRLRQLEELKQRKMQLEGESEALSKLTSETISPVLNIVDSNSNMRLDMKFALSDIISL IEEEGATVIAVTYNNAGTMNILSIHCKMSISSNLELATVHIKELQRQVEELKERKMQL EVASEARNRVKSETITPVLNIIESDSIMEVNLVIGSDMKFILGEIISIIEQEGAEVIG ATYNHAGKVNRNILSIHCEVACSKIGFKSSKVLERLKTLFGECM" gene complement(3385224..3391641) /locus_tag="TCM_043004" /note="dbxref CacaoGD:Thecc1EG043004" mRNA complement(join(3385224..3385326,3387041..3387156, 3387283..3387917,3391137..3391641)) /locus_tag="TCM_043004" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026041t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" mobile_element 3385370..3386027 /note="source:INTACT642F_F365_scaffold_5-int 1 640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3386282..3386684) /note="source:INTACT444_F216_scaffold_4-int 1492 1880" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(3387048..3387156,3387283..3387863)) /locus_tag="TCM_043004" /note="paralog of Thecc1EG026041t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18407.1" /translation="MMKKRGREVRLAGCVRTLPGTSLTCQTRRIRVWQDSGTCPWVPR DKAMGRAPSRTRESGIKERGHCSISGGGEEPATKIPAATQKFHKKKSKRDIQKRTEKE KVCSRKSSPTREGARPSMPPDLSPEGRADPGEERRYRLGRPTVREPVAPPDLSPVGES RLDPRRKEEFAGARRGPDHRRHQICRRKEECRENSRTFKTTAFWLKKAEYLGHAHGLS AGLMRTGLSRA" gene 3387751..3392122 /locus_tag="TCM_043005" /note="dbxref CacaoGD:Thecc1EG043005" mRNA join(3387751..3387792,3390865..3392122) /locus_tag="TCM_043005" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022367t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" mobile_element complement(3387753..3387872) /note="source:INTACT444_F216_scaffold_4-int 17582 17697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3387821..3387898 /note="source:INTACT642F_F365_scaffold_5-int 879 971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3388568..3388836 /note="source:scaffold_5_CACTA_0603 5849 6100" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3389428..3389584) /note="source:scaffold_5_CACTA_0603 6449 6631" /mobile_element_type="transposon:TIR/CACTA" CDS 3390887..3391402 /locus_tag="TCM_043005" /note="paralog of Thecc1EG022367t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18408.1" /translation="MPRRIKELVVISNSSCLNNGDKRIWALSPFSISWTMWLFRNDVV FQNASWDNKQVWNLIHLQTATWANANWPSQHGSILDMYIHPSCPTTQTNGPKTRVAIL KFNVDGAANDSTRDADIGGILRSENGVVQARFSKKYWHWGLKSCRTSCNSRSFHYLCL LSLGWKFLTCH" gene 3392138..3406602 /locus_tag="TCM_043006" /note="dbxref CacaoGD:Thecc1EG043006" mRNA join(3392138..3393018,3393575..3393814,3394058..3394341, 3394632..3395263,3395836..3395930,3397510..3397910, 3398663..3398709,3404480..3404517,3405879..3406602) /locus_tag="TCM_043006" /product="Ankyrin repeat-containing-like protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g25430.1.4" /inference="similar to AA sequence:ricco:29844.m003169" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8910t1_C2" CDS join(3392322..3393018,3393575..3393814,3394058..3394341, 3394632..3395263,3395836..3395930,3397510..3397910, 3398663..3398709,3404480..3404517,3405879..3406285) /locus_tag="TCM_043006" /note="dbxref ricco:29844.m003169" /codon_start=1 /product="Ankyrin repeat-containing-like protein" /protein_id="EOY18409.1" /db_xref="TAIR:AT4G03500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RTE9" /translation="MEGLANQQDNMEIMDSSLYYKAARGEIDAFKQHPKPLNQLVTPI DKNTILHIHITSRCRFSSYPSYYYLHVKREVLSFDPSETSSVNFVKDVLRICPDLLNQ PNAKDETLLHMAAKHGHEDIVKIIAEENERILQEDQEAARLMLRMVNKVKDTALHEAV RYGHLDVVKELVKRDGEFSYGANDCCETPLYLAAEKGFSMAVDQMLEACKSPAFQGPG ERTALHAAVLCKDEEMTRKIVGKMRFLATKADKQGWVPLHYAAQSGCLAIVKILLEAD TSAAYIANKTEEKTPLHLAAQNGQTYTMEELISRCPGCWEQVDAKGRNVLHYAVASDN KFAVYTILDDTSLSNLINEKDRDGNTPLHQHVTSYNYLKYFIGHPKVDRHAFNNRNLN PLDVILSQDGLWGNQWSFGLIISHTLFENQNNTMSQKKSKKALETMGTKSGQRIVDRE ESRGENSSQAENEMIAVIKEAREAHLVVATLIATVTFAAGFTLPGGYKSDENDPEQGH AILTKDLAFKVFVISDTIALMLSSSAVFFHMFMAHETDKTVLISLFKLALNLTINAMA AMVVAFITGTYAVLSHCLGLAIAATALCCPFFFIYIYYLTGRLLYKLDLASIQRSSGW ACYASEEQSTKQRHPSQKEGREYHLGLLDVNAVNRSNLSALDMLLLFPSEAGDREIMD ILSGAGALRARDVNLSPMASLDSRTLSETNHLQPKELEYFKFKKGRDSPSEARGTLLI IAALVASATFQVAFNPPGGACKIIISQTKMIVIAPPSATNILQRGLWLGAVLQWNAEE RTAGILIVLVFHQVSTTGWINIDCGNDALVIGDNGLPWSTDEEFTKAGKNKRIPERVL THTEMATLRYFPNPSDQNCYTLPTDPKVPRYLIRAGFVYGNYDGLDHPPTFDLEVDGK KWSTVTTTSSTITPVYQEVMHATRGSSSVTCA" gene 3398461..3400234 /locus_tag="TCM_043007" /note="dbxref CacaoGD:Thecc1EG043007" mRNA join(3398461..3399138,3399217..3400234) /locus_tag="TCM_043007" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.91 coverage" CDS join(3398968..3399138,3399217..3399327) /locus_tag="TCM_043007" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18410.1" /translation="MEPSMELEPLVQLPSLSMKDDHATNISPQPKTALSATPLLPATH EELHCQSLIIKRYVCSCTELQLPYENKKGFSSPNCYRNLLEASLTPPKG" mobile_element 3400710..3400730 /note="source:CACAO_on_SS_E90_scaffold_6 3560 3577" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3400731..3404056) /note="source:CACAO_M_E85254_F82_scaffold_10 1 3326" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3407068..3407761 /locus_tag="TCM_043008" /note="dbxref CacaoGD:Thecc1EG043008" mRNA 3407068..3407761 /locus_tag="TCM_043008" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene23366.2" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc2323t1" CDS 3407276..3407662 /locus_tag="TCM_043008" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18411.1" /translation="MTVDFPPQSTPQSAYFVFYFTEMAIRPSPSDTRVVDVYVNGVRK ATVAVEVKQCKVVTVYPEILVDPTANVTLAAADSSTLPPIISAMEVFTTVDHVQDHDK GFTVGAYDPLILAFVILIHVFVVRQY" gene complement(3407785..3411298) /locus_tag="TCM_043009" /note="dbxref CacaoGD:Thecc1EG043009" mRNA complement(3407785..3411298) /locus_tag="TCM_043009" /product="Kinase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041936t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22010.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage" CDS complement(3408274..3410742) /locus_tag="TCM_043009" /note="paralog of Thecc1EG041936t1" /codon_start=1 /product="Kinase, putative" /protein_id="EOY18412.1" /db_xref="Phytozome:POPTR_0010s22010.1" /db_xref="TAIR:AT3G46290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6ZRT9" /translation="MENSGNLGLLVRISSIFCLVCLSVGFKPIDNYLIDCGSFKNRSE GQRVFIADNSSSSSYTLTTPQHIFANSVSNSISLYYDAALYQTARIFSGPSHYNFSIK EQGRHWIRLHFFPFVFENYNMSNAKFSVSAQNFTLIRELQLGNSSVVKEYCLNITSNK LVLTFNPAAKSFAFINALEVFSIPENLIPKEARTIDPKGDNRTLWEQALETVARVDMG NATVLPQNDTLWRLWVSDDAYLIDKNLGSFVSNVKAVNFTGGLMTEDIAPASVYGTAT RLNYDDPRLKANLTWSFDVNPGFDYLVRLHFCDIVSNSTQQGIFLHIFLDTQLVGHLD LGSKTSNVLGVPYFMDVCIKASARHKLNVSVGSSTIVDYPSVILNGLEIMKINNARGS LDVPDLVSSRSSKMKVVVMVGLAVGSFVVVVVLAAVLFLFRRRRRKPVQETEEHFSMN TGQIVHTTGTKYSNGTAIFSSSKIGYRFPFMAILEATDNFSENLVIGVGGFGKVYKGV LRDETEVAVKRGAPQSNQGLVEFRTEIEMLSQFRHRHLVSLIGYCDDQNEMIIIYEYM KNGTLKNHLYGSNLPGLSWRQRLEICIGSAKGLHYLHTGSAKAIIHRDVKSANILLDK TFMAKVADFGLSKTGPDIDQTHVSTAVKGSFGYLDPEYLTRQQLTEKSDVYSFGVVLL EVLCGRPVIDPSLPREKVNLVDWATKSYRNGKLEEVVDPILVGEIKPDSLRKYWEITE KCLQEHGIHRPSMGDVLWNLESALQLQGNEQTPNHNGQLSSQASHVSRLETGLEFSRT GSVSDLAGISMSTVFAQMVREEMR" gene 3415593..3421247 /locus_tag="TCM_043010" /note="dbxref CacaoGD:Thecc1EG043010" mRNA join(3415593..3416189,3416911..3417156,3417250..3417675, 3417787..3417981,3418068..3418222,3418727..3419893, 3420222..3420255,3420895..3421247) /locus_tag="TCM_043010" /product="Pre-mRNA-splicing factor 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22020.1" /inference="similar to AA sequence:Phytozome:GSVIVT01032624001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04325t00001" mRNA join(3415593..3416189,3416911..3416961,3417038..3417156, 3417250..3417675,3417787..3417981,3418068..3418222, 3418727..3419893,3420222..3420255,3420895..3421247) /locus_tag="TCM_043010" /product="Pre-mRNA-splicing factor 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22020.1" /inference="similar to AA sequence:Phytozome:GSVIVT01032624001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b041520t1a2; inference alignment:Newbler:10:TSA:cgbaB_g01599t00002" CDS join(3415809..3416189,3416911..3417156,3417250..3417675, 3417787..3417981,3418068..3418222,3418727..3419612) /locus_tag="TCM_043010" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pre-mRNA-splicing factor 3 isoform 1" /protein_id="EOY18413.1" /db_xref="Phytozome:GSVIVT01032624001" /db_xref="TAIR:AT1G28060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0S1" /translation="MDKDKPATKRSRDRDDKHHRSHHRDSHRRSDHKSSSSRRDERER SFEREGSRDRAAEKYREGSYEEVEAKKKRKEREESEEGGEKRAKVGEGNREEKRERRR FGDKVKEEEEIEFSNVANGGEPVQNGAAQASLPRTGHPLSTKVPSISTAENKAYSITG SHEVTGSSTDGSSAAGKSGGNLSLDALAKAKKALQMQKELAEKLKKIPSLNRGPSSSS GVTTGTVQGPASSVTYAIASGPSSSAVLPPTSVAAASVKQPAGGMASVPGLASIPNLE AVKRAQELAAKMGFRQDPQFAPLINLFPGQVQTDVPVPQKPTKAPVLRVDALGREIDE HGNIINVTKPSNLSTLKVNINKQKKDAFQILKPELDVDPESNPHFDSRMGIDKNKLLR PKRMTFQFVEEGKWSKDAEIIKLKSQFGEAKAKELKAKQAQLAKAKADINPNLIEVSE RIITKEKPKDPIPEIEWWDLPILVSGSYGDITDGVVNEDKLKMEKITIYVEHPRPIEP PAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKLSNLMKV LGSEATQDPTKLEMEIHSAAAEREQAHVDRNIARKLTPAERREKKEKKLFDDPNTVET IVSVYKINDLSHPKTRFKVDVNAQENRLTGCAVISEGISVVVVEGGSKSIKRYGKLML RRINWTEAVKEEDKDGDEDEEKPPNKCVLVWQGSVAKPSFSKFSVHECITEAAAKKVF ADAGVAHYWDLAVNFSENEFDF" CDS join(3417115..3417156,3417250..3417675,3417787..3417981, 3418068..3418222,3418727..3419612) /locus_tag="TCM_043010" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pre-mRNA-splicing factor 3 isoform 2" /protein_id="EOY18414.1" /db_xref="Phytozome:GSVIVT01032624001" /db_xref="TAIR:AT1G28060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0S1" /translation="MQKELAEKLKKIPSLNRGPSSSSGVTTGTVQGPASSVTYAIASG PSSSAVLPPTSVAAASVKQPAGGMASVPGLASIPNLEAVKRAQELAAKMGFRQDPQFA PLINLFPGQVQTDVPVPQKPTKAPVLRVDALGREIDEHGNIINVTKPSNLSTLKVNIN KQKKDAFQILKPELDVDPESNPHFDSRMGIDKNKLLRPKRMTFQFVEEGKWSKDAEII KLKSQFGEAKAKELKAKQAQLAKAKADINPNLIEVSERIITKEKPKDPIPEIEWWDLP ILVSGSYGDITDGVVNEDKLKMEKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKK LRTQRRLAREKDRQEMIRQGLIEPPKPKVKLSNLMKVLGSEATQDPTKLEMEIHSAAA EREQAHVDRNIARKLTPAERREKKEKKLFDDPNTVETIVSVYKINDLSHPKTRFKVDV NAQENRLTGCAVISEGISVVVVEGGSKSIKRYGKLMLRRINWTEAVKEEDKDGDEDEE KPPNKCVLVWQGSVAKPSFSKFSVHECITEAAAKKVFADAGVAHYWDLAVNFSENEFD F" mobile_element 3421252..3421866 /note="source:INTACT687_F13_scaffold_3-int 1297 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3421953..3422058) /note="source:scaffold_2_CACTA_0248 14067 14175" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3421965..3422068 /note="source:INTACT383F_F354_scaffold_3-int 2532 2636" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(3422255..3422300) /note="source:scaffold_9_CACTA_0943 9094 9139" /mobile_element_type="transposon:TIR/CACTA" gene 3423876..3426988 /locus_tag="TCM_043012" /note="dbxref CacaoGD:Thecc1EG043012" mRNA 3423876..3426988 /locus_tag="TCM_043012" /product="ABC-2 type transporter family protein" /inference="alignment:exonerate-protein:2:frave:gene23360" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022035t1" /inference="similar to AA sequence:ricco:29758.m000676" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc299t1" mobile_element complement(3424065..3424136) /note="source:CACAO_M_E52955_F369_scaffold_8 966 1017" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 3424341..3426572 /locus_tag="TCM_043012" /note="dbxref ricco:29758.m000676; paralog of Thecc1EG022035t1" /codon_start=1 /product="ABC-2 type transporter family protein" /protein_id="EOY18415.1" /db_xref="TAIR:AT3G55090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUT0" /translation="MSRVVAESISPDNNTSSQFFPHSMELVSGEFSTAAGASPTLGQL LKHVGDARKEATGDETPVHEILVDVTQPRPMPFVLSFNNLSYSVKVSRKMALPGFLRQ RTSSAASSGNPLAADRYFNKTKTLLNDISGEARDGEILAVLGASGSGKSTLIDALANR IAKGSLQGNVTLNGEVLESRMLKVISAYVMQDDLLYPMLTVEETLMFAAEFRLPRTLS KSKKKMRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDE PTSGLDSTSAFMVVKVLQRIAQSGSIVIMSVHQPSYRILGLLDRLIFLSRGQTVYSGS PTSLPLYFSEFGHPIPENENRTEFALDLIRELEGSPGGTKSLVEFNKSWQNTKHPIYT EPDRLGLSLKDAISASISRGKLVSGASNDVTSTSMVPRFANPFWKEMVVLSNRSILNS RRMPELFGTRFGAVMVTGFILATVFWRLDNSPRGVQERIGFFAFAMSTTFYTCANALP DFLQERYIFMRETAYNAYRRLSYVISNALVALPGLIFLSLAFAATTFWAVGLDGGFSG FLFYFLIMFGSFWSGCSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPA YWIWFHYLSLIKYPYEAVLQNEFDHPTKCFVRGIQIFDNTPLAAVPGPMKVRLLQSLS NTLGMTITSSTCLTTGVDILKQQGATDLSKWNCLWITVAWGFLFRILFYFSLLLGSKN KRS" mobile_element complement(3427927..3428090) /note="source:CACAO_MITE164_scaffold_10 1 164" /mobile_element_type="transposon:TIR/MITE" gene 3430461..3431345 /locus_tag="TCM_043013" /note="dbxref CacaoGD:Thecc1EG043013" mRNA 3430461..3431345 /locus_tag="TCM_043013" /product="FKBP-type peptidyl-prolyl cis-trans isomerase" /inference="alignment:exonerate-protein:2:frave:gene23360" /inference="similar to AA sequence:ricco:29758.m000674" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4138t1" CDS 3430606..3431217 /locus_tag="TCM_043013" /note="dbxref ricco:29758.m000674" /codon_start=1 /product="FKBP-type peptidyl-prolyl cis-trans isomerase" /protein_id="EOY18416.1" /db_xref="TAIR:AT3G12345.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LCG9" /translation="MSAALPPPASSPKLTTTSFPSPRSLHQAPSKLQFSNIPRATPDS DSSTEPELSPSSDSSTSPDSDPFESRLSQVRLRYRSGTGKKAERRKSKKTGSVSGSTS SSSSSIYLPPVPLKETISNGVKVDFGFSPYSERINGRIAILGLTALVLVELATGKSVI SYHTPAIILIQIYFVAAVGALFVKYEKEKVSVWPPSQSSSPKN" gene complement(3431394..3433248) /locus_tag="TCM_043014" /note="dbxref CacaoGD:Thecc1EG043014" mRNA complement(3431394..3433248) /locus_tag="TCM_043014" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(3431626..3432720) /locus_tag="TCM_043014" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18417.1" /translation="MTHSRQGSAPKDTRRRLGKQDEEYRQRHSSQMHTSSENNQDEDF SEGHSPRMEMSSENKNQQQPHTNGAPFWRGDPSKDIHPKESNQSSGHSQQQTTVTSPQ GYPPIDDQSSYPLHQQQSSTKISTSQEYNSKDDSLPKTQSAYHTLQQQLSAGATSVQE QPSKTDSSYNPQHQLPSGRVYSHPKDDSPQRSNQSSYHSTQQSYPVSDPPTNNHPRQS NQSSYQSRQQPSPVPTPQRCDLSEDSYTVRDQNSEHLQQQQQSDCLQGEPPKQVHPPK HSAIPMTVPSNTSCMQQDKMNDNDPHRSQTPSSKDPSAQGYAAPPKAKEDENVATQKY VATPKVESTPRNIAVPRTNLKPPSKWCCCL" gene complement(3433649..3434641) /locus_tag="TCM_043015" /note="dbxref CacaoGD:Thecc1EG043015" mRNA complement(3433649..3434641) /locus_tag="TCM_043015" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage" CDS complement(3433839..3434345) /locus_tag="TCM_043015" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18418.1" /translation="MYRMSHCSQEETSKDAHQWNQDEDYSSDKNQQLQQPLLVSKDVH PTSYQSFHRPQQRQTSDGFIEEPPMQVYLSKRCPTTPTTGHSNTRSAQSPSVKAHSAQ DPSVAVTKAEKLPPNVSTPKAEIPPGTVDSTETLWCIVKRTTPKNIAVRRTPTSSPPS RCSCCCIL" gene complement(3435281..3438837) /locus_tag="TCM_043016" /note="dbxref CacaoGD:Thecc1EG043016" mRNA complement(join(3435281..3435587,3435884..3436322, 3436586..3436663,3436799..3436858,3437020..3437103, 3438333..3438837)) /locus_tag="TCM_043016" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" mobile_element complement(3435466..3435637) /note="source:INTACT681_F299_scaffold_3-int 79 237" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(3435952..3436322,3436586..3436663, 3436799..3436858,3437020..3437103,3438333..3438768)) /locus_tag="TCM_043016" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18419.1" /translation="MSHSPQESPPKDAYPESGKPPTEVHSPQESPPKDAYPESGKPPA KVHSPQESPPKDAYPESGRPPAVVLPVHPNIPPTTKEYPIPSGADVPNIAEPVVAYPD PSYHPVQANVSSKAGNPPGSLSASNPPDGYPQAPASPKVTPSSEKEIKFDSCVGILFL SCYDCELEQLPHPADAKSTGVSLSEFLYNGNLEEHLTRNFLLGKRLLVTGKSSNKNQK PVEIGEFQEGKTMSRSFQGSIPEGVDQPSRDAVEGPEEMISYQNQAPQHLQSQTDQAS SELVSGEQHRPNDNQPQRSALASPTDTGEPVAAAPKMVLHPRPLPPSPEPNRRHPPSR RCSCCSIL" mobile_element complement(3437544..3437987) /note="source:INTACT14_F108_scaffold_9-int 1 485" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3440441..3441667) /locus_tag="TCM_043017" /note="dbxref CacaoGD:Thecc1EG043017" mRNA complement(3440441..3441667) /locus_tag="TCM_043017" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(3440556..3441194) /locus_tag="TCM_043017" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18420.1" /translation="MSDSPEGSPLKNSILLSGNTAEGYKEEDSYQGRNQKQKQQQPPL SAGNCPDQHHPSDFSEETAQEQTAVMVPSQPSANWVSSKQDDCYITPQKQLLLPSKNS HPGPSSQSSYREPQQNPASGNVSYEEYRAKEEQEECNSSSTDPKTGFPKSWPKVSPPP AKVTSPPVELPLPAKDLSPLSNEAYPPTLPRTVLPPSPPPPPPRCCGCCIIL" mobile_element 3441684..3444449 /note="source:INTACT501_F232_scaffold_3-int 58 2877" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3444446..3444979) /note="source:CACAO_Again_on_S_E287_scaffold_10 244 779" /mobile_element_type="transposon:TIR/hAT" mobile_element 3444973..3445703 /note="source:CACAO_Again_on_S_E52_scaffold_2 1 743" /mobile_element_type="transposon:TIR/hAT" mobile_element 3445700..3447086 /note="source:INTACT501_F232_scaffold_3-int 2861 4255" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3448201..3449836) /locus_tag="TCM_043019" /note="dbxref CacaoGD:Thecc1EG043019" mRNA complement(3448201..3449836) /locus_tag="TCM_043019" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS complement(3448555..3449694) /locus_tag="TCM_043019" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18421.1" /translation="MRKEMSSSLQGATAKDGSPGDNLPRESSQSYSYPAQKKQQFSRG YPSFSQQSQPSVPVLPPRQDPPKIDFQPSSSQASDKTKQLQPLNGVPDHQRSNLQPQQ QQPSVRGLPLPENPPKGNYHPPSFQTSDHVLEPSNGIPSQGYSTKDNHHLLSDQSSNQ PPSKQNPGKNVHHPSNQTSHRYQPRQPPNEVPSGIHLSRDHLQSNQPQTKQPPNGVLS EEQHPSKDKHPPTDKKSSNVYSQQDLPSALPPPTKTNLPVPSTAQGIFPKDLPSALPP PTKTNLPVPSTAQGIFPKKQAPIFQADPPLQPQKIEYPIENYAEIDAHGKVTGNDAPV LAFPDPSCLPERYLSQLPLYVPPPPPPPPPPPPPPPPRTCCCSIL" gene complement(3451066..3462546) /locus_tag="TCM_043020" /note="dbxref CacaoGD:Thecc1EG043020" mRNA complement(join(3451066..3451866,3452389..3452624, 3452737..3452870,3452995..3453125,3454202..3454261, 3454391..3454531,3454642..3455133,3455300..3455480, 3455621..3455718,3456373..3456474,3457511..3457948, 3459998..3460858,3461982..3462054,3462244..3462546)) /locus_tag="TCM_043020" /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032627001" /inference="similar to AA sequence:ricco:29758.m000673" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2094t4" mRNA complement(join(3451334..3451868,3452389..3452625, 3452737..3452870,3452995..3453128,3454202..3454261, 3454391..3454531,3454642..3455133,3455300..3455477, 3455621..3455718,3456373..3456474,3457511..3457948, 3459998..3460858,3461982..3462054,3462244..3462366)) /locus_tag="TCM_043020" /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032627001" /inference="similar to AA sequence:ricco:29758.m000673" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2094t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2094t4" mRNA complement(join(3451334..3451866,3452388..3452625, 3452737..3452870,3452995..3453128,3454202..3454261, 3454391..3454531,3454642..3455133,3455300..3455480, 3455621..3455718,3456373..3456474,3457511..3457948, 3459998..3460858,3461982..3462054,3462244..3462366)) /locus_tag="TCM_043020" /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032627001" /inference="similar to AA sequence:ricco:29758.m000673" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2094t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2094t4" mRNA complement(join(3451457..3451866,3452389..3452624, 3452737..3452870,3452995..3453125,3454202..3454261, 3454391..3454531,3454642..3455133,3455300..3455477, 3455621..3455718,3456373..3456474,3457511..3457948, 3459998..3460858,3461982..3462054,3462244..3462537)) /locus_tag="TCM_043020" /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032627001" /inference="similar to AA sequence:ricco:29758.m000673" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc184t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2094t4" CDS complement(join(3451765..3451866,3452389..3452624, 3452737..3452870,3452995..3453125,3454202..3454261, 3454391..3454531,3454642..3455133,3455300..3455477, 3455621..3455718,3456373..3456474,3457511..3457948, 3459998..3460858,3461982..3462041)) /locus_tag="TCM_043020" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29758.m000673" /codon_start=1 /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 2" /protein_id="EOY18423.1" /db_xref="TAIR:AT2G39340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AFK9" /translation="MMNQATNTQTLASLDPNSVESRYVVNASQGQTSSYVPSTAGSEA ASWNMYRVDNHSVENGSFSNSTYHHVQQTEPSTRTVQDGSNAASLATSSSLGTTNAQP DYSGYNSYSNSTDPYSYGSTGYQGYYNGYQQQPNPSYSQPVGAYQNTGAPYQPLSSFP NTGSYAGPASYSSTYYNPGDYQTAGGYPSSGYSHQTTTWNEGNYSNYTTHQYSNYTPD TTGAYASGNAATNSLHYQQHYKQWSDYYNPTEVSCAPGTENLSIASKSTQVSQVPGVS GGYATSNSQAPPSFTPSWRPEPSSSQTPSLQPGATVTGGYDSYWKHGASSFQNQHPTP VQQHFQKALDSKPSYDNFQEQQKTACPQGLNLQYPVAQQSSQSYQPPLQTVQSVDTRR VSKVQIQTNPRIASNLPLGLPKMDKDGSNNNTTAKPAYISVSLTKPIEKVLPNDAADS VLKVGMFPKSLKNYVERALGQCEDEKQMAACQAVMKEIITKATNDGTLHTRDWDAEPL FPIPNADMVDKNNLQNPIPVSAIPKYKSPTKRSKSRWEPLPEEKLLDKLDPVNSYAAK YSSWVHVNEKDRKPAGASSEGKTDIMNSIRFPLMEQKSASKTVQRPVKRQRLADGNAA DNGDASSDSDKEQNLTAYYSGAIALANTPEERKRRENRSKRFEKVQGNRAQINHFKAK NAGSGNLYARRASAMVLSKNFEDGGSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAPD PSTVRPEEVLEKALLTVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTVKVYETHARL SLEVGDLPEYNQCQSQLKILYGEGIEGCHMEFSAYHLLCVIMHSNNNRDLLSSMSRLS DEAKKDKAVQHALAVRAAVTSGNYVMFFRLYKMAPNLNTCLMDLYVEKMRYKAVGCMS RSYRPQVPVSYIAQVLGFGSGMPTNEGSDEKDSDGLEECVDWLKAHGACLVADSNGEM QLDAKASSSSLYMPEPEDAVAHGDASLAVNDFLTRTSS" CDS complement(join(3451765..3451866,3452389..3452624, 3452737..3452870,3452995..3453125,3454202..3454261, 3454391..3454531,3454642..3455133,3455300..3455480, 3455621..3455718,3456373..3456474,3457511..3457948, 3459998..3460858,3461982..3462041)) /locus_tag="TCM_043020" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29758.m000673" /codon_start=1 /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 1" /protein_id="EOY18422.1" /db_xref="TAIR:AT2G39340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AFK9" /translation="MMNQATNTQTLASLDPNSVESRYVVNASQGQTSSYVPSTAGSEA ASWNMYRVDNHSVENGSFSNSTYHHVQQTEPSTRTVQDGSNAASLATSSSLGTTNAQP DYSGYNSYSNSTDPYSYGSTGYQGYYNGYQQQPNPSYSQPVGAYQNTGAPYQPLSSFP NTGSYAGPASYSSTYYNPGDYQTAGGYPSSGYSHQTTTWNEGNYSNYTTHQYSNYTPD TTGAYASGNAATNSLHYQQHYKQWSDYYNPTEVSCAPGTENLSIASKSTQVSQVPGVS GGYATSNSQAPPSFTPSWRPEPSSSQTPSLQPGATVTGGYDSYWKHGASSFQNQHPTP VQQHFQKALDSKPSYDNFQEQQKTACPQGLNLQYPVAQQSSQSYQPPLQTVQSVDTRR VSKVQIQTNPRIASNLPLGLPKMDKDGSNNNTTAKPAYISVSLTKPIEKVLPNDAADS VLKVGMFPKSLKNYVERALGQCEDEKQMAACQAVMKEIITKATNDGTLHTRDWDAEPL FPIPNADMVDKNSNLQNPIPVSAIPKYKSPTKRSKSRWEPLPEEKLLDKLDPVNSYAA KYSSWVHVNEKDRKPAGASSEGKTDIMNSIRFPLMEQKSASKTVQRPVKRQRLADGNA ADNGDASSDSDKEQNLTAYYSGAIALANTPEERKRRENRSKRFEKVQGNRAQINHFKA KNAGSGNLYARRASAMVLSKNFEDGGSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAP DPSTVRPEEVLEKALLTVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTVKVYETHAR LSLEVGDLPEYNQCQSQLKILYGEGIEGCHMEFSAYHLLCVIMHSNNNRDLLSSMSRL SDEAKKDKAVQHALAVRAAVTSGNYVMFFRLYKMAPNLNTCLMDLYVEKMRYKAVGCM SRSYRPQVPVSYIAQVLGFGSGMPTNEGSDEKDSDGLEECVDWLKAHGACLVADSNGE MQLDAKASSSSLYMPEPEDAVAHGDASLAVNDFLTRTSS" CDS complement(join(3452597..3452625,3452737..3452870, 3452995..3453128,3454202..3454261,3454391..3454531, 3454642..3455133,3455300..3455477,3455621..3455718, 3456373..3456474,3457511..3457948,3459998..3460858, 3461982..3462041)) /locus_tag="TCM_043020" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29758.m000673" /codon_start=1 /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 4" /protein_id="EOY18425.1" /db_xref="TAIR:AT2G39340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AFK9" /translation="MMNQATNTQTLASLDPNSVESRYVVNASQGQTSSYVPSTAGSEA ASWNMYRVDNHSVENGSFSNSTYHHVQQTEPSTRTVQDGSNAASLATSSSLGTTNAQP DYSGYNSYSNSTDPYSYGSTGYQGYYNGYQQQPNPSYSQPVGAYQNTGAPYQPLSSFP NTGSYAGPASYSSTYYNPGDYQTAGGYPSSGYSHQTTTWNEGNYSNYTTHQYSNYTPD TTGAYASGNAATNSLHYQQHYKQWSDYYNPTEVSCAPGTENLSIASKSTQVSQVPGVS GGYATSNSQAPPSFTPSWRPEPSSSQTPSLQPGATVTGGYDSYWKHGASSFQNQHPTP VQQHFQKALDSKPSYDNFQEQQKTACPQGLNLQYPVAQQSSQSYQPPLQTVQSVDTRR VSKVQIQTNPRIASNLPLGLPKMDKDGSNNNTTAKPAYISVSLTKPIEKVLPNDAADS VLKVGMFPKSLKNYVERALGQCEDEKQMAACQAVMKEIITKATNDGTLHTRDWDAEPL FPIPNADMVDKNNLQNPIPVSAIPKYKSPTKRSKSRWEPLPEEKLLDKLDPVNSYAAK YSSWVHVNEKDRKPAGASSEGKTDIMNSIRFPLMEQKSASKTVQRPVKRQRLADGNAA DNGDASSDSDKEQNLTAYYSGAIALANTPEERKRRENRSKRFEKVQGNRAQINHFKAK NAGSGNLYARRASAMVLSKNFEDGGSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAPD PSTVRPEEVLEKALLTVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTVKVYETHARL SLEVGDLPEYNQQCQSQLKILYGEGIEGCHMEFSAYHLLCVIMHSNNNRDLLSSMSRL SDEAKKDKAVQHALAVRAAVTSGNYVMFFRLYKMAPNLNTCLMGSLCRENAI" CDS complement(join(3452597..3452625,3452737..3452870, 3452995..3453128,3454202..3454261,3454391..3454531, 3454642..3455133,3455300..3455480,3455621..3455718, 3456373..3456474,3457511..3457948,3459998..3460858, 3461982..3462041)) /locus_tag="TCM_043020" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29758.m000673" /codon_start=1 /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 3" /protein_id="EOY18424.1" /db_xref="TAIR:AT2G39340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AFK9" /translation="MMNQATNTQTLASLDPNSVESRYVVNASQGQTSSYVPSTAGSEA ASWNMYRVDNHSVENGSFSNSTYHHVQQTEPSTRTVQDGSNAASLATSSSLGTTNAQP DYSGYNSYSNSTDPYSYGSTGYQGYYNGYQQQPNPSYSQPVGAYQNTGAPYQPLSSFP NTGSYAGPASYSSTYYNPGDYQTAGGYPSSGYSHQTTTWNEGNYSNYTTHQYSNYTPD TTGAYASGNAATNSLHYQQHYKQWSDYYNPTEVSCAPGTENLSIASKSTQVSQVPGVS GGYATSNSQAPPSFTPSWRPEPSSSQTPSLQPGATVTGGYDSYWKHGASSFQNQHPTP VQQHFQKALDSKPSYDNFQEQQKTACPQGLNLQYPVAQQSSQSYQPPLQTVQSVDTRR VSKVQIQTNPRIASNLPLGLPKMDKDGSNNNTTAKPAYISVSLTKPIEKVLPNDAADS VLKVGMFPKSLKNYVERALGQCEDEKQMAACQAVMKEIITKATNDGTLHTRDWDAEPL FPIPNADMVDKNSNLQNPIPVSAIPKYKSPTKRSKSRWEPLPEEKLLDKLDPVNSYAA KYSSWVHVNEKDRKPAGASSEGKTDIMNSIRFPLMEQKSASKTVQRPVKRQRLADGNA ADNGDASSDSDKEQNLTAYYSGAIALANTPEERKRRENRSKRFEKVQGNRAQINHFKA KNAGSGNLYARRASAMVLSKNFEDGGSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAP DPSTVRPEEVLEKALLTVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTVKVYETHAR LSLEVGDLPEYNQQCQSQLKILYGEGIEGCHMEFSAYHLLCVIMHSNNNRDLLSSMSR LSDEAKKDKAVQHALAVRAAVTSGNYVMFFRLYKMAPNLNTCLMGSLCRENAI" gene complement(3464577..3471186) /locus_tag="TCM_043021" /note="dbxref CacaoGD:Thecc1EG043021" mRNA complement(join(3464577..3466511,3466647..3466744, 3466859..3469857,3469985..3470214,3470662..3471186)) /locus_tag="TCM_043021" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene23357" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8018t4" CDS complement(join(3465382..3466511,3466647..3466744, 3466859..3469857,3469985..3470008)) /locus_tag="TCM_043021" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18426.1" /db_xref="TAIR:AT5G13590.1" /translation="MSVSGNEETGVKPSVGQFSEYSAGIPIKKRRFPLIWTSSQQTED SPSLPTENDSEQKGFSSPLQGSAISNASTVTASSNTGSVLASSNTGSVLASSNTCGVL ASSNISVVGVSSNTSGVAARSNTSGVAGSSDASGVATSLNVNAGSIAASSNAVSVAAS SNAVSVAASSNTSCVAASSNAVSVAVSSNASCVAANSHASSVSAGSNASSTVETSKPN SVAASLSNASSIAASVSSFSDASEKTVPEKEKRSYDGTNGSMVQGNNNLLRVKLEEQS FPVNSRSLADIDSKGKLVATGESDNILRKSAKSELDLVGGDSLTLNIGKDVYSQQNVD GQFRSELPTVSGNPGLSLALGEHLVSAIAGGNNERDCLKQEKAEPVSLNLSLSKGECS TQLRSNNVQPNSIGANMLADRSNWDLNTTMDAWEGPASNDGASQKTTHMDAIKPVLCS GGMTGTSMPTQQQRVIKIAMSSALSSQQYNTEDSLRLGLTTPYLHLNSNEKPSSTSAK EDLREVTANINLPAESVPVSNLTVSNFKPVKSEPLDESIKTNSAAVKADPKGLLNIVP MKHELVDRSSSESSKSSTLKLVDARSVKPEPVHEDNQETSKRMEGSLNQSDEQILHPL NNTTVPTSTDLSLHGDASNHVEHFIQAKETESSGEGQVASKMISSVGHDDNESNISGK IDNSTSENKSVEDPDNCRLKFMAVQPSESRGTVEGSVSDEEKINLSGDILEDSYGSGY ESDGNRDLAPAMDMEHDGRAEDDFEDGEVRETVENTEIEAPVCEGQEAGNGNNGDTGY KNSDSVWFVGDNKPSSSSVSGKETCGEDAGKTSNDSTNECIDTSVNKDSNTEADKEAC LQESSAVEMPSSPTDKKIPKKAMPRKPLDLSEKKDAVEGQDREQTSIQASDSSQGTSV TIGQGADNAQKTESEGKSNSVLPKVEAFLSGDDAGKDVSSAGNRSRIINLSRALNQSS PGRTRSISGRTMQSRGGRERLLDVALEGDKFHPRGRDEVYGDGSHRFSRERHHDQPSR NPRISFMRGRDLDFSSYNNGQDGAYFGPGQGGRKILSDNSSIFAHVHPRRRSPGGRDG PASRGLPMVRRVPRNLSPSRCIGEDGSESVGLRHMRGFADDHTDPMFTRSQPSFEGLD GPFVRGNRDFSSVQRRGLPRIRSKSPTRPRTRSPGPWPSPRRRSPDEFGGPLELPHRR SPIYRVDRIRSPDRPCFAGEMVLRRHGSPPYLSRPSNDLRDMDPGRDHGHPRSGIPNR SPSGRILLRNSRRLDLVDPRERSDGDDYFGGPMPSGRFHELATDGNADERRRYGDRRG PVRPFRPPYSGADSENFHLNAEGGPRSFRFCPEDDPELHERGTLREREFDRRLKNRPG NAPRRTRNIEEEGNFRHGGQVWHDDGFDDMSRVKRKRF" mobile_element complement(3473334..3473426) /note="source:scaffold_5_CACTA_0614 3376 3466" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3473370..3473614) /note="source:CACAO_Helitron_E81_scaffold_3 1217 1455" /mobile_element_type="transposon:Helitron" mobile_element 3473440..3473820 /note="source:scaffold_2_CACTA_0244 14257 14668" /mobile_element_type="transposon:TIR/CACTA" gene complement(3473455..3474956) /locus_tag="TCM_043022" /note="dbxref CacaoGD:Thecc1EG043022" mRNA complement(join(3473455..3474285,3474402..3474956)) /locus_tag="TCM_043022" /product="Histone superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400000792.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021970t2" /inference="similar to AA sequence:frave:gene13944" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4145t1" CDS complement(join(3474269..3474285,3474402..3474708)) /locus_tag="TCM_043022" /note="dbxref frave:gene13944; paralog of Thecc1EG021970t2" /codon_start=1 /product="Histone superfamily protein" /protein_id="EOY18427.1" /db_xref="TAIR:AT5G59970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62805" /translation="MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG VTLQI" mobile_element 3475112..3475197 /note="source:scaffold_9_CACTA_0936 327 412" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3475761..3475947 /note="source:scaffold_7_CACTA_0779 11400 11580" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3476242..3476289 /note="source:CACAO_Mutator_E592_scaffold_3 3621 3668" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3476295..3476388) /note="source:scaffold_4_CACTA_0511 5716 5807" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3477150..3477228) /note="source:scaffold_1_CACTA_0032 2353 2433" /mobile_element_type="transposon:TIR/CACTA" gene 3477281..3485396 /locus_tag="TCM_043023" /note="dbxref CacaoGD:Thecc1EG043023" mRNA join(3477281..3477619,3477983..3478092,3479041..3479104, 3479199..3479309,3479510..3479569,3480119..3480226, 3480768..3480837,3481171..3481211,3481326..3481406, 3481606..3481641,3482578..3482661,3482891..3483018, 3483970..3484058,3484162..3484310,3484777..3484959, 3485050..3485396) /locus_tag="TCM_043023" /product="Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032632001" /inference="similar to AA sequence:Phytozome:GSVIVT01032632001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2080t3" mRNA join(3477384..3477619,3477983..3478092,3479037..3479104, 3479199..3479309,3479510..3479569,3480119..3480226, 3480768..3480837,3481171..3481211,3481326..3481406, 3481606..3481641,3482578..3482661,3482891..3483018, 3483970..3484058,3484162..3484310,3484777..3484959, 3485050..3485342) /locus_tag="TCM_043023" /product="Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032632001" /inference="similar to AA sequence:ricco:29758.m000663" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2080t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2080t3" CDS join(3477503..3477619,3477983..3478092,3479041..3479104, 3479199..3479309,3479510..3479569,3480119..3480226, 3480768..3480837,3481171..3481211,3481326..3481406, 3481606..3481641,3482578..3482661,3482891..3483018, 3483970..3484058,3484162..3484310,3484777..3484944) /locus_tag="TCM_043023" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase isoform 1" /protein_id="EOY18428.1" /db_xref="Phytozome:GSVIVT01032632001" /db_xref="TAIR:AT3G55080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGF2" /translation="MLQGGHRLSKLWRSPTTPLFNLSHRLLIGFKFSSLSQAKELDSL DEEFEEFLPWLERKAGVKISSVLSIGKSAYGRSLFASEIIRSGDCILKVPYSVQIAPD NLLPKIKAALSNKVGTVAKLAIILLVEQKMGQDSEWASYISCLPQHGEIHSTIFWSEY ELDMIRQSSVYQETMNQKSKIEEDFAAVVPALEQFPEIFESFTLKDFMRAYFLVTSRA WESTKGLSLIPFTDFMNHDGVSDSIVLFDEDKKLSEVIADRNYAPGQEVLINYGNFPN ATLLLDFGFTLPYNIHDQVQINFNIPYHDSLREMKLELLQQHSTPKIKDAINCSEDTF IIKEVRSPRGKGKGLPQSLRAFARVLCCTSPDELSDLAMEAAQIDGRLARRPLKDSRR ELLAHQMLLSHITHLMQKYDVAIKSLAPANFPSMSKKFALRRQMAQDLLTGDLRVLKS ASTWLNNYCAALRATIHCQSQ" CDS join(3478086..3478092,3479037..3479104,3479199..3479309, 3479510..3479569,3480119..3480226,3480768..3480837, 3481171..3481211,3481326..3481406,3481606..3481641, 3482578..3482661,3482891..3483018,3483970..3484058, 3484162..3484310,3484777..3484944) /locus_tag="TCM_043023" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29758.m000663" /codon_start=1 /product="Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast, putative isoform 2" /protein_id="EOY18429.1" /db_xref="TAIR:AT3G55080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGF2" /translation="MAGRSLFASEIIRSGDCILKVPYSVQIAPDNLLPKIKAALSNKV GTVAKLAIILLVEQKMGQDSEWASYISCLPQHGEIHSTIFWSEYELDMIRQSSVYQET MNQKSKIEEDFAAVVPALEQFPEIFESFTLKDFMRAYFLVTSRAWESTKGLSLIPFTD FMNHDGVSDSIVLFDEDKKLSEVIADRNYAPGQEVLINYGNFPNATLLLDFGFTLPYN IHDQVQINFNIPYHDSLREMKLELLQQHSTPKIKDAINCSEDTFIIKEVRSPRGKGKG LPQSLRAFARVLCCTSPDELSDLAMEAAQIDGRLARRPLKDSRRELLAHQMLLSHITH LMQKYDVAIKSLAPANFPSMSKKFALRRQMAQDLLTGDLRVLKSASTWLNNYCAALRA TIHCQSQ" gene 3486109..3490166 /locus_tag="TCM_043024" /note="dbxref CacaoGD:Thecc1EG043024" mRNA join(3486109..3486238,3487045..3487158,3487496..3487746, 3487894..3487989,3488402..3488601,3488712..3488792, 3489059..3489463,3489955..3490166) /locus_tag="TCM_043024" /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040686" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022039t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040686" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b041533t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g03527t00001" mRNA join(3486109..3486238,3487045..3487158,3487707..3487746, 3487894..3487989,3488402..3488601,3488721..3488792, 3489059..3490166) /locus_tag="TCM_043024" /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040686" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022039t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040686" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:PASA:2:TSA:puevd3b041533t1a3; inference alignment:Newbler:10:TSA:cgbaP1_g03527t00001" mRNA join(3486119..3486238,3487045..3487158,3487707..3487746, 3487894..3487989,3488402..3488601,3488712..3488792, 3489059..3489708) /locus_tag="TCM_043024" /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040686" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022039t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040686" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01798t00002; inference alignment:Newbler:10:TSA:cgbaP1_g03527t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4199t2" mRNA join(3486121..3486238,3487045..3487158,3487707..3487746, 3487894..3487989,3488402..3488601,3488706..3488792, 3489059..3489784) /locus_tag="TCM_043024" /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040686" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022039t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040686" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03527t00001" CDS join(3487052..3487158,3487707..3487746,3487894..3487989, 3488402..3488601,3488706..3488792,3489059..3489443) /locus_tag="TCM_043024" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022039t1" /codon_start=1 /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 1" /protein_id="EOY18430.1" /db_xref="Phytozome:PGSC0003DMP400040686" /db_xref="TAIR:AT3G53500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10N19" /translation="MPRYDDRRSGTRLYVGHLSSRTRSRDLEDMFSRYGRIRDVDMKR DYAFVEFSDPRDADDARYALNGRDLDGSRIIVEFAKGVPRGPGGSRDYPGRGGPTPGS GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRPRSYSRSPSP RRGRSRSRSYSRGRSDSRSRSPVKRERSFERDDRRSRSPKRHRGSPSPSKGRKHSPAP DERSPRERGSPSPRDRRHTNGSDYSASPRGRSRSPDREADVEGRSYRSSAKENGHSRS PSPLPRDDRSPIYDDDENHASPRRSESN" CDS join(3487052..3487158,3487707..3487746,3487894..3487989, 3488402..3488601,3488712..3488792,3489059..3489443) /locus_tag="TCM_043024" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022039t1" /codon_start=1 /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 3" /protein_id="EOY18432.1" /db_xref="Phytozome:PGSC0003DMP400040686" /db_xref="TAIR:AT3G53500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10N19" /translation="MPRYDDRRSGTRLYVGHLSSRTRSRDLEDMFSRYGRIRDVDMKR DYAFVEFSDPRDADDARYALNGRDLDGSRIIVEFAKGVPRGPGGSRDYPGRGGPTPGS GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRPRSYSRSPSPRR GRSRSRSYSRGRSDSRSRSPVKRERSFERDDRRSRSPKRHRGSPSPSKGRKHSPAPDE RSPRERGSPSPRDRRHTNGSDYSASPRGRSRSPDREADVEGRSYRSSAKENGHSRSPS PLPRDDRSPIYDDDENHASPRRSESN" CDS join(3487052..3487158,3487707..3487746,3487894..3487989, 3488402..3488601,3488721..3488792,3489059..3489443) /locus_tag="TCM_043024" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG022039t1" /codon_start=1 /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 4" /protein_id="EOY18433.1" /db_xref="Phytozome:PGSC0003DMP400040686" /db_xref="TAIR:AT3G53500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10N19" /translation="MPRYDDRRSGTRLYVGHLSSRTRSRDLEDMFSRYGRIRDVDMKR DYAFVEFSDPRDADDARYALNGRDLDGSRIIVEFAKGVPRGPGGSRDYPGRGGPTPGS GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSYSRSPSPRRGRS RSRSYSRGRSDSRSRSPVKRERSFERDDRRSRSPKRHRGSPSPSKGRKHSPAPDERSP RERGSPSPRDRRHTNGSDYSASPRGRSRSPDREADVEGRSYRSSAKENGHSRSPSPLP RDDRSPIYDDDENHASPRRSESN" CDS join(3487723..3487746,3487894..3487989,3488402..3488601, 3488712..3488792,3489059..3489443) /locus_tag="TCM_043024" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022039t1" /codon_start=1 /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 2" /protein_id="EOY18431.1" /db_xref="Phytozome:PGSC0003DMP400040686" /db_xref="TAIR:AT3G53500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10N19" /translation="MKRDYAFVEFSDPRDADDARYALNGRDLDGSRIIVEFAKGVPRG PGGSRDYPGRGGPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS PKKLRPRSYSRSPSPRRGRSRSRSYSRGRSDSRSRSPVKRERSFERDDRRSRSPKRHR GSPSPSKGRKHSPAPDERSPRERGSPSPRDRRHTNGSDYSASPRGRSRSPDREADVEG RSYRSSAKENGHSRSPSPLPRDDRSPIYDDDENHASPRRSESN" gene complement(3490083..3495396) /locus_tag="TCM_043026" /note="dbxref CacaoGD:Thecc1EG043026" mRNA complement(join(3490083..3490122,3490277..3490538, 3490594..3491059,3491157..3491343,3491692..3491825, 3492736..3492921,3493210..3493332,3493802..3493996, 3494833..3495396)) /locus_tag="TCM_043026" /product="LisH/CRA/RING-U-box domains-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04700.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04700.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07077t00001" mRNA complement(join(3490722..3491059,3491157..3491343, 3491692..3491825,3492736..3492903,3493210..3493332, 3493802..3493996,3494833..3495272)) /locus_tag="TCM_043026" /product="LisH/CRA/RING-U-box domains-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04700.1" /inference="similar to AA sequence:ricco:29758.m000661" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc113t5; inference alignment:Newbler:10:TSA:cgbaB_g07077t00001" mRNA complement(join(3490722..3491059,3491157..3491825, 3492736..3492921,3493210..3493332,3493802..3493996, 3494833..3495272)) /locus_tag="TCM_043026" /product="LisH/CRA/RING-U-box domains-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04700.1" /inference="similar to AA sequence:ricco:29758.m000661" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc113t9; inference alignment:Newbler:10:TSA:cgbaB_g07077t00001" mRNA complement(join(3490722..3491059,3491157..3491329, 3492736..3492921,3493210..3493332,3493802..3493996, 3494833..>3495103)) /locus_tag="TCM_043026" /product="LisH/CRA/RING-U-box domains-containing protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04700.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04700.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc117t1; inference alignment:Newbler:10:TSA:cgbaB_g07077t00001" CDS complement(join(3490958..3491059,3491157..3491343, 3491692..3491825,3492736..3492903,3493210..3493332, 3493802..3493996,3494833..3495171)) /locus_tag="TCM_043026" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29758.m000661" /codon_start=1 /product="LisH/CRA/RING-U-box domains-containing protein isoform 3" /protein_id="EOY18436.1" /db_xref="TAIR:AT3G55070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2V9" /translation="MEIDPLPNGSGSVGTTIPEAAATTTAATAALKTTPSSKLSQLTE SLKLEHQLLRVPFEHYKKTIRANHRAVEKEVSSVISSVADVADCNEPSKEDAVLNLTS LVSRLQGLKRKLEEGSRTENLQAQRCRARLDHLESVDAENLSEWNNVRLKRILVDYML RMSYYDTAMKLAESSNIQDLVDIDVFQEAKKVIDALRNQEVGPALAWCVDNKSRLKKS KLRLQEFIELVRAENHMRAILYARRHLAPWGATHLKELQRVMATLAFRSNTGCAKYKV LFEPKQWDFLVDQFKQEFCRLYGMTLEPLLNIYLQAGLSALKTPYCYEDDCTKEDPLS QDSFRKLALPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALKEMAEKNN GTITCPRTGLVCNYSELVKAYIS" CDS complement(join(3490958..3491059,3491157..3491343, 3491692..3491825,3492736..3492921,3493210..3493332, 3493802..3493996,3494833..3495171)) /locus_tag="TCM_043026" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="LisH/CRA/RING-U-box domains-containing protein isoform 1" /protein_id="EOY18434.1" /db_xref="Phytozome:POPTR_0008s04700.1" /db_xref="TAIR:AT3G55070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2V9" /translation="MEIDPLPNGSGSVGTTIPEAAATTTAATAALKTTPSSKLSQLTE SLKLEHQLLRVPFEHYKKTIRANHRAVEKEVSSVISSVADVADCNEPSKEDAVLNLTS LVSRLQGLKRKLEEGSRTENLQAQRCRARLDHLESVDAENLSEWNNVRLKRILVDYML RMSYYDTAMKLAESSNIQDLVDIDVFQEAKKVIDALRNQEVGPALAWCVDNKSRLKKS KSKFEFQLRLQEFIELVRAENHMRAILYARRHLAPWGATHLKELQRVMATLAFRSNTG CAKYKVLFEPKQWDFLVDQFKQEFCRLYGMTLEPLLNIYLQAGLSALKTPYCYEDDCT KEDPLSQDSFRKLALPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALKE MAEKNNGTITCPRTGLVCNYSELVKAYIS" CDS complement(join(3491237..3491329,3492736..3492921, 3493210..3493332,3493802..3493996,3494833..>3495102)) /locus_tag="TCM_043026" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="LisH/CRA/RING-U-box domains-containing protein isoform 4" /protein_id="EOY18437.1" /db_xref="Phytozome:POPTR_0008s04700.1" /db_xref="TAIR:AT3G55070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94A50" /translation="TTAATAALKTTPSSKLSQLTESLKLEHQLLRVPFEHYKKTIRAN HRAVEKEVSSVISSVADVADCNEPSKEDAVLNLTSLVSRLQGLKRKLEEGSRTENLQA QRCRARLDHLESVDAENLSEWNNVRLKRILVDYMLRMSYYDTAMKLAESSNIQDLVDI DVFQEAKKVIDALRNQEVGPALAWCVDNKSRLKKSKSKFEFQLRLQEFIELVRAENHM RAILYARRHLAPWGATHLKELQRVMATLAFRSNTGCAKYKMTAPRRTHCHRTASGSWH CLCHTPSSTTQS" CDS complement(join(3491622..3491825,3492736..3492921, 3493210..3493332,3493802..3493996,3494833..3495171)) /locus_tag="TCM_043026" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29758.m000661" /codon_start=1 /product="LisH/CRA/RING-U-box domains-containing protein isoform 2" /protein_id="EOY18435.1" /db_xref="TAIR:AT3G55070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2V9" /translation="MEIDPLPNGSGSVGTTIPEAAATTTAATAALKTTPSSKLSQLTE SLKLEHQLLRVPFEHYKKTIRANHRAVEKEVSSVISSVADVADCNEPSKEDAVLNLTS LVSRLQGLKRKLEEGSRTENLQAQRCRARLDHLESVDAENLSEWNNVRLKRILVDYML RMSYYDTAMKLAESSNIQDLVDIDVFQEAKKVIDALRNQEVGPALAWCVDNKSRLKKS KSKFEFQLRLQEFIELVRAENHMRAILYARRHLAPWGATHLKELQRVMATLAFRSNTG CAKYKVLFEPKQWDFLVDQFKQEFCRLYGMTLEPLLNIYLQAGLSALKTPYPYRDCHS LTAYGFIYIYLVTL" gene 3497181..3504489 /locus_tag="TCM_043027" /note="dbxref CacaoGD:Thecc1EG043027" mRNA join(3497181..3497559,3498927..3499386,3499483..3501451, 3501633..3501839,3502533..3503513) /locus_tag="TCM_043027" /product="Intracellular protein transport protein USO1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22140.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22140.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc559t5" mRNA join(3497249..3497559,3498927..3499386,3499483..3501451, 3501633..3501839,3502533..3502864,3504466..3504489) /locus_tag="TCM_043027" /product="Intracellular protein transport protein USO1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22140.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22140.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc559t3; alternateUTRof:Thecc1EG043027t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc559t5" mRNA join(3497249..3497559,3498927..3499386,3499483..3501451, 3501633..3501839,3502533..3502864,3504319..3504342) /locus_tag="TCM_043027" /product="Intracellular protein transport protein USO1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22140.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22140.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc559t1; alternateUTRof:Thecc1EG043027t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc559t5" CDS join(3499028..3499386,3499483..3501451,3501633..3501839, 3502533..3502853) /locus_tag="TCM_043027" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Intracellular protein transport protein USO1, putative isoform 1" /protein_id="EOY18438.1" /db_xref="Phytozome:POPTR_0010s22140.1" /db_xref="TAIR:AT3G55060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM17" /translation="MKKLFFFKSSSSNGNSNAVPSPSADKQVYWENPLDRELNDQLGD KADYSFRSPRRLFGKSGKQISDSPSFSNSSCLRRSRSLSSAAFLVDGLGQQHFSSSND QNRSPNITPHQQYDHSSRRRALTPEKKSKAKRCEVAAVGFERPCSSSFSRMHHDSSGS SSSCSSNVSSKVIDRYIDGEQQQESSKSKNSSQRNNLRNGGGRLPPRVQYTAPSSPTD SVKEKNVSHSFREAKGTRLHFSSKDWVENGLGHESPRKIAKNVVERLSQTHAVPRSSS KEFNHHIPITTEDVYGGYLNRCPDSKLDMLAQKSCVMDEPYANVIGYHEDFSSLEKQN CLSGGSDDGLDSFETEEDADVELQRRSKEAEERVILLSEALAQESFLRDSGFDVSSLI QTIRHLIQEKINLALEVSDLLQSRIAERAFAREELRMARAELESQTKKLEKEKHELQS GLEKELDRRSSDWSFKLEKYQLEEQRLRERVRELAEQNVSLQREVSSFNEKEIENRSI MTYSAEQLKDLTRRVEEISDENQDLRQNLSESQQKYRAAIEDLDCIRRNFEEKEKECK ELQKSTTRLLRTCSEQEKTIEGLREGYSEDIGKMQSMEKNEKQVKKLQMEQMRLTGVE LALRREVESYRLEVGFLRHENIDLLNRLKGNGKDIGALTFKLDKEMRSRVCCLQNQGL SMLNESTHLSSKLIEFIKGRASQLQETHQGLDGQFIVESDVKVQGFKRGIESLTRSLQ TIANLLHEKSSAVGSKCHSACMDPDGSMKLNNQSSEEIIRTELKAETLLTSLLREKLY SKELEVEQLQAELAAGVRGNDILRCEVQNAMDNISCLTHRLKDLELQILKKDDNISHL QNDLKESTKELTILRGILPKVSQERDLIWEEVKQYSEKNMLLNSEVNVLKKKIEALDE DILLKEGQITILKDTLNNNKTFDLLGSPDSTREFLLE" CDS join(3499028..3499386,3499483..3501451,3501633..3501839, 3502533..3502853) /locus_tag="TCM_043027" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Intracellular protein transport protein USO1, putative isoform 1" /protein_id="EOY18439.1" /db_xref="Phytozome:POPTR_0010s22140.1" /db_xref="TAIR:AT3G55060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM17" /translation="MKKLFFFKSSSSNGNSNAVPSPSADKQVYWENPLDRELNDQLGD KADYSFRSPRRLFGKSGKQISDSPSFSNSSCLRRSRSLSSAAFLVDGLGQQHFSSSND QNRSPNITPHQQYDHSSRRRALTPEKKSKAKRCEVAAVGFERPCSSSFSRMHHDSSGS SSSCSSNVSSKVIDRYIDGEQQQESSKSKNSSQRNNLRNGGGRLPPRVQYTAPSSPTD SVKEKNVSHSFREAKGTRLHFSSKDWVENGLGHESPRKIAKNVVERLSQTHAVPRSSS KEFNHHIPITTEDVYGGYLNRCPDSKLDMLAQKSCVMDEPYANVIGYHEDFSSLEKQN CLSGGSDDGLDSFETEEDADVELQRRSKEAEERVILLSEALAQESFLRDSGFDVSSLI QTIRHLIQEKINLALEVSDLLQSRIAERAFAREELRMARAELESQTKKLEKEKHELQS GLEKELDRRSSDWSFKLEKYQLEEQRLRERVRELAEQNVSLQREVSSFNEKEIENRSI MTYSAEQLKDLTRRVEEISDENQDLRQNLSESQQKYRAAIEDLDCIRRNFEEKEKECK ELQKSTTRLLRTCSEQEKTIEGLREGYSEDIGKMQSMEKNEKQVKKLQMEQMRLTGVE LALRREVESYRLEVGFLRHENIDLLNRLKGNGKDIGALTFKLDKEMRSRVCCLQNQGL SMLNESTHLSSKLIEFIKGRASQLQETHQGLDGQFIVESDVKVQGFKRGIESLTRSLQ TIANLLHEKSSAVGSKCHSACMDPDGSMKLNNQSSEEIIRTELKAETLLTSLLREKLY SKELEVEQLQAELAAGVRGNDILRCEVQNAMDNISCLTHRLKDLELQILKKDDNISHL QNDLKESTKELTILRGILPKVSQERDLIWEEVKQYSEKNMLLNSEVNVLKKKIEALDE DILLKEGQITILKDTLNNNKTFDLLGSPDSTREFLLE" CDS join(3499028..3499386,3499483..3501451,3501633..3501839, 3502533..3502853) /locus_tag="TCM_043027" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Intracellular protein transport protein USO1, putative isoform 1" /protein_id="EOY18440.1" /db_xref="Phytozome:POPTR_0010s22140.1" /db_xref="TAIR:AT3G55060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM17" /translation="MKKLFFFKSSSSNGNSNAVPSPSADKQVYWENPLDRELNDQLGD KADYSFRSPRRLFGKSGKQISDSPSFSNSSCLRRSRSLSSAAFLVDGLGQQHFSSSND QNRSPNITPHQQYDHSSRRRALTPEKKSKAKRCEVAAVGFERPCSSSFSRMHHDSSGS SSSCSSNVSSKVIDRYIDGEQQQESSKSKNSSQRNNLRNGGGRLPPRVQYTAPSSPTD SVKEKNVSHSFREAKGTRLHFSSKDWVENGLGHESPRKIAKNVVERLSQTHAVPRSSS KEFNHHIPITTEDVYGGYLNRCPDSKLDMLAQKSCVMDEPYANVIGYHEDFSSLEKQN CLSGGSDDGLDSFETEEDADVELQRRSKEAEERVILLSEALAQESFLRDSGFDVSSLI QTIRHLIQEKINLALEVSDLLQSRIAERAFAREELRMARAELESQTKKLEKEKHELQS GLEKELDRRSSDWSFKLEKYQLEEQRLRERVRELAEQNVSLQREVSSFNEKEIENRSI MTYSAEQLKDLTRRVEEISDENQDLRQNLSESQQKYRAAIEDLDCIRRNFEEKEKECK ELQKSTTRLLRTCSEQEKTIEGLREGYSEDIGKMQSMEKNEKQVKKLQMEQMRLTGVE LALRREVESYRLEVGFLRHENIDLLNRLKGNGKDIGALTFKLDKEMRSRVCCLQNQGL SMLNESTHLSSKLIEFIKGRASQLQETHQGLDGQFIVESDVKVQGFKRGIESLTRSLQ TIANLLHEKSSAVGSKCHSACMDPDGSMKLNNQSSEEIIRTELKAETLLTSLLREKLY SKELEVEQLQAELAAGVRGNDILRCEVQNAMDNISCLTHRLKDLELQILKKDDNISHL QNDLKESTKELTILRGILPKVSQERDLIWEEVKQYSEKNMLLNSEVNVLKKKIEALDE DILLKEGQITILKDTLNNNKTFDLLGSPDSTREFLLE" gene 3502841..3504889 /locus_tag="TCM_043028" /note="dbxref CacaoGD:Thecc1EG043028" mRNA join(3502841..3502864,3504466..3504889) /locus_tag="TCM_043028" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s12060.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc565t3_C2" mobile_element 3503774..3503924 /note="source:CACAO_on_SS_E42_scaffold_2 17467 17621" /mobile_element_type="transposon:TIR/Mutator" CDS 3504519..3504863 /locus_tag="TCM_043028" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18441.1" /translation="MAPPEGRRQPPQDIETGPPSNPQPPVSRPMLLFSFQGRVSRTAL LSRSTVLVVYSMNTQETGDQTYDVCAICLEKFHDGDQCRVLSGCKHVYHKFCIERWLA EAQNCPVCRLYI" gene complement(3506082..3509946) /locus_tag="TCM_043029" /note="dbxref CacaoGD:Thecc1EG043029" mRNA complement(join(3506082..3506473,3506880..3507005, 3507431..3507513,3507712..3507814,3508010..3508102, 3508182..3508294,3508572..3508630,3508764..3508892, 3509180..3509316,3509677..3509946)) /locus_tag="TCM_043029" /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032636001" /inference="similar to AA sequence:Phytozome:POPTR_0008s04680.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4151t2" mRNA complement(join(3506091..3506473,3506880..3507005, 3507431..3507513,3508010..3508102,3508182..3508294, 3508572..3508630,3508764..3508892,3509180..3509316, 3509677..3509932)) /locus_tag="TCM_043029" /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032636001" /inference="similar to AA sequence:ricco:29758.m000658" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7698t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4151t2" mRNA complement(join(3506879..3507005,3507431..3507513, 3507712..3507814,3508010..3508033,3508775..3508892, 3509180..3509316,3509677..3509935)) /locus_tag="TCM_043029" /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032636001" /inference="similar to AA sequence:Phytozome:POPTR_0008s04680.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17846t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4151t2" CDS complement(join(3506964..3507005,3507431..3507513, 3507712..3507814,3508010..3508033,3508775..3508892, 3509180..3509316,3509677..3509892)) /locus_tag="TCM_043029" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein isoform 5" /protein_id="EOY18446.1" /db_xref="Phytozome:POPTR_0008s04680.1" /db_xref="TAIR:AT4G08790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LE50" /translation="MLNRCVYFTPNGAPLYHPIRSSHVNSYVNYSTVQARAQSAMAAA NSVRVAAAQMTSVNDIASNFATCSRLVKEAVSAGAKMLCLPENFSYVGSKSGDSLLIA EPLDGPIMQKYCSLARESGIWLSLGGFQEKGHDDAHLRNTHVIIDDAGNIRSTYSRAI ETQCYVIASAQAGKHSEKRESYGETLIIDPWGTVVGRLPDRVSTGITVADIDFSLIDS VRAKMPIAKHRKPFDFWRPASL" CDS complement(join(3506964..3507005,3507431..3507513, 3507712..3507814,3508010..3508102,3508182..3508294, 3508572..3508630,3508764..3508892,3509180..3509316, 3509677..3509892)) /locus_tag="TCM_043029" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein isoform 1" /protein_id="EOY18442.1" /db_xref="Phytozome:POPTR_0008s04680.1" /db_xref="TAIR:AT4G08790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LE50" /translation="MLNRCVYFTPNGAPLYHPIRSSHVNSYVNYSTVQARAQSAMAAA NSVRVAAAQMTSVNDIASNFATCSRLVKEAVSAGAKMLCLPENFSYVGSKSGDSLLIA EPLDGPIMQKYCSLARESGIWLSLGGFQEKGHDDAHLRNTHVIIDDAGNIRSTYSKIH LFDVDVPGGAVYKESSFTEPGKDIAAVDSPIGRLGLTVCYDLRFPEIYQQLRFQHEAQ VILVPAAFTTVTGQAHWEILLRARAIETQCYVIASAQAGKHSEKRESYGETLIIDPWG TVVGRLPDRVSTGITVADIDFSLIDSVRAKMPIAKHRKPFDFWRPASL" CDS complement(join(3507487..3507513,3508010..3508102, 3508182..3508294,3508572..3508630,3508764..3508892, 3509180..3509316,3509677..3509892)) /locus_tag="TCM_043029" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29758.m000658" /codon_start=1 /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein isoform 2" /protein_id="EOY18443.1" /db_xref="TAIR:AT4G08790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LE50" /translation="MLNRCVYFTPNGAPLYHPIRSSHVNSYVNYSTVQARAQSAMAAA NSVRVAAAQMTSVNDIASNFATCSRLVKEAVSAGAKMLCLPENFSYVGSKSGDSLLIA EPLDGPIMQKYCSLARESGIWLSLGGFQEKGHDDAHLRNTHVIIDDAGNIRSTYSKIH LFDVDVPGGAVYKESSFTEPGKDIAAVDSPIGRLGLTVCYDLRFPEIYQQLRFQHEAQ VILVPAAFTTVTGQAHWEILLRARAIETQCYIEYQQGLL" mRNA complement(join(3507712..3508102,3508182..3508294, 3508572..3508630,3508764..3508892,3509180..3509316, 3509677..3509932)) /locus_tag="TCM_043029" /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032636001" /inference="similar to AA sequence:ricco:29758.m000658" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7698t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4151t2" mRNA complement(join(3507785..3507814,3508010..3508083, 3508182..3508294,3508572..3508630,3508764..3508892, 3509180..3509316,3509677..3509932)) /locus_tag="TCM_043029" /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032636001" /inference="similar to AA sequence:ricco:29758.m000658" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7698t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4151t2" CDS complement(join(3507808..3507814,3508010..3508083, 3508182..3508294,3508572..3508630,3508764..3508892, 3509180..3509316,3509677..3509892)) /locus_tag="TCM_043029" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29758.m000658" /codon_start=1 /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein isoform 4" /protein_id="EOY18445.1" /db_xref="TAIR:AT4G08790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LE50" /translation="MLNRCVYFTPNGAPLYHPIRSSHVNSYVNYSTVQARAQSAMAAA NSVRVAAAQMTSVNDIASNFATCSRLVKEAVSAGAKMLCLPENFSYVGSKSGDSLLIA EPLDGPIMQKYCSLARESGIWLSLGGFQEKGHDDAHLRNTHVIIDDAGNIRSTYSKIH LFDVDVPGGAVYKESSFTEPGKDIAAVDSPIGRLGLTVCYDLRFPEIYQQLRFQHEAQ LSPQLLVRHIGRFFFVPVQLRLSAMS" CDS complement(join(3507914..3508102,3508182..3508294, 3508572..3508630,3508764..3508892,3509180..3509316, 3509677..3509892)) /locus_tag="TCM_043029" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29758.m000658" /codon_start=1 /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein isoform 3" /protein_id="EOY18444.1" /db_xref="TAIR:AT4G08790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LE50" /translation="MLNRCVYFTPNGAPLYHPIRSSHVNSYVNYSTVQARAQSAMAAA NSVRVAAAQMTSVNDIASNFATCSRLVKEAVSAGAKMLCLPENFSYVGSKSGDSLLIA EPLDGPIMQKYCSLARESGIWLSLGGFQEKGHDDAHLRNTHVIIDDAGNIRSTYSKIH LFDVDVPGGAVYKESSFTEPGKDIAAVDSPIGRLGLTVCYDLRFPEIYQQLRFQHEAQ VILVPAAFTTVTGQAHWEILLRARAIETQCYVWNPFPPHFLLICPLKQFIVSSIGNIA FVPT" gene 3511816..3517142 /locus_tag="TCM_043030" /note="dbxref CacaoGD:Thecc1EG043030" mRNA join(3511816..3512384,3513228..3513646,3514401..3514783, 3515668..3515904,3516393..3517142) /locus_tag="TCM_043030" /product="Phosphatase 2C family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006581t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04670.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b041538t1a3; alternateUTRof:Thecc1EG043030t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4149t1" mRNA join(3511816..3512384,3513228..3513646,3514416..3514783, 3515668..3515904,3516393..3517142) /locus_tag="TCM_043030" /product="Phosphatase 2C family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006581t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04670.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b041538t1a2; alternateUTRof:Thecc1EG043030t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4149t1" mRNA join(3511816..3512384,3513155..3513646,3514401..3514783, 3515668..3515904,3516393..3516895) /locus_tag="TCM_043030" /product="Phosphatase 2C family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006581t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04670.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b041538t1a4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4149t1" mRNA join(3511816..3512384,3513155..3513646,3514416..3514783, 3515668..3515904,3516393..3516895) /locus_tag="TCM_043030" /product="Phosphatase 2C family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006581t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04670.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4149t1" CDS join(3513322..3513646,3514401..3514783,3515668..3515904, 3516393..3516602) /locus_tag="TCM_043030" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG006581t1" /codon_start=1 /product="Phosphatase 2C family protein isoform 2" /protein_id="EOY18448.1" /db_xref="Phytozome:POPTR_0008s04670.1" /db_xref="TAIR:AT3G12620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E607" /translation="MVSASLMRIVSPCWRPSVEGENSSRGGDANGRVDGLLWYKDSGQ HVTGEFSMAVIQANNLLEDHSQLESGPMSSVESGPHGTFVGIYDGHGGPEAAKFITEH LFGHIKTINGAEFTSENHGMSADVINKAFLATEEDFLTLVKKQWLSKPQIASVGACCL VGIICSGLLYIANAGDSRVVLGRLEKAFKEVKAVQLSSEHNASVESVREELRSLHPDD PQIVVLKHKVWRVKGIIQISRSIGDAYLKKAEFNKEPLLPKFRLPEPFQKPILQAEPA ILVQKLHPEDQFLIFASDGLWEHLSNQEAVNVVNTCPRNGIARRLVKAALREAAKKRE MRYSDLKKIDRGVRRHFHDDITVVVLFLDSHLISRSYWRGPMVSIRGGGG" CDS join(3513322..3513646,3514401..3514783,3515668..3515904, 3516393..3516602) /locus_tag="TCM_043030" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG006581t1" /codon_start=1 /product="Phosphatase 2C family protein isoform 2" /protein_id="EOY18449.1" /db_xref="Phytozome:POPTR_0008s04670.1" /db_xref="TAIR:AT3G12620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E607" /translation="MVSASLMRIVSPCWRPSVEGENSSRGGDANGRVDGLLWYKDSGQ HVTGEFSMAVIQANNLLEDHSQLESGPMSSVESGPHGTFVGIYDGHGGPEAAKFITEH LFGHIKTINGAEFTSENHGMSADVINKAFLATEEDFLTLVKKQWLSKPQIASVGACCL VGIICSGLLYIANAGDSRVVLGRLEKAFKEVKAVQLSSEHNASVESVREELRSLHPDD PQIVVLKHKVWRVKGIIQISRSIGDAYLKKAEFNKEPLLPKFRLPEPFQKPILQAEPA ILVQKLHPEDQFLIFASDGLWEHLSNQEAVNVVNTCPRNGIARRLVKAALREAAKKRE MRYSDLKKIDRGVRRHFHDDITVVVLFLDSHLISRSYWRGPMVSIRGGGG" CDS join(3513322..3513646,3514416..3514783,3515668..3515904, 3516393..3516602) /locus_tag="TCM_043030" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG006581t1" /codon_start=1 /product="Phosphatase 2C family protein isoform 1" /protein_id="EOY18447.1" /db_xref="Phytozome:POPTR_0008s04670.1" /db_xref="TAIR:AT3G12620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E607" /translation="MVSASLMRIVSPCWRPSVEGENSSRGGDANGRVDGLLWYKDSGQ HVTGEFSMAVIQANNLLEDHSQLESGPMSSVESGPHGTFVGIYDGHGGPEAAKFITEH LFGHIKKFTSENHGMSADVINKAFLATEEDFLTLVKKQWLSKPQIASVGACCLVGIIC SGLLYIANAGDSRVVLGRLEKAFKEVKAVQLSSEHNASVESVREELRSLHPDDPQIVV LKHKVWRVKGIIQISRSIGDAYLKKAEFNKEPLLPKFRLPEPFQKPILQAEPAILVQK LHPEDQFLIFASDGLWEHLSNQEAVNVVNTCPRNGIARRLVKAALREAAKKREMRYSD LKKIDRGVRRHFHDDITVVVLFLDSHLISRSYWRGPMVSIRGGGG" CDS join(3513322..3513646,3514416..3514783,3515668..3515904, 3516393..3516602) /locus_tag="TCM_043030" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG006581t1" /codon_start=1 /product="Phosphatase 2C family protein isoform 1" /protein_id="EOY18450.1" /db_xref="Phytozome:POPTR_0008s04670.1" /db_xref="TAIR:AT3G12620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E607" /translation="MVSASLMRIVSPCWRPSVEGENSSRGGDANGRVDGLLWYKDSGQ HVTGEFSMAVIQANNLLEDHSQLESGPMSSVESGPHGTFVGIYDGHGGPEAAKFITEH LFGHIKKFTSENHGMSADVINKAFLATEEDFLTLVKKQWLSKPQIASVGACCLVGIIC SGLLYIANAGDSRVVLGRLEKAFKEVKAVQLSSEHNASVESVREELRSLHPDDPQIVV LKHKVWRVKGIIQISRSIGDAYLKKAEFNKEPLLPKFRLPEPFQKPILQAEPAILVQK LHPEDQFLIFASDGLWEHLSNQEAVNVVNTCPRNGIARRLVKAALREAAKKREMRYSD LKKIDRGVRRHFHDDITVVVLFLDSHLISRSYWRGPMVSIRGGGG" gene 3517411..3521684 /locus_tag="TCM_043031" /note="dbxref CacaoGD:Thecc1EG043031" mRNA join(3517411..3517858,3518283..3518357,3518521..3518581, 3519277..3519363,3519725..3519823,3519902..3520001, 3520080..3520156,3520302..3520409,3521041..3521121, 3521199..3521315) /locus_tag="TCM_043031" /product="Glutathione S-transferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032639001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022060t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04660.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06390t00001" mRNA join(3517451..3517858,3518283..3518357,3518521..3518581, 3519277..3519363,3519725..3519859,3519932..3520001, 3520080..3520156,3520302..3520409,3521041..3521684) /locus_tag="TCM_043031" /product="Glutathione S-transferase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032639001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022060t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s04660.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8013t2; inference alignment:Newbler:10:TSA:cgbaP1_g06390t00001; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc274t16" mRNA join(3517649..3517858,3518283..3518357,3518521..3518581, 3519277..3519363,3519725..3519823,3519902..3520001, 3520080..3520156,3520356..3520409,3521041..3521121, 3521199..3521500) /locus_tag="TCM_043031" /product="Glutathione S-transferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032639001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022060t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04660.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00091t00002; inference alignment:Newbler:10:TSA:cgbaP1_g06390t00001; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc274t16" mRNA join(3517833..3517858,3518283..3518357,3518521..3518581, 3519902..3520001,3520080..3520156,3520302..3520409, 3521041..3521121,3521199..3521372) /locus_tag="TCM_043031" /product="Glutathione S-transferase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032639001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022060t1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc660t8_C2; inference alignment:Newbler:10:TSA:cgbaP1_g06390t00001; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc274t16" CDS join(3517848..3517858,3518283..3518357,3518521..3518581, 3519277..3519363,3519725..3519859,3519932..3520001, 3520080..3520156,3520302..3520409,3521041..3521256) /locus_tag="TCM_043031" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022060t2" /codon_start=1 /product="Glutathione S-transferase family protein isoform 3" /protein_id="EOY18453.1" /db_xref="Phytozome:POPTR_0008s04660.1" /db_xref="TAIR:AT3G55040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H8U5" /translation="MATGSVREVLPPALDSHSDPPPIFDGTTRLYISYTCPYAQRVWI TRNCKGLQDKIKLVPIDLKNRPAWYKQKVYPANKVPALEHNNEVKGESLELIKYIDSH FEGPSLFPDVKSQKFLISCFSLFSYIDSFYKTATSSFKGDGSKAGVAFDYIETALSKF EDGPFFLGQFSLVDIAYAPFIERIHPFLLEVKKYDFTLGRPKLATWIEEMNKNEAYTQ TKSDPKDLVQSYKERFMVLHLFKSLSSIGNFSTLILLTCFFCRLSFEHWGFSACPHHE KKN" CDS join(3517848..3517858,3518283..3518357,3518521..3518581, 3519277..3519363,3519725..3519823,3519902..3520001, 3520080..3520156,3520302..3520409,3521041..3521121, 3521199..3521210) /locus_tag="TCM_043031" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022060t1" /codon_start=1 /product="Glutathione S-transferase family protein isoform 1" /protein_id="EOY18451.1" /db_xref="Phytozome:POPTR_0008s04660.1" /db_xref="TAIR:AT3G55040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H8U5" /translation="MATGSVREVLPPALDSHSDPPPIFDGTTRLYISYTCPYAQRVWI TRNCKGLQDKIKLVPIDLKNRPAWYKQKVYPANKVPALEHNNEVKGESLELIKYIDSH FEGPSLFPDDPAKKEYAEELFSYIDSFYKTATSSFKGDGSKAGVAFDYIETALSKFED GPFFLGQFSLVDIAYAPFIERIHPFLLEVKKYDFTLGRPKLATWIEEMNKNEAYTQTK SDPKDLVQSYKERFMAQL" CDS join(3517848..3517858,3518283..3518357,3518521..3518581, 3519277..3519363,3519725..3519823,3519902..3520001, 3520080..3520156,3520356..3520409,3521041..3521121, 3521199..3521210) /locus_tag="TCM_043031" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022060t1" /codon_start=1 /product="Glutathione S-transferase family protein isoform 2" /protein_id="EOY18452.1" /db_xref="Phytozome:POPTR_0008s04660.1" /db_xref="TAIR:AT3G55040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H8U5" /translation="MATGSVREVLPPALDSHSDPPPIFDGTTRLYISYTCPYAQRVWI TRNCKGLQDKIKLVPIDLKNRPAWYKQKVYPANKVPALEHNNEVKGESLELIKYIDSH FEGPSLFPDDPAKKEYAEELFSYIDSFYKTATSSFKGDGSKAGVAFDYIETALSKFED GPFFLGQFSLVKKYDFTLGRPKLATWIEEMNKNEAYTQTKSDPKDLVQSYKERFMAQL " CDS join(3517848..3517858,3518283..3518357,3518521..3518581, 3519902..3520001,3520080..3520156,3520302..3520409, 3521041..3521121,3521199..3521210) /locus_tag="TCM_043031" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG022060t1" /codon_start=1 /product="Glutathione S-transferase family protein isoform 4" /protein_id="EOY18454.1" /db_xref="TAIR:AT5G02780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H8U5" /translation="MATGSVREVLPPALDSHSDPPPIFDGTTRLYISYTCPYAQRVWI TRNCKDPAKKEYAEELFSYIDSFYKTATSSFKGDGSKAGVAFDYIETALSKFEDGPFF LGQFSLVDIAYAPFIERIHPFLLEVKKYDFTLGRPKLATWIEEMNKNEAYTQTKSDPK DLVQSYKERFMAQL" mRNA join(<3518552..3518581,3518985..3519047,3519274..3519363, 3519725..3519823,3519902..3520001,3520080..3520156, 3520302..3520409,3521041..3521121,3521199..3521372) /locus_tag="TCM_043031" /product="Glutathione S-transferase family protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032639001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022060t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04660.1" /note="transcript variant 7; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc660t7_C2; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc274t16; inference alignment:Newbler:10:TSA:cgbaP1_g06390t00001" CDS join(<3518552..3518581,3518985..3519047,3519274..3519363, 3519725..3519823,3519902..3520001,3520080..3520156, 3520302..3520409,3521041..3521121,3521199..3521210) /locus_tag="TCM_043031" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG022060t1" /codon_start=1 /product="Glutathione S-transferase family protein isoform 7" /protein_id="EOY18457.1" /db_xref="Phytozome:POPTR_0008s04660.1" /db_xref="TAIR:AT3G55040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H8U5" /translation="QRVWITRNCKALNSFWPWSERDERAYPPSCNQGLQDKIKLVPID LKNRPAWYKQKVYPANKVPALEHNNEVKGESLELIKYIDSHFEGPSLFPDDPAKKEYA EELFSYIDSFYKTATSSFKGDGSKAGVAFDYIETALSKFEDGPFFLGQFSLVDIAYAP FIERIHPFLLEVKKYDFTLGRPKLATWIEEMNKNEAYTQTKSDPKDLVQSYKERFMAQ L" mRNA join(3518983..3519051,3519277..3519363,3519725..3519859, 3519932..3520001,3520080..3520156,3520302..3520409, 3521041..3521121,3521199..3521684) /locus_tag="TCM_043031" /product="Glutathione S-transferase family protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032639001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022060t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04660.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8013t4; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc274t16; inference alignment:Newbler:10:TSA:cgbaP1_g06390t00001" mRNA join(3518983..3519051,3519277..3519363,3519725..3519823, 3519902..3520001,3520080..3520156,3520302..3520409, 3521041..3521121,3521199..3521372) /locus_tag="TCM_043031" /product="Glutathione transferase lambda 2 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032639001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022060t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04660.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc660t10_C2; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc274t16; inference alignment:Newbler:10:TSA:cgbaP1_g06390t00001" CDS join(3519046..3519051,3519277..3519363,3519725..3519859, 3519932..3520001,3520080..3520156,3520302..3520409, 3521041..3521121,3521199..3521210) /locus_tag="TCM_043031" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG022060t1" /codon_start=1 /product="Glutathione S-transferase family protein isoform 6" /protein_id="EOY18456.1" /db_xref="Phytozome:POPTR_0008s04660.1" /db_xref="TAIR:AT3G55040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H8U5" /translation="MPGLQDKIKLVPIDLKNRPAWYKQKVYPANKVPALEHNNEVKGE SLELIKYIDSHFEGPSLFPDVKSQKFLISCFSLFSYIDSFYKTATSSFKGDGSKAGVA FDYIETALSKFEDGPFFLGQFSLVDIAYAPFIERIHPFLLEVKKYDFTLGRPKLATWI EEMNKNEAYTQTKSDPKDLVQSYKERFMAQL" CDS join(3519046..3519051,3519277..3519363,3519725..3519823, 3519902..3520001,3520080..3520156,3520302..3520409, 3521041..3521121,3521199..3521210) /locus_tag="TCM_043031" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG022060t1" /codon_start=1 /product="Glutathione transferase lambda 2 isoform 5" /protein_id="EOY18455.1" /db_xref="Phytozome:POPTR_0008s04660.1" /db_xref="TAIR:AT3G55040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H8U5" /translation="MPGLQDKIKLVPIDLKNRPAWYKQKVYPANKVPALEHNNEVKGE SLELIKYIDSHFEGPSLFPDDPAKKEYAEELFSYIDSFYKTATSSFKGDGSKAGVAFD YIETALSKFEDGPFFLGQFSLVDIAYAPFIERIHPFLLEVKKYDFTLGRPKLATWIEE MNKNEAYTQTKSDPKDLVQSYKERFMAQL" gene complement(3521350..3527266) /locus_tag="TCM_043032" /note="dbxref CacaoGD:Thecc1EG043032" mRNA complement(join(3521350..3521402,3521830..3521954, 3522243..3522688,3522807..3522892,3522977..3523033, 3523118..3523231,3523367..3523417,3523538..3523635, 3524368..3524834,3527070..3527266)) /locus_tag="TCM_043032" /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032640001" /inference="similar to AA sequence:ricco:29758.m000647" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc274t21_C1" mRNA complement(join(3521373..3521402,3521830..3522515, 3522982..3523033,3523118..3523231,3523367..3523417, 3523538..3523635,3524368..3524925)) /locus_tag="TCM_043032" /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032640001" /inference="similar to AA sequence:TAIR:AT3G55030.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc318t4_C1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc274t21_C1" mRNA complement(join(3521830..3522688,3522807..3522892, 3522977..3523033,3523118..3523231,3523367..3523417, 3523538..3523635,3524368..3524807)) /locus_tag="TCM_043032" /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032640001" /inference="similar to AA sequence:ricco:29758.m000647" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc274t21_C1; alternateUTRof:Thecc1EG043032t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc274t21_C1" CDS complement(join(3522406..3522515,3522982..3523033, 3523118..3523231,3523367..3523417,3523538..3523635, 3524368..3524800)) /locus_tag="TCM_043032" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase isoform 4" /protein_id="EOY18461.1" /db_xref="TAIR:AT3G55030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80952" /translation="MAGLKLSMAASICVKPSKWVRTITATNSRAPPSLHLTRRTIDPS SSSAQFSIPLPNKNLPFFRFASPTCFSSSAKNKGAFNGSGSASGGILADMDSDSKTSP LMQQQQDHQPKLSSSNNSSSKILTLPTILTLGRVAAVPLLIFTFYVDSWWGRTATTSI FIAAAITDWLDGYIARKMRLHSVFGAFLDPVADKLMVAATLVLLCSRPLNVAVFGQVP WLLIVPSIAIIGREITMSAVREWAASQNSKLFAADLSCYFWSLSDECLHILKLSSLLK WIKEKALAF" CDS complement(join(3522568..3522688,3522807..3522892, 3522977..3523033,3523118..3523231,3523367..3523417, 3523538..3523635,3524368..3524800)) /locus_tag="TCM_043032" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29758.m000647" /codon_start=1 /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase isoform 1" /protein_id="EOY18458.1" /db_xref="TAIR:AT2G39290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80952" /translation="MAGLKLSMAASICVKPSKWVRTITATNSRAPPSLHLTRRTIDPS SSSAQFSIPLPNKNLPFFRFASPTCFSSSAKNKGAFNGSGSASGGILADMDSDSKTSP LMQQQQDHQPKLSSSNNSSSKILTLPTILTLGRVAAVPLLIFTFYVDSWWGRTATTSI FIAAAITDWLDGYIARKMRLHSVFGAFLDPVADKLMVAATLVLLCSRPLNVAVFGQVP WLLIVPSIAIIGREITMSAVREWAASQNSKLLEAVAVNNLGKWKTATQMAALTILLAT RDSSLGEPGIFVASGVILLYISAGLSVMSLGVYMGKIWKVLIK" CDS complement(join(3522568..3522688,3522807..3522892, 3522977..3523033,3523118..3523231,3523367..3523417, 3523538..3523635,3524368..3524800)) /locus_tag="TCM_043032" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29758.m000647" /codon_start=1 /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase isoform 1" /protein_id="EOY18459.1" /db_xref="TAIR:AT2G39290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80952" /translation="MAGLKLSMAASICVKPSKWVRTITATNSRAPPSLHLTRRTIDPS SSSAQFSIPLPNKNLPFFRFASPTCFSSSAKNKGAFNGSGSASGGILADMDSDSKTSP LMQQQQDHQPKLSSSNNSSSKILTLPTILTLGRVAAVPLLIFTFYVDSWWGRTATTSI FIAAAITDWLDGYIARKMRLHSVFGAFLDPVADKLMVAATLVLLCSRPLNVAVFGQVP WLLIVPSIAIIGREITMSAVREWAASQNSKLLEAVAVNNLGKWKTATQMAALTILLAT RDSSLGEPGIFVASGVILLYISAGLSVMSLGVYMGKIWKVLIK" mRNA complement(join(3522663..3522688,3522807..3522892, 3522991..3523033,3523118..3523231,3523367..3523417, 3523538..3523635,3524368..3524925)) /locus_tag="TCM_043032" /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032640001" /inference="similar to AA sequence:TAIR:AT3G55030.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc318t2; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc274t21_C1" CDS complement(join(3522876..3522892,3522991..3523033, 3523118..3523231,3523367..3523417,3523538..3523635, 3524368..3524800)) /locus_tag="TCM_043032" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase isoform 3" /protein_id="EOY18460.1" /db_xref="TAIR:AT3G55030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80952" /translation="MAGLKLSMAASICVKPSKWVRTITATNSRAPPSLHLTRRTIDPS SSSAQFSIPLPNKNLPFFRFASPTCFSSSAKNKGAFNGSGSASGGILADMDSDSKTSP LMQQQQDHQPKLSSSNNSSSKILTLPTILTLGRVAAVPLLIFTFYVDSWWGRTATTSI FIAAAITDWLDGYIARKMRLHSVFGAFLDPVADKLMVAATLVLLCSRPLNVAVFGQVP WLLIVPSIAIIGREITMSAVREWAASQNSCCSK" gene complement(3525730..3527556) /locus_tag="TCM_043033" /note="dbxref CacaoGD:Thecc1EG043033" mRNA complement(join(3525730..3526308,3526690..3526994, 3527070..3527556)) /locus_tag="TCM_043033" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028156t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.47 coverage" CDS complement(join(3526018..3526308,3526690..3526773)) /locus_tag="TCM_043033" /note="paralog of Thecc1EG028156t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18462.1" /translation="MIEEKREVEMRYTKDIEFELLLGSIKVKGEGVWIMRLPMCVMWG EHMMALVVRDVGVHTMMMIYAMCAMWGEHMMTLVVRDVGVHRMMMIYAMCVMWGEHMM ALVVRDVGVHTMTPTMCGVEYT" mobile_element complement(3526823..3527955) /note="source:CACAO_M_E3248_F5_scaffold_1 1652 2741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3529974..3530107) /note="source:scaffold_7_CACTA_0789 1861 1990" /mobile_element_type="transposon:TIR/CACTA" gene 3530618..3542341 /locus_tag="TCM_043034" /note="dbxref CacaoGD:Thecc1EG043034" mRNA join(3530618..3531252,3533377..3533439,3533613..3533786, 3534736..3534805,3535250..3535870,3535941..3536120, 3536247..3536360,3536441..3536499,3536767..3536833, 3536970..3537021,3537129..3537221,3537403..3537486, 3537608..3538032,3538858..3538919,3539229..3539298, 3539761..3539841,3539940..3540041,3540587..3540711, 3541087..3541204,3541409..3542341) /locus_tag="TCM_043034" /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022061t1" /inference="similar to AA sequence:ricco:29758.m000646" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc580t2" CDS join(3531218..3531252,3533377..3533439,3533613..3533786, 3534736..3534805,3535250..3535870,3535941..3536120, 3536247..3536360,3536441..3536499,3536767..3536833, 3536970..3537021,3537129..3537221,3537403..3537486, 3537608..3538032,3538858..3538919,3539229..3539298, 3539761..3539841,3539940..3540041,3540587..3540711, 3541087..3541204,3541409..3541582) /locus_tag="TCM_043034" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29758.m000646; paralog of Thecc1EG022061t1" /codon_start=1 /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 1" /protein_id="EOY18463.1" /db_xref="TAIR:AT3G55020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTZ9" /translation="MLKVDEFSRPQRSCCRSCLFPVFDLRVKKSPTWNSRKQKNLRKI LSFRHRHPSQTNQIDPPYQEQMRSSATSITTTTKAANSPIITFEHKRDAYGFAVRPQH VQRYREYANIYKEEEEERSDRWNDFLERQAESAQLPVNGISSEEGKDASHAEAAEDGN NEVQKEAEGDDLCEKKPGSDSLSENDTEKDKVQSAPEKRVHRIQIWTEIRPSLRAIED MMSIRVKKKGSLKDEQETGRGKPLTPTDEARFPKGASEEDSEDEFYDAERSDPVLDAS TGESMSTTTGAAAAVDTAPTESLFPWKEELEVLVRGGVPMALRGELWQAFVGVKTRRV DKYYQDLLANENNSGQNTEQQSLQTDSKDQTTESIGGPEKWKGQIEKDLPRTFPGHPA LDDDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGIIDDYFD GYYSEEMIESQVDQLVFEELVHERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWE SVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQSLAGSTFDSSQ LVLTACMGYQNVNEKRLHELREKHRPAVIAAIEERSKGLQAWRDTQGLASKLYNFKHD PKSMLMETNKTGRLVDSQANGNLSRSESGSTNADEVFVSLTGDAELDAGTDLQEQLVW LKVELCRLLEEKRSAVLRSEELETALMEMVKQDNRRQLSARVEQLEQEVAELRKALSE KQEQENAMLQVLMRVEQEQRVTEDARRFAEQDAAAQRYAAQVLQEKYEDAIASLAEME KRVVMAESMLEATLQYQSGQSKAQPSPRSSNPDSPARTNQELQQEIPARKISLLSRPF GLGWRDRNKGKPSTGDGVNDGKPSNEGQNTEIQQKDTNAKETNGKDTNDKDTNDKETN SVEVQDKE" mRNA join(3533419..3533786,3534736..3534805,3535250..3535870, 3535941..3536120,3536247..3536360,3536441..3536499, 3536767..3536833,3536970..3537021,3537129..3537221, 3537403..3537486,3537608..3538032,3538858..3538919, 3539229..3539298,3539761..3539841,3539940..3540041, 3540587..3540711,3541080..3541204,3541409..3542327) /locus_tag="TCM_043034" /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022061t3" /inference="similar to AA sequence:ricco:29758.m000646" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc580t8; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc580t2; inference alignment:Newbler:10:TSA:cgbaP2_g15249t00001" mRNA join(3533419..3533786,3534736..3534805,3535250..3535870, 3535941..3536120,3536247..3536360,3536441..3536499, 3536767..3536833,3536970..3537021,3537129..3537221, 3537403..3537486,3537608..3538032,3538858..3538919, 3539229..3539298,3539761..3539841,3539940..3540041, 3540587..3540711,3541087..3541204,3541391..3542327) /locus_tag="TCM_043034" /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022061t1" /inference="similar to AA sequence:ricco:29758.m000646" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc580t5; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc580t2; inference alignment:Newbler:10:TSA:cgbaP2_g15249t00001" mRNA join(3533419..3533786,3534736..3534805,3535250..3535870, 3535941..3536120,3536247..3536360,3536441..3536499, 3536767..3536833,3536970..3537021,3537129..3537221, 3537403..3537486,3537608..3538032,3538858..3538919, 3539229..3539298,3539761..3539841,3539940..3540041, 3540587..3540711,3541087..3541204,3541409..3542327) /locus_tag="TCM_043034" /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022061t1" /inference="similar to AA sequence:ricco:29758.m000646" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc580t10; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc580t2; inference alignment:Newbler:10:TSA:cgbaP2_g15249t00001" mRNA join(3533419..3533786,3534736..3534805,3535250..3535870, 3535941..3536120,3536247..3536360,3536441..3536499, 3536767..3536833,3536970..3537021,3537129..3537221, 3537403..3537486,3537608..3538032,3538858..3538919, 3539229..3539298,3539761..3539841,3539940..3540041, 3540587..3540628,3541133..3541204,3541409..3542327) /locus_tag="TCM_043034" /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022061t1" /inference="similar to AA sequence:ricco:29758.m000646" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc580t3; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc580t2; inference alignment:Newbler:10:TSA:cgbaP2_g15249t00001" mRNA join(3533448..3533786,3534736..3534805,3535250..3535870, 3535941..3536120,3536247..3536360,3536438..3536499, 3536767..3536833,3536970..3537021,3537129..3537221, 3537403..3537486,3537608..3538032,3538858..3538919, 3539229..3539298,3539761..3539841,3539940..3540041, 3540587..3540711,3541087..3541204,3541409..3542327) /locus_tag="TCM_043034" /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022061t1" /inference="similar to AA sequence:ricco:29758.m000646" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2226t2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc580t2; inference alignment:Newbler:10:TSA:cgbaP2_g15249t00001" CDS join(3533710..3533786,3534736..3534805,3535250..3535870, 3535941..3536120,3536247..3536360,3536438..3536499, 3536767..3536833,3536970..3537021,3537129..3537221, 3537403..3537486,3537608..3538032,3538858..3538919, 3539229..3539298,3539761..3539841,3539940..3540041, 3540587..3540711,3541087..3541204,3541409..3541582) /locus_tag="TCM_043034" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29758.m000646; paralog of Thecc1EG022061t1" /codon_start=1 /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 5" /protein_id="EOY18467.1" /db_xref="TAIR:AT3G55020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTZ9" /translation="MRSSATSITTTTKAANSPIITFEHKRDAYGFAVRPQHVQRYREY ANIYKEEEEERSDRWNDFLERQAESAQLPVNGISSEEGKDASHAEAAEDGNNEVQKEA EGDDLCEKKPGSDSLSENDTEKDKVQSAPEKRVHRIQIWTEIRPSLRAIEDMMSIRVK KKGSLKDEQETGRGKPLTPTDEARFPKGASEEDSEDEFYDAERSDPVLDASTGESMST TTGAAAAVDTAPTESLFPWKEELEVLVRGGVPMALRGELWQAFVGVKTRRVDKYYQDL LANENNSGQNTEQQSLQTDSKDQTTESIGGPEKWKGQIEKDLPRTFPGHPALDDDGRN ALRRLLTAYARHNPSVGYCQQAMNFFAALLLLLMPEENAFWALMGIIDDYFDGYYSEE MIESQVDQLVFEELVHERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRVW DVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQSLAGSTFDSSQLVLTAC MGYQNVNEKRLHELREKHRPAVIAAIEERSKGLQAWRDTQGLASKLYNFKHDPKSMLM ETNKTGRLVDSQANGNLSRSESGSTNADEVFVSLTGDAELDAGTDLQEQLVWLKVELC RLLEEKRSAVLRSEELETALMEMVKQDNRRQLSARVEQLEQEVAELRKALSEKQEQEN AMLQVLMRVEQEQRVTEDARRFAEQDAAAQRYAAQVLQEKYEDAIASLAEMEKRVVMA ESMLEATLQYQSGQSKAQPSPRSSNPDSPARTNQELQQEIPARKISLLSRPFGLGWRD RNKGKPSTGDGVNDGKPSNEGQNTEIQQKDTNAKETNGKDTNDKDTNDKETNSVEVQD KE" CDS join(3533710..3533786,3534736..3534805,3535250..3535870, 3535941..3536120,3536247..3536360,3536441..3536499, 3536767..3536833,3536970..3537021,3537129..3537221, 3537403..3537486,3537608..3538032,3538858..3538919, 3539229..3539298,3539761..3539841,3539940..3540041, 3540587..3540711,3541087..3541204,3541391..3541582) /locus_tag="TCM_043034" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29758.m000646; paralog of Thecc1EG022061t1" /codon_start=1 /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 2" /protein_id="EOY18464.1" /db_xref="TAIR:AT3G55020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTZ9" /translation="MRSSATSITTTTKAANSPIITFEHKRDAYGFAVRPQHVQRYREY ANIYKEEEEERSDRWNDFLERQAESAQLPVNGISSEEGKDASHAEAAEDGNNEVQKEA EGDDLCEKKPGSDSLSENDTEKDKVQSAPEKRVHRIQIWTEIRPSLRAIEDMMSIRVK KKGSLKDEQETGRGKPLTPTDEARFPKGASEEDSEDEFYDAERSDPVLDASTGESMST TTGAAAAVDTAPTESLFPWKEELEVLVRGGVPMALRGELWQAFVGVKTRRVDKYYQDL LANENNSGQNTEQQSLQTDSKDQTTESIGGPEKWKGQIEKDLPRTFPGHPALDDDGRN ALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGIIDDYFDGYYSEEM IESQVDQLVFEELVHERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRVWD VLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQSLAGSTFDSSQLVLTACM GYQNVNEKRLHELREKHRPAVIAAIEERSKGLQAWRDTQGLASKLYNFKHDPKSMLME TNKTGRLVDSQANGNLSRSESGSTNADEVFVSLTGDAELDAGTDLQEQLVWLKVELCR LLEEKRSAVLRSEELETALMEMVKQDNRRQLSARVEQLEQEVAELRKALSEKQEQENA MLQVLMRVEQEQRVTEDARRFAEQDAAAQRYAAQVLQEKYEDAIASLAEMEKRVVMAE SMLEATLQYQSGQSKAQPSPRSSNPDSPARTNQELQQEIPARKISLLSRPFGLGWRDR NKIYRTKQGKPSTGDGVNDGKPSNEGQNTEIQQKDTNAKETNGKDTNDKDTNDKETNS VEVQDKE" CDS join(3533710..3533786,3534736..3534805,3535250..3535870, 3535941..3536120,3536247..3536360,3536441..3536499, 3536767..3536833,3536970..3537021,3537129..3537221, 3537403..3537486,3537608..3538032,3538858..3538919, 3539229..3539298,3539761..3539841,3539940..3540041, 3540587..3540711,3541087..3541204,3541409..3541582) /locus_tag="TCM_043034" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29758.m000646; paralog of Thecc1EG022061t1" /codon_start=1 /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 4" /protein_id="EOY18466.1" /db_xref="TAIR:AT3G55020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTZ9" /translation="MRSSATSITTTTKAANSPIITFEHKRDAYGFAVRPQHVQRYREY ANIYKEEEEERSDRWNDFLERQAESAQLPVNGISSEEGKDASHAEAAEDGNNEVQKEA EGDDLCEKKPGSDSLSENDTEKDKVQSAPEKRVHRIQIWTEIRPSLRAIEDMMSIRVK KKGSLKDEQETGRGKPLTPTDEARFPKGASEEDSEDEFYDAERSDPVLDASTGESMST TTGAAAAVDTAPTESLFPWKEELEVLVRGGVPMALRGELWQAFVGVKTRRVDKYYQDL LANENNSGQNTEQQSLQTDSKDQTTESIGGPEKWKGQIEKDLPRTFPGHPALDDDGRN ALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGIIDDYFDGYYSEEM IESQVDQLVFEELVHERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRVWD VLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQSLAGSTFDSSQLVLTACM GYQNVNEKRLHELREKHRPAVIAAIEERSKGLQAWRDTQGLASKLYNFKHDPKSMLME TNKTGRLVDSQANGNLSRSESGSTNADEVFVSLTGDAELDAGTDLQEQLVWLKVELCR LLEEKRSAVLRSEELETALMEMVKQDNRRQLSARVEQLEQEVAELRKALSEKQEQENA MLQVLMRVEQEQRVTEDARRFAEQDAAAQRYAAQVLQEKYEDAIASLAEMEKRVVMAE SMLEATLQYQSGQSKAQPSPRSSNPDSPARTNQELQQEIPARKISLLSRPFGLGWRDR NKGKPSTGDGVNDGKPSNEGQNTEIQQKDTNAKETNGKDTNDKDTNDKETNSVEVQDK E" CDS join(3533710..3533786,3534736..3534805,3535250..3535870, 3535941..3536120,3536247..3536360,3536441..3536499, 3536767..3536833,3536970..3537021,3537129..3537221, 3537403..3537486,3537608..3538032,3538858..3538919, 3539229..3539298,3539761..3539841,3539940..3540041, 3540587..3540628,3541133..3541204,3541409..3541582) /locus_tag="TCM_043034" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29758.m000646; paralog of Thecc1EG022061t1" /codon_start=1 /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 6" /protein_id="EOY18468.1" /db_xref="TAIR:AT3G55020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTZ9" /translation="MRSSATSITTTTKAANSPIITFEHKRDAYGFAVRPQHVQRYREY ANIYKEEEEERSDRWNDFLERQAESAQLPVNGISSEEGKDASHAEAAEDGNNEVQKEA EGDDLCEKKPGSDSLSENDTEKDKVQSAPEKRVHRIQIWTEIRPSLRAIEDMMSIRVK KKGSLKDEQETGRGKPLTPTDEARFPKGASEEDSEDEFYDAERSDPVLDASTGESMST TTGAAAAVDTAPTESLFPWKEELEVLVRGGVPMALRGELWQAFVGVKTRRVDKYYQDL LANENNSGQNTEQQSLQTDSKDQTTESIGGPEKWKGQIEKDLPRTFPGHPALDDDGRN ALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGIIDDYFDGYYSEEM IESQVDQLVFEELVHERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRVWD VLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQSLAGSTFDSSQLVLTACM GYQNVNEKRLHELREKHRPAVIAAIEERSKGLQAWRDTQGLASKLYNFKHDPKSMLME TNKTGRLVDSQANGNLSRSESGSTNADEVFVSLTGDAELDAGTDLQEQLVWLKVELCR LLEEKRSAVLRSEELETALMEMVKQDNRRQLSARVEQLEQEVAELRKALSEKQEQENA MLQVLMRVEQEQRVTEDARRFAEQDAAAQRYAAQVLQEKYEDAIASLAEMEQEIPARK ISLLSRPFGLGWRDRNKGKPSTGDGVNDGKPSNEGQNTEIQQKDTNAKETNGKDTNDK DTNDKETNSVEVQDKE" CDS join(3533710..3533786,3534736..3534805,3535250..3535870, 3535941..3536120,3536247..3536360,3536441..3536499, 3536767..3536833,3536970..3537021,3537129..3537221, 3537403..3537486,3537608..3538032,3538858..3538919, 3539229..3539298,3539761..3539841,3539940..3540041, 3540587..3540711,3541080..3541158) /locus_tag="TCM_043034" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29758.m000646; paralog of Thecc1EG022061t3" /codon_start=1 /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 3" /protein_id="EOY18465.1" /db_xref="TAIR:AT3G55020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTZ9" /translation="MRSSATSITTTTKAANSPIITFEHKRDAYGFAVRPQHVQRYREY ANIYKEEEEERSDRWNDFLERQAESAQLPVNGISSEEGKDASHAEAAEDGNNEVQKEA EGDDLCEKKPGSDSLSENDTEKDKVQSAPEKRVHRIQIWTEIRPSLRAIEDMMSIRVK KKGSLKDEQETGRGKPLTPTDEARFPKGASEEDSEDEFYDAERSDPVLDASTGESMST TTGAAAAVDTAPTESLFPWKEELEVLVRGGVPMALRGELWQAFVGVKTRRVDKYYQDL LANENNSGQNTEQQSLQTDSKDQTTESIGGPEKWKGQIEKDLPRTFPGHPALDDDGRN ALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGIIDDYFDGYYSEEM IESQVDQLVFEELVHERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRVWD VLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQSLAGSTFDSSQLVLTACM GYQNVNEKRLHELREKHRPAVIAAIEERSKGLQAWRDTQGLASKLYNFKHDPKSMLME TNKTGRLVDSQANGNLSRSESGSTNADEVFVSLTGDAELDAGTDLQEQLVWLKVELCR LLEEKRSAVLRSEELETALMEMVKQDNRRQLSARVEQLEQEVAELRKALSEKQEQENA MLQVLMRVEQEQRVTEDARRFAEQDAAAQRYAAQVLQEKYEDAIASLAEMEKRVVMAE SMLEATLQYQSGQSKAQPSPRLQIIESRFTSTHQSRAPTRNSCTKD" mobile_element 3542676..3542807 /note="source:scaffold_7_CACTA_0795 3327 3466" /mobile_element_type="transposon:TIR/CACTA" gene 3542811..3554585 /locus_tag="TCM_043035" /note="dbxref CacaoGD:Thecc1EG043035" mRNA join(3542811..3543344,3543557..3543716,3544192..3544485, 3544568..3544661,3544772..3544969,3545910..3546144, 3546795..3547122,3547212..3547488,3547946..3548201, 3548301..3548736,3548912..3549362) /locus_tag="TCM_043035" /product="Ferric reduction oxidase 7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11860.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11860.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10382t00001" mobile_element complement(3542811..3542913) /note="source:INTACT433_F212_scaffold_1-int 3042 3147" /mobile_element_type="retrotransposon:LTR/Copia" mRNA join(3543842..3544485,3544568..3544661,3544772..3544969, 3545910..3546144,3546795..3547122,3547212..3547488, 3547946..3548201,3548301..3548562,3548712..3548736, 3554303..3554585) /locus_tag="TCM_043035" /product="Ferric reduction oxidase 7 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11860.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11860.7" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc142t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc142t8; inference alignment:Newbler:10:TSA:cgbaL_g10382t00001" CDS join(3544254..3544485,3544568..3544661,3544772..3544969, 3545910..3546144,3546795..3547122,3547212..3547488, 3547946..3548201,3548301..3548562,3548712..3548736, 3554303..3554387) /locus_tag="TCM_043035" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ferric reduction oxidase 7 isoform 2" /protein_id="EOY18470.1" /db_xref="Phytozome:POPTR_0001s11860.7" /db_xref="TAIR:AT5G49740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3KTM0" /translation="MDANQLNKPLLLSDGVEPDYVKKSSFLVSSVKWTLKIVMWVIFI AWFGLIFLYPGEIGNQLAEKIINATRGSVFGITGSLFMVFSAPVLIIAFLAVAHLIIS GGDVFEKRKTSKSPRFRLWTFPVLVDGPFGVVSAAELIGIILFVVFIFWAVYAYTLRN LSLMTLFDIPSTEKGIVMLELTGLRFGMIGLLCLAFLFLPVARGSLLLRLIDIPFEHA TRYHVWLGHLTMTLFTLHGLFYVIAWAIKGTLLKELLEWRNIGIANLPGVISLLAGLF MWVTSLHPVRKDYFELFFYTHQLYVVFVVFLALHVGDFVFSIAAGGIFIFMLDRFLRF CQSRRTVDVLSAKCLPCGTVELVLSKPRNLGYNALSFIFLQVRELSWLQWHPFSVSSS PLDGKYHLSILIKVLGGWTARLRDNILSMSETEPQKDLPFLTKTTITASVEGPYGHES PYHLMYENLILVAGGIGISPFLAILSDILHRVRDGKPCLPRKILLVWAVKKSDELPLL STIDMELICPFFADKVKIEINIYVTRESEPSLEEGNVHVALKSSACPLSGCNMSILVG TGNNIWSGLYVIISTVGFVISVALLRIFYINPYQVSTWWYQGFLFIACMVASVIIFGG LVIIWFQTRLPRSRWDLIIRVSVAAAVIIVWELLLCIFA" CDS join(3544254..3544485,3544568..3544661,3544772..3544969, 3545910..3546144,3546795..3547122,3547212..3547488, 3547946..3548201,3548301..3548736,3548912..3549081) /locus_tag="TCM_043035" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ferric reduction oxidase 7 isoform 1" /protein_id="EOY18469.1" /db_xref="Phytozome:POPTR_0001s11860.1" /db_xref="TAIR:AT5G49740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3KTM0" /translation="MDANQLNKPLLLSDGVEPDYVKKSSFLVSSVKWTLKIVMWVIFI AWFGLIFLYPGEIGNQLAEKIINATRGSVFGITGSLFMVFSAPVLIIAFLAVAHLIIS GGDVFEKRKTSKSPRFRLWTFPVLVDGPFGVVSAAELIGIILFVVFIFWAVYAYTLRN LSLMTLFDIPSTEKGIVMLELTGLRFGMIGLLCLAFLFLPVARGSLLLRLIDIPFEHA TRYHVWLGHLTMTLFTLHGLFYVIAWAIKGTLLKELLEWRNIGIANLPGVISLLAGLF MWVTSLHPVRKDYFELFFYTHQLYVVFVVFLALHVGDFVFSIAAGGIFIFMLDRFLRF CQSRRTVDVLSAKCLPCGTVELVLSKPRNLGYNALSFIFLQVRELSWLQWHPFSVSSS PLDGKYHLSILIKVLGGWTARLRDNILSMSETEPQKDLPFLTKTTITASVEGPYGHES PYHLMYENLILVAGGIGISPFLAILSDILHRVRDGKPCLPRKILLVWAVKKSDELPLL STIDMELICPFFADKVKIEINIYVTRESEPSLEEGNVHVALKSSACPLSGCNMSILVG TGNNIWSGLYVIISTVGFVISVALLRIFYINPYQVSTWWYQGFLFIACMVASVIIFGG LVISLWHLWDKKVSARDEHEDNDRTKVKSAQSNETVATKDLRQKNLENFTTIQYGSRP DFQEIFGCTSRKWGHVDVGVIVCGPPTLQSSVAKEIRSHNISRQRHQAIYHFNSHSFD L" gene complement(3549956..3554492) /locus_tag="TCM_043036" /note="dbxref CacaoGD:Thecc1EG043036" mRNA complement(join(3549956..3550607,3551117..3551508, 3551752..3551941,3553121..3553314,3554300..3554492)) /locus_tag="TCM_043036" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400050519" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022063t1" /inference="similar to AA sequence:ricco:29758.m000645" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06593t00001" CDS complement(join(3550347..3550607,3551117..3551508, 3551752..3551941,3553121..3553314,3554300..3554414)) /locus_tag="TCM_043036" /note="dbxref ricco:29758.m000645; paralog of Thecc1EG022063t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY18471.1" /db_xref="TAIR:AT5G18610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PDV6" /translation="MGWFPCGGKSSKNAKKKLPNNNNSSSNRNSDDQIPSTSEKLKVN SVPDGKEEATKDGNSDHIAAHTFTFRELAAATKNFRADCLLGEGGFGRVYKGRLESTN QVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGS LEDHLHDLPPDKRQLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDLKCSNILLGEGY HPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEI ITGRKAIDNSRAGGEQNLVAWARPLFKDRRKFAQMADPLLQGQYPVRGLYQALAVAAM CVQEQPNMRPLIADVVTALTYLASQKFDPETQSVQGSRTGSSTPRMRRE" mobile_element 3557945..3558106 /note="source:scaffold_8_CACTA_0850 11568 11721" /mobile_element_type="transposon:TIR/CACTA" gene 3559042..3561776 /locus_tag="TCM_043037" /note="dbxref CacaoGD:Thecc1EG043037" mRNA join(3559042..3559355,3559971..3560043,3560260..3560465, 3560570..3560612,3561296..3561339,3561459..3561776) /locus_tag="TCM_043037" /product="Elongator protein 6 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04620.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04620.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9122t2; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9122t1" mRNA join(3559113..3559355,3559971..3560043,3560260..3560465, 3560570..3560716,3561203..3561339,3561459..3561773) /locus_tag="TCM_043037" /product="Elongator protein 6, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04620.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04620.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9122t1" CDS join(3559122..3559355,3559971..3560043,3560260..3560465, 3560570..3560612,3561296..3561339,3561459..3561467) /locus_tag="TCM_043037" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Elongator protein 6 isoform 2" /protein_id="EOY18473.1" /db_xref="Phytozome:POPTR_0008s04620.1" /db_xref="TAIR:AT4G10090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM10" /translation="MNQRSSNLLDEALGLDQSIEPWPLRGRIVAIEDQVETSGSFVLH HILKRSLSPNSSNVSILIAFSQPFSHYDRVLRKLGCNLVTQRDNNRFFFFDMLMLQCP GGDEGISPECGLIALYGKIYKTIVALPEVSSKNVTIIIDDLSLMEVAANGSSDYVLDF MHYCRTLTTEFDCSLIALNHEDIYSRMFLPWKPRLTGMKPRQ" CDS join(3559122..3559355,3559971..3560043,3560260..3560465, 3560570..3560716,3561203..3561325) /locus_tag="TCM_043037" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Elongator protein 6, putative isoform 1" /protein_id="EOY18472.1" /db_xref="Phytozome:POPTR_0008s04620.1" /db_xref="TAIR:AT4G10090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM10" /translation="MNQRSSNLLDEALGLDQSIEPWPLRGRIVAIEDQVETSGSFVLH HILKRSLSPNSSNVSILIAFSQPFSHYDRVLRKLGCNLVTQRDNNRFFFFDMLMLQCP GGDEGISPECGLIALYGKIYKTIVALPEVSSKNVTIIIDDLSLMEVAANGSSDYVLDF MHYCRTLTTEFDCSLIALNHEDIYSSADRPTFLLQMEYLADILIKAEPLATGLASDVH GQLTVLNKGMNYRQGSSRNKISNFHFKVKENVVECFYPGSQG" gene complement(3562147..3577596) /locus_tag="TCM_043038" /note="dbxref CacaoGD:Thecc1EG043038" mRNA complement(join(3562147..3562972,3563054..3563122, 3563473..3564289,3564829..3565279,3565376..3565559, 3569180..3569338,3569631..3569764,3569879..3570040, 3575357..3575854,3576866..3576912,3577297..3577596)) /locus_tag="TCM_043038" /product="Pseudo response regulator, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29758.m000642" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022066t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s22230.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t4" mRNA complement(join(3562360..3563121,3564038..3564289, 3564829..3565279,3565376..3565559,3569180..3569338, 3569631..3569764,3569879..3570040,3575357..3575824)) /locus_tag="TCM_043038" /product="Pseudo response regulator isoform 11" /inference="alignment:exonerate- protein:2:ricco:29758.m000641" /inference="alignment:exonerate- protein:2:ricco:29758.m000642" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022066t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s22230.2" /note="transcript variant 11; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7807t13_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t4; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9357t16" mRNA complement(join(3562586..3563124,3563473..3563783, 3563967..3564289,3564829..3565279,3565376..3565559, 3569180..3569338,3569631..3569764,3569879..3570040, 3575357..3575854,3577297..3577434)) /locus_tag="TCM_043038" /product="Pseudo response regulator, putative isoform 5" /inference="alignment:exonerate- protein:2:ricco:29758.m000641" /inference="alignment:exonerate- protein:2:ricco:29758.m000642" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022066t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s22230.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t4; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9357t16" mRNA complement(join(3562586..3563122,3563473..3563786, 3563967..3564289,3564829..3565279,3565376..3565559, 3569180..3569338,3569631..3569764,3569879..3570040, 3575357..3575854,3577297..3577434)) /locus_tag="TCM_043038" /product="Pseudo response regulator, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29758.m000641" /inference="alignment:exonerate- protein:2:ricco:29758.m000642" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022066t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s22230.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t4; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9357t16" mRNA complement(join(3562586..3563122,3563471..3563786, 3563967..3564289,3564829..3565279,3565376..3565559, 3569180..3569338,3569631..3569764,3569879..3570040, 3575357..3575854,3576866..3576912,3577297..3577432)) /locus_tag="TCM_043038" /product="Pseudo response regulator, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29758.m000641" /inference="alignment:exonerate- protein:2:ricco:29758.m000642" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022066t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s22230.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t4; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9357t16" mRNA complement(join(3562586..3563122,3563473..3564289, 3564829..3565279,3565376..3565559,3569180..3569338, 3569631..3569764,3569879..3570040,3575357..3575854, 3576866..3576912,3577297..3577382)) /locus_tag="TCM_043038" /product="Pseudo response regulator isoform 3" /inference="alignment:exonerate- protein:2:ricco:29758.m000641" /inference="alignment:exonerate- protein:2:ricco:29758.m000642" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022066t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s22230.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t4; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9357t16" mRNA complement(join(3562670..3563122,3563473..3564289, 3564829..3565279,3565376..3565559,3569180..3569338, 3569631..3569764,3569879..3570040,3575357..3575854, 3577297..3577470)) /locus_tag="TCM_043038" /product="Pseudo response regulator isoform 3" /inference="alignment:exonerate- protein:2:ricco:29758.m000641" /inference="alignment:exonerate- protein:2:ricco:29758.m000642" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022066t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s22230.2" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00522t00001; alternateUTRof:Thecc1EG043038t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t4; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9357t16" mRNA complement(join(3562671..3563783,3563967..3564289, 3564829..3565279,3565376..3565559,3569180..3569338, 3569631..3569764,3569879..3570040,3575357..>3575676)) /locus_tag="TCM_043038" /product="Pseudo response regulator, putative isoform 8" /inference="alignment:exonerate- protein:2:ricco:29758.m000641" /inference="alignment:exonerate- protein:2:ricco:29758.m000642" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022066t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s22230.2" /note="transcript variant 8; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00455t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t4; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9357t16" mRNA complement(join(3562671..3563786,3563967..3564289, 3564829..3565279,3565376..3565559,3569180..3569338, 3569631..3569764,3569879..3570040,3575357..>3575676)) /locus_tag="TCM_043038" /product="Pseudo response regulator, putative isoform 7" /inference="alignment:exonerate- protein:2:ricco:29758.m000641" /inference="alignment:exonerate- protein:2:ricco:29758.m000642" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022066t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s22230.2" /note="transcript variant 7; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00455t00003; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t4; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9357t16" mRNA complement(join(3562671..3564289,3564829..3565279, 3565376..3565559,3569180..3569338,3569631..3569764, 3569879..3570040,3575357..>3575676)) /locus_tag="TCM_043038" /product="Pseudo response regulator, putative isoform 9" /inference="alignment:exonerate- protein:2:ricco:29758.m000641" /inference="alignment:exonerate- protein:2:ricco:29758.m000642" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022066t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s22230.2" /note="transcript variant 9; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.58 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00455t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t4; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9357t16" CDS complement(join(3562870..3563124,3563473..3563783, 3563967..3564289,3564829..3565279,3565376..3565559, 3569180..3569338,3569631..3569764,3569879..3570040, 3575357..3575723)) /locus_tag="TCM_043038" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG022066t3" /codon_start=1 /product="Pseudo response regulator, putative isoform 5" /protein_id="EOY18478.1" /db_xref="Phytozome:POPTR_0010s22230.2" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM08" /translation="MGIVQMNNNGPVANGLVELNTHIHDEHKKIRGGVIGEGQGLSVE EESWINEDVEDRNDGKTELVQVQGHAHGEQERSQQQPQGPLVHWERFLPLRSLKVLLV ENDDSTRHVVCALLRNCGFEVTAVSNGLQAWKILEDLTNHIDLVLTEVVMPCLSGIGL LCKIMSHKTRMNIPVIMMSSHDSMSTVFRCLSKGAVDFLVKPIRKNELKNLWQHVWRK CHSSSSSGGQSGTQTQKSSKSKGTDSDNNTGSNDEDDNGSVGLNVQDGSDNGSGTQSS WTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNE LENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQL ELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEM PFLELSLKRLRDVGDTGTSAHERNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLD NSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKT SAKSFHPSSAFQPVQSGHGSALQPVAQAAPQCGSSNLSSLPHVEGNAANHSLTRSASG SNHGSNGQNGSSTVLNTRGMNLESENGVPGKGGAGGGIGSGGRNVVDQNRFAQREAAL NKFRQKRKERCFEKKRFDIRAERNWLSRDHAFEDSLCDRSMKIKTGTQTANIQCLSLS VCKILHIRLALLGRKHSDFVVQDCALRDTKLRTLDQRPYSL" CDS complement(join(3562870..3563122,3563471..3563786, 3563967..3564289,3564829..3565279,3565376..3565559, 3569180..3569338,3569631..3569764,3569879..3570040, 3575357..3575723)) /locus_tag="TCM_043038" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022066t3" /codon_start=1 /product="Pseudo response regulator, putative isoform 2" /protein_id="EOY18475.1" /db_xref="Phytozome:POPTR_0010s22230.2" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM08" /translation="MGIVQMNNNGPVANGLVELNTHIHDEHKKIRGGVIGEGQGLSVE EESWINEDVEDRNDGKTELVQVQGHAHGEQERSQQQPQGPLVHWERFLPLRSLKVLLV ENDDSTRHVVCALLRNCGFEVTAVSNGLQAWKILEDLTNHIDLVLTEVVMPCLSGIGL LCKIMSHKTRMNIPVIMMSSHDSMSTVFRCLSKGAVDFLVKPIRKNELKNLWQHVWRK CHSSSSSGGQSGTQTQKSSKSKGTDSDNNTGSNDEDDNGSVGLNVQDGSDNGSGTQSS WTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNE LENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQL ELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEM PFLELSLKRLRDVGDTGTSAHERNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLD NSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKT SAKSFHPSSAFQPVQSGHGSALQPVAQAAAPQCGSSNLSSLPHVEGNAANHSLTRSAS GSNHGSNGQNGSSTVLNTRGMNLESENGVPGKGGAGGGIGSGGRNVVDQNRFAQREAA LNKFRQKRKERCFEKKVFDIRAERNWLSRDHAFEDSLCDRSMKIKTGTQTANIQCLSL SVCKILHIRLALLGRKHSDFVVQDCALRDTKLRTLDQRPYSL" CDS complement(join(3562916..3562972,3563054..3563122, 3563473..3564289,3564829..3565279,3565376..3565559, 3569180..3569338,3569631..3569764,3569879..3570040, 3575357..3575723)) /locus_tag="TCM_043038" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022066t3" /codon_start=1 /product="Pseudo response regulator, putative isoform 1" /protein_id="EOY18474.1" /db_xref="Phytozome:POPTR_0010s22230.2" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM08" /translation="MGIVQMNNNGPVANGLVELNTHIHDEHKKIRGGVIGEGQGLSVE EESWINEDVEDRNDGKTELVQVQGHAHGEQERSQQQPQGPLVHWERFLPLRSLKVLLV ENDDSTRHVVCALLRNCGFEVTAVSNGLQAWKILEDLTNHIDLVLTEVVMPCLSGIGL LCKIMSHKTRMNIPVIMMSSHDSMSTVFRCLSKGAVDFLVKPIRKNELKNLWQHVWRK CHSSSSSGGQSGTQTQKSSKSKGTDSDNNTGSNDEDDNGSVGLNVQDGSDNGSGTQSS WTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNE LENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQL ELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEM PFLELSLKRLRDVGDTGTSAHERNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLD NSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKT SAKSFHPSSAFQPVQSGHGSALQPVAQGKADAALGNMILVKARGTDQQGKVQHHHHHY HHHHHHHVHNMLPNQKLGNHDDLSLENMAAAAPQCGSSNLSSLPHVEGNAANHSLTRS ASGSNHGSNGQNGSSTVLNTRGMNLESENGVPGKGGAGGGIGSGGRNVVDQNRFAQRE AALNKFRQKRKERCFEKKVRYQSRKKLAEQRPRIRGQFVRQISTTGKEAFRFRGAGLC T" CDS complement(join(3563018..3563122,3563473..3563786, 3563967..3564289,3564829..3565279,3565376..3565559, 3569180..3569338,3569631..3569764,3569879..3570040, 3575357..3575723)) /locus_tag="TCM_043038" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG022066t3" /codon_start=1 /product="Pseudo response regulator, putative isoform 4" /protein_id="EOY18477.1" /db_xref="Phytozome:POPTR_0010s22230.2" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM08" /translation="MGIVQMNNNGPVANGLVELNTHIHDEHKKIRGGVIGEGQGLSVE EESWINEDVEDRNDGKTELVQVQGHAHGEQERSQQQPQGPLVHWERFLPLRSLKVLLV ENDDSTRHVVCALLRNCGFEVTAVSNGLQAWKILEDLTNHIDLVLTEVVMPCLSGIGL LCKIMSHKTRMNIPVIMMSSHDSMSTVFRCLSKGAVDFLVKPIRKNELKNLWQHVWRK CHSSSSSGGQSGTQTQKSSKSKGTDSDNNTGSNDEDDNGSVGLNVQDGSDNGSGTQSS WTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNE LENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQL ELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEM PFLELSLKRLRDVGDTGTSAHERNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLD NSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKT SAKSFHPSSAFQPVQSGHGSALQPVAQAAAPQCGSSNLSSLPHVEGNAANHSLTRSAS GSNHGSNGQNGSSTVLNTRGMNLESENGVPGKGGAGGGIGSGGRNVVDQNRFAQREAA LNKFRQKRKERCFEKKVRYQSRKKLAEQRPRIRGQFVRQVHENKNRDTNC" CDS complement(join(3563018..3563122,3563473..3564289, 3564829..3565279,3565376..3565559,3569180..3569338, 3569631..3569764,3569879..3570040,3575357..3575723)) /locus_tag="TCM_043038" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022066t3" /codon_start=1 /product="Pseudo response regulator isoform 3" /protein_id="EOY18476.1" /db_xref="Phytozome:POPTR_0010s22230.2" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM08" /translation="MGIVQMNNNGPVANGLVELNTHIHDEHKKIRGGVIGEGQGLSVE EESWINEDVEDRNDGKTELVQVQGHAHGEQERSQQQPQGPLVHWERFLPLRSLKVLLV ENDDSTRHVVCALLRNCGFEVTAVSNGLQAWKILEDLTNHIDLVLTEVVMPCLSGIGL LCKIMSHKTRMNIPVIMMSSHDSMSTVFRCLSKGAVDFLVKPIRKNELKNLWQHVWRK CHSSSSSGGQSGTQTQKSSKSKGTDSDNNTGSNDEDDNGSVGLNVQDGSDNGSGTQSS WTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNE LENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQL ELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEM PFLELSLKRLRDVGDTGTSAHERNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLD NSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKT SAKSFHPSSAFQPVQSGHGSALQPVAQGKADAALGNMILVKARGTDQQGKVQHHHHHY HHHHHHHVHNMLPNQKLGNHDDLSLENMAAAAPQCGSSNLSSLPHVEGNAANHSLTRS ASGSNHGSNGQNGSSTVLNTRGMNLESENGVPGKGGAGGGIGSGGRNVVDQNRFAQRE AALNKFRQKRKERCFEKKVRYQSRKKLAEQRPRIRGQFVRQVHENKNRDTNC" CDS complement(join(3563018..3563122,3563473..3564289, 3564829..3565279,3565376..3565559,3569180..3569338, 3569631..3569764,3569879..3570040,3575357..3575723)) /locus_tag="TCM_043038" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG022066t3" /codon_start=1 /product="Pseudo response regulator isoform 3" /protein_id="EOY18479.1" /db_xref="Phytozome:POPTR_0010s22230.2" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM08" /translation="MGIVQMNNNGPVANGLVELNTHIHDEHKKIRGGVIGEGQGLSVE EESWINEDVEDRNDGKTELVQVQGHAHGEQERSQQQPQGPLVHWERFLPLRSLKVLLV ENDDSTRHVVCALLRNCGFEVTAVSNGLQAWKILEDLTNHIDLVLTEVVMPCLSGIGL LCKIMSHKTRMNIPVIMMSSHDSMSTVFRCLSKGAVDFLVKPIRKNELKNLWQHVWRK CHSSSSSGGQSGTQTQKSSKSKGTDSDNNTGSNDEDDNGSVGLNVQDGSDNGSGTQSS WTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNE LENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQL ELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEM PFLELSLKRLRDVGDTGTSAHERNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLD NSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKT SAKSFHPSSAFQPVQSGHGSALQPVAQGKADAALGNMILVKARGTDQQGKVQHHHHHY HHHHHHHVHNMLPNQKLGNHDDLSLENMAAAAPQCGSSNLSSLPHVEGNAANHSLTRS ASGSNHGSNGQNGSSTVLNTRGMNLESENGVPGKGGAGGGIGSGGRNVVDQNRFAQRE AALNKFRQKRKERCFEKKVRYQSRKKLAEQRPRIRGQFVRQVHENKNRDTNC" CDS complement(join(3563091..3563121,3564038..3564289, 3564829..3565279,3565376..3565559,3569180..3569338, 3569631..3569764,3569879..3570040,3575357..3575723)) /locus_tag="TCM_043038" /note="encoded by transcript variant 11; alternatively spliced; paralog of Thecc1EG022066t3" /codon_start=1 /product="Pseudo response regulator isoform 11" /protein_id="EOY18484.1" /db_xref="Phytozome:POPTR_0010s22230.2" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM08" /translation="MGIVQMNNNGPVANGLVELNTHIHDEHKKIRGGVIGEGQGLSVE EESWINEDVEDRNDGKTELVQVQGHAHGEQERSQQQPQGPLVHWERFLPLRSLKVLLV ENDDSTRHVVCALLRNCGFEVTAVSNGLQAWKILEDLTNHIDLVLTEVVMPCLSGIGL LCKIMSHKTRMNIPVIMMSSHDSMSTVFRCLSKGAVDFLVKPIRKNELKNLWQHVWRK CHSSSSSGGQSGTQTQKSSKSKGTDSDNNTGSNDEDDNGSVGLNVQDGSDNGSGTQSS WTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNE LENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQL ELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEM PFLELSLKRLRDVGDTGTSAHERNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLD NSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKT SAKSSISEQKETG" CDS complement(join(3563389..3563783,3563967..3564289, 3564829..3565279,3565376..3565559,3569180..3569338, 3569631..3569764,3569879..3570040,3575357..>3575675)) /locus_tag="TCM_043038" /note="encoded by transcript variant 8; alternatively spliced; paralog of Thecc1EG022066t3" /codon_start=1 /product="Pseudo response regulator, putative isoform 8" /protein_id="EOY18481.1" /db_xref="Phytozome:POPTR_0010s22230.2" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM08" /translation="VELNTHIHDEHKKIRGGVIGEGQGLSVEEESWINEDVEDRNDGK TELVQVQGHAHGEQERSQQQPQGPLVHWERFLPLRSLKVLLVENDDSTRHVVCALLRN CGFEVTAVSNGLQAWKILEDLTNHIDLVLTEVVMPCLSGIGLLCKIMSHKTRMNIPVI MMSSHDSMSTVFRCLSKGAVDFLVKPIRKNELKNLWQHVWRKCHSSSSSGGQSGTQTQ KSSKSKGTDSDNNTGSNDEDDNGSVGLNVQDGSDNGSGTQSSWTKRAVEVDSSQPISP WDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNELENVVMGKDLEIGVPK ITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQLELNSEKSGGDLRNQAA DLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEMPFLELSLKRLRDVGDT GTSAHERNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLDNSSEAVKTDSMKNFQS TSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKTSAKSFHPSSAFQPVQS GHGSALQPVAQAAPQCGSSNLSSLPHVEGNAANHSLTRSASGSNHGSNGQNGSSTVLN TRGMNLESENGVPGKGGAGGGIGSGGRNVVDQNRFAQREAALNKFRQKRKERCFEKKV TVFDCDTGKYLFVKVGRCILLSTYII" CDS complement(join(3563389..3563786,3563967..3564289, 3564829..3565279,3565376..3565559,3569180..3569338, 3569631..3569764,3569879..3570040,3575357..>3575675)) /locus_tag="TCM_043038" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG022066t3" /codon_start=1 /product="Pseudo response regulator, putative isoform 7" /protein_id="EOY18480.1" /db_xref="Phytozome:POPTR_0010s22230.2" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM08" /translation="VELNTHIHDEHKKIRGGVIGEGQGLSVEEESWINEDVEDRNDGK TELVQVQGHAHGEQERSQQQPQGPLVHWERFLPLRSLKVLLVENDDSTRHVVCALLRN CGFEVTAVSNGLQAWKILEDLTNHIDLVLTEVVMPCLSGIGLLCKIMSHKTRMNIPVI MMSSHDSMSTVFRCLSKGAVDFLVKPIRKNELKNLWQHVWRKCHSSSSSGGQSGTQTQ KSSKSKGTDSDNNTGSNDEDDNGSVGLNVQDGSDNGSGTQSSWTKRAVEVDSSQPISP WDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNELENVVMGKDLEIGVPK ITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQLELNSEKSGGDLRNQAA DLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEMPFLELSLKRLRDVGDT GTSAHERNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLDNSSEAVKTDSMKNFQS TSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKTSAKSFHPSSAFQPVQS GHGSALQPVAQAAAPQCGSSNLSSLPHVEGNAANHSLTRSASGSNHGSNGQNGSSTVL NTRGMNLESENGVPGKGGAGGGIGSGGRNVVDQNRFAQREAALNKFRQKRKERCFEKK VTVFDCDTGKYLFVKVGRCILLSTYII" CDS complement(join(3563389..3564289,3564829..3565279, 3565376..3565559,3569180..3569338,3569631..3569764, 3569879..3570040,3575357..>3575675)) /locus_tag="TCM_043038" /note="encoded by transcript variant 9; alternatively spliced; paralog of Thecc1EG022066t3" /codon_start=1 /product="Pseudo response regulator, putative isoform 9" /protein_id="EOY18482.1" /db_xref="Phytozome:POPTR_0010s22230.2" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM08" /translation="VELNTHIHDEHKKIRGGVIGEGQGLSVEEESWINEDVEDRNDGK TELVQVQGHAHGEQERSQQQPQGPLVHWERFLPLRSLKVLLVENDDSTRHVVCALLRN CGFEVTAVSNGLQAWKILEDLTNHIDLVLTEVVMPCLSGIGLLCKIMSHKTRMNIPVI MMSSHDSMSTVFRCLSKGAVDFLVKPIRKNELKNLWQHVWRKCHSSSSSGGQSGTQTQ KSSKSKGTDSDNNTGSNDEDDNGSVGLNVQDGSDNGSGTQSSWTKRAVEVDSSQPISP WDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNELENVVMGKDLEIGVPK ITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQLELNSEKSGGDLRNQAA DLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEMPFLELSLKRLRDVGDT GTSAHERNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLDNSSEAVKTDSMKNFQS TSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKTSAKSFHPSSAFQPVQS GHGSALQPVAQGKADAALGNMILVKARGTDQQGKVQHHHHHYHHHHHHHVHNMLPNQK LGNHDDLSLENMAAAAPQCGSSNLSSLPHVEGNAANHSLTRSASGSNHGSNGQNGSST VLNTRGMNLESENGVPGKGGAGGGIGSGGRNVVDQNRFAQREAALNKFRQKRKERCFE KKVTVFDCDTGKYLFVKVGRCILLSTYII" mRNA complement(join(<3563582..3564289,3564829..3565279, 3565376..3565559,3569180..3569338,3569631..3570040, 3575357..3575854,3577297..3577595)) /locus_tag="TCM_043038" /product="Pseudo response regulator, putative isoform 10" /inference="alignment:exonerate- protein:2:ricco:29758.m000642" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022066t5" /inference="similar to AA sequence:Phytozome:POPTR_0010s22230.2" /note="transcript variant 10; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9357t15; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9357t16; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2140t4" CDS complement(join(<3563584..3564289,3564829..3565279, 3565376..3565559,3569180..3569338,3569631..3569762)) /locus_tag="TCM_043038" /note="encoded by transcript variant 10; alternatively spliced; paralog of Thecc1EG022066t5" /codon_start=1 /product="Pseudo response regulator, putative isoform 10" /protein_id="EOY18483.1" /db_xref="Phytozome:POPTR_0010s22230.2" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM08" /translation="MSSHDSMSTVFRCLSKGAVDFLVKPIRKNELKNLWQHVWRKCHS SSSSGGQSGTQTQKSSKSKGTDSDNNTGSNDEDDNGSVGLNVQDGSDNGSGTQSSWTK RAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNELEN VVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQLELN SEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEMPFL ELSLKRLRDVGDTGTSAHERNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLDNSS EAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKTSAK SFHPSSAFQPVQSGHGSALQPVAQGKADAALGNMILVKARGTDQQGKVQHHHHHYHHH HHHHVHNMLPNQKLGNHDDLSLENMAAAAPQCGSSNLSSLPHVEGNAANHSLTRSASG SNHGSNGQNGSSTVLNTRGMNLESENGVPGKGGAGG" mobile_element 3579254..3579316 /note="source:CACAO_M_E12463_F12_scaffold_3 4641 4705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3580446..3580549 /note="source:CACAO_on_E33_A_scaffold_3 2917 3029" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3580447..3580571) /note="source:CACAO_MITE97_scaffold_5 269 419" /mobile_element_type="transposon:TIR/MITE" gene 3583213..3584290 /locus_tag="TCM_043039" /note="dbxref CacaoGD:Thecc1EG043039" mRNA 3583213..3584290 /locus_tag="TCM_043039" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.55 coverage" CDS 3583800..3584033 /locus_tag="TCM_043039" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18485.1" /translation="MTNETSPPPRPPYQRRRCRHLQWQGKSWPLLTLPPEWVDSDNEK TVNFRFYSHMGKQILDLLKRCLAGGDRRRRQRQ" gene complement(3585041..3588347) /locus_tag="TCM_043040" /note="dbxref CacaoGD:Thecc1EG043040" mRNA complement(join(3585041..3585499,3585700..3585972, 3587135..3587275,3587945..3588347)) /locus_tag="TCM_043040" /product="Adenosine kinase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022068t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032645001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03401t00001" CDS complement(join(3585356..3585499,3585700..3585972, 3587135..3587275,3587945..3588289)) /locus_tag="TCM_043040" /note="paralog of Thecc1EG022068t1" /codon_start=1 /product="Adenosine kinase" /protein_id="EOY18486.1" /db_xref="Phytozome:GSVIVT01032645001" /db_xref="TAIR:AT2G37250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8HSW1" /translation="MAVLSRCSRAATAATTRTQTATATFSCILRALSPSFCSSSALNS ETDLSNKKPAVLGTLKREPTGRNVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLV RDELASSGPLSSQLKEIVNQGKLVSDEIIIELLSKCLEAGEAKGESGFILDGFPRTIR QAEILEGVTDIELVVNLKLREEALLAKCLGRRICSECGGNYNVACIDIKAENGRPGMY MAPLPPPPQCATKLITRADDTEEVVKERLRIYHEMTQPVEEFYRSRGKLLEFDLPGGI PESWPKLLRALNLEYHEDKQSAAA" mobile_element 3586879..3586988 /note="source:scaffold_3_CACTA_0396 873 986" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3589636..3589780 /note="source:scaffold_7_CACTA_0795 2849 3004" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3589649..3589738) /note="source:scaffold_9_CACTA_0942 5265 5361" /mobile_element_type="transposon:TIR/CACTA" gene complement(3589933..3595308) /locus_tag="TCM_043041" /note="dbxref CacaoGD:Thecc1EG043041" mRNA complement(join(3589933..3590524,3591087..3591243, 3591330..3591355,3591465..3591592,3592609..3592731, 3592865..3592953,3593536..3593668,3594950..3595308)) /locus_tag="TCM_043041" /product="Tonneau 1b isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032647001" /inference="similar to AA sequence:ricco:29923.m000839" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2235t3" mRNA complement(join(3590109..3590524,3591087..3591243, 3591330..3591592,3592609..3592731,3592865..3592953, 3593536..3593668,3594950..>3595183)) /locus_tag="TCM_043041" /product="Tonneau 1b isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032647001" /inference="similar to AA sequence:ricco:29923.m000839" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b041551t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2235t3" CDS complement(join(3590473..3590524,3591087..3591243, 3591330..3591355,3591465..3591592,3592609..3592731, 3592865..3592953,3593536..3593668,3594950..3595036)) /locus_tag="TCM_043041" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29923.m000839" /codon_start=1 /product="Tonneau 1b isoform 1" /protein_id="EOY18487.1" /db_xref="TAIR:AT3G55005.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FQ24" /translation="MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEED RVIEKEEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTLKVYLPECN MQKDFWKAELKDFSGKNAYDLNRNGDSGPLLLDVLEGFLKFENLSQAKGTGRRPQEIE SSSSLESRNTRRPSSSTVAGGLPPLGRPVPVSQSSDRRAGSSMSGYRKDEYSWRYDND DIPEDVIRASSALENLQLDRKARNLTTSWRHAGDGISEDDGRPDHM" mRNA complement(join(3591086..3591239,3591330..3591355, 3591465..3591592,3592609..3592731,3592865..3592953, 3593536..3593668,3594950..>3595184)) /locus_tag="TCM_043041" /product="Tonneau 1b isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032647001" /inference="similar to AA sequence:ricco:29923.m000839" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7824t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2235t3" CDS complement(join(3591157..3591239,3591330..3591355, 3591465..3591592,3592609..3592731,3592865..3592953, 3593536..3593668,3594950..>3595183)) /locus_tag="TCM_043041" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29923.m000839" /codon_start=1 /product="Tonneau 1b isoform 2" /protein_id="EOY18488.1" /db_xref="TAIR:AT3G55005.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FQ24" /translation="KKTIFIIICCTHFQHQRQAASFFVSSNTKRRRKRKLVFFLKSFL GNKQAMDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKEEGL PPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTLKVYLPECNMQKDFWKAE LKDFSGKNAYDLNRNGDSGPLLLDVLEGFLKFENLSQAKGTGRRPQEIESSSSLESRN TRRPSSSTVAGGLPPLGRPVPVSQSSGEQDPPCLATGKMSTVGDMTMMISQKM" CDS complement(join(3591440..3591592,3592609..3592731, 3592865..3592953,3593536..3593668,3594950..>3595183)) /locus_tag="TCM_043041" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29923.m000839" /codon_start=1 /product="Tonneau 1b isoform 3" /protein_id="EOY18489.1" /db_xref="TAIR:AT3G55005.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FQ24" /translation="KKTIFIIICCTHFQHQRQAASFFVSSNTKRRRKRKLVFFLKSFL GNKQAMDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKEEGL PPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTLKVYLPECNMQKDFWKAE LKDFSGKNAYDLNRNGDSGPLLLDVLEGFLKFENLSQAKGTGRRPQEIESSSSLESRN TRRPSSSTVAGGLPPLGRCWTIVTS" gene 3595878..3600272 /locus_tag="TCM_043042" /note="dbxref CacaoGD:Thecc1EG043042" mRNA join(3595878..3597385,3597941..3598174,3598274..3598600, 3598894..3599194,3599992..3600272) /locus_tag="TCM_043042" /product="Peptidase M1 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04570.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04570.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2268t1" mRNA join(3596107..3597385,3597941..3598174,3598274..3598761) /locus_tag="TCM_043042" /product="Peptidase M1 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04570.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04570.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7581t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2268t1" CDS join(3596384..3597385,3597941..3598174,3598274..3598600, 3598894..3599190) /locus_tag="TCM_043042" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Peptidase M1 family protein isoform 1" /protein_id="EOY18490.1" /db_xref="Phytozome:POPTR_0008s04570.1" /db_xref="TAIR:AT5G13520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FY49" /translation="MAPLDPHSFTDSTHTLTTHIALSLYFDFPSATIHGAALFTLSSP HSGPLCLDTRSLSIHRVLSPSTLSPLPYSLSPFCDPIKGTHLSLSLPNDAALSSFLIT FSTSPSSSALQWLSPPQTFNKKHPFVYTQCQSIHARSVFPCQDTPAARIRYSALLNVP RELSAVMSARHVDRRLPVSGEGYSNLLPNGFNSLWCSETRVVEEFDMNQPIPPYLFAF AVGELGFREVGPRTRVYSEAADGVLEAAAKEFAGTEDMIRQGEKLFGDYEWERFDLLV LPPSFPYGGMENPRMVFLTPTVIKGDASGAQVVAHELAHSWTGNLITNKNNEHFWLNE GFTTYAERRIVEAVQGEDRAVLSIGIGWRGLNDEIKRFQDNLEFTKLKTNQEGVDPDT FYSQVPYEKGFQFLWCIERQIGRPAFDEFLKKYIATFKFKSIDTETFLDFLKANAPGI EKEIDLVLWTEGTGIPPDAYEPVSNLYTKIVSLANEFKLGRMPREDEVADWQGQEWEL YLENLPKVVEASQVFALDARYRLSESNDYEVKVAFLQLAILSKCRDFYGEVEKTLKEV GRMKYLRPLYTALVQGIGKEEEKILAKRVFAEARDCYHPIAQGVVESIFAKHL" CDS join(3596384..3597385,3597941..3598174,3598274..3598621) /locus_tag="TCM_043042" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Peptidase M1 family protein isoform 2" /protein_id="EOY18491.1" /db_xref="Phytozome:POPTR_0008s04570.1" /db_xref="TAIR:AT5G13520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FY49" /translation="MAPLDPHSFTDSTHTLTTHIALSLYFDFPSATIHGAALFTLSSP HSGPLCLDTRSLSIHRVLSPSTLSPLPYSLSPFCDPIKGTHLSLSLPNDAALSSFLIT FSTSPSSSALQWLSPPQTFNKKHPFVYTQCQSIHARSVFPCQDTPAARIRYSALLNVP RELSAVMSARHVDRRLPVSGEGYSNLLPNGFNSLWCSETRVVEEFDMNQPIPPYLFAF AVGELGFREVGPRTRVYSEAADGVLEAAAKEFAGTEDMIRQGEKLFGDYEWERFDLLV LPPSFPYGGMENPRMVFLTPTVIKGDASGAQVVAHELAHSWTGNLITNKNNEHFWLNE GFTTYAERRIVEAVQGEDRAVLSIGIGWRGLNDEIKRFQDNLEFTKLKTNQEGVDPDT FYSQVPYEKGFQFLWCIERQIGRPAFDEFLKKYIATFKFKSIDTETFLDFLKANAPGI EKEIDLVLWTEGTGIPPDAYEPVSNLYTKIVSLANEFKLGRMPREDEVADWQGQEWEL YLENLPKVVEASQVVLFLS" mobile_element complement(3598709..3598769) /note="source:CACAO_M_S_E144962_F231_scaffold_10 1463 1530" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3600891..3602336) /locus_tag="TCM_043043" /note="dbxref CacaoGD:Thecc1EG043043" mRNA complement(3600891..3602336) /locus_tag="TCM_043043" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.94 coverage" CDS complement(3601882..3602205) /locus_tag="TCM_043043" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18492.1" /translation="MSKVFQSVNGGDFFQIKNRACTEHYIVLISLVPTFTRMLCEFKL LNFFPKIVSEIKIRLEETFLHPTHLSTDAKETKIPSPVTALANLDWIRNVETTLYIEL FTNTH" gene complement(3602019..3603916) /locus_tag="TCM_043044" /note="dbxref CacaoGD:Thecc1EG043044" mRNA complement(join(3602019..3602045,3602197..3602756, 3603159..3603916)) /locus_tag="TCM_043044" /product="Ribosomal protein L10 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22290.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04560.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4172t1" CDS complement(3603206..3603892) /locus_tag="TCM_043044" /codon_start=1 /product="Ribosomal protein L10 family protein" /protein_id="EOY18493.1" /db_xref="Phytozome:POPTR_0008s04560.1" /db_xref="TAIR:AT5G13510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU05" /translation="METALLSFPSSKPPPSQTQTLKPTNPFLHSSKPKFPSFKPTTPF PSIKAAISRTKKEETVETVKSQLENCYLIAAVKYTGFTVKQFQELRRSLPGSSKLLVA KNTLVFKAIEGTPWEALKPCMKGMNAWLFVHSEEIPDAIKPYRTFQKEKKVENDFTGA VFEGKFYGPGEFKQLENMPTRAEIYAKLLGSLQSPAIGLVGTLQAPARDVVMILQAYV KKLEEESGGQ" gene complement(3604204..3609366) /locus_tag="TCM_043045" /note="dbxref CacaoGD:Thecc1EG043045" mRNA complement(join(3604204..3604685,3604779..3604825, 3604991..3605195,3605662..3605729,3606144..3606239, 3606810..3607002,3607107..3607178,3607770..3607810, 3607908..3607981,3608495..3608598,3608724..3609366)) /locus_tag="TCM_043045" /product="Hydrolase family protein / HAD-superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016358001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041989t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016358001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:PASA:2:TSA:puevd3b041555t1a3; inference alignment:Newbler:10:TSA:cgbaB_g00570t00001" mRNA complement(join(3604204..3604685,3604779..3604862, 3604991..3605195,3605662..3605729,3606144..3606239, 3606810..3607002,3607107..3607178,3607770..3607810, 3607908..3607981,3608495..3608598,3608724..3609366)) /locus_tag="TCM_043045" /product="Hydrolase family protein / HAD-superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016358001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041989t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016358001" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00570t00001" mRNA complement(join(3604204..3604685,3604779..3604825, 3604991..3605195,3605662..3605729,3606144..3606239, 3606810..3607002,3607107..3607178,3607770..3607810, 3607908..3607981,3608277..3608312,3608495..3608598, 3608724..3609366)) /locus_tag="TCM_043045" /product="Hydrolase family protein / HAD-superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016358001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041989t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016358001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:PASA:2:TSA:puevd3b041555t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00570t00001" mRNA complement(join(3604440..3604685,3604779..3604862, 3604991..3605195,3605662..3605729,3606144..3606239, 3606810..3607002,3607107..3607178,3607770..3607810, 3607908..3607981,3608277..3608312,3608495..3608598, 3608724..3608934)) /locus_tag="TCM_043045" /product="Hydrolase family protein / HAD-superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016358001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041989t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016358001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2144t1; inference alignment:Newbler:10:TSA:cgbaB_g00570t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00259t00003" CDS complement(join(3604626..3604685,3604779..3604862, 3604991..3605195,3605662..3605729,3606144..3606239, 3606810..3607002,3607107..3607178,3607770..3607810, 3607908..3607981,3608495..3608598,3608724..3608824)) /locus_tag="TCM_043045" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041989t1" /codon_start=1 /product="Hydrolase family protein / HAD-superfamily protein isoform 1" /protein_id="EOY18494.1" /db_xref="Phytozome:GSVIVT01016358001" /db_xref="TAIR:AT3G45740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU06" /translation="MRFHATTISRVSQLKNRAPVLFQSSQLRSNHQKRCNFGIAFDID GVILRGRVPTGGSPQALRRLYGDSGGGVPETKRAKELSELLGVNILPSQVVQGHSPFR NLLKKFENELIIATGKGNPALVMSEYGFKKVLSLEEYASYFESIDPVSQYKRWTTAPV SDRKTPAVPRYDVFSERIKAAFVVSDPVDWGRDIQVLCDILRSGGLPGDANRNQPPLY FAADDLEYQAAFPSERLGLGAFRIALESIFNIINPKGLEYVSYGKPNPFVFKNAEAIL SQLQSSSCIDHSENNGVSGSHPFETLYMIGDNPSVDVKGARQSGHPWFSILTRTGVFR GKDNHAEFPANLVVDTVEEAVDYILRREYNS" CDS complement(join(3604626..3604685,3604779..3604862, 3604991..3605195,3605662..3605729,3606144..3606239, 3606810..3607002,3607107..3607178,3607770..3607810, 3607908..3607981,3608277..3608312,3608495..3608598, 3608724..3608824)) /locus_tag="TCM_043045" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041989t1" /codon_start=1 /product="Hydrolase family protein / HAD-superfamily protein isoform 2" /protein_id="EOY18495.1" /db_xref="Phytozome:GSVIVT01016358001" /db_xref="TAIR:AT3G45740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU06" /translation="MRFHATTISRVSQLKNRAPVLFQSSQLRSNHQKRCNFGIAFDID GVILRGRVPTGGSPQALRRLYGDSGELKVPYLFLTNGGGVPETKRAKELSELLGVNIL PSQVVQGHSPFRNLLKKFENELIIATGKGNPALVMSEYGFKKVLSLEEYASYFESIDP VSQYKRWTTAPVSDRKTPAVPRYDVFSERIKAAFVVSDPVDWGRDIQVLCDILRSGGL PGDANRNQPPLYFAADDLEYQAAFPSERLGLGAFRIALESIFNIINPKGLEYVSYGKP NPFVFKNAEAILSQLQSSSCIDHSENNGVSGSHPFETLYMIGDNPSVDVKGARQSGHP WFSILTRTGVFRGKDNHAEFPANLVVDTVEEAVDYILRREYNS" CDS complement(join(3604658..3604685,3604779..3604825, 3604991..3605195,3605662..3605729,3606144..3606239, 3606810..3607002,3607107..3607178,3607770..3607810, 3607908..3607981,3608495..3608598,3608724..3608824)) /locus_tag="TCM_043045" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG041989t1" /codon_start=1 /product="Hydrolase family protein / HAD-superfamily protein isoform 4" /protein_id="EOY18497.1" /db_xref="Phytozome:GSVIVT01016358001" /db_xref="TAIR:AT3G45740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU06" /translation="MRFHATTISRVSQLKNRAPVLFQSSQLRSNHQKRCNFGIAFDID GVILRGRVPTGGSPQALRRLYGDSGGGVPETKRAKELSELLGVNILPSQVVQGHSPFR NLLKKFENELIIATGKGNPALVMSEYGFKKVLSLEEYASYFESIDPVSQYKRWTTAPV SDRKTPAVPRYDVFSERIKAAFVVSDPVDWGRDIQVLCDILRSGGLPGDANRNQPPLY FAADDLEYQAAFPSERLGLGAFRIALESIFNIINPKGLEYVSYGKPNPFVFKNAEAIL SQLQSSSCIDHSENNGVSGSHPFETLYMIGDNPSVDVKGARQVFSEEKIIMQNFQQTW LLTLLRRQ" CDS complement(join(3604658..3604685,3604779..3604825, 3604991..3605195,3605662..3605729,3606144..3606239, 3606810..3607002,3607107..3607178,3607770..3607810, 3607908..3607981,3608277..3608312,3608495..3608598, 3608724..3608824)) /locus_tag="TCM_043045" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041989t1" /codon_start=1 /product="Hydrolase family protein / HAD-superfamily protein isoform 3" /protein_id="EOY18496.1" /db_xref="Phytozome:GSVIVT01016358001" /db_xref="TAIR:AT3G45740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU06" /translation="MRFHATTISRVSQLKNRAPVLFQSSQLRSNHQKRCNFGIAFDID GVILRGRVPTGGSPQALRRLYGDSGELKVPYLFLTNGGGVPETKRAKELSELLGVNIL PSQVVQGHSPFRNLLKKFENELIIATGKGNPALVMSEYGFKKVLSLEEYASYFESIDP VSQYKRWTTAPVSDRKTPAVPRYDVFSERIKAAFVVSDPVDWGRDIQVLCDILRSGGL PGDANRNQPPLYFAADDLEYQAAFPSERLGLGAFRIALESIFNIINPKGLEYVSYGKP NPFVFKNAEAILSQLQSSSCIDHSENNGVSGSHPFETLYMIGDNPSVDVKGARQVFSE EKIIMQNFQQTWLLTLLRRQ" gene 3609459..3618596 /locus_tag="TCM_043046" /note="dbxref CacaoGD:Thecc1EG043046" mRNA join(3609459..3609960,3610490..3610574,3610678..3610818, 3610945..3611033,3611547..3611735,3611933..3612063, 3612142..3612241,3613245..3613527,3618395..3618596) /locus_tag="TCM_043046" /product="Zinc finger CCCH domain-containing protein 11 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29805.m001499" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022072t1" /inference="similar to AA sequence:ricco:29805.m001499" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06133t00001" mRNA join(3609619..3609960,3610490..3610574,3610678..3610818, 3610945..3611033,3611547..3611735,3611933..3612486) /locus_tag="TCM_043046" /product="Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29805.m001499" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022072t2" /inference="similar to AA sequence:ricco:29805.m001499" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc531t5; inference alignment:Newbler:10:TSA:cgbaL_g06133t00001" CDS join(3609784..3609960,3610490..3610574,3610678..3610818, 3610945..3611033,3611547..3611735,3611933..3612063, 3612142..3612241,3613245..3613427) /locus_tag="TCM_043046" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29805.m001499; paralog of Thecc1EG022072t1" /codon_start=1 /product="Zinc finger CCCH domain-containing protein 11 isoform 1" /protein_id="EOY18498.1" /db_xref="TAIR:AT2G20280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JHZ2" /translation="MPPKQQAKSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQSLQ QTVQAKPDPSKVAAKKKKEEEKAREKELNDLFKIAVTQPKVPVGVDPKSIVCEFFKVG QCMKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKKTEYNQNK PTEIVCKYFLEAVEKKQYGWFWECPNGGKDCHYRHALPPGYVLKSQMKTLLEEESEKI SIEEEIENQRSKLTASTPMTPELFMLWKTKKMEEREASLAAQRAERAKNDRMSGRELF LSDASLFVDDAEAYEEYQREEPEVAEQKVKDDSTAAGPSNATSAVADSDDILLDDEDD ELDMDELNELEASLSRTSIHIREPGIPASY" CDS join(3609784..3609960,3610490..3610574,3610678..3610818, 3610945..3611033,3611547..3611735,3611933..3612313) /locus_tag="TCM_043046" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29805.m001499; paralog of Thecc1EG022072t2" /codon_start=1 /product="Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 3" /protein_id="EOY18500.1" /db_xref="TAIR:AT2G20280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNL2" /translation="MPPKQQAKSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQSLQ QTVQAKPDPSKVAAKKKKEEEKAREKELNDLFKIAVTQPKVPVGVDPKSIVCEFFKVG QCMKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKKTEYNQNK PTEIVCKYFLEAVEKKQYGWFWECPNGGKDCHYRHALPPGYVLKSQMKTLLEEESEKI SIEEEIENQRSKLTASTPMTPELFMLWKTKKMEEREASLAAQRAERAKNDRMRYYLPA GCSVLKILHWNVIIYLFIYFSGRELFLSDASLFVDDAEAYEEYQREEPEVAEQKVILL LLIFSIIDNSLAVGNLFFW" mRNA join(3609790..3609960,3610678..3610818,3610945..3611033, 3611547..3611735,3611933..3612063,3612142..3612241, 3613245..3613747) /locus_tag="TCM_043046" /product="Zinc finger CCCH domain-containing protein 11 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29805.m001499" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022072t1" /inference="similar to AA sequence:ricco:29805.m001499" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7860t2_C2; inference alignment:Newbler:10:TSA:cgbaL_g06133t00001" mobile_element 3610189..3610245 /note="source:CACAO_hAT_E2821_scaffold_6 1452 1507" /mobile_element_type="transposon:TIR/hAT" CDS join(3610728..3610818,3610945..3611033,3611547..3611735, 3611933..3612063,3612142..3612241,3613245..3613427) /locus_tag="TCM_043046" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29805.m001499; paralog of Thecc1EG022072t1" /codon_start=1 /product="Zinc finger CCCH domain-containing protein 11 isoform 2" /protein_id="EOY18499.1" /db_xref="TAIR:AT2G20280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JHZ2" /translation="MKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKV VESKKTEYNQNKPTEIVCKYFLEAVEKKQYGWFWECPNGGKDCHYRHALPPGYVLKSQ MKTLLEEESEKISIEEEIENQRSKLTASTPMTPELFMLWKTKKMEEREASLAAQRAER AKNDRMSGRELFLSDASLFVDDAEAYEEYQREEPEVAEQKVKDDSTAAGPSNATSAVA DSDDILLDDEDDELDMDELNELEASLSRTSIHIREPGIPASY" gene complement(3616579..3618303) /locus_tag="TCM_043047" /note="dbxref CacaoGD:Thecc1EG043047" mRNA complement(join(3616579..3617640,3618158..3618303)) /locus_tag="TCM_043047" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.30 coverage" mobile_element 3617113..3617159 /note="source:INTACT559_F78_scaffold_2-int 3905 3953" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(3617510..3617640,3618158..3618281)) /locus_tag="TCM_043047" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18501.1" /translation="MDLQVFTWNDHLNMSNMVKKGSLGDKDKTPNILNRIFWLKLVLL KCLEKNSKNSVSRLNEMILAIGKRLNNLLLHIELDYGNGI" gene 3618486..3619665 /locus_tag="TCM_043048" /note="dbxref CacaoGD:Thecc1EG043048" mRNA 3618486..3619665 /locus_tag="TCM_043048" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.84 coverage" CDS 3618983..3619189 /locus_tag="TCM_043048" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18502.1" /translation="MVAEILLAAFFTRPALSSFCDSDHSPQTLHNFPKYFFFDPSSLW WKKGFLLLHWPRDFAIHAFCYEKE" gene complement(3624692..3625547) /locus_tag="TCM_043049" /note="dbxref CacaoGD:Thecc1EG043049" mRNA complement(3624692..3625547) /locus_tag="TCM_043049" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.99 coverage" CDS complement(3625235..3625489) /locus_tag="TCM_043049" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18503.1" /translation="MAAASSIKKTPGGFMAMFLATLILCQGFANAEDKQPTLMVMGSE MPHVGESTAGMPLYRSRSDPSVLIPESMVRSTSLQRKRSP" gene 3627818..3643393 /locus_tag="TCM_043050" /note="dbxref CacaoGD:Thecc1EG043050" mRNA join(3627818..3628013,3628925..3629026,3629176..3629263, 3631547..3631749,3632840..3633184,3634278..3634382, 3634577..3634704,3636099..3636275,3636408..3636489, 3637022..3637315,3637415..3637612,3637718..3637819, 3638056..3638307,3638390..3638608,3639543..3639713, 3640718..3640903,3641360..3641827,3642054..3643393) /locus_tag="TCM_043050" /product="Regulator of nonsense transcripts 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene16888" /inference="similar to AA sequence:Phytozome:GSVIVT01016353001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2206t1" mRNA join(3627829..3628013,3628931..3629026,3629176..3629263, 3631547..3631749,3632840..3633184,3634278..3634382, 3634577..3634704,3636099..3636275,3636408..3636489, 3637022..3637315,3637415..3637612,3637718..3637819, 3638056..3638307,3638390..3638608,3639543..3639713, 3640718..3640903,3641360..3641827,3642054..3643227) /locus_tag="TCM_043050" /product="Regulator of nonsense transcripts 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene16888" /inference="similar to AA sequence:Phytozome:GSVIVT01016353001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2206t1; alternateUTRof:Thecc1EG043050t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2206t1" mRNA join(3627989..3628293,3631607..3631749,3632840..3633096, 3634576..3634704,3636099..3636275,3636408..3636489, 3637022..3637315,3637415..3637612,3637718..3637819, 3638056..3638307,3638390..3638608,3639543..3639713, 3640718..3640903,3641360..3641827,3642054..3643271) /locus_tag="TCM_043050" /product="Regulator of nonsense transcripts 2 isoform 3" /inference="alignment:exonerate-protein:2:frave:gene16888" /inference="similar to AA sequence:Phytozome:POPTR_0010s22310.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc286t20; alternateUTRof:Thecc1EG043050t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2206t1" mRNA join(3627989..3628013,3628214..3628293,3631607..3631749, 3632840..3633096,3634576..3634704,3636099..3636275, 3636408..3636489,3637022..3637315,3637415..3637612, 3637718..3637819,3638056..3638307,3638390..3638608, 3639543..3639713,3640718..3640903,3641360..3641827, 3642054..3643271) /locus_tag="TCM_043050" /product="Regulator of nonsense transcripts 2 isoform 3" /inference="alignment:exonerate-protein:2:frave:gene16888" /inference="similar to AA sequence:Phytozome:POPTR_0010s22310.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc286t14; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2206t1" CDS join(3628964..3629026,3629176..3629263,3631547..3631749, 3632840..3633184,3634278..3634382,3634577..3634704, 3636099..3636275,3636408..3636489,3637022..3637315, 3637415..3637612,3637718..3637819,3638056..3638307, 3638390..3638608,3639543..3639713,3640718..3640903, 3641360..3641827,3642054..3642554) /locus_tag="TCM_043050" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Regulator of nonsense transcripts 2 isoform 1" /protein_id="EOY18504.1" /db_xref="Phytozome:GSVIVT01016353001" /db_xref="TAIR:AT2G39260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNK8" /translation="MDHHEDECRAGGEHHGKQDDEEAVARLEEMKKSIEGKMALRQSN LNPERPDSGFLRTLDSSIRRNTAVIKKLKQINEEQKEGLMEELRSVNLSKFVSEAVTA ICDAKLKSSDIQAAVQICSLLNQRYKDFSPSLIQGLLKVFFPGKSGDDLDADRNLKAM KKRSTLKLLLELYFVGVIEDNGIFINIIKDLTSTEHLKDRDATQTNLTLLASFARQGR VFLGLPISGQEILEEFFKGLNITADQKKTFRKAFHAYYDAVTELLQSEHATLRQMEHE NAKILNAKGELNEENASSYEKLRKSYDHLYRNVSSLAEALDMQSPVMPEDSHTTRVTT GEDASSPATGKESSTLEAIWDDDDTRAFYECLPDLRAFVPAVLLGEAEPKGIEQTSKA QEQPTDSSTEADQSTAVAQDAVEASADSGNLQEGKSIEKGKDKEEKDKERNKDPDKEK GKEKDSDKKGENEKEKLKGLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRK RLVRTLFNVPRTSLELLPYYSRMVATLSTCMKDVPSMLLQMLEEEFNFLINKKDQMNI ETKIRNIRFIGELCKFRIAPAGLVFSCLKTCLDDFTHHNIDVACNLLETCGRFLYRSP ETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLHQYIR KLLFTDLDKSSIEHVLRQLRKLPWSECESYLLKCFMKVHKGKYGQIHLIASLTAGLSR YHDEFAVAVVDEVLEEIRLGLELNDYGMQQRRIAHMRFLGELYNYEHVDSSVIFETLY LILVSGHDTAEQDVLDPPEDCFRIRMVITLLQTCGHYFDRGSSKRKLDRFLIHFQRYI LSKGALPLDIEFDLQDLFAELRPNMTRYSSMEEVNAALVELEEHERTASTDKTSSEKH SDTEKPSSRTTAHSISGDRPSIFNGSEENGGVHEETGDSDSESGSGTIEPEGHDEDYL DEENHDDGCDTDEEDEDDGGPASDEDDEVHVRQKVAELDPQEVANFDQELRAVVQESM EQRKLELRGRPTLNMMIPMNVFEGSTKDHHGRVVGGESGDEALDEEAGGSREVQVKVL VKRGNKQQTKQMYIPRDCTLVQSTKQKEAAEFEEKQDIKRLVLEYNDRVEEENNGLGT QTLNWPSGNSRVYGRGNSWEGSSGRSGGPRHRHHSHSGSGAFYGRKK" CDS join(3628964..3629026,3629176..3629263,3631547..3631749, 3632840..3633184,3634278..3634382,3634577..3634704, 3636099..3636275,3636408..3636489,3637022..3637315, 3637415..3637612,3637718..3637819,3638056..3638307, 3638390..3638608,3639543..3639713,3640718..3640903, 3641360..3641827,3642054..3642554) /locus_tag="TCM_043050" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Regulator of nonsense transcripts 2 isoform 1" /protein_id="EOY18505.1" /db_xref="Phytozome:GSVIVT01016353001" /db_xref="TAIR:AT2G39260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNK8" /translation="MDHHEDECRAGGEHHGKQDDEEAVARLEEMKKSIEGKMALRQSN LNPERPDSGFLRTLDSSIRRNTAVIKKLKQINEEQKEGLMEELRSVNLSKFVSEAVTA ICDAKLKSSDIQAAVQICSLLNQRYKDFSPSLIQGLLKVFFPGKSGDDLDADRNLKAM KKRSTLKLLLELYFVGVIEDNGIFINIIKDLTSTEHLKDRDATQTNLTLLASFARQGR VFLGLPISGQEILEEFFKGLNITADQKKTFRKAFHAYYDAVTELLQSEHATLRQMEHE NAKILNAKGELNEENASSYEKLRKSYDHLYRNVSSLAEALDMQSPVMPEDSHTTRVTT GEDASSPATGKESSTLEAIWDDDDTRAFYECLPDLRAFVPAVLLGEAEPKGIEQTSKA QEQPTDSSTEADQSTAVAQDAVEASADSGNLQEGKSIEKGKDKEEKDKERNKDPDKEK GKEKDSDKKGENEKEKLKGLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRK RLVRTLFNVPRTSLELLPYYSRMVATLSTCMKDVPSMLLQMLEEEFNFLINKKDQMNI ETKIRNIRFIGELCKFRIAPAGLVFSCLKTCLDDFTHHNIDVACNLLETCGRFLYRSP ETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLHQYIR KLLFTDLDKSSIEHVLRQLRKLPWSECESYLLKCFMKVHKGKYGQIHLIASLTAGLSR YHDEFAVAVVDEVLEEIRLGLELNDYGMQQRRIAHMRFLGELYNYEHVDSSVIFETLY LILVSGHDTAEQDVLDPPEDCFRIRMVITLLQTCGHYFDRGSSKRKLDRFLIHFQRYI LSKGALPLDIEFDLQDLFAELRPNMTRYSSMEEVNAALVELEEHERTASTDKTSSEKH SDTEKPSSRTTAHSISGDRPSIFNGSEENGGVHEETGDSDSESGSGTIEPEGHDEDYL DEENHDDGCDTDEEDEDDGGPASDEDDEVHVRQKVAELDPQEVANFDQELRAVVQESM EQRKLELRGRPTLNMMIPMNVFEGSTKDHHGRVVGGESGDEALDEEAGGSREVQVKVL VKRGNKQQTKQMYIPRDCTLVQSTKQKEAAEFEEKQDIKRLVLEYNDRVEEENNGLGT QTLNWPSGNSRVYGRGNSWEGSSGRSGGPRHRHHSHSGSGAFYGRKK" mobile_element 3629393..3630076 /note="source:scaffold_4_CACTA_0506 2857 3573" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3629936..3630095 /note="source:CACAO_on_E22_A_scaffold_2 4863 5022" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(3631645..3631749,3632840..3633096,3634576..3634704, 3636099..3636275,3636408..3636489,3637022..3637315, 3637415..3637612,3637718..3637819,3638056..3638307, 3638390..3638608,3639543..3639713,3640718..3640903, 3641360..3641827,3642054..3642554) /locus_tag="TCM_043050" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Regulator of nonsense transcripts 2 isoform 3" /protein_id="EOY18506.1" /db_xref="Phytozome:POPTR_0010s22310.1" /db_xref="TAIR:AT2G39260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNK8" /translation="MEELRSVNLSKFVSEAVTAICDAKLKSSDIQAAVQICSLLNQRY KDFSPSLIQGLLKVFFPGKSGDDLDADRNLKAMKKRSTLKLLLELYFVGVIEDNGIFI NIIKDLTSTEHLKDRDATQTLRQMEHENAKILNAKGELNEENASSYEKLRKSYDHLYR NVSSLAEALDMQSPVMPEDSHTTRVTTGEDASSPATGKESSTLEAIWDDDDTRAFYEC LPDLRAFVPAVLLGEAEPKGIEQTSKAQEQPTDSSTEADQSTAVAQDAVEASADSGNL QEGKSIEKGKDKEEKDKERNKDPDKEKGKEKDSDKKGENEKEKLKGLEGTNLDALLQR LPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRTLFNVPRTSLELLPYYSRMVATLSTCM KDVPSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPAGLVFSCLKTC LDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVE NAYYLCKPPERSARVSKVRPPLHQYIRKLLFTDLDKSSIEHVLRQLRKLPWSECESYL LKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQR RIAHMRFLGELYNYEHVDSSVIFETLYLILVSGHDTAEQDVLDPPEDCFRIRMVITLL QTCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDIEFDLQDLFAELRPNMTRYSSM EEVNAALVELEEHERTASTDKTSSEKHSDTEKPSSRTTAHSISGDRPSIFNGSEENGG VHEETGDSDSESGSGTIEPEGHDEDYLDEENHDDGCDTDEEDEDDGGPASDEDDEVHV RQKVAELDPQEVANFDQELRAVVQESMEQRKLELRGRPTLNMMIPMNVFEGSTKDHHG RVVGGESGDEALDEEAGGSREVQVKVLVKRGNKQQTKQMYIPRDCTLVQSTKQKEAAE FEEKQDIKRLVLEYNDRVEEENNGLGTQTLNWPSGNSRVYGRGNSWEGSSGRSGGPRH RHHSHSGSGAFYGRKK" CDS join(3631645..3631749,3632840..3633096,3634576..3634704, 3636099..3636275,3636408..3636489,3637022..3637315, 3637415..3637612,3637718..3637819,3638056..3638307, 3638390..3638608,3639543..3639713,3640718..3640903, 3641360..3641827,3642054..3642554) /locus_tag="TCM_043050" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Regulator of nonsense transcripts 2 isoform 3" /protein_id="EOY18507.1" /db_xref="Phytozome:POPTR_0010s22310.1" /db_xref="TAIR:AT2G39260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNK8" /translation="MEELRSVNLSKFVSEAVTAICDAKLKSSDIQAAVQICSLLNQRY KDFSPSLIQGLLKVFFPGKSGDDLDADRNLKAMKKRSTLKLLLELYFVGVIEDNGIFI NIIKDLTSTEHLKDRDATQTLRQMEHENAKILNAKGELNEENASSYEKLRKSYDHLYR NVSSLAEALDMQSPVMPEDSHTTRVTTGEDASSPATGKESSTLEAIWDDDDTRAFYEC LPDLRAFVPAVLLGEAEPKGIEQTSKAQEQPTDSSTEADQSTAVAQDAVEASADSGNL QEGKSIEKGKDKEEKDKERNKDPDKEKGKEKDSDKKGENEKEKLKGLEGTNLDALLQR LPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRTLFNVPRTSLELLPYYSRMVATLSTCM KDVPSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPAGLVFSCLKTC LDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVE NAYYLCKPPERSARVSKVRPPLHQYIRKLLFTDLDKSSIEHVLRQLRKLPWSECESYL LKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQR RIAHMRFLGELYNYEHVDSSVIFETLYLILVSGHDTAEQDVLDPPEDCFRIRMVITLL QTCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDIEFDLQDLFAELRPNMTRYSSM EEVNAALVELEEHERTASTDKTSSEKHSDTEKPSSRTTAHSISGDRPSIFNGSEENGG VHEETGDSDSESGSGTIEPEGHDEDYLDEENHDDGCDTDEEDEDDGGPASDEDDEVHV RQKVAELDPQEVANFDQELRAVVQESMEQRKLELRGRPTLNMMIPMNVFEGSTKDHHG RVVGGESGDEALDEEAGGSREVQVKVLVKRGNKQQTKQMYIPRDCTLVQSTKQKEAAE FEEKQDIKRLVLEYNDRVEEENNGLGTQTLNWPSGNSRVYGRGNSWEGSSGRSGGPRH RHHSHSGSGAFYGRKK" mobile_element 3639803..3639856 /note="source:scaffold_1_CACTA_0031 15 69" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3646539..3646604) /note="source:scaffold_3_CACTA_0377 5178 5243" /mobile_element_type="transposon:TIR/CACTA" gene 3656803..3661365 /locus_tag="TCM_043051" /note="dbxref CacaoGD:Thecc1EG043051" mRNA join(3656803..3657869,3657972..3657997,3658114..3658144, 3658252..3658339,3658432..3658577,3658970..3659067, 3659162..3659283,3659649..3659765,3660161..3661365) /locus_tag="TCM_043051" /product="Ethylene-responsive transcription factor RAP2-7, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g15650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042000t3" /inference="similar to AA sequence:Phytozome:POPTR_0008s04490.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2169t2" mRNA join(3657125..3657869,3657972..3657997,3658114..3658144, 3658252..3658339,3658432..3658577,3658970..3659067, 3659162..3659369,3659649..3659765,3660161..3660647) /locus_tag="TCM_043051" /product="AP2 domain-containing transcription factor, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g15650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042000t3" /inference="similar to AA sequence:Phytozome:POPTR_0008s04490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc811t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2169t2" CDS join(3657310..3657869,3657972..3657997,3658114..3658144, 3658252..3658339,3658432..3658577,3658970..3659067, 3659162..3659283,3659649..3659765,3660161..3660415) /locus_tag="TCM_043051" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042000t3" /codon_start=1 /product="Ethylene-responsive transcription factor RAP2-7, putative isoform 1" /protein_id="EOY18508.1" /db_xref="Phytozome:POPTR_0008s04490.1" /db_xref="TAIR:AT2G28550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLZ7" /translation="MLDLNLDVVSCESSCDENKMLMNGDKLPGGVTLTHMEDSGSTNS SIINAEEVPSNAGDENSSNNDASALIFDILKKETDETTTTTITTNAEKVENPSPDFVT RQLFPVTGEKGGLELEFRASFGTKSSARPQWLNLSYAEASREAELKTVPLKPQPRKSR RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV DADINFNLSEYEEEMKQMKNMSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEAR MGQFLGKKAYDMAAMKCNGREAVTNFDPSTYEGEITNSLGGSSHNLDLSLGISAPSVA QNASSNAGDFHFQHAASARERPVFESSAPTSTGVEPQHGLTIGSKHPPILSGVYPGLL PNNEERGMEKRIEAVSTTRFSNWAWQMQGNGNITATPVIPIAASSGFSSSSATALSTA FPFSNSVQNVCLLTPATSPNNNSYYFSYRS" CDS join(3657310..3657869,3657972..3657997,3658114..3658144, 3658252..3658339,3658432..3658577,3658970..3659067, 3659162..3659289) /locus_tag="TCM_043051" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042000t3" /codon_start=1 /product="AP2 domain-containing transcription factor, putative isoform 2" /protein_id="EOY18509.1" /db_xref="Phytozome:POPTR_0008s04490.1" /db_xref="TAIR:AT2G28550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLZ7" /translation="MLDLNLDVVSCESSCDENKMLMNGDKLPGGVTLTHMEDSGSTNS SIINAEEVPSNAGDENSSNNDASALIFDILKKETDETTTTTITTNAEKVENPSPDFVT RQLFPVTGEKGGLELEFRASFGTKSSARPQWLNLSYAEASREAELKTVPLKPQPRKSR RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV DADINFNLSEYEEEMKQMKNMSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEAR MGQFLGKKAYDMAAMKCNGREAVTNFDPSTYEGEITNSLGGSSHNLDLSLGISAPSVA QNASSNAGDFHFQHAASARERPVV" mobile_element complement(3662440..3662520) /note="source:scaffold_4_CACTA_0482 6189 6269" /mobile_element_type="transposon:TIR/CACTA" gene 3662503..3667062 /locus_tag="TCM_043052" /note="dbxref CacaoGD:Thecc1EG043052" mRNA join(3662503..3663199,3663444..3663552,3664436..3664595, 3665494..3665642,3665726..3665877,3666092..3666206, 3666358..3667062) /locus_tag="TCM_043052" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016351001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011611t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016351001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00774t00002" CDS join(3662769..3663199,3663444..3663552,3664436..3664595, 3665494..3665642,3665726..3665877,3666092..3666206, 3666358..3666486) /locus_tag="TCM_043052" /note="paralog of Thecc1EG011611t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18510.1" /db_xref="Phytozome:GSVIVT01016351001" /db_xref="TAIR:AT5G13610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNB2" /translation="MWRSIRQLPSFSVRTARTQALPYPSFLSFSASLPKPQSSSSSSS SSSFYFFTPAKTLRATATSSPTTIILWTFNGSRGGGNATRGVPARCLSSIPTPQPETM VDWNDAVSCSEVGDGGDNDNGRTLEEDTKRSIPVRAYFFSTSVDLRRLVEQNKQNFIP PTSRMTNYVVLKFGNLASSPGPSAFISGSDSCFMVVFQYGSIVLFNVREHEVDEYLKI VEKHASGLLPEMRKDEYEVREKPSLNTWMQGGLDYIMLQFLNIDGIRTIGSVLGQSIA LDYYVRQVDGMVGEFTDINRGMEKTGTFTMDSKKLFQIVGKANSNLADVILKLGLFER SDIAWKDAKYAQIWEFLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKSDFLEW LIIVLISTEIVISLYDLIKRSL" gene 3669392..3672002 /locus_tag="TCM_043053" /note="dbxref CacaoGD:Thecc1EG043053" mRNA join(3669392..3669520,3670075..3670327,3670409..3670572, 3670851..3670948,3671058..3671288,3671740..3672002) /locus_tag="TCM_043053" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006352t1" /inference="similar to AA sequence:ricco:30099.m001625" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(3669512..3669520,3670075..3670327,3670409..3670572, 3670851..3670948,3671058..3671217) /locus_tag="TCM_043053" /note="dbxref ricco:30099.m001625; paralog of Thecc1EG006352t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18511.1" /translation="MSELKSGGLSAMFIKSWLIKPSSNIFILFHSGILVLIISPGCYL FVRVRQSNLDHPLRQGSWHMKSYHMLSFTEKDIIDAIESENLIDYGNRRSYQSTAVLL TERNFWSLEYDAEVAALSAIRHVNVVKLYCSITSEDSNLLLELMATWLRSRLDGVSHR KKGGRARICREQGHSFLRNKVSALRPSMRTIAQMLEEAEPCKLSDIIVLKNGENRPNG SWKNSGKLI" gene 3672552..3692431 /locus_tag="TCM_043054" /note="dbxref CacaoGD:Thecc1EG043054" mRNA join(3672552..3672706,3672939..3673156,3674112..3674650, 3674742..3675415,3684224..3684279,3691810..3691874, 3691945..3692431) /locus_tag="TCM_043054" /product="Nitrate excretion transporter 1, putative" /inference="alignment:exonerate- protein:2:TAIR:AT3G45710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043056t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04470.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc2237t1" CDS join(3672577..3672706,3672939..3673156,3674112..3674650, 3674742..3675415,3684224..3684279,3691810..3691874, 3691945..3692062) /locus_tag="TCM_043054" /note="paralog of Thecc1EG043056t1" /codon_start=1 /product="Nitrate excretion transporter 1, putative" /protein_id="EOY18512.1" /db_xref="Phytozome:POPTR_0008s04470.1" /db_xref="TAIR:AT3G45650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1E2" /translation="MVPSELEQTEGSKLSSQSATPNEDGKTTMDHKGGGWTTFPFIIG SMTGLSLVAGGWGANLIVFLINEFHVKSITATQINNVILGCNYLLPIAGAIVADTFFD SYTVIITFAFVSLLGMILLTLTTTINSLKPLLCAMGASKCPTPSKLQFAVLYIALALA SLGVGGTRFTIATMGADQFDDAKDQGIFFNWYFLALYIANCVSLTALIYIQDNVSWGL AFGICTVLNAIALVLFLSGKRFYRRIKPKRSPFLSILCVIFAAIRKRNVPGTFDSQDY YYGSVETTNIFNNGPSKSLRFLNCAALKIESEDSQSSRSNARSWKLCTVEEVEDLKTL FKIMPLWSSSILLSTTIGVLNSLAIVQVLTMDRHLGPHFKIPAGSFIMFNLLATALSI FIIDRFLHPAWQKFIPIWPLTPLRRIGIGHIINILAMMGFALIEMRRLHVVRTHQRVT NQFDYVVPISGLWLVVPLTILGIGEAFHFPGQIALYYQEFPKSLKGTSTAMISLLIAI GLYLSTVIIDLVLRKIIGWLPDNINHGRLDNPGNRSSFNHGLTPRTTLQNSSSMAKVH PYLAFDTPSIGHIINILAMIGSALVEMRRLHVV" gene complement(3676085..3677648) /locus_tag="TCM_043055" /note="dbxref CacaoGD:Thecc1EG043055" mRNA complement(join(3676085..3676292,3676984..3677178, 3677332..3677648)) /locus_tag="TCM_043055" /product="Rho guanine nucleotide exchange factor 7, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043059t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS complement(join(3676995..3677178,3677332..3677621)) /locus_tag="TCM_043055" /note="paralog of Thecc1EG043059t1" /codon_start=1 /product="Rho guanine nucleotide exchange factor 7, putative" /protein_id="EOY18513.1" /translation="MVASSSSTSWETQMVSQEQINAFHTIDRNIFSSLVLSLRRDLGE SIHVVAFLLWVEHGGNPARNLVFNIQPWSDALINALAKEAVLCLNCVKSDEFPDILQQ ASTINSMDAQHRVEQNLEASRFYGLWTRPTLPVFNNYNSEVGIFGDQNMGNKQVF" gene 3678893..3684612 /locus_tag="TCM_043056" /note="dbxref CacaoGD:Thecc1EG043056" mRNA join(3678893..3679054,3679439..3679480,3680068..3680183, 3680775..3680826,3681400..3681516,3681749..3681966, 3682923..3683448,3684080..3684151,3684239..3684612) /locus_tag="TCM_043056" /product="Nitrate excretion transporter 1, putative" /inference="alignment:exonerate- protein:2:ricco:29923.m000821" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043054t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc22271t1" CDS join(3678934..3679054,3679439..3679480,3680068..3680183, 3680775..3680826,3681400..3681516,3681749..3681966, 3682923..3683448,3684080..3684151,3684239..3684399) /locus_tag="TCM_043056" /note="paralog of Thecc1EG043054t1" /codon_start=1 /product="Nitrate excretion transporter 1, putative" /protein_id="EOY18514.1" /translation="MVVFQYGSLVIFNVREHEVDEYLKIVEKHASGLLPEMRKDALFV TCYVVANKEEGHQMILRLRLLDSLMSINIIETAMACGIWWSEAPGGYYVIGISLARNL DMFSLLRIELEQIEGSKLSSQRTSPNEDGKTTMDHKGGGWTTFLFIIGSMTGLSLVAG GWGANLIVFLINEFHVKSITATQINNVILGCNYLLPIAGAIVADTFFDSYTVIITFAF VSLLGMILLTLTTTIHSLKPSPCAMGASTCPTPSKLQFAVLYIALALASLGVGGTRFT IATMGADQFDDAKDQGIFFNWYFLALYIANCVSLTALIYIQDNVSWGLAFGICTVLNA IALVLFLSGKRFYRRIKPKRSPFLSILCVIFAAIRKRNVPGTFGSQDYYYGSVETTNI FNNGPSIGEAFHFPGQIALYYQEFPKSLKGWLPDNINHGRLDNVFWMLAVIGVVNLGY YLVCAKLFKYQNLEKSNDSGSHVH" mobile_element 3680049..3681153 /note="source:INTACT505_F28_scaffold_3-int 10215 11334" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3684890..3686469 /locus_tag="TCM_043057" /note="dbxref CacaoGD:Thecc1EG043057" mRNA join(3684890..3685430,3685718..3686469) /locus_tag="TCM_043057" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.32 coverage" CDS 3686066..3686389 /locus_tag="TCM_043057" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18515.1" /translation="MMKETKRGPIFCQSLNQRNEIVGVFEIIVRECITLYTIQAEGSL LSQCIDQIIRPGLNIENQVSSRVIAISNPKEESHHVNGLAIITSEVQNKPGKDVSING MKHID" gene 3687539..3692101 /locus_tag="TCM_043058" /note="dbxref CacaoGD:Thecc1EG043058" mRNA join(3687539..3687935,3688835..3688987,3689224..3689263, 3689796..3690012,3691039..3692101) /locus_tag="TCM_043058" /product="Nitrate excretion transporter1, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043054t1" /inference="similar to AA sequence:frave:gene23245" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.19 coverage" CDS 3691042..3691632 /locus_tag="TCM_043058" /note="dbxref frave:gene23245; paralog of Thecc1EG043054t1" /codon_start=1 /product="Nitrate excretion transporter1, putative" /protein_id="EOY18516.1" /db_xref="TAIR:AT3G45650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1E2" /translation="MILLTLTATIHSLKPLPCAMGAFKCPTPSKLQFAVLYIALALAS LGVGGTRFTIATMGDDQFDNAKDQGIFFNWYFLALYVANCVSLTAIIHIQDNVSWGLA LGICIVVNATALVLFLSGKRFYRRIKPKGSPFLSILCVIFAAIQKRNAPGPFGSQDYY YGSVETRNIFKNDPSKSFRYYSFHFKYKSKNLKYAC" gene complement(3692754..3694450) /locus_tag="TCM_043059" /note="dbxref CacaoGD:Thecc1EG043059" mRNA complement(join(3692754..3693401,3693533..3694450)) /locus_tag="TCM_043059" /product="Rho guanine nucleotide exchange factor 7, putative" /inference="alignment:exonerate- protein:2:ricco:29923.m000819" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043062t1" /inference="similar to AA sequence:ricco:29923.m000819" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2188t1" CDS complement(join(3693182..3693401,3693533..3694416)) /locus_tag="TCM_043059" /note="dbxref ricco:29923.m000819; paralog of Thecc1EG043062t1" /codon_start=1 /product="Rho guanine nucleotide exchange factor 7, putative" /protein_id="EOY18517.1" /db_xref="TAIR:AT1G49290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SD45" /translation="MVASSSSASWETQMVSQEQINAFHTIDRNIFARLVLNLRRDLGE SIHVMAFLLWVEHVDNPARNLVFNIQPWSDTLINALAKEAVLCLNCIKSDEFPYNNFK DSNYLIPLIQGLTKNWASLRFFHHNRLRIIPGIIQNIQDVCFRAFRDIFKLASTINSM DAQRRSEQSLELSRFYGPLTRPTLPVFNDYNSGVGNFSDQNMGNKQVFWPNWNSDNSS FSQQVYHHNIKTQIQSLDEEMEELLNNTHSICTKGLEENNNNNNNNQEVPAEDRTIFL TFSKGYSLSEKDVTDFFARKFGDNFIERVEMQEVLRGEQPLFAKLVLHSASGLATILN GVRKAKYSIKGKHVWARKFEHRYPQVTSPSHHS" mobile_element complement(3696396..3697088) /note="source:scaffold_10_CACTA_0130 8891 9603" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3696875..3697377) /note="source:CACAO_on_E238_scaffold_8 1928 2351" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3697112..3697864) /note="source:scaffold_10_CACTA_0130 8380 9114" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3697881..3698209) /note="source:scaffold_10_CACTA_0130 6254 6574" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3698180..3698250) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3898 3969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3698383..3698464) /note="source:CACAO_M_S_E122136_F76_scaffold_10 13621 13701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3699983..3700082 /note="source:INTACT714_F310_scaffold_9-int 10185 10283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3699993..3700509) /note="source:CACAO_on_E310_scaffold_10 1 517" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3700988..3716888) /note="source:INTACT1798F_F56_scaffold_10-int 1 15901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3720994..3721167 /note="source:CACAO_Again_on_E205_scaffold_9 202 375" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(3721046..3721159) /note="source:scaffold_6_CACTA_0713 7861 8396" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3721160..3721849 /note="source:CACAO_Again_on_E205_scaffold_9 8324 8860" /mobile_element_type="transposon:TIR/hAT" gene 3721842..3728480 /locus_tag="TCM_043064" /note="dbxref CacaoGD:Thecc1EG043064" mRNA join(3721842..3722049,3722163..3722558,3723703..3723843, 3724002..3724485,3724730..3724847,3725316..3725437, 3725934..3726019,3726657..3726766,3726857..3726907, 3727324..3727388,3727466..3728480) /locus_tag="TCM_043064" /product="D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22350.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016348001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2198t4" mobile_element complement(3721850..3721911) /note="source:scaffold_6_CACTA_0713 7558 7860" /mobile_element_type="transposon:TIR/CACTA" mRNA join(3723699..3723843,3724002..3724485,3724730..3724847, 3725316..3725437,3725934..3726019,3726657..3726766, 3726860..3726889,3727100..3727388,3727466..3728478) /locus_tag="TCM_043064" /product="D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22350.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016348001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2198t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2198t4" CDS join(3723753..3723843,3724002..3724485,3724730..3724847, 3725316..3725437,3725934..3726019,3726657..3726766, 3726857..3726907,3727324..3727388,3727466..3727721) /locus_tag="TCM_043064" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein, putative isoform 1" /protein_id="EOY18518.1" /db_xref="Phytozome:GSVIVT01016348001" /db_xref="TAIR:AT3G54970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU12" /translation="MNSTRFLFSNGVVSRFSEAPPVTTFLESLPGAYTTTRTHENGST LLFWERHITRLANSARILLNSKPELIFKPTKKYPLFFSPLSITSSMKWESRIRSLVNN SMNQVLPIALKERSDGEELAVTALVCGDFEKLKEMKNVGDDDGFFGVLDVHLHVGNYV PPVFGIEENGAHLALVGRGRDVAAAKYSAWVRLRMPLDKLRPPSVTELLLSNDGDRIL EGCITNFFVICRRDKSEAEGNFPHDYDSAYSVEVQTAPITEGVLPGVIRQLVIEVCLS KGIPVREVAPSWEKHGLWEEAFVTNSLRVIQHVETIKVPSSWESLGTKCSEGISWMEK KFEQGPGMITKVIQVKFDEQVEELLLDFRTYIIKTEILLEQSWLIRGVLPRLLTNHVA CKSTRIILPFWIYTGSFLFLPVLCLNCFISTQSGFTDLVLIPFDFTRELSPSQAEMQI FKHSTQAHCQ" CDS join(3723753..3723843,3724002..3724485,3724730..3724847, 3725316..3725437,3725934..3726019,3726657..3726766, 3726860..3726889,3727100..3727156) /locus_tag="TCM_043064" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein, putative isoform 2" /protein_id="EOY18519.1" /db_xref="Phytozome:GSVIVT01016348001" /db_xref="TAIR:AT3G54970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU12" /translation="MNSTRFLFSNGVVSRFSEAPPVTTFLESLPGAYTTTRTHENGST LLFWERHITRLANSARILLNSKPELIFKPTKKYPLFFSPLSITSSMKWESRIRSLVNN SMNQVLPIALKERSDGEELAVTALVCGDFEKLKEMKNVGDDDGFFGVLDVHLHVGNYV PPVFGIEENGAHLALVGRGRDVAAAKYSAWVRLRMPLDKLRPPSVTELLLSNDGDRIL EGCITNFFVICRRDKSEAEGNFPHDYDSAYSVEVQTAPITEGVLPGVIRQLVIEVCLS KGIPVREVAPSWEKHGLWEEAFVTNSLRVIQHVETIKVPSSWESLGTKCSEGISWMEK KFEGPGMITKVIQKEIIERACMESYPLNEFL" gene 3729838..3735274 /locus_tag="TCM_043066" /note="dbxref CacaoGD:Thecc1EG043066" mRNA join(3729838..3730001,3730397..3730665,3731943..3732072, 3732428..3732436,3732554..3732631,3732740..3732778, 3734912..3735274) /locus_tag="TCM_043066" /product="Nuclear transcription factor Y subunit B-10 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29923.m000817" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022083t1" /inference="similar to AA sequence:ricco:29923.m000817" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc7929t11; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc230t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4191t1" mRNA join(3730270..3730665,3731943..3732072,3732548..3732631, 3732740..3732778,3734912..3735274) /locus_tag="TCM_043066" /product="Nuclear transcription factor Y subunit B-10 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29923.m000817" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022083t3" /inference="similar to AA sequence:ricco:29923.m000817" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc226t3; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc230t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4191t1" mRNA join(3730270..3730299,3730397..3730665,3731943..3732072, 3732428..3732433,3732548..3732631,3732740..3732778, 3734912..3735274) /locus_tag="TCM_043066" /product="Nuclear transcription factor Y subunit B-10 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29923.m000817" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022083t1" /inference="similar to AA sequence:ricco:29923.m000817" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc230t3; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc230t3" mRNA join(3730412..3730665,3731943..3732072,3732428..3732436, 3732554..3732631,3732740..3732778,3734912..3735274) /locus_tag="TCM_043066" /product="Nuclear transcription factor Y subunit B-10 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29923.m000817" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022083t1" /inference="similar to AA sequence:ricco:29923.m000817" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc7929t2; alternateUTRof:Thecc1EG043066t2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc230t3; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc226t6" CDS join(3730433..3730665,3731943..3732072,3732428..3732436, 3732554..3732631,3732740..3732778,3734912..3734959) /locus_tag="TCM_043066" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29923.m000817; paralog of Thecc1EG022083t1" /codon_start=1 /product="Nuclear transcription factor Y subunit B-10 isoform 2" /protein_id="EOY18521.1" /db_xref="TAIR:AT2G37060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_E0WC42" /translation="MADGMQAGPTSPAGGSHESGGEQSSPHSNVREQDRYLPIANISR IMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT LGFEDYIEPLKVYLGRYRELEVTKGSARGGDGSLKRDAAGGLAAQNAQFAIQGSLNYI TSQAQGQHMIVPSMHGNE" CDS join(3730433..3730665,3731943..3732072,3732428..3732436, 3732554..3732631,3732740..3732778,3734912..3734959) /locus_tag="TCM_043066" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29923.m000817; paralog of Thecc1EG022083t1" /codon_start=1 /product="Nuclear transcription factor Y subunit B-10 isoform 2" /protein_id="EOY18523.1" /db_xref="TAIR:AT2G37060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_E0WC42" /translation="MADGMQAGPTSPAGGSHESGGEQSSPHSNVREQDRYLPIANISR IMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT LGFEDYIEPLKVYLGRYRELEVTKGSARGGDGSLKRDAAGGLAAQNAQFAIQGSLNYI TSQAQGQHMIVPSMHGNE" CDS join(3730433..3730665,3731943..3732072,3732428..3732433, 3732548..3732631,3732740..3732778,3734912..3734959) /locus_tag="TCM_043066" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29923.m000817; paralog of Thecc1EG022083t1" /codon_start=1 /product="Nuclear transcription factor Y subunit B-10 isoform 1" /protein_id="EOY18520.1" /db_xref="TAIR:AT2G37060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_E0WC42" /translation="MADGMQAGPTSPAGGSHESGGEQSSPHSNVREQDRYLPIANISR IMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT LGFEDYIEPLKVYLGRYRELEGDTKGSARGGDGSLKRDAAGGLAAQNAQFAIQGSLNY ITSQAQGQHMIVPSMHGNE" CDS join(3730433..3730665,3731943..3732072,3732548..3732631, 3732740..3732778,3734912..3734959) /locus_tag="TCM_043066" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29923.m000817; paralog of Thecc1EG022083t3" /codon_start=1 /product="Nuclear transcription factor Y subunit B-10 isoform 3" /protein_id="EOY18522.1" /db_xref="TAIR:AT2G37060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_E0WC42" /translation="MADGMQAGPTSPAGGSHESGGEQSSPHSNVREQDRYLPIANISR IMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT LGFEDYIEPLKVYLGRYREGDTKGSARGGDGSLKRDAAGGLAAQNAQFAIQGSLNYIT SQAQGQHMIVPSMHGNE" gene 3736150..3737814 /locus_tag="TCM_043068" /note="dbxref CacaoGD:Thecc1EG043068" mRNA 3736150..3737814 /locus_tag="TCM_043068" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.61 coverage" CDS 3736580..3736879 /locus_tag="TCM_043068" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18524.1" /translation="MQNQTKPKVRRFAFLFVRKNLLTTTRRTQHKEEEEEQEEERKIK PERVMVSSLLIPQRDHHFLPARASQLNPTLPTWLLQRSCLSMSENSLLAASHATT" gene 3744871..3747923 /locus_tag="TCM_043069" /note="dbxref CacaoGD:Thecc1EG043069" mRNA join(3744871..3745282,3745388..3745529,3745706..3745829, 3745919..3745961,3746588..3746825,3747561..3747923) /locus_tag="TCM_043069" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016345001" /inference="similar to AA sequence:Phytozome:POPTR_0008s04430.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc634t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc634t8" mRNA join(3744872..3745282,3745388..3745529,3745706..3745829, 3745919..3745961,3746588..3746825,3747541..3747862) /locus_tag="TCM_043069" /product="RNA-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016345001" /inference="similar to AA sequence:Phytozome:POPTR_0008s04430.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc654t8_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2233t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc634t8" mRNA join(3744872..3745282,3745388..3745529,3745706..3745829, 3745919..3745961,3746588..3746825,3747567..3747862) /locus_tag="TCM_043069" /product="RNA-binding family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016345001" /inference="similar to AA sequence:Phytozome:POPTR_0008s04430.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc654t3_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc634t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2233t2" CDS join(3745100..3745282,3745388..3745529,3745706..3745829, 3745919..3745961,3746588..3746825,3747561..3747601) /locus_tag="TCM_043069" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY18525.1" /db_xref="Phytozome:POPTR_0008s04430.1" /db_xref="TAIR:AT3G54770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9P7Z9" /translation="MTMSTNIGQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGEILE AVIISDKVTGRSKGYGFVTFKDPEAAKKACEDATPIINGRRANCNLASLGARRPRSAS AAPPPQGSNVGPRAASAAPANPVQWYYPAGTPASPFHHQHHQAVPFYGYSPAYIAADI SYNHKLSYTGGTYMNGPFSQVYPGQALVGANTLMPMYPFYHYHQSQTMGLPAHVFPPT TAGPITTVPAAAIMSKPAAAMAPNSGTVGTGEGFKKVG" CDS join(3745100..3745282,3745388..3745529,3745706..3745829, 3745919..3745961,3746588..3746825,3747567..3747601) /locus_tag="TCM_043069" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 3" /protein_id="EOY18527.1" /db_xref="Phytozome:POPTR_0008s04430.1" /db_xref="TAIR:AT3G54770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9P7Z9" /translation="MTMSTNIGQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGEILE AVIISDKVTGRSKGYGFVTFKDPEAAKKACEDATPIINGRRANCNLASLGARRPRSAS AAPPPQGSNVGPRAASAAPANPVQWYYPAGTPASPFHHQHHQAVPFYGYSPAYIAADI SYNHKLSYTGGTYMNGPFSQVYPGQALVGANTLMPMYPFYHYHQSQTMGLPAHVFPPT TAGPITTVPAAAIMSKPAAAMAPNSVGTGEGFKKVG" CDS join(3745100..3745282,3745388..3745529,3745706..3745829, 3745919..3745961,3746588..3746825,3747541..3747560) /locus_tag="TCM_043069" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 2" /protein_id="EOY18526.1" /db_xref="Phytozome:POPTR_0008s04430.1" /db_xref="TAIR:AT3G54770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9P7Z9" /translation="MTMSTNIGQFGDTTLTKVFVGGLAWETPKEAMREHFEKYGEILE AVIISDKVTGRSKGYGFVTFKDPEAAKKACEDATPIINGRRANCNLASLGARRPRSAS AAPPPQGSNVGPRAASAAPANPVQWYYPAGTPASPFHHQHHQAVPFYGYSPAYIAADI SYNHKLSYTGGTYMNGPFSQVYPGQALVGANTLMPMYPFYHYHQSQTMGLPAHVFPPT TAGPITTVPAAAIMSKPAAAMAPNSVCLAVE" gene 3748285..3780423 /locus_tag="TCM_043070" /note="dbxref CacaoGD:Thecc1EG043070" mRNA join(3748285..3748561,3751197..3752093,3752209..3752267, 3752347..3752446,3752547..3756468,3757078..3757665, 3760789..3761210,3780386..3780423) /locus_tag="TCM_043070" /product="Tudor/PWWP/MBT superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23235" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006205t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22390.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc14t10" mRNA join(3750651..3750817,3751268..3752093,3752209..3752267, 3752347..3752446,3752547..3756539,3757123..3757150) /locus_tag="TCM_043070" /product="Tudor/PWWP/MBT superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23235" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006205t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22390.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7849t2; alternateUTRof:Thecc1EG043070t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc14t10" mRNA join(3750651..3750817,3751268..3752093,3752209..3752267, 3752347..3752446,3752547..3756413,3757123..>3757150) /locus_tag="TCM_043070" /product="Tudor/PWWP/MBT superfamily protein isoform 6" /inference="alignment:exonerate-protein:2:frave:gene23235" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006205t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22390.1" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc14t2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc14t10" mRNA join(3750651..3750817,3751268..3752093,3752209..3752267, 3752347..3752446,3752547..3756413,3757078..3757104) /locus_tag="TCM_043070" /product="Tudor/PWWP/MBT superfamily protein isoform 5" /inference="alignment:exonerate-protein:2:frave:gene23235" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006205t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22390.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc14t10; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc14t10" mRNA join(3750661..3750817,3751268..3752093,3752209..3752267, 3752347..3752446,3752547..3756469,3757078..3759204) /locus_tag="TCM_043070" /product="Tudor/PWWP/MBT superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23235" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006205t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22390.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2349t1; alternateUTRof:Thecc1EG043070t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc14t10" mRNA join(3751006..3752093,3752209..3752267,3752347..3752446, 3752547..3755580,3756057..3756413,3757078..3758028) /locus_tag="TCM_043070" /product="Tudor/PWWP/MBT superfamily protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene23235" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006205t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22390.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc14t11; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc14t10" CDS join(3751280..3752093,3752209..3752267,3752347..3752446, 3752547..3756413,3757123..>3757148) /locus_tag="TCM_043070" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG006205t1" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein isoform 6" /protein_id="EOY18533.1" /db_xref="Phytozome:POPTR_0010s22390.1" /db_xref="TAIR:AT5G02950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU16" /translation="MDEAKEKGGSGSIVTESSVTVSETAVETMACEGQVQIEEGGEGG PINGDDIMVEVLGSHVYVDGICTTDGGGGGGVGGDSNDEAVCGHDEPGEVGLEGNLTS LDGEDDTAGDLGSRSDVSCGETLSAIERGKDQNEVNGAGIEGSSAPDSSAGGEACQNA EPSSRMDKGGGDANQARETQKVGDLDGNELNHENQSAVVCLSAASEDSNVQTQAVNEA PMTIDGEDLNTTDGARETISGRTKKAADVDADFNSLDVKTQVTVEDVPHCEAKDLVSS IQPTELVVEGQLDEKVSLNMEIDKQGTDSEQCQMEVNTSHQIIKNHATGNDLSLKAGT DIDRGEEVDLCMGEAVDVENQNSDAKIVGSDAEQDVKVQEDSIKVETVGIGTENHKNA CEGSELLGHQKDAFVGSDGGEVLKVNNNVSNQISTSVASDKVLHSSGNEDQLAKSSVS EDDSSVGQDLYVEEQVTGAEQDGLDQVQEMEVEEHDTDSEQPTNIDEKTVKRTVLKCA SAVKVHQAKYLLLSEEEGEFSVSGLVWGKVRSHPWWPGQIFDPSDASEKAVKYHKKDC FLVAYFGDRTFAWNEASLLKPFRTHFSQIEKQSNSESFQNAVNCALEEVSRRAELGLA CSCMPQDAYDKIKFQKVENTGVRQESSIRDGVDVSLSASSFEPDKLVDYMKALAESPA GGGDRLDLVIVKAQLLAFYRLKGYHQLPEFQSCGGLSENEANTSHSEENMYFGEEIEH TTPMDTDAEQISTGQETSMSQRSSYLKRKHNLKDGLYPSKKERSLSELMDETFDSPDV ENGTDGIANRLPSSSSGKKRKAVDSFDDSVVQEGRKTISLAKVSLTTPHFPKPSFKIG ECIRRAASQMTGSPLIPKGKLDGGSENTAADGYDVPFDNSEDAQRKRMNVTAEYSSLD ELLSQLHLAACDPMKSYSSFNIFISFFSDFRDSLVVDQLPGDKAGGKRKKSPNSIIGF PETFEFEDMNDTYWTDRIVQNGSEEHPLHGNGRGQYQIVPVELEKPLQKGRKSRKRYS DVNHDLTAEKPPGYVDERAPAELVMNFSEINSVPSETKLNKMFKHFGPLKESETEVDR ETSRARVVFRRSSDAEVAYNSAGKFNIFGSVAVNYQLNYTISESFKASLYAPTLAEET PLMASTLGGDHGLVASSLSETSLIAPSLGEEASFMVSTLGEDTLSIATTFHEESSMIA SSLGDDTLAIPTTLGDGASIIATTMYEETLPIASTTGEGTMGVATTIGDQSFMVATTV GEQFSTVVTTISEQTSTVATPMGEEDSFITTTLSKETSTITTTLGGETSMVNVSLDEE TSSMATLGEETPSILASLGEETPSIPTSLDEETPSVPTTLGEEILTIPSTLGEETPIY PVTLAEETPTITITLGQETPDLHTTLGAETPVIPSTLDKETPVIPPTLGEETPAIPPT LSDEISTITVTLGQETQTIPTIVAEETTTVLATLVEETTTIPTTLHEETLAVPTTLAE KTPTIPTTLGEETATIPTTLGKETESIPKTLGEETSTNSTTLGEETSTIPTTLAEEIP TNPITVTEETSTIPTTLGEETVAIPTTLGLEASTVLTTTGEEPSTVSTTMGMETLPPA VAEGLIQLATED" CDS join(3751280..3752093,3752209..3752267,3752347..3752446, 3752547..3756413,3757078..3757094) /locus_tag="TCM_043070" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG006205t1" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein isoform 5" /protein_id="EOY18532.1" /db_xref="Phytozome:POPTR_0010s22390.1" /db_xref="TAIR:AT5G02950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU16" /translation="MDEAKEKGGSGSIVTESSVTVSETAVETMACEGQVQIEEGGEGG PINGDDIMVEVLGSHVYVDGICTTDGGGGGGVGGDSNDEAVCGHDEPGEVGLEGNLTS LDGEDDTAGDLGSRSDVSCGETLSAIERGKDQNEVNGAGIEGSSAPDSSAGGEACQNA EPSSRMDKGGGDANQARETQKVGDLDGNELNHENQSAVVCLSAASEDSNVQTQAVNEA PMTIDGEDLNTTDGARETISGRTKKAADVDADFNSLDVKTQVTVEDVPHCEAKDLVSS IQPTELVVEGQLDEKVSLNMEIDKQGTDSEQCQMEVNTSHQIIKNHATGNDLSLKAGT DIDRGEEVDLCMGEAVDVENQNSDAKIVGSDAEQDVKVQEDSIKVETVGIGTENHKNA CEGSELLGHQKDAFVGSDGGEVLKVNNNVSNQISTSVASDKVLHSSGNEDQLAKSSVS EDDSSVGQDLYVEEQVTGAEQDGLDQVQEMEVEEHDTDSEQPTNIDEKTVKRTVLKCA SAVKVHQAKYLLLSEEEGEFSVSGLVWGKVRSHPWWPGQIFDPSDASEKAVKYHKKDC FLVAYFGDRTFAWNEASLLKPFRTHFSQIEKQSNSESFQNAVNCALEEVSRRAELGLA CSCMPQDAYDKIKFQKVENTGVRQESSIRDGVDVSLSASSFEPDKLVDYMKALAESPA GGGDRLDLVIVKAQLLAFYRLKGYHQLPEFQSCGGLSENEANTSHSEENMYFGEEIEH TTPMDTDAEQISTGQETSMSQRSSYLKRKHNLKDGLYPSKKERSLSELMDETFDSPDV ENGTDGIANRLPSSSSGKKRKAVDSFDDSVVQEGRKTISLAKVSLTTPHFPKPSFKIG ECIRRAASQMTGSPLIPKGKLDGGSENTAADGYDVPFDNSEDAQRKRMNVTAEYSSLD ELLSQLHLAACDPMKSYSSFNIFISFFSDFRDSLVVDQLPGDKAGGKRKKSPNSIIGF PETFEFEDMNDTYWTDRIVQNGSEEHPLHGNGRGQYQIVPVELEKPLQKGRKSRKRYS DVNHDLTAEKPPGYVDERAPAELVMNFSEINSVPSETKLNKMFKHFGPLKESETEVDR ETSRARVVFRRSSDAEVAYNSAGKFNIFGSVAVNYQLNYTISESFKASLYAPTLAEET PLMASTLGGDHGLVASSLSETSLIAPSLGEEASFMVSTLGEDTLSIATTFHEESSMIA SSLGDDTLAIPTTLGDGASIIATTMYEETLPIASTTGEGTMGVATTIGDQSFMVATTV GEQFSTVVTTISEQTSTVATPMGEEDSFITTTLSKETSTITTTLGGETSMVNVSLDEE TSSMATLGEETPSILASLGEETPSIPTSLDEETPSVPTTLGEEILTIPSTLGEETPIY PVTLAEETPTITITLGQETPDLHTTLGAETPVIPSTLDKETPVIPPTLGEETPAIPPT LSDEISTITVTLGQETQTIPTIVAEETTTVLATLVEETTTIPTTLHEETLAVPTTLAE KTPTIPTTLGEETATIPTTLGKETESIPKTLGEETSTNSTTLGEETSTIPTTLAEEIP TNPITVTEETSTIPTTLGEETVAIPTTLGLEASTVLTTTGEEPSTVSTTMGMETLPPA VAEGANTS" CDS join(3751280..3752093,3752209..3752267,3752347..3752446, 3752547..3756433) /locus_tag="TCM_043070" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG006205t1" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein isoform 1" /protein_id="EOY18528.1" /db_xref="Phytozome:POPTR_0010s22390.1" /db_xref="TAIR:AT5G02950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU16" /translation="MDEAKEKGGSGSIVTESSVTVSETAVETMACEGQVQIEEGGEGG PINGDDIMVEVLGSHVYVDGICTTDGGGGGGVGGDSNDEAVCGHDEPGEVGLEGNLTS LDGEDDTAGDLGSRSDVSCGETLSAIERGKDQNEVNGAGIEGSSAPDSSAGGEACQNA EPSSRMDKGGGDANQARETQKVGDLDGNELNHENQSAVVCLSAASEDSNVQTQAVNEA PMTIDGEDLNTTDGARETISGRTKKAADVDADFNSLDVKTQVTVEDVPHCEAKDLVSS IQPTELVVEGQLDEKVSLNMEIDKQGTDSEQCQMEVNTSHQIIKNHATGNDLSLKAGT DIDRGEEVDLCMGEAVDVENQNSDAKIVGSDAEQDVKVQEDSIKVETVGIGTENHKNA CEGSELLGHQKDAFVGSDGGEVLKVNNNVSNQISTSVASDKVLHSSGNEDQLAKSSVS EDDSSVGQDLYVEEQVTGAEQDGLDQVQEMEVEEHDTDSEQPTNIDEKTVKRTVLKCA SAVKVHQAKYLLLSEEEGEFSVSGLVWGKVRSHPWWPGQIFDPSDASEKAVKYHKKDC FLVAYFGDRTFAWNEASLLKPFRTHFSQIEKQSNSESFQNAVNCALEEVSRRAELGLA CSCMPQDAYDKIKFQKVENTGVRQESSIRDGVDVSLSASSFEPDKLVDYMKALAESPA GGGDRLDLVIVKAQLLAFYRLKGYHQLPEFQSCGGLSENEANTSHSEENMYFGEEIEH TTPMDTDAEQISTGQETSMSQRSSYLKRKHNLKDGLYPSKKERSLSELMDETFDSPDV ENGTDGIANRLPSSSSGKKRKAVDSFDDSVVQEGRKTISLAKVSLTTPHFPKPSFKIG ECIRRAASQMTGSPLIPKGKLDGGSENTAADGYDVPFDNSEDAQRKRMNVTAEYSSLD ELLSQLHLAACDPMKSYSSFNIFISFFSDFRDSLVVDQLPGDKAGGKRKKSPNSIIGF PETFEFEDMNDTYWTDRIVQNGSEEHPLHGNGRGQYQIVPVELEKPLQKGRKSRKRYS DVNHDLTAEKPPGYVDERAPAELVMNFSEINSVPSETKLNKMFKHFGPLKESETEVDR ETSRARVVFRRSSDAEVAYNSAGKFNIFGSVAVNYQLNYTISESFKASLYAPTLAEET PLMASTLGGDHGLVASSLSETSLIAPSLGEEASFMVSTLGEDTLSIATTFHEESSMIA SSLGDDTLAIPTTLGDGASIIATTMYEETLPIASTTGEGTMGVATTIGDQSFMVATTV GEQFSTVVTTISEQTSTVATPMGEEDSFITTTLSKETSTITTTLGGETSMVNVSLDEE TSSMATLGEETPSILASLGEETPSIPTSLDEETPSVPTTLGEEILTIPSTLGEETPIY PVTLAEETPTITITLGQETPDLHTTLGAETPVIPSTLDKETPVIPPTLGEETPAIPPT LSDEISTITVTLGQETQTIPTIVAEETTTVLATLVEETTTIPTTLHEETLAVPTTLAE KTPTIPTTLGEETATIPTTLGKETESIPKTLGEETSTNSTTLGEETSTIPTTLAEEIP TNPITVTEETSTIPTTLGEETVAIPTTLGLEASTVLTTTGEEPSTVSTTMGMETLPPA VAEGEESAT" CDS join(3751280..3752093,3752209..3752267,3752347..3752446, 3752547..3756433) /locus_tag="TCM_043070" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG006205t1" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein isoform 1" /protein_id="EOY18529.1" /db_xref="Phytozome:POPTR_0010s22390.1" /db_xref="TAIR:AT5G02950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU16" /translation="MDEAKEKGGSGSIVTESSVTVSETAVETMACEGQVQIEEGGEGG PINGDDIMVEVLGSHVYVDGICTTDGGGGGGVGGDSNDEAVCGHDEPGEVGLEGNLTS LDGEDDTAGDLGSRSDVSCGETLSAIERGKDQNEVNGAGIEGSSAPDSSAGGEACQNA EPSSRMDKGGGDANQARETQKVGDLDGNELNHENQSAVVCLSAASEDSNVQTQAVNEA PMTIDGEDLNTTDGARETISGRTKKAADVDADFNSLDVKTQVTVEDVPHCEAKDLVSS IQPTELVVEGQLDEKVSLNMEIDKQGTDSEQCQMEVNTSHQIIKNHATGNDLSLKAGT DIDRGEEVDLCMGEAVDVENQNSDAKIVGSDAEQDVKVQEDSIKVETVGIGTENHKNA CEGSELLGHQKDAFVGSDGGEVLKVNNNVSNQISTSVASDKVLHSSGNEDQLAKSSVS EDDSSVGQDLYVEEQVTGAEQDGLDQVQEMEVEEHDTDSEQPTNIDEKTVKRTVLKCA SAVKVHQAKYLLLSEEEGEFSVSGLVWGKVRSHPWWPGQIFDPSDASEKAVKYHKKDC FLVAYFGDRTFAWNEASLLKPFRTHFSQIEKQSNSESFQNAVNCALEEVSRRAELGLA CSCMPQDAYDKIKFQKVENTGVRQESSIRDGVDVSLSASSFEPDKLVDYMKALAESPA GGGDRLDLVIVKAQLLAFYRLKGYHQLPEFQSCGGLSENEANTSHSEENMYFGEEIEH TTPMDTDAEQISTGQETSMSQRSSYLKRKHNLKDGLYPSKKERSLSELMDETFDSPDV ENGTDGIANRLPSSSSGKKRKAVDSFDDSVVQEGRKTISLAKVSLTTPHFPKPSFKIG ECIRRAASQMTGSPLIPKGKLDGGSENTAADGYDVPFDNSEDAQRKRMNVTAEYSSLD ELLSQLHLAACDPMKSYSSFNIFISFFSDFRDSLVVDQLPGDKAGGKRKKSPNSIIGF PETFEFEDMNDTYWTDRIVQNGSEEHPLHGNGRGQYQIVPVELEKPLQKGRKSRKRYS DVNHDLTAEKPPGYVDERAPAELVMNFSEINSVPSETKLNKMFKHFGPLKESETEVDR ETSRARVVFRRSSDAEVAYNSAGKFNIFGSVAVNYQLNYTISESFKASLYAPTLAEET PLMASTLGGDHGLVASSLSETSLIAPSLGEEASFMVSTLGEDTLSIATTFHEESSMIA SSLGDDTLAIPTTLGDGASIIATTMYEETLPIASTTGEGTMGVATTIGDQSFMVATTV GEQFSTVVTTISEQTSTVATPMGEEDSFITTTLSKETSTITTTLGGETSMVNVSLDEE TSSMATLGEETPSILASLGEETPSIPTSLDEETPSVPTTLGEEILTIPSTLGEETPIY PVTLAEETPTITITLGQETPDLHTTLGAETPVIPSTLDKETPVIPPTLGEETPAIPPT LSDEISTITVTLGQETQTIPTIVAEETTTVLATLVEETTTIPTTLHEETLAVPTTLAE KTPTIPTTLGEETATIPTTLGKETESIPKTLGEETSTNSTTLGEETSTIPTTLAEEIP TNPITVTEETSTIPTTLGEETVAIPTTLGLEASTVLTTTGEEPSTVSTTMGMETLPPA VAEGEESAT" CDS join(3751280..3752093,3752209..3752267,3752347..3752446, 3752547..3756433) /locus_tag="TCM_043070" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG006205t1" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein isoform 1" /protein_id="EOY18531.1" /db_xref="Phytozome:POPTR_0010s22390.1" /db_xref="TAIR:AT5G02950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU16" /translation="MDEAKEKGGSGSIVTESSVTVSETAVETMACEGQVQIEEGGEGG PINGDDIMVEVLGSHVYVDGICTTDGGGGGGVGGDSNDEAVCGHDEPGEVGLEGNLTS LDGEDDTAGDLGSRSDVSCGETLSAIERGKDQNEVNGAGIEGSSAPDSSAGGEACQNA EPSSRMDKGGGDANQARETQKVGDLDGNELNHENQSAVVCLSAASEDSNVQTQAVNEA PMTIDGEDLNTTDGARETISGRTKKAADVDADFNSLDVKTQVTVEDVPHCEAKDLVSS IQPTELVVEGQLDEKVSLNMEIDKQGTDSEQCQMEVNTSHQIIKNHATGNDLSLKAGT DIDRGEEVDLCMGEAVDVENQNSDAKIVGSDAEQDVKVQEDSIKVETVGIGTENHKNA CEGSELLGHQKDAFVGSDGGEVLKVNNNVSNQISTSVASDKVLHSSGNEDQLAKSSVS EDDSSVGQDLYVEEQVTGAEQDGLDQVQEMEVEEHDTDSEQPTNIDEKTVKRTVLKCA SAVKVHQAKYLLLSEEEGEFSVSGLVWGKVRSHPWWPGQIFDPSDASEKAVKYHKKDC FLVAYFGDRTFAWNEASLLKPFRTHFSQIEKQSNSESFQNAVNCALEEVSRRAELGLA CSCMPQDAYDKIKFQKVENTGVRQESSIRDGVDVSLSASSFEPDKLVDYMKALAESPA GGGDRLDLVIVKAQLLAFYRLKGYHQLPEFQSCGGLSENEANTSHSEENMYFGEEIEH TTPMDTDAEQISTGQETSMSQRSSYLKRKHNLKDGLYPSKKERSLSELMDETFDSPDV ENGTDGIANRLPSSSSGKKRKAVDSFDDSVVQEGRKTISLAKVSLTTPHFPKPSFKIG ECIRRAASQMTGSPLIPKGKLDGGSENTAADGYDVPFDNSEDAQRKRMNVTAEYSSLD ELLSQLHLAACDPMKSYSSFNIFISFFSDFRDSLVVDQLPGDKAGGKRKKSPNSIIGF PETFEFEDMNDTYWTDRIVQNGSEEHPLHGNGRGQYQIVPVELEKPLQKGRKSRKRYS DVNHDLTAEKPPGYVDERAPAELVMNFSEINSVPSETKLNKMFKHFGPLKESETEVDR ETSRARVVFRRSSDAEVAYNSAGKFNIFGSVAVNYQLNYTISESFKASLYAPTLAEET PLMASTLGGDHGLVASSLSETSLIAPSLGEEASFMVSTLGEDTLSIATTFHEESSMIA SSLGDDTLAIPTTLGDGASIIATTMYEETLPIASTTGEGTMGVATTIGDQSFMVATTV GEQFSTVVTTISEQTSTVATPMGEEDSFITTTLSKETSTITTTLGGETSMVNVSLDEE TSSMATLGEETPSILASLGEETPSIPTSLDEETPSVPTTLGEEILTIPSTLGEETPIY PVTLAEETPTITITLGQETPDLHTTLGAETPVIPSTLDKETPVIPPTLGEETPAIPPT LSDEISTITVTLGQETQTIPTIVAEETTTVLATLVEETTTIPTTLHEETLAVPTTLAE KTPTIPTTLGEETATIPTTLGKETESIPKTLGEETSTNSTTLGEETSTIPTTLAEEIP TNPITVTEETSTIPTTLGEETVAIPTTLGLEASTVLTTTGEEPSTVSTTMGMETLPPA VAEGEESAT" CDS join(3751280..3752093,3752209..3752267,3752347..3752446, 3752547..3755580,3756057..3756087) /locus_tag="TCM_043070" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG006205t1" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein isoform 3" /protein_id="EOY18530.1" /db_xref="Phytozome:POPTR_0010s22390.1" /db_xref="TAIR:AT5G02950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU16" /translation="MDEAKEKGGSGSIVTESSVTVSETAVETMACEGQVQIEEGGEGG PINGDDIMVEVLGSHVYVDGICTTDGGGGGGVGGDSNDEAVCGHDEPGEVGLEGNLTS LDGEDDTAGDLGSRSDVSCGETLSAIERGKDQNEVNGAGIEGSSAPDSSAGGEACQNA EPSSRMDKGGGDANQARETQKVGDLDGNELNHENQSAVVCLSAASEDSNVQTQAVNEA PMTIDGEDLNTTDGARETISGRTKKAADVDADFNSLDVKTQVTVEDVPHCEAKDLVSS IQPTELVVEGQLDEKVSLNMEIDKQGTDSEQCQMEVNTSHQIIKNHATGNDLSLKAGT DIDRGEEVDLCMGEAVDVENQNSDAKIVGSDAEQDVKVQEDSIKVETVGIGTENHKNA CEGSELLGHQKDAFVGSDGGEVLKVNNNVSNQISTSVASDKVLHSSGNEDQLAKSSVS EDDSSVGQDLYVEEQVTGAEQDGLDQVQEMEVEEHDTDSEQPTNIDEKTVKRTVLKCA SAVKVHQAKYLLLSEEEGEFSVSGLVWGKVRSHPWWPGQIFDPSDASEKAVKYHKKDC FLVAYFGDRTFAWNEASLLKPFRTHFSQIEKQSNSESFQNAVNCALEEVSRRAELGLA CSCMPQDAYDKIKFQKVENTGVRQESSIRDGVDVSLSASSFEPDKLVDYMKALAESPA GGGDRLDLVIVKAQLLAFYRLKGYHQLPEFQSCGGLSENEANTSHSEENMYFGEEIEH TTPMDTDAEQISTGQETSMSQRSSYLKRKHNLKDGLYPSKKERSLSELMDETFDSPDV ENGTDGIANRLPSSSSGKKRKAVDSFDDSVVQEGRKTISLAKVSLTTPHFPKPSFKIG ECIRRAASQMTGSPLIPKGKLDGGSENTAADGYDVPFDNSEDAQRKRMNVTAEYSSLD ELLSQLHLAACDPMKSYSSFNIFISFFSDFRDSLVVDQLPGDKAGGKRKKSPNSIIGF PETFEFEDMNDTYWTDRIVQNGSEEHPLHGNGRGQYQIVPVELEKPLQKGRKSRKRYS DVNHDLTAEKPPGYVDERAPAELVMNFSEINSVPSETKLNKMFKHFGPLKESETEVDR ETSRARVVFRRSSDAEVAYNSAGKFNIFGSVAVNYQLNYTISESFKASLYAPTLAEET PLMASTLGGDHGLVASSLSETSLIAPSLGEEASFMVSTLGEDTLSIATTFHEESSMIA SSLGDDTLAIPTTLGDGASIIATTMYEETLPIASTTGEGTMGVATTIGDQSFMVATTV GEQFSTVVTTISEQTSTVATPMGEEDSFITTTLSKETSTITTTLGGETSMVNVSLDEE TSSMATLGEETPSILANSNYSHNLG" gene 3756440..3757100 /locus_tag="TCM_043071" /note="dbxref CacaoGD:Thecc1EG043071" mRNA join(<3756658..3756791,3756817..3756818,3757078..3757100) /locus_tag="TCM_043071" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is weak, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc14t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc14t7; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7838t6" CDS <3756658..3756756 /locus_tag="TCM_043071" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18534.1" /translation="GRRGVKIMKLLDLYMPPLSGNGSNRSSCYSTF" gene 3757198..3766330 /locus_tag="TCM_043072" /note="dbxref CacaoGD:Thecc1EG043072" mRNA join(3757198..3758197,3760362..3760374,3761960..3761988, 3762385..3762549,3762657..3762839,3762918..3763184, 3763490..3763614,3763781..3763937,3764023..3764633, 3764747..3765434) /locus_tag="TCM_043072" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04410.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016342001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc725t5" CDS join(3757774..3758197,3760362..3760374,3761960..3761988, 3762385..3762549,3762657..3762839,3762918..3763184, 3763490..3763614,3763781..3763937,3764023..3764633, 3764747..3765346) /locus_tag="TCM_043072" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18535.1" /db_xref="Phytozome:GSVIVT01016342001" /db_xref="TAIR:AT2G38890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNK3" /translation="MQYFVMEIWRIANVKEKKIGSQQTGNQTSKGIKPCCTVQLEGEK TRQEFTLSGTITSSLATSFMAWTGSSFEWSSGYGLKTDGLGSCSKEDVGPDSQGHANQ IVKSSLNQTEDPSGHSLENQLHSDDKENLFSFQNEVDGLRGEEVSVLREFQLPEASRS RKKVDIDGFRLIEAAKDAPWKREEEKPDQFESKYDLRKSLAWDSAFFTSPGVLDPEEL FETLNFHDGDNGDSQSELKEANDLPSESLAASRIGECVVRRSLAWDSAFFTNAGVLDP EELSMVNKGYKKSETQNHILPGIEEEFWKSADSNSTIDSDYSLASLEFDLFDDMRASM HKSIKAYNLVNSSCNLQSQRGRQNPHSSKRLDTTKFQIKPLPAFRRQTVSMHGVAKIA NEATNPPRAKHATQCGEQNTSSSLKPSKTFSQANPLTAAATKRASLGANHLKMEKKIR KAASGQIMSKKPCFGDSCSVIPGLTLSPEPASSLLRIASRDFGRSECTQSTPIAKSPN SLRRKNDLAACDSSSRTPCRSLTRSKNKLLDSTHPTHLPSTLNSFTSLSSSVGCWSAE SSTSGNYVSSNSSTSVDIAFRRGVSAASQGSHTKNRSCDRPFVRNESKKTRLAYQDVN GVSKGSSPLPPAVSREIKPSGLRMPSPKIGFFDVENFSALTPNGGLKFHSGMQSTSKT RSGLHHPNGNSNRGRVGKFQPPRTSTRTSNMNERKMGSQQIGDQTSKGIKPCCSVQLE GEKACQEFTLSGTMTSSFATSFMAGTDSSCECSSGNGLKTDGLGSYSKEITGPDSQGH ANQIVKSSPNQNEAASGHPLENQLHSDDKENLFSFENEVDVLSKQIEAIDFRGDLVIE F" mRNA join(3761923..3761988,3762385..3762549,3762657..3762839, 3762918..3763184,3763490..3763614,3763781..3763937, 3764023..3764633,3764747..3765465,3766157..3766330) /locus_tag="TCM_043072" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04410.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016342001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc14t5; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc725t5; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9713t1" CDS join(3761946..3761988,3762385..3762549,3762657..3762839, 3762918..3763184,3763490..3763614,3763781..3763937, 3764023..3764633,3764747..3765346) /locus_tag="TCM_043072" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18536.1" /db_xref="Phytozome:GSVIVT01016342001" /db_xref="TAIR:AT2G38890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNK3" /translation="MSSKRSVLREFQLPEASRSRKKVDIDGFRLIEAAKDAPWKREEE KPDQFESKYDLRKSLAWDSAFFTSPGVLDPEELFETLNFHDGDNGDSQSELKEANDLP SESLAASRIGECVVRRSLAWDSAFFTNAGVLDPEELSMVNKGYKKSETQNHILPGIEE EFWKSADSNSTIDSDYSLASLEFDLFDDMRASMHKSIKAYNLVNSSCNLQSQRGRQNP HSSKRLDTTKFQIKPLPAFRRQTVSMHGVAKIANEATNPPRAKHATQCGEQNTSSSLK PSKTFSQANPLTAAATKRASLGANHLKMEKKIRKAASGQIMSKKPCFGDSCSVIPGLT LSPEPASSLLRIASRDFGRSECTQSTPIAKSPNSLRRKNDLAACDSSSRTPCRSLTRS KNKLLDSTHPTHLPSTLNSFTSLSSSVGCWSAESSTSGNYVSSNSSTSVDIAFRRGVS AASQGSHTKNRSCDRPFVRNESKKTRLAYQDVNGVSKGSSPLPPAVSREIKPSGLRMP SPKIGFFDVENFSALTPNGGLKFHSGMQSTSKTRSGLHHPNGNSNRGRVGKFQPPRTS TRTSNMNERKMGSQQIGDQTSKGIKPCCSVQLEGEKACQEFTLSGTMTSSFATSFMAG TDSSCECSSGNGLKTDGLGSYSKEITGPDSQGHANQIVKSSPNQNEAASGHPLENQLH SDDKENLFSFENEVDVLSKQIEAIDFRGDLVIEF" gene complement(3765441..3766895) /locus_tag="TCM_043073" /note="dbxref CacaoGD:Thecc1EG043073" mRNA complement(join(3765441..3765466,3766158..3766191, 3766270..3766895)) /locus_tag="TCM_043073" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.55 coverage" CDS complement(3766295..3766471) /locus_tag="TCM_043073" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18537.1" /translation="MFESLTGFNNLLSRKMAMKFFKSYSVHHSDVMDRCNIWVLNNEG NWTKLLKRWTSCRT" gene 3766375..3767341 /locus_tag="TCM_043074" /note="dbxref CacaoGD:Thecc1EG043074" mRNA join(3766375..3766890,3767317..3767341) /locus_tag="TCM_043074" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc8947t9" CDS 3766661..3766873 /locus_tag="TCM_043074" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18538.1" /translation="MNEVSRGLGLAKAMILLWHRASSDLEAALEGCNTDRWFRSKTFF HKSHKLKVWRSQEKWQRFAAREHPSA" gene complement(3767002..3773526) /locus_tag="TCM_043075" /note="dbxref CacaoGD:Thecc1EG043075" mRNA complement(join(3767002..3767409,3767740..3767820, 3768026..3768110,3768749..3768877,3769527..3769573, 3770122..3770205,3770718..3770808,3771376..3771526, 3771765..3771846,3772432..3772510,3772651..3772730, 3773188..3773526)) /locus_tag="TCM_043075" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04370.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04370.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2280t1" mRNA complement(join(3767382..3767830,3768026..3768110, 3768749..3768877,3769527..3769573,3770122..3770205, 3770718..3770808,3771376..3771526,3771765..3771846, 3772432..3772510,3772651..3772730,3773188..3773449)) /locus_tag="TCM_043075" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04370.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04370.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7621t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2280t1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc8947t17" CDS complement(join(3767401..3767409,3767740..3767820, 3768026..3768110,3768749..3768877,3769527..3769573, 3770122..3770205,3770718..3770808,3771376..3771526, 3771765..3771846,3772432..3772510,3772651..3772730, 3773188..3773235)) /locus_tag="TCM_043075" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18539.1" /db_xref="Phytozome:POPTR_0008s04370.1" /db_xref="TAIR:AT5G63220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNK0" /translation="MSGEKPKRATLPPVQENIDKLEKAINVGNFYGAQQMYKSISARY VSAQRYSEALDLLHSGACLQLKHGQVTCGAELAVLFVETLVKGKIPFDEDILDRVRKI YKMFPQIPVPSNLGDDDDVQELTEALGAAKTRVEGCSSFLRAAIKWSAEFGAPRNGDP QLHVMLAEYIYSESPELDMARVSYHFVRGNNPKKFASTLVNFMGKCYPGEDDIVIARA VLMYLSMGNLRDANYLMDELKRQVTSQELDFPQSDLVQFITFLLQTLERDALPLFNML RVNYKSSIDREPAFIELLDDIGEKFYGVRRRNPLQGMFGDLLKMM" CDS complement(join(3767810..3767830,3768026..3768110, 3768749..3768877,3769527..3769573,3770122..3770205, 3770718..3770808,3771376..3771526,3771765..3771846, 3772432..3772510,3772651..3772730,3773188..3773235)) /locus_tag="TCM_043075" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18540.1" /db_xref="Phytozome:POPTR_0008s04370.1" /db_xref="TAIR:AT5G63220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNK0" /translation="MSGEKPKRATLPPVQENIDKLEKAINVGNFYGAQQMYKSISARY VSAQRYSEALDLLHSGACLQLKHGQVTCGAELAVLFVETLVKGKIPFDEDILDRVRKI YKMFPQIPVPSNLGDDDDVQELTEALGAAKTRVEGCSSFLRAAIKWSAEFGAPRNGDP QLHVMLAEYIYSESPELDMARVSYHFVRGNNPKKFASTLVNFMGKCYPGEDDIVIARA VLMYLSMGNLRDANYLMDELKRQVTSQELDFPQSDLVQFITFLLQTLERDALPLFNML RVNYKSSIDREPAFIEGGSVAR" mRNA complement(join(<3768098..3768127,3768749..3768877, 3769527..3769573,3770122..3770205,3770718..3770808, 3771376..3771526,3771765..3771846,3772432..3772510, 3772651..3772730,3773188..3773449)) /locus_tag="TCM_043075" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04370.1" /inference="similar to AA sequence:ricco:29923.m000803" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7621t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2280t1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc8947t17" CDS complement(join(<3768100..3768127,3768749..3768877, 3769527..3769573,3770122..3770205,3770718..3770808, 3771376..3771526,3771765..3771846,3772432..3772510, 3772651..3772730,3773188..3773235)) /locus_tag="TCM_043075" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29923.m000803" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY18541.1" /db_xref="TAIR:AT5G63220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNK0" /translation="MSGEKPKRATLPPVQENIDKLEKAINVGNFYGAQQMYKSISARY VSAQRYSEALDLLHSGACLQLKHGQVTCGAELAVLFVETLVKGKIPFDEDILDRVRKI YKMFPQIPVPSNLGDDDDVQELTEALGAAKTRVEGCSSFLRAAIKWSAEFGAPRNGDP QLHVMLAEYIYSESPELDMARVSYHFVRGNNPKKFASTLVNFMGKCYPGEDDIVIARA VLMYLSMGNLRDANYLMDELKRQVTSQELDFPQSDLVQFITFLLQTHFDAAGWKE" gene 3773463..3775259 /locus_tag="TCM_043076" /note="dbxref CacaoGD:Thecc1EG043076" mRNA join(3773463..3773474,3773700..3773939,3774594..3774996, 3775134..3775259) /locus_tag="TCM_043076" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene23230" /inference="similar to AA sequence:ricco:29923.m000805" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8591t2_C1" CDS join(3773718..3773939,3774594..3774707) /locus_tag="TCM_043076" /note="dbxref ricco:29923.m000805" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18542.1" /db_xref="TAIR:AT5G51960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLY5" /translation="MSSQQALAAVKVYRDLLKAVKKHIGNEDYKKHFREYVTQEFRKN CQLSDPSLVTQKIKLANDYTFLLNSVHHHKDLLFSYNIAVDRSDEMKRILGKSAASVG LQLPEVYQP" mobile_element complement(3775918..3776822) /note="source:CACAO_M_E49279_F74_scaffold_6 1004 1933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3777523..3777607) /note="source:scaffold_4_CACTA_0511 7090 7178" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3778375..3778452 /note="source:scaffold_8_CACTA_0855 3178 3260" /mobile_element_type="transposon:TIR/CACTA" gene 3780496..3782041 /locus_tag="TCM_043077" /note="dbxref CacaoGD:Thecc1EG043077" mRNA join(3780496..3780643,3781218..3781373,3781466..3781596, 3781807..>3781863) /locus_tag="TCM_043077" /product="Ribosomal protein S12/S23 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g20010.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022089t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025626001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc495t15; inference alignment:Newbler:10:TSA:cgbaB_g15107t00001" mRNA join(3780543..3780643,3781218..3781373,3781466..3781592, 3781801..3782041) /locus_tag="TCM_043077" /product="Ribosomal protein S12/S23 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g20010.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022089t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025626001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15107t00001" CDS join(3780639..3780643,3781218..3781373,3781466..3781592, 3781801..3781941) /locus_tag="TCM_043077" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022089t1" /codon_start=1 /product="Ribosomal protein S12/S23 family protein isoform 1" /protein_id="EOY18543.1" /db_xref="Phytozome:GSVIVT01025626001" /db_xref="TAIR:AT5G02960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62266" /translation="MGKTRGMGAGRKLRTHRRRQRWADKAYKKSNLGNEWKKPFAGSS HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIA GFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS" CDS join(3780639..3780643,3781218..3781373,3781466..3781596, 3781807..>3781862) /locus_tag="TCM_043077" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022089t1" /codon_start=1 /product="Ribosomal protein S12/S23 family protein isoform 2" /protein_id="EOY18544.1" /db_xref="Phytozome:GSVIVT01025626001" /db_xref="TAIR:AT5G02960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0IY94" /translation="MGKTRGMGAGRKLRTHRRRQRWADKAYKKSNLGNEWKKPFAGSS HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENVSFDCR IWTKRACCGGYSRS" gene complement(3783104..3786086) /locus_tag="TCM_043078" /note="dbxref CacaoGD:Thecc1EG043078" mRNA complement(join(3783104..3783463,3784638..3784980, 3785761..3786086)) /locus_tag="TCM_043078" /product="Ureidoglycolate hydrolases" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016337001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043079t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016337001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4190t1" CDS complement(join(3783398..3783463,3784638..3784980, 3785761..3785930)) /locus_tag="TCM_043078" /note="paralog of Thecc1EG043079t1" /codon_start=1 /product="Ureidoglycolate hydrolases" /protein_id="EOY18545.1" /db_xref="Phytozome:GSVIVT01016337001" /db_xref="TAIR:AT2G35820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0PD15" /translation="METTKPKESEPALMKLKPIEATQESFKEYGQVIEASPDGDEFGP KDAQLDLSKGIPRFYIMHLQDRPLEFSKITHHASVTQCLGSIGGHVWYLGIAKPSIMD SEEIRSDNGKILIQSHCGHRYVPPAVDDVCVFRISGPKFLKLNRGTWHAGPLFKADTM DFYNLELSDTNVVDHTTHDFIKENGVLFSIDE" gene complement(3786346..3789045) /locus_tag="TCM_043079" /note="dbxref CacaoGD:Thecc1EG043079" mRNA complement(join(3786346..3786900,3787547..3787889, 3788783..3789045)) /locus_tag="TCM_043079" /product="Ureidoglycolate hydrolases" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22450.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043078t1" /inference="similar to AA sequence:Phytozome:Glyma10g35820.2" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc202t2" CDS complement(join(3786835..3786900,3787547..3787889, 3788783..3788955)) /locus_tag="TCM_043079" /note="paralog of Thecc1EG043078t1" /codon_start=1 /product="Ureidoglycolate hydrolases" /protein_id="EOY18546.1" /db_xref="Phytozome:Glyma10g35820.2" /db_xref="TAIR:AT2G35820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0PD15" /translation="MEMQERPDESKPMVVKLKAIEVTPESFQEYGQVIEASPDGEEFG PKDAQLDLSKGIPRFHIMRLEDQPLKFATITHHASVTQCLGSIGGHVWYLGVAKPSIV DSKEIKNENSKANLQSRCGHFYLPPAVDDVQVFRISGPKFLKLNVGTWHAGPLFTEHS MDFYNLELSNTNEVDHTTHSFRKKDMVVFAIDD" gene 3789215..3793931 /locus_tag="TCM_043080" /note="dbxref CacaoGD:Thecc1EG043080" mRNA join(3789215..3791817,3792810..3793931) /locus_tag="TCM_043080" /product="Pentatricopeptide repeat superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene23227" /inference="similar to AA sequence:ricco:29923.m000800" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2254t1" CDS 3789232..3791517 /locus_tag="TCM_043080" /note="dbxref ricco:29923.m000800" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative" /protein_id="EOY18547.1" /db_xref="TAIR:AT2G16880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AMQ4" /translation="MSKAESEVLKTLIKILTSSKNPIDALTPYTPLLTPTLLQSLVSS PFLSSHPSTLLSLHKLSLSLFPSLSSSPSFLLSLLPPLISRHKFSECKSLLLSFLSSD PQNTLFTSLVHHPSLSKPLLEISVSSYVQSGKPHLGLELFNLMKRLQKKPNLLTCNNL INGLVKFPSLHSIQLGKQVFHDSITLGVIPETSTFNILILGCCLEGKFNEAISFIEKM KDFGCFPDNVTYNTILAYLCKKGMLKEARDLLQDMKEKGLIPNRKTYNILVSGYCRIG WLKEASKIIDLMVQNDVLPDVWTYNMLINGLCGEGRIEEAVKLRDEMENLKVLPDVVT YNTLINGYFEWGCSEEGFRLVEEMKEKGVEPIAVTHNILVKWYCKEGKMDEASERVRV MEESGLSPDKVTYNTLINGYCKAGKLAEAFRMMGVMLRKGFKMDTITLNTLLHTLCEE RTLKKASELLISASKRGYLIDEVSYGTLIAGYFKVGNEDKALKLWNEMKEKEIIPSIV TYNTVIGGLCQLGKTEEAIGKLNELLESGLVPAETTYNTIIHGYFREGKVEKAFEFYN KMAENSFKPDVFTCNILLSGLCREGMLEKALKLFDAWISKGKAIDGVTYNTMISSLCK EGRYEAANHLVSEMKERNLGPDNYTYKAILDALTSAGRMKELEEVISKVVEVGKVHEQ SLELKEQNVKTSEILKESDPDSNACSVQIIELCNQGRYKDAMRIYRVANEKGVALNKS TYIALMEGLIKRRKSTTKAVQ" mobile_element 3795698..3795801 /note="source:scaffold_4_CACTA_0511 5715 5813" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3795817..3795910 /note="source:scaffold_3_CACTA_0396 889 983" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3797442..3797517 /note="source:scaffold_3_CACTA_0396 893 964" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3800245..3800290 /note="source:CACAO_Mariner_E36_scaffold_2 1162 1208" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 3801060..3801105 /note="source:scaffold_2_CACTA_0245 3546 3590" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3802701..3802736) /note="source:scaffold_10_CACTA_0127 10333 10368" /mobile_element_type="transposon:TIR/CACTA" gene 3805485..3807367 /locus_tag="TCM_043081" /note="dbxref CacaoGD:Thecc1EG043081" mRNA join(3805485..3805923,3806559..3807367) /locus_tag="TCM_043081" /product="LOB domain-containing protein 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041094t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04350.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14519t00001" CDS join(3805585..3805923,3806559..3806882) /locus_tag="TCM_043081" /note="paralog of Thecc1EG041094t1" /codon_start=1 /product="LOB domain-containing protein 1" /protein_id="EOY18548.1" /db_xref="Phytozome:POPTR_0008s04350.1" /db_xref="TAIR:AT1G07900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SK08" /translation="MENNDKAAISPISVSTPFSYSPSSSSSPPTPHYSPGFPSPNSQS NSPKNSHQPPPPPASPPPVVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRV FGASNIIKSLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSDLQAQL AKTQAELVTMQCQQANLLALICMEMTQSKEPTSQQQPYSIDTSCFLDDSNLASAWEPL WT" gene 3815346..3818245 /locus_tag="TCM_043082" /note="dbxref CacaoGD:Thecc1EG043082" mRNA join(3815346..3815580,3816540..3816621,3817612..3817676, 3817773..3817859,3817947..3818245) /locus_tag="TCM_043082" /product="ATP synthase D chain, mitochondrial" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016324001" /inference="similar to AA sequence:ricco:29740.m000476" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4201t1" CDS join(3815410..3815580,3816540..3816621,3817612..3817676, 3817773..3817859,3817947..3818048) /locus_tag="TCM_043082" /note="dbxref ricco:29740.m000476" /codon_start=1 /product="ATP synthase D chain, mitochondrial" /protein_id="EOY18549.1" /db_xref="TAIR:AT3G52300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FT52" /translation="MSGAGKKVVDVAFKASKNIDWEGMAKLLVSDEARKEFATLRRAF DEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKEAYDSVEIPKFVDTVTPQYKPK FDALLIELKEAEEKSLKESVRLEKEIAEVQELKKKISTMTADEYFEKHPELKKKFDDE IRNDYWGY" gene complement(3818443..3826958) /locus_tag="TCM_043083" /note="dbxref CacaoGD:Thecc1EG043083" mRNA complement(join(3818443..3819262,3820166..3820399, 3821113..3821191,3821294..3821409,3822286..3822430, 3822836..3823256,3823732..3825461,3826728..3826958)) /locus_tag="TCM_043083" /product="Mitochondrial substrate carrier family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23221" /inference="similar to AA sequence:Phytozome:GSVIVT01016323001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2306t2" mRNA complement(join(3818522..3819262,3820166..3820399, 3821113..3821409,3822286..3822430,3822836..3823256, 3823732..3825353)) /locus_tag="TCM_043083" /product="Mitochondrial substrate carrier family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene23221" /inference="similar to AA sequence:Phytozome:GSVIVT01016323001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc8964t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2306t2" mRNA complement(join(3818522..3819253,3820166..3820399, 3821113..3821191,3821294..3821409,3822286..3822430, 3822836..3823256,3823732..3825325)) /locus_tag="TCM_043083" /product="Mitochondrial substrate carrier family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene23221" /inference="similar to AA sequence:Phytozome:GSVIVT01016323001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7611t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2306t2" CDS complement(join(3818912..3819253,3820166..3820399, 3821113..3821191,3821294..3821409,3822286..3822430, 3822836..3823256,3823732..3824914)) /locus_tag="TCM_043083" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 2" /protein_id="EOY18551.1" /db_xref="Phytozome:GSVIVT01016323001" /db_xref="TAIR:AT2G35800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLY0" /translation="MVSTNDPIESISNSIQFIKEAFLPLEFGIKKAAKDLESCWGVSN DKGNNVELIAQLNGSDRNGKVQMFGVKRSSGSFGGSGVNNGQCCVGGEERKKGLSIKV PIKAFMGMFLPANEQNNEKVKMVRKGLKDKDVDRDEGSCMNCLQFAMTWSVLVNSFVQ AIPSLFKSGRKQIQKMGDKDEVCLNSYSHDMKLKSSFEFERKESRAQFVAENEGLEHN DGKRVSFECLIGFIFDQLTQNLQKFDQLLQESNQKHCDCPSAPSPPAHFDHLKAVTSL WEGRKADVNGFLGNLKFARVGGVPSGIVGVASSVNEEGDDGVTTGSREEAGGNSPQKL ASGILSIPLSNVERLRSTLSTVSLTELIELLPPLGRSSQDHPDKKKLFSVQDFFRYTE SEGRRFFEELDRDGDGQVTLEDLEVAMRKRKLPRRYAREFMRRTRSNLFSKSFGWKQF LSLMEQKEPTILRAYTSLCLSKSGTLKKSEILASLKNAGLPANEDNAVAMMRFLNADT EESISYGHFRNFMLLLPSDRLLQDDPRNIWFEAATVVAVAPPVEIPAGSVLKSALAGG LSCALSTSLMHPVDTIKTRVQASTLTFPEIISKLPQIGVRGLYRGSVPAILGQFSSHG LRTGIFEASKLVLINVAPNLPDIQVQSMASFCSTLLGTAVRIPCEVLKQRLQAGLFDN VGQALVGTWQQDGLKGFFRGTGATLCREVPFYVAGMGLYAESKKQLLRRELEPWETIA VGALSGGLAAVVTTPFDVMKTRMMTAPGGRPISMSLVAFSILRHEGPLGLFKGAVPRF FWIAPLGAMNFAGYELARKAMDKNEDAATDQLSQKKLANSG" CDS complement(join(3818912..3819262,3820166..3820399, 3821113..3821191,3821294..3821409,3822286..3822430, 3822836..3823256,3823732..3824914)) /locus_tag="TCM_043083" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 1" /protein_id="EOY18550.1" /db_xref="Phytozome:GSVIVT01016323001" /db_xref="TAIR:AT2G35800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLY0" /translation="MVSTNDPIESISNSIQFIKEAFLPLEFGIKKAAKDLESCWGVSN DKGNNVELIAQLNGSDRNGKVQMFGVKRSSGSFGGSGVNNGQCCVGGEERKKGLSIKV PIKAFMGMFLPANEQNNEKVKMVRKGLKDKDVDRDEGSCMNCLQFAMTWSVLVNSFVQ AIPSLFKSGRKQIQKMGDKDEVCLNSYSHDMKLKSSFEFERKESRAQFVAENEGLEHN DGKRVSFECLIGFIFDQLTQNLQKFDQLLQESNQKHCDCPSAPSPPAHFDHLKAVTSL WEGRKADVNGFLGNLKFARVGGVPSGIVGVASSVNEEGDDGVTTGSREEAGGNSPQKL ASGILSIPLSNVERLRSTLSTVSLTELIELLPPLGRSSQDHPDKKKLFSVQDFFRYTE SEGRRFFEELDRDGDGQVTLEDLEVAMRKRKLPRRYAREFMRRTRSNLFSKSFGWKQF LSLMEQKEPTILRAYTSLCLSKSGTLKKSEILASLKNAGLPANEDNAVAMMRFLNADT EESISYGHFRNFMLLLPSDRLLQDDPRNIWFEAATVVAVAPPVEIPAGSVLKSALAGG LSCALSTSLMHPVDTIKTRVQASTLTFPEIISKLPQIGVRGLYRGSVPAILGQFSSHG LRTGIFEASKLVLINVAPNLPDIQVQSMASFCSTLLGTAVRIPCEVLKQRLQAGLFDN VGQALVGTWQQDGLKGFFRGTGATLCREVPFYVAGMGLYAESKKLAQQLLRRELEPWE TIAVGALSGGLAAVVTTPFDVMKTRMMTAPGGRPISMSLVAFSILRHEGPLGLFKGAV PRFFWIAPLGAMNFAGYELARKAMDKNEDAATDQLSQKKLANSG" CDS complement(join(3818912..3819262,3820166..3820399, 3821113..3821409,3822286..3822430,3822836..3823256, 3823732..3824914)) /locus_tag="TCM_043083" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 3" /protein_id="EOY18552.1" /db_xref="Phytozome:GSVIVT01016323001" /db_xref="TAIR:AT2G35800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLY0" /translation="MVSTNDPIESISNSIQFIKEAFLPLEFGIKKAAKDLESCWGVSN DKGNNVELIAQLNGSDRNGKVQMFGVKRSSGSFGGSGVNNGQCCVGGEERKKGLSIKV PIKAFMGMFLPANEQNNEKVKMVRKGLKDKDVDRDEGSCMNCLQFAMTWSVLVNSFVQ AIPSLFKSGRKQIQKMGDKDEVCLNSYSHDMKLKSSFEFERKESRAQFVAENEGLEHN DGKRVSFECLIGFIFDQLTQNLQKFDQLLQESNQKHCDCPSAPSPPAHFDHLKAVTSL WEGRKADVNGFLGNLKFARVGGVPSGIVGVASSVNEEGDDGVTTGSREEAGGNSPQKL ASGILSIPLSNVERLRSTLSTVSLTELIELLPPLGRSSQDHPDKKKLFSVQDFFRYTE SEGRRFFEELDRDGDGQVTLEDLEVAMRKRKLPRRYAREFMRRTRSNLFSKSFGWKQF LSLMEQKEPTILRAYTSLCLSKSGTLKKSEILASLKNAGLPANEDNAVAMMRFLNADT EESISYGHFRNFMLLLPSDRLLQDDPRNIWFEAATVVAVAPPVEIPAGSVLKSALAGG LSCALSTSLMHPVDTIKTRVQASTLTFPEIISKLPQIGVRGLYRGSVPAILGQFSRFC IVFIVYYSFFHSDFDFTFVIYPSVWFYFNNCSHGLRTGIFEASKLVLINVAPNLPDIQ VQSMASFCSTLLGTAVRIPCEVLKQRLQAGLFDNVGQALVGTWQQDGLKGFFRGTGAT LCREVPFYVAGMGLYAESKKLAQQLLRRELEPWETIAVGALSGGLAAVVTTPFDVMKT RMMTAPGGRPISMSLVAFSILRHEGPLGLFKGAVPRFFWIAPLGAMNFAGYELARKAM DKNEDAATDQLSQKKLANSG" gene complement(3827117..3830578) /locus_tag="TCM_043084" /note="dbxref CacaoGD:Thecc1EG043084" mRNA complement(join(3827117..3827879,3828834..3828854, 3828943..3829132,3829324..3829394,3829472..3829608, 3830345..3830578)) /locus_tag="TCM_043084" /product="Chaperone DnaJ-domain superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g16850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022096t1" /inference="similar to AA sequence:frave:gene23220" /note="transcript variant 1; alternatively spliced; quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08257t00001" mRNA complement(join(3827411..3827879,3828943..3829121, 3830345..3830501)) /locus_tag="TCM_043084" /product="Chaperone DnaJ-domain superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g16850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022096t1" /inference="similar to AA sequence:frave:gene23220" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08257t00001; inference alignment:Newbler:10:TSA:cgbaP1_g08257t00001" CDS complement(join(3827723..3827879,3828943..3829121, 3830345..3830347)) /locus_tag="TCM_043084" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene23220; paralog of Thecc1EG022096t1" /codon_start=1 /product="Chaperone DnaJ-domain superfamily protein isoform 2" /protein_id="EOY18554.1" /db_xref="TAIR:AT2G35795.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9T313" /translation="MATPFFAGLAVAAAALAGRYGIHAWQAFKARQPTPRIRKFYEGG FQPTMTRREAALILGVRENATPDKVKEAHKKVMVANHPDAGGSHYLASKINEAKDVML GKTKGSGSAF" CDS complement(join(3827723..3827879,3828834..3828854, 3828943..3829132,3829324..3829394,3829472..3829488)) /locus_tag="TCM_043084" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene23220; paralog of Thecc1EG022096t1" /codon_start=1 /product="Chaperone DnaJ-domain superfamily protein isoform 1" /protein_id="EOY18553.1" /db_xref="TAIR:AT2G35795.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9T313" /translation="MLGVERVPLSLDQSLQSMHQHICGTLENRYVHQATPFFAGLAVA AAALAGRYGIHAWQAFKARQPTPRIRKFYEGGFQPTMTRREAALILGVRFLSIHDREN ATPDKVKEAHKKVMVANHPDAGGSHYLASKINEAKDVMLGKTKGSGSAF" gene complement(3830929..3836606) /locus_tag="TCM_043085" /note="dbxref CacaoGD:Thecc1EG043085" mRNA complement(join(3830929..3832314,3832482..3832601, 3832959..3833186,3833918..3834235,3834320..3834388, 3834601..3834625,3834758..3834843,3835560..3835618, 3836358..3836606)) /locus_tag="TCM_043085" /product="IQ-domain 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g31810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022097t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05451t00001" mRNA complement(join(3831121..3832314,3832482..3832601, 3832959..3833186,3833918..3834235,3834320..3834403, 3834758..3834982)) /locus_tag="TCM_043085" /product="IQ-domain 3 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g31810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022097t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22510.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc277t10; alternateUTRof:Thecc1EG043085t3; inference alignment:Newbler:10:TSA:cgbaB_g05451t00001" mRNA complement(join(3831121..3832314,3832959..3833186, 3833918..3834235,3834320..3834400,3834570..3834648, 3834758..3834786)) /locus_tag="TCM_043085" /product="IQ-domain 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g31810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022097t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22510.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7958t4; inference alignment:Newbler:10:TSA:cgbaB_g05451t00001" mRNA complement(join(3831121..3832314,3832482..3832601, 3832959..3833186,3833918..3834235,3834320..3834400, 3834570..3834786)) /locus_tag="TCM_043085" /product="IQ-domain 3 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g31810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022097t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22510.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7958t5; inference alignment:Newbler:10:TSA:cgbaB_g05451t00001" mRNA complement(join(3831149..3832314,3832482..3832601, 3832959..3833186,3833918..3834403,3834758..3834793)) /locus_tag="TCM_043085" /product="IQ-domain 3 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g31810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022097t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22510.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06751t00001; inference alignment:Newbler:10:TSA:cgbaB_g05451t00001" CDS complement(join(3831592..3832314,3832482..3832601, 3832959..3833186,3833918..3834235,3834320..3834388, 3834601..3834625,3834758..3834843,3835560..3835618, 3836358..3836400)) /locus_tag="TCM_043085" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022097t1" /codon_start=1 /product="IQ-domain 3 isoform 1" /protein_id="EOY18555.1" /db_xref="Phytozome:POPTR_0010s22510.1" /db_xref="TAIR:AT3G52290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUP0" /translation="MLTLLVFSTFTSMEQTKPEKDRKKIKRKKGWERVERKKERERER IKEKVPIFEQRSGNFPMHRSFIFGIWVMGKKGGWFSAVKKVLSPESKKDQRTPKSKKK WFGKSKDLGPVPLPEETEVTAPPLPPPTEDVKLAEAENEQSKHAYSVALATAMAAEAA VAAAQAAAEVVRLTSVPRYPGKSKEEIAAIKIQTAFRGYLARRALRALRGLVRLKSLI QGQSVKRQATSTLRCMQTLARVQSQIRARRIRMLEENQALQRQLQQKCEKELEKLRAS MGEDWNDSTQSKEQIDARQQNKQEAAMRRERALAYAFSHQQSWKNSSKSVNPTFMDPN NPHWGWSWLERWMAARPWENRSTTDNHDRGSVKSMGARSMSIGEISRAYSRRDLNNDN KPSPTPPKSSRPPSRQSPSTPPSKAPSISSVSSKIKLPSPRGSQWGGDEDSRSMLSVQ SERYRRHSIAGSSVRDDESLASSPAVPSYMAPTQSTKARSRLPSPLGLEKNGTPDRGS AGSAKKRLSFSPSPAGNRRHSGPPKVDITPVKDIKMHKEEKLSNGGGR" CDS complement(join(3831592..3832314,3832959..3833186, 3833918..3834235,3834320..3834388)) /locus_tag="TCM_043085" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022097t1" /codon_start=1 /product="IQ-domain 3 isoform 2" /protein_id="EOY18556.1" /db_xref="Phytozome:POPTR_0010s22510.1" /db_xref="TAIR:AT3G52290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUP0" /translation="MGKKGGWFSAVKKVLSPESKKDQRTPKSKKKWFGKSKDLGPVPL PEETEVTAPPLPPPTEDVKLAEAENEQSKHAYSVALATAMAAEAAVAAAQAAAEVVRL TSVPRYPGKSKEEIAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATSTL RCMQTLARVQSQIRARRIRMLEENQALQRQLQQKCEKELEKLRASQSWKNSSKSVNPT FMDPNNPHWGWSWLERWMAARPWENRSTTDNHDRGSVKSMGARSMSIGEISRAYSRRD LNNDNKPSPTPPKSSRPPSRQSPSTPPSKAPSISSVSSKIKLPSPRGSQWGGDEDSRS MLSVQSERYRRHSIAGSSVRDDESLASSPAVPSYMAPTQSTKARSRLPSPLGLEKNGT PDRGSAGSAKKRLSFSPSPAGNRRHSGPPKVDITPVKDIKMHKEEKLSNGGGR" CDS complement(join(3831592..3832314,3832482..3832601, 3832959..3833186,3833918..3834235,3834320..3834388)) /locus_tag="TCM_043085" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022097t1" /codon_start=1 /product="IQ-domain 3 isoform 3" /protein_id="EOY18557.1" /db_xref="Phytozome:POPTR_0010s22510.1" /db_xref="TAIR:AT3G52290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUP0" /translation="MGKKGGWFSAVKKVLSPESKKDQRTPKSKKKWFGKSKDLGPVPL PEETEVTAPPLPPPTEDVKLAEAENEQSKHAYSVALATAMAAEAAVAAAQAAAEVVRL TSVPRYPGKSKEEIAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATSTL RCMQTLARVQSQIRARRIRMLEENQALQRQLQQKCEKELEKLRASMGEDWNDSTQSKE QIDARQQNKQEAAMRRERALAYAFSHQQSWKNSSKSVNPTFMDPNNPHWGWSWLERWM AARPWENRSTTDNHDRGSVKSMGARSMSIGEISRAYSRRDLNNDNKPSPTPPKSSRPP SRQSPSTPPSKAPSISSVSSKIKLPSPRGSQWGGDEDSRSMLSVQSERYRRHSIAGSS VRDDESLASSPAVPSYMAPTQSTKARSRLPSPLGLEKNGTPDRGSAGSAKKRLSFSPS PAGNRRHSGPPKVDITPVKDIKMHKEEKLSNGGGR" CDS complement(join(3831592..3832314,3832482..3832601, 3832959..3833186,3833918..3834235,3834320..3834388)) /locus_tag="TCM_043085" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG022097t1" /codon_start=1 /product="IQ-domain 3 isoform 3" /protein_id="EOY18558.1" /db_xref="Phytozome:POPTR_0010s22510.1" /db_xref="TAIR:AT3G52290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUP0" /translation="MGKKGGWFSAVKKVLSPESKKDQRTPKSKKKWFGKSKDLGPVPL PEETEVTAPPLPPPTEDVKLAEAENEQSKHAYSVALATAMAAEAAVAAAQAAAEVVRL TSVPRYPGKSKEEIAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATSTL RCMQTLARVQSQIRARRIRMLEENQALQRQLQQKCEKELEKLRASMGEDWNDSTQSKE QIDARQQNKQEAAMRRERALAYAFSHQQSWKNSSKSVNPTFMDPNNPHWGWSWLERWM AARPWENRSTTDNHDRGSVKSMGARSMSIGEISRAYSRRDLNNDNKPSPTPPKSSRPP SRQSPSTPPSKAPSISSVSSKIKLPSPRGSQWGGDEDSRSMLSVQSERYRRHSIAGSS VRDDESLASSPAVPSYMAPTQSTKARSRLPSPLGLEKNGTPDRGSAGSAKKRLSFSPS PAGNRRHSGPPKVDITPVKDIKMHKEEKLSNGGGR" CDS complement(join(3831592..3832314,3832482..3832601, 3832959..3833186,3833918..3834055)) /locus_tag="TCM_043085" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG022097t1" /codon_start=1 /product="IQ-domain 3 isoform 5" /protein_id="EOY18559.1" /db_xref="Phytozome:POPTR_0010s22510.1" /db_xref="TAIR:AT5G03040.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUP0" /translation="MAAEAAVAAAQAAAEVVRLTSVPRYPGKSKEEIAAIKIQTAFRG YLARRALRALRGLVRLKSLIQGQSVKRQATSTLRCMQTLARVQSQIRARRIRMLEENQ ALQRQLQQKCEKELEKLRASMGEDWNDSTQSKEQIDARQQNKQEAAMRRERALAYAFS HQQSWKNSSKSVNPTFMDPNNPHWGWSWLERWMAARPWENRSTTDNHDRGSVKSMGAR SMSIGEISRAYSRRDLNNDNKPSPTPPKSSRPPSRQSPSTPPSKAPSISSVSSKIKLP SPRGSQWGGDEDSRSMLSVQSERYRRHSIAGSSVRDDESLASSPAVPSYMAPTQSTKA RSRLPSPLGLEKNGTPDRGSAGSAKKRLSFSPSPAGNRRHSGPPKVDITPVKDIKMHK EEKLSNGGGR" gene complement(3836770..3842118) /locus_tag="TCM_043086" /note="dbxref CacaoGD:Thecc1EG043086" mRNA complement(join(3836770..3837207,3837299..3837382, 3837476..3837514,3837617..3838061,3838396..3838669, 3840016..3840185,3840426..3840566,3840831..3840912, 3841020..3841196,3841935..3842118)) /locus_tag="TCM_043086" /product="Arginine-rich cyclin 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01020870001" /inference="similar to AA sequence:Phytozome:GSVIVT01020870001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc149t1" CDS complement(join(3837312..3837382,3837476..3837514, 3837617..3838061,3838396..3838669,3840016..3840185, 3840426..3840566,3840831..3840912,3841020..3841171)) /locus_tag="TCM_043086" /codon_start=1 /product="Arginine-rich cyclin 1" /protein_id="EOY18560.1" /db_xref="Phytozome:GSVIVT01020870001" /db_xref="TAIR:AT2G26430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWV3" /translation="MIYTAIDNFYLTDEQLKNSPSRKDGIDEATETTLRIYGCDLIQE SGILLKLPQAVMATGQVLFHRFYCKKSFARFDVKIVAASALWLATKLEESPRRARQVI IVFHRMECRRENLPLEHLDLYSKKFSDLKAELSRTERHILKEMGFVCHVEHPHKFISN YLATLETPTELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQVPLPENLPW WKAFDAEKSGIDEVCRVLAHLYSLPKAQYSPVCKDRKPFTFSTKSADSQSQLISKEVP LSPPANNNANVSNTTVAAADLETGGSKEAKVKMALDKLKESKQSDDESKSMPTEGDAR EEPRHKSKSEQRTQSGGEKSKERDRERERERERERERDRERDRERAKARDRDRGRDSD RERERDETERDRDKVKDRGHRSKDRTKDSGGHSEKSRHHSSRDRDYRGSSYSSREKDR HRHHSYA" mobile_element 3842401..3842568 /note="source:scaffold_9_CACTA_0946 4067 4249" /mobile_element_type="transposon:TIR/CACTA" gene complement(3843185..3845875) /locus_tag="TCM_043087" /note="dbxref CacaoGD:Thecc1EG043087" mRNA complement(join(3843185..3844616,3844723..3845206, 3845819..3845875)) /locus_tag="TCM_043087" /product="GTP binding Elongation factor Tu family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29938.m000598.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043092t2" /inference="similar to AA sequence:ricco:29938.m000598" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00794t00002" mRNA complement(join(3843185..3844616,3844723..3845206, 3845790..3845875)) /locus_tag="TCM_043087" /product="GTP binding Elongation factor Tu family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29938.m000598.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043092t2" /inference="similar to AA sequence:ricco:29938.m000598" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b041597t1a2; alternateUTRof:Thecc1EG043087t1; inference alignment:Newbler:10:TSA:cgbaP2_g00794t00002" CDS complement(join(3843729..3844616,3844723..3845184)) /locus_tag="TCM_043087" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29938.m000598; paralog of Thecc1EG043092t2" /codon_start=1 /product="GTP binding Elongation factor Tu family protein isoform 1" /protein_id="EOY18561.1" /db_xref="TAIR:AT5G60390.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A8WGK7" /translation="MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEK EAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNM ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLE ALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVII MNHPGQIGNGYAPVLDCHTCHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKM VPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSGAKVTKSAAKKGGK" CDS complement(join(3843729..3844616,3844723..3845184)) /locus_tag="TCM_043087" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29938.m000598; paralog of Thecc1EG043092t2" /codon_start=1 /product="GTP binding Elongation factor Tu family protein isoform 1" /protein_id="EOY18562.1" /db_xref="TAIR:AT5G60390.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A8WGK7" /translation="MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEK EAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNM ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLE ALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVII MNHPGQIGNGYAPVLDCHTCHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKM VPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSGAKVTKSAAKKGGK" gene 3846180..3853162 /locus_tag="TCM_043089" /note="dbxref CacaoGD:Thecc1EG043089" mRNA join(3846180..3846353,3846450..3846582,3846700..3846760, 3847240..3847345,3847435..3847486,3847571..3847677, 3848771..3848839,3849447..3849977,3850354..3850656, 3850829..3851152,3851251..3851457,3851796..3851885, 3851974..3852071,3852274..3853162) /locus_tag="TCM_043089" /product="Nucleolar complex protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016319001" /inference="similar to AA sequence:Phytozome:GSVIVT01016319001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc254t4" mRNA join(3846199..3846353,3846450..3846582,3846700..3846760, 3847240..3847345,3847435..3847486,3847571..3847677, 3848771..3848839,3849447..3849977,3850354..3850656, 3850829..3851152,3851251..3851457,3851796..3851885, 3851974..3852071,3852274..3852466,3852567..3853119) /locus_tag="TCM_043089" /product="Nucleolar complex protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016319001" /inference="similar to AA sequence:Phytozome:GSVIVT01016319001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc254t6; alternateUTRof:Thecc1EG043089t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc254t4; inference alignment:Newbler:10:TSA:cgbaL_g13906t00001" mRNA join(3846199..3846353,3846450..3846582,3846700..3846760, 3847240..3847354,3847434..3847486,3847571..3847677, 3848771..3848839,3849447..3849977,3850354..3850656, 3850829..3851152,3851251..3851457,3851796..3851885, 3851974..3852071,3852274..3852472,3852567..3852592) /locus_tag="TCM_043089" /product="Nucleolar complex protein 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016319001" /inference="similar to AA sequence:Phytozome:GSVIVT01016319001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc254t3; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc254t4; inference alignment:Newbler:10:TSA:cgbaL_g13906t00001" mRNA join(3846325..3846353,3846450..3846573,3846700..3846760, 3847240..3847345,3847435..3847486,3847571..3847677, 3848771..3848839,3849447..3849977,3850354..3850656, 3850829..3851152,3851251..3851457,3851796..3851885, 3851974..3852071,3852274..3852466,3852567..3853109) /locus_tag="TCM_043089" /product="Nucleolar complex protein 2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016319001" /inference="similar to AA sequence:Phytozome:GSVIVT01016319001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc254t5; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc254t4; inference alignment:Newbler:10:TSA:cgbaL_g13906t00001" CDS join(3846474..3846582,3846700..3846760,3847240..3847345, 3847435..3847486,3847571..3847677,3848771..3848839, 3849447..3849977,3850354..3850656,3850829..3851152, 3851251..3851457,3851796..3851885,3851974..3852071, 3852274..3852430) /locus_tag="TCM_043089" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nucleolar complex protein 2 isoform 1" /protein_id="EOY18563.1" /db_xref="Phytozome:GSVIVT01016319001" /db_xref="TAIR:AT3G55510.1" /translation="MGKLGKKARKFAKKNLQSVLKRKRKLKSMFKKKGSKRDEQDEAE NLQEEQISKSNGRDLESENIEDAALDAVFSDESDVVEDDSESDGYLSEDSGCAYLDGN GSESNQDDMNVDNIGASELSVQNREILLELAGKRKKLKRLEKKDPEFSKFLESYENGL EKLRDEENFSDEDNTSDDGTQNPSKGSAILSKDKLLTSSALNTLCQLVREQRSISALT SLLNGYRAACHCGTEPSGLLDVDSCCGLQDSKTFSKILIFMLQEADNIFRGMLGISCS SCKKETILELKNTLKWKTMKPLIKSYLRSTLFLLNQVTDSEILAFSLVQLRASIIFFA AFRPLLHRLIKIAVHLWVTGEGCLASHSFLVIKHVASVFRSDCFNSCLIKTYKAFIGH CKFVDPVSSKHIQFLRNSFIELCSQDVPNSSSKAMVCVEQLAKILQMGLRAKKKEAVK RICSWQYTNCIDLWVSFISANIQDYDLKPLLYTIIQIINGVAVLFPGPRYLPLRLKCI QWLNNLSSSSGVFIPVASFALDILEYKTGKDNGKPGKDFNFSSSVKLPKHWLKSRNFQ EKCVSSVIELLAMHFAQWSYHITFPELATIPLIRLRKFNETTTIESFRRVVKRFIDQV EQNIEFVQRKRDEVAFSPKDHQSVESFLQFEKSSANTRFTQYYKSIMEKAASRNLVMN QKISSMLQKKSKRKKQLLPNNTLHGGANNEVLEERKVDLSIDDGRDGKRVKKRKT" CDS join(3846474..3846582,3846700..3846760,3847240..3847345, 3847435..3847486,3847571..3847677,3848771..3848839, 3849447..3849977,3850354..3850656,3850829..3851152, 3851251..3851457,3851796..3851885,3851974..3852071, 3852274..3852430) /locus_tag="TCM_043089" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Nucleolar complex protein 2 isoform 1" /protein_id="EOY18565.1" /db_xref="Phytozome:GSVIVT01016319001" /db_xref="TAIR:AT3G55510.1" /translation="MGKLGKKARKFAKKNLQSVLKRKRKLKSMFKKKGSKRDEQDEAE NLQEEQISKSNGRDLESENIEDAALDAVFSDESDVVEDDSESDGYLSEDSGCAYLDGN GSESNQDDMNVDNIGASELSVQNREILLELAGKRKKLKRLEKKDPEFSKFLESYENGL EKLRDEENFSDEDNTSDDGTQNPSKGSAILSKDKLLTSSALNTLCQLVREQRSISALT SLLNGYRAACHCGTEPSGLLDVDSCCGLQDSKTFSKILIFMLQEADNIFRGMLGISCS SCKKETILELKNTLKWKTMKPLIKSYLRSTLFLLNQVTDSEILAFSLVQLRASIIFFA AFRPLLHRLIKIAVHLWVTGEGCLASHSFLVIKHVASVFRSDCFNSCLIKTYKAFIGH CKFVDPVSSKHIQFLRNSFIELCSQDVPNSSSKAMVCVEQLAKILQMGLRAKKKEAVK RICSWQYTNCIDLWVSFISANIQDYDLKPLLYTIIQIINGVAVLFPGPRYLPLRLKCI QWLNNLSSSSGVFIPVASFALDILEYKTGKDNGKPGKDFNFSSSVKLPKHWLKSRNFQ EKCVSSVIELLAMHFAQWSYHITFPELATIPLIRLRKFNETTTIESFRRVVKRFIDQV EQNIEFVQRKRDEVAFSPKDHQSVESFLQFEKSSANTRFTQYYKSIMEKAASRNLVMN QKISSMLQKKSKRKKQLLPNNTLHGGANNEVLEERKVDLSIDDGRDGKRVKKRKT" CDS join(3846474..3846573,3846700..3846760,3847240..3847345, 3847435..3847486,3847571..3847677,3848771..3848839, 3849447..3849977,3850354..3850656,3850829..3851152, 3851251..3851457,3851796..3851885,3851974..3852071, 3852274..3852430) /locus_tag="TCM_043089" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Nucleolar complex protein 2 isoform 4" /protein_id="EOY18566.1" /db_xref="Phytozome:GSVIVT01016319001" /db_xref="TAIR:AT3G55510.1" /translation="MGKLGKKARKFAKKNLQSVLKRKRKLKSMFKKKGDEQDEAENLQ EEQISKSNGRDLESENIEDAALDAVFSDESDVVEDDSESDGYLSEDSGCAYLDGNGSE SNQDDMNVDNIGASELSVQNREILLELAGKRKKLKRLEKKDPEFSKFLESYENGLEKL RDEENFSDEDNTSDDGTQNPSKGSAILSKDKLLTSSALNTLCQLVREQRSISALTSLL NGYRAACHCGTEPSGLLDVDSCCGLQDSKTFSKILIFMLQEADNIFRGMLGISCSSCK KETILELKNTLKWKTMKPLIKSYLRSTLFLLNQVTDSEILAFSLVQLRASIIFFAAFR PLLHRLIKIAVHLWVTGEGCLASHSFLVIKHVASVFRSDCFNSCLIKTYKAFIGHCKF VDPVSSKHIQFLRNSFIELCSQDVPNSSSKAMVCVEQLAKILQMGLRAKKKEAVKRIC SWQYTNCIDLWVSFISANIQDYDLKPLLYTIIQIINGVAVLFPGPRYLPLRLKCIQWL NNLSSSSGVFIPVASFALDILEYKTGKDNGKPGKDFNFSSSVKLPKHWLKSRNFQEKC VSSVIELLAMHFAQWSYHITFPELATIPLIRLRKFNETTTIESFRRVVKRFIDQVEQN IEFVQRKRDEVAFSPKDHQSVESFLQFEKSSANTRFTQYYKSIMEKAASRNLVMNQKI SSMLQKKSKRKKQLLPNNTLHGGANNEVLEERKVDLSIDDGRDGKRVKKRKT" mRNA join(3847433..3847486,3847571..3847677,3848771..3848839, 3849447..3849977,3850354..3850656,3850829..3851152, 3851251..3851359,3852312..3853119) /locus_tag="TCM_043089" /product="Nucleolar complex protein 2 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016319001" /inference="similar to AA sequence:Phytozome:GSVIVT01016319001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9374t11; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc254t4; inference alignment:Newbler:10:TSA:cgbaL_g13906t00001" CDS join(3847573..3847677,3848771..3848839,3849447..3849977, 3850354..3850656,3850829..3851152,3851251..3851457, 3851796..3851885,3851974..3852071,3852274..3852430) /locus_tag="TCM_043089" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nucleolar complex protein 2 isoform 2" /protein_id="EOY18564.1" /db_xref="Phytozome:GSVIVT01016319001" /db_xref="TAIR:AT3G55510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLX7" /translation="MNVDNIGASELSVQNREILLELAGKRKKLKRLEKKDPEFSKFLE SYENGLEKLRDEENFSDEDNTSDDGTQNPSKGSAILSKDKLLTSSALNTLCQLVREQR SISALTSLLNGYRAACHCGTEPSGLLDVDSCCGLQDSKTFSKILIFMLQEADNIFRGM LGISCSSCKKETILELKNTLKWKTMKPLIKSYLRSTLFLLNQVTDSEILAFSLVQLRA SIIFFAAFRPLLHRLIKIAVHLWVTGEGCLASHSFLVIKHVASVFRSDCFNSCLIKTY KAFIGHCKFVDPVSSKHIQFLRNSFIELCSQDVPNSSSKAMVCVEQLAKILQMGLRAK KKEAVKRICSWQYTNCIDLWVSFISANIQDYDLKPLLYTIIQIINGVAVLFPGPRYLP LRLKCIQWLNNLSSSSGVFIPVASFALDILEYKTGKDNGKPGKDFNFSSSVKLPKHWL KSRNFQEKCVSSVIELLAMHFAQWSYHITFPELATIPLIRLRKFNETTTIESFRRVVK RFIDQVEQNIEFVQRKRDEVAFSPKDHQSVESFLQFEKSSANTRFTQYYKSIMEKAAS RNLVMNQKISSMLQKKSKRKKQLLPNNTLHGGANNEVLEERKVDLSIDDGRDGKRVKK RKT" CDS join(3847573..3847677,3848771..3848839,3849447..3849977, 3850354..3850656,3850829..3851152,3851251..3851359, 3852312..3852430) /locus_tag="TCM_043089" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Nucleolar complex protein 2 isoform 5" /protein_id="EOY18567.1" /db_xref="Phytozome:GSVIVT01016319001" /db_xref="TAIR:AT3G55510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLX7" /translation="MNVDNIGASELSVQNREILLELAGKRKKLKRLEKKDPEFSKFLE SYENGLEKLRDEENFSDEDNTSDDGTQNPSKGSAILSKDKLLTSSALNTLCQLVREQR SISALTSLLNGYRAACHCGTEPSGLLDVDSCCGLQDSKTFSKILIFMLQEADNIFRGM LGISCSSCKKETILELKNTLKWKTMKPLIKSYLRSTLFLLNQVTDSEILAFSLVQLRA SIIFFAAFRPLLHRLIKIAVHLWVTGEGCLASHSFLVIKHVASVFRSDCFNSCLIKTY KAFIGHCKFVDPVSSKHIQFLRNSFIELCSQDVPNSSSKAMVCVEQLAKILQMGLRAK KKEAVKRICSWQYTNCIDLWVSFISANIQDYDLKPLLYTIIQIINGVAVLFPGPRYLP LRLKCIQWLNNLSSSSGVFIPVASFALDILEYKTGKDNGKPGKDFNFSSSVKLPKHWL KSRNFQEKCVSSVIELLAMHFAQWSYHITFLLPNNTLHGGANNEVLEERKVDLSIDDG RDGKRVKKRKT" mRNA join(<3847627..3847677,3848771..3848839,3849447..3849977, 3850354..3850656,3850829..3851152,3851251..3851457, 3851796..>3851880) /locus_tag="TCM_043089" /product="Nucleolar complex protein 2 isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016319001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026791t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016319001" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7729t13; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc254t4; inference alignment:Newbler:10:TSA:cgbaL_g13906t00001" CDS join(<3847627..3847677,3848771..3848839,3849447..3849977, 3850354..3850656,3850829..3851152,3851251..3851457, 3851796..>3851879) /locus_tag="TCM_043089" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG026791t2" /codon_start=1 /product="Nucleolar complex protein 2 isoform 6" /protein_id="EOY18568.1" /db_xref="Phytozome:GSVIVT01016319001" /db_xref="TAIR:AT3G55510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLX7" /translation="LLELAGKRKKLKRLEKKDPEFSKFLESYENGLEKLRDEENFSDE DNTSDDGTQNPSKGSAILSKDKLLTSSALNTLCQLVREQRSISALTSLLNGYRAACHC GTEPSGLLDVDSCCGLQDSKTFSKILIFMLQEADNIFRGMLGISCSSCKKETILELKN TLKWKTMKPLIKSYLRSTLFLLNQVTDSEILAFSLVQLRASIIFFAAFRPLLHRLIKI AVHLWVTGEGCLASHSFLVIKHVASVFRSDCFNSCLIKTYKAFIGHCKFVDPVSSKHI QFLRNSFIELCSQDVPNSSSKAMVCVEQLAKILQMGLRAKKKEAVKRICSWQYTNCID LWVSFISANIQDYDLKPLLYTIIQIINGVAVLFPGPRYLPLRLKCIQWLNNLSSSSGV FIPVASFALDILEYKTGKDNGKPGKDFNFSSSVKLPKHWLKSRNFQEKCVSSVIELLA MHFAQWSYHITFPELATIPLIRLRKFNETTTIESFRRVVKRFIDQVEQNIEFVQRKRD EVAFSPKDHQSVESF" gene complement(3853170..3858249) /locus_tag="TCM_043091" /note="dbxref CacaoGD:Thecc1EG043091" mRNA complement(join(3853170..3854360,3858165..3858249)) /locus_tag="TCM_043091" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22530.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22530.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc389t1" CDS complement(3853378..3854247) /locus_tag="TCM_043091" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18569.1" /db_xref="Phytozome:POPTR_0010s22530.1" /translation="MGAQELNPGLETLQQNNDSWQEFGDEAEETLSLCDLVISSDASE YWNGDQYHRNSSSSSSDHQHQDLFEFFSTEDIPAAAAAASSNYQGNNIIFCGKLIPYR GQQQSIEDKPQRLESKVIKPENGTTNSTSCLFPWKTSLSFNKSRTFPPSSSSSAPAKA SQRKSFNKSLSLPAEGSKNSKKLGDDKFDFSVKKVSVIETPVKSRWYLFAFGVGRFPM EIELKDMKMRQSRKSKAMKLQPDGQPENAKCNKERRRSAKGLWRLLKVLGCNNKHTNA AVVQASYSCIPHV" mobile_element complement(3854817..3854832) /note="source:scaffold_2_CACTA_0281 751 796" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3854833..3854920 /note="source:CACAO_Mariner_E220_scaffold_9 9026 9111" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(3854921..3854947) /note="source:scaffold_2_CACTA_0281 665 750" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3854921..3854931 /note="source:scaffold_1_CACTA_0008 14077 14167" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3856293..3856561) /note="source:scaffold_3_CACTA_0377 4977 5240" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3858405..3858487 /note="source:scaffold_1_CACTA_0005 6605 6689" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3859001..3859078 /note="source:scaffold_9_CACTA_0946 17748 17836" /mobile_element_type="transposon:TIR/CACTA" gene 3860587..3863761 /locus_tag="TCM_043092" /note="dbxref CacaoGD:Thecc1EG043092" mRNA join(3860587..3860912,3861781..3862262,3862367..3863673) /locus_tag="TCM_043092" /product="GTP binding Elongation factor Tu family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:53689.m000013" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041078t1" /inference="similar to AA sequence:ricco:29938.m000598" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc18588t15" mRNA join(3860843..3860912,3861781..3862262,3862367..>3863007) /locus_tag="TCM_043092" /product="GTP binding Elongation factor Tu family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:53689.m000013" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043087t2" /inference="similar to AA sequence:ricco:29938.m000598" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc18588t15; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc18588t15" mRNA join(3860863..3860912,3861781..3862262,3862367..3863761) /locus_tag="TCM_043092" /product="GTP binding Elongation factor Tu family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:53689.m000013" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041078t1" /inference="similar to AA sequence:ricco:29938.m000598" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7078t1; alternateUTRof:Thecc1EG043092t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc18588t15" CDS join(3861801..3862262,3862367..3863254) /locus_tag="TCM_043092" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29938.m000598; paralog of Thecc1EG041078t1" /codon_start=1 /product="GTP binding Elongation factor Tu family protein isoform 1" /protein_id="EOY18570.1" /db_xref="TAIR:AT5G60390.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A8WGK7" /translation="MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEK EAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNM ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTP KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLE ALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMLKPGMVVTFGPSGLTTE VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVII MNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDSGMVKM VPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKSAAKKGGK" CDS join(3861801..3862262,3862367..3863254) /locus_tag="TCM_043092" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29938.m000598; paralog of Thecc1EG041078t1" /codon_start=1 /product="GTP binding Elongation factor Tu family protein isoform 1" /protein_id="EOY18571.1" /db_xref="TAIR:AT5G60390.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A8WGK7" /translation="MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEK EAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNM ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTP KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLE ALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMLKPGMVVTFGPSGLTTE VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVII MNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDSGMVKM VPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKSAAKKGGK" CDS join(3861801..3862262,3862367..>3863005) /locus_tag="TCM_043092" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29938.m000598; paralog of Thecc1EG043087t2" /codon_start=1 /product="GTP binding Elongation factor Tu family protein isoform 3" /protein_id="EOY18572.1" /db_xref="TAIR:AT5G60390.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A8WGK7" /translation="MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEK EAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNM ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTP KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLE ALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMLKPGMVVTFGPSGLTTE VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVII MNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKI" gene complement(3864166..3866605) /locus_tag="TCM_043093" /note="dbxref CacaoGD:Thecc1EG043093" mRNA complement(join(3864166..3865090,3866387..3866605)) /locus_tag="TCM_043093" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016316001" /inference="similar to AA sequence:Phytozome:POPTR_0010s22580.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2414t1" CDS complement(join(3864441..3865090,3866387..3866459)) /locus_tag="TCM_043093" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18573.1" /db_xref="Phytozome:POPTR_0010s22580.1" /db_xref="TAIR:AT2G35790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU35" /translation="MARAALFHLLRSQSKQLISRNIHSGYPCRLATWSYTQYAKPNIN SATSIFTVQKRWSSQATTTENDNKISIGPRKGREEEEDEKDRGVVYNGPISSTIKKVK LLSLSTCCLSVSLGPVITFMTSPDMNVILKGAVASSVIFFSATTTAVLHWFVSPYIHK IRWQPGSDSFEVEMMSWLATYIPRTIKFADIRPPETNRPFVTFKANGNFYFVDEEHCH NKALLARLTPQKATHDSALKNL" gene 3867070..3868093 /locus_tag="TCM_043094" /note="dbxref CacaoGD:Thecc1EG043094" mRNA 3867070..3868093 /locus_tag="TCM_043094" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29740.m000494" /inference="similar to AA sequence:ricco:29740.m000494" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2315t1" CDS 3867100..3867816 /locus_tag="TCM_043094" /note="dbxref ricco:29740.m000494" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18574.1" /translation="MFLSHFFSWKFVSHSKNNPKSMDQKDTYNTNQEELEEALSLCDL PLENQVLDPFDHHPPTSPSHELFEFPFTLNTFSNNKDDIVFCGKLIKEQDFDDLDDQS RYLFPLSSARLLNSDKKDLGSLCLAKSKPNSALSTKFFKSQSCSSSSSSRKHKVLIGL AKIPPKMELSDIKKRQSRRNPSPMFPPVAAGDLEVVAAGDGCGGRRRGHHWGLLRPLR CRANLATALAKASLGCIPHV" gene 3869054..3874704 /locus_tag="TCM_043095" /note="dbxref CacaoGD:Thecc1EG043095" mRNA join(3869054..3869332,3870071..3870244,3870638..3870853, 3871559..3871636,3872219..3872443,3872630..3872728, 3872898..3872956,3873767..3873917,3874035..3874704) /locus_tag="TCM_043095" /product="Global transcription factor group isoform 1" /inference="alignment:exonerate- protein:2:ricco:29740.m000495" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005963t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04260.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b041603t1a2; alternateUTRof:Thecc1EG043095t1; inference alignment:Newbler:10:TSA:cgbaP2_g00562t00002" mRNA join(3869054..3869332,3870119..3870244,3870638..3870853, 3871559..3871636,3872219..3872443,3872630..3872728, 3872898..3872956,3873767..3873917,3874035..3874504) /locus_tag="TCM_043095" /product="Global transcription factor group isoform 1" /inference="alignment:exonerate- protein:2:ricco:29740.m000495" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005963t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04260.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00562t00002" mobile_element complement(3869317..3869388) /note="source:CACAO_Mutator_E1149_scaffold_5 4716 4794" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3869330..3869409 /note="source:CACAO_PIF_E144_scaffold_10 5979 6058" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3869346..3869412) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5669 5735" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(3870119..3870244,3870638..3870853,3871559..3871636, 3872219..3872443,3872630..3872728,3872898..3872956, 3873767..3873917,3874035..3874205) /locus_tag="TCM_043095" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005963t1" /codon_start=1 /product="Global transcription factor group isoform 1" /protein_id="EOY18575.1" /db_xref="Phytozome:POPTR_0008s04260.1" /db_xref="TAIR:AT2G34900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLP1" /translation="MEPVMASIPDIGNAGMGISKDNSAEVEQFRCCVDEIFQKVDELE QKVNEVEQFYLNTNKKQQSSSRGSSFGKERDKERHVPSIKKQQQDASRREAAAAKRMQ ELMRQFGTILRQITQHKWAWPFMQPVDVKGLGLHDYYEVIEKPMDFSTIKNQMEAKDG TGYKNVREICADVRLVFNNAMKYNDEGSDVHLMAKTLLEKFEEKWNQLLPKVTEEEKR REEEEAEAQIDMQLVREAAHAKLVREICNELYEVDTHLEQLRETVVQKCRKMSTEEKR NLGTAIARLSTEDLGKALEIIAQNNPGFQAMAEEVEIDIDAQSESTLWRLKFFVKDAL EGQGKSAASAGGNNNNNKRKKEICDAIAKTAKKKSKKPSS" CDS join(3870119..3870244,3870638..3870853,3871559..3871636, 3872219..3872443,3872630..3872728,3872898..3872956, 3873767..3873917,3874035..3874205) /locus_tag="TCM_043095" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005963t1" /codon_start=1 /product="Global transcription factor group isoform 1" /protein_id="EOY18576.1" /db_xref="Phytozome:POPTR_0008s04260.1" /db_xref="TAIR:AT2G34900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLP1" /translation="MEPVMASIPDIGNAGMGISKDNSAEVEQFRCCVDEIFQKVDELE QKVNEVEQFYLNTNKKQQSSSRGSSFGKERDKERHVPSIKKQQQDASRREAAAAKRMQ ELMRQFGTILRQITQHKWAWPFMQPVDVKGLGLHDYYEVIEKPMDFSTIKNQMEAKDG TGYKNVREICADVRLVFNNAMKYNDEGSDVHLMAKTLLEKFEEKWNQLLPKVTEEEKR REEEEAEAQIDMQLVREAAHAKLVREICNELYEVDTHLEQLRETVVQKCRKMSTEEKR NLGTAIARLSTEDLGKALEIIAQNNPGFQAMAEEVEIDIDAQSESTLWRLKFFVKDAL EGQGKSAASAGGNNNNNKRKKEICDAIAKTAKKKSKKPSS" gene complement(3874973..3876729) /locus_tag="TCM_043096" /note="dbxref CacaoGD:Thecc1EG043096" mRNA complement(join(3874973..3875286,3875418..3875654, 3876099..3876191,3876299..3876729)) /locus_tag="TCM_043096" /product="FK506-binding protein 13 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s12230.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s12230.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b041604t1a3; inference alignment:Newbler:10:TSA:cgbaL_g02763t00002" mRNA complement(join(3874974..3875286,3875418..3875486, 3875633..3875654,3876099..3876191,3876299..3876713)) /locus_tag="TCM_043096" /product="FK506-binding protein 13 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s12230.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s12230.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2320t1; inference alignment:Newbler:10:TSA:cgbaL_g02763t00002" mRNA complement(join(3874981..3875286,3875418..3875486, 3875594..3875654,3876099..3876191,3876299..3876695)) /locus_tag="TCM_043096" /product="FK506-binding protein 13 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s12230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001183t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s12230.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02763t00002" CDS complement(join(3875222..3875286,3875418..3875486, 3875633..3875654,3876099..3876191,3876299..3876658)) /locus_tag="TCM_043096" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="FK506-binding protein 13 isoform 2" /protein_id="EOY18578.1" /db_xref="Phytozome:POPTR_0001s12230.1" /db_xref="TAIR:AT5G45680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCY2" /translation="MSSLPFAVGTYSPRNLSKPHSKLLAKNVDKAVTSIKWSSNKQNI SPIEQLNENRRVFQRREAVGFGLCFGLLEAGQLQLPQPSAVAEEAPCELTLSPSGLGF CDKVVGKGPEAVKGQLIKAHYVGRLENGKVFDSSYNRRKPLTFRVGVGEVIKGWDQGG KRTLRLPPELGYGTRGAGCKGGSCIIPPDSVLLFDVEFIGKA" CDS complement(join(3875222..3875286,3875418..3875486, 3875594..3875654,3876099..3876191,3876299..3876658)) /locus_tag="TCM_043096" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG001183t2" /codon_start=1 /product="FK506-binding protein 13 isoform 1" /protein_id="EOY18577.1" /db_xref="Phytozome:POPTR_0001s12230.1" /db_xref="TAIR:AT5G45680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCY2" /translation="MSSLPFAVGTYSPRNLSKPHSKLLAKNVDKAVTSIKWSSNKQNI SPIEQLNENRRVFQRREAVGFGLCFGLLEAGQLQLPQPSAVAEEAPCELTLSPSGLGF CDKVVGKGPEAVKGQLIKAHYVGRLENGKVFDSSYNRRKPLTFRVGVGEVIKGWDQGI LGGDGVPPMLAGGKRTLRLPPELGYGTRGAGCKGGSCIIPPDSVLLFDVEFIGKA" CDS complement(join(3875559..3875654,3876099..3876191, 3876299..3876658)) /locus_tag="TCM_043096" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="FK506-binding protein 13 isoform 3" /protein_id="EOY18579.1" /db_xref="Phytozome:POPTR_0001s12230.1" /db_xref="TAIR:AT5G45680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCY2" /translation="MSSLPFAVGTYSPRNLSKPHSKLLAKNVDKAVTSIKWSSNKQNI SPIEQLNENRRVFQRREAVGFGLCFGLLEAGQLQLPQPSAVAEEAPCELTLSPSGLGF CDKVVGKGPEAVKGQLIKAHYVGRLENGKVFDSSYNRRKPLTFRVGVGEVIKGWDQGI LGGDGVPPMLAGSINLNLNSLY" mobile_element 3875908..3875942 /note="source:CACAO_M_S_E89247_F225_scaffold_8 4009 4045" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3876763..3876797 /note="source:CACAO_Helitron_SS_E7_scaffold_1 584 617" /mobile_element_type="transposon:Helitron" mobile_element 3877903..3877948 /note="source:scaffold_1_CACTA_0001 16775 16820" /mobile_element_type="transposon:TIR/CACTA" gene 3879312..3893185 /locus_tag="TCM_043097" /note="dbxref CacaoGD:Thecc1EG043097" mRNA join(3879312..3879479,3879589..3879650,3880429..3880509, 3881312..3881354,3882647..3882725,3882962..3883127, 3884652..3884782,3886175..3886243,3886529..3886616, 3886735..3886810,3887043..3887116,3887308..3887415, 3887821..3887982,3888941..3889049,3889167..3889210, 3889354..3890527,3890743..3891104,3891691..3892245, 3893050..3893185) /locus_tag="TCM_043097" /product="DNA-binding protein with MIZ/SP-RING zinc finger, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041076t7" /inference="similar to AA sequence:Phytozome:POPTR_0008s04190.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc671t3" mRNA join(3879407..3879479,3879589..3879650,3880429..3880509, 3881312..3881354,3882647..3882725,3882962..3883127, 3884652..3884782,3886175..3886243,3886529..3886616, 3886735..3886810,3887043..3887116,3887308..3887415, 3887821..3887982,3888941..3889045,3889130..3889210, 3889354..3890527,3890743..3891104,3891691..3891796, 3892228..3892256) /locus_tag="TCM_043097" /product="DNA-binding protein with MIZ/SP-RING zinc finger, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041076t7" /inference="similar to AA sequence:Phytozome:POPTR_0008s04190.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc671t10; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc671t3" mRNA join(3879407..3879479,3879589..3879650,3880429..3880509, 3881312..3881354,3882647..3882725,3882962..3883127, 3884652..3884782,3886175..3886243,3886529..3886616, 3886735..3886810,3887043..3887116,3887308..3887415, 3887821..3887982,3888941..3889045,3889354..3890527, 3890743..3891104,3891691..3891715) /locus_tag="TCM_043097" /product="DNA-binding protein with MIZ/SP-RING zinc finger, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041076t7" /inference="similar to AA sequence:Phytozome:POPTR_0008s04190.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc657t12; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc671t3" mRNA join(3879453..3879479,3879589..3879650,3880429..3880510, 3881312..3881354,3882647..3882725,3882962..3883127, 3884652..3884782,3886175..3886243,3886529..3886616, 3886731..3886810,3887043..3887116,3887308..3887415, 3887821..3887982,3888941..3889045,3889130..3889210, 3889354..3890527,3890743..3891104,3891691..3891796, 3892228..3892474) /locus_tag="TCM_043097" /product="DNA-binding protein with MIZ/SP-RING zinc finger, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041076t7" /inference="similar to AA sequence:Phytozome:POPTR_0008s04190.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2341t2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc671t3" mRNA join(3879453..3879479,3879589..3879650,3880429..3880510, 3881312..3881354,3882647..3882725,3882962..3883127, 3884652..3884782,3886175..3886243,3886529..3886616, 3886735..3886810,3887043..3887116,3887308..3887415, 3887821..3887982,3888941..3889045,3889130..3889210, 3889354..3890527,3890741..3891104,3891690..3892203) /locus_tag="TCM_043097" /product="DNA-binding protein with MIZ/SP-RING zinc finger, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041076t7" /inference="similar to AA sequence:Phytozome:POPTR_0008s04190.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2341t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc671t3" mRNA join(3879453..3879479,3879589..3879650,3880429..3880510, 3881312..3881354,3882647..3882725,3882962..3883127, 3884652..3884782,3886175..3886243,3886529..3886616, 3886735..3886810,3887043..3887116,3887308..3887415, 3887821..3887982,3888941..3889045,3889130..3889210, 3889354..3890527,3890743..3891104,3891691..3891796, 3891961..3892203) /locus_tag="TCM_043097" /product="DNA-binding protein with MIZ/SP-RING zinc finger, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041076t7" /inference="similar to AA sequence:Phytozome:POPTR_0008s04190.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2341t4; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc671t3" CDS join(3879627..3879650,3880429..3880509,3881312..3881354, 3882647..3882725,3882962..3883127,3884652..3884782, 3886175..3886243,3886529..3886616,3886735..3886810, 3887043..3887116,3887308..3887415,3887821..3887982, 3888941..3889049,3889167..3889210,3889354..3890527, 3890743..3890870) /locus_tag="TCM_043097" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041076t7" /codon_start=1 /product="DNA-binding protein with MIZ/SP-RING zinc finger, putative isoform 1" /protein_id="EOY18580.1" /db_xref="Phytozome:POPTR_0008s04190.1" /db_xref="TAIR:AT5G60410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLN5" /translation="MDLLSTCRSQLAYFRIKELKDVLTQLGISKQGKKQDLMDRILGL ISDEEVSSTHGSAKKKIIGKEGVAKLIDDAYRKMQIADESDLATRRQTSSLDICNVKH KVEAEDFSYSAVKICCPCGSSLHTDPMIQCIDPGCRVQQHVSCVIIPEKPMEVIPSVP AIFHCEMCRISRADPFCVTVAHLISPVKLIAANIPSDGTNPLLNVEKTFHLTKADSDS LQNTEYDIQAWCVLLNDNVSFRMQWPQYADLHVNGFAVRTLNRPGSQLLGANGRDDGA LITLYVVEGINKISLSACDARSFCFGVRLVKRHTIEQVLGLIPKEADGESFKDALARV CRCVGGGMRTANEDSDSDLEVIADTITVNLRCPMSGSRIKVAGRFKPCVHMGCFDLET FVELNQRSRKAKDIIIDPYFNRITTMMLHCGEDVTDIEVKPDGSWTVKTKDELSDLGK WHFPDGSLHGDMNEVISNSETWRQINKHEKSGNPNLENGTEGGKIEASEHQHLPLRNP KEEDLENFCQMVITLSSSASGSGRDDENPSINQDYGRYDSIPGMNGNEINSIRHNFNS ILSTENQSYGAIGEPDIIIVSDSEEEDVNLVSCHTDYKSCVLNDCGALSAPPRIEQSY LENPVPDSGISSCLDLFNDSGKDVGMSDWAYSSGTQASSRFQLFGEDSDVSDVLIDLE RSGVTCSGPMNSYTLASKLTMNSSRQVPDSSIFSTNINEDDDLVDNPFAFVSVDPSLQ NFLSTQPVGTLAETDLGHCPPISNITHTEDWISLRLGCNGESIGSSVGTIAQSAVSKG LDLINDCRSNEGMNDKARSNRIDNRKKLNGPFSFPRQPRSVRRRGYSIASDSN" CDS join(3879627..3879650,3880429..3880509,3881312..3881354, 3882647..3882725,3882962..3883127,3884652..3884782, 3886175..3886243,3886529..3886616,3886735..3886810, 3887043..3887116,3887308..3887415,3887821..3887982, 3888941..3889045,3889130..3889210,3889354..3890527, 3890743..3890870) /locus_tag="TCM_043097" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041076t7" /codon_start=1 /product="DNA-binding protein with MIZ/SP-RING zinc finger, putative isoform 2" /protein_id="EOY18581.1" /db_xref="Phytozome:POPTR_0008s04190.1" /db_xref="TAIR:AT5G60410.5" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLN5" /translation="MDLLSTCRSQLAYFRIKELKDVLTQLGISKQGKKQDLMDRILGL ISDEEVSSTHGSAKKKIIGKEGVAKLIDDAYRKMQIADESDLATRRQTSSLDICNVKH KVEAEDFSYSAVKICCPCGSSLHTDPMIQCIDPGCRVQQHVSCVIIPEKPMEVIPSVP AIFHCEMCRISRADPFCVTVAHLISPVKLIAANIPSDGTNPLLNVEKTFHLTKADSDS LQNTEYDIQAWCVLLNDNVSFRMQWPQYADLHVNGFAVRTLNRPGSQLLGANGRDDGA LITLYVVEGINKISLSACDARSFCFGVRLVKRHTIEQVLGLIPKEADGESFKDALARV CRCVGGGMRTANEDSDSDLEVIADTITVNLRCPMSGSRIKVAGRFKPCVHMGCFDLET FVELNQRSRKWQCPICLKNYSLEDIIIDPYFNRITTMMLHCGEDVTDIEVKPDGSWTV KTKDELSDLGKWHFPDGSLHGDMNEVISNSETWRQINKHEKSGNPNLENGTEGGKIEA SEHQHLPLRNPKEEDLENFCQMVITLSSSASGSGRDDENPSINQDYGRYDSIPGMNGN EINSIRHNFNSILSTENQSYGAIGEPDIIIVSDSEEEDVNLVSCHTDYKSCVLNDCGA LSAPPRIEQSYLENPVPDSGISSCLDLFNDSGKDVGMSDWAYSSGTQASSRFQLFGED SDVSDVLIDLERSGVTCSGPMNSYTLASKLTMNSSRQVPDSSIFSTNINEDDDLVDNP FAFVSVDPSLQNFLSTQPVGTLAETDLGHCPPISNITHTEDWISLRLGCNGESIGSSV GTIAQSAVSKGLDLINDCRSNEGMNDKARSNRIDNRKKLNGPFSFPRQPRSVRRRGYS IASDSN" CDS join(3879627..3879650,3880429..3880509,3881312..3881354, 3882647..3882725,3882962..3883127,3884652..3884782, 3886175..3886243,3886529..3886616,3886735..3886810, 3887043..3887116,3887308..3887415,3887821..3887982, 3888941..3889045,3889354..3890527,3890743..3890870) /locus_tag="TCM_043097" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG041076t7" /codon_start=1 /product="DNA-binding protein with MIZ/SP-RING zinc finger, putative isoform 6" /protein_id="EOY18585.1" /db_xref="Phytozome:POPTR_0008s04190.1" /db_xref="TAIR:AT5G60410.5" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLN5" /translation="MDLLSTCRSQLAYFRIKELKDVLTQLGISKQGKKQDLMDRILGL ISDEEVSSTHGSAKKKIIGKEGVAKLIDDAYRKMQIADESDLATRRQTSSLDICNVKH KVEAEDFSYSAVKICCPCGSSLHTDPMIQCIDPGCRVQQHVSCVIIPEKPMEVIPSVP AIFHCEMCRISRADPFCVTVAHLISPVKLIAANIPSDGTNPLLNVEKTFHLTKADSDS LQNTEYDIQAWCVLLNDNVSFRMQWPQYADLHVNGFAVRTLNRPGSQLLGANGRDDGA LITLYVVEGINKISLSACDARSFCFGVRLVKRHTIEQVLGLIPKEADGESFKDALARV CRCVGGGMRTANEDSDSDLEVIADTITVNLRCPMSGSRIKVAGRFKPCVHMGCFDLET FVELNQRSRKMLHCGEDVTDIEVKPDGSWTVKTKDELSDLGKWHFPDGSLHGDMNEVI SNSETWRQINKHEKSGNPNLENGTEGGKIEASEHQHLPLRNPKEEDLENFCQMVITLS SSASGSGRDDENPSINQDYGRYDSIPGMNGNEINSIRHNFNSILSTENQSYGAIGEPD IIIVSDSEEEDVNLVSCHTDYKSCVLNDCGALSAPPRIEQSYLENPVPDSGISSCLDL FNDSGKDVGMSDWAYSSGTQASSRFQLFGEDSDVSDVLIDLERSGVTCSGPMNSYTLA SKLTMNSSRQVPDSSIFSTNINEDDDLVDNPFAFVSVDPSLQNFLSTQPVGTLAETDL GHCPPISNITHTEDWISLRLGCNGESIGSSVGTIAQSAVSKGLDLINDCRSNEGMNDK ARSNRIDNRKKLNGPFSFPRQPRSVRRRGYSIASDSN" CDS join(3880466..3880510,3881312..3881354,3882647..3882725, 3882962..3883127,3884652..3884782,3886175..3886243, 3886529..3886616,3886735..3886810,3887043..3887116, 3887308..3887415,3887821..3887982,3888941..3889045, 3889130..3889210,3889354..3890527,3890743..3890870) /locus_tag="TCM_043097" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041076t7" /codon_start=1 /product="DNA-binding protein with MIZ/SP-RING zinc finger, putative isoform 3" /protein_id="EOY18582.1" /db_xref="Phytozome:POPTR_0008s04190.1" /db_xref="TAIR:AT5G60410.5" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLN5" /translation="MFLPSLVFQNKGRSRDLMDRILGLISDEEVSSTHGSAKKKIIGK EGVAKLIDDAYRKMQIADESDLATRRQTSSLDICNVKHKVEAEDFSYSAVKICCPCGS SLHTDPMIQCIDPGCRVQQHVSCVIIPEKPMEVIPSVPAIFHCEMCRISRADPFCVTV AHLISPVKLIAANIPSDGTNPLLNVEKTFHLTKADSDSLQNTEYDIQAWCVLLNDNVS FRMQWPQYADLHVNGFAVRTLNRPGSQLLGANGRDDGALITLYVVEGINKISLSACDA RSFCFGVRLVKRHTIEQVLGLIPKEADGESFKDALARVCRCVGGGMRTANEDSDSDLE VIADTITVNLRCPMSGSRIKVAGRFKPCVHMGCFDLETFVELNQRSRKWQCPICLKNY SLEDIIIDPYFNRITTMMLHCGEDVTDIEVKPDGSWTVKTKDELSDLGKWHFPDGSLH GDMNEVISNSETWRQINKHEKSGNPNLENGTEGGKIEASEHQHLPLRNPKEEDLENFC QMVITLSSSASGSGRDDENPSINQDYGRYDSIPGMNGNEINSIRHNFNSILSTENQSY GAIGEPDIIIVSDSEEEDVNLVSCHTDYKSCVLNDCGALSAPPRIEQSYLENPVPDSG ISSCLDLFNDSGKDVGMSDWAYSSGTQASSRFQLFGEDSDVSDVLIDLERSGVTCSGP MNSYTLASKLTMNSSRQVPDSSIFSTNINEDDDLVDNPFAFVSVDPSLQNFLSTQPVG TLAETDLGHCPPISNITHTEDWISLRLGCNGESIGSSVGTIAQSAVSKGLDLINDCRS NEGMNDKARSNRIDNRKKLNGPFSFPRQPRSVRRRGYSIASDSN" CDS join(3880466..3880510,3881312..3881354,3882647..3882725, 3882962..3883127,3884652..3884782,3886175..3886243, 3886529..3886616,3886735..3886810,3887043..3887116, 3887308..3887415,3887821..3887982,3888941..3889045, 3889130..3889210,3889354..3890527,3890741..3890748) /locus_tag="TCM_043097" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG041076t7" /codon_start=1 /product="DNA-binding protein with MIZ/SP-RING zinc finger, putative isoform 4" /protein_id="EOY18583.1" /db_xref="Phytozome:POPTR_0008s04190.1" /db_xref="TAIR:AT5G60410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLN5" /translation="MFLPSLVFQNKGRSRDLMDRILGLISDEEVSSTHGSAKKKIIGK EGVAKLIDDAYRKMQIADESDLATRRQTSSLDICNVKHKVEAEDFSYSAVKICCPCGS SLHTDPMIQCIDPGCRVQQHVSCVIIPEKPMEVIPSVPAIFHCEMCRISRADPFCVTV AHLISPVKLIAANIPSDGTNPLLNVEKTFHLTKADSDSLQNTEYDIQAWCVLLNDNVS FRMQWPQYADLHVNGFAVRTLNRPGSQLLGANGRDDGALITLYVVEGINKISLSACDA RSFCFGVRLVKRHTIEQVLGLIPKEADGESFKDALARVCRCVGGGMRTANEDSDSDLE VIADTITVNLRCPMSGSRIKVAGRFKPCVHMGCFDLETFVELNQRSRKWQCPICLKNY SLEDIIIDPYFNRITTMMLHCGEDVTDIEVKPDGSWTVKTKDELSDLGKWHFPDGSLH GDMNEVISNSETWRQINKHEKSGNPNLENGTEGGKIEASEHQHLPLRNPKEEDLENFC QMVITLSSSASGSGRDDENPSINQDYGRYDSIPGMNGNEINSIRHNFNSILSTENQSY GAIGEPDIIIVSDSEEEDVNLVSCHTDYKSCVLNDCGALSAPPRIEQSYLENPVPDSG ISSCLDLFNDSGKDVGMSDWAYSSGTQASSRFQLFGEDSDVSDVLIDLERSGVTCSGP MNSYTLASKLTMNSSRQVPDSSIFSTNINEDDDLVDNPFAFVSVDPSLQNFLSTQPVG TLAETDLGHCPPISNITHTEDWISLRLGCNGESIGSSVGTIAQSAVSKGLDLINDCRS NEEG" mobile_element 3880945..3881008 /note="source:INTACT38_F18_scaffold_9-int 4919 4982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3881009..3881124 /note="source:CACAO_M_S_E19828_F19_scaffold_3 14434 14549" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(3886606..3886616,3886731..3886810,3887043..3887116, 3887308..3887415,3887821..3887982,3888941..3889045, 3889130..3889210,3889354..3890527,3890743..3890870) /locus_tag="TCM_043097" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG041076t7" /codon_start=1 /product="DNA-binding protein with MIZ/SP-RING zinc finger, putative isoform 5" /protein_id="EOY18584.1" /db_xref="Phytozome:POPTR_0008s04190.1" /db_xref="TAIR:AT5G60410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLN5" /translation="MIFSQAWCVLLNDNVSFRMQWPQYADLHVNGFAVRTLNRPGSQL LGANGRDDGALITLYVVEGINKISLSACDARSFCFGVRLVKRHTIEQVLGLIPKEADG ESFKDALARVCRCVGGGMRTANEDSDSDLEVIADTITVNLRCPMSGSRIKVAGRFKPC VHMGCFDLETFVELNQRSRKWQCPICLKNYSLEDIIIDPYFNRITTMMLHCGEDVTDI EVKPDGSWTVKTKDELSDLGKWHFPDGSLHGDMNEVISNSETWRQINKHEKSGNPNLE NGTEGGKIEASEHQHLPLRNPKEEDLENFCQMVITLSSSASGSGRDDENPSINQDYGR YDSIPGMNGNEINSIRHNFNSILSTENQSYGAIGEPDIIIVSDSEEEDVNLVSCHTDY KSCVLNDCGALSAPPRIEQSYLENPVPDSGISSCLDLFNDSGKDVGMSDWAYSSGTQA SSRFQLFGEDSDVSDVLIDLERSGVTCSGPMNSYTLASKLTMNSSRQVPDSSIFSTNI NEDDDLVDNPFAFVSVDPSLQNFLSTQPVGTLAETDLGHCPPISNITHTEDWISLRLG CNGESIGSSVGTIAQSAVSKGLDLINDCRSNEGMNDKARSNRIDNRKKLNGPFSFPRQ PRSVRRRGYSIASDSN" gene 3893247..3899623 /locus_tag="TCM_043098" /note="dbxref CacaoGD:Thecc1EG043098" mRNA join(3893247..3893516,3893753..3894122,3894250..3894311, 3894800..3894908,3895732..3895799,3896616..3896693, 3897354..3897418,3897739..3897805,3897915..3898097, 3898654..3898710,3898854..3898949,3899051..>3899078) /locus_tag="TCM_043098" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g31830.1" /inference="similar to AA sequence:frave:gene23204" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc322t1; inference alignment:Newbler:10:TSA:cgbaB_g06554t00001" mRNA join(3893247..3893516,3893753..3894110,3894250..3894329, 3894800..3894908,3895732..3895799,3896616..3896693, 3897354..3897418,3897739..3897805,3897915..3898097, 3898654..3898710,3898854..3898949,3899051..>3899078) /locus_tag="TCM_043098" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g31830.1" /inference="similar to AA sequence:frave:gene23204" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc322t2; inference alignment:Newbler:10:TSA:cgbaB_g06554t00001" mRNA join(3893357..3893516,3893753..3894122,3894250..3894329, 3894800..3894908,3895732..3895799,3896616..3896693, 3897354..3897418,3897739..3897805,3897915..3898097, 3898654..3898710,3898854..3898949,3899051..3899623) /locus_tag="TCM_043098" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g31830.1" /inference="similar to AA sequence:frave:gene23204" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06554t00001" CDS join(3893756..3894122,3894250..3894329,3894800..3894908, 3895732..3895799,3896616..3896693,3897354..3897418, 3897739..3897805,3897915..3898097,3898654..3898710, 3898854..3898949,3899051..3899185) /locus_tag="TCM_043098" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene23204" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18586.1" /db_xref="TAIR:AT5G50840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KAG0" /translation="MENPEANQLPEVDSLPDGFVESPSERLAPKTPILEQEKPLQPDY REDDLVSAEFGASKGQKQRTFPVPLSEVDGFDGSLDSVEGKLVSNESSNSVPEAAAVG EAECSEVKGEVKGECQSTERTVEGGSETNLKETSSSESVDLVKNKKPETTETKRKNAK RTVKTEKEFLEFSLKYQQVLAERDAAIAVRDKLESLCRELQRQNKMLMDECKRVSTEG QNLRLDLSARFQDAIKDVSIKLEEQKDECLSQLKENEMLRNKLKQLADQYALSEQQYA QKLKQKTLELQISDLKIKQHEEKLIQEQAQMKVYAEQVSQLLATEKNLRLQLTADGEK FQQFQDALLKSNEVFETFKQEIEKMAKSIKELKKENVFLKSKCDKSDVTLIELVEERE RLKKQLEKTKNQKEKLESLCRSLQAERKQSSTGGNSSDTVAV" CDS join(3893756..3894122,3894250..3894311,3894800..3894908, 3895732..3895799,3896616..3896693,3897354..3897418, 3897739..3897805,3897915..3898097,3898654..3898710, 3898854..3898949,3899051..>3899077) /locus_tag="TCM_043098" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene23204" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18587.1" /db_xref="TAIR:AT5G50840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KAG0" /translation="MENPEANQLPEVDSLPDGFVESPSERLAPKTPILEQEKPLQPDY REDDLVSAEFGASKGQKQRTFPVPLSEVDGFDGSLDSVEGKLVSNESSNSVPEAAAVG EAECSEVKGEVKGECQSTERTVEGGSETNLKETSSSESVDLETTETKRKNAKRTVKTE KEFLEFSLKYQQVLAERDAAIAVRDKLESLCRELQRQNKMLMDECKRVSTEGQNLRLD LSARFQDAIKDVSIKLEEQKDECLSQLKENEMLRNKLKQLADQYALSEQQYAQKLKQK TLELQISDLKIKQHEEKLIQEQAQMKVYAEQVSQLLATEKNLRLQLTADGEKFQQFQD ALLKSNEVFETFKQEIEKMAKSIKELKKENVFLKSKCDKSDVTLIELVEERERLKKQL E" CDS join(3893756..3894110,3894250..3894329,3894800..3894908, 3895732..3895799,3896616..3896693,3897354..3897418, 3897739..3897805,3897915..3898097,3898654..3898710, 3898854..3898949,3899051..>3899077) /locus_tag="TCM_043098" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene23204" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY18588.1" /db_xref="TAIR:AT5G50840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KAG0" /translation="MENPEANQLPEVDSLPDGFVESPSERLAPKTPILEQEKPLQPDY REDDLVSAEFGASKGQKQRTFPVPLSEVDGFDGSLDSVEGKLVSNESSNSVPEAAAVG EAECSEVKGEVKGECQTVEGGSETNLKETSSSESVDLVKNKKPETTETKRKNAKRTVK TEKEFLEFSLKYQQVLAERDAAIAVRDKLESLCRELQRQNKMLMDECKRVSTEGQNLR LDLSARFQDAIKDVSIKLEEQKDECLSQLKENEMLRNKLKQLADQYALSEQQYAQKLK QKTLELQISDLKIKQHEEKLIQEQAQMKVYAEQVSQLLATEKNLRLQLTADGEKFQQF QDALLKSNEVFETFKQEIEKMAKSIKELKKENVFLKSKCDKSDVTLIELVEERERLKK QLE" gene 3900176..3905005 /locus_tag="TCM_043099" /note="dbxref CacaoGD:Thecc1EG043099" mRNA join(3900176..3900516,3902037..3902145,3903089..3903219, 3903354..3903422,3903535..3903738,3904476..3905005) /locus_tag="TCM_043099" /product="Transcription initiation factor IIF isoform 3" /inference="alignment:exonerate- protein:2:ricco:28164.m000044" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034139t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016312001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b041607t1a2; alternateUTRof:Thecc1EG043099t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17399t1" mRNA join(3900180..3900516,3902037..3902145,3903089..3903219, 3903354..3903422,3903592..3903738,3904476..3904822) /locus_tag="TCM_043099" /product="JHL18I08.10 protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28164.m000044" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034139t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016312001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17399t1" mRNA join(3900197..3900516,3902037..3902145,3903089..3903219, 3903351..3903422,3903592..3903738,3904476..3905005) /locus_tag="TCM_043099" /product="Transcription initiation factor IIF isoform 2" /inference="alignment:exonerate- protein:2:ricco:28164.m000044" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034139t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016312001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2322t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17399t1; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8536t5_C1" mRNA join(3900235..3900516,3902037..3902145,3903089..3903219, 3903354..3903422,3903535..3903617) /locus_tag="TCM_043099" /product="Transcription initiation factor IIF isoform 3" /inference="alignment:exonerate- protein:2:ricco:28164.m000044" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034139t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016312001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9863t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17399t1; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8536t5_C1" CDS join(3900301..3900516,3902037..3902145,3903089..3903219, 3903351..3903422,3903592..3903738,3904476..3904592) /locus_tag="TCM_043099" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034139t1" /codon_start=1 /product="Transcription initiation factor IIF isoform 2" /protein_id="EOY18590.1" /db_xref="Phytozome:GSVIVT01016312001" /db_xref="TAIR:AT3G52270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU66" /translation="MENKDSYLETSKAERSMWLMKCPALVSRSFKTPQPSSISTSSSP PTPQAVAKVILSIDPRVSNDDNDSSSPQFTMELVGTEIGDGPKRYSMEMSKDLVPMSV FSESSQGKLSVEGKILNKFDMRPHDENIENYGKLCRERTNKYMTKSRQIQQVIDNDNG THMRPMPGMMIATVFNEKKKTPTKTSETKRTRRDRGEMEDIMFKLFERQPNWTLRQLI QETDQPEQFLKDILKDLCVYNNKGTNQGSYELKPEYKKASNDTNP" CDS join(3900301..3900516,3902037..3902145,3903089..3903219, 3903354..3903422,3903592..3903738,3904476..3904592) /locus_tag="TCM_043099" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034139t1" /codon_start=1 /product="JHL18I08.10 protein isoform 1" /protein_id="EOY18589.1" /db_xref="Phytozome:GSVIVT01016312001" /db_xref="TAIR:AT3G52270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU66" /translation="MENKDSYLETSKAERSMWLMKCPALVSRSFKTPQPSSISTSSSP PTPQAVAKVILSIDPRVSNDDNDSSSPQFTMELVGTEIGDGPKRYSMEMSKDLVPMSV FSESSQGKLSVEGKILNKFDMRPHDENIENYGKLCRERTNKYMTKSRQIQVIDNDNGT HMRPMPGMMIATVFNEKKKTPTKTSETKRTRRDRGEMEDIMFKLFERQPNWTLRQLIQ ETDQPEQFLKDILKDLCVYNNKGTNQGSYELKPEYKKASNDTNP" CDS join(3900301..3900516,3902037..3902145,3903089..3903219, 3903354..3903422,3903535..3903567) /locus_tag="TCM_043099" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG034139t2" /codon_start=1 /product="Transcription initiation factor IIF isoform 3" /protein_id="EOY18591.1" /db_xref="Phytozome:GSVIVT01016312001" /db_xref="TAIR:AT3G52270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU66" /translation="MENKDSYLETSKAERSMWLMKCPALVSRSFKTPQPSSISTSSSP PTPQAVAKVILSIDPRVSNDDNDSSSPQFTMELVGTEIGDGPKRYSMEMSKDLVPMSV FSESSQGKLSVEGKILNKFDMRPHDENIENYGKLCRERTNKYMTKSRQIQVIDNDNGT HMRPMPGMMIATVFNNIFIICPPFV" CDS join(3900301..3900516,3902037..3902145,3903089..3903219, 3903354..3903422,3903535..3903567) /locus_tag="TCM_043099" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG034139t2" /codon_start=1 /product="Transcription initiation factor IIF isoform 3" /protein_id="EOY18592.1" /db_xref="Phytozome:GSVIVT01016312001" /db_xref="TAIR:AT3G52270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU66" /translation="MENKDSYLETSKAERSMWLMKCPALVSRSFKTPQPSSISTSSSP PTPQAVAKVILSIDPRVSNDDNDSSSPQFTMELVGTEIGDGPKRYSMEMSKDLVPMSV FSESSQGKLSVEGKILNKFDMRPHDENIENYGKLCRERTNKYMTKSRQIQVIDNDNGT HMRPMPGMMIATVFNNIFIICPPFV" mobile_element 3905761..3905877 /note="source:scaffold_2_CACTA_0281 4709 4827" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3905794..3905896) /note="source:scaffold_1_CACTA_0008 14067 14167" /mobile_element_type="transposon:TIR/CACTA" gene 3906381..3909101 /locus_tag="TCM_046954" /note="dbxref CacaoGD:Thecc1EG046954" mRNA join(3906381..3906522,3907589..3907735,3907842..3908135, 3908291..3909101) /locus_tag="TCM_046954" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:28164.m000045" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016674t2" /inference="similar to AA sequence:ricco:28164.m000045" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08041t00001" CDS join(3907601..3907735,3907842..3908135,3908291..3908923) /locus_tag="TCM_046954" /note="dbxref ricco:28164.m000045; paralog of Thecc1EG016674t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18593.1" /db_xref="TAIR:AT4G25030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SW23" /translation="MDFFLRGLNEDSASSQMDILRCPFLRNINEPTNFSLSSAMPFPM PVRGAKGPIFEDGPNFDMAFRLFHGRDGVVPLSERSSFRTEKTEPETTPPKFNPLAAR AATISLSSFGPGGPFSFDAFSNKWNNQKGKSKPSKKESSSQGGNSNHEALGNEWLQNG NCPIAKSYRAVSGVLPLVAKVFQPPPGMKFRCPPAVVAARAALAQTAFAKNLRPQSLP TKVLVIGMLGMAANVPLGIWREHTEKFSPSWFVAIHAAVPFIAMLRKSVLMPKTAMAF TIAASVLGQVIGSRAERYRMKAVAAKRLGIEESSVSVGDASQFEVVAVKNGYCSKDVE WDPVSLQVARPSSSTDVFC" gene 3909602..3914464 /locus_tag="TCM_046955" /note="dbxref CacaoGD:Thecc1EG046955" mRNA join(3909602..3909742,3909820..3909877,3909963..3909990, 3910084..3910130,3910229..3910319,3910860..3911025, 3911461..3911548,3912388..3912472,3912659..3912734, 3912931..3912998,3913217..3913286,3913454..3913532, 3914051..3914144,3914298..3914464) /locus_tag="TCM_046955" /product="Pseudouridine synthase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04160.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04160.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09186t00001" CDS join(3909640..3909742,3909820..3909877,3909963..3909990, 3910084..3910130,3910229..3910319,3910860..3911025, 3911461..3911548,3912388..3912472,3912659..3912734, 3912931..3912998,3913217..3913286,3913454..3913532, 3914051..3914144,3914298..3914381) /locus_tag="TCM_046955" /codon_start=1 /product="Pseudouridine synthase family protein" /protein_id="EOY18594.1" /db_xref="Phytozome:POPTR_0008s04160.1" /db_xref="TAIR:AT3G52260.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5M721" /translation="MSNDSQTQSLVFGLPWPELNDGLFYDDVIKPSDSELTLIEFYSS KYKNSAPSQGWLQRIQNGQISVDGRVVRDPNTILRGSSELVYHRLPWKEPDAPHALEV LYEDDDMIALNKPSGLQVLPGGLFQQRTVLTQLSWRMRKQTSSLASQESHPVPVHRLG RGTSGILLCAKTKAAKTCLAAYFADGTSLIGANSNRKMQPSCTRKISKIYRALVTGIL GEDKVVINQPIGIVQYPGVAKGLYVASPSGKPALSKVEVLEKDEQQNHTLVQVQIESG RPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDSEFVDENYAQDGGYQRPVNPVPGDCG YYLHAHRLLLSHPTTDEIINITAPLPPVLQTQDEVRRSRESQSI" gene complement(3914275..3923322) /locus_tag="TCM_043101" /note="dbxref CacaoGD:Thecc1EG043101" mRNA complement(join(3914275..3915347,3916431..3917783, 3918948..3920120,3921089..3921961,3922740..3923026, 3923134..3923322)) /locus_tag="TCM_043101" /product="Duplicated homeodomain-like superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene23202" /inference="similar to AA sequence:Phytozome:POPTR_0010s22670.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2756t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2756t2" mRNA complement(join(3914275..3915347,3915466..3916309, 3916431..3917786,3918948..3920120,3921089..3921961, 3922740..3923026,3923134..3923322)) /locus_tag="TCM_043101" /product="Duplicated homeodomain-like superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23202" /inference="similar to AA sequence:Phytozome:POPTR_0010s22670.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2756t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2756t2" CDS complement(join(3914782..3915347,3916431..3917783, 3918948..3920120,3921089..3921961,3922740..3922929)) /locus_tag="TCM_043101" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Duplicated homeodomain-like superfamily protein isoform 2" /protein_id="EOY18596.1" /db_xref="Phytozome:POPTR_0010s22670.1" /translation="MPPEPLPWDRKDFYKERKHERTESQPQQPSTARWRDSSSMSSYQ HGSFREFTRWGSADLRRPPGHGKQGSWHLFAEENGGHGYVPSRSGDKMLDDESCRQSV SRGDGKYSRNSSRENNRASYSQRDWRAHSWEMSNGSPNTPGRPHDVNNEQRSVDDMLT YPSHAHSDFVSTWDQLHKDQHDNKTSGVNGLGTGQRCERENSVGSMDWKPLKWSRSGS LSSRGSGFSHSSSSKSLGGVDSGEGKLELQQKNLTPVQSPSGDAAACVTSAAPSDETM SRKKPRLGWGEGLAKYEKKKVEGPDTSMNRGVATISVGNTEPNNSLGSNLAEKSPRVL GFSDCASPATPSSVACSSSPGVEEKSFGKAANIDNDISNLCGSPSLGSQNHLEGPSFN LEKLDMNSIINMGSSLVDLLQSDDPSTVDSSFVRSTAMNKLLLWKGDVLKALETTESE IDSLENELKTLKANSGSRYPCPATSSSLPMEENGRACEELEAISNMIPRPAPLKIDPC GDALEEKVPLCNGDLEEVNADAKDGDIDSPGTATSKFVEPSSLEKAVSPSDVKLHECS GDLGTVQLTTMGEVNLAPGSSNEGTSVPFSGEGSALEKIDNDVHGPEPSNSVADIENI MYDVIIATNKELANSASKVFNNLLPKDWCSVISEIANGACWQTDSLIREKIVKRKQCI RFKERVLMLKFKAFQHAWKEDMRSPLIRKYRAKSQKKYELSLRSTLGGYQKHRSSIRS RLTSPGNLSLESNVEMINFVSKLLSDSHVRLYRNALKMPALFLDEKEKQVSRFISSNG LVEDPCAVEKERALINPWTSEEKEIFMDKLAAFGKDFRKIASFLDHKTTADCVEFYYK NHKSECFEKTKKKLDLSKQGKSTANTYLLTSGKKWSRELNAASLDVLGEASVIAAHAE SGMRNRQTSAGRIFLGGRFDSKTSRVDDSIVERSSSFDVIGNDRETVAADVLAGICGS LSSEAMSSCITSSADPGESYQREWKCQKVDSVVKRPSTSDVTQNIDDDTCSDESCGEM DPADWTDEEKSVFIQAVSLYGKDFAMISRCVGTRSRDQCKVFFSKARKCLGLDLIHPR TRNLGTPMSDDANGGGSDIEDACVLESSVVCSDKLGSKVEEDLPSTIVSMNVDESDPT GEVSLQTDLNVSEENNGRLVDHRDSEAVETMVSDVGQPEPICESGGDMNVENVPKRSY GFWDGNRIQTGLSSLPDSAILVAKYPAAFVNYPSSSSQMEQQALQTVVRSNERNLNGV SVYPSREISSNNGVVDYQVYRGRDCTKVAPFTVDMKQRQEMFSEMQRRNRFDAIPNLQ QQGRGGMVGMNVVGRGGVLVGGPSISDPVAVLRMQYAKTEQYGGQSGSIVREEESWRG KGDIGR" CDS complement(join(3916281..3916309,3916431..3917786, 3918948..3920120,3921089..3921961,3922740..3922929)) /locus_tag="TCM_043101" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Duplicated homeodomain-like superfamily protein isoform 1" /protein_id="EOY18595.1" /db_xref="Phytozome:POPTR_0010s22670.1" /db_xref="TAIR:AT3G52250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AZS6" /translation="MPPEPLPWDRKDFYKERKHERTESQPQQPSTARWRDSSSMSSYQ HGSFREFTRWGSADLRRPPGHGKQGSWHLFAEENGGHGYVPSRSGDKMLDDESCRQSV SRGDGKYSRNSSRENNRASYSQRDWRAHSWEMSNGSPNTPGRPHDVNNEQRSVDDMLT YPSHAHSDFVSTWDQLHKDQHDNKTSGVNGLGTGQRCERENSVGSMDWKPLKWSRSGS LSSRGSGFSHSSSSKSLGGVDSGEGKLELQQKNLTPVQSPSGDAAACVTSAAPSDETM SRKKPRLGWGEGLAKYEKKKVEGPDTSMNRGVATISVGNTEPNNSLGSNLAEKSPRVL GFSDCASPATPSSVACSSSPGVEEKSFGKAANIDNDISNLCGSPSLGSQNHLEGPSFN LEKLDMNSIINMGSSLVDLLQSDDPSTVDSSFVRSTAMNKLLLWKGDVLKALETTESE IDSLENELKTLKANSGSRYPCPATSSSLPMEENGRACEELEAISNMIPRPAPLKIDPC GDALEEKVPLCNGDLEEVNADAKDGDIDSPGTATSKFVEPSSLEKAVSPSDVKLHECS GDLGTVQLTTMGEVNLAPGSSNEGTSVPFSGEGSALEKIDNDVHGPEPSNSVADIENI MYDVIIATNKELANSASKVFNNLLPKDWCSVISEIANGACWQTDSLIREKIVKRKQCI RFKERVLMLKFKAFQHAWKEDMRSPLIRKYRAKSQKKYELSLRSTLGGYQKHRSSIRS RLTSPAGNLSLESNVEMINFVSKLLSDSHVRLYRNALKMPALFLDEKEKQVSRFISSN GLVEDPCAVEKERALINPWTSEEKEIFMDKLAAFGKDFRKIASFLDHKTTADCVEFYY KNHKSECFEKTKKKLDLSKQGKSTANTYLLTSGKKWSRELNAASLDVLGEASVIAAHA ESGMRNRQTSAGRIFLGGRFDSKTSRVDDSIVERSSSFDVIGNDRETVAADVLAGICG SLSSEAMSSCITSSADPGESYQREWKCQKVDSVVKRPSTSDVTQNIDDDTCSDESCGE MDPADWTDEEKSVFIQAVSLYGKDFAMISRCVGTRSRDQCKVFFSKARKCLGLDLIHP RTRNLGTPMSDDANGGGSDIEDACVLESSVVCSDKLGSKVEEDLPSTIVSMNVDESDP TGEVSLQTDLNVSEENNGRLVDHRDSEAVETMVSDVGQPEPICESGGDMNVGQLILAL LV" gene 3923550..3944304 /locus_tag="TCM_043102" /note="dbxref CacaoGD:Thecc1EG043102" mRNA join(3923550..3923689,3936945..3937404,3937497..3937592, 3937736..3937828,3937931..3938016,3938137..3938397, 3939803..3939930,3940014..3940109,3941430..3941587, 3941745..3942464,3944085..3944304) /locus_tag="TCM_043102" /product="Serine carboxypeptidase-like 27 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043104t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04140.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2451t1" CDS join(3923597..3923689,3936945..3937404,3937497..3937592, 3937736..3937828,3937931..3938016,3938137..3938397, 3939803..3939930,3940014..3940109,3941430..3941587, 3941745..3941932) /locus_tag="TCM_043102" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043104t1" /codon_start=1 /product="Serine carboxypeptidase-like 27 isoform 1" /protein_id="EOY18597.1" /db_xref="Phytozome:POPTR_0008s04140.1" /db_xref="TAIR:AT3G07990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFB5" /translation="MDPPFASSFNAPKLPLDLIRNYENRKKFSFSDSPKIPSLKTRKC FWICDSGFCLFCEFLIGLLMGQSRFIVFSILVFFCCTRFCSSFGDQNLDKITELPGQP KNVEFNQYSGYVTVNEQAGRALFYWLIELPVSRSPETRPLVLWLNGGPGCSSLAYGAA EEIGPFHIRPDGRTLYLNRYAWNNLANMLFLESPAGVGFSYSNTTSDLYTAGDRRTAE DAYAFLVNWFERFPQYKHRDFYIAGESYAGHYVPQLSQIVYERNRGVQNPVINFKGFL VGNAVTDDYHDFVGTFEYWWTHGLISDSTYRSLRVACDLGSSTHPSLQCMSALRVAEV EQGNIDPYSIFTQPCKDTATLKRNMRGHYPWMSRAYDPCTERYSKVYFNLPEVQKALH ANVTGISYPWQTCSDLVGNYWADAPLSMLPIYKELIAAGFRIWVYSGDTDAVVPVTAT RYSIDALKLPTVTNWYPWYDNGKVSTDNVIQFLELVSVEIGLHRCLSHQISHFLIQVG GWSQAYRGLTFVTVTGAGHEVPLHRPRQAFILFRSFLENKPMPS" gene complement(3928620..3935242) /locus_tag="TCM_043103" /note="dbxref CacaoGD:Thecc1EG043103" mRNA complement(join(3928620..3929858,3933860..3934144, 3934989..3935242)) /locus_tag="TCM_043103" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(join(3929563..3929858,3933860..3933905)) /locus_tag="TCM_043103" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18599.1" /translation="MLTTLQSEGLKMMAFGISIFAADGLGRCRLRCATLALDIFSRAV LECTSWIIVKTTDGTCEKFSRVYLGHSTKVRSFACASSTCRSADVGTFWRFVVLTSSS LPAKVRSAKLN" mobile_element complement(3932095..3932236) /note="source:MITE_CACTA_5 93 231" /mobile_element_type="transposon:TIR/MITE" mRNA join(3936950..3937404,3937497..3937592,3937736..3937828, 3937931..3938016,3938137..3938397,3939803..3939930, 3940014..3940109,3941430..3941483,3942011..3942334) /locus_tag="TCM_043102" /product="Serine carboxypeptidase-like 27 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043104t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04140.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9228t7; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9228t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2451t1" CDS join(3937041..3937404,3937497..3937592,3937736..3937828, 3937931..3938016,3938137..3938397,3939803..3939930, 3940014..3940109,3941430..3941483,3942011..3942104) /locus_tag="TCM_043102" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043104t1" /codon_start=1 /product="Serine carboxypeptidase-like 27 isoform 2" /protein_id="EOY18598.1" /db_xref="Phytozome:POPTR_0008s04140.1" /db_xref="TAIR:AT3G07990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFB5" /translation="MGQSRFIVFSILVFFCCTRFCSSFGDQNLDKITELPGQPKNVEF NQYSGYVTVNEQAGRALFYWLIELPVSRSPETRPLVLWLNGGPGCSSLAYGAAEEIGP FHIRPDGRTLYLNRYAWNNLANMLFLESPAGVGFSYSNTTSDLYTAGDRRTAEDAYAF LVNWFERFPQYKHRDFYIAGESYAGHYVPQLSQIVYERNRGVQNPVINFKGFLVGNAV TDDYHDFVGTFEYWWTHGLISDSTYRSLRVACDLGSSTHPSLQCMSALRVAEVEQGNI DPYSIFTQPCKDTATLKRNMRGHYPWMSRAYDPCTERYSKVYFNLPEVQKALHANVTG ISYPWQTCSDLVGNYWADAPLSMLPIYKELIAAGFRIWVYSGDTDAVVPVTATRYSID AAMKQVAKRDAFFSCAPPFLPTLFLFLDTSK" gene 3942890..3947149 /locus_tag="TCM_043104" /note="dbxref CacaoGD:Thecc1EG043104" mRNA join(3942890..3943316,3944594..3944920,3945015..3945110, 3945230..3945322,3945425..3945510,3945666..3945929, 3946110..3946237,3946352..3946447,3946547..3946655, 3946777..3947149) /locus_tag="TCM_043104" /product="Serine carboxypeptidase-like 28" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043102t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04130.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc3724t1" CDS join(3943274..3943316,3944594..3944920,3945015..3945110, 3945230..3945322,3945425..3945510,3945666..3945929, 3946110..3946237,3946352..3946447,3946547..3946655, 3946777..3946929) /locus_tag="TCM_043104" /note="paralog of Thecc1EG043102t1" /codon_start=1 /product="Serine carboxypeptidase-like 28" /protein_id="EOY18600.1" /db_xref="Phytozome:POPTR_0008s04130.1" /db_xref="TAIR:AT2G35770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFB5" /translation="MGRESGSQSSDPRNFSSASAAGGNHRKEQERDRIVKLPGQPPKV NFSQYSGYITVDPKAGRALFYWLIKAPFKSQPASKPLVLWLNGGPGCSSVAYGASEEV GPFRVRSDGKTLRLNPYAWNQEANLLFLDSPAGVGFSYSNTSSDIYTVGDKRTAEDAY TFLIKWLERFPNYKHRPFYIAGESYAGHYIPELSQLIVRRNKGVKNPVLNFKGFLLGN PLLDDYYDNMGTHEYWWNHGLISDSTYNDLKKSCLNDTFLFPRDGCNNALNSAYGEIG DINLYNIYSPPCNGIATLKHNLGQIPLPWRFRGNDECVVMYTKKYMNNRRVQKALHAN LTRLPYRWATCSSIIRGNWTDSPKSMLPIIKELIAAGIRIWIFSGDTDAVLPLTATRY SIKALKLQTNISWYAWIDDQAEVGGWTEVYNGLTYVTVRGAGHEVPLTQPKRGLVLFR YFLRNLRLPASLSD" mobile_element complement(3945244..3945270) /note="source:INTACT563_F255_scaffold_10-int 8637 8663" /mobile_element_type="retrotransposon:LTR/Copia" gene 3950123..3952377 /locus_tag="TCM_043105" /note="dbxref CacaoGD:Thecc1EG043105" mRNA join(3950123..3950911,3951165..3951481,3951989..3952377) /locus_tag="TCM_043105" /product="Tetraspanin-31-A" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041101t1" /inference="similar to AA sequence:ricco:28540.m000037" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12354t00001" CDS join(3950420..3950911,3951165..3951481,3951989..3952028) /locus_tag="TCM_043105" /note="dbxref ricco:28540.m000037; paralog of Thecc1EG041101t1" /codon_start=1 /product="Tetraspanin-31-A" /protein_id="EOY18601.1" /db_xref="TAIR:AT3G12090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7C1" /translation="MYRFSNTVIGFLNLFTLLASIPIIGAGLWMAKSSTTCESFLQTP LLVLGFVILIISLAGFIGACFNVVWALWVYLLVMLFIIATLMGLTIFGFVVTSRGRGQ EVPGRVYREYRLEDYSPWLRNRIKDPRYWNTIRSCLLNSRTCAKVAFWTPLDYLNKDM TPVQSGCCKPPTSCDYNMVTMVAQNPDCYRWNNAPTMLCYECDSCKAGVLESVRRDWH KLSVLNIVMVLLLIGIYSIGCCAFQNTKRAETDYPYGQNRMSKVRPRWDYYWWRWWRD KREQLY" mobile_element complement(3952440..3952493) /note="source:scaffold_1_CACTA_0030 425 480" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3953117..3953214 /note="source:scaffold_3_CACTA_0378 2387 2482" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3953374..3953689) /note="source:CACAO_on_E86_scaffold_1 588 866" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(3954960..3956307) /note="source:CACAO_M_E4063_F12_scaffold_2 4908 6259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3956378..3956444) /note="source:CACAO_hAT_E1468_scaffold_3 1525 1588" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(3956445..3956635) /note="source:MITE_hAT_18 7 202" /mobile_element_type="transposon:TIR/MITE" gene 3961996..3967198 /locus_tag="TCM_043107" /note="dbxref CacaoGD:Thecc1EG043107" mRNA join(3961996..3962345,3962828..3962885,3962976..3963211, 3963395..3963511,3963602..3963662,3964179..3964267, 3964570..3964644,3964757..3964851,3964938..3964987, 3965233..3965273,3965364..3965537,3965650..3965685, 3965766..3965833,3965954..3966014,3966134..3967198) /locus_tag="TCM_043107" /product="Seven transmembrane MLO family protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G61560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041062t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04100.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2345t1" CDS join(3962220..3962345,3962828..3962885,3962976..3963211, 3963395..3963511,3963602..3963662,3964179..3964267, 3964570..3964644,3964757..3964851,3964938..3964987, 3965233..3965273,3965364..3965537,3965650..3965685, 3965766..3965833,3965954..3966014,3966134..3966571) /locus_tag="TCM_043107" /note="paralog of Thecc1EG041062t1" /codon_start=1 /product="Seven transmembrane MLO family protein" /protein_id="EOY18602.1" /db_xref="Phytozome:POPTR_0008s04100.1" /db_xref="TAIR:AT1G61560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KB7" /translation="MAETSNKARSLEYTPTWAVAVVCFVLVVISIIIEHAIHMVGKWL KKKHKPALYEALEKVKAELMLMGFISLLLTVAQGTISGFCIPESIANTWHPCGKKAET KKDSEKDSESTGRKLLEFSDVSTVARRSLASKEDTCPEGKVAFVSTYGIHQLHIFIFV LAISHILYCIITYALGRTKMRKWKAWEKETRTVEYQYYNDPERFRFARDTSFGRRHMN FWSRSTLSLWIVCFFRQFFGSVTKVDYLTLRHGFITAHLAPGNETKFDFQKYIKRSLE EDFKVVVGISPIIWFIAVLFLLAYTHGWYSYLWLPFLPLVIILMVGTKLQVIITKLGL RIQDRGDVVKGAPVVQPGDDLFWFGRPRFLLFLIHLVLFTNAFQLAFFVWSTYEFTIK SCYHEHLEDIIIRVSMGVIIQFLCSYVTLPLYALVTQMGTNMRPTIFNDRVAAALKSW HHTAKKHTKHSRHSENTTPFSSRPATPTHGMSPVHLLHNHPRSVESYHTSPRNSNLEN DQWDLDSPRRRAINDSVHDRQLEMREVDRTVQEYPSSSSHMPQPPQTLRTQHEIDISS SDFSFAKR" gene 3968341..3972244 /locus_tag="TCM_043108" /note="dbxref CacaoGD:Thecc1EG043108" mRNA join(3968341..3968600,3969173..3969200,3969541..3969651, 3970553..3970783,3971221..3971284,3971372..3971431, 3971833..3972244) /locus_tag="TCM_043108" /product="Ubiquitin-conjugating enzyme E2 C" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040797t2" /inference="similar to AA sequence:frave:gene23197" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12145t00001" CDS join(3968464..3968600,3969173..3969200,3969541..3969651, 3970553..3970783,3971221..3971284,3971372..3971431, 3971833..3971888) /locus_tag="TCM_043108" /note="dbxref frave:gene23197; paralog of Thecc1EG040797t2" /codon_start=1 /product="Ubiquitin-conjugating enzyme E2 C" /protein_id="EOY18603.1" /db_xref="TAIR:AT3G20060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BHQ5" /translation="MEDRPNRTVDNSSTSPQQHQSHAAAASSKQPVTAPDAVDTTSVT QRLQKELMALMGNGCDFVYGGDVWLPIRLCLGHSIISHLKFKSKVELVMTEGDLGVSA FPEGESIFAWIGTIEGGKGTMYEGLSYKISMRFPLDYPFKPPQVKFETMCFHPNVDQF GNICLDILQDKWSSAYDCRTILLSVQSLLGEPNPESPLNTYAAALLNNEEDYRKMVQE QYFGEKTSES" gene complement(3971370..3982846) /locus_tag="TCM_043109" /note="dbxref CacaoGD:Thecc1EG043109" mRNA complement(join(3971370..3971431,3971833..3971957, 3972380..3972762,3973348..3973482,3973566..3973658, 3974208..3974644,3974720..3975460,3976014..3976171, 3979567..3979605,3981229..3981851)) /locus_tag="TCM_043109" /product="RING/U-box domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22750.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22750.7" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc27t25; alternateUTRof:Thecc1EG043109t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2471t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc27t30_C1" mRNA complement(join(3971370..3972762,3973348..3973482, 3973566..3973658,3974208..3974644,3974720..3975460, 3976014..3976274)) /locus_tag="TCM_043109" /product="RING/U-box domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22750.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22750.7" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8084t8; alternateUTRof:Thecc1EG043109t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2471t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc27t30_C1" mRNA complement(join(3971743..3971957,3972601..3972762, 3973348..3973482,3973566..3973658,3974208..3974644, 3974720..3975460,3976014..3976171,3982730..3982846)) /locus_tag="TCM_043109" /product="RING/U-box domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22750.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22750.7" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:PASA:2:TSA:puevd3b041618t1a2; alternateUTRof:Thecc1EG043109t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2471t1" mRNA complement(join(3972261..3972762,3973348..3973482, 3973566..3973658,3974208..3974644,3974720..3975460, 3976014..3976171,3982730..3982846)) /locus_tag="TCM_043109" /product="RING/U-box domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22750.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22750.7" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b041618t1a3; alternateUTRof:Thecc1EG043109t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2471t1" mRNA complement(join(3972261..3972762,3973348..3973482, 3973566..3973658,3974208..3974644,3974720..3975460, 3976014..3976118,3979139..3979526,3980087..3980245, 3982730..3982846)) /locus_tag="TCM_043109" /product="RING/U-box domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22750.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22750.7" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2471t1" CDS complement(join(3972616..3972762,3973348..3973482, 3973566..3973658,3974208..3974644,3974720..3975460, 3976014..3976113)) /locus_tag="TCM_043109" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/U-box domain-containing protein, putative isoform 1" /protein_id="EOY18604.1" /db_xref="Phytozome:POPTR_0010s22750.7" /db_xref="TAIR:AT2G37150.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU54" /translation="MEHRQLTSAVPLFKIDQNHNQNSITAEQPYMHRGRAIAPENGSF VYPMENVPRSTPYSAIPQYIASRPLEHYSSNLRLGDSQVHAPHSCPSYDSFPHFPGVG SLYSTPVNDTSHSYSIHHDSFAVCEVGDGLLDCGMNIGRGLFKRKSRISLSCERGGTS RYYSAGSSSNSSEFHPDKQATDYPNYPSGTVGLSHYRGGNLSNGNENPPRNVRSRPRN DLEHNQRQIHPSSYSSHHYWPTAHQSSDSGRVNLTSLCAGATNYNQNNIGISYPTQGG FAISGNTGLRYETNQNFVGESTAGIGGHSHDSVSGRDPVSSAQYFPILHDQAAMGIHS NYSQSAVPSYGVDLRSSQWPQGVGLRSSWWPQETAPTENSLPSLTETYPSRYSRTFSA RSWRNRRDTRSRIAAERFQSFQNAENAHDRMGSEAQEDRSFLYGSRNSFDQYRDMRLD VDNMSYEELLALGERIGNVNTGLSEDVMSNCLKETIYSSYKNQHEATCAICLEEYKNG DGIGMMRCGHDYHLLCIKRWLAVKNACPICKAPALADGSKEE" CDS complement(join(3972616..3972762,3973348..3973482, 3973566..3973658,3974208..3974644,3974720..3975460, 3976014..3976113)) /locus_tag="TCM_043109" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RING/U-box domain-containing protein, putative isoform 1" /protein_id="EOY18605.1" /db_xref="Phytozome:POPTR_0010s22750.7" /db_xref="TAIR:AT2G37150.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU54" /translation="MEHRQLTSAVPLFKIDQNHNQNSITAEQPYMHRGRAIAPENGSF VYPMENVPRSTPYSAIPQYIASRPLEHYSSNLRLGDSQVHAPHSCPSYDSFPHFPGVG SLYSTPVNDTSHSYSIHHDSFAVCEVGDGLLDCGMNIGRGLFKRKSRISLSCERGGTS RYYSAGSSSNSSEFHPDKQATDYPNYPSGTVGLSHYRGGNLSNGNENPPRNVRSRPRN DLEHNQRQIHPSSYSSHHYWPTAHQSSDSGRVNLTSLCAGATNYNQNNIGISYPTQGG FAISGNTGLRYETNQNFVGESTAGIGGHSHDSVSGRDPVSSAQYFPILHDQAAMGIHS NYSQSAVPSYGVDLRSSQWPQGVGLRSSWWPQETAPTENSLPSLTETYPSRYSRTFSA RSWRNRRDTRSRIAAERFQSFQNAENAHDRMGSEAQEDRSFLYGSRNSFDQYRDMRLD VDNMSYEELLALGERIGNVNTGLSEDVMSNCLKETIYSSYKNQHEATCAICLEEYKNG DGIGMMRCGHDYHLLCIKRWLAVKNACPICKAPALADGSKEE" CDS complement(join(3972616..3972762,3973348..3973482, 3973566..3973658,3974208..3974644,3974720..3975460, 3976014..3976113)) /locus_tag="TCM_043109" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RING/U-box domain-containing protein, putative isoform 1" /protein_id="EOY18606.1" /db_xref="Phytozome:POPTR_0010s22750.7" /db_xref="TAIR:AT2G37150.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU54" /translation="MEHRQLTSAVPLFKIDQNHNQNSITAEQPYMHRGRAIAPENGSF VYPMENVPRSTPYSAIPQYIASRPLEHYSSNLRLGDSQVHAPHSCPSYDSFPHFPGVG SLYSTPVNDTSHSYSIHHDSFAVCEVGDGLLDCGMNIGRGLFKRKSRISLSCERGGTS RYYSAGSSSNSSEFHPDKQATDYPNYPSGTVGLSHYRGGNLSNGNENPPRNVRSRPRN DLEHNQRQIHPSSYSSHHYWPTAHQSSDSGRVNLTSLCAGATNYNQNNIGISYPTQGG FAISGNTGLRYETNQNFVGESTAGIGGHSHDSVSGRDPVSSAQYFPILHDQAAMGIHS NYSQSAVPSYGVDLRSSQWPQGVGLRSSWWPQETAPTENSLPSLTETYPSRYSRTFSA RSWRNRRDTRSRIAAERFQSFQNAENAHDRMGSEAQEDRSFLYGSRNSFDQYRDMRLD VDNMSYEELLALGERIGNVNTGLSEDVMSNCLKETIYSSYKNQHEATCAICLEEYKNG DGIGMMRCGHDYHLLCIKRWLAVKNACPICKAPALADGSKEE" CDS complement(join(3972616..3972762,3973348..3973482, 3973566..3973658,3974208..3974644,3974720..3975460, 3976014..3976113)) /locus_tag="TCM_043109" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RING/U-box domain-containing protein, putative isoform 1" /protein_id="EOY18607.1" /db_xref="Phytozome:POPTR_0010s22750.7" /db_xref="TAIR:AT2G37150.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU54" /translation="MEHRQLTSAVPLFKIDQNHNQNSITAEQPYMHRGRAIAPENGSF VYPMENVPRSTPYSAIPQYIASRPLEHYSSNLRLGDSQVHAPHSCPSYDSFPHFPGVG SLYSTPVNDTSHSYSIHHDSFAVCEVGDGLLDCGMNIGRGLFKRKSRISLSCERGGTS RYYSAGSSSNSSEFHPDKQATDYPNYPSGTVGLSHYRGGNLSNGNENPPRNVRSRPRN DLEHNQRQIHPSSYSSHHYWPTAHQSSDSGRVNLTSLCAGATNYNQNNIGISYPTQGG FAISGNTGLRYETNQNFVGESTAGIGGHSHDSVSGRDPVSSAQYFPILHDQAAMGIHS NYSQSAVPSYGVDLRSSQWPQGVGLRSSWWPQETAPTENSLPSLTETYPSRYSRTFSA RSWRNRRDTRSRIAAERFQSFQNAENAHDRMGSEAQEDRSFLYGSRNSFDQYRDMRLD VDNMSYEELLALGERIGNVNTGLSEDVMSNCLKETIYSSYKNQHEATCAICLEEYKNG DGIGMMRCGHDYHLLCIKRWLAVKNACPICKAPALADGSKEE" CDS complement(join(3972616..3972762,3973348..3973482, 3973566..3973658,3974208..3974644,3974720..3975460, 3976014..3976113)) /locus_tag="TCM_043109" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="RING/U-box domain-containing protein, putative isoform 1" /protein_id="EOY18608.1" /db_xref="Phytozome:POPTR_0010s22750.7" /db_xref="TAIR:AT2G37150.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HU54" /translation="MEHRQLTSAVPLFKIDQNHNQNSITAEQPYMHRGRAIAPENGSF VYPMENVPRSTPYSAIPQYIASRPLEHYSSNLRLGDSQVHAPHSCPSYDSFPHFPGVG SLYSTPVNDTSHSYSIHHDSFAVCEVGDGLLDCGMNIGRGLFKRKSRISLSCERGGTS RYYSAGSSSNSSEFHPDKQATDYPNYPSGTVGLSHYRGGNLSNGNENPPRNVRSRPRN DLEHNQRQIHPSSYSSHHYWPTAHQSSDSGRVNLTSLCAGATNYNQNNIGISYPTQGG FAISGNTGLRYETNQNFVGESTAGIGGHSHDSVSGRDPVSSAQYFPILHDQAAMGIHS NYSQSAVPSYGVDLRSSQWPQGVGLRSSWWPQETAPTENSLPSLTETYPSRYSRTFSA RSWRNRRDTRSRIAAERFQSFQNAENAHDRMGSEAQEDRSFLYGSRNSFDQYRDMRLD VDNMSYEELLALGERIGNVNTGLSEDVMSNCLKETIYSSYKNQHEATCAICLEEYKNG DGIGMMRCGHDYHLLCIKRWLAVKNACPICKAPALADGSKEE" mobile_element complement(3983179..3983409) /note="source:scaffold_9_CACTA_0942 5050 5364" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3983406..3983476 /note="source:scaffold_5_CACTA_0580 5294 5365" /mobile_element_type="transposon:TIR/CACTA" gene complement(3983979..3989831) /locus_tag="TCM_043112" /note="dbxref CacaoGD:Thecc1EG043112" mRNA complement(join(3983979..3984688,3984812..3984949, 3985040..3985242,3985339..3985444,3985783..3985949, 3986039..3986099,3987530..3987651,3989676..3989831)) /locus_tag="TCM_043112" /product="Rhomboid protein-related isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23195" /inference="similar to AA sequence:Phytozome:POPTR_0010s22770.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9218t3_C1" mRNA complement(join(3984031..3984688,3984812..3984949, 3985040..3985242,3985339..3985444,3985783..3985949, 3986039..3986099,3987530..3987651,3987756..3987822)) /locus_tag="TCM_043112" /product="Rhomboid protein-related isoform 2" /inference="alignment:exonerate-protein:2:frave:gene23195" /inference="similar to AA sequence:Phytozome:POPTR_0010s22770.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9218t3_C1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9218t3_C1" mRNA complement(join(3984042..3984688,3984812..3984949, 3985040..3985242,3985339..3985444,3985783..3985949, 3986039..3986102,3987530..3987651,3987756..3988031)) /locus_tag="TCM_043112" /product="Rhomboid protein-related isoform 3" /inference="similar to AA sequence:Phytozome:POPTR_0010s22770.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2445t1" CDS complement(join(3984586..3984688,3984812..3984949, 3985040..3985242,3985339..3985444,3985783..3985949, 3986039..3986099,3987530..3987651,3989676..3989777)) /locus_tag="TCM_043112" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Rhomboid protein-related isoform 1" /protein_id="EOY18609.1" /db_xref="Phytozome:POPTR_0010s22770.1" /db_xref="TAIR:AT3G07950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFB9" /translation="MQINSLFQALKDIRRRDFNTLSPAFLQPCLPYSEGGIFSGFTKL CKGLAVILIGGHILVQLLPSSVAYLALIPARTIPFGWNLITAGYIEQSVHGVVVSTLG LLFMGKLLEPVWGSKEFLKFIFVINFLTSVCVFITAIALYYITRQENYLYMPLSGFHG VLAGFLVGMKQIVPDQELSLLKIKVKWLPSLMLLLSIVISFFTPESATYLPTLIFGTY MGWIYLRFLQRKPEAKLRGDPSEDFSFSTFFPDFLRPIIDPIASIFHRMLCGKSEAST DAQGYTLGGAPLPGSDPIEATRRRERGARALEERLAAETLGVARNSEDSQKEGADNV" CDS complement(join(3984586..3984688,3984812..3984949, 3985040..3985242,3985339..3985444,3985783..3985949, 3986039..3986099,3987530..3987651,3987756..3987767)) /locus_tag="TCM_043112" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Rhomboid protein-related isoform 2" /protein_id="EOY18610.1" /db_xref="Phytozome:POPTR_0010s22770.1" /db_xref="TAIR:AT3G07950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFB9" /translation="MSSPGGIFSGFTKLCKGLAVILIGGHILVQLLPSSVAYLALIPA RTIPFGWNLITAGYIEQSVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFVINFLTSV CVFITAIALYYITRQENYLYMPLSGFHGVLAGFLVGMKQIVPDQELSLLKIKVKWLPS LMLLLSIVISFFTPESATYLPTLIFGTYMGWIYLRFLQRKPEAKLRGDPSEDFSFSTF FPDFLRPIIDPIASIFHRMLCGKSEASTDAQGYTLGGAPLPGSDPIEATRRRERGARA LEERLAAETLGVARNSEDSQKEGADNV" CDS complement(join(3984586..3984688,3984812..3984949, 3985040..3985242,3985339..3985444,3985783..3985949, 3986039..3986102,3987530..3987651,3987756..3987767)) /locus_tag="TCM_043112" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Rhomboid protein-related isoform 3" /protein_id="EOY18611.1" /db_xref="Phytozome:POPTR_0010s22770.1" /db_xref="TAIR:AT3G07950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFB9" /translation="MSSPGGIFSGFTKLCKGLAVILIGGHILVQLLPSSVAYLALIPA SRTIPFGWNLITAGYIEQSVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFVINFLTS VCVFITAIALYYITRQENYLYMPLSGFHGVLAGFLVGMKQIVPDQELSLLKIKVKWLP SLMLLLSIVISFFTPESATYLPTLIFGTYMGWIYLRFLQRKPEAKLRGDPSEDFSFST FFPDFLRPIIDPIASIFHRMLCGKSEASTDAQGYTLGGAPLPGSDPIEATRRRERGAR ALEERLAAETLGVARNSEDSQKEGADNV" gene complement(3985893..4000559) /locus_tag="TCM_043114" /note="dbxref CacaoGD:Thecc1EG043114" mRNA complement(join(3985893..3985949,3986039..3986099, 3987530..3987651,3987756..3987822,3989676..3990437, 3990770..3990923,3991667..3991737,3992245..3992357, 3993212..3993305,3994289..3994354,3994594..3994756, 3994848..3994954,3995660..3995860,3996291..3996416, 3996509..3996613,3997421..3997564,3998008..3998036)) /locus_tag="TCM_043114" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22780.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016296001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc182t15; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc182t15; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc181t30" misc_feature complement(join(3985921..3985949,3986039..3986296, 3986494..3987115)) /locus_tag="TCM_043112" /note="Gene fragment of Thecc1EG043112t1; dbxref gnl|CacaoGD|Thecc1EG043112t1; quality class is mediumpartial-partof is thecc1eg043112t1, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc844t2; dbxref CacaoGD:Thecc1EG043113t1" mRNA complement(join(3987627..3987651,3989676..3990437, 3990770..3990923,3991667..3991737,3992245..3992357, 3993212..3993305,3994289..3994354,3994594..3994756, 3994848..3994954,3995660..3995860,3996291..3996416, 3996509..3996613,3997421..3997564,3998008..3998060, 3998223..3998388,3999189..3999364,3999855..4000256)) /locus_tag="TCM_043114" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22780.1" /inference="similar to AA sequence:frave:gene23194" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc181t30; alternateUTRof:Thecc1EG043114t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc181t30; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc182t15" mRNA complement(join(3989437..3990437,3990770..3990923, 3991667..3991737,3992245..3992357,3993212..3993305, 3994289..3994354,3994594..3994756,3994848..3994954, 3995660..3995860,3996291..3996416,3996509..3996613, 3997421..3997564,3998008..3998060,3998223..3998388, 3999189..3999364,3999855..4000559)) /locus_tag="TCM_043114" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22780.1" /inference="similar to AA sequence:frave:gene23194" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc181t30" CDS complement(join(3989997..3990437,3990770..3990923, 3991667..3991737,3992245..3992357,3993212..3993305, 3994289..3994354,3994594..3994756,3994848..3994954, 3995660..3995860,3996291..3996416,3996509..3996613, 3997421..3997564,3998008..3998060,3998223..3998388, 3999189..3999364,3999855..4000212)) /locus_tag="TCM_043114" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene23194" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY18612.1" /db_xref="TAIR:AT2G39190.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80962" /translation="MALTTSLTAAVPLTAFRDNRGVVKTTTYRMKQRQRGKQQEQQRQ VQAVFGNFSHFGDAVRRDVEFLKKGVKRGAEWASETFRVPQVKKALDDVVWLRNLEDP HFSPPAQPPPWPQPYYPELSGLDLMMADLKALEAYVSYYYYQSKKWSKPLPEAYNAEE VVDYFSRRPHVVAFRLLEVFSSFASAAIRIRMSGIKKSLRPGSAKGIDENFAQYNFGM VLKETMLSLGPTFIKVGQSLSTRPDIIGPEISKALSELHDQIPPFPRPMAMKIIEEDL GSPVGSFFTYISKEPVAAASFGQVYRGCTLDGFDVAVKVQRPNLRHVVVRDIYILRLG LGLLQKIAKRKNDPRLYADELGKGLVGELDYTLEAANASEFLDAHSRFSFMQVPKVFK ELTRKRILTMEWMVGESPTDLLSGSTSNPINHGSKYLERQRVDAKRRLLDLVNKGVEA SLTQLLETGLLHADPHPGNLRYMASGQIGFLDFGLLCRMEKKHQFAMLASIVHIVNGD WSSLIEALTEMDVVRPGTNTRRITMDLEDALGEVEFKDGIPDVKFSRVLGKIWTVALK YHFRMPPYYTLVLRSLASLEGLAVAADPGFKTFEAAYPYVVRKLLTENSAATRKILHS VVLNKKKEFRWERMALFLRVGATRKTLQWVVASSGETSIDNLPNGTNGVFDVAYLLLR LLPSKDGVVLRRLIMTADGASLVRAVVSKEAKVFRFQLCRIIADILCQWMFESLGQIV PASQYSYHLRLAGGPENRELGPSSRLFTPTYDYQSLLKDRRLKVIFFKILNSARKEPA LMLRFYWTSFVMFIAASALAFHRLLISLSEAHLGTLPFAPKRFAMST" CDS complement(join(3989997..3990437,3990770..3990923, 3991667..3991737,3992245..3992357,3993212..3993305, 3994289..3994354,3994594..3994756,3994848..3994954, 3995660..3995860,3996291..3996416,3996509..3996613, 3997421..3997564,3998008..3998060,3998223..3998388, 3999189..3999364,3999855..4000212)) /locus_tag="TCM_043114" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene23194" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY18614.1" /db_xref="TAIR:AT2G39190.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80962" /translation="MALTTSLTAAVPLTAFRDNRGVVKTTTYRMKQRQRGKQQEQQRQ VQAVFGNFSHFGDAVRRDVEFLKKGVKRGAEWASETFRVPQVKKALDDVVWLRNLEDP HFSPPAQPPPWPQPYYPELSGLDLMMADLKALEAYVSYYYYQSKKWSKPLPEAYNAEE VVDYFSRRPHVVAFRLLEVFSSFASAAIRIRMSGIKKSLRPGSAKGIDENFAQYNFGM VLKETMLSLGPTFIKVGQSLSTRPDIIGPEISKALSELHDQIPPFPRPMAMKIIEEDL GSPVGSFFTYISKEPVAAASFGQVYRGCTLDGFDVAVKVQRPNLRHVVVRDIYILRLG LGLLQKIAKRKNDPRLYADELGKGLVGELDYTLEAANASEFLDAHSRFSFMQVPKVFK ELTRKRILTMEWMVGESPTDLLSGSTSNPINHGSKYLERQRVDAKRRLLDLVNKGVEA SLTQLLETGLLHADPHPGNLRYMASGQIGFLDFGLLCRMEKKHQFAMLASIVHIVNGD WSSLIEALTEMDVVRPGTNTRRITMDLEDALGEVEFKDGIPDVKFSRVLGKIWTVALK YHFRMPPYYTLVLRSLASLEGLAVAADPGFKTFEAAYPYVVRKLLTENSAATRKILHS VVLNKKKEFRWERMALFLRVGATRKTLQWVVASSGETSIDNLPNGTNGVFDVAYLLLR LLPSKDGVVLRRLIMTADGASLVRAVVSKEAKVFRFQLCRIIADILCQWMFESLGQIV PASQYSYHLRLAGGPENRELGPSSRLFTPTYDYQSLLKDRRLKVIFFKILNSARKEPA LMLRFYWTSFVMFIAASALAFHRLLISLSEAHLGTLPFAPKRFAMST" CDS complement(join(3989997..3990437,3990770..3990923, 3991667..3991737,3992245..3992357,3993212..3993305, 3994289..3994354,3994594..3994756,3994848..3994954, 3995660..3995860,3996291..3996416,3996509..3996613, 3997421..3997519)) /locus_tag="TCM_043114" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY18613.1" /db_xref="Phytozome:GSVIVT01016296001" /db_xref="TAIR:AT2G39190.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80962" /translation="MAMKIIEEDLGSPVGSFFTYISKEPVAAASFGQVYRGCTLDGFD VAVKVQRPNLRHVVVRDIYILRLGLGLLQKIAKRKNDPRLYADELGKGLVGELDYTLE AANASEFLDAHSRFSFMQVPKVFKELTRKRILTMEWMVGESPTDLLSGSTSNPINHGS KYLERQRVDAKRRLLDLVNKGVEASLTQLLETGLLHADPHPGNLRYMASGQIGFLDFG LLCRMEKKHQFAMLASIVHIVNGDWSSLIEALTEMDVVRPGTNTRRITMDLEDALGEV EFKDGIPDVKFSRVLGKIWTVALKYHFRMPPYYTLVLRSLASLEGLAVAADPGFKTFE AAYPYVVRKLLTENSAATRKILHSVVLNKKKEFRWERMALFLRVGATRKTLQWVVASS GETSIDNLPNGTNGVFDVAYLLLRLLPSKDGVVLRRLIMTADGASLVRAVVSKEAKVF RFQLCRIIADILCQWMFESLGQIVPASQYSYHLRLAGGPENRELGPSSRLFTPTYDYQ SLLKDRRLKVIFFKILNSARKEPALMLRFYWTSFVMFIAASALAFHRLLISLSEAHLG TLPFAPKRFAMST" mobile_element complement(3996111..3996173) /note="source:scaffold_10_CACTA_0137 6936 6997" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4008641..4008980) /note="source:INTACT59_F126_scaffold_9-int 2188 2530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4008978..4014554 /note="source:INTACT257_F186_scaffold_6-int 2674 8183" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4014559..4014589) /note="source:CACAO_M_S_E144426_F33_scaffold_10 9961 9991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4014564..4017450) /note="source:CACAO_M_S_E64023_F13_scaffold_5 19801 22686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4017445..4017716 /note="source:INTACT257_F186_scaffold_6-int 8175 8446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4018650..4025305 /note="source:INTACT622F_F362_scaffold_4-int 4628 11300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4025011..4026177) /note="source:INTACT464_F222_scaffold_9-int 12313 13472" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4026016..4029564 /locus_tag="TCM_043118" /note="dbxref CacaoGD:Thecc1EG043118" mRNA join(4026016..4026552,4026824..4027525,4027634..4027688, 4027779..4027828,4028732..4028844,4028968..4029564) /locus_tag="TCM_043118" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041648t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage" CDS join(4027384..4027525,4027634..4027688,4027779..4027828, 4028732..4028844,4028968..4029057) /locus_tag="TCM_043118" /note="paralog of Thecc1EG041648t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18615.1" /translation="MMRYGCLVVLEVMLISYATTFMLGKPMVVTCPSVSTLKIKSYQY FKRDTSIYCLSAISITTLCQSKKSQLPLEVCRRLFTFVGVTLVQLNKSYIDICKSTLI PLVEILEFSSMCKVLNDQGLFNLGQSRIDKSKRVTLQVDEAGISFAL" gene 4030516..4032138 /locus_tag="TCM_043119" /note="dbxref CacaoGD:Thecc1EG043119" mRNA join(4030516..4030910,4031002..4031104,4031351..4031639, 4031752..4032138) /locus_tag="TCM_043119" /product="Light-harvesting complex I protein Lhca1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23193" /inference="similar to AA sequence:frave:gene23193" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4237t1" CDS join(4030717..4030910,4031002..4031104,4031351..4031639, 4031752..4031903) /locus_tag="TCM_043119" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene23193" /codon_start=1 /product="Light-harvesting complex I protein Lhca1 isoform 1" /protein_id="EOY18616.1" /db_xref="TAIR:AT3G54890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLM2" /translation="MAANTLMSCGIATAFPSVLSSSKSKFAAAVQLPGVGANGSHRVS MSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGI LVPEALGYGNWVKAQEWAAIPGGQATYLGNPVPWGTLPIILVIEFFAIAFVEHQRSME KDTERKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSARPGTGP LENLATHLADPWHNNIGEIIIPRSISP" mRNA join(4030864..4030910,4031002..4031101,4031351..4031639, 4031752..4031820,4031841..4031969) /locus_tag="TCM_043119" /product="Light-harvesting complex I protein Lhca1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene23193" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042535t1" /inference="similar to AA sequence:Phytozome:Glyma16g26130.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc2739t11_G2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4237t1" CDS join(4030864..4030910,4031002..4031101,4031351..4031639, 4031752..4031820,4031841..4031848) /locus_tag="TCM_043119" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042535t1" /codon_start=1 /product="Light-harvesting complex I protein Lhca1 isoform 2" /protein_id="EOY18617.1" /db_xref="Phytozome:Glyma16g26130.2" /db_xref="TAIR:AT3G54890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLM2" /translation="MPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR WAMLAPGILVPEALGYGNWVKAQEWAAIPGGQATYLGNPVPWGTLPIILVIEFFAIAF VEHQRSMEKDTERKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQ SARPGTGPLS" gene complement(4032188..4032591) /locus_tag="TCM_043120" /note="dbxref CacaoGD:Thecc1EG043120" mRNA complement(4032188..4032591) /locus_tag="TCM_043120" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage" CDS complement(4032256..4032525) /locus_tag="TCM_043120" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18618.1" /translation="MELIRGKKMVPMAIVLALVIMTFMAAAPIPAEAVEIVIECSQPD CQNKCSAAYGSRLIRSACEKDPTIFGGTICVCYHTPPAASASTLP" gene complement(4033325..4036491) /locus_tag="TCM_043121" /note="dbxref CacaoGD:Thecc1EG043121" mRNA complement(join(4033325..4033659,4033775..4033908, 4034023..4034172,4034275..4034331,4034429..4035010, 4035391..4035763,4035862..4036491)) /locus_tag="TCM_043121" /product="Transferrin-like protein isoform 1" /inference="similar to AA sequence:ricco:28490.m000028" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08871t00001" mRNA complement(join(4033405..4033659,4033775..4033908, 4034023..4034172,4034275..4034336,4034429..4035010, 4035391..4035763,4035862..4035975)) /locus_tag="TCM_043121" /product="Transferrin-like protein isoform 2" /inference="similar to AA sequence:ricco:28490.m000028" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2386t1; inference alignment:Newbler:10:TSA:cgbaL_g08871t00001" CDS complement(join(4033559..4033659,4033775..4033908, 4034023..4034172,4034275..4034331,4034429..4035010, 4035391..4035763,4035862..4035928)) /locus_tag="TCM_043121" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28490.m000028" /codon_start=1 /product="Transferrin-like protein isoform 1" /protein_id="EOY18619.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T880" /translation="MEISTFLSISLLLFLLLLSPIHGFEPSPAPSFSSSLAPGSASSH TLAPDSGGTLATASDLSPPSPALSLPPSLAPAPMTAEKGRDADVAPAPEMEGSESFKG IDPSSQEVEEAGEQMVRWCTVREEYEDCQLLVSGLDQSNGYTWKCIQKETAQECLESI KRGEADLINLEAGVAYTAFINYSMKAIANEVYCDHARSYQAVAVVNRKACQGNKGISL MDFEGHKSCHGGYSTAAGWNYPINHIKESLDSQRMNDREIATGFFSKICAPSEFEGTG ICSGCGNENGSCHLNSPYSRDPGAFRCLVEELGDIAFLKADTVLLYSMEGPHNQSWSG KSVRDFMYLCPDGGCREINDYPGSCSFGAVPANVIMASNSLPNKERLFILQTLTNATS VEALQTAKYGASPLISPSTQEIAVVKKLTRSYLGMSATISQSILRLYTPNNQAAPSTE NPVSDVASQSSSCGQNSLVITLFSVLTMLLLVVCTPI" CDS complement(join(4034147..4034172,4034275..4034336, 4034429..4035010,4035391..4035763,4035862..4035928)) /locus_tag="TCM_043121" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28490.m000028" /codon_start=1 /product="Transferrin-like protein isoform 2" /protein_id="EOY18620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T880" /translation="MEISTFLSISLLLFLLLLSPIHGFEPSPAPSFSSSLAPGSASSH TLAPDSGGTLATASDLSPPSPALSLPPSLAPAPMTAEKGRDADVAPAPEMEGSESFKG IDPSSQEVEEAGEQMVRWCTVREEYEDCQLLVSGLDQSNGYTWKCIQKETAQECLESI KRGEADLINLEAGVAYTAFINYSMKAIANEVYCDHARSYQAVAVVNRKACQGNKGISL MDFEGHKSCHGGYSTAAGWNYPINHIKESLDSQRMNDREIATGFFSKICAPSEFEGTG ICSGCGNENGSCHLNSPYSRDPGAFRCLVEELGDIAFLKADTVLLYSMEGPHNQSWSG KSVRDFISGIFVLMGVAEKSMITLVLAHLELFLQM" mRNA complement(join(4034302..4034331,4034425..4035010, 4035391..4035763,4035862..4036020)) /locus_tag="TCM_043121" /product="Transferrin-like protein isoform 3" /inference="similar to AA sequence:ricco:28490.m000028" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc304t1; inference alignment:Newbler:10:TSA:cgbaL_g08871t00001" CDS complement(join(4034425..4035010,4035391..4035763, 4035862..4035928)) /locus_tag="TCM_043121" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28490.m000028" /codon_start=1 /product="Transferrin-like protein isoform 3" /protein_id="EOY18621.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T880" /translation="MEISTFLSISLLLFLLLLSPIHGFEPSPAPSFSSSLAPGSASSH TLAPDSGGTLATASDLSPPSPALSLPPSLAPAPMTAEKGRDADVAPAPEMEGSESFKG IDPSSQEVEEAGEQMVRWCTVREEYEDCQLLVSGLDQSNGYTWKCIQKETAQECLESI KRGEADLINLEAGVAYTAFINYSMKAIANEVYCDHARSYQAVAVVNRKACQGNKGISL MDFEGHKSCHGGYSTAAGWNYPINHIKESLDSQRMNDREIATGFFSKICAPSEFEGTG ICSGCGNENGSCHLNSPYSRDPGAFRCLVEELGDIAFLKADTVLLYSMEGPHNQSWSG KSVRDFM" gene 4038731..4059463 /locus_tag="TCM_043122" /note="dbxref CacaoGD:Thecc1EG043122" mRNA join(4038731..4041787,4059107..4059463) /locus_tag="TCM_043122" /product="CRINKLY4 related 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022140t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22800.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage" CDS 4039329..4041632 /locus_tag="TCM_043122" /note="paralog of Thecc1EG022140t1" /codon_start=1 /product="CRINKLY4 related 2" /protein_id="EOY18622.1" /db_xref="Phytozome:POPTR_0010s22800.1" /db_xref="TAIR:AT2G39180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80963" /translation="MPPQKCYFLTPISSLIFLFPLLFITASGYGSLGPIAAAFGENGF FCAIDAGGKQEIICWDKSNKTSSVPTFSFVPPMASLSGGEGFLCGISSNNSQAFCWDS LNFGINLVPQAYRYNSYLQIAAGKTHVCAIKGSYFSSTNDFGYVDCWEFHQTLDKNNV TMGFVSDHYVSNIVVKNIVSGDGFSCGVVKDSGVVFCWGPKSGNLGTFNVSGEFEVLA SGKSSVCGISKMSGEVECWGDSSEFGLPPRGIRFVSLSAGAQHFCGIQEDDHGVECWG KNINVSSVPKGSGFTAIASSDFTTCGVREVDLVLDCWGVQEQSLPDYSPPLQLCSPGV CSPGSCASGKFAFNASVLNEAELTSLCAQNELKMCLPCGTNCSHGYFPSSMCSANADR ICTPCSLCQNSSCWDVCGVPSSTKTQQQEQLEIKKLVIIIGSSISGCLLILVASCVFP RIIITKGEGKGIIQCSFCIGKPVVEADPDPNPLPPLSVTTYIGETQVYRLSELKDATH GFKEFSELGRGSFGFVYKAVLPDGRQVAVKRANAATIIHTNSRDFEAELEILCKVKHS NIVNLLGYCAEMGERLLVYEYMPHGTLHDHLHGDLSPLDWDLRLKIALQAARGLEYLH NEVTPPIVHRDVKTSNILLDSEWGARIADFGILSATDKDLSGDMANDVYNFGIVLLEI LSGRKAYDRDLTPPGTFEWALPLIRQGKAAATIDRSVPLPRNVEPLLKLADLAELSLR ENPSERPSMTNLASSLDQIVKCGLILS" mobile_element complement(4042517..4042575) /note="source:scaffold_3_CACTA_0382 1871 1929" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4042527..4042578 /note="source:CACAO_M_E5899_F5_scaffold_2 20738 20789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4042529..4042583) /note="source:INTACT296_F13_scaffold_9-int 13165 13224" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4052936..4059065 /locus_tag="TCM_043123" /note="dbxref CacaoGD:Thecc1EG043123" mRNA join(4052936..4053804,4058839..4059065) /locus_tag="TCM_043123" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2396t2" CDS join(4053529..4053804,4058839..4058856) /locus_tag="TCM_043123" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18623.1" /translation="MHTIFIYLYHAPCICLWHHHGIRVYMCLAPCMPFAEPTEHRWSP WMAYEEPCIYSMYIYLSMNIFLLQGFSLFFLFLWFHRLKGYQCNFLSKDAAGF" gene complement(4059120..4064001) /locus_tag="TCM_043124" /note="dbxref CacaoGD:Thecc1EG043124" mRNA complement(join(4059120..4059969,4061256..4061406, 4061797..4062034,4062272..4062482,4062985..4063100, 4063766..4064001)) /locus_tag="TCM_043124" /product="LRR receptor-like serine/threonine-protein kinase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022138t1" /inference="similar to AA sequence:ricco:28327.m000353" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc15158t1" CDS complement(join(4059661..4059969,4061256..4061406, 4061797..4062034,4062272..4062482,4062985..4063100, 4063766..4063850)) /locus_tag="TCM_043124" /note="dbxref ricco:28327.m000353; paralog of Thecc1EG022138t1" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase" /protein_id="EOY18624.1" /db_xref="TAIR:AT1G16670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0H9" /translation="MNFCISSLNCFSFSSSSSSKSFSNHNEQDSQTLRNLHAFLYDEL KIATDGFRSSNKIGEGGFGSVYKGRLKDGRTVAVKVLSAESKQGDREFMSEIVSLSNI SHANLVKLHGGCIDGPSRILVYEYMENNSLAQVLLGGEKNRANLSWKSRKEIALGIAQ ALAYIHEEVKPHIVHRDIKLSNILLDQNFTPKVSDFGLSRLFSENVTHLSTGVAGTFG YLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRTAIDFDVELGEFFLVEKAWEMCKSNE LLQLVDPVLKGSISSEQEVVHFLKVGLLCVQEKCGLRPYMSKAIKMMCDGIDMDDLQI SKPGLITNIMDVKIGNRRSSSPSYTRMLSPRLHTR" mobile_element 4060361..4060409 /note="source:CACAO_M_S_E122136_F76_scaffold_10 13665 13713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4060841..4060885) /note="source:scaffold_5_CACTA_0610 5706 5749" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4070994..4071230 /note="source:CACAO_M_S_E52027_F3_scaffold_5 4423 4659" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4071231..4071659) /note="source:CACAO_M_E44150_F74_scaffold_5 4154 4595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4071660..4071728 /note="source:CACAO_on_SS_E90_scaffold_6 3784 3851" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4071734..4073558 /note="source:INTACT659F_F82_scaffold_5-int 3984 5808" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4073451..4075609) /locus_tag="TCM_043125" /note="dbxref CacaoGD:Thecc1EG043125" mRNA complement(join(4073451..4073884,4074094..4074725, 4075592..4075609)) /locus_tag="TCM_043125" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040581t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is weak, protein is utrpoor_complete" mobile_element complement(4073547..4075616) /note="source:INTACT759_F323_scaffold_6-int 1933 4029" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(4073696..4073884,4074094..4074231)) /locus_tag="TCM_043125" /note="paralog of Thecc1EG040581t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18625.1" /translation="MRKLMLSLAGFRSAFGVISAYRDVATVVTGPMGVSGRDNLDWYQ SMVLRCTSDIHTMSRRCDSLDTSHSDSEGSLDSTARSKWYPDIGDSEGGPFRIPNNRI PLNLAE" mobile_element 4073975..4075623 /note="source:scaffold_4_CACTA_0503 3097 4747" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4075623..4075943) /note="source:CACAO_on_SS_E90_scaffold_6 3579 3899" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4075814..4075959 /note="source:INTACT465_F78_scaffold_6-int 13057 13200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4075922..4077330) /note="source:INTACT36_F116_scaffold_6-int 3460 4865" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4075941..4077522 /note="source:INTACT89_F140_scaffold_9-int 14455 16058" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4077381..4080851 /locus_tag="TCM_043126" /note="dbxref CacaoGD:Thecc1EG043126" mRNA join(4077381..4077976,4079774..4080014,4080174..4080851) /locus_tag="TCM_043126" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.13 coverage" mobile_element complement(4077837..4077973) /note="source:INTACT59_F126_scaffold_9-int 14710 14834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4077852..4078202 /note="source:INTACT89_F140_scaffold_9-int 2002 2358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4077934..4078205) /note="source:INTACT36_F116_scaffold_6-int 2659 2911" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(4079856..4080014,4080174..4080275) /locus_tag="TCM_043126" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18626.1" /translation="MGKLVKARVKIVTEANKLANPSHKVDMLPALSIFDLFVFSSYAG LPWELEIGKAASPPPPSNPLFSNLSFLLKHSPHEDQATTSAN" gene 4080157..4091196 /locus_tag="TCM_043127" /note="dbxref CacaoGD:Thecc1EG043127" mRNA join(4080157..4080368,4081243..4081744,4082364..4082495, 4082889..4082956,4083342..4083406,4083717..4083783, 4084596..4084880,4084976..4085102,4085511..4085836, 4086559..4086638,4086880..4086982,4088399..4088481, 4088797..4089414,4090309..4091196) /locus_tag="TCM_043127" /product="P-aminobenzoate synthase" /inference="alignment:exonerate- protein:2:ricco:28327.m000357" /inference="similar to AA sequence:Phytozome:GSVIVT01016291001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2411t1" CDS join(4081417..4081744,4082364..4082495,4082889..4082956, 4083342..4083406,4083717..4083783,4084596..4084880, 4084976..4085102,4085511..4085836,4086559..4086638, 4086880..4086982,4088399..4088481,4088797..4089414, 4090309..4090789) /locus_tag="TCM_043127" /codon_start=1 /product="P-aminobenzoate synthase" /protein_id="EOY18627.1" /db_xref="Phytozome:GSVIVT01016291001" /db_xref="TAIR:AT2G28880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUE3" /translation="MSFTLCSSSELTYPYVEGLRNARANRVASKSFIMAGGCIKKHYV QASYPDARKVVISSHLVPGHLEGSFMGKKWQEEPRKKLEFVRTLLIDNYDSYTYNIYQ ELSVINGLPPVVVRNDEYTWKDICHFLYEEGAFDNIVISPGPGSPTCPADIGVCLQLL LQCWDIPILGVCLGHQALGYAHGAQIIHASEPIHGRLSEIEHNGCKLFANIPSGRNSG FKVVRYHSLVIDAKTLPKELIPIAWTSSDDTLSFLETQKFDVISDVYESERQQENFDS ILERLKNGSYWSSSHANGTKSGKVVMGIRHATWPHYGVQFHPESVATTYGRQIFKNFR EMTKDYWLRMCSSFSSDRNIHYTASMQLPHASRLFRAVHTGGQSAKKADVRFYGEACS SGQLMQDADKRNFGFLHMANVLPPSMGANFLKLKWRKFDHLASEVGGARNIFSELFGK NKAENTFWLDSSSTEKGRARFSFMGGKGGSLWKQLTFRLSEDSEVASKRGGHLLIEDA DGSTNSTFLEEGFFEYLNKELLSLRHEEKDYEGLPFEFYGGFIGYIGYNLKVECGAAS NYHKSTTPDACFFFADNLVVVDHHSDDVYILSLHEGNTTMTPWLEDTGKKLVSLKASV TRKLDEQNVQAVTSSQHKQGFHSEKSREQYVRDVEKCLQYIKDGESYELCLTTCIRKT IGQADPLRLYLHLREKNPAPYAAWLNFSKQNLSICSSSPERFLRLDRNGTLEAKPIKG TIARGATLEEDEQLKLQLQHSEKDQAENLMIVDLLRNDLGRVCEPGTVHVPHLMEVES YATVHTMVSTIRGKKQSNVSAVACVKAAFPGGSMTGAPKLRSMELLDSIESCSRGIYS GSIGFFSYNQTFDLNIVIRTVVIHENEASIGAGGAIVALSDPEKEYDEMILKTRAPAN AVMEFQ" gene 4092686..4098825 /locus_tag="TCM_043128" /note="dbxref CacaoGD:Thecc1EG043128" mRNA join(4092686..4092929,4093652..4093841,4094092..4094168, 4094288..4094346,4094797..4094880,4094984..4095076, 4095461..4095541,4095781..4095912,4096094..4096196, 4096371..4096465,4096631..4096696,4097232..4097316, 4097594..4098236) /locus_tag="TCM_043128" /product="Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyas, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:28327.m000358" /inference="similar to AA sequence:ricco:28327.m000358" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04246t00001" CDS join(4092797..4092929,4093652..4093841,4094092..4094168, 4094288..4094346,4094797..4094880,4094984..4095076, 4095461..4095541,4095781..4095912,4096094..4096196, 4096371..4096465,4096631..4096696,4097232..4097316, 4097594..4097742) /locus_tag="TCM_043128" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28327.m000358" /codon_start=1 /product="Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyas, putative isoform 1" /protein_id="EOY18628.1" /db_xref="TAIR:AT1G48850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P57720" /translation="MASSISPKPFLGATKPNPSLSSDLQRLSFSSLHISVKPRTHKKL LELLNSDKVCCITEIQAAGSTFGNYFRVTTFGESHGGGVGCIVDGCPPRIPLSEADLQ FDLDRRRPGQSRITTPRKETDTCRIYSGVSEGVTTGTPIHVFVPNTDQRGHDYNEMSI AYRPSHADATYDMKYGVRAVKGGGRSSARETIGRVAPGAIAKKILQQFSGTEVLAYVS QVHQVVLPDGSVDHDTLTLDQVESNIVRCPNPEYAEKMIAAIDAVRTRGDSIGGVVTC IVRNAPRGLGSPVFDKLEAELAKAVMSLPATKGFEFGSGFAGTFLTGSEHNDEFFTDE HGKIRTRTNRSGGIQGGISNGEIMNMRVAFKPTATIGKKQNTVTREKKEIELIARGRH DPCVVPRAVPMVEAMVALVLVDQLMAQYAQCNLFPINPELQEPLSLNFPNFEPANI" mRNA join(<4093738..4093841,4094092..4094168,4094288..4094346, 4094797..4094880,4094984..4095076,4095461..4095541, 4095781..4095912,4096094..4096196,4096371..4096465, 4096631..4096696,4097232..4097316,4097594..4097780, 4098287..4098825) /locus_tag="TCM_043128" /product="Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyas, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:28327.m000358" /inference="similar to AA sequence:ricco:28327.m000358" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc242t10; inference alignment:Newbler:10:TSA:cgbaL_g04246t00001" mRNA join(<4093738..4093841,4094092..4094168,4094288..4094346, 4094797..4094880,4094984..4095076,4095461..4095541, 4095781..4095912,4096094..4096196,4096371..4096465, 4096631..4096696,4097241..4097316,4097594..4097780, 4098287..4098825) /locus_tag="TCM_043128" /product="Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyas, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:28327.m000358" /inference="similar to AA sequence:TAIR:AT1G48850.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc246t6; inference alignment:Newbler:10:TSA:cgbaL_g04246t00001" CDS join(<4093738..4093841,4094092..4094168,4094288..4094346, 4094797..4094880,4094984..4095076,4095461..4095541, 4095781..4095912,4096094..4096196,4096371..4096465, 4096631..4096696,4097232..4097316,4097594..4097742) /locus_tag="TCM_043128" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28327.m000358" /codon_start=1 /product="Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyas, putative isoform 2" /protein_id="EOY18629.1" /db_xref="TAIR:AT1G48850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P57720" /translation="TFGESHGGGVGCIVDGCPPRIPLSEADLQFDLDRRRPGQSRITT PRKETDTCRIYSGVSEGVTTGTPIHVFVPNTDQRGHDYNEMSIAYRPSHADATYDMKY GVRAVKGGGRSSARETIGRVAPGAIAKKILQQFSGTEVLAYVSQVHQVVLPDGSVDHD TLTLDQVESNIVRCPNPEYAEKMIAAIDAVRTRGDSIGGVVTCIVRNAPRGLGSPVFD KLEAELAKAVMSLPATKGFEFGSGFAGTFLTGSEHNDEFFTDEHGKIRTRTNRSGGIQ GGISNGEIMNMRVAFKPTATIGKKQNTVTREKKEIELIARGRHDPCVVPRAVPMVEAM VALVLVDQLMAQYAQCNLFPINPELQEPLSLNFPNFEPANI" CDS join(<4093738..4093841,4094092..4094168,4094288..4094346, 4094797..4094880,4094984..4095076,4095461..4095541, 4095781..4095912,4096094..4096196,4096371..4096465, 4096631..4096696,4097241..4097316,4097594..4097742) /locus_tag="TCM_043128" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyas, putative isoform 3" /protein_id="EOY18630.1" /db_xref="TAIR:AT1G48850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P57720" /translation="TFGESHGGGVGCIVDGCPPRIPLSEADLQFDLDRRRPGQSRITT PRKETDTCRIYSGVSEGVTTGTPIHVFVPNTDQRGHDYNEMSIAYRPSHADATYDMKY GVRAVKGGGRSSARETIGRVAPGAIAKKILQQFSGTEVLAYVSQVHQVVLPDGSVDHD TLTLDQVESNIVRCPNPEYAEKMIAAIDAVRTRGDSIGGVVTCIVRNAPRGLGSPVFD KLEAELAKAVMSLPATKGFEFGSGFAGTFLTGSEHNDEFFTDEHGKIRTRTNRSGGIQ GGISNGEIMNMRVAFKPTATIGNTVTREKKEIELIARGRHDPCVVPRAVPMVEAMVAL VLVDQLMAQYAQCNLFPINPELQEPLSLNFPNFEPANI" gene complement(4104987..4110918) /locus_tag="TCM_043130" /note="dbxref CacaoGD:Thecc1EG043130" mRNA complement(join(4104987..4105300,4106980..4107313, 4109057..4110422,4110508..4110918)) /locus_tag="TCM_043130" /product="PATATIN-like protein 6, IIB" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s04030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027086t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s04030.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2467t2" CDS complement(join(4107044..4107313,4109057..4110169)) /locus_tag="TCM_043130" /note="paralog of Thecc1EG027086t1" /codon_start=1 /product="PATATIN-like protein 6, IIB" /protein_id="EOY18631.1" /db_xref="Phytozome:POPTR_0008s04030.1" /db_xref="TAIR:AT2G39220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SZQ3" /translation="MSSNTSSEMQEPSIDTDKLSYEIFSILESKFLFGYDDHQKLWIP KPISPASEQKVEPLVQQGDENSQSAIKNQRGKICIMSIDSGGMRGILCGKALAYLEHA LKSKSGNPNARIADFFDVAAGSGVGGIFTAMLFGTKDNNRPIYTAEETWRFLADNGKR IYRSGSGKNGGILKKILKNGSTGSCSTGLEKAMKEAFAADGRSLTLKDTLKPVLIPCY DLSSTAPFLFSRADALETDSFDFPLWEVCRATSAEPGLFDPVLMRSVDGETRCVAVDG GLAMSNPTAAAITHVLHNKQEFPFVRGVEDLLVLSLGTGQLLEVSYEYEQVKNWRVKD WAKPMARISGDGSADSVDQAVAMAFGQCRSSNYVRIQANGSSLGRCGPNVDTDPSPSN VTMLIGIAEEMLKQKNVESVLFGGKRIGEQSNFEKLDWFAGELVLEHQRRSCRIAPTV AFKQATPKTN" gene 4115052..4117680 /locus_tag="TCM_043131" /note="dbxref CacaoGD:Thecc1EG043131" mRNA join(4115052..4115234,4115324..4115543,4115652..4116042, 4116163..4116300,4116397..4116556,4116644..4116788, 4116953..4117126,4117214..4117680) /locus_tag="TCM_043131" /product="Tryptophan/tyrosine permease" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22870.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016284001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10021t10" CDS join(4115083..4115234,4115324..4115543,4115652..4116042, 4116163..4116300,4116397..4116556,4116644..4116788, 4116953..4117126,4117214..4117408) /locus_tag="TCM_043131" /codon_start=1 /product="Tryptophan/tyrosine permease" /protein_id="EOY18632.1" /db_xref="Phytozome:GSVIVT01016284001" /db_xref="TAIR:AT5G19500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNH1" /translation="MVFTLLSSMDRKCMPSSSSLTPKTHIKNANIIPKWALIHQRKNR VCLKFRINKYPCGCQWKQKGKTWRTQRIYVTKEGENLIRVKKDPVKGDGIKGTIAGAV ALIIGTSIGSGILALPQKASPAGVLPSSISLIICWAFLLIEALLLIEINVGLRRKKGK KEEESEFEVISIRTMAQETLGDWGGTLATVIYVFLGYTSMIAYSSKSGEILFHLINLP ESVSGFLFTGIFTMLISVGGTQATDQVNQWLTISTIGLLIAIEALAVVFGGWSGLEGS GDWGKVPATIPVMIFSLVYHDIAPVLCAYLGSDLTRLRVSVLLGSVVPLLALLVWDAI ALGLSAQADQIVDPVELLMRVKWSGVSFMVEAFSLLAVGTSMIGTLLGFSEFFKEQLK NLSWHSSSMQIAPLTPDDLQQKPDKPSGLTNWWGRNKTSFTAMAMVVTPTLLVSTTVP DAFSAATDIAGGYCMTLLYGVLPPAMAWAMQNREGEDSHQKALTRPKPALFGVGLFAC AIVVEQILQDFLALHF" gene complement(4118014..4120558) /locus_tag="TCM_043133" /note="dbxref CacaoGD:Thecc1EG043133" mRNA complement(join(4118014..4118188,4118565..4118665, 4119187..4119300,4120548..4120558)) /locus_tag="TCM_043133" /product="Vacuolar membrane ATPase 10" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22880.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022151t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22880.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4246t3" CDS complement(join(4118045..4118188,4118565..4118665, 4119187..4119274)) /locus_tag="TCM_043133" /note="paralog of Thecc1EG022151t1" /codon_start=1 /product="Vacuolar membrane ATPase 10" /protein_id="EOY18633.1" /db_xref="Phytozome:POPTR_0010s22880.2" /db_xref="TAIR:AT3G01390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O82628" /translation="MEASRGQNGIQQLLAAEQEAQHIVNIARNAKMARLKQAKEEAEK EITEFRAQVEYEFQKKVAESSGDSGANVKRLELETDAKINHLKNEAARISQDVVQMLL KHVTTVRN" mobile_element complement(4121576..4121686) /note="source:scaffold_5_CACTA_0612 13207 13319" /mobile_element_type="transposon:TIR/CACTA" gene complement(4122270..4124908) /locus_tag="TCM_046956" /note="dbxref CacaoGD:Thecc1EG046956" mRNA complement(4122270..4124908) /locus_tag="TCM_046956" /product="Cullin 1" /inference="alignment:exonerate-protein:2:frave:gene24917" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004565t1" /inference="similar to AA sequence:TAIR:AT4G02570.4" /note="quality class is strong-expertchoice, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(4122506..4124725) /locus_tag="TCM_046956" /note="paralog of Thecc1EG004565t1" /codon_start=1 /product="Cullin 1" /protein_id="EOY18634.1" /db_xref="TAIR:AT4G02570.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AH6" /translation="MNRKIIGLEEGLGYMQDGITKIERILEGRPEPPFNSEEYMKLYT TIYNMCLQTPPDDHTQQLYDKYRQAIQGYITSTVLPSIRAKHDEFMLKELVKRWANHK VMLRWLSHLFYYLDRHLIACRSLPSLKEVGLLYFRDLVYRDVHVKVRDAVITLIDKER EGEQVDRALLKNVLDFFVEIGMGQMNRYEEDFEAHMLQDTGAYYSRKASNWILEDSCP DYMLKSEECLKKERDRVGHYLHSSSETKLSERAQHELLVTHVNQLLDKEHSGCRVLLR DDKVEDLSRMYRLYSKIPLGLKLVADIFKQHITAEGIALVQQAEDAASSKASNAAAGV QEQVLIRKIIELHDKYVEYVTDCFENHALFHKALEEAFEVVCNETVAGSSSAELLTTF CDNVLKKSGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKTLARRLLFDRSAND DRERSILTKLKQQRGGQFTSKMEGMVTDLTLARENQANFEDYLRSNSAARPGIDLTVT VLTTGFWPSYKSSDLNLPAEMVKCVEVFKGFYETKTKHRKLTWIYSLGTCHISGKFEQ KTIELIVSTYQAAVLLLFNASDRLSYSEIMAQLNLTHDDLVRLLHSLSCAKYQILSKE PNTKTISQSDYFEFNSKFTDKLRRIKIPLPPVDERKQVVDDVGKQRRYAIDAAIVRVM KSRKVLGYQQLVSECVEQLSRMFKPDIKAIKKQIEDLITQEYLERDKENANMFKYLA" mobile_element 4124930..4125007 /note="source:scaffold_3_CACTA_0377 3136 3215" /mobile_element_type="transposon:TIR/CACTA" gene complement(4124955..4129538) /locus_tag="TCM_043135" /note="dbxref CacaoGD:Thecc1EG043135" mRNA complement(join(4124955..4125028,4126255..4126719, 4126885..4126953,4127111..4127197,4128076..4128156, 4128240..4128375,4129024..4129538)) /locus_tag="TCM_043135" /product="Disulfide isomerase-like protein" /inference="similar to AA sequence:ricco:28327.m000369" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc2891t1" mobile_element complement(4125545..4126514) /note="source:INTACT639F_F363_scaffold_5-int 7467 8455" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(4126594..4126719,4126885..4126953, 4127111..4127197,4128076..4128156,4128240..4128375, 4129024..4129481)) /locus_tag="TCM_043135" /note="dbxref ricco:28327.m000369" /codon_start=1 /product="Disulfide isomerase-like protein" /protein_id="EOY18635.1" /db_xref="TAIR:AT5G60640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUB3" /translation="MSTTRFILLLIPLVIFHGDLQQVAAAFSSKAASHEEIIDFTDFT TQDLHVSKPPVVHGEKDVVVLTGKNFSSFIAENKYVMVLFYATWCGWSQKMVPEFEAA ATLLKGDQVAFAKVDATRESELAVKYKVSGYPTVFLLAGRVCKPYDSKRTRNEIVSWV RSNIRVLNVTANDDAEPIFVTTFTEERAPLIFQNSLKQLWLFDTKSGSKEVKSAFEEA SKALGQELLFVYAEISDDDMGRRLAAHFELTGDTPRIIARSRHGNKYVFNGDITASTI KSFGEDFLDGKLPYASNLIPEQILRLHTPSHASDPTSFPHIA" gene complement(4129585..4134208) /locus_tag="TCM_043136" /note="dbxref CacaoGD:Thecc1EG043136" mRNA complement(join(4129585..4130108,4130200..4130301, 4130381..4130507,4130994..4134208)) /locus_tag="TCM_043136" /product="WPP domain-associated protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22900.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s22900.1" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS complement(join(4130058..4130108,4130200..4130301, 4130381..4130507,4130994..4133926)) /locus_tag="TCM_043136" /codon_start=1 /product="WPP domain-associated protein, putative" /protein_id="EOY18636.1" /db_xref="Phytozome:POPTR_0010s22900.1" /translation="MGSSIKTLHVSKFYLDGYRSNKGVSLLDIEILMEHIFNLIDMRS TNSRIKVSITESTMMQIVHSAMDKAYRKVRSKNGVLERLNEISKFYELSVMQLEGCLK FVQEETDNCVLESCHQVLLEDLTEIRDRLQGRLKEVELAISEKDKELLEILANELKLR KALEMNEKELDSLHADLKLEKRKSEGIEEFILSGQANTDGDREGKFCELKSSVDQQVW NIQQQLEPNYQLRDEERSQGIDNRKIEQMGSDISILKETLDVAFCKMQNAIFLSELGP IEHQWTWDIERGTAAIVIKGSLKDFRENFEEEVKKREMQVSVGLRKHLSDVMREMTCL SHELELFSNQDEVQVKSSKAKDSLKAKGRCLSEGHSFGNSSNFLLKVEEASTMGQPCK EDSENDGGHYVAKMIKNHESIIRRKNEELNSLKREILRERGFASLGREKGSVNPKRRI QEVIMSLESLINWNPWLRDIFSDCTCDNEVETLPEVRLSAGDQLGIEKSGIESMEEVW ANVKKTSVSQPGNEEPCSEVRIMKQELKDANLQTMMMEEIYLTIFKSLVEEFHIEMLN HQLQCLVKEGMYERFIEEMKNERNEKTGSDRIEVQSREEKYDSLFRKAVTDLDSSHNS RAACYQNAKAESNCLEDQNFSGFGNLEDMVKEDVYTFLLQEILREWNENKESYKSKCA LGEELCFIVFGETVRDIMNTANYALSKLKEIKAHDSFNYDFQFSNKFFESAAMSIKDD VWKVFLAEMIKEWKMKIDAFSTESLIREEVLQFLVAKAVKEACIMEAADDQNEERDPN NLLPVNKLWTSLDENGKENLMQTLDRLVKFLEEEEALILSACSEMKEQKRHLDLVRSV FDELDGHEHFQGLFTNEQNSTKSANSKLEKALQHLDFGKAILSELGSRIGITVGNLEW LHSEMTALVDTTHCKNPSIYQAKDVEEAKINIYESLLNPIQELSQILKGFECSSCTRL GRHIFRLEELKHQLDLLVERTASLSQKESLYRKAFIRRCENLQMAETEVDLLGDQVDL LLGLLEKIYVTMHRHSPVLQQFFEVSEMLKLIEKEIGGRR" gene complement(4135084..4136668) /locus_tag="TCM_043137" /note="dbxref CacaoGD:Thecc1EG043137" mRNA complement(4135084..4136668) /locus_tag="TCM_043137" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G19290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029939t1" /inference="similar to AA sequence:TAIR:AT5G19290.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2634t1" CDS complement(4135553..4136572) /locus_tag="TCM_043137" /note="paralog of Thecc1EG029939t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY18637.1" /db_xref="TAIR:AT5G19290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZV6" /translation="MARHPVAEADEKSPFGTLTPDEFYARHSVSHSSEFFTNARGLKL FTQWWTPLNTPISGIVAVVHGFTGESSWLLQLTSVLFAKSGFAACAIDHQGHGFSEGL DGLEAHIPSIDGVVDDCIQFFDAYRARHAADLPAFLYAESLGGAIALYISLRQKGAWD GLILNGAMCGISAKFKPPWPLEHFLFIAAKLMPTWRVVPTRGSLPEVSFKEPWKRKLA IASPRRTVARPRAATAYELIRICNDLQGKFEEVDVPLLIVHGGDDVVCDPACIEELYK RAASVDKTLKIYPEMWHQLIGEPEEGVELVFGEMVEWLKSRASQTAEANGDGSARAAV GSVSA" mobile_element complement(4136755..4137949) /note="source:CACAO_on_E683_scaffold_9 1316 2299" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4137681..4138084 /note="source:INTACT639F_F363_scaffold_5-int 8171 8573" /mobile_element_type="retrotransposon:LTR/Copia" gene 4139713..4141136 /locus_tag="TCM_043138" /note="dbxref CacaoGD:Thecc1EG043138" mRNA join(4139713..4140371,4140944..4141136) /locus_tag="TCM_043138" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc656t2" CDS join(4140080..4140371,4140944..4140966) /locus_tag="TCM_043138" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18638.1" /translation="MAKKSTNKVLHLSFIKRGVGGCYFISRGSWQSPNQHFLLLHFHH LLVGTHFLLCPHGKALSLTIKSFNTLEIFAAKGPWRAWHCRNSVVARFIVTSARTICK GT" gene complement(4140965..4143804) /locus_tag="TCM_046957" /note="dbxref CacaoGD:Thecc1EG046957" mRNA complement(join(4140965..4141305,4143495..4143804)) /locus_tag="TCM_046957" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22920.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03970.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2457t1" CDS complement(join(4141280..4141305,4143495..4143759)) /locus_tag="TCM_046957" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18639.1" /db_xref="Phytozome:POPTR_0008s03970.1" /translation="MHLWPSVRIRDSFKAAYLRKLEWNLHRMKSEKRSSSSPRTPSNQ QKLLNEKEAADSASASSGCSASFIVICREISMVLSCCYCCFCCGACVDHEEN" mobile_element 4146137..4146172 /note="source:CACAO_Again_on_S_E155_scaffold_4 1 36" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(4146176..4146487) /note="source:CACAO_on_E26_scaffold_4 91 394" /mobile_element_type="transposon:TIR/hAT" mobile_element 4146273..4146523 /note="source:scaffold_5_CACTA_0607 9870 10124" /mobile_element_type="transposon:TIR/CACTA" gene complement(4147687..4150148) /locus_tag="TCM_046958" /note="dbxref CacaoGD:Thecc1EG046958" mRNA complement(join(4147687..4147848,4147941..4148081, 4148942..4149237,4149738..4150148)) /locus_tag="TCM_046958" /product="Plasma membrane intrinsic protein 2A" /inference="alignment:exonerate- protein:2:ricco:27516.m000174" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022154t1" /inference="similar to AA sequence:Phytozome:Glyma02g08110.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4450t1" CDS complement(join(4147729..4147848,4147941..4148081, 4148942..4149237,4149738..4150026)) /locus_tag="TCM_046958" /note="paralog of Thecc1EG022154t1" /codon_start=1 /product="Plasma membrane intrinsic protein 2A" /protein_id="EOY18640.1" /db_xref="Phytozome:Glyma02g08110.1" /db_xref="TAIR:AT3G53420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P43286" /translation="MAKEGEHGFHAKDYVDPPPAPLIDAAELKKWSFYRALIAEFIAT LLFLYITVLTVIGNKSQVGTSNDSCAGVGILGIAWAFGGMIFILVYCTAGISGGHINP AVTFGLFVARKVSLIRAIAYMVAQSLGAICGVGLVKAFQKSFYNRYGGGANTLSDGYS TGTGLGAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFMVHLATIPVTG TGINPARSFGAAVIYNNKKAWDDHWIFWVGPMIGAAIAAFYHQFILRAGAAKALGSFR SQTHV" mobile_element 4148579..4148661 /note="source:CACAO_PIF_E144_scaffold_10 5987 6060" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4148621..4148694) /note="source:scaffold_1_CACTA_0006 8403 8477" /mobile_element_type="transposon:TIR/CACTA" gene complement(4151234..4152288) /locus_tag="TCM_043140" /note="dbxref CacaoGD:Thecc1EG043140" mRNA complement(join(4151234..4152120,4152263..4152288)) /locus_tag="TCM_043140" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.19 coverage" mobile_element 4151631..4151698 /note="source:CACAO_PIF_E465_scaffold_115 5756 5827" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS complement(4151859..4152116) /locus_tag="TCM_043140" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18641.1" /translation="MPNENRWTDSVAIWRKVKRGKVEEFWYCRRPPHRTVHWYQTPNT PLTFYLFIFSDAKNISLYIACQSITSNSFQKKKKLKLKSQK" mobile_element complement(4157933..4158033) /note="source:scaffold_5_CACTA_0608 9781 9878" /mobile_element_type="transposon:TIR/CACTA" gene complement(4158256..4168298) /locus_tag="TCM_043141" /note="dbxref CacaoGD:Thecc1EG043141" mRNA complement(join(4158256..4158281,4159430..4160000, 4160920..4161661,4163112..4163179,4163268..4163371, 4164591..4164743,4165428..4165523,4166009..4166136, 4167082..4167233,4167998..4168298)) /locus_tag="TCM_043141" /product="Decapping 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03940.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03940.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4256t3" mobile_element complement(4158718..4158785) /note="source:scaffold_4_CACTA_0505 18610 18674" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(4161039..4161661,4163268..4163371, 4164591..4164743,4165428..4165523,4166009..4166136, 4167082..4167233,4167998..4168112)) /locus_tag="TCM_043141" /product="Decapping 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03940.1" /inference="similar to AA sequence:frave:gene17607" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc188t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4256t3" CDS complement(join(4161477..4161661,4163112..4163179, 4163268..4163371,4164591..4164743,4165428..4165523, 4166009..4166136,4167082..4167233,4167998..4168077)) /locus_tag="TCM_043141" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Decapping 2 isoform 1" /protein_id="EOY18642.1" /db_xref="Phytozome:POPTR_0008s03940.1" /db_xref="TAIR:AT5G13570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K3Z9" /translation="MSGLHRSSSAPLKNGLPPQELLDDLCSRFVLNVPKEDQQSFERI LFLVEYAHWFYEDNTVEKNPSLKSLSLKEFTSLLFNNCDVLRPYVAHIDDIFKDFTDY KVRVPVTGAIILDETCERCILVKGWKGTSWSFPRGKKNKDEEDHACAIREVLEETGFD VSELLNKDEYIEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWHRLDDLQPATN EVISRGITGLKLYMVAPFLASLKSWIVKHPPPIAPRPDLPLKGICVWKAKNSSTGSNS MIVESQSNKLVTDANPPNIGPGKSFRNFRFDTAAILRALEAGFSA" CDS complement(join(4161592..4161661,4163268..4163371, 4164591..4164743,4165428..4165523,4166009..4166136, 4167082..4167233,4167998..4168077)) /locus_tag="TCM_043141" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene17607" /codon_start=1 /product="Decapping 2 isoform 2" /protein_id="EOY18643.1" /db_xref="TAIR:AT5G13570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K3Z9" /translation="MSGLHRSSSAPLKNGLPPQELLDDLCSRFVLNVPKEDQQSFERI LFLVEYAHWFYEDNTVEKNPSLKSLSLKEFTSLLFNNCDVLRPYVAHIDDIFKDFTDY KVRVPVTGAIILDETCERCILVKGWKGTSWSFPRGKKNKDEEDHACAIREVLEETGFD VSELLNKDEYIEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWHRLDDLQPATN EVISRGITGLKLYMVAPFLADLCVESKEQFYRKQLNDCGKPI" mobile_element 4168506..4168561 /note="source:scaffold_5_CACTA_0612 6251 6304" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4168567..4168647 /note="source:scaffold_5_CACTA_0612 13250 13331" /mobile_element_type="transposon:TIR/CACTA" gene 4169873..>4209342 /locus_tag="TCM_043142" /note="dbxref CacaoGD:Thecc1EG043142" mRNA join(4169873..4170095,4171622..4171976,4172458..4172696, 4173311..4173467,4179109..4179186,4179847..4179921, 4180078..4180197,4181986..4182150,4182423..4182945, 4183212..4183368,4184881..4184990,4186689..4186801, 4187788..4188142,4189331..4190228) /locus_tag="TCM_043142" /product="Zn-dependent exopeptidases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016269001" /inference="similar to AA sequence:Phytozome:GSVIVT01016269001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3082t2" mRNA join(4169978..4170095,4171622..4171976,4172458..4172696, 4173311..4173467,4179109..4179186,4179847..4179921, 4180078..4180197,4181986..4182150,4182423..4182945, 4183212..4183368,4184881..4184990,4186689..4186801, 4187788..4188142,4209319..>4209342) /locus_tag="TCM_043142" /product="Zn-dependent exopeptidases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016269001" /inference="similar to AA sequence:Phytozome:POPTR_0008s03930.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc16922t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc16922t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3082t2" mRNA join(4170003..4170095,4171622..4171976,4172458..4172696, 4173311..4173467,4179109..4179186,4179847..4179921, 4181986..4182150,4182423..4182945,4183212..4183368, 4184881..4184990,4186689..4186801,4187788..4188142, 4189329..4190121) /locus_tag="TCM_043142" /product="Zn-dependent exopeptidases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016269001" /inference="similar to AA sequence:Phytozome:POPTR_0008s03930.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3082t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc16922t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3082t2" mobile_element 4170561..4171565 /note="source:CACAO_on_S_E46_scaffold_2 416 1426" /mobile_element_type="transposon:TIR/Mutator" CDS join(4171638..4171976,4172458..4172696,4173311..4173467, 4179109..4179186,4179847..4179921,4180078..4180197, 4181986..4182150,4182423..4182945,4183212..4183368, 4184881..4184990,4186689..4186801,4187788..4188142, 4209319..>4209341) /locus_tag="TCM_043142" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zn-dependent exopeptidases superfamily protein isoform 2" /protein_id="EOY18645.1" /db_xref="Phytozome:POPTR_0008s03930.1" /db_xref="TAIR:AT5G20660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVZ7" /translation="MRKRPQSSSISADTSASQSSDTPKTDEEAKFNNNVQIKSATRSG FVWLTLFVVIVYSSWTVHYYQFESLPVPLTAVQAGKRGFSEVEAMKHVKGLTELGPHP VGSDALDLALQYVLAASETIKKTAHWEVDVEVDFFHVNSGVIRLLTGLFVGRTIVYSD LNHIILRILPKYVPEAGENAILVSSHIDTVFSTEGAGDCSSCVAVMLELARGISQWAH GFKNAVIFLFNTGEEEGLTGAHSFITQHPWSSTIRMAIDLEAMGIGGKSSIFQAGPHP LAVENFAAVAKYPSGLIIAQDLFSSGAIKSATDFQVYKEVAGLSGLDFVYTDNGAVYH TKNDKLELLKSGSLQHLGENMLSFLLQIASSSHLLKAKTMDGGGKPNHDTAVFFDILG QYMVVYHVRLANMLQYSVIVQSLLIWTTSLLMGGYTAAVSLFFSCLSIILMWIFSISF SAVVAFILPLISSSPVPYIASPWLMVGLFAAPACLGALTGQHLGYLVLQRYISNIYAK RKQLSPVIQADLIKLETERWLFKAGFVQWLVLLIIGTYYKIGSSYVALVWLVPPAFAY GLLEATLTPVRLPRPLKLATLLMGLAIPILVSAGIFIRFANVIIGLIVRFDRNPGDTP EWLASVVLSIFIAVVICLTLVYLLSYIHLSGAKTSVVLSTCILFVLSLAVVFSGIIPP FTEDFARAVNVVHVVDTTGRFGEKPISFVSLSSITPGKLTKEIDQVREGFVCGRHKVI DFVTFSVKYGCLTFDETEGGWNESDIPMLDVVYDTNNGVRRITQVAIDTKRSIRWFLA INTEEIDDFMFKADSMEVVP" CDS join(4171638..4171976,4172458..4172696,4173311..4173467, 4179109..4179186,4179847..4179921,4180078..4180197, 4181986..4182150,4182423..4182945,4183212..4183368, 4184881..4184990,4186689..4186801,4187788..4188142, 4189331..4189713) /locus_tag="TCM_043142" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zn-dependent exopeptidases superfamily protein isoform 1" /protein_id="EOY18644.1" /db_xref="Phytozome:GSVIVT01016269001" /db_xref="TAIR:AT5G20660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVZ7" /translation="MRKRPQSSSISADTSASQSSDTPKTDEEAKFNNNVQIKSATRSG FVWLTLFVVIVYSSWTVHYYQFESLPVPLTAVQAGKRGFSEVEAMKHVKGLTELGPHP VGSDALDLALQYVLAASETIKKTAHWEVDVEVDFFHVNSGVIRLLTGLFVGRTIVYSD LNHIILRILPKYVPEAGENAILVSSHIDTVFSTEGAGDCSSCVAVMLELARGISQWAH GFKNAVIFLFNTGEEEGLTGAHSFITQHPWSSTIRMAIDLEAMGIGGKSSIFQAGPHP LAVENFAAVAKYPSGLIIAQDLFSSGAIKSATDFQVYKEVAGLSGLDFVYTDNGAVYH TKNDKLELLKSGSLQHLGENMLSFLLQIASSSHLLKAKTMDGGGKPNHDTAVFFDILG QYMVVYHVRLANMLQYSVIVQSLLIWTTSLLMGGYTAAVSLFFSCLSIILMWIFSISF SAVVAFILPLISSSPVPYIASPWLMVGLFAAPACLGALTGQHLGYLVLQRYISNIYAK RKQLSPVIQADLIKLETERWLFKAGFVQWLVLLIIGTYYKIGSSYVALVWLVPPAFAY GLLEATLTPVRLPRPLKLATLLMGLAIPILVSAGIFIRFANVIIGLIVRFDRNPGDTP EWLASVVLSIFIAVVICLTLVYLLSYIHLSGAKTSVVLSTCILFVLSLAVVFSGIIPP FTEDFARAVNVVHVVDTTGRFGEKPISFVSLSSITPGKLTKEIDQVREGFVCGRHKVI DFVTFSVKYGCLTFDETEGGWNESDIPMLDVVYDTNNGVRRITQVAIDTKRSIRWFLA INTEEIDDFMFKADSMEVVPADGKSSKDGWHIIQVSGGKNAPTRFDLTLFWVKKTEQQ SYKMPGQEAGQRPLLKLRTDLNELTPKAERVLKKLPAWCSLFGKSTSPYTLSFLSSLP VNFQTTEITPRDPTDKLYRPLDS" CDS join(4171638..4171976,4172458..4172696,4173311..4173467, 4179109..4179186,4179847..4179921,4181986..4182150, 4182423..4182945,4183212..4183368,4184881..4184990, 4186689..4186801,4187788..4188142,4189329..4189348) /locus_tag="TCM_043142" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Zn-dependent exopeptidases superfamily protein isoform 3" /protein_id="EOY18646.1" /db_xref="Phytozome:POPTR_0008s03930.1" /db_xref="TAIR:AT5G20660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVZ7" /translation="MRKRPQSSSISADTSASQSSDTPKTDEEAKFNNNVQIKSATRSG FVWLTLFVVIVYSSWTVHYYQFESLPVPLTAVQAGKRGFSEVEAMKHVKGLTELGPHP VGSDALDLALQYVLAASETIKKTAHWEVDVEVDFFHVNSGVIRLLTGLFVGRTIVYSD LNHIILRILPKYVPEAGENAILVSSHIDTVFSTEGAGDCSSCVAVMLELARGISQWAH GFKNAVIFLFNTGEEEGLTGAHSFITQHPWSSTIRMAIDLEAMGIGGKSSIFQAGPHP LAVENFAAVAKYPSGLIIAQNDKLELLKSGSLQHLGENMLSFLLQIASSSHLLKAKTM DGGGKPNHDTAVFFDILGQYMVVYHVRLANMLQYSVIVQSLLIWTTSLLMGGYTAAVS LFFSCLSIILMWIFSISFSAVVAFILPLISSSPVPYIASPWLMVGLFAAPACLGALTG QHLGYLVLQRYISNIYAKRKQLSPVIQADLIKLETERWLFKAGFVQWLVLLIIGTYYK IGSSYVALVWLVPPAFAYGLLEATLTPVRLPRPLKLATLLMGLAIPILVSAGIFIRFA NVIIGLIVRFDRNPGDTPEWLASVVLSIFIAVVICLTLVYLLSYIHLSGAKTSVVLST CILFVLSLAVVFSGIIPPFTEDFARAVNVVHVVDTTGRFGEKPISFVSLSSITPGKLT KEIDQVREGFVCGRHKVIDFVTFSVKYGCLTFDETEGGWNESDIPMLDVVYDTNNGVR RITQVAIDTKRSIRWFLAINTEEIDDFMFKERIQWR" mRNA join(4172672..4172696,4173311..4173467,4179109..4179186, 4179847..4179921,4180078..4180197,4181986..4182150, 4182423..4182945,4183212..4183368,4184881..4184990, 4186689..4186801,4187788..4188142,4189331..4189462, 4191759..4191765,4194881..4194890,4197026..4197056, 4200876..4200882,4209059..4209278) /locus_tag="TCM_043142" /product="Zn-dependent exopeptidases superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016269001" /inference="similar to AA sequence:Phytozome:POPTR_0008s03930.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9523t13; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc16922t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3082t2" mRNA join(4172672..4172696,4173311..4173467,4179109..4179186, 4179847..4179921,4180078..4180197,4181986..4182150, 4182423..4182945,4183212..4183368,4184881..4184990, 4186689..4186801,4187788..4188142,4189331..4189463, 4208074..4208451) /locus_tag="TCM_043142" /product="Zn-dependent exopeptidases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016269001" /inference="similar to AA sequence:Phytozome:POPTR_0008s03930.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc402t16_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc16922t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3082t2" CDS join(4173348..4173467,4179109..4179186,4179847..4179921, 4180078..4180197,4181986..4182150,4182423..4182945, 4183212..4183368,4184881..4184990,4186689..4186801, 4187788..4188142,4189331..4189463,4208074..4208104) /locus_tag="TCM_043142" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Zn-dependent exopeptidases superfamily protein isoform 4" /protein_id="EOY18647.1" /db_xref="Phytozome:POPTR_0008s03930.1" /db_xref="TAIR:AT5G20660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVZ7" /translation="MLELARGISQWAHGFKNAVIFLFNTGEEEGLTGAHSFITQHPWS STIRMAIDLEAMGIGGKSSIFQAGPHPLAVENFAAVAKYPSGLIIAQDLFSSGAIKSA TDFQVYKEVAGLSGLDFVYTDNGAVYHTKNDKLELLKSGSLQHLGENMLSFLLQIASS SHLLKAKTMDGGGKPNHDTAVFFDILGQYMVVYHVRLANMLQYSVIVQSLLIWTTSLL MGGYTAAVSLFFSCLSIILMWIFSISFSAVVAFILPLISSSPVPYIASPWLMVGLFAA PACLGALTGQHLGYLVLQRYISNIYAKRKQLSPVIQADLIKLETERWLFKAGFVQWLV LLIIGTYYKIGSSYVALVWLVPPAFAYGLLEATLTPVRLPRPLKLATLLMGLAIPILV SAGIFIRFANVIIGLIVRFDRNPGDTPEWLASVVLSIFIAVVICLTLVYLLSYIHLSG AKTSVVLSTCILFVLSLAVVFSGIIPPFTEDFARAVNVVHVVDTTGRFGEKPISFVSL SSITPGKLTKEIDQVREGFVCGRHKVIDFVTFSVKYGCLTFDETEGGWNESDIPMLDV VYDTNNGVRRITQVAIDTKRSIRWFLAINTEEIDDFMFKADSMEVVPADGKSSKDGWH IIQVSGGKNAPTRFDLTLFWVKKTEQILMTSCLKV" CDS join(4173348..4173467,4179109..4179186,4179847..4179921, 4180078..4180197,4181986..4182150,4182423..4182945, 4183212..4183368,4184881..4184990,4186689..4186801, 4187788..4188142,4189331..4189462,4191759..4191765, 4194881..4194890,4197026..4197028) /locus_tag="TCM_043142" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Zn-dependent exopeptidases superfamily protein isoform 5" /protein_id="EOY18648.1" /db_xref="Phytozome:POPTR_0008s03930.1" /db_xref="TAIR:AT5G20660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVZ7" /translation="MLELARGISQWAHGFKNAVIFLFNTGEEEGLTGAHSFITQHPWS STIRMAIDLEAMGIGGKSSIFQAGPHPLAVENFAAVAKYPSGLIIAQDLFSSGAIKSA TDFQVYKEVAGLSGLDFVYTDNGAVYHTKNDKLELLKSGSLQHLGENMLSFLLQIASS SHLLKAKTMDGGGKPNHDTAVFFDILGQYMVVYHVRLANMLQYSVIVQSLLIWTTSLL MGGYTAAVSLFFSCLSIILMWIFSISFSAVVAFILPLISSSPVPYIASPWLMVGLFAA PACLGALTGQHLGYLVLQRYISNIYAKRKQLSPVIQADLIKLETERWLFKAGFVQWLV LLIIGTYYKIGSSYVALVWLVPPAFAYGLLEATLTPVRLPRPLKLATLLMGLAIPILV SAGIFIRFANVIIGLIVRFDRNPGDTPEWLASVVLSIFIAVVICLTLVYLLSYIHLSG AKTSVVLSTCILFVLSLAVVFSGIIPPFTEDFARAVNVVHVVDTTGRFGEKPISFVSL SSITPGKLTKEIDQVREGFVCGRHKVIDFVTFSVKYGCLTFDETEGGWNESDIPMLDV VYDTNNGVRRITQVAIDTKRSIRWFLAINTEEIDDFMFKADSMEVVPADGKSSKDGWH IIQVSGGKNAPTRFDLTLFWVKKTEPNFTLT" mobile_element 4174088..4174999 /note="source:INTACT269_F1_scaffold_1-int 1 941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4175000..4175498) /note="source:CACAO_M_E85251_F118_scaffold_10 1 499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4175499..4175670) /note="source:CACAO_M_E947_F1_scaffold_1 4204 4375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4175668..4176122 /note="source:CACAO_M_E34616_F1_scaffold_5 1420 1876" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4176115..4178478 /note="source:CACAO_M_E34616_F1_scaffold_5 3018 5383" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4190532..4197028) /locus_tag="TCM_043143" /note="dbxref CacaoGD:Thecc1EG043143" mRNA complement(join(4190532..4190811,4191427..4191745, 4191902..4192020,4192169..4192202,4193747..4194346, 4196680..4197028)) /locus_tag="TCM_043143" /product="Uncharacterized protein" /note="quality class is medium, express is strong, homology is paralog medium, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00046t00006" mobile_element complement(4191387..4191469) /note="source:scaffold_5_CACTA_0612 14390 14471" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(4191478..4191745,4191902..4191915)) /locus_tag="TCM_043143" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18649.1" /translation="MANPRNSCILLTKRSITGLGVVLFLMLVHLLPLPASSEESVQVQ GVLGIPKYQRPPCNADHPNHCPKAVKGARSRHCNVANRCRGVHEPPSRS" mobile_element 4193156..4193229 /note="source:CACAO_on_E455_scaffold_2 27 102" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4193158..4193253) /note="source:CACAO_MITE61_scaffold_4 619 717" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(4194965..4196024) /note="source:CACAO_M_S_E84604_F20_scaffold_6 701 1795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4196925..4196994 /note="source:scaffold_4_CACTA_0510 2136 2619" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4196995..4197377) /note="source:MITE_Unknow_2_24 2 427" /mobile_element_type="transposon:TIR/MITE" mobile_element 4198091..4198218 /note="source:CACAO_M_E23991_F4_scaffold_4 2501 2632" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4198473..4198560 /note="source:scaffold_5_CACTA_0612 12449 12541" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4198718..4198771) /note="source:INTACT1_F64_scaffold_3-int 6655 6711" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4198781..4199460) /note="source:CACAO_MITE163_scaffold_10 1 680" /mobile_element_type="transposon:TIR/MITE" mobile_element 4199863..4200011 /note="source:CACAO_Mutator_E1376_scaffold_6 1864 2011" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4200012..4200151 /note="source:CACAO_Mutator_E1376_scaffold_6 1884 2022" /mobile_element_type="transposon:TIR/Mutator" gene 4203075..4210511 /locus_tag="TCM_043146" /note="dbxref CacaoGD:Thecc1EG043146" mRNA join(4203075..4203630,4207744..4208098,4208184..4208233, 4208724..4208740,4209041..4209204,4209319..4209695, 4210370..4210511) /locus_tag="TCM_043146" /product="Zn-dependent exopeptidases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g001320.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043142t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s03930.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage" CDS join(4203592..4203630,4207744..4208098,4208184..4208233, 4208724..4208740,4209041..4209204,4209319..4209668) /locus_tag="TCM_043146" /note="paralog of Thecc1EG043142t2" /codon_start=1 /product="Zn-dependent exopeptidases superfamily protein" /protein_id="EOY18650.1" /db_xref="Phytozome:POPTR_0008s03930.1" /db_xref="TAIR:AT5G20660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVZ7" /translation="MVARKGVGCYSAMVVHVVDATGRFGEKPISFVSLTSITPGKLTK EIDQVREGFECGRHKVIDFVTFSVKYGCLTFDEIEGGWNESDIPTLDVVYDTNNGVRR ITQVAIDTKRSIRWFLAINIEDIDDFMFKGGKTKKRNKAEMKMEKGLVSRSRSNFAES IDYWSDCSTGWINLTTARLLGFLCDISEISFPKASEIGEEEFLVCLRNADSMEVVPAD GKSSKDGWHIIQVSGGKNAPTRFDLTLFWVKKTEQQSHEMPGQEAEQRPLLKLRTDLN ELTPKVERILKKLPAWCSLFGKSISSHTLSFLSSLPVNFQTPEIPLDS" mobile_element complement(4203992..4204059) /note="source:CACAO_Helitron_E81_scaffold_3 3042 3108" /mobile_element_type="transposon:Helitron" mobile_element complement(4204057..4204354) /note="source:CACAO_Helitron_E81_scaffold_3 2558 2839" /mobile_element_type="transposon:Helitron" mobile_element complement(4204477..4204573) /note="source:CACAO_PIF_E119_scaffold_3 2185 2281" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4204574..4205281) /note="source:CACAO_on_E445_scaffold_2 1 703" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4206111..4206201 /note="source:CACAO_Helitron_S_E29_scaffold_3 767 858" /mobile_element_type="transposon:Helitron" mobile_element 4206260..4206445 /note="source:CACAO_Helitron_S_E29_scaffold_3 909 1090" /mobile_element_type="transposon:Helitron" mobile_element 4207010..4207601 /note="source:MITE_hAT_5 1 646" /mobile_element_type="transposon:TIR/MITE" gene complement(4210501..4214289) /locus_tag="TCM_043147" /note="dbxref CacaoGD:Thecc1EG043147" mRNA complement(join(4210501..4210892,4211269..4211484, 4211626..4211711,4212160..4212203,4212411..4212621, 4213374..4213646,4214080..4214289)) /locus_tag="TCM_043147" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3270t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4358t1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc572t60" mRNA complement(join(4210656..4210892,4211269..4211484, 4211626..4211711,4212160..4212203,4212411..4212621, 4213374..4213646,4213805..4213832)) /locus_tag="TCM_043147" /product="Uncharacterized protein isoform 1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc116t30; alternateUTRof:Thecc1EG043147t1" mRNA complement(join(4210689..4210892,4211269..4211484, 4211626..4211711,4212160..4212203,4212411..4212621, 4213374..4213646,4213834..4213928,4214080..4214138)) /locus_tag="TCM_043147" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4358t1" mRNA complement(join(4211137..4211484,4211626..4211711, 4212160..4212203,4212411..4212621,4213374..4213631, 4213801..4213926,4213980..4213990,4214080..4214254)) /locus_tag="TCM_043147" /product="Uncharacterized protein isoform 1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc2680t61; alternateUTRof:Thecc1EG043147t1" CDS complement(join(4211306..4211484,4211626..4211711, 4212160..4212203,4212411..4212621,4213374..4213646, 4214080..4214126)) /locus_tag="TCM_043147" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18652.1" /translation="MQQSIFSLAASQQIPRNIPSSIWLRKRSMTGLGMVLCLILVPLL PLLVSSEESVQVQNAIVIPKYQSPPCNADHPNNCPKPVNHTSSNHCNVANRCRIHSMF YEDGSGNRFLVELIVEGGPAKLTDLVLTEAVTTAISRWLVKKTKDKASGQLRILINTI DGHSPTSADSPTSAQLQYAACQAIRQVGLNFELASTPASDGTHSEKVASFDPFYANIT ITASRPGKAVMFEFSTIAKGLGEADVNGIMKPVPDMFHKLWLKATRMESEGHEESMSP PKS" CDS complement(join(4211306..4211484,4211626..4211711, 4212160..4212203,4212411..4212621,4213374..4213609)) /locus_tag="TCM_043147" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18651.1" /translation="MTGLGMVLCLILVPLLPLLVSSEESVQVQNAIVIPKYQSPPCNA DHPNNCPKPVNHTSSNHCNVANRCRIHSMFYEDGSGNRFLVELIVEGGPAKLTDLVLT EAVTTAISRWLVKKTKDKASGQLRILINTIDGHSPTSADSPTSAQLQYAACQAIRQVG LNFELASTPASDGTHSEKVASFDPFYANITITASRPGKAVMFEFSTIAKGLGEADVNG IMKPVPDMFHKLWLKATRMESEGHEESMSPPKS" CDS complement(join(4211306..4211484,4211626..4211711, 4212160..4212203,4212411..4212621,4213374..4213609)) /locus_tag="TCM_043147" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18653.1" /translation="MTGLGMVLCLILVPLLPLLVSSEESVQVQNAIVIPKYQSPPCNA DHPNNCPKPVNHTSSNHCNVANRCRIHSMFYEDGSGNRFLVELIVEGGPAKLTDLVLT EAVTTAISRWLVKKTKDKASGQLRILINTIDGHSPTSADSPTSAQLQYAACQAIRQVG LNFELASTPASDGTHSEKVASFDPFYANITITASRPGKAVMFEFSTIAKGLGEADVNG IMKPVPDMFHKLWLKATRMESEGHEESMSPPKS" CDS complement(join(4211306..4211484,4211626..4211711, 4212160..4212203,4212411..4212621,4213374..4213609)) /locus_tag="TCM_043147" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18654.1" /translation="MTGLGMVLCLILVPLLPLLVSSEESVQVQNAIVIPKYQSPPCNA DHPNNCPKPVNHTSSNHCNVANRCRIHSMFYEDGSGNRFLVELIVEGGPAKLTDLVLT EAVTTAISRWLVKKTKDKASGQLRILINTIDGHSPTSADSPTSAQLQYAACQAIRQVG LNFELASTPASDGTHSEKVASFDPFYANITITASRPGKAVMFEFSTIAKGLGEADVNG IMKPVPDMFHKLWLKATRMESEGHEESMSPPKS" mobile_element 4214289..4214706 /note="source:INTACT135F_F90_scaffold_2-int 13590 14007" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(4215358..4220818) /locus_tag="TCM_043150" /note="dbxref CacaoGD:Thecc1EG043150" mRNA complement(join(4215358..4216555,4216755..4216968, 4219156..4219292,4220342..4220818)) /locus_tag="TCM_043150" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene22857" /note="quality class is medium-expresste, express is medium, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00296t00002_C1" CDS complement(join(4215472..4216555,4216755..4216968, 4219156..4219292,4220342..4220475)) /locus_tag="TCM_043150" /note="dbxref frave:gene22857" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18655.1" /translation="MFFAKARESDEANLNENTKKKKREDYFVKTDRTYYADDYETVSV RCLDWLDGLKSPQKENNPNGYKVLAQPPKEIEFSPRAHVTRNIYKFDILQPMLIELVG DTQSSFIPEQQASDNVIVMQEAIHTMQIMKRRKGVLAIKINLEKAHGRLKWSFLQESL WRNWQTKNGPTLSHVCFADDIKLFGTATQNQLQVMMRDIHKFCSALDQKVNRQKSKML VFSNINPTRAKELSCAAYTSLTNDFGKYLGTPMLHGRVQRTTYSDLCSKLLRKLDQWS NKFLSMAGRVSLVQAVTNTMALYIMQTTLIPDNVAKEIDKLNFICGRLGGERKIHAIT GAPFVFPKTLEVYRLERPGNLICFTCQAWLEIVARKGFFLVEILWKKYLQNNDLFSVK AKSSDSHIWSSILKNREVLAKRLAMVVNDGLHTKFWLDSWLPCGPLIGFVTRDLSLAE IDLPVACFCDDYGNWDLDSRTDSLPMQVIQKTAPYSIDPSSTENDKCLWTLTSSGEFT VKSAYESLKCNKSA" mobile_element complement(4217606..4217708) /note="source:CACAO_hAT_E962_scaffold_2 4305 4398" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(4218029..4218728) /note="source:scaffold_2_CACTA_0244 12771 13467" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4219739..4219904 /note="source:CACAO_PIF_E31_scaffold_2 25 217" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4220866..4220951 /note="source:scaffold_4_CACTA_0510 2136 2628" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4220952..4221334) /note="source:MITE_Unknow_2_24 2 427" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(4222103..4222419) /note="source:CACAO_MITE163_scaffold_10 1 315" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(4223700..4223944) /note="source:CACAO_M_S_E89247_F225_scaffold_8 1268 1509" /mobile_element_type="retrotransposon:LTR/Copia" gene 4224263..4229060 /locus_tag="TCM_043151" /note="dbxref CacaoGD:Thecc1EG043151" mRNA join(4224263..4224415,4226734..4226813,4228343..4229060) /locus_tag="TCM_043151" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS join(4224331..4224415,4226734..4226813,4228343..4228543) /locus_tag="TCM_043151" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18656.1" /translation="MRFLWRKFLRNGSNKFLNLTSHIYRQPIRQISLKGEREECKRRA AKLRSSWGDSVRGNRRQKERGREEKRKGKERGSYRQGLGRRRLRRRHRGPTKGEMVAT KGVGCYSAMVSERKRAKDE" mobile_element 4224965..4225066 /note="source:scaffold_7_CACTA_0786 623 720" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4228939..4229216) /note="source:CACAO_Helitron_E81_scaffold_3 2558 2839" /mobile_element_type="transposon:Helitron" mobile_element complement(4235084..4235271) /note="source:scaffold_7_CACTA_0795 2862 3027" /mobile_element_type="transposon:TIR/CACTA" gene 4236150..4240633 /locus_tag="TCM_043153" /note="dbxref CacaoGD:Thecc1EG043153" mRNA join(4236150..4236722,4237609..4238005,4239840..4240347) /locus_tag="TCM_043153" /product="Acyl-CoA N-acyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400056277" /inference="similar to AA sequence:Phytozome:POPTR_0008s03920.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4359t1" mRNA join(4236323..4236722,4237609..4238005,4239840..4240633) /locus_tag="TCM_043153" /product="Acyl-CoA N-acyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400056277" /inference="similar to AA sequence:Phytozome:POPTR_0008s03920.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc501t3; alternateUTRof:Thecc1EG043153t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4359t1" CDS join(4236551..4236722,4237609..4238005,4239840..4240128) /locus_tag="TCM_043153" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein isoform 1" /protein_id="EOY18657.1" /db_xref="Phytozome:POPTR_0008s03920.1" /db_xref="TAIR:AT2G39000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZV08" /translation="MRSLPLGTSITVSPATTTTTASSKSCLPPLSVSKKQPPPFLCSS SPRVSHDPSLSKSGVCRATQVVDLFSTLSPEIVVREARLEDCWEVAETHCSSFFPEYS FPLDFVLRVDRLVAMLSGFSIPPGCRRTCLVAVIGGSADDTFIFGSEDFKIGGFDGKF SLNRGYVTGILTVDSVADFLPRKGPLRQRRTGIAYISNVAVRERFRRKGIAKRLISKA EAQARSWGCRAIALHCDLNNPGAIKLYKGQGFRCIKVPEGANWPQPKTSPDVKFNFMM KLLNTPTMA" CDS join(4236551..4236722,4237609..4238005,4239840..4240128) /locus_tag="TCM_043153" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein isoform 1" /protein_id="EOY18658.1" /db_xref="Phytozome:POPTR_0008s03920.1" /db_xref="TAIR:AT2G39000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZV08" /translation="MRSLPLGTSITVSPATTTTTASSKSCLPPLSVSKKQPPPFLCSS SPRVSHDPSLSKSGVCRATQVVDLFSTLSPEIVVREARLEDCWEVAETHCSSFFPEYS FPLDFVLRVDRLVAMLSGFSIPPGCRRTCLVAVIGGSADDTFIFGSEDFKIGGFDGKF SLNRGYVTGILTVDSVADFLPRKGPLRQRRTGIAYISNVAVRERFRRKGIAKRLISKA EAQARSWGCRAIALHCDLNNPGAIKLYKGQGFRCIKVPEGANWPQPKTSPDVKFNFMM KLLNTPTMA" gene complement(4240362..4252692) /locus_tag="TCM_043154" /note="dbxref CacaoGD:Thecc1EG043154" mRNA complement(join(4240362..4240751,4240835..4240912, 4241071..4241141,4241359..4241398,4241532..4241627, 4242172..4242235,4242549..4242578,4242687..4242819, 4242890..4242947,4243203..4243267,4243500..4243681, 4243817..4243987,4245455..4245513,4245597..4245674, 4245832..4245928,4246007..4246161,4246295..4246390, 4246948..4247009,4247088..4247160,4247269..4247350, 4247442..4247559,4247647..4247707,4247960..4248024, 4248244..4248474,4248671..4248759,4249399..4249451, 4250013..4250196,4251084..4251150,4251391..4251615, 4252348..4252692)) /locus_tag="TCM_043154" /product="Phosphoglucosamine mutase family protein" /inference="alignment:exonerate- protein:2:ricco:27516.m000169" /inference="similar to AA sequence:Phytozome:GSVIVT01016267001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04752t00001" CDS complement(join(4240557..4240751,4240835..4240912, 4241071..4241141,4241359..4241398,4241532..4241627, 4242172..4242235,4242549..4242578,4242687..4242819, 4242890..4242947,4243203..4243267,4243500..4243681, 4243817..4243987,4245455..4245513,4245597..4245674, 4245832..4245928,4246007..4246161,4246295..4246390, 4246948..4247009,4247088..4247160,4247269..4247350, 4247442..4247559,4247647..4247707,4247960..4248024, 4248244..4248474,4248671..4248759,4249399..4249451, 4250013..4250196,4251084..4251150,4251391..4251615, 4252348..4252354)) /locus_tag="TCM_043154" /codon_start=1 /product="Phosphoglucosamine mutase family protein" /protein_id="EOY18659.1" /db_xref="Phytozome:GSVIVT01016267001" /db_xref="TAIR:AT5G17530.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KH14" /translation="MAAMSGKVVQNVFKAQCYQQNRQFGTQYQRDSCAPYMRTLPPFH GGKLAWTGISSMQMRNLSKYQSGFVSRGTFYCNASSSATAVPSLDKVDFLKLQNGSDI RGVAVAGVEGEPVSLTEPVTEAIAAAFAAWLLDKKKVDASRRLKVSIGHDSRISAQML QDAVSRGISGAGLDVVQYGLASTPAMFNSALTEDKAILCPVDGAIMITASHLPYNRNG FKFFTNAGGLGKADIKDILERAADIYSNFLTEGYSGKKASASVQKVDYMAVYTSDLVK AVRKAAGNREKPLEGFHIIVDAGNGAGGFFASQVLEPLGAITSGSQFLEPDGMFPNHI PNPEDKVAMKAITQAVLDNKADLGIIFDTDVDRSAAVDSSGREFNRNRLIALVSAIVL EEHPSTTIVTDSVTSDGLTSFIEKKLGGKHHRFKRGYKNVIDEAMRLNSVGEESHLAI ETSGHGALKENHWLDDGAYLMVKLLNKLASARASGRDDGSKVLTDLVEGLEEPAIAVE LRLKINQSHPDLKGGSFRDYGEAVLKHLENSIASDPKLQKAPVNYEGVRVSGLGGWFL LRLSLHDPVLPLNIEAPSREDAVKLGLEVAAAVKDLASTPAIFNSTLTEDEAFLSPVD GVIMITGSLRLYSSEDGIFEYVRVHMHENPAAQWNGFRFFTNAGGLGKTDIKDILERA ADIYSNFLTTSVQKVDYMAVYTSDLVKAVRKAAGNVEKPLEGFHIIVDAGNGAGEFFA AKVLEPLGAITSGCQFLEPGYVIMGSSMFPNHIPNPEDKVAMKALLPRQFLTTRPTWG SSLMQRSAAVDSTVRGGKAPYRFTRGYKNVIDEAIRMNSVGEESHLAIESSGQGALKE DHWLDDGSYLMVKLLNKLASARASVLKHLENSIASDPKLQKAPVNYEGVRVSGFGGWF LLWLPLHDHVLPLNIEAPSCEDAVKFGLEVAAAVKEFPALDTSALDKFVQTQYAERRS LSAFGLRSSGCRLFRDELTCLT" gene 4253516..4260358 /locus_tag="TCM_043155" /note="dbxref CacaoGD:Thecc1EG043155" mRNA join(4253516..4253659,4257506..4258403,4258497..4260358) /locus_tag="TCM_043155" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021890t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage" mobile_element complement(4255307..4255714) /note="source:CACAO_on_E763_scaffold_10 1 408" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4255792..4256567) /note="source:CACAO_M_S_E67251_F2_scaffold_6 1 815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4257427..4260619) /note="source:INTACT411_F19_scaffold_10-int 1 3193" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(4258104..4258403,4258497..4260074) /locus_tag="TCM_043155" /note="paralog of Thecc1EG021890t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18660.1" /translation="MSPRRQNRQRDDHEIEIAELRQQIQELQEQLARRDAQINNSNSS DEENDTNPFHQNLSSDEEVPIRRLRTAATRDLRIKVDILEFEGRLHPDDFLDWLYTEN LKRQREREGRNKIRTWDKMRRELKRKFLPEHYRQEIFIKFHNLRQKTMTVEEYTMEFE QLHMKCDVHEPEEQTLARYLGGLNVEIADVVQLQPYWNLNDVIRLTLKVEKQQSRKRS MSSSRQQESISNDESQSSVTIPPPKVNSSKTASSNDKETTFTRASNVNKKCFKCQRFG HIASDCPSRRIISLVEEEDYVNWEKLEPVYDEYDDEEIEEVSADHGEAFIVRRNLNTA LMTKDESCLRHNIFYTRCTSQGNVCNVIIDSGSCENVVANYMVEKLKLPTEVHPHPYK LQWLRKGNEVKVTKRCCIQFFIRNKYEDEVWCDVIPMDACHLLLGRPWQYDRRAHYDG YKNTYSFIKDGVKIMLTPLKPEDRPKRQEEDKALITVPSLSKAYCESNHLCLLLVSKE NKVSSSLSNDGQTKLINQSSRNLSRSFVDNHAVNKTTIKYDFPIPRLDNMFIGSKVFL KMDLKKRDQQIRIRLGDEWKTTFKTMDELIKWLVWTMTIYGSRHQHGVCLGLLIRAEF F" mobile_element complement(4264203..4264333) /note="source:CACAO_M_S_E6055_F310_scaffold_2 4907 5029" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4265023..4266025 /locus_tag="TCM_043156" /note="dbxref CacaoGD:Thecc1EG043156" mRNA 4265023..4266025 /locus_tag="TCM_043156" /product="Ubiquitin-like protein 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g29290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042065t1" /inference="similar to AA sequence:frave:gene16845" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4254t1" CDS 4265231..4265452 /locus_tag="TCM_043156" /note="dbxref frave:gene16845; paralog of Thecc1EG042065t1" /codon_start=1 /product="Ubiquitin-like protein 5" /protein_id="EOY18661.1" /db_xref="TAIR:AT5G42300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGZ9" /translation="MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRSDKIRI QKWYTVYKDHITLKDYEIHDGMGLELYYN" gene complement(4272162..4275912) /locus_tag="TCM_043157" /note="dbxref CacaoGD:Thecc1EG043157" mRNA complement(join(4272162..4272838,4272942..4273837, 4274024..4275192,4275570..4275912)) /locus_tag="TCM_043157" /product="Auxin response factor 19" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022163t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23000.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc128t1" CDS complement(join(4272769..4272838,4272942..4273837, 4274024..4275118)) /locus_tag="TCM_043157" /note="paralog of Thecc1EG022163t1" /codon_start=1 /product="Auxin response factor 19" /protein_id="EOY18662.1" /db_xref="Phytozome:POPTR_0010s23000.1" /db_xref="TAIR:AT4G30080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93YR9" /translation="MITVMDSRKELLKNSEKCLDPQLWHACAGGMVQMPSVNTKVFYF PQGHAEHANGSVDFGSLLIPSLVLCRIAAVKYMADPETDEVYSKIMLVPSRENDFGYE DDGFDGNIGMENPEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQT ILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRTENGDLCVG IRRAKRGIGSGHEYPCGWNSGGGSSGSQFGGYSPFFREDESKSMRKDSNGDMRGKVRV ESVIEAATCAANGQPFEVVYYPRASTPEFCVKASSIRAAMQIQWYPGMRFKMAFETED SSRISWFMGTISSVQVVDPIRWPNSPWRLLQVAWDEPDLLHNVKRVSPWLVELVSNIP AIHLNPFSPPRKKMRLPQHPDFSLLSQIPMPSFSGNSLRSSSPVCCITDNIPGGIQGA RHAPFGLSSSDLHSNKLQSGLFPLGLQQLDHTAPPTRISNDNLSSDHVNKKNISCMLT TGNPTQSLKESNEVKTPHILLFGQLIFSEQQASQSCSGDTVGNSSSDGNTEKTAISSD GSGSALHQNAQENSSEEGSAWCKEHQRSDLGLEAGHCKVFMESENVGRTLDLSVLRSY EELHGKLANMFGIESSEMLSSVLYCDAAGSVKHTGDEPFSEFLKTARRLTILMDSGSD NVGR" gene complement(4289095..4295601) /locus_tag="TCM_043158" /note="dbxref CacaoGD:Thecc1EG043158" mRNA complement(join(4289095..4290582,4291017..4291289, 4291724..4291802,4292597..4292700,4295522..4295601)) /locus_tag="TCM_043158" /product="Plant-specific GATA-type zinc finger transcription factor family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:27494.m000044" /inference="similar to AA sequence:Phytozome:POPTR_0010s23010.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01587t00001" mRNA complement(join(4289157..4290582,4291017..4291289, 4291724..4291802,4292492..4292608)) /locus_tag="TCM_043158" /product="Plant-specific GATA-type zinc finger transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:27494.m000044" /inference="similar to AA sequence:Phytozome:POPTR_0010s23010.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc189t6; inference alignment:Newbler:10:TSA:cgbaL_g01587t00001" CDS complement(join(4289797..4290582,4291017..4291289, 4291724..4291802,4292597..4292700,4295522..4295524)) /locus_tag="TCM_043158" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Plant-specific GATA-type zinc finger transcription factor family protein isoform 1" /protein_id="EOY18663.1" /db_xref="Phytozome:POPTR_0010s23010.2" /db_xref="TAIR:AT3G54810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLK6" /translation="MSLLPLLFSLCFLPLSPFKTFPFLSLSLSFCLLLSRFLKRNSPH FPRNYLVFPESFFSPVTEGFFIIFYIKENMIGPTNFIDEIDCGSFFDHIDDLLDFPNE DVEAGLSASDSAVNASAFPSIWTTHSESLPGSDSVFSNNSASDLSAELSVPYEDIVQL EWLSNFVDDSQCGASLTIKKEESSSITKDSSQHQFQTSSPVSVLESSSSCSGEKTLPR SPETAAPGRRGRARSKRPRPTTFNPRPAIQLISPTSSVNENDIPQPFVVPKVPSDSEN YAESRLLIKIPRQVNPEHKKKKKIKLSLPTAPADNNQNSSGQAVRKCMHCEITKTPQW RAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVIEMRNKGGAAP TTMVTSSPELIPNKSNPALDFM" CDS complement(join(4289797..4290582,4291017..4291256)) /locus_tag="TCM_043158" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Plant-specific GATA-type zinc finger transcription factor family protein isoform 2" /protein_id="EOY18664.1" /db_xref="Phytozome:POPTR_0010s23010.2" /db_xref="TAIR:AT3G54810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLK6" /translation="MIGPTNFIDEIDCGSFFDHIDDLLDFPNEDVEAGLSASDSAVNA SAFPSIWTTHSESLPGSDSVFSNNSASDLSAELSVPYEDIVQLEWLSNFVDDSQCGAS LTIKKEESSSITKDSSQHQFQTSSPVSVLESSSSCSGEKTLPRSPETAAPGRRGRARS KRPRPTTFNPRPAIQLISPTSSVNENDIPQPFVVPKVPSDSENYAESRLLIKIPRQVN PEHKKKKKIKLSLPTAPADNNQNSSGQAVRKCMHCEITKTPQWRAGPMGPKTLCNACG VRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVIEMRNKGGAAPTTMVTSSPELIPNKS NPALDFM" mobile_element complement(4298874..4299518) /note="source:CACAO_hAT_E410_scaffold_1 1424 2080" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(4301373..4302212) /note="source:CACAO_MITE53_scaffold_3 1 830" /mobile_element_type="transposon:TIR/MITE" mobile_element 4303300..4303362 /note="source:scaffold_3_CACTA_0377 4199 4261" /mobile_element_type="transposon:TIR/CACTA" gene complement(4306467..4323501) /locus_tag="TCM_043160" /note="dbxref CacaoGD:Thecc1EG043160" mRNA complement(join(4306467..4306910,4307109..4307210, 4307583..4307678,4307779..4307922,4308009..4308059, 4308199..4308300,4309377..4309552,4309669..4309732, 4310615..4310940,4311036..4311182,4312423..4312494, 4312584..4312648,4312725..4312820,4313490..4313590, 4313668..4313714,4313792..4313922,4314462..4314523, 4314606..4314671,4314756..4314809,4314922..4314996, 4317027..4317576,4323236..4323501)) /locus_tag="TCM_043160" /product="Pleckstrin (PH) and lipid-binding START domains-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042071t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025201001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc658t5" CDS complement(join(4306818..4306910,4307109..4307210, 4307583..4307678,4307779..4307922,4308009..4308059, 4308199..4308300,4309377..4309552,4309669..4309732, 4310615..4310940,4311036..4311182,4312423..4312494, 4312584..4312648,4312725..4312820,4313490..4313590, 4313668..4313714,4313792..4313922,4314462..4314523, 4314606..4314671,4314756..4314809,4314922..4314996, 4317027..4317164)) /locus_tag="TCM_043160" /note="paralog of Thecc1EG042071t1" /codon_start=1 /product="Pleckstrin (PH) and lipid-binding START domains-containing protein" /protein_id="EOY18665.1" /db_xref="Phytozome:GSVIVT01025201001" /db_xref="TAIR:AT3G54800.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IHT0" /translation="MEAKMEGWLYTIRSNRFGLQFSRKRYFILHNNVLKSYKAIPISD KEEPVRSAMIDSCIRVTDDGRESIHKKVFFIFTLHSTLDHNDQLKLGARSSEEAAIWI RCLKDAALKESRGQAKNFVAFPKKRWPSLRLGSAKTAQIKNFVDWPFRSSVHAEAMTS DVIAPSPWKIFGCQNGLRLFKEAKDGDSRGGHWDDHPAIMAVGVVDGTSETIFRAVMS LGPARSEWDFCLYRGSVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLQRYWRREDDG TYVILYHSVFHKKCLPQSGYVRARLKSGGYVITPVNQGKQSLVKHMLAIDWRFWKLYL RPSAARSLTIRMLERVAALRELLKAKQGNYSSECLAGERRRDIDLHQIEREDFKMEIQ SPKEIIKIEEDVLIENEVEKQASGRISLMSLNEAPDEFFDVPEASEFTDYDPLESEWP PEPSSELRPPNIQQPKLTSAAGLVRKLHDLAIQKKGYMDLQEVAREDSIMCSYGTSLQ KDPTCTLPCSWSAGDPSAFLIRGKNYLKDHQKIKAKGTLMQMVGADWLISDKREDDLG SRLGGIVQKYAARGGPEFFFIVNMQIPGAPMYTLAMYYMIKTPLEDHPLLYNFVNGDD AYRNSRFKLIPYISKGSWIVKQSVGKKACLIGHSLEIHYFRGQNYLEVEVDVGSSTVA RGVSNLVLGYLNNLVIELAFVIQGNTQEELPETLLGTCRLNRLDLSKAPLAMP" mobile_element complement(4318123..4318429) /note="source:scaffold_2_CACTA_0281 434 782" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4321227..4321357 /note="source:scaffold_1_CACTA_0008 14042 14164" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4322389..4322558) /note="source:scaffold_9_CACTA_0942 5127 5293" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4322828..4322945 /note="source:INTACT790_F336_scaffold_10-int 6121 6235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4322933..4323018 /note="source:INTACT790_F336_scaffold_10-int 6189 6260" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4323911..4329081) /locus_tag="TCM_043162" /note="dbxref CacaoGD:Thecc1EG043162" mRNA complement(join(4323911..4324846,4325608..4325697, 4325992..4326060,4326191..4326370,4326904..4327051, 4327170..4327801,4328463..4328507,4328816..4329081)) /locus_tag="TCM_043162" /product="Ribophorin I isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034432t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s03860.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06363t00001" mRNA complement(join(4324103..4324846,4325608..4325697, 4325992..4326060,4326191..4326370,4326904..4327003, 4327170..4327801,4328463..4328507,4328816..4328983)) /locus_tag="TCM_043162" /product="Ribophorin I isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034432t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s03860.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc45t10; inference alignment:Newbler:10:TSA:cgbaB_g06363t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc44t6" mRNA complement(join(4324714..4325457,4325608..4325697, 4325992..4326047,4326182..4326370,4326904..4327003, 4327170..4327801,4328463..4328507,4328816..4328983)) /locus_tag="TCM_043162" /product="Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034432t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s03860.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7954t2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc44t6; inference alignment:Newbler:10:TSA:cgbaB_g06363t00001" CDS complement(join(4324724..4324846,4325608..4325697, 4325992..4326060,4326191..4326370,4326904..4327003, 4327170..4327801,4328463..4328507,4328816..4328932)) /locus_tag="TCM_043162" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG034432t2" /codon_start=1 /product="Ribophorin I isoform 3" /protein_id="EOY18668.1" /db_xref="Phytozome:POPTR_0008s03860.1" /db_xref="TAIR:AT2G01720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVZ7" /translation="MEGPIRAREALALTLFSLLFFLSRSSALHDLLISNAERRIDLSS HIVKVYLTLKVENAGSSPASEVVLAFPPSQVDHLATVEALATKGKRKKTTFVRLEVKP TELPDAPNDTKYFTIYLANPLNSAESITLEVLYMLTHSLEPFPAEIGQSESQLVYYRD SALVLSPYHIKQQTTFIKTPSTKVDSFTRVEPTNRAGTEIKYGPYEDHTPYSFSAILV HFENNSPFAVVEELVREVEISHWGNLQVTEQYKLVHAGARHKGVFSRYLLARLPPRVH SVYYRDEIGNISSSHLRTDSRKSELEIEPRYPLFGGWKATFVIGYGLPLQDFLFESSE DRRYVNFTFGCPLMETVVDKLTIKVVLPEGSKDPSAVVPFPVDQHLETKYSYLDVVGR TVVVLEKKNVVPGHNSHFQVYYTFKPIFMLAEPLMLASAFFLFFVACIAYLHIDLSIR K" CDS complement(join(4324724..4324846,4325608..4325697, 4325992..4326060,4326191..4326370,4326904..4327051, 4327170..4327801,4328463..4328507,4328816..4328932)) /locus_tag="TCM_043162" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034432t2" /codon_start=1 /product="Ribophorin I isoform 1" /protein_id="EOY18666.1" /db_xref="Phytozome:POPTR_0008s03860.1" /db_xref="TAIR:AT2G01720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVZ7" /translation="MEGPIRAREALALTLFSLLFFLSRSSALHDLLISNAERRIDLSS HIVKVYLTLKVENAGSSPASEVVLAFPPSQVDHLATVEALATKGKRKKTTFVRLEVKP TELPDAPNDTKYFTIYLANPLNSAESITLEVLYMLTHSLEPFPAEIGQSESQLVYYRD SALVLSPYHIKQQTTFIKTPSTKVDSFTRVEPTNRAGTEIKYGPYEDHTPYSFSAILV HFENNSPFAVVEELVREVEISHWGNLQVTEQYKLVHAGARHKGVFSRVDYQSKPSFNG VSSFRYLLARLPPRVHSVYYRDEIGNISSSHLRTDSRKSELEIEPRYPLFGGWKATFV IGYGLPLQDFLFESSEDRRYVNFTFGCPLMETVVDKLTIKVVLPEGSKDPSAVVPFPV DQHLETKYSYLDVVGRTVVVLEKKNVVPGHNSHFQVYYTFKPIFMLAEPLMLASAFFL FFVACIAYLHIDLSIRK" mRNA complement(join(4325431..4325457,4325608..4325697, 4325992..4326060,4326191..4326370,4326904..4327003, 4327170..4327801,4328463..4328507,4328816..4328992)) /locus_tag="TCM_043162" /product="Ribophorin I isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034432t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s03860.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc44t2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc44t6; inference alignment:Newbler:10:TSA:cgbaB_g06363t00001" mRNA complement(join(4325431..4325457,4325608..4325697, 4325992..4326060,4326191..4326370,4326904..4327051, 4327170..4327801,4328463..4328507,4328816..4328992)) /locus_tag="TCM_043162" /product="Ribophorin I isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034432t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s03860.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc44t6; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc44t6; inference alignment:Newbler:10:TSA:cgbaB_g06363t00001" CDS complement(join(4325434..4325457,4325608..4325697, 4325992..4326060,4326191..4326370,4326904..4327003, 4327170..4327801,4328463..4328507,4328816..4328932)) /locus_tag="TCM_043162" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG034432t2" /codon_start=1 /product="Ribophorin I isoform 4" /protein_id="EOY18669.1" /db_xref="Phytozome:POPTR_0008s03860.1" /db_xref="TAIR:AT2G01720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVZ7" /translation="MEGPIRAREALALTLFSLLFFLSRSSALHDLLISNAERRIDLSS HIVKVYLTLKVENAGSSPASEVVLAFPPSQVDHLATVEALATKGKRKKTTFVRLEVKP TELPDAPNDTKYFTIYLANPLNSAESITLEVLYMLTHSLEPFPAEIGQSESQLVYYRD SALVLSPYHIKQQTTFIKTPSTKVDSFTRVEPTNRAGTEIKYGPYEDHTPYSFSAILV HFENNSPFAVVEELVREVEISHWGNLQVTEQYKLVHAGARHKGVFSRYLLARLPPRVH SVYYRDEIGNISSSHLRTDSRKSELEIEPRYPLFGGWKATFVIGYGLPLQDFLFESSE DRRYVNFTFGCPLMETVVDKLTIKVVLPEGSKDPSAVVPFPVDQHLETKYSYLDVVGR TVVVLEKKNVVPGHNSHFQAVLFCPN" CDS complement(join(4325434..4325457,4325608..4325697, 4325992..4326060,4326191..4326370,4326904..4327051, 4327170..4327801,4328463..4328507,4328816..4328932)) /locus_tag="TCM_043162" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034432t2" /codon_start=1 /product="Ribophorin I isoform 2" /protein_id="EOY18667.1" /db_xref="Phytozome:POPTR_0008s03860.1" /db_xref="TAIR:AT2G01720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVZ7" /translation="MEGPIRAREALALTLFSLLFFLSRSSALHDLLISNAERRIDLSS HIVKVYLTLKVENAGSSPASEVVLAFPPSQVDHLATVEALATKGKRKKTTFVRLEVKP TELPDAPNDTKYFTIYLANPLNSAESITLEVLYMLTHSLEPFPAEIGQSESQLVYYRD SALVLSPYHIKQQTTFIKTPSTKVDSFTRVEPTNRAGTEIKYGPYEDHTPYSFSAILV HFENNSPFAVVEELVREVEISHWGNLQVTEQYKLVHAGARHKGVFSRVDYQSKPSFNG VSSFRYLLARLPPRVHSVYYRDEIGNISSSHLRTDSRKSELEIEPRYPLFGGWKATFV IGYGLPLQDFLFESSEDRRYVNFTFGCPLMETVVDKLTIKVVLPEGSKDPSAVVPFPV DQHLETKYSYLDVVGRTVVVLEKKNVVPGHNSHFQAVLFCPN" CDS complement(join(4325658..4325697,4325992..4326047, 4326182..4326370,4326904..4327003,4327170..4327801, 4328463..4328507,4328816..4328932)) /locus_tag="TCM_043162" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG034432t2" /codon_start=1 /product="Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 isoform 5" /protein_id="EOY18670.1" /db_xref="Phytozome:POPTR_0008s03860.1" /db_xref="TAIR:AT2G01720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVZ7" /translation="MEGPIRAREALALTLFSLLFFLSRSSALHDLLISNAERRIDLSS HIVKVYLTLKVENAGSSPASEVVLAFPPSQVDHLATVEALATKGKRKKTTFVRLEVKP TELPDAPNDTKYFTIYLANPLNSAESITLEVLYMLTHSLEPFPAEIGQSESQLVYYRD SALVLSPYHIKQQTTFIKTPSTKVDSFTRVEPTNRAGTEIKYGPYEDHTPYSFSAILV HFENNSPFAVVEELVREVEISHWGNLQVTEQYKLVHAGARHKGVFSRYLLARLPPRVH SVYYRDEIGNISSSHLRTDSRKSELEIEPRYPLFGGWKATFVIGYGLPLQDFLFESSE DRRYVNFTFGCPLMETVVDKLTIKVGLRDQKTLLLLFRSPWTSILRPNILTLMLWGGL " gene 4330286..4335278 /locus_tag="TCM_043164" /note="dbxref CacaoGD:Thecc1EG043164" mRNA join(4330286..4330573,4331183..4331252,4331998..4333224, 4333997..4335278) /locus_tag="TCM_043164" /product="Phototropic-responsive NPH3 family protein" /inference="alignment:exonerate- protein:2:ricco:27811.m000085" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022165t1" /inference="similar to AA sequence:ricco:27811.m000085" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2527t1" CDS join(4330512..4330573,4331183..4331252,4331998..4333224, 4333997..4334569) /locus_tag="TCM_043164" /note="dbxref ricco:27811.m000085; paralog of Thecc1EG022165t1" /codon_start=1 /product="Phototropic-responsive NPH3 family protein" /protein_id="EOY18671.1" /db_xref="TAIR:AT5G03250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYW0" /translation="MACIMRLGSKSEAFHLDGQTWLCSTGLSSDVIVEVGEMSFHLHK FPLLSRSRVIENLIKDYSGGDEKKCVLRFHDLPGGAKTFLLVAKFCYGIRFELTALTI VSLRCAAEYLQMSEDHGEGNLITQTENFLNEIFGNWTDSIKALETCEEVLPYAQELHI VSRCINSLAMKACADLSLFGWPMSGSGTAAQSPEDTVLWNGISAAVKPPPVSEDWWYE DVSVLRLSLYKRLILAVESSGIKPERIAGSLVHYAKKHLPLLGRQSSFQNWDHAASGS TVSALCDADQRNLLEEIVALIPNQSGATPINFLLRLLRTSMILHASSSCQEKLEKQIG AQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFVLLDHEAVDSGSNYIVDEGQLM GGSHPMTPMTLVANLVDGYLAEVAPDVNLKLPKFQSLAAVIPDYARPLDDGIYRAIDI YLKAHPWLTDSEREQICRLMNCQKLSLEASTHATQNERLPLRVIVQVLFFEQLRLRTS IAGWFFVSDNLGNSQNPSGNLEIPRNNASAHVGTTQDHFLAVDDIMERVSELEKECLS MKEELEKLVKTKGGWNIFLKKFSFKSKSKSCDPKTAKSSDSKKSKPYDSNTAATASFT NGRGNHNKGESGLQVLKEN" mobile_element complement(4335235..4335308) /note="source:MITE_Tourist_7 253 333" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(4335319..4335375) /note="source:MITE_Tourist_5 145 203" /mobile_element_type="transposon:TIR/MITE" gene complement(4335639..4338141) /locus_tag="TCM_043165" /note="dbxref CacaoGD:Thecc1EG043165" mRNA complement(join(4335639..4336096,4336451..4336553, 4337257..4337379,4338028..4338141)) /locus_tag="TCM_043165" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400016883" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400016883" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4258t1" CDS complement(join(4335851..4336096,4336451..4336553, 4337257..4337379,4338028..4338122)) /locus_tag="TCM_043165" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18672.1" /db_xref="Phytozome:PGSC0003DMP400016883" /db_xref="TAIR:AT1G26750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9NQH0" /translation="MLFMKGDLLTKARKLVKGLAKPEPAWLKAMEQAPPATFPRADGK VKRISLPEDVYTKKFFEKYPESKHEDAIKISSFDPPPARLFGLRVLELKEQGVSEEEA MAVADMEYVTEKKEKKKAYARLKQIARLQGKKPPPNPYASIIKRIQAEEKKFVRDRFF DPETLKIVEKLKEERRAEMQDRMGGDGF" gene 4338328..4341151 /locus_tag="TCM_043166" /note="dbxref CacaoGD:Thecc1EG043166" mRNA join(4338328..4338484,4339613..4339827,4340870..4340996, 4341070..4341151) /locus_tag="TCM_043166" /product="Kinesin like protein" /inference="alignment:exonerate- protein:2:ricco:27811.m000084" /inference="similar to AA sequence:ricco:27811.m000084" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07095t00001" CDS join(4339634..4339827,4340870..4340996,4341070..4341147) /locus_tag="TCM_043166" /note="dbxref ricco:27811.m000084" /codon_start=1 /product="Kinesin like protein" /protein_id="EOY18673.1" /db_xref="TAIR:AT4G14145.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23274" /translation="MTSIEGKIGQPQKTSNRTANTAKVQSSTSSFRRWGRKYPFIRYG LPMISLTVFGAVGLGHLLQGSKDIAKVKDDQEWEIIETRKALSRTGPIDAYNPKKISL EEELKALQVKVDINNYDYKRIPKPNEGKSG" gene complement(4342199..4347927) /locus_tag="TCM_043168" /note="dbxref CacaoGD:Thecc1EG043168" mRNA complement(join(4342199..4344552,4346996..4347927)) /locus_tag="TCM_043168" /product="Zinc finger (C3HC4-type RING finger) family protein" /inference="alignment:exonerate- protein:2:ricco:27811.m000083" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042086t1" /inference="similar to AA sequence:ricco:27811.m000083" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc677t4" CDS complement(join(4342624..4344552,4346996..4347238)) /locus_tag="TCM_043168" /note="dbxref ricco:27811.m000083; paralog of Thecc1EG042086t1" /codon_start=1 /product="Zinc finger (C3HC4-type RING finger) family protein" /protein_id="EOY18674.1" /db_xref="TAIR:AT2G38970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JE23" /translation="MGSKWRKAKLALGLNLCAYLPRTLDDDYSAPPSSERLSDAALLS PSNWESMASSRPMTPVPSSHGLRLSKSLSRRASKSSKQTCSICLTKMKQGGGHAIFTA ECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPMQSPCLNPPPGRATIDPVGWPRNDA LMTVVRRLPPSRRDLSRRHVVPLFQAPEPGIFNDDESLDHQPVIAESKNSSDCSSLRT MEIKTYPEVSAAPRSSSYDNFTILVHLKAAGAVASQNPSRNQASLPQLSQNPRASVDL VTVLDISGSMAGTKLALLKRAMGFVIQNLGCNDRLSVIAFSSTARRLFPLRRMSDIGR QQALQAVNSLVANGGTNIAEGLRKGAKVMEDRREKNPVASIILLSDGQDTYTVNGVGV NKSQPNYQLLVPLSMHGGDNTGFQIPVHAFGFGADHDASSMHSISEISGGTFSFIETE AVIQDAFAQCIGGLLSVVVQELQVGVECMNPSLCLGPLKAGSYPSRVTSDGRTGFIDV GDLYADEERDFLVAVKVPADSSGCDTSLLKVKCIYRDPLTKEMTTLESDAVRIQRPEI AGQEVVSIEVDRQRNRFQAAEAMAEARTTAEQGDLARAVSILENCRRVLSETVSAKSH DRLCIALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDGSSLIQ AYQTPLMVEMLTRSQATLLGSPSTQRLVQPLWSLVSQPKPR" gene complement(4353293..4359621) /locus_tag="TCM_043170" /note="dbxref CacaoGD:Thecc1EG043170" mRNA complement(join(4353293..4353922,4353996..4354124, 4354795..4355169,4355285..4355534,4355877..4355953, 4356088..4356162,4356280..4356381,4356480..4356598, 4357268..4357391,4357470..4357520,4357632..4357730, 4359244..4359432,4359530..4359621)) /locus_tag="TCM_043170" /product="Calcium-dependent lipid-binding (CaLB domain) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022173t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03820.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2533t6" CDS complement(join(4353794..4353922,4353996..4354124, 4354795..4355169,4355285..4355534,4355877..4355953, 4356088..4356162,4356280..4356381,4356480..4356598, 4357268..4357391,4357470..4357520,4357632..4357730, 4359244..4359354)) /locus_tag="TCM_043170" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022173t1" /codon_start=1 /product="Calcium-dependent lipid-binding (CaLB domain) family protein isoform 1" /protein_id="EOY18675.1" /db_xref="Phytozome:POPTR_0008s03820.1" /db_xref="TAIR:AT5G04220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XA06" /translation="MGLLSTLFGIIGFGIGVPFGLLVGFFLFIYSKPKTVMEPIHRPV YELDNSALLDLLPDIPLWVKCPDYDRVDWLNKFVTYMWPYLDKAVCARIRSMTEPIFA EYIGKFQIEAIEFDNLSLGTLPPEIHGLKVCETNENELVMEPAVRWAGNPNIVLVLKL LSFRITLQLVDLQIFAAPRITLKPLVPTLPCFAAVVVSLLEKPEVDFGMTILGGDIMA IPGLYQFVQKTIKKQVASLYHWPQTLEIPILDAATVAVKKPVGILHVKIVRAQKLLKK DILGTSDPYVKLFLTGESLPAKKTTIKKRNLNPEWNEKFKLIVKDPQSQVLHLQVYDW DKVGTHDHLGMQLVPLKTLTPYETTEFNLDLLKHTNIITDPQDKKKRGNIVVELTYAP FREESIKIDGPQDGYGRQESGFDRPSDSELFSGAGLLSVMVQGAEDVEGERHNNPYAV VLFRGETKKTKMIKRTRDPLWNEEFQFMLEEPPLNENIHIDVMSKRTGISFRSKEFLG YVDINLTDVVHNGRINQKYHLINSKNGVIHVEIRWTTV" mRNA complement(join(<4353899..4354124,4354795..4355169, 4355285..4355534,4355877..4355953,4356088..4356162, 4356280..4356381,4356480..4356598,4357268..4357391, 4357470..4357520,4357632..4357730,4359249..4359532)) /locus_tag="TCM_043170" /product="Calcium-dependent lipid-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022173t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03820.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9220t15; alternateUTRof:Thecc1EG043170t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2533t6; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc1095t3" mRNA complement(join(<4353899..4354124,4354795..4355169, 4355285..4355534,4355877..4355953,4356088..4356162, 4356280..4356381,4356480..4356598,4357268..4357391, 4357470..4357730,4359249..4359532)) /locus_tag="TCM_043170" /product="Calcium-dependent lipid-binding family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022173t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03820.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9220t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2533t6; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc1095t3" mRNA complement(join(<4353899..4354124,4354795..4355169, 4355285..4355534,4355877..4355953,4356088..4356162, 4356280..4356381,4356480..4356598,4357268..4357391, 4357470..4357520,4357632..4357730,4357944..4358132, 4359244..4359274)) /locus_tag="TCM_043170" /product="Calcium-dependent lipid-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022173t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03820.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9220t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2533t6; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc1095t3" mRNA complement(join(<4353899..4354124,4354795..4355169, 4355285..4355534,4355877..4355953,4356088..4356162, 4356280..4356381,4356480..4356598,4357268..4357494)) /locus_tag="TCM_043170" /product="Calcium-dependent lipid-binding family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022173t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03820.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9220t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2533t6; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc1095t3" CDS complement(join(<4353900..4354124,4354795..4355169, 4355285..4355534,4355877..4355953,4356088..4356162, 4356280..4356381,4356480..4356598,4357268..4357391, 4357470..4357529)) /locus_tag="TCM_043170" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG022173t1" /codon_start=1 /product="Calcium-dependent lipid-binding family protein isoform 4" /protein_id="EOY18678.1" /db_xref="Phytozome:POPTR_0008s03820.1" /db_xref="TAIR:AT5G04220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XA06" /translation="MMQVDWLNKFVTYMWPYLDKAVCARIRSMTEPIFAEYIGKFQIE AIEFDNLSLGTLPPEIHGLKVCETNENELVMEPAVRWAGNPNIVLVLKLLSFRITLQL VDLQIFAAPRITLKPLVPTLPCFAAVVVSLLEKPEVDFGMTILGGDIMAIPGLYQFVQ KTIKKQVASLYHWPQTLEIPILDAATVAVKKPVGILHVKIVRAQKLLKKDILGTSDPY VKLFLTGESLPAKKTTIKKRNLNPEWNEKFKLIVKDPQSQVLHLQVYDWDKVGTHDHL GMQLVPLKTLTPYETTEFNLDLLKHTNIITDPQDKKKRGNIVVELTYAPFREESIKID GPQDGYGRQESGFDRPSDSELFSGAGLLSVMVQGAEDVEGERHNNPYAVVLFRGETKK TKMIKRTRDPLWNEEFQFMLEEPPLNENIHIDVMSKRTGISFRSKVCNFLHSHCGILS VMLVSQTIFNVGIFGICGY" CDS complement(join(<4353900..4354124,4354795..4355169, 4355285..4355534,4355877..4355953,4356088..4356162, 4356280..4356381,4356480..4356598,4357268..4357391, 4357470..4357490)) /locus_tag="TCM_043170" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022173t1" /codon_start=1 /product="Calcium-dependent lipid-binding family protein isoform 2" /protein_id="EOY18676.1" /db_xref="Phytozome:POPTR_0008s03820.1" /db_xref="TAIR:AT5G04220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XA06" /translation="MWPYLDKAVCARIRSMTEPIFAEYIGKFQIEAIEFDNLSLGTLP PEIHGLKVCETNENELVMEPAVRWAGNPNIVLVLKLLSFRITLQLVDLQIFAAPRITL KPLVPTLPCFAAVVVSLLEKPEVDFGMTILGGDIMAIPGLYQFVQKTIKKQVASLYHW PQTLEIPILDAATVAVKKPVGILHVKIVRAQKLLKKDILGTSDPYVKLFLTGESLPAK KTTIKKRNLNPEWNEKFKLIVKDPQSQVLHLQVYDWDKVGTHDHLGMQLVPLKTLTPY ETTEFNLDLLKHTNIITDPQDKKKRGNIVVELTYAPFREESIKIDGPQDGYGRQESGF DRPSDSELFSGAGLLSVMVQGAEDVEGERHNNPYAVVLFRGETKKTKMIKRTRDPLWN EEFQFMLEEPPLNENIHIDVMSKRTGISFRSKVCNFLHSHCGILSVMLVSQTIFNVGI FGICGY" CDS complement(join(<4353900..4354124,4354795..4355169, 4355285..4355534,4355877..4355953,4356088..4356162, 4356280..4356381,4356480..4356598,4357268..4357391, 4357470..4357490)) /locus_tag="TCM_043170" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022173t1" /codon_start=1 /product="Calcium-dependent lipid-binding family protein isoform 2" /protein_id="EOY18677.1" /db_xref="Phytozome:POPTR_0008s03820.1" /db_xref="TAIR:AT5G04220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XA06" /translation="MWPYLDKAVCARIRSMTEPIFAEYIGKFQIEAIEFDNLSLGTLP PEIHGLKVCETNENELVMEPAVRWAGNPNIVLVLKLLSFRITLQLVDLQIFAAPRITL KPLVPTLPCFAAVVVSLLEKPEVDFGMTILGGDIMAIPGLYQFVQKTIKKQVASLYHW PQTLEIPILDAATVAVKKPVGILHVKIVRAQKLLKKDILGTSDPYVKLFLTGESLPAK KTTIKKRNLNPEWNEKFKLIVKDPQSQVLHLQVYDWDKVGTHDHLGMQLVPLKTLTPY ETTEFNLDLLKHTNIITDPQDKKKRGNIVVELTYAPFREESIKIDGPQDGYGRQESGF DRPSDSELFSGAGLLSVMVQGAEDVEGERHNNPYAVVLFRGETKKTKMIKRTRDPLWN EEFQFMLEEPPLNENIHIDVMSKRTGISFRSKVCNFLHSHCGILSVMLVSQTIFNVGI FGICGY" CDS complement(join(<4353900..4354124,4354795..4355169, 4355285..4355534,4355877..4355953,4356088..4356162, 4356280..4356381,4356480..4356598,4357268..4357367)) /locus_tag="TCM_043170" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG022173t1" /codon_start=1 /product="Calcium-dependent lipid-binding family protein isoform 5" /protein_id="EOY18679.1" /db_xref="Phytozome:POPTR_0008s03820.1" /db_xref="TAIR:AT5G04220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XA06" /translation="MTEPIFAEYIGKFQIEAIEFDNLSLGTLPPEIHGLKVCETNENE LVMEPAVRWAGNPNIVLVLKLLSFRITLQLVDLQIFAAPRITLKPLVPTLPCFAAVVV SLLEKPEVDFGMTILGGDIMAIPGLYQFVQKTIKKQVASLYHWPQTLEIPILDAATVA VKKPVGILHVKIVRAQKLLKKDILGTSDPYVKLFLTGESLPAKKTTIKKRNLNPEWNE KFKLIVKDPQSQVLHLQVYDWDKVGTHDHLGMQLVPLKTLTPYETTEFNLDLLKHTNI ITDPQDKKKRGNIVVELTYAPFREESIKIDGPQDGYGRQESGFDRPSDSELFSGAGLL SVMVQGAEDVEGERHNNPYAVVLFRGETKKTKMIKRTRDPLWNEEFQFMLEEPPLNEN IHIDVMSKRTGISFRSKVCNFLHSHCGILSVMLVSQTIFNVGIFGICGY" mobile_element 4360906..4362279 /note="source:CACAO_M_E14787_F15_scaffold_3 410 1782" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4370161..4371802) /locus_tag="TCM_043173" /note="dbxref CacaoGD:Thecc1EG043173" mRNA complement(join(4370161..4370457,4370567..4370637, 4371537..4371802)) /locus_tag="TCM_043173" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage" CDS complement(join(4370369..4370457,4370567..4370637, 4371537..4371667)) /locus_tag="TCM_043173" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18680.1" /translation="MLIPANSVTKVQLILDGFPVLSPNIHPSSLTISWRSSMTKRTVN VPRRKKFPLICSEEAEGFQKCRKVNGLKSENPEFQFHQIKKPKPKELMWVGY" gene complement(4372803..4378896) /locus_tag="TCM_043174" /note="dbxref CacaoGD:Thecc1EG043174" mRNA complement(join(4372803..4373459,4373564..4374076, 4374198..4374732,4378734..4378896)) /locus_tag="TCM_043174" /product="Pectin lyase-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400001777" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043175t1" /inference="similar to AA sequence:Phytozome:GSVIVT01020794001" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2542t2" CDS complement(join(4373223..4373459,4373564..4374076, 4374198..4374650)) /locus_tag="TCM_043174" /note="paralog of Thecc1EG043175t1" /codon_start=1 /product="Pectin lyase-like superfamily protein, putative" /protein_id="EOY18681.1" /db_xref="Phytozome:GSVIVT01020794001" /db_xref="TAIR:AT3G07820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H559" /translation="MAVELNVLALSLLFLLASNAKAQPNNGVFDVMNFGAKAGGKTDI SQALMAAWREACALVSPSKVVIPEGEYVLSQVTLAGPCKAPVEVQVRGNLKAPADPSK FNNVPSWVTFQRIDHFTLSGAGTFDGQGGYAAWAQNDCKQSKKCNKLPINIRFNFVTN GLVRDITSVDSKQFHINLLGCKNLTFANITINAPDQSPNTDGIHIGRSSGIDITDSRI STGDDCISLGGGSQNITISRVTCGPGHGISVGSLGKYKDEPVFGINVVNCALINTSNG VRVKTWPASLEGIASDMHFEDIVMVNVSNPVLIDQEYCPSNKCNLKAPSRVKISNVSF KNIRGTSATQVAVKLACSSGIPCENVEIGDINLSYIGTKGPATSQCSNVKPTIAGRQT PLACGLIV" gene complement(4377457..4380941) /locus_tag="TCM_043175" /note="dbxref CacaoGD:Thecc1EG043175" mRNA complement(join(4377457..4377619,4379183..4379688, 4379802..4380311,4380432..4380941)) /locus_tag="TCM_043175" /product="Pectin lyase-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400050225.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043174t1" /inference="similar to AA sequence:Phytozome:GSVIVT01020794001" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2542t3" CDS complement(join(4379452..4379688,4379802..4380311, 4380432..4380884)) /locus_tag="TCM_043175" /note="paralog of Thecc1EG043174t1" /codon_start=1 /product="Pectin lyase-like superfamily protein, putative" /protein_id="EOY18682.1" /db_xref="Phytozome:GSVIVT01020794001" /db_xref="TAIR:AT3G07820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H559" /translation="MAVELNVLALSLFFLLAPNAKAQSNNGVFDVMNFGAKADGKTDI SQALMAAWRKACAVVSPSKVVIPEGEYILSQVTLAGPCKAPLEVQVRGTLKATADPSK FNNVPTWVTFQRIDRFTLSGAGTFDGQGGKAAWAQNDCKQVGRCNKLPINLRFNAVTN GLVRDITSVDSKQTHINLLSCKNLTFANITVNAPAQSPNTDGIHIGRSSGINITDSRI STGDDCVSLGEGSQKITVRRVTCGPGHGISVGSLGRYREDPVFGITVANCTLINTSNG VRVKTWPASLEGIASDMHFEDIVMVNVSNPVLIDQEYCPGNKCAKAPSRVKISNVSFK NIRGTSATQVAVELRCSSGIPCENVEIGDINLSYIGTEGPATSRCSNVKPIITGKQTP LACGLAV" mobile_element complement(4381269..4381291) /note="source:CACAO_M_E44210_F112_scaffold_5 12799 12955" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4381292..4381398 /note="source:CACAO_M_E58877_F5_scaffold_9 5279 5395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4381399..4383867) /note="source:CACAO_M_E44210_F112_scaffold_5 10461 12913" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4384089..4385366 /note="source:INTACT700_F304_scaffold_7-int 15042 16105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4385367..4385810) /note="source:INTACT579_F10_scaffold_3-int 4490 4928" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4385811..4385821 /note="source:INTACT700_F304_scaffold_7-int 16106 16115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4386749..4386994 /note="source:INTACT700_F304_scaffold_7-int 2657 2880" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4390188..4393199 /note="source:CACAO_M_E69760_F9_scaffold_9 6706 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4396889..4396992 /note="source:INTACT296_F13_scaffold_9-int 13162 13256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4397497..4398509) /note="source:CACAO_M_E85248_F10_scaffold_10 2546 3558" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4398786..4401330) /note="source:CACAO_M_E85248_F10_scaffold_10 1 2545" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4405246..4405342) /note="source:INTACT296_F13_scaffold_9-int 13190 13287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4406355..4406683 /note="source:scaffold_10_CACTA_0130 6253 6574" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4406700..4407187 /note="source:scaffold_10_CACTA_0130 8380 8981" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4407188..4407539) /note="source:CACAO_on_E565_scaffold_5 757 1135" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4407540..4408043 /note="source:scaffold_10_CACTA_0130 8982 9606" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4407872..4408070) /note="source:CACAO_PIF_E62_scaffold_2 7073 7267" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4408248..4408279) /note="source:CACAO_M_S_E50888_F253_scaffold_4 3423 3454" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4408255..4411742 /note="source:INTACT561_F253_scaffold_5-int 1387 5187" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4417607..4417695 /note="source:scaffold_6_CACTA_0712 1397 1485" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4417703..4417713) /note="source:scaffold_5_CACTA_0584 1891 2011" /mobile_element_type="transposon:TIR/CACTA" gene 4420707..4425612 /locus_tag="TCM_043179" /note="dbxref CacaoGD:Thecc1EG043179" mRNA join(4420707..4421100,4422579..4424922,4425236..4425612) /locus_tag="TCM_043179" /product="Phenylalanine ammonia-lyase 2" /inference="alignment:exonerate- protein:2:ricco:29638.m000502.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022179t1" /inference="similar to AA sequence:ricco:28507.m000156" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7658t25" CDS join(4420709..4421100,4422579..4424328) /locus_tag="TCM_043179" /note="dbxref ricco:28507.m000156; paralog of Thecc1EG022179t1" /codon_start=1 /product="Phenylalanine ammonia-lyase 2" /protein_id="EOY18683.1" /db_xref="TAIR:AT3G53260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P35510" /translation="MDPMEVLPQCNGNGSPGFCITDPLNWGASAESLKGSHLDEVKRM VEEFRKPVVRLGGETLTIAQVAAIANRDAGVKVELSEAARPAVKASSDWVMEGMNRGT DSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGVFGQGTESCHTLPHTATRAAMLVR INTLLQGYSGIRFEILEAITKLLNVNITPCLPLRGTITASGDLVPLSYIAGLLTGRPN SKAVGPKGEALNPTEAFSRAGINGGFFELQPKEGLALVNGTAVGSGLASLVLFEANVQ AVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAQKL HEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRDKAL HGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDYYNNGLPSNLSASRNPSLDY GFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLM SSTFLIALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGSNGELHPSRFCEKDLLRV VDREYLYAYVDDPCSATYPLMQKLRQVLVDHALMNGDREKNSTTSIFQKIGAFEEELK TLLPKEVEGARIEFENGNAAIPNRIEECRSYPLYKFVREVLGTSLLTGEKVISPGEEC DKVFSAMCAGKLIDPLLECLKEWNGAPLPIC" mobile_element complement(4426355..4426592) /note="source:INTACT383F_F354_scaffold_3-int 871 1089" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 4426943..4431825 /locus_tag="TCM_043180" /note="dbxref CacaoGD:Thecc1EG043180" mRNA join(4426943..4427119,4427619..4427672,4427962..4428008, 4428152..4428183,4428277..4428378,4428455..4428522, 4429179..4429255,4429368..4429465,4429584..4429654, 4429735..4429801,4429906..4430089,4431044..4431825) /locus_tag="TCM_043180" /product="Adenosine kinase 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037351" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022183t1" /inference="similar to AA sequence:ricco:28507.m000157" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc155t9" CDS join(4427037..4427119,4427619..4427672,4427962..4428008, 4428152..4428183,4428277..4428378,4428455..4428522, 4429179..4429255,4429368..4429465,4429584..4429654, 4429735..4429801,4429906..4430089,4431044..4431186) /locus_tag="TCM_043180" /note="dbxref ricco:28507.m000157; paralog of Thecc1EG022183t1" /codon_start=1 /product="Adenosine kinase 2" /protein_id="EOY18684.1" /db_xref="TAIR:AT5G03300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DZE5" /translation="MAYEGILLGMGNPLLDISAVVDEDFLNKYDIKLNNAILAEDKHL PMYEEMANKYDVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKNSKL AGVNVHYYEDETAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPENWALVEKAKY FYIAGFFLTVSPESIQLVAEHAAAKNKVFMMNLSAPFICEFFRDVQEKALPYMDYVFG NETEARTFSKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVK LFPVVLLPKEKLVDTNGAGDAFVGGFLSQLVQEKPIEECIRAGCYAANVIIQRSGCTY PEKPNFS" gene complement(4432298..4433237) /locus_tag="TCM_043181" /note="dbxref CacaoGD:Thecc1EG043181" mRNA complement(4432298..4433237) /locus_tag="TCM_043181" /product="SAUR family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene23257" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022186t1" /inference="similar to AA sequence:frave:gene23257" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage" CDS complement(4432601..4433002) /locus_tag="TCM_043181" /note="dbxref frave:gene23257; paralog of Thecc1EG022186t1" /codon_start=1 /product="SAUR family protein, putative" /protein_id="EOY18685.1" /db_xref="TAIR:AT2G37030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLJ7" /translation="MRAITHGTMKSKGLRKCLCKCRNVGASVLKYTIWGHIRDWSIWS CLHEEVYIPVDVPRGHLVVYVGEDCKRFVIKISLLEHPLFKALLDRAEEVFDFSASSK LCIPCDENIFTIILQCVAASQQQDQRPQFCF" gene 4434882..4438781 /locus_tag="TCM_043182" /note="dbxref CacaoGD:Thecc1EG043182" mRNA join(4434882..4435573,4435952..4435987,4436084..4436189, 4436272..4436554,4436645..4436800,4436920..4436978, 4437242..4437844,4437938..4438781) /locus_tag="TCM_043182" /product="Transketolase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23150.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005533t1" /inference="similar to AA sequence:ricco:28507.m000160" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc21183t5" CDS join(4435120..4435573,4435952..4435987,4436084..4436189, 4436272..4436554,4436645..4436800,4436920..4436978, 4437242..4437844,4437938..4438091) /locus_tag="TCM_043182" /note="dbxref ricco:28507.m000160; paralog of Thecc1EG005533t1" /codon_start=1 /product="Transketolase, putative" /protein_id="EOY18686.1" /db_xref="TAIR:AT3G60750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUH2" /translation="MPSLLFPPQPSLLPRSELFSLIPKETTKTSKRSRFNTSSPVVLP KPTLSTGQKASRNTIYSHGNKNSNKSEENFDDNNINDASPEDLVDRRCVDNLRMLTVD AVQSAKAGHPGMPLGMAEVGYVPYRHVMRYNPKHPKWFNRDRFVLIAGHEKIVTDGVE VTTGPRGQGVANAVGLALAEAHLAARFNKPDAVIVDHRTYCLMGDGCAMEGITLEAAS LAAHWKLNKLTLFYDDNQNTIDGPTSLAFSEDISVRFKALCWNTITVDNLYDDIGTFK DALHSAFSETETPTFIKVKTVIGKLSEKEGTSRAHHGMFDEDDMTNMKEKVNWVREEQ PFHVIPTVYRFEMQLQAERGEELEREWYSKLCLNQLAKVLPGLIGGSADLATANKAYL HDYQDFCQPDAPWGCNICYGVREHAMAGISNGIALHGSGLIPFTATFLVFSDYMKNSI RLSALSHAGVIYILTHDLIGLGEDGPTHQLVERLAGLRAVPRLLVFRPADGNETAEAY KIAIANRDSPSFIALSRQKVSPNLEGTSADKVDRGGYIVSDNSGKEMPKIILIGTGTQ LPMEHKELVLPSSVRKRLRVEAGSPMSWREYVGDEGAVIATEKFGASGAY" gene 4446099..4456856 /locus_tag="TCM_043183" /note="dbxref CacaoGD:Thecc1EG043183" mRNA join(4446099..4447662,4447986..4448064,4448266..4448333, 4449265..4449415,4450020..4450591,4452079..4452276, 4452649..4455968,4456247..4456856) /locus_tag="TCM_043183" /product="Zinc finger family protein / transcription factor jumonji family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23160.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23160.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7737t6" CDS join(4446513..4447662,4447986..4448064,4448266..4448333, 4449265..4449415,4450020..4450591,4452079..4452276, 4452649..4455173) /locus_tag="TCM_043183" /codon_start=1 /product="Zinc finger family protein / transcription factor jumonji family protein, putative" /protein_id="EOY18687.1" /db_xref="Phytozome:POPTR_0010s23160.1" /db_xref="TAIR:AT5G04240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6BDA0" /translation="MGNVEIPNWLQGLPLAPEFRPTDTEFADPIAYISKIEKEAAAYG ICKIIPPLPKPSKKYVFNNLNRSLSKCPELGSDMDVSKNVGSISSCRDSRGEEGEGRA VFTTRHQELGQSGKKMKVAVSSPQCGVHKQVWQSGEIYTLEQFESKSKTFAKSLLGVL KEVSPLHIEALFWKVASEKPINVEYANDVPGSGFGEPEGQFRYFHRRRRRRKRMSYRR ENADCKKDEMNTVHNSHIDEIKDTCVKSDQNAWFETPKISTTSSTLASDENSLSKRKS GNASNDMEGTAGWKLSNSPWNLQVIARSAGSLTRFMPDDIPGVTSPMVYIGMLLSWFA WHVEDHELHSMNFLHTGSSKTWYAVPGDYAYAFEEVIRTEAYGGNIDRLAALSLLGEK TTLLSPELIVASGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLQV AKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRSLLPGARSSRLRDRQKEERELL VKKAFIEDMLTENKLLSLLLKRGSTYRAIIWDPDLLPYASKDSELPSETAAVSTVLQE NVSDIHSKNNTNQNNLLDEMSLYMENLNYLYLNDDDLSCDFQVDSGTLACVACGILGY PFMSVVQPSEGTLELLPADHLSVLGSAVLESKNTHSCPDLDHPVECSVSDNVHHVADQ SLPSKDATSPSITKFCHVWDTSNIYMRPRIFCLEHAVQVEEILQSKGGAKMLVICHSD YQKIKAHAIPVAEDIGITFNYNDVPLDAASQEDLNLINLAIDDEHDEIGEDWTSKLGV NLRYCVKVRKNSPFKQVQHALPLGGLFSDKYGSPELFNIKWQSRKSRSKGKLSHPSSK PCESVELKVGELLLEKLDGNIPKSEQKIIQYSRRKKRKPDYSTGAGGCLELVKDDLPR EDSAATCELPDEHGGSKSKINAKSDSSVLFSSLSTRASQTQPEIQTTSVVGVVQKDHG KILQESNLNGEGCSLAACASSQKQCEIKLMERTSENNELSLADKCSKFSVFAAGERFK ESTGAICEVCNPVYEGQCEELAARHDLINLANSANSLSAQPSAGRFDPVLEDLIVEKS CMNGGVHSCMTSDNEVQQEIEATSRNNNEDILCDNKLINKPNLGPEDFSSGVSLGDEA QQETNTRGGSQVEPFFSSPTLTKGPSTVMVGNRSDVPREPCTAADLCDVAISKDKAKK QEIQIDASKEGLLCGSITPMVIDQRTSLSVEEYSVVSKNPCANELHTGVISDVEVLQE IQATKGTSGDEVIYCYHLPIKEKQPTPTVMEACSKVQRMCSSEKKSCADATADDDRHE NDLIRNEKDEEEPVSCCVIPINQATPVPIQRYSRTRRESRATVNVNNGEVCSFVENRD LESAVVNCRSSATDGRKRKREVVEKPEKVGGSGFIRSPCEGLRPRARKDASSSFDVGK TSQEVLPTKETRKPSIHTQSKKIIKKGSHRCDMEGCHMSFETKEELRLHKRNRCPYEG CGKRFRSHKYAILHQRVHEDDRPLKCPWKGCSMTFKWAWARTEHIRVHTGERPYKCKV VGCGLSFRFVSDFSRHRRKTGHYVDSSA" gene complement(4455606..4456755) /locus_tag="TCM_043184" /note="dbxref CacaoGD:Thecc1EG043184" mRNA complement(4455606..4456755) /locus_tag="TCM_043184" /product="Acyl-CoA N-acyltransferases (NAT) superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g15250.1" /inference="similar to AA sequence:TAIR:AT2G39020.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9038t5_C1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9038t5_C2" CDS complement(4455983..4456690) /locus_tag="TCM_043184" /codon_start=1 /product="Acyl-CoA N-acyltransferases (NAT) superfamily protein" /protein_id="EOY18688.1" /db_xref="TAIR:AT2G39020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZV06" /translation="MAAAAPPPPPSAAPEPSMAPPETTPLGHPLFTRIRLAAPSDVPF IHKLIHQMAVFERLTHLFTATESSLHSTLFRSPPFDSFTIFILEVSSTPIPPLPSIYP SFTSIEKTFNFDIPINDPEEDAFTVNFGKDQIIIAGFVLFFPNYSTFLGKPGFYVEDL FVRQCYRRKGFGKMLLSAVAKQAVKMGYGRVEWVVLDWNINAIKFYEQMGAKVLPDWR ICRLTGDALQAYENANV" gene complement(4458259..4459727) /locus_tag="TCM_043185" /note="dbxref CacaoGD:Thecc1EG043185" mRNA complement(4458259..4459727) /locus_tag="TCM_043185" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043203t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(4458368..4459606) /locus_tag="TCM_043185" /note="paralog of Thecc1EG043203t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18689.1" /translation="MMFYPPAPGVVFNPSDREIVSFFLPKLMSGEGIGELSYLIEFCD LYCIKPAALFDVNKGFLPFVKPNQRFVFTHRQKISQKNANGKRPRRVLDSRAAGDGGF WRSSTGEKPILDKQGEHVIGYVNTLNFYEYKGEKRSPKDATKTSWLMHEYRLPGENFQ EWVICKIKDTACSEEDKCVAFWVKELFGNLLLGNKECPSSALMQEAVFSGNLPLPDDG QCDPLIDNYVDGRLQQSENLECQSSILVEGSESLVNGFGEMDSNGLVGEGYSLMDQLL DEDPFNEVDQLLGISNNDQISNLDELVIDKSVDELLREYEALIDGDCLKEVDQLPGIS NNNESSKSVEPVIVTGKNVDELSGGYEELNYDDSFKEVDQLWGISNTDENSKLDELFT DKDVDDIHALLAFDHLPPLE" gene 4459896..4463669 /locus_tag="TCM_043186" /note="dbxref CacaoGD:Thecc1EG043186" mRNA join(4459896..4459984,4460814..4461437,4463283..4463669) /locus_tag="TCM_043186" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027272t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017369001" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage" CDS join(4459928..4459984,4460814..4461377) /locus_tag="TCM_043186" /note="paralog of Thecc1EG027272t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18690.1" /db_xref="Phytozome:GSVIVT01017369001" /translation="MAADSTISPSDHQALSPVLIEEGSQNSEQLFKDDGNELEIEGND LEIEGRDIDIESNGLEIEGNGLDIESNGLQDCVQMLEIEDNHEIDGNDTTSVVVENDI SQGKDYPPPAVGMEFESYDDAYNYYNCYAKELGIAIRVKSAMLSISKKLCSCTMHLLN YFCAGCLFVLASAGFCADSLPTYTWFSSNGVVGSKRMSCIFQLLPF" gene complement(4462046..4464557) /locus_tag="TCM_043187" /note="dbxref CacaoGD:Thecc1EG043187" mRNA complement(join(4462046..4462308,4462567..4462715, 4462898..4463032,4463970..4464557)) /locus_tag="TCM_043187" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043204t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03690.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage" CDS complement(join(4462176..4462308,4462567..4462715, 4462898..4463032,4463970..4463972)) /locus_tag="TCM_043187" /note="paralog of Thecc1EG043204t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative" /protein_id="EOY18691.1" /db_xref="Phytozome:POPTR_0008s03690.1" /db_xref="TAIR:AT3G10350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS46" /translation="MVMAVSESSRLRASLEKENVPVRRLIANQILHPPASDCKFCAVK RKDQTRALDMIRNDPELFSLKLIQAPLVDMEIRGVPALKIMGDIVWKLATTSFLIILD REFSGNMKMTIHKESILQYYKSSIREARGFDIKLPVA" mobile_element 4463266..4464524 /note="source:INTACT37_F117_scaffold_2-int 215 1469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4463876..4465305) /note="source:CACAO_M_E23991_F4_scaffold_4 7765 9150" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4465541..4466072) /note="source:INTACT551_F248_scaffold_7-int 785 1312" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4466073..4466086 /note="source:CACAO_M_E57097_F245_scaffold_8 5943 5957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4466087..4468881) /note="source:CACAO_M_E85247_F244_scaffold_10 1 2795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4468882..4468957 /note="source:CACAO_M_E12297_F14_scaffold_3 19968 20051" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4469770..4469904 /note="source:CACAO_M_E8_F73_scaffold_1 3494 3628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4470659..4472355 /note="source:CACAO_M_E41756_F85_scaffold_5 1 1701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4472221..4472369) /note="source:INTACT734_F317_scaffold_4-int 1549 1709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4472564..4473628 /note="source:CACAO_M_E53587_F207_scaffold_8 10902 11967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4475204..4475371 /note="source:CACAO_M_E14040_F82_scaffold_3 1684 1851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4476459..4476833) /note="source:CACAO_M_E49332_F85_scaffold_7 1 375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4476711..4476847) /note="source:scaffold_9_CACTA_0941 4143 4272" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4492229..4492638) /note="source:scaffold_9_CACTA_0941 1644 2051" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4492639..4493105) /note="source:CACAO_M_E35137_F82_scaffold_5 2818 3284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4493106..4493882) /note="source:CACAO_M_E36044_F82_scaffold_5 2528 3302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4494126..4495282) /note="source:CACAO_M_E53587_F207_scaffold_8 9794 10949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4495401..4495716 /note="source:scaffold_8_CACTA_0858 10751 11066" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4495817..4496357) /note="source:CACAO_M_E52985_F33_scaffold_8 2044 2584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4496458..4498486) /note="source:CACAO_M_E12297_F14_scaffold_3 6346 8371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4498487..4499745 /note="source:CACAO_M_E53587_F207_scaffold_8 19060 20328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4499566..4499764) /note="source:CACAO_M_E53587_F207_scaffold_8 8536 8738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4502657..4502979) /note="source:scaffold_9_CACTA_0941 1322 1650" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4502978..4503565) /note="source:CACAO_M_E44425_F33_scaffold_6 17502 18089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4503666..4504724) /note="source:CACAO_M_E23070_F33_scaffold_4 1 1080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4504725..4506128) /note="source:scaffold_9_CACTA_0941 1 1620" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4506411..4507613) /note="source:CACAO_M_E44899_F328_scaffold_6 2006 3195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4507615..4513114) /note="source:INTACT359_F73_scaffold_2-int 1724 7226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4514611..4516484 /note="source:CACAO_M_E59103_F82_scaffold_9 1085 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4516363..4516497) /note="source:CACAO_M_E84995_F60_scaffold_10 2388 2523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4516501..4516681 /note="source:INTACT444_F216_scaffold_4-int 5704 5884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4516682..4519959) /note="source:CACAO_M_E85228_F82_scaffold_10 1 3278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4519869..4519971) /note="source:CACAO_M_S_E5285_F300_scaffold_1 6621 6725" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4519960..4522724 /note="source:CACAO_M_E4417_F33_scaffold_2 171 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4522650..4522744) /note="source:CACAO_M_E12297_F14_scaffold_3 13983 14081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4522719..4522767 /note="source:CACAO_M_E33225_F73_scaffold_4 1006 1055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4522723..4524435) /note="source:CACAO_M_E44306_F73_scaffold_6 1 1712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4524436..4524635 /note="source:CACAO_M_E52617_F328_scaffold_7 1171 1370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4524636..4527587 /note="source:CACAO_M_E59204_F33_scaffold_9 1 2950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4527588..4528830) /note="source:INTACT774_F328_scaffold_5-int 1987 3229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4528831..4529130) /note="source:INTACT774_F328_scaffold_5-int 12252 12552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4530257..4531320) /note="source:CACAO_M_E22484_F328_scaffold_3 5640 6711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4531421..4534736) /note="source:INTACT774_F328_scaffold_5-int 6951 12084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4533634..4535872 /note="source:CACAO_M_E45364_F328_scaffold_6 3352 5567" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4535870..4539021 /note="source:CACAO_M_E5627_F4_scaffold_2 10374 13532" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4539022..4541977) /note="source:CACAO_M_S_E145514_F33_scaffold_10 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4543963..4544609 /note="source:scaffold_5_CACTA_0611 8762 9412" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4545836..4546119 /note="source:scaffold_5_CACTA_0611 9383 9667" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4547069..4547211 /note="source:scaffold_5_CACTA_0611 15612 15766" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4547083..4547205) /note="source:scaffold_4_CACTA_0495 8415 8532" /mobile_element_type="transposon:TIR/CACTA" gene complement(4550730..4551474) /locus_tag="TCM_043194" /note="dbxref CacaoGD:Thecc1EG043194" mRNA complement(join(4550730..4551298,4551401..4551474)) /locus_tag="TCM_043194" /product="Serine protease inhibitor" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018139001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046960t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc859t5" CDS complement(join(4551105..4551298,4551401..4551422)) /locus_tag="TCM_043194" /note="paralog of Thecc1EG046960t1" /codon_start=1 /product="Serine protease inhibitor" /protein_id="EOY18692.1" /translation="MASDECKGKSSWPELVGKKGEDAAARIEKENPHVNAVIVLEGSF VTADFLCTRVRVWVNTYGIVTRVPTIG" gene complement(4551521..4554411) /locus_tag="TCM_043195" /note="dbxref CacaoGD:Thecc1EG043195" mRNA complement(join(4551521..4551724,4553019..4554411)) /locus_tag="TCM_043195" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043185t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage" CDS complement(4553178..4554299) /locus_tag="TCM_043195" /note="paralog of Thecc1EG043185t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18693.1" /translation="MMFHPPAPGVVFNPSDRVIVSLFLPKLMTGEGIGELSYLIEFCD LYCMKPAALFDVNKGFLPFVKPNQRFVFTYRQKISQKNANGKRPRRVLDSRAAGDGGF WRSSTGEKPILDEQGEHVIGYVNTLNFYEYKGEKRSSKDANKTSWLMHEYRLPGENFQ EWVICKIKDTACLEKDECVAFWVKELFGNLLLGNKECPPSALMQEAVFSGNLPLPDDG QCDPLIDNYVDGRLQQSENLECQSSILVEGSESLVNGFGEMESNGLVGEGYSLMDQLR DEDPFNEVDQLLGISNNDQISNLDELVIDKSVDKLLREYEALIDGDCLKELDQLHGIS NNNEISKSVEPVTDSNVDELLGGYEELNDDESFKKLDQL" gene complement(4559293..4559803) /locus_tag="TCM_043196" /note="dbxref CacaoGD:Thecc1EG043196" mRNA complement(join(4559293..4559644,4559740..4559803)) /locus_tag="TCM_043196" /product="Serine protease inhibitor" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s08600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043201t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2609t1" CDS complement(join(4559451..4559644,4559740..4559761)) /locus_tag="TCM_043196" /note="paralog of Thecc1EG043201t1" /codon_start=1 /product="Serine protease inhibitor" /protein_id="EOY18694.1" /translation="MASDECQGKSSWPELLGAKGEEAAATIERENPNVNAVIVSEGSF VTPDFLCTRVRVWVNTDGIVTRVPVIG" gene complement(4561388..4562015) /locus_tag="TCM_046959" /note="dbxref CacaoGD:Thecc1EG046959" mRNA complement(join(4561388..4561840,4561943..4562015)) /locus_tag="TCM_046959" /product="Serine protease inhibitor" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g34820.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046960t1" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g18136t00001" CDS complement(join(4561647..4561840,4561943..4561964)) /locus_tag="TCM_046959" /note="paralog of Thecc1EG046960t1" /codon_start=1 /product="Serine protease inhibitor" /protein_id="EOY18695.1" /translation="MASDECKGKSSWPELVGKKGEDAAARIEKENPHVNAVIVLEGSF VTADFLCTRVRVWVNTYGIVTRVPIIG" gene complement(4565525..4580115) /locus_tag="TCM_043198" /note="dbxref CacaoGD:Thecc1EG043198" mRNA complement(join(4565525..4565667,4579707..4579940, 4580043..4580115)) /locus_tag="TCM_043198" /product="Serine protease inhibitor" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g34820.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046959t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01638t00001" gene complement(4565536..4566082) /locus_tag="TCM_046960" /note="dbxref CacaoGD:Thecc1EG046960" mRNA complement(join(4565536..4565902,4566005..4566082)) /locus_tag="TCM_046960" /product="Serine protease inhibitor, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g34820.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046959t1" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g18136t00001" CDS complement(join(4565709..4565902,4566005..4566026)) /locus_tag="TCM_046960" /note="paralog of Thecc1EG046959t1" /codon_start=1 /product="Serine protease inhibitor, putative" /protein_id="EOY18697.1" /translation="MASDECKGKSSWPELVGKKGEDAAARIEKENPHVNAVIVLEGSF VTADFLCTRVRVWVNTYGIVTRVPMIG" gene complement(4569862..4571608) /locus_tag="TCM_043199" /note="dbxref CacaoGD:Thecc1EG043199" mRNA complement(join(4569862..4570446,4570579..4571608)) /locus_tag="TCM_043199" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043185t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(4570667..4571497) /locus_tag="TCM_043199" /note="paralog of Thecc1EG043185t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18698.1" /translation="MMFHPPAPGVVFNPSDREIVSFFLPKLMTGEGIDELSYLIEFCD LYCIKPDALFDVNKGFLPFVKPNQRFVFTHRQKISQKNANGKRPRRVLDSRAVGDGGF WRSSTGEKPILDEQGEHVIGYVNTLNFYEYKGEKRNPKDATKTSWLMHEYRLPRENFQ EWVICKIKDTACSEEDKCVAFWVNELFGNLFLGNKECPSSALMQEAVFSGNLPLLDDG QCRPWVDNYVDGRLQQSENLECQSSILVERSESRVNGFGEMDSNGLVGEGDLDGSVTG " gene complement(4571666..4575638) /locus_tag="TCM_043200" /note="dbxref CacaoGD:Thecc1EG043200" mRNA complement(join(4571666..4571983,4572563..4572699, 4574016..4574166,4574437..4574571,4575450..4575638)) /locus_tag="TCM_043200" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="similar to AA sequence:Phytozome:POPTR_0008s03690.1" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS complement(join(4571720..4571983,4572563..4572699, 4574016..4574166,4574437..4574571,4575450..4575608)) /locus_tag="TCM_043200" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY18699.1" /db_xref="Phytozome:POPTR_0008s03690.1" /db_xref="TAIR:AT3G10350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS46" /translation="MDYYGIKITGGQGQSSLKPTLCGHQKPVLTVSWSPDDSQILTCG QEEGMRPWDVMAVSELSRLRTFLEMENVPVRRLIVNQILHPSASDCKFCAVKRKHQMR ALNMIHNDPELSSLKLNQAPLVDMEIGGAPALKIVGDIVYGNKQPPGTPVYPPCPAET KKPILSLFTSEPDKPALTGEKEPKQQTRPQNNILELKPKTCRGGANYNLTGETWELEG RLRGGRYRDGRQGLVVAGRDPDIGGHGWSEGEVPCFSVLVPSRNFHSKADQETIRSSA TKFQI" gene complement(4576505..4577038) /locus_tag="TCM_043201" /note="dbxref CacaoGD:Thecc1EG043201" mRNA complement(join(4576505..4576863,4576959..4577038)) /locus_tag="TCM_043201" /product="Serine protease inhibitor" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g32820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043196t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07970.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4310t1" CDS complement(join(4576670..4576863,4576959..4576980)) /locus_tag="TCM_043201" /note="paralog of Thecc1EG043196t1" /codon_start=1 /product="Serine protease inhibitor" /protein_id="EOY18700.1" /db_xref="Phytozome:POPTR_0016s07970.1" /translation="MASDECQGKSSWPELLGAKGEEAAATIERENPNVNAVIVLEGSF VTPDFLCTRVRVWVNTDGIVTRVPVIG" CDS complement(join(4579747..4579940,4580043..4580064)) /locus_tag="TCM_043198" /note="paralog of Thecc1EG046959t1" /codon_start=1 /product="Serine protease inhibitor" /protein_id="EOY18696.1" /translation="MASDECEGKSSWPELVGKKGEDAAATIEKENPRVNAVIVLEGSF VTGDFLCTRVRVWVNTYGIVTRVPIIG" gene complement(4582260..4582744) /locus_tag="TCM_043202" /note="dbxref CacaoGD:Thecc1EG043202" mRNA complement(join(4582260..4582559,4582660..4582744)) /locus_tag="TCM_043202" /product="Serine protease inhibitor" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018139001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046959t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00924t00002" CDS complement(join(4582366..4582559,4582660..4582681)) /locus_tag="TCM_043202" /note="paralog of Thecc1EG046959t1" /codon_start=1 /product="Serine protease inhibitor" /protein_id="EOY18701.1" /translation="MASDECKGKSSWPELVGKKGEDAAARIEKENPHVNAVIVLEGTF VTLEFLCTRVRVWVNTDGIVTRVPIIG" gene complement(4582858..4586941) /locus_tag="TCM_043203" /note="dbxref CacaoGD:Thecc1EG043203" mRNA complement(join(4582858..4583678,4585592..4586339, 4586421..4586941)) /locus_tag="TCM_043203" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043185t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" CDS complement(join(4583543..4583678,4585592..4586339, 4586421..4586820)) /locus_tag="TCM_043203" /note="paralog of Thecc1EG043185t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18702.1" /translation="MMFYPPAPVVVFNPSDREIVSFFLPKLISGEGIGELSYLIEFCD LYCIKPAALFDVNKGFLPFVKPNQRFVFTHRQKISQKNANGKRPRRVLDSRAVGDGGF WRSSTGEKPILDEQGEHVIGYVNTLNFYEYKEWVIGKIKDTACSEEDKCVAFWVKELF GNLLLGNKECPSSALMQEAVFSGNLPLPDYGQCDPLIENYVDGRLQQSENLECQSSIL VERSESLVNGFGEMDSNGLVGEGYSLMDQLLDEDPFNEVDQLLGISNNDQISNLDELV IDKSVDELVREYEALIDGDGLKEVDQLHGISNNNESSKSVEPVIVTGKNVDELSGGYE ELNYDNSFKEVDQLWGISNTDENSKLDELFTDKDVDDIHALLAFDHLPRCAALVCFCY VAPRNFDIKGDQENRRSSGSSNIKKDGVMEDYNGN" gene complement(4587772..4593501) /locus_tag="TCM_043204" /note="dbxref CacaoGD:Thecc1EG043204" mRNA complement(join(4587772..4588169,4588476..4588624, 4588810..4588944,4589110..4589208,4589303..4589377, 4590080..4590145,4590234..4590302,4590384..4590458, 4591040..4591150,4591332..4591394,4591488..4591699, 4592999..4593501)) /locus_tag="TCM_043204" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene23188" /inference="similar to AA sequence:ricco:29595.m000285" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06931t00001" CDS complement(join(4588487..4588624,4588810..4588944, 4589110..4589208,4589303..4589377,4590080..4590145, 4590234..4590302,4590384..4590458,4591040..4591150, 4591332..4591394,4591488..4591699,4592999..4593188)) /locus_tag="TCM_043204" /note="dbxref ricco:29595.m000285" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY18703.1" /db_xref="TAIR:AT3G10350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J3Q8" /translation="MAKAAACHASFTSFSSSFHKFLTPRKPIVAVGFLLSFSPRVHTL SSTFPSLSIKPKRPNNSFQVRSVAAPAEDVAGFEDMVSGTQRKYYMLGGKGGVGKTSC AASLAVKFANNGHHTLVVSTDPAHSLSDSFAQDLTGGTLVPVEGPDFPLFALEINPEK AREEFRDASKNNGGTGVKDFMDGMGLGILAEQLGELKLGELLDTPPPGLDEAIAISKV MQFLESPQYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLRQKIASATSAIKS VFGQEETRQNSADKLERLRERMVKVRDLFRDSDSTEFVIVTIPTVMAVNESSRLRASL EKENVPVRRLIVNQILPPSASDCKFCAVKRKDQMHALDMILNDPELSSLKLIQAPLVD MEIRGVPALKFMGDIVWK" gene complement(4594019..4596064) /locus_tag="TCM_043205" /note="dbxref CacaoGD:Thecc1EG043205" mRNA complement(join(4594019..4594763,4595971..4596064)) /locus_tag="TCM_043205" /product="Zim17-type zinc finger protein" /inference="alignment:exonerate- protein:2:ricco:29595.m000284" /inference="similar to AA sequence:ricco:29595.m000284" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10765t00001" CDS complement(4594218..4594748) /locus_tag="TCM_043205" /note="dbxref ricco:29595.m000284" /codon_start=1 /product="Zim17-type zinc finger protein" /protein_id="EOY18704.1" /db_xref="TAIR:AT3G54826.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLJ0" /translation="MEVNFLPAEPPSQVLPSASAFFSSRHNFYRRWLQIQANPDGQSN EDTENHEADHLKSASDLANVPSEANHSAVKHTAVSNLKTSSRHDLAMIFTCRVCETRS VKTVCRESYEKGVVVARCSGCNNLHLIADRLGWFGEPGSIKDFLAARGEEVKKGSVDT LNLTLEDLAGKGALKG" mobile_element 4596125..4596582 /note="source:scaffold_8_CACTA_0858 14201 14747" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4597160..4597219) /note="source:CACAO_M_E14153_F378_scaffold_3 1734 1805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4598241..4598508 /note="source:CACAO_Again_on_E5_scaffold_1 2937 3205" /mobile_element_type="transposon:TIR/hAT" gene complement(4598450..4600670) /locus_tag="TCM_043206" /note="dbxref CacaoGD:Thecc1EG043206" mRNA complement(4598450..4600670) /locus_tag="TCM_043206" /product="Kinase APK1A, chloroplast, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042102t1" /inference="similar to AA sequence:ricco:29595.m000282" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage" mobile_element 4598665..4598796 /note="source:scaffold_6_CACTA_0713 1009 1140" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4598925..4599082 /note="source:scaffold_8_CACTA_0851 2383 2541" /mobile_element_type="transposon:TIR/CACTA" CDS complement(4599310..4600569) /locus_tag="TCM_043206" /note="dbxref ricco:29595.m000282; paralog of Thecc1EG042102t1" /codon_start=1 /product="Kinase APK1A, chloroplast, putative" /protein_id="EOY18705.1" /db_xref="TAIR:AT3G57120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SY61" /translation="MCGSKKSIEVIQPRSSKRPSFSSSSQTPKTSKSVSSLSDPSSST SAANNLVLSSSYFLDNSSSYSTSSQISRTLSTFKASLPENPHIYNFSDICSATDNFLA KRFSSSSSSSSWLCNLQGKRVVIFQRKLRRAIELDDLVHKLSLICRSHHSSLIKLLGV SLSGNYIYLVYEYVQGANLRDCLRNPKNPSFTILSTWISRMQIADGIAHGLDYIHHCS GLETSFTHNHIKISSILVAEDSLRAKICHFGTAELCGEVAKEEGSKSLKRSNSKVMKI EGTRGYMAPELQFSGLVTQKCDVYAFGVVVLELLSGQEALKYSVDEENGGYKRVSVID TAREAAAGGSAGVRRWVDRRFKDSFPVDVAEKMVLVALECVEEDPGKRPDMNKVAGQV SKSYLESKNWADKIVLPTDISVSMAPR" gene complement(4601886..4613260) /locus_tag="TCM_043207" /note="dbxref CacaoGD:Thecc1EG043207" mRNA complement(join(4601886..4602905,4604875..4605008, 4605113..4605402,4605695..4605843,4606364..4606858, 4607052..4607348,4608799..4609727,4609888..4609961, 4610131..4610165,4610355..4610501,4610598..4610661, 4610978..4611247,4611584..4611660,4612181..4612882, 4613045..4613260)) /locus_tag="TCM_043207" /product="White, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022192t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8426t3" mRNA complement(join(4601985..4602905,4604875..4604989, 4605113..4605402,4605695..4605843,4606364..4606858, 4607052..4607348,4608799..4609727,4609888..4609961, 4610131..4610165,4610355..4610501,4610598..4610661, 4610978..4611247,4611584..4611660,4612181..4612714)) /locus_tag="TCM_043207" /product="White, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022192t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23210.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc675t4; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8426t3" mRNA complement(join(4601985..4602905,4604875..4605008, 4605113..4605402,4605695..4605843,4606364..4606858, 4607052..4607348,4608799..4609727,4609888..4609961, 4610131..4610165,4610359..4610501,4610598..4610661, 4610978..4611247,4611584..4611660,4612181..4612476)) /locus_tag="TCM_043207" /product="White, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022192t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc685t1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8426t3" CDS complement(join(4602749..4602905,4604875..4605008, 4605113..4605402,4605695..4605843,4606364..4606858, 4607052..4607348,4608799..4609727,4609888..4609961, 4610131..4610165,4610355..4610501,4610598..4610661, 4610978..4611247,4611584..4611660,4612181..4612425)) /locus_tag="TCM_043207" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022192t1" /codon_start=1 /product="White, putative isoform 1" /protein_id="EOY18706.1" /db_xref="Phytozome:POPTR_0010s23210.1" /db_xref="TAIR:AT1G53390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SY65" /translation="MLKMGLKKLKVCSFWSASFWVFVVLSFLVNMVQCQDLNDYDQVD DPTALRFTTALVNSRLSNLTAVFSKDIGDQARFCIKNQEADWNKAFNFSSNLDFLASC IQKTKGDIMRRLCTAAEAKFYFDTFFRSSSATNLRPNENCNVTSWVSGCEPGWACSIG PNQQVDLENSRVIPPRTHDCQACCEGFFCPRGLTCMIPCPLGSHCPVATLNNATGICE PYLYQLPPGKPNHTCGGANIWADVRSSGEVFCSAGSYCPTTTQEKPCSSGHYCRMGST SEKRCFKLTSCNSNASNQDLHAYGIMLIAATTTLLLIIYNCSDQVLNTRERRLAKTRE AAARSARDTAKARQRWKTAKDAAKKHASGLQTHFSQTFSFKKSAKHPEELKILDQTSC ETDEDLYAPTHISSSSESLSSSAPSRGKPMEPGNLMRMMHEIEDDPGNYEGFDVNTHD RKSKGHKPKGKQPNTHSQIFKYAYAQLEKEKALQEENKNLTFSGVISMATNPEIRKRP LIEVSFKDLTLTLKGKGKHLLRCVTGKIKPGRITAVMGPSGAGKTTFISALAGKAIGC KMTGLILINGKNESIRSYRKIIGYVPQDDIVHGNLTVEENLRFNAKCRLPAHLSKPDT VLVVERVIESLGLQMVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSG LDSASSQLLLRALRHEALEGVNICMVLHQPSYALFQMFDDLVLLAKGGLTVYHGSAKK AEEYFAGLGIHVPERVNPPDHFIDILEGIVTPSATSGVNHKELPVRWMLHNGYPVPPD LQQSFAQLAMPSAGAGPANGTNPVHAGMEEKSFAGELWQDVRSNVELQRDSIHHNFLK FKDLSCRRTPGVLWQYRYFLGRVGKQRMREAKIQATDYLILLLAGACLGTLAKTSDEN FGAVGYTYTIIAVSLLCKIAALRSFSLDKLQYWRESASGMSSLAYFLAKDTIDHFNTV IKPVVYLSMFFFFTNPRSSFAENYIVLLCLVYCVTGIAYALAIFFQPGPAQLWSVLLP VVLTLVATQKQDGEVLKKISNLCYPKWALEAFVIANAERYYGVWLITRCGALLKSGYS LHEWTLCIFILILTGVVSRLFAFVGMITFQKK" CDS complement(join(4602749..4602905,4604875..4605008, 4605113..4605402,4605695..4605843,4606364..4606858, 4607052..4607348,4608799..4609727,4609888..4609961, 4610131..4610152)) /locus_tag="TCM_043207" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022192t1" /codon_start=1 /product="White, putative isoform 2" /protein_id="EOY18707.1" /db_xref="Phytozome:POPTR_0010s23210.1" /db_xref="TAIR:AT5G60740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SY65" /translation="MGSTSEKRCFKLTSCNSNASNQDLHAYGIMLIAATTTLLLIIYN CSDQVLNTRERRLAKTREAAARSARDTAKARQRWKTAKDAAKKHASGLQTHFSQTFSF KKSAKHPEELKILDQTSCETDEDLYAPTHISSSSESLSSSAPSRGKPMEPGNLMRMMH EIEDDPGNYEGFDVNTHDRKSKGHKPKGKQPNTHSQIFKYAYAQLEKEKALQEENKNL TFSGVISMATNPEIRKRPLIEVSFKDLTLTLKGKGKHLLRCVTGKIKPGRITAVMGPS GAGKTTFISALAGKAIGCKMTGLILINGKNESIRSYRKIIGYVPQDDIVHGNLTVEEN LRFNAKCRLPAHLSKPDTVLVVERVIESLGLQMVRNSLVGTVEKRGISGGQRKRVNVG LEMVMEPSLLILDEPTSGLDSASSQLLLRALRHEALEGVNICMVLHQPSYALFQMFDD LVLLAKGGLTVYHGSAKKAEEYFAGLGIHVPERVNPPDHFIDILEGIVTPSATSGVNH KELPVRWMLHNGYPVPPDLQQSFAQLAMPSAGAGPANGTNPVHAGMEEKSFAGELWQD VRSNVELQRDSIHHNFLKFKDLSCRRTPGVLWQYRYFLGRVGKQRMREAKIQATDYLI LLLAGACLGTLAKTSDENFGAVGYTYTIIAVSLLCKIAALRSFSLDKLQYWRESASGM SSLAYFLAKDTIDHFNTVIKPVVYLSMFFFFTNPRSSFAENYIVLLCLVYCVTGIAYA LAIFFQPGPAQLWSVLLPVVLTLVATQKQDGEVLKKISNLCYPKWALEAFVIANAERY YGVWLITRCGALLKSGYSLHEWTLCIFILILTGVVSRLFAFVGMITFQKK" mobile_element complement(4604325..4604734) /note="source:CACAO_M_E85221_F123_scaffold_10 1 410" /mobile_element_type="retrotransposon:LTR/Copia" mRNA complement(join(<4604688..4604754,4604875..4605008, 4605113..4605402,4605695..4605843,4606364..4606858, 4607052..4607348,4608799..4609727,4609888..4609961, 4610131..4610501,4610598..4610661,4610978..4611247, 4611584..4611660,4612181..4612714)) /locus_tag="TCM_043207" /product="White, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022192t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23210.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9766t3; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8426t3" CDS complement(join(<4604688..4604754,4604875..4605008, 4605113..4605402,4605695..4605843,4606364..4606858, 4607052..4607348,4608799..4609727,4609888..4609961, 4610131..4610152)) /locus_tag="TCM_043207" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG022192t1" /codon_start=1 /product="White, putative isoform 4" /protein_id="EOY18709.1" /db_xref="Phytozome:POPTR_0010s23210.1" /db_xref="TAIR:AT5G60740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SY65" /translation="MGSTSEKRCFKLTSCNSNASNQDLHAYGIMLIAATTTLLLIIYN CSDQVLNTRERRLAKTREAAARSARDTAKARQRWKTAKDAAKKHASGLQTHFSQTFSF KKSAKHPEELKILDQTSCETDEDLYAPTHISSSSESLSSSAPSRGKPMEPGNLMRMMH EIEDDPGNYEGFDVNTHDRKSKGHKPKGKQPNTHSQIFKYAYAQLEKEKALQEENKNL TFSGVISMATNPEIRKRPLIEVSFKDLTLTLKGKGKHLLRCVTGKIKPGRITAVMGPS GAGKTTFISALAGKAIGCKMTGLILINGKNESIRSYRKIIGYVPQDDIVHGNLTVEEN LRFNAKCRLPAHLSKPDTVLVVERVIESLGLQMVRNSLVGTVEKRGISGGQRKRVNVG LEMVMEPSLLILDEPTSGLDSASSQLLLRALRHEALEGVNICMVLHQPSYALFQMFDD LVLLAKGGLTVYHGSAKKAEEYFAGLGIHVPERVNPPDHFIDILEGIVTPSATSGVNH KELPVRWMLHNGYPVPPDLQQSFAQLAMPSAGAGPANGTNPVHAGMEEKSFAGELWQD VRSNVELQRDSIHHNFLKFKDLSCRRTPGVLWQYRYFLGRVGKQRMREAKIQATDYLI LLLAGACLGTLAKTSDENFGAVGYTYTIIAVSLLCKIAALRSFSLDKLQYWRESASGM SSLAYFLAKDTIDHFNTVIKPVVYLSMFFFFTNPRSSFAENYIVLLCLVYCVTGIAYA LAIFFQPGPAQLWSVLLPVVLTLVATQKQDGEVLKKISNLCYPKWALEAFVIANAERQ REASRLKNFIKKISHRVDIKT" CDS complement(join(4604981..4604989,4605113..4605402, 4605695..4605843,4606364..4606858,4607052..4607348, 4608799..4609727,4609888..4609961,4610131..4610165, 4610355..4610501,4610598..4610661,4610978..4611247, 4611584..4611660,4612181..4612425)) /locus_tag="TCM_043207" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022192t1" /codon_start=1 /product="White, putative isoform 3" /protein_id="EOY18708.1" /db_xref="Phytozome:POPTR_0010s23210.1" /db_xref="TAIR:AT1G53390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SY65" /translation="MLKMGLKKLKVCSFWSASFWVFVVLSFLVNMVQCQDLNDYDQVD DPTALRFTTALVNSRLSNLTAVFSKDIGDQARFCIKNQEADWNKAFNFSSNLDFLASC IQKTKGDIMRRLCTAAEAKFYFDTFFRSSSATNLRPNENCNVTSWVSGCEPGWACSIG PNQQVDLENSRVIPPRTHDCQACCEGFFCPRGLTCMIPCPLGSHCPVATLNNATGICE PYLYQLPPGKPNHTCGGANIWADVRSSGEVFCSAGSYCPTTTQEKPCSSGHYCRMGST SEKRCFKLTSCNSNASNQDLHAYGIMLIAATTTLLLIIYNCSDQVLNTRERRLAKTRE AAARSARDTAKARQRWKTAKDAAKKHASGLQTHFSQTFSFKKSAKHPEELKILDQTSC ETDEDLYAPTHISSSSESLSSSAPSRGKPMEPGNLMRMMHEIEDDPGNYEGFDVNTHD RKSKGHKPKGKQPNTHSQIFKYAYAQLEKEKALQEENKNLTFSGVISMATNPEIRKRP LIEVSFKDLTLTLKGKGKHLLRCVTGKIKPGRITAVMGPSGAGKTTFISALAGKAIGC KMTGLILINGKNESIRSYRKIIGYVPQDDIVHGNLTVEENLRFNAKCRLPAHLSKPDT VLVVERVIESLGLQMVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSG LDSASSQLLLRALRHEALEGVNICMVLHQPSYALFQMFDDLVLLAKGGLTVYHGSAKK AEEYFAGLGIHVPERVNPPDHFIDILEGIVTPSATSGVNHKELPVRWMLHNGYPVPPD LQQSFAQLAMPSAGAGPANGTNPVHAGMEEKSFAGELWQDVRSNVELQRDSIHHNFLK FKDLSCRRTPGVLWQYRYFLGRVGKQRMREAKIQATDYLILLLAGACLGTLAKTSDEN FGAVGYTYTIIAVSLLCKIAALRSFSLDKLQYWRESASGMSSLAYFLAKDTIDHFNTV IKPVVYLSMFFFFTNPRSSFAENYIVLLCLVYCVTGIAYALAIFFQPGPAQLLF" mobile_element complement(4613755..4613798) /note="source:CACAO_Mariner_E6_scaffold_1 4882 4925" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(4613925..4614117) /note="source:scaffold_2_CACTA_0245 1474 1638" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4614260..4614480 /note="source:CACAO_PIF_E144_scaffold_10 2173 2387" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4615065..4615293) /note="source:CACAO_on_SSS_E94_scaffold_6 82 306" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4615292..4616237 /note="source:CACAO_M_E49279_F74_scaffold_6 1002 1937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4616231..4616312 /note="source:scaffold_8_CACTA_0858 14642 14724" /mobile_element_type="transposon:TIR/CACTA" gene 4618346..4622799 /locus_tag="TCM_043208" /note="dbxref CacaoGD:Thecc1EG043208" mRNA join(4618346..4618358,4619127..4619538,4620613..4620873, 4621230..4621352,4621706..4622799) /locus_tag="TCM_043208" /product="Receptor-like protein kinase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022193t1" /inference="similar to AA sequence:ricco:29595.m000287" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07219t00001" CDS join(4619152..4619538,4620613..4620873,4621230..4621352, 4621706..4622227) /locus_tag="TCM_043208" /note="dbxref ricco:29595.m000287; paralog of Thecc1EG022193t1" /codon_start=1 /product="Receptor-like protein kinase" /protein_id="EOY18710.1" /db_xref="TAIR:AT3G09830.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DGR0" /translation="MKCFCFSGKEKNAEPKATKSISVRSSTSISMSADHDMRRSGSEF NSQNVSDFSTESSTKNSFAALSQRQSNLREFTFSELKTATKNFSRSLMIGEGGFGGVY RGVIRSTDDPHKKIDIAVKQLSRRGLQGHKEWVTEVNVLGVVEHQNLVKLVGYCAEDD ERGIQRLLIYEYMPNRSVQDHLSSQFQTTLPWATRIKIAQDAARGLAYLHEGMDFQII FRDFKSSNILLDEHWNAKLSDFGLARLGPSDGLSHVSTAVVGTIGYAAPEYIQTGRLT AKSDVWSYGVFLYELITGRRPLDRSRPKREQKLLEWVRPHISDIKKFKLILDPRLEGK YSLKSAHKLAAVANKCLARQAKLRPKMSEVLEMVNRIVEAADMVSPQLPMKSSTPKNV SEVLSSRKHLKRRFVDLITGDKGCLIWRTWRPKIVRTC" gene 4622910..4628020 /locus_tag="TCM_043209" /note="dbxref CacaoGD:Thecc1EG043209" mRNA join(4622910..4623239,4626352..4626490,4626568..4626682, 4627893..>4627921) /locus_tag="TCM_043209" /product="Cwf18 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30009.m000827" /inference="similar to AA sequence:Phytozome:GSVIVT01024249001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc50t1_C1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc35t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc50t2" mRNA join(4623055..4623239,4626352..4626484,4626568..4626682, 4627893..4628020) /locus_tag="TCM_043209" /product="Cwf18 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30009.m000827" /inference="similar to AA sequence:Phytozome:GSVIVT01024249001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc35t2; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc35t2" CDS join(4623088..4623239,4626352..4626484,4626568..4626682, 4627893..4627948) /locus_tag="TCM_043209" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cwf18 isoform 1" /protein_id="EOY18711.1" /db_xref="Phytozome:GSVIVT01024249001" /db_xref="TAIR:AT3G05070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H295" /translation="MATEEESIEQAAASRRERLRALKAAQELLSTPDEDSAQAAEDKT NETDEENNRSMKFRNYVPHDIQLQEGKVAPPVLPKFEDPVEVAPPPSEDQEDPFVNIA PKKPNWDLRRDVQKKLDKLERRTQKAIYILMEQQEQEKQLAEGGNNIED" CDS join(4623088..4623239,4626352..4626490,4626568..4626682, 4627893..>4627921) /locus_tag="TCM_043209" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cwf18 isoform 2" /protein_id="EOY18712.1" /db_xref="Phytozome:GSVIVT01024249001" /db_xref="TAIR:AT3G05070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H295" /translation="MATEEESIEQAAASRRERLRALKAAQELLSTPDEDSAQAAEDKT NETDEENNRSMKFRNYVPHDIQLQEGKVAPPVLPKFEDPVEVAPPPSEDQEVLDPFVN IAPKKPNWDLRRDVQKKLDKLERRTQKAIYILMEQQEQEKQLA" gene 4628764..4630117 /locus_tag="TCM_043210" /note="dbxref CacaoGD:Thecc1EG043210" mRNA 4628764..4630117 /locus_tag="TCM_043210" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s23560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043211t1" /inference="similar to AA sequence:frave:gene32320" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1126t1_C1" CDS 4628815..4629699 /locus_tag="TCM_043210" /note="dbxref frave:gene32320; paralog of Thecc1EG043211t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18713.1" /translation="MALCNSSHHYRIYVSAQPNNVYKDDQSLESPLITFKCNIKMSYI SDQPDKYIQIHIQGHDSWHEFEHNPANELTRDFISNMLANTRIIPFSLRNLHWKKRVY DKESVPLMSTDGVINSMLDVCHNMVRESRRQKMFLLVFIKKEVIVPHAEYLAMLKAKQ AEEILHQVEDMVRLQAQGWSFQQADWENMGNVIRQAGLGNSIRNALDLARERAIRESS EQQVVRLVPAAATSVQVLKKVTCGSEEKCSVCLEEMLTGSQVTQMPCSHVFHGDCIVQ WLKTSHMCPVCRFKLPTT" gene 4629956..4638790 /locus_tag="TCM_043211" /note="dbxref CacaoGD:Thecc1EG043211" mRNA join(4629956..4630003,4634095..4634696,4637088..4638790) /locus_tag="TCM_043211" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000641001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043210t1" /inference="similar to AA sequence:frave:gene32320" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc2115t1" gene 4630783..4633989 /locus_tag="TCM_043212" /note="dbxref CacaoGD:Thecc1EG043212" mRNA join(4630783..4631745,4633958..4633989) /locus_tag="TCM_043212" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene14699" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011225t1" /inference="similar to AA sequence:frave:gene24361" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc12332t1" CDS 4631312..4631680 /locus_tag="TCM_043212" /note="dbxref frave:gene24361; paralog of Thecc1EG011225t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18715.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B902" /translation="MKPGETITQYFSRVMAIVNKMRVHGDASKDVVIVEKILRSLTPK YNFIVCFIEESHGIDELSLDELQCSLLVHEQKLIQPNQVEQAFQVSTQASRHDKSKKK KRKGYRSVQIDNNAQRKERG" mobile_element 4633961..4634354 /note="source:CACAO_LINE_E_66_scaffold_2 1 416" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 4634344..4634716 /note="source:CACAO_LINE_E_115_scaffold_4 198 572" /mobile_element_type="retrotransposon:LINE/L1" CDS join(4634592..4634696,4637088..4637978) /locus_tag="TCM_043211" /note="dbxref frave:gene32320; paralog of Thecc1EG043210t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18714.1" /translation="MHLPGRDSKFGGFSAYASILSLGRATVETDLLLLVVPMAHCNSS HRYRIYVSAQPNNVYQDDQSLESPLITFKCNIKMSYISDKPDKSIQSYIQGHDSWHDF EHHPANELTRDFISNMLANTRIIPFSLRNLYWKNQVYDQESVPLMSTDGVITSMLDVC DSMVSESRRKKFFLLVFIKKEVIMPHDEYLAMLKAKQAEEILHQLEDMVRLQAQGWRF RQADWENMANVIRQAGLGNSIRIALDLVRERATRESSEQQVVRLVPAAATSVQALEKV TCHSEEKCSVCLEEMLTGSQVTKMPCSHLFHGDCIIQWLKTSHICPVCRFKLPTT" gene 4635053..4636245 /locus_tag="TCM_043213" /note="dbxref CacaoGD:Thecc1EG043213" mRNA join(4635053..4635187,4635260..4636245) /locus_tag="TCM_043213" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000641001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021871t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000641001" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS join(4635104..4635187,4635260..4635955) /locus_tag="TCM_043213" /note="paralog of Thecc1EG021871t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY18716.1" /db_xref="Phytozome:GSVIVT01000641001" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B557" /translation="MFDKFKESMMKEFDMTDLGRLHYFLGLEMEKCIPVLTLADPSIK LDKDLKGKDVDGTYYKHIVRSLMYLTTTRLDIMYAVSLIIRYMDKPKQSYLLVAKRIL RYLQGTTSHGLLYKKGENSMLIGFTDRDYAGDRDDRKSTTGFVFKLESNAISWSSKKQ PIITLSTTEAKFVAATACACQSIWLKKLLKEIYCKQTEATPIYCDNSSAIKLSKNPVF LRRSKHIDVRYHFLRDLTRDGIIAVVYCKSEDQAADIFTKP" mobile_element 4636770..4636820 /note="source:scaffold_2_CACTA_0245 2350 2400" /mobile_element_type="transposon:TIR/CACTA" gene 4638853..4640139 /locus_tag="TCM_043214" /note="dbxref CacaoGD:Thecc1EG043214" mRNA 4638853..4640139 /locus_tag="TCM_043214" /product="Ubiquitin carboxyl-terminal hydrolase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025678t1" /inference="similar to AA sequence:Phytozome:Glyma09g03580.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2601t1" CDS 4638971..4640074 /locus_tag="TCM_043214" /note="paralog of Thecc1EG025678t1" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase family protein" /protein_id="EOY18717.1" /db_xref="Phytozome:Glyma09g03580.1" /db_xref="TAIR:AT2G39120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLI2" /translation="MKWKKDPFFDSIMHIHKSIELKPIIQLKNFIAKDPSGCIPISAV SKRGLEFDISIKVARFLRQYPSVFEEFRGPEYNLPWFRLTPEAAEIDREEKRVFDECK EDLKDRLKRFILMSKDKVLPLKIIKGMEWYLGLPEGFLEDSKGNLDESFRFMDMEDGL KGLAVESELEKVLSTMQRNAMKNGVYFGGTMEGIEFPIFPSKGLRLRRKIEGWLNEFQ KLPYVSPYEDFSHLDPNSDVAEKRVVGILHELLSLFVEHSAQRKKLLCLKKYFGLPQK VHKAFERHPHMFYLSFKNKTCTAILKEAYCGKSSIERHPLLGVRKKYIRLVKESGRIL KNRKTNNQFIKQEKLEKDSDSDSESDDRTELPL" mobile_element 4641821..4641912 /note="source:scaffold_8_CACTA_0850 11626 11716" /mobile_element_type="transposon:TIR/CACTA" gene 4642216..4651736 /locus_tag="TCM_043216" /note="dbxref CacaoGD:Thecc1EG043216" mRNA join(4642216..4642292,4643896..4644278,4644365..4644609, 4645422..4645495,4646824..4646878,4648807..4648881, 4648987..4649060,4649148..4649196,4649962..4650046, 4650763..4650819,4650932..4651736) /locus_tag="TCM_043216" /product="Cysteine proteinases superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042115t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23230.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2611t4" mRNA join(4642227..4642292,4643896..4644278,4644365..4644609, 4645422..4645495,4646824..4646878,4648804..4648881, 4648987..4649060,4649148..4649196,4649962..4650046, 4650763..4650819,4650932..4651223) /locus_tag="TCM_043216" /product="Cysteine proteinases superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042115t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23230.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2611t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2611t4" mRNA join(4642227..4642292,4643896..4644278,4644365..4644609, 4645422..4645495,4646824..4646878,4648807..4648881, 4648985..4649060,4649148..4649201,4649962..4650046, 4650763..4650819,4650932..4651223) /locus_tag="TCM_043216" /product="Cysteine proteinases superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03650.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03650.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2611t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2611t4" CDS join(4643963..4644278,4644365..4644609,4645422..4645495, 4646824..4646878,4648804..4648881,4648987..4649060, 4649148..4649196,4649962..4650046,4650763..4650819, 4650932..4650987) /locus_tag="TCM_043216" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042115t1" /codon_start=1 /product="Cysteine proteinases superfamily protein, putative isoform 2" /protein_id="EOY18719.1" /db_xref="Phytozome:POPTR_0010s23230.1" /db_xref="TAIR:AT5G04250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LBW2" /translation="MITYDIDPDVLRWGLEDLQVCVFSHSGASGSVTQYERDNSQTGY IGEGYYEPEHVNVENDAVIAHAFQEELSRVAAAEASGSTNPGQDSILAQDCFGFPGRQ HSSDHEDVRKIVEDPNQTERCTNEVNHVKRDLSDQNISRSEQGGDSGMGDKVFLGEDM LRIDKIDESSALDGEVEKRLNDMVAIPHVPKINSEIPSADEEISDHQRLLDRLQLYGL VENKVQGDGNCQQFRSLSDQLYRSQDHHRFVRQQVVSQLKLNPEIYKGYVPMAYGDYL KKMNKNGEWGDHVTLQAAADTYGVKIFVLTSFKDTCYIEILPHRQKSQRIIFLSFWAE VHYNSIYPEEELPMLESQKKKKWWMILS" CDS join(4643963..4644278,4644365..4644609,4645422..4645495, 4646824..4646878,4648807..4648881,4648987..4649060, 4649148..4649196,4649962..4650046,4650763..4650819, 4650932..4650987) /locus_tag="TCM_043216" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042115t1" /codon_start=1 /product="Cysteine proteinases superfamily protein, putative isoform 1" /protein_id="EOY18718.1" /db_xref="Phytozome:POPTR_0010s23230.1" /db_xref="TAIR:AT5G04250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LBW2" /translation="MITYDIDPDVLRWGLEDLQVCVFSHSGASGSVTQYERDNSQTGY IGEGYYEPEHVNVENDAVIAHAFQEELSRVAAAEASGSTNPGQDSILAQDCFGFPGRQ HSSDHEDVRKIVEDPNQTERCTNEVNHVKRDLSDQNISRSEQGGDSGMGDKVFLGEDM LRIDKIDESSALDGEVEKRLNDMVAIPHVPKINSEIPSADEEISDHQRLLDRLQLYGL VENKVQGDGNCQFRSLSDQLYRSQDHHRFVRQQVVSQLKLNPEIYKGYVPMAYGDYLK KMNKNGEWGDHVTLQAAADTYGVKIFVLTSFKDTCYIEILPHRQKSQRIIFLSFWAEV HYNSIYPEEELPMLESQKKKKWWMILS" CDS join(4643963..4644278,4644365..4644609,4645422..4645495, 4646824..4646878,4648807..4648881,4648985..4648996) /locus_tag="TCM_043216" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein, putative isoform 3" /protein_id="EOY18720.1" /db_xref="Phytozome:POPTR_0008s03650.1" /db_xref="TAIR:AT5G04250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUI1" /translation="MITYDIDPDVLRWGLEDLQVCVFSHSGASGSVTQYERDNSQTGY IGEGYYEPEHVNVENDAVIAHAFQEELSRVAAAEASGSTNPGQDSILAQDCFGFPGRQ HSSDHEDVRKIVEDPNQTERCTNEVNHVKRDLSDQNISRSEQGGDSGMGDKVFLGEDM LRIDKIDESSALDGEVEKRLNDMVAIPHVPKINSEIPSADEEISDHQRLLDRLQLYGL VENKVQGDGNCQFRSLSDQLYRSQDHHRFVRQQVVSQSLN" mRNA join(<4644029..4644278,4644365..4644609,4645422..4645495, 4646824..4646878,4648807..4648881,4648987..4649060, 4649148..4649196,4649962..4650046,4650763..>4650957) /locus_tag="TCM_043216" /product="Cysteine proteinases superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042115t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016238001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9355t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2611t4" CDS join(<4644029..4644278,4644365..4644609,4645422..4645495, 4646824..4646878,4648807..4648881,4648987..4649060, 4649148..4649196,4649962..4650046,4650763..>4650956) /locus_tag="TCM_043216" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042115t1" /codon_start=1 /product="Cysteine proteinases superfamily protein, putative isoform 4" /protein_id="EOY18721.1" /db_xref="Phytozome:GSVIVT01016238001" /db_xref="TAIR:AT5G04250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUI1" /translation="FSHSGASGSVTQYERDNSQTGYIGEGYYEPEHVNVENDAVIAHA FQEELSRVAAAEASGSTNPGQDSILAQDCFGFPGRQHSSDHEDVRKIVEDPNQTERCT NEVNHVKRDLSDQNISRSEQGGDSGMGDKVFLGEDMLRIDKIDESSALDGEVEKRLND MVAIPHVPKINSEIPSADEEISDHQRLLDRLQLYGLVENKVQGDGNCQFRSLSDQLYR SQDHHRFVRQQVVSQLKLNPEIYKGYVPMAYGDYLKKMNKNGEWGDHVTLQAAADTYG VKIFVLTSFKDTCYIEILPHRQKSQRIIFLSFWAEVHYNSIYPEEGKLTQQNAFNKTR VAIPNVEETVLSYCIIMFMLFFISRTAYVRESE" mobile_element complement(4650024..4650110) /note="source:scaffold_5_CACTA_0584 14343 14426" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4650109..4650285) /note="source:scaffold_5_CACTA_0584 14210 14382" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4650870..4651002) /note="source:scaffold_5_CACTA_0584 14055 14202" /mobile_element_type="transposon:TIR/CACTA" gene complement(4651386..4659580) /locus_tag="TCM_043217" /note="dbxref CacaoGD:Thecc1EG043217" mRNA complement(join(4651386..4651943,4652037..4652211, 4652714..4652908,4653814..4653924,4654011..4654223, 4654809..4654916,4655005..4655146,4655233..4655800, 4655909..4656773,4657844..4658543,4659165..4659224, 4659314..4659580)) /locus_tag="TCM_043217" /product="Pumilio 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016236001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041794t1" /inference="similar to AA sequence:ricco:29595.m000292" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc18272t1" mRNA complement(join(4651433..4651943,4652037..4652211, 4652714..4652861,4653814..4653924,4654011..4654223, 4654809..4654916,4655005..4655146,4655233..4655800, 4655909..4656773,4657844..4658543,4659165..4659239)) /locus_tag="TCM_043217" /product="Pumilio 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016236001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041794t1" /inference="similar to AA sequence:ricco:29595.m000292" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc292t3; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7730t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc18272t1" CDS complement(join(4651906..4651943,4652037..4652211, 4652714..4652908,4653814..4653924,4654011..4654223, 4654809..4654916,4655005..4655146,4655233..4655800, 4655909..4656773,4657844..4658509)) /locus_tag="TCM_043217" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29595.m000292; paralog of Thecc1EG041794t1" /codon_start=1 /product="Pumilio 4 isoform 1" /protein_id="EOY18722.1" /db_xref="TAIR:AT3G10360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TM64" /translation="MLPTIDNGLERHGGNLEDSFTELELILQAHRNQQFVGRERDLNI YRSGSAPPTVEGSLSAVGSLFANPDFGDINGITAVAGSSSSSNNGMLSEDEIRSHPAY LSYYYSHENINPRLPPPLLSKEDWRVAQRFQASGSSLGNIGDWRKKKLVDGGDSSSLF SMQPGLSVQQEQNDLMELRNTNARNTSRKMSAEWLDRGSDGLVGLSGTGLGARRKSFA DILQDGLDRPATLSGHLSQPSSRNAFSDMLDAASIADPSPPGFHNAAESIESLPAGVA RPGVVGVQSHGKTTSHSFASAVGSSLSRSTTPEPYLVGRSSGSGLPPVGSKVGHAEKK NIIGSNVQNGHSSAVTELSEIGATLSGLTLSKTRHADENSHMRSQLQVDLDNQLDFSF NMPNGHNQSLQQQFIDKSSAEKLAFPTNHIDLARKKGIAPNINAYNISSNGQVSIPKR TSSSADLYAKVHPSGLGSLEVCDVGHPNVNLANTDFIGQLPSAYSVNQKLNSAIKNHL NAGSPLTGTGDRQSLNRAGNQGADLLSPLMDPRYIQYLQRTSQYGARAAASPDSLLSG NYVGTLHGDLDGLQKAYLEAILAQQKQQYELPLLGKAAALNHGYYGNPSYGLGMPFAG NSMANSVLPSIGSGSIQNDRTARFNSMMRTSTGAWPSDIGNNVDGRFISSLLDEFKNN KTRCFELLDIIDHVVEFSTDQYGSRFIQQKLETATEEEKTKIFPEIIPHARALMTDVF GNYVIQKFFEHGTESQRAELASQLTGHVLPLSLQMYGCRVIQKALEVVGVDQQTGMVA ELDGSIMKCVRDQNGNHVIQKCIECVPQDRIQFIISAFHGQVVALSTHPYGCRVIQRV LEHCDDVKTQQIIMDEIMLSVCTLAQDQYGNYVIQHVLEHGKPHERSAIISKLAGQIV KMSQQKFASNVVEKCLTFGGPEERQILVNEMLGSTDENEPLQAMMKDQFGNYVVQKVL ETCDDRSLELILSRIKVHLNALKRYTYGKHIVSRVEKLIATGERRIGLLSSLAA" CDS complement(join(4652811..4652861,4653814..4653924, 4654011..4654223,4654809..4654916,4655005..4655146, 4655233..4655800,4655909..4656773,4657844..4658509)) /locus_tag="TCM_043217" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29595.m000292; paralog of Thecc1EG041794t1" /codon_start=1 /product="Pumilio 4 isoform 2" /protein_id="EOY18723.1" /db_xref="TAIR:AT3G10360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TM64" /translation="MLPTIDNGLERHGGNLEDSFTELELILQAHRNQQFVGRERDLNI YRSGSAPPTVEGSLSAVGSLFANPDFGDINGITAVAGSSSSSNNGMLSEDEIRSHPAY LSYYYSHENINPRLPPPLLSKEDWRVAQRFQASGSSLGNIGDWRKKKLVDGGDSSSLF SMQPGLSVQQEQNDLMELRNTNARNTSRKMSAEWLDRGSDGLVGLSGTGLGARRKSFA DILQDGLDRPATLSGHLSQPSSRNAFSDMLDAASIADPSPPGFHNAAESIESLPAGVA RPGVVGVQSHGKTTSHSFASAVGSSLSRSTTPEPYLVGRSSGSGLPPVGSKVGHAEKK NIIGSNVQNGHSSAVTELSEIGATLSGLTLSKTRHADENSHMRSQLQVDLDNQLDFSF NMPNGHNQSLQQQFIDKSSAEKLAFPTNHIDLARKKGIAPNINAYNISSNGQVSIPKR TSSSADLYAKVHPSGLGSLEVCDVGHPNVNLANTDFIGQLPSAYSVNQKLNSAIKNHL NAGSPLTGTGDRQSLNRAGNQGADLLSPLMDPRYIQYLQRTSQYGARAAASPDSLLSG NYVGTLHGDLDGLQKAYLEAILAQQKQQYELPLLGKAAALNHGYYGNPSYGLGMPFAG NSMANSVLPSIGSGSIQNDRTARFNSMMRTSTGAWPSDIGNNVDGRFISSLLDEFKNN KTRCFELLDIIDHVVEFSTDQYGSRFIQQKLETATEEEKTKIFPEIIPHARALMTDVF GNYVIQKFFEHGTESQRAELASQLTGHVLPLSLQMYGCRVIQKALEVVGVDQQTGMVA ELDGSIMKCVRDQNGNHVIQKCIECVPQDRIQFIISAFHGQVVALSTHPYGCRVIQRV LEHCDDVKTQQIIMDEIMLSVCTLAQDQYGNYVIQQACRTNREDESAEIRF" mRNA complement(join(4652840..4652908,4653814..4653924, 4654011..4654223,4654809..4655146,4655233..4655800, 4655909..4656773,4657844..4658543,4659165..4659224, 4659314..4659336)) /locus_tag="TCM_043217" /product="Pumilio 4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016236001" /inference="similar to AA sequence:ricco:29595.m000292" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc295t6; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7730t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc18272t1" CDS complement(join(4654942..4655146,4655233..4655800, 4655909..4656773,4657844..4658509)) /locus_tag="TCM_043217" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29595.m000292" /codon_start=1 /product="Pumilio 4 isoform 3" /protein_id="EOY18724.1" /db_xref="TAIR:AT3G10360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TM64" /translation="MLPTIDNGLERHGGNLEDSFTELELILQAHRNQQFVGRERDLNI YRSGSAPPTVEGSLSAVGSLFANPDFGDINGITAVAGSSSSSNNGMLSEDEIRSHPAY LSYYYSHENINPRLPPPLLSKEDWRVAQRFQASGSSLGNIGDWRKKKLVDGGDSSSLF SMQPGLSVQQEQNDLMELRNTNARNTSRKMSAEWLDRGSDGLVGLSGTGLGARRKSFA DILQDGLDRPATLSGHLSQPSSRNAFSDMLDAASIADPSPPGFHNAAESIESLPAGVA RPGVVGVQSHGKTTSHSFASAVGSSLSRSTTPEPYLVGRSSGSGLPPVGSKVGHAEKK NIIGSNVQNGHSSAVTELSEIGATLSGLTLSKTRHADENSHMRSQLQVDLDNQLDFSF NMPNGHNQSLQQQFIDKSSAEKLAFPTNHIDLARKKGIAPNINAYNISSNGQVSIPKR TSSSADLYAKVHPSGLGSLEVCDVGHPNVNLANTDFIGQLPSAYSVNQKLNSAIKNHL NAGSPLTGTGDRQSLNRAGNQGADLLSPLMDPRYIQYLQRTSQYGARAAASPDSLLSG NYVGTLHGDLDGLQKAYLEAILAQQKQQYELPLLGKAAALNHGYYGNPSYGLGMPFAG NSMANSVLPSIGSGSIQNDRTARFNSMMRTSTGAWPSDIGNNVDGRFISSLLDEFKNN KTRCFELLDIIDHVVEFSTDQYGSRFIQQKLETATEEEKTKIFPEIIPHARALMTDVF GNYVIQKVYTSLLISISQSSCLYNYNC" mobile_element complement(4659937..4660402) /note="source:CACAO_MITE43_scaffold_3 227 733" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(4660325..4660440) /note="source:CACAO_Mariner_E38_scaffold_2 1515 1629" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(4660979..4661171) /note="source:CACAO_MITE61_scaffold_4 1 231" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(4661109..4661189) /note="source:CACAO_PIF_E31_scaffold_2 4060 4137" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4662668..4662774 /note="source:INTACT19F_F94_scaffold_1-int 14302 14400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4662669..4662758) /note="source:CACAO_M_S_E17754_F49_scaffold_3 1753 1843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4663188..4663302 /note="source:INTACT261_F189_scaffold_2-int 3404 3529" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4664111..4664135) /note="source:scaffold_2_CACTA_0262 3313 3502" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4664136..4664318 /note="source:CACAO_on_E732_scaffold_9 5369 5551" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4664377..4664526 /note="source:scaffold_7_CACTA_0795 3195 3328" /mobile_element_type="transposon:TIR/CACTA" gene complement(4665394..4669891) /locus_tag="TCM_043218" /note="dbxref CacaoGD:Thecc1EG043218" mRNA complement(join(4665394..4665577,4665878..4665895, 4667087..4667153,4668305..4668379,4669249..4669891)) /locus_tag="TCM_043218" /product="WCRKC thioredoxin 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024943t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016235001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15886t00001" CDS complement(join(4665473..4665577,4665878..4665895, 4667087..4667153,4668305..4668379,4669249..4669595)) /locus_tag="TCM_043218" /note="paralog of Thecc1EG024943t1" /codon_start=1 /product="WCRKC thioredoxin 2" /protein_id="EOY18725.1" /db_xref="Phytozome:GSVIVT01016235001" /db_xref="TAIR:AT5G04260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZT6" /translation="MTSESFTLRFSPSLKTLLNSKFPGDPLPCFATPFLKNPCSSFDG LSLKRKTLSFSERINRFGGKFGIFNAWKKDGYLEELDDAPLAVELQQICSESQFDRVI AEAQQLEESLIILWMASWCRKCIYLKPKLEKLAAEYYPRLRFYRVDVNTVPHNLVARA GVTKMPTIQLWRDSKKQAEVIGGHKAYLVVNEVREMIENECTT" gene complement(4672931..4678681) /locus_tag="TCM_043224" /note="dbxref CacaoGD:Thecc1EG043224" mRNA complement(join(4672931..4672971,4674091..4674545, 4674884..4677074,4677163..4677548,4678247..4678681)) /locus_tag="TCM_043224" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:frave:gene10048.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043228t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s38870.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2889t1" CDS complement(join(4674899..4677074,4677163..4677548, 4678247..4678567)) /locus_tag="TCM_043224" /note="paralog of Thecc1EG043228t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY18726.1" /db_xref="Phytozome:POPTR_0001s38870.1" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I6Q9" /translation="MALVGEAFLTASIEVLVDRIASPDVLNLFKGKKLEDVLLKKLKP ALMSVKAVLDDAENKQITNPNVRSWIDELKDAVYDAEDLLDEIATEALRSRMESEDQT STAKQAFVNTSPSLHPNLKAIGEGIVKRCKGLPLAVKALAGLLRCRLDVEDWNKVLNS NLWDITDDILPALRLSYYYLPSHLKRCFAYCSKDYEFQKEELVRLWMAEDLLAYSGEN VNMEELRGSEYFEDLTSRLEGKCSSEIRKKIRHLSNIPKKYDVFKKFEALCEIKSLCT FLTIKSLRLRCWVTNVIMDDFLLKSRSLRLLSLANYENINELSEEIEKLKHLRYLDLS CTSIEMLPNSLTTLYNLQTIILFGCHYLVELPEDMGRLINMHHLDIKGTKLVRMPPGM DKLKDLRTLTDFVLGEGNGSSISELGKLKNLRGTLAISNLQNVVCHRDAKDANLKEKI NLKELELKWSNCCYTNDDSMHDRELLEQLEPHTNLEHLAIEFYRGTRFPELVGHSSFS NLVSLQVRDCIYCFFLPPLGQLSALKSLSISGFSEVVTVGDEFYGKGDASSKPFGSLE ILRFADMSEWEEWFCLKDGAFCLLQELYIEDCPKLTKSLPKHLPSLLKLTIVRCEKLG GLLPRAPSMSELYLNQCDALQLEPLPCGLRNLKIYDSNINYSILEQMVRHCTHLEKLE MGFCYGLKSLPEGSLPTMLKELGIHNCDALDYSKILSYTSLECLEISGNSNHPLESFS IGSFHKLNRLRIRSCKGLKSIGASEGPHQHLACLNFLKIETCPNFISFPDEGLSATNL TTLRLFNCKILKSLPEQMQSLLPSLEDLTIFNCPEIESFPKDGLPSKLKDITIGRSEK LIAGRKDWGLERLPSLTTFQMDDAEEMESFPDEYLLPSTLTKIYIFNLPNLKFLDYKG FQHLSCLRELHISGCPELQSMPVKRLSIPIISIENEFIVKEALWHN" gene complement(4679061..4694625) /locus_tag="TCM_043225" /note="dbxref CacaoGD:Thecc1EG043225" mRNA complement(join(4679061..4679416,4679679..4679741, 4679864..4679907,4680094..4680239,4680617..4680636, 4680993..4681128,4694406..4694625)) /locus_tag="TCM_043225" /product="Transmembrane amino acid transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043231t5" /inference="similar to AA sequence:Phytozome:POPTR_0008s03620.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7607t77" gene complement(4679142..4709859) /locus_tag="TCM_043231" /note="dbxref CacaoGD:Thecc1EG043231" mRNA complement(join(4679142..4679352,4692322..4692384, 4692647..4692709,4692832..4692875,4693062..4693207, 4693586..4693605,4693936..4694074,4694406..4694625, 4694780..4694960,4695784..4695807,4696471..4696685, 4697798..4698117,4699018..4699225,4699330..4699398, 4700043..4700170)) /locus_tag="TCM_043231" /product="Transmembrane amino acid transporter family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021902t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016234001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2925t1; inference alignment:Newbler:10:TSA:cgbaL_g01143t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17186t6" mRNA complement(join(4679171..4679338,4692307..4692384, 4692647..4692709,4692832..4692875,4693062..4693207, 4693586..4693605,4693939..4694074,4694406..4694625, 4694780..4694960,4695784..4695807,4696471..4696685, 4697798..4698117,4699018..4699225,4699330..4699456)) /locus_tag="TCM_043231" /product="Transmembrane amino acid transporter family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021902t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016234001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01143t00002; alternateUTRof:Thecc1EG043231t3; inference alignment:Newbler:10:TSA:cgbaL_g01143t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17186t6" CDS complement(join(4679318..4679338,4692307..4692384, 4692647..4692709,4692832..4692875,4693062..4693207, 4693586..4693605,4693939..4694074,4694406..4694625, 4694780..4694960,4695784..4695807,4696471..4696685, 4697798..4698117,4699018..4699205)) /locus_tag="TCM_043231" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG021902t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 3" /protein_id="EOY18732.1" /db_xref="Phytozome:GSVIVT01016234001" /db_xref="TAIR:AT2G39130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IUW3" /translation="MKNSVSDQSFYIESEDEEDEEKVFNRHEGEDDGNESDVSDSSAE NQQQNKPSSYNTSWPQSYRQSIDLYSSVPSPSIGFLGTPTLSRLGSSFLSSSLTRRHT PESLSAVTKPLVPTVDDQIQPYRRSSHSLLPPIPSRRQSVRVDDKTSKVSHELPISRQ SSYGQAVLNGINVLCGVGILSTPYAAKEGGWLGLIILFTFAVLSFYTGLLLRQCLDSE PGLETYPDIGQAAFGTAGRIAVSIILYVELYACCVEYIILEGDNLSSLFPNAHISLGG FELNSQRLFALMTTLAVLPTVWLRDLSVLSYISAGGVVASVLVVLCLFWVGLVDQVGF HNKGTTLNLASLPVAVGLYGYCYSGHAVFPNIYTSMAKPNQFPSVLIACFGICSLLYA GTAIMGYTMFGEATESQFTLNMPKDLIASKIAVWTTVVNPFTKYALTMSPVAMSLEEL IPSSHLKSHIYAILIRTSLVISTLIVGLSIPFFGLVMSLIGSSLTMLVTLILPPACYL SIVRGKVTRIQTTLCIIVIAVGVVSSAFGTYSALSKIVENLRS" CDS complement(join(4679318..4679416,4679679..4679741, 4679864..4679907,4680094..4680239,4680617..4680636, 4680993..4681128,4694406..4694446)) /locus_tag="TCM_043225" /note="paralog of Thecc1EG043231t5" /codon_start=1 /product="Transmembrane amino acid transporter family protein" /protein_id="EOY18727.1" /db_xref="Phytozome:POPTR_0008s03620.1" /db_xref="TAIR:AT2G39130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IUW3" /translation="MAKPNQFPSVLIACFGIYSLLYAGTAIMGYTMFGEATESQFTLN MPKDLIASRIVVWTTVVNPFTKYALTMSPVAMSLEELISSSHLKSHIYAILIRTSLVI STLIVGLSIPFFGLVMSLIGSLLTMLVTLILPPACYLSILRGKVTRIQATLCLIVIAV GVVSSVFGTYSALSKIVENLRS" CDS complement(join(4679326..4679352,4692322..4692384, 4692647..4692709,4692832..4692875,4693062..4693207, 4693586..4693605,4693936..4694074,4694406..4694625, 4694780..4694960,4695784..4695807,4696471..4696685, 4697798..4698117,4699018..4699205)) /locus_tag="TCM_043231" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021902t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 4" /protein_id="EOY18731.1" /db_xref="Phytozome:GSVIVT01016234001" /db_xref="TAIR:AT2G39130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IUW3" /translation="MKNSVSDQSFYIESEDEEDEEKVFNRHEGEDDGNESDVSDSSAE NQQQNKPSSYNTSWPQSYRQSIDLYSSVPSPSIGFLGTPTLSRLGSSFLSSSLTRRHT PESLSAVTKPLVPTVDDQIQPYRRSSHSLLPPIPSRRQSVRVDDKTSKVSHELPISRQ SSYGQAVLNGINVLCGVGILSTPYAAKEGGWLGLIILFTFAVLSFYTGLLLRQCLDSE PGLETYPDIGQAAFGTAGRIAVSIILYVELYACCVEYIILEGDNLSSLFPNAHISLGG FELNSQRLFALMTTLAVLPTVWLRDLSVLSYISAGGVVASVLVVLCLFWVGLVDQVGF HNKGTTLNLASLPVAVGLYGYCYSGHAVFPNIYTSMAKPNQFPSVLIACFGICSLLYA GTAIMGYTMFGEATESQFTLNMPKDLIASKIAVWTTVVVNPFTKYALTMSPVAMSLEE LIPSSHLKSHIYAILIRTSLVISTLIVGLSIPFFGLVMSLIGSSLTMLVTLILPPACY LSIVRGKVTRIQTTLCIIVIAVGVVSSAFGTYSHSPRLLRI" gene complement(4685020..4691651) /locus_tag="TCM_043228" /note="dbxref CacaoGD:Thecc1EG043228" mRNA complement(join(4685020..4685149,4685278..4685399, 4685584..4685709,4685922..4686134,4686340..4686445, 4687085..4687217,4687711..4691651)) /locus_tag="TCM_043228" /product="NBS type disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g04810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020318t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s38870.1" /note="quality class is strong, express is weak, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2935t1" CDS complement(4687743..4691534) /locus_tag="TCM_043228" /note="paralog of Thecc1EG020318t1" /codon_start=1 /product="NBS type disease resistance protein, putative" /protein_id="EOY18733.1" /db_xref="Phytozome:POPTR_0001s38870.1" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q19PN7" /translation="MALVGEAFLTASIELLVERIASPDVLNLFKGKKLEDGLLKKLKP ALMSVKAVLDDAENKQITNPNVRSWIDELKDAVYDAEDLLDEIATEALRSRLESEDQT SIAKQVRSLFSSLNPFNSGMGSKLEEILETLERLVNQKDILGLKESTGEKSIQRLPAT SLVDESGVYGRHDEKEAIMELLNPEYASANQIDVIPIVGMGGVGKTTLAQLIYNDKRV AEWFDVKAWVCVSEEFDALRITKTILEEITSSSDGSQNLNQLQLKLKGKLLGKKFLFV LDDVWNEKYVDWEELRSPFNAGTKNSKIVVTTRGENVASIMRTVPTYHLSILSDEDCW LLFAKHAFANTSPSMHPDLKEIGEAIAKRCKGLPLAAKALGGLLRCRTDVEDWNKVLN SSLWDITDDILPALRLSYYYLPSHLKHCFAYCSIFPKDYEFRKEELIRLWMAEDPLAY SGKKGNMEELGNEYFKDLTSRSFFQQLSGNKSCFVMHDLISDLAEFVSGEFICRLDGG DRLSCKITKKTRYLSNVQEEYDALKKFEALPEAKGLHTFLTLKSWPRHCYVTNVIMDD LIVKSRSLRVLSLARYHNINELPEEIGKLKQLRYLDLSETSIERLPNSLTTLYNLQTL LLFECKTIVELPEDMGRLINMHHLDIRGTKLVRMPPGMDKLKDLRTLTDFVLGEQNGS SISELGKLENLRGGLAISNLQNVVCHRDAKDANLKEKINLKELVLRWSGDCHRNDDRE ILEQLEPHTNLEHLAIEFYRDTNFPEWVGLSSFSNLVSLQLIDCKFCSFLPPVGQLSS LKSLSIEGFAEVVTVGDEFYGQGDASSKPFGSLEILRFKNMPEWEEWFCLKDGAFCLL QELYMVDCPKLTKSLPKHLPSLMKLKIERCGKLGGLLPRAPSMSELDLQECDALQWEP LPCGLRKLHIYELNMNDSILEQMVRHCTHLEKLKIWHCYGLKSLPEGSLPTTLKELWI RDCNALDYSKILLYTSLERLDIRGNCHHPLESFPIGSFPKLNLLDIDSCEGLKSFRAL EGPHQHHACLNRLLIESCPNFISFPEDGFSATNLTLLYLIDCKNLKSLPEQMQSLFPS LEYFSIQYCPEIESFPKEGLPSKLKLIAIRRSEKLIAGRKDWGLERLPSLTTFRIFDA EEIESFPDEHMLPSTLTRLVIGNLPNLEFLDYKGFQHLTSLRTLVISECPMLQSMPAK GLPISLSSLFLVKCPLLEEIAKRRKVKIGQRLPTCLSLRMTDNSLFSRTIYVSRGPVS I" mRNA complement(join(4691888..4692384,4692647..4692709, 4692832..4692875,4693062..4693164,4693939..4694074, 4694406..4694625,4694780..4694960,4695784..4695807, 4696471..4696685,4697798..4698117,4699018..4699225, 4709752..4709859)) /locus_tag="TCM_043231" /product="Transmembrane amino acid transporter family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021902t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016234001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01143t00002" mRNA complement(join(4692017..4692384,4692647..4692709, 4692832..4692875,4693062..4693207,4693586..4693605, 4693939..4694074,4694406..4694625,4694780..4694960, 4695784..4695807,4696471..4696685,4697798..4698117, 4699018..4699225,4699330..4699398,4700043..4700170)) /locus_tag="TCM_043231" /product="Transmembrane amino acid transporter family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021902t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016234001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2925t8; inference alignment:Newbler:10:TSA:cgbaL_g01143t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17186t6" CDS complement(join(4692286..4692384,4692647..4692709, 4692832..4692875,4693062..4693164,4693939..4694074, 4694406..4694625,4694780..4694960,4695784..4695807, 4696471..4696685,4697798..4698117,4699018..4699205)) /locus_tag="TCM_043231" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021902t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 1" /protein_id="EOY18728.1" /db_xref="Phytozome:GSVIVT01016234001" /db_xref="TAIR:AT2G39130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IUW3" /translation="MKNSVSDQSFYIESEDEEDEEKVFNRHEGEDDGNESDVSDSSAE NQQQNKPSSYNTSWPQSYRQSIDLYSSVPSPSIGFLGTPTLSRLGSSFLSSSLTRRHT PESLSAVTKPLVPTVDDQIQPYRRSSHSLLPPIPSRRQSVRVDDKTSKVSHELPISRQ SSYGQAVLNGINVLCGVGILSTPYAAKEGGWLGLIILFTFAVLSFYTGLLLRQCLDSE PGLETYPDIGQAAFGTAGRIAVSIILYVELYACCVEYIILEGDNLSSLFPNAHISLGG FELNSQRLFALMTTLAVLPTVWLRDLSVLSYISAGGVVASVLVVLCLFWVGLVDQVGF HNKGTTLNLASLPVAVGLYGYCYSGHAVFPNIYTSMAKPNQFPSVLIACFGICSLLYA GTAIMGYTMFGEATESQFTLNMPKDLIASKIAVWTTLIPSSHLKSHIYAILIRTSLVI STLIVGLSIPFFGLVMSLIGSSLTMLVTLILPPACYLSIVRGKVTRIQTTLCIIVIAV GVVSSAFGTYSALSKIVENLRS" CDS complement(join(4692286..4692384,4692647..4692709, 4692832..4692875,4693062..4693207,4693586..4693605, 4693939..4694074,4694406..4694625,4694780..4694960, 4695784..4695807,4696471..4696685,4697798..4698117, 4699018..4699205)) /locus_tag="TCM_043231" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021902t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 3" /protein_id="EOY18730.1" /db_xref="Phytozome:GSVIVT01016234001" /db_xref="TAIR:AT2G39130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IUW3" /translation="MKNSVSDQSFYIESEDEEDEEKVFNRHEGEDDGNESDVSDSSAE NQQQNKPSSYNTSWPQSYRQSIDLYSSVPSPSIGFLGTPTLSRLGSSFLSSSLTRRHT PESLSAVTKPLVPTVDDQIQPYRRSSHSLLPPIPSRRQSVRVDDKTSKVSHELPISRQ SSYGQAVLNGINVLCGVGILSTPYAAKEGGWLGLIILFTFAVLSFYTGLLLRQCLDSE PGLETYPDIGQAAFGTAGRIAVSIILYVELYACCVEYIILEGDNLSSLFPNAHISLGG FELNSQRLFALMTTLAVLPTVWLRDLSVLSYISAGGVVASVLVVLCLFWVGLVDQVGF HNKGTTLNLASLPVAVGLYGYCYSGHAVFPNIYTSMAKPNQFPSVLIACFGICSLLYA GTAIMGYTMFGEATESQFTLNMPKDLIASKIAVWTTVVNPFTKYALTMSPVAMSLEEL IPSSHLKSHIYAILIRTSLVISTLIVGLSIPFFGLVMSLIGSSLTMLVTLILPPACYL SIVRGKVTRIQTTLCIIVIAVGVVSSAFGTYSALSKIVENLRS" mRNA complement(join(<4692308..4692384,4692647..4692709, 4692832..4692875,4693062..4693207,4693586..4693605, 4693939..4694074,4694406..4694625,4694780..4694960, 4695784..4695807,4696471..4696685,4697798..4698117, 4699018..4699225,4699330..4699396,4700041..4700155)) /locus_tag="TCM_043231" /product="Transmembrane amino acid transporter family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021902t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016234001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05621t00001; inference alignment:Newbler:10:TSA:cgbaL_g01143t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17186t6" CDS complement(join(<4692310..4692384,4692647..4692709, 4692832..4692875,4693062..4693207,4693586..4693605, 4693939..4694074,4694406..4694625,4694780..4694960, 4695784..4695807,4696471..4696685,4697798..4698117, 4699018..4699205)) /locus_tag="TCM_043231" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021902t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 2" /protein_id="EOY18729.1" /db_xref="Phytozome:GSVIVT01016234001" /db_xref="TAIR:AT2G39130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IUW3" /translation="MKNSVSDQSFYIESEDEEDEEKVFNRHEGEDDGNESDVSDSSAE NQQQNKPSSYNTSWPQSYRQSIDLYSSVPSPSIGFLGTPTLSRLGSSFLSSSLTRRHT PESLSAVTKPLVPTVDDQIQPYRRSSHSLLPPIPSRRQSVRVDDKTSKVSHELPISRQ SSYGQAVLNGINVLCGVGILSTPYAAKEGGWLGLIILFTFAVLSFYTGLLLRQCLDSE PGLETYPDIGQAAFGTAGRIAVSIILYVELYACCVEYIILEGDNLSSLFPNAHISLGG FELNSQRLFALMTTLAVLPTVWLRDLSVLSYISAGGVVASVLVVLCLFWVGLVDQVGF HNKGTTLNLASLPVAVGLYGYCYSGHAVFPNIYTSMAKPNQFPSVLIACFGICSLLYA GTAIMGYTMFGEATESQFTLNMPKDLIASKIAVWTTVVNPFTKYALTMSPVAMSLEEL IPSSHLKSHIYAILIRTSLVISTLIVGLSIPFFGLVMSLIGSSLTMLVTLILPPACYL SIVRGKVTRIQTTLCIIVIAVGVVSSAFGTYSALSK" gene 4695197..4695808 /locus_tag="TCM_043232" /note="dbxref CacaoGD:Thecc1EG043232" mRNA 4695197..4695808 /locus_tag="TCM_043232" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc245t45" CDS 4695316..4695519 /locus_tag="TCM_043232" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18734.1" /translation="MRRYLRILIQYAQEFTLVEVLYKPRQRAYMPQGVALAIEPRDSC HWLNNFDRSSLKLFLTEASKFAW" gene complement(4709576..4716260) /locus_tag="TCM_043234" /note="dbxref CacaoGD:Thecc1EG043234" mRNA complement(join(4709576..4710491,4710609..4710704, 4710790..4710888,4711926..4711997,4712077..4712178, 4712281..4712373,4713832..4713996,4714986..4716260)) /locus_tag="TCM_043234" /product="DHHC-type zinc finger family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016232001" /inference="similar to AA sequence:Phytozome:GSVIVT01016232001" /note="quality class is strong, express is medium, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2694t1" CDS complement(join(4710399..4710491,4710609..4710704, 4710790..4710888,4711926..4711997,4712077..4712178, 4712281..4712373,4713832..4713996,4714986..4716254)) /locus_tag="TCM_043234" /codon_start=1 /product="DHHC-type zinc finger family protein" /protein_id="EOY18735.1" /db_xref="Phytozome:GSVIVT01016232001" /db_xref="TAIR:AT5G04270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q500Z2" /translation="MVRLRHLEIDKCNRLRYMPCGLGQLTCLTSLPMFKISKRDRHVG GLSELNRLNNLGGQLSIESLTNATLESGTAYLEEKLYLESLFLSWSWDEYSSQWDEEE VLESLRPHPNLKEPQVWMFHGAKFSNWLSSITKLVQIHLNFCKKLRNLPPMDDLPSLK DLDLDGLDALEHVSDIEIDTLTATTFFPSLKFLKISRCPNLKGWWRRRKEDDEDDEES TKASTTELLPHFPCFSTLTIWGCPNLTSLPLFPTLNDELSLRITSGRLLQQTTMMRTK GKITSAATTSSSTTLPLSNLKSLRLSGMENVESVLKEFLQNCCCTSLESLEIECCPEL TSLQTEVHAFTSLQKLMIYECRNLMALPNWIPNLTSLQELAIESCDKLQSLPEGMSRL TNLRLLRIYDCSHLSERCKRDIGADWAEISHSSAGFLNATIFTFLASLCLFSFSVGVL TDPGYVPSSYLPDVEDSSSVSDEEPKKNGVQLKYCDKCAAYKPPRAHHCRVCRRCILR MDHHCLWINNCVGYCNYKAFFNLILYATIGSIHSTITIISCACQKDWNYSGRTPLKIF YVACGAMMLALSATLGTLLGWHIYLITHNMTTIEYYEGIRAAWLAKKSGLSYRHPFDL SVYKNTTLVLGPNMLRWLWPASISYLKDGVSFPTSRDI" gene complement(4716487..4726088) /locus_tag="TCM_043236" /note="dbxref CacaoGD:Thecc1EG043236" mRNA complement(join(4716487..4716520,4724160..4724380, 4724684..4724782,4725606..4726088)) /locus_tag="TCM_043236" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.26 coverage" mobile_element complement(4716791..4716821) /note="source:CACAO_M_S_E31635_F14_scaffold_3 4699 4728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4716822..4717222 /note="source:CACAO_M_E51728_F323_scaffold_7 1 401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4717323..4720323 /note="source:CACAO_M_E84927_F323_scaffold_10 445 3447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4720324..4720353) /note="source:CACAO_M_E53587_F207_scaffold_8 8535 8560" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4720959..4721798) /locus_tag="TCM_043238" /note="dbxref CacaoGD:Thecc1EG043238" mRNA complement(4720959..4721798) /locus_tag="TCM_043238" /product="Disease resistance protein RGA2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011164t1" /inference="similar to AA sequence:ricco:30061.m000284" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage" CDS complement(4721063..4721452) /locus_tag="TCM_043238" /note="dbxref ricco:30061.m000284; paralog of Thecc1EG011164t1" /codon_start=1 /product="Disease resistance protein RGA2, putative" /protein_id="EOY18737.1" /translation="MKGNEMSKKVRIFFSKSNQLSYRLKLGHRVKALSGKLEAISANR IKFGFNERLVESQIQSSEREQTHSFVRLEEVIGRDGDKNAIIELLLEINSEESIRVVP IVGIGGLGKTTLAQMAFNDEKLEHILS" CDS complement(join(4724285..4724380,4724684..4724782, 4725606..4725617)) /locus_tag="TCM_043236" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18736.1" /translation="MLAVVSCGAMALALFATFGTLLGWHIYLITHNMTAIEVLGPNML RWLWPASISHLKDGVSLPTSHDSS" gene complement(4728475..4732032) /locus_tag="TCM_043239" /note="dbxref CacaoGD:Thecc1EG043239" mRNA complement(join(4728475..4729000,4729116..4729211, 4729342..4729396,4730354..4730425,4730505..4730606, 4730715..4730807,4731724..4732032)) /locus_tag="TCM_043239" /product="DHHC-type zinc finger family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23290.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043234t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016232001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00821t00001" CDS complement(join(4729204..4729211,4729342..4729396, 4730354..4730425,4730505..4730606,4730715..4730717)) /locus_tag="TCM_043239" /note="paralog of Thecc1EG043234t1" /codon_start=1 /product="DHHC-type zinc finger family protein" /protein_id="EOY18738.1" /db_xref="Phytozome:GSVIVT01016232001" /db_xref="TAIR:AT5G04270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q500Z2" /translation="MDHHCLWINNCVGYWNYKAFFTLVLYATIGSIHSTIIVISCACQ KDWNYSGRTPLKIFYVACGAMMVALFATLGTLLVL" gene complement(4732674..4734569) /locus_tag="TCM_043241" /note="dbxref CacaoGD:Thecc1EG043241" mRNA complement(join(4732674..4732703,4732878..4734569)) /locus_tag="TCM_043241" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8115t20" mobile_element complement(4732780..4732829) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3236 3279" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(4734246..4734569) /locus_tag="TCM_043241" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18739.1" /translation="MSFGEKLDFSSKIPSVSLKTNKIRTFFRSLHFKENESSRDTIIR SFKCLRVLDLKFSTFEKVSHYICRLKHLRYLDLSWNNDIREVPNFVTRLHNLQTLDLN FCRSL" gene complement(4739214..4740688) /locus_tag="TCM_043244" /note="dbxref CacaoGD:Thecc1EG043244" mRNA complement(4739214..4740688) /locus_tag="TCM_043244" /product="NB-ARC domain-containing disease resistance-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011164t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400011969" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage" gene 4739286..4740687 /locus_tag="TCM_043245" /note="dbxref CacaoGD:Thecc1EG043245" mRNA join(4739286..4739707,4740062..4740687) /locus_tag="TCM_043245" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage" CDS join(4739437..4739707,4740062..4740150) /locus_tag="TCM_043245" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18741.1" /translation="MESIPRKLFNLFSSLSPPTCLSLLPVVKLDNVVRQVNCPSPCGI YLNSGQLNISRCLRLIIFPMSLGNFTSLLQQSKSSVCKICNLATKLASATDLATSCIR SCILQLSILPKSSSFAS" CDS complement(4740116..4740583) /locus_tag="TCM_043244" /note="paralog of Thecc1EG011164t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance-like protein" /protein_id="EOY18740.1" /db_xref="Phytozome:PGSC0003DMP400011969" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HPX6" /translation="MSLFKQLAFVKQNQTFNFVDLELETIREKIVKHCAGVPLAIRAI GSLLCFKRIKSEWSRVLENITQHGHGTGIESILRLSYDHLPSHLEQCFTYCSLFPNDY EIRKHVLIKLWMAQGFIQSLNRGQSLEDVGHDYFMDLLRDLSFKRQKKMIWAI" gene complement(4741384..4744089) /locus_tag="TCM_043246" /note="dbxref CacaoGD:Thecc1EG043246" mRNA complement(join(4741384..4741829,4743982..4744089)) /locus_tag="TCM_043246" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc9589t1" CDS complement(4741413..4741697) /locus_tag="TCM_043246" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18742.1" /translation="MYFLFSIYINWQWYVIMIHKSRDFPSFKNSYNYLSNRQKKMAGG VLFDIAGKVLEGLRPLALRELSLASNVKAELTKLERTVSIIKVVLLYAEE" mobile_element 4749474..4749538 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3177 3242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4753186..4753233 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3195 3242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4754662..4754754 /note="source:scaffold_4_CACTA_0490 3078 3166" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4754677..4754789 /note="source:CACAO_M_E5899_F5_scaffold_2 20719 20786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4759327..4759347) /note="source:scaffold_4_CACTA_0505 16341 16386" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4759348..4759389) /note="source:INTACT134F_F392_scaffold_2-int 5009 5050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4759358..4759418 /note="source:CACAO_Mutator_E1149_scaffold_5 4715 4778" /mobile_element_type="transposon:TIR/Mutator" gene 4760136..4761576 /locus_tag="TCM_043248" /note="dbxref CacaoGD:Thecc1EG043248" mRNA 4760136..4761576 /locus_tag="TCM_043248" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.72 coverage" CDS 4760361..4760606 /locus_tag="TCM_043248" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18743.1" /translation="MQLKSSLQETQEDTQHNLWQENHTSQAFRWYLRQYKRASHPPEK GKQILSKHKMIDMIDIPSERHHEDTTKESKYLAGEGK" mobile_element 4761360..4761573 /note="source:INTACT166_F161_scaffold_4-int 43 260" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4761574..4761667 /note="source:scaffold_9_CACTA_0936 328 421" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4761656..4762033 /note="source:INTACT166_F161_scaffold_4-int 266 652" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4762055..4763515 /note="source:INTACT166_F161_scaffold_4-int 738 2209" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4763519..4768471 /note="source:INTACT19_F111_scaffold_6-int 9810 14904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4769076..4769174 /note="source:INTACT19_F111_scaffold_6-int 15631 15718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4769214..4770594) /note="source:INTACT674_F296_scaffold_6-int 4589 5895" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4773732..4775959) /locus_tag="TCM_043250" /note="dbxref CacaoGD:Thecc1EG043250" mRNA complement(join(4773732..4774433,4774667..4774755, 4775114..4775271,4775651..4775959)) /locus_tag="TCM_043250" /product="RNA polymerase Rpb8, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032430t1" /inference="similar to AA sequence:TAIR:AT3G59600.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(join(4774295..4774433,4774667..4774755, 4775114..4775271,4775651..4775723)) /locus_tag="TCM_043250" /note="paralog of Thecc1EG032430t1" /codon_start=1 /product="RNA polymerase Rpb8, putative" /protein_id="EOY18744.1" /db_xref="TAIR:AT3G59600.1" /translation="MSKADHVIFQQVFVVHKADQEINGVTSIEARSQLHKILMQLDVD TERYPMKVGDTFLLSLAYTLYLDGETQTDYNFPEKKETLVDSYEYVRQGKLNNVTMEK ESSTMEISFSFGDLFMLLKGDPSRLSHLEHEKKLFLLISKLPYKKPIWTV" gene 4777566..4780148 /locus_tag="TCM_043251" /note="dbxref CacaoGD:Thecc1EG043251" mRNA join(4777566..4778178,4780032..4780148) /locus_tag="TCM_043251" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 4777693..4777926 /locus_tag="TCM_043251" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18745.1" /translation="MSRLFDTLKFNVDGTSKRKPREVSTGGVIRDEVGAVKHMFSKVV GVMDCKAVELVAMKEVFMMFGSSKRVYCYGYFL" mobile_element complement(4780129..4780391) /note="source:scaffold_1_CACTA_0028 11575 11953" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4781688..4782840) /note="source:CACAO_Again_on_E108_scaffold_4 231 1918" /mobile_element_type="transposon:TIR/hAT" mobile_element 4784036..4784612 /note="source:CACAO_Again_on_E207_scaffold_9 1291 1862" /mobile_element_type="transposon:TIR/hAT" gene 4786524..4787201 /locus_tag="TCM_043252" /note="dbxref CacaoGD:Thecc1EG043252" mRNA 4786524..4787201 /locus_tag="TCM_043252" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:28601.m000066" /inference="similar to AA sequence:Phytozome:POPTR_0010s23300.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03455t00001" CDS 4786602..4786910 /locus_tag="TCM_043252" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18746.1" /db_xref="Phytozome:POPTR_0010s23300.1" /translation="MPTTLFFMFLLYFFLLLSPPPVMIGMNSMAIVGGATRPLVSKSP GLVTFKPETGTKHGFHSQDVKNCLPKGFHRTSAPSRYINDHTFGSTMCSTTSDISTRP " mobile_element complement(4787819..4788393) /note="source:CACAO_MITE75_scaffold_4 397 945" /mobile_element_type="transposon:TIR/MITE" mobile_element 4788859..4789278 /note="source:CACAO_MITE_S227_scaffold_9 557 983" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(4789746..4789846) /note="source:CACAO_PIF_E119_scaffold_3 2595 2695" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4789761..4789922 /note="source:scaffold_6_CACTA_0712 1306 1483" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4789782..4789927 /note="source:CACAO_M_E12463_F12_scaffold_3 4563 4710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4792174..4792231) /note="source:CACAO_M_S_E68196_F233_scaffold_6 1281 1335" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4795246..4798637 /locus_tag="TCM_043254" /note="dbxref CacaoGD:Thecc1EG043254" mRNA join(4795246..4795319,4796761..4796854,4797542..4798637) /locus_tag="TCM_043254" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043228t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s38870.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2674t1" CDS 4797685..4798563 /locus_tag="TCM_043254" /note="paralog of Thecc1EG043228t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY18747.1" /db_xref="Phytozome:POPTR_0001s38870.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BJQ9" /translation="MAGALVGEAFLSASIEVLVERIASRDVLNLIKGKSLEDGLLKKL KPALMSVKAVLNDAESRQVKDPDVRSWIDELKDAVYDAEDFLDEIATEALRSRLESED QTSTAKQVCSFFSSVNPFNRGMGSKLEEILERLEYLVNQKDILGLKESRGEKSFQRPP ATSLVDESAVCGRNDEKEAIMELLNPEYASANLIDVIPVVGMGGVGKTTLAQLIYNDK RVEEWFDVKAWVCVSEEFDALRVTKTILEEITSSSDGSQNLNQLQLKLKEKLLGKKFL FVLDDVWNEKYVDWEE" gene 4798686..4801927 /locus_tag="TCM_043255" /note="dbxref CacaoGD:Thecc1EG043255" mRNA join(4798686..4801480,4801849..4801927) /locus_tag="TCM_043255" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g022170.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043228t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013307001" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc286t117" CDS 4798735..4801461 /locus_tag="TCM_043255" /note="paralog of Thecc1EG043228t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY18748.1" /db_xref="Phytozome:GSVIVT01013307001" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I6Q9" /translation="MSPNLKEIGEAIAKRCKGLPLAAKTLGGLLRCRTDVEDWNKVLN SSLWDITDDILPALRLSYYYLPSHLKRCFAYCSIFPKDYEFRKEELIRLWMAEDFLAY SGEVVNMEDRGNEYFKDLTSRSFFQQLSGNKSCFVMHDLISDLAKSVSGEFICRLDSG DRFSCKITKRTRYFSNVQEEYDILKRFEALAEAKGLHTFLTLESWAWGCYVTNAIMDD LIIKFRSLRVLSLAHYHNIDELSEEIGKLKQLRYLDLSETSIERLPNSLTTLYNLQTL LLFECEKLVELPEDVGRLINMHHLDIRGTKLVRMPPRMDKLKDLQILTDFVLGEQKGS SISELGKLKNLRGRLAISNLQNVVCHRDAKDANSKEKINLRELELKWSEDCHTNDDSK HDREILEQLEPHTNLEHLAIEFYRGTRFPEWVGHSSFSNLVSLHLRGCKFCLFLPPLG RLSSLKSLSISGFSEAVTVGDEFYGQGDASSKPFGSLEILSFADMSEWEEWFCLNDGA FPLLQKLYIEDCPKLTKSLPKHLPSLMKLKVVRCGKLGGLLPRAPSMSELDLQECDAL QWEPFACGLRNLKISQLNINDSNINDSILEQMVRHCTHLEKLEMWYCNGLKSLPEGSL PTTLKELRINHCNALDYSKILLYTSLERLSMHDVSDHLLESSSIGSLPKLNNLQIRSC EGLKSIRIGSLPKLNDLYIKSDEDLKSFLALEGPHPHLPCLKYFKIKCCPNFISFPEE GFSATNLKSLNLSDCKNLKSLPEQMQSLFPSLVLLSIFKCPEIESFPKEGLPSKLKNI TIGRSEKLIAGRKDWGLETLPSLTTFEIHDAEEIESFPDEHLLPSSLTRLKVCNLPNL KFLDYEGFQHLTSLRELRISKCPELQSMPVKRLPIPIIWIDDELIMKEALLA" mobile_element 4811741..4811836 /note="source:scaffold_9_CACTA_0946 17761 17853" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4812105..4812293) /note="source:scaffold_7_CACTA_0795 2862 3060" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4815942..4816063 /note="source:CACAO_on_E10_scaffold_2 2931 3053" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(4816064..4816083) /note="source:scaffold_7_CACTA_0789 1848 1988" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4821892..4822107) /note="source:CACAO_PIF_E144_scaffold_10 2144 2360" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4822642..4823520 /note="source:scaffold_9_CACTA_0932 2788 3608" /mobile_element_type="transposon:TIR/CACTA" gene 4824244..4829863 /locus_tag="TCM_043259" /note="dbxref CacaoGD:Thecc1EG043259" mRNA join(4824244..4824565,4824876..4824955,4826723..4826806, 4826988..4827082,4827282..4827390,4828516..4828775) /locus_tag="TCM_043259" /product="Ras-related small GTP-binding family protein isoform 4" /inference="alignment:exonerate- protein:2:TAIR:AT3G54840.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029326t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016227001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8065t8; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4316t1" mRNA join(4824244..4824565,4824876..4824955,4826723..4826806, 4826988..4827082,4827282..4827390,4828516..4828602, 4828691..>4828775) /locus_tag="TCM_043259" /product="Ras-related small GTP-binding family protein isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT3G54840.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029326t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016227001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8065t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4316t1" mRNA join(4824246..4824565,4824876..4824955,4826723..4826806, 4826988..4827082,4827282..4827387,4828513..4828602, 4828691..4828777,4829446..4829863) /locus_tag="TCM_043259" /product="Ras-related small GTP-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G54840.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029326t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016227001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4316t1" mRNA join(4824284..4824565,4824876..4824955,4826723..4826809, 4826988..4827082,4827282..4827387,4828513..4828602, 4828691..4828777,4829446..4829843) /locus_tag="TCM_043259" /product="Ras-related small GTP-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G54840.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029326t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016227001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2875t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4316t1" CDS join(4824541..4824565,4824876..4824955,4826723..4826809, 4826988..4827082,4827282..4827387,4828513..4828602, 4828691..4828777,4829446..4829484) /locus_tag="TCM_043259" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029326t1" /codon_start=1 /product="Ras-related small GTP-binding family protein isoform 2" /protein_id="EOY18750.1" /db_xref="Phytozome:GSVIVT01016227001" /db_xref="TAIR:AT3G54840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CB01" /translation="MGCSSSLPDRSAGRLSGLNNAENSGVPDAKNLRVKLVLLGDSGV GKSCIVLRFVRGQFDPTSKVVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAP LYYRGAGVAVIVYDITSPESFTKAQYWVKELQKHGSPDIVMALVGNKADLHENREVPV QDGIDYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSSS" CDS join(4824541..4824565,4824876..4824955,4826723..4826806, 4826988..4827082,4827282..4827387,4828513..4828602, 4828691..4828777,4829446..4829484) /locus_tag="TCM_043259" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029326t1" /codon_start=1 /product="Ras-related small GTP-binding family protein isoform 1" /protein_id="EOY18749.1" /db_xref="Phytozome:GSVIVT01016227001" /db_xref="TAIR:AT3G54840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CB01" /translation="MGCSSSLPDRSAGRLSGLNNAENSGVPDAKNLRVKLVLLGDSGV GKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPL YYRGAGVAVIVYDITSPESFTKAQYWVKELQKHGSPDIVMALVGNKADLHENREVPVQ DGIDYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSSS" CDS join(4824541..4824565,4824876..4824955,4826723..4826806, 4826988..4827082,4827282..4827390,4828516..4828602, 4828691..>4828774) /locus_tag="TCM_043259" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG029326t1" /codon_start=1 /product="Ras-related small GTP-binding family protein isoform 3" /protein_id="EOY18751.1" /db_xref="Phytozome:GSVIVT01016227001" /db_xref="TAIR:AT3G54840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CB01" /translation="MGCSSSLPDRSAGRLSGLNNAENSGVPDAKNLRVKLVLLGDSGV GKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPL YYRGAGVAVIVYDITSPESFTKAQYWVKVLQKHGSPDIVMALVGNKADLHENREVPVQ DGIDYAEKNGMFFIETSAKTADNINQLF" CDS join(4824541..4824565,4824876..4824955,4826723..4826806, 4826988..4827082,4827282..4827390,4828516..4828620) /locus_tag="TCM_043259" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG029326t2" /codon_start=1 /product="Ras-related small GTP-binding family protein isoform 4" /protein_id="EOY18752.1" /db_xref="Phytozome:GSVIVT01016227001" /db_xref="TAIR:AT3G54840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CB01" /translation="MGCSSSLPDRSAGRLSGLNNAENSGVPDAKNLRVKLVLLGDSGV GKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPL YYRGAGVAVIVYDITSPESFTKAQYWVKVLQKHGSPDIVMALVGNKADLHENREVPVQ VSAKI" gene 4830382..4835344 /locus_tag="TCM_043260" /note="dbxref CacaoGD:Thecc1EG043260" mRNA join(4830382..4830960,4831507..4831757,4831861..4831980, 4832076..4832155,4832230..4832255,4832480..4832519, 4832746..4832816,4832899..4832946,4833044..4833103, 4833185..4833245,4833335..4833447,4833527..4833973, 4834088..4834223,4834528..4834595,4834785..4835344) /locus_tag="TCM_043260" /product="Splicing factor U2af large subunit A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g43500.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000427t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400000677" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc381t10" mRNA join(4830658..4830960,4831507..4831757,4831861..4831980, 4832076..4832155,4832746..4832816,4832899..4832946, 4833044..4833245,4833335..4833447,4833527..4833973, 4834088..4834223,4834528..4834595,4834785..4834973) /locus_tag="TCM_043260" /product="Splicing factor U2af large subunit A isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g43500.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000427t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400000677" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc381t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc381t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2937t1" mRNA join(4830669..4830960,4831507..4831757,4831861..4831980, 4832076..4832155,4832746..4832816,4832899..4832946, 4833044..4833103,4833185..4833245,4833335..4833447, 4833527..4833973,4834088..4834223,4834348..4834595, 4834785..4835186) /locus_tag="TCM_043260" /product="Splicing factor U2af large subunit A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g43500.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000427t2" /inference="similar to AA sequence:ricco:29646.m001075" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2937t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc381t10; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4320t1" mRNA join(4830669..4830960,4831507..4831757,4831861..4831980, 4832076..4832155,4832746..4832816,4832899..4832946, 4833044..4833103,4833185..4833245,4833335..4833447, 4833527..4833973,4834088..4834223,4834528..4834595, 4834785..4835186) /locus_tag="TCM_043260" /product="Splicing factor U2af large subunit A isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g43500.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000427t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400000677" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2937t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc381t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2937t1" CDS join(4830844..4830960,4831507..4831757,4831861..4831980, 4832076..4832155,4832230..4832255,4832480..4832519, 4832746..4832816,4832899..4832946,4833044..4833103, 4833185..4833245,4833335..4833447,4833527..4833973, 4834088..4834223,4834528..4834595,4834785..4834922) /locus_tag="TCM_043260" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG000427t2" /codon_start=1 /product="Splicing factor U2af large subunit A isoform 1" /protein_id="EOY18753.1" /db_xref="Phytozome:PGSC0003DMP400000677" /db_xref="TAIR:AT4G36690.4" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JQG2" /translation="MTDYEEARYQGNGDNLDNSYGGGSSPQPRPDDQNDSKSQQGSRD YERESSRSREKDREKGRDKERDKDRDRHRERDRDREKDRDRDRHHRDRHRDRSRERSE RRDRGRDRDDDDYYRSRDYDRRRDYDRDKEDRHRCRSQSRSRGRSEHRSKSRSRSRSR SKSKRISGFDMAPPASAMLAAGAAAAAAAVWKVRIKILLLCTRRIQCTSFDGQIPGTS PTLPGVFPNMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATF FSHVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMAVDGIIFEGAPVK VRRPSDYNPSLAATLGPSQPNPSLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ IRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV RRANQGATQPKPEQESILQHAQQQIALQRLILQPQGVPTNVVCLTQALNVDDLRDDEE YEDIVEDMRQEGGKYGALVNVVIPRPNPSGEAAPGVGKVFLEYLDDEGSKKAQGAMNG RKFGGNQVIAVFYPENKFAQGEYDG" CDS join(4830844..4830960,4831507..4831757,4831861..4831980, 4832076..4832155,4832746..4832816,4832899..4832946, 4833044..4833245,4833335..4833447,4833527..4833973, 4834088..4834223,4834528..4834595,4834785..4834922) /locus_tag="TCM_043260" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG000427t2" /codon_start=1 /product="Splicing factor U2af large subunit A isoform 4" /protein_id="EOY18756.1" /db_xref="Phytozome:PGSC0003DMP400000677" /db_xref="TAIR:AT4G36690.4" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JQG2" /translation="MTDYEEARYQGNGDNLDNSYGGGSSPQPRPDDQNDSKSQQGSRD YERESSRSREKDREKGRDKERDKDRDRHRERDRDREKDRDRDRHHRDRHRDRSRERSE RRDRGRDRDDDDYYRSRDYDRRRDYDRDKEDRHRCRSQSRSRGRSEHRSKSRSRSRSR SKSKRISGFDMAPPASAMLAAGAAAAAAAGQIPGTSPTLPGVFPNMFPLATGQPFGAL PVMPVQAMTQQATRHARRVYVGGLPPTANEQVLLSTVEALLLLCFHIKPIVTLAIILQ SVATFFSHVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMAVDGIIFE GAPVKVRRPSDYNPSLAATLGPSQPNPSLNLAAVGLTPGSAGGLEGPDRIFVGGLPYY FTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD KTLTVRRANQGATQPKPEQESILQHAQQQIALQRLILQPQGVPTNVVCLTQALNVDDL RDDEEYEDIVEDMRQEGGKYGALVNVVIPRPNPSGEAAPGVGKVFLEYLDDEGSKKAQ GAMNGRKFGGNQVIAVFYPENKFAQGEYDG" CDS join(4830844..4830960,4831507..4831757,4831861..4831980, 4832076..4832155,4832746..4832816,4832899..4832946, 4833044..4833103,4833185..4833245,4833335..4833447, 4833527..4833973,4834088..4834223,4834528..4834595, 4834785..4834922) /locus_tag="TCM_043260" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG000427t2" /codon_start=1 /product="Splicing factor U2af large subunit A isoform 3" /protein_id="EOY18755.1" /db_xref="Phytozome:PGSC0003DMP400000677" /db_xref="TAIR:AT4G36690.4" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JQG2" /translation="MTDYEEARYQGNGDNLDNSYGGGSSPQPRPDDQNDSKSQQGSRD YERESSRSREKDREKGRDKERDKDRDRHRERDRDREKDRDRDRHHRDRHRDRSRERSE RRDRGRDRDDDDYYRSRDYDRRRDYDRDKEDRHRCRSQSRSRGRSEHRSKSRSRSRSR SKSKRISGFDMAPPASAMLAAGAAAAAAAGQIPGTSPTLPGVFPNMFPLATGQPFGAL PVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMAAIGGNTAGPGDAVVNV YINHEKKFAFVEMRSVEEASNAMAVDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNP SLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGATQPKPEQESILQHAQ QQIALQRLILQPQGVPTNVVCLTQALNVDDLRDDEEYEDIVEDMRQEGGKYGALVNVV IPRPNPSGEAAPGVGKVFLEYLDDEGSKKAQGAMNGRKFGGNQVIAVFYPENKFAQGE YDG" CDS join(4830844..4830960,4831507..4831757,4831861..4831980, 4832076..4832155,4832746..4832816,4832899..4832946, 4833044..4833103,4833185..4833245,4833335..4833447, 4833527..4833973,4834088..4834223,4834348..4834433) /locus_tag="TCM_043260" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29646.m001075; paralog of Thecc1EG000427t2" /codon_start=1 /product="Splicing factor U2af large subunit A isoform 2" /protein_id="EOY18754.1" /db_xref="TAIR:AT4G36690.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JQG2" /translation="MTDYEEARYQGNGDNLDNSYGGGSSPQPRPDDQNDSKSQQGSRD YERESSRSREKDREKGRDKERDKDRDRHRERDRDREKDRDRDRHHRDRHRDRSRERSE RRDRGRDRDDDDYYRSRDYDRRRDYDRDKEDRHRCRSQSRSRGRSEHRSKSRSRSRSR SKSKRISGFDMAPPASAMLAAGAAAAAAAGQIPGTSPTLPGVFPNMFPLATGQPFGAL PVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMAAIGGNTAGPGDAVVNV YINHEKKFAFVEMRSVEEASNAMAVDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNP SLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRET GNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGATQPKPEQESILQHAQ QQIALQRLILQPQGVPTNVVCLTQALNVDDLRDDEEYEDIVEDMRQEGGKYALSCSTF CYKESSLTYRQKTPNPLSIFT" gene 4835947..4839068 /locus_tag="TCM_043261" /note="dbxref CacaoGD:Thecc1EG043261" mRNA join(4835947..4836162,4836300..4836460,4836549..4836605, 4836706..4836798,4837431..4837509,4837654..4837778, 4838327..4838470,4838562..4839047) /locus_tag="TCM_043261" /product="3'-5'-exoribonuclease family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035933001" /inference="similar to AA sequence:Phytozome:POPTR_0014s16420.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9344t5; inference alignment:Newbler:10:TSA:cgbaB_g02820t00001" mRNA join(4835947..4836162,4836334..4836460,4836549..4836605, 4836706..4836798,4837431..4837491,4837654..4837778, 4838327..4838470,4838562..4839047) /locus_tag="TCM_043261" /product="3'-5'-exoribonuclease family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035933001" /inference="similar to AA sequence:Phytozome:POPTR_0014s16420.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9344t4; inference alignment:Newbler:10:TSA:cgbaB_g02820t00001" mRNA join(4835947..4836162,4836334..4836460,4836549..4836605, 4836706..4836798,4837436..4837509,4837654..4837778, 4838327..4838470,4838562..4839047) /locus_tag="TCM_043261" /product="3\'-5\'-exoribonuclease family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035933001" /inference="similar to AA sequence:Phytozome:POPTR_0014s16420.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9344t3; inference alignment:Newbler:10:TSA:cgbaB_g02820t00001" mRNA join(4835980..4836162,4836334..4836460,4836549..4836605, 4836706..4836798,4837431..4837509,4837651..4837778, 4838327..4838470,4838562..4839045) /locus_tag="TCM_043261" /product="3'-5'-exoribonuclease family protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035933001" /inference="similar to AA sequence:Phytozome:POPTR_0014s16420.2" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2729t1; inference alignment:Newbler:10:TSA:cgbaB_g02820t00001" mRNA join(4835980..4836162,4836334..4836460,4836549..4836605, 4836706..4836798,4837431..4837509,4837654..4837778, 4838327..4838470,4838562..4839045) /locus_tag="TCM_043261" /product="3'-5'-exoribonuclease family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035933001" /inference="similar to AA sequence:Phytozome:POPTR_0014s16420.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2729t3; alternateUTRof:Thecc1EG043261t2; inference alignment:Newbler:10:TSA:cgbaB_g02820t00001" mRNA join(4836016..4836162,4836334..4836448,4836549..4836605, 4836706..4836798,4837431..4837509,4837654..4837778, 4838327..4838470,4838562..4839068) /locus_tag="TCM_043261" /product="3'-5'-exoribonuclease family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035933001" /inference="similar to AA sequence:Phytozome:POPTR_0014s16420.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02820t00001" mRNA join(4836299..4836414,4836549..4836605,4836706..4836798, 4837431..4837509,4837654..4837778,4838327..4838470, 4838562..4839068) /locus_tag="TCM_043261" /product="3\'-5\'-exoribonuclease family protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035933001" /inference="similar to AA sequence:Phytozome:POPTR_0014s16420.2" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b041742t1a2; inference alignment:Newbler:10:TSA:cgbaB_g02820t00001" CDS join(4836301..4836414,4836549..4836605,4836706..4836798, 4837431..4837509,4837654..4837778,4838327..4838470, 4838562..4838801) /locus_tag="TCM_043261" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="3\'-5\'-exoribonuclease family protein isoform 6" /protein_id="EOY18762.1" /db_xref="Phytozome:POPTR_0014s16420.2" /db_xref="TAIR:AT3G07750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSE1" /translation="MITSLFFWIYKNGGAFCWRKTFHTRWNCSRPSFGWSKKAHGSAR IRLGATDVIASVKAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVA LQRCLLGGKSGSGSGIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALS NTGIPKVNVASETSGDEQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEE SQISSAISISINRKGHICGLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAA EANEEES" CDS join(4836335..4836460,4836549..4836605,4836706..4836798, 4837431..4837509,4837651..4837778,4838327..4838470, 4838562..4838801) /locus_tag="TCM_043261" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="3'-5'-exoribonuclease family protein isoform 7" /protein_id="EOY18763.1" /db_xref="Phytozome:POPTR_0014s16420.2" /db_xref="TAIR:AT3G07750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSE1" /translation="MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAH GSARIRLGATDVIASVKAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTE LSVALQRCLLGGKSGSAGSGIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAI KAALSNTGIPKVNVASETSGDEQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDA TSEEESQISSAISISINRKGHICGLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDS EIAAAEANEEES" CDS join(4836335..4836460,4836549..4836605,4836706..4836798, 4837431..4837509,4837654..4837778,4838327..4838470, 4838562..4838801) /locus_tag="TCM_043261" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="3'-5'-exoribonuclease family protein isoform 2" /protein_id="EOY18758.1" /db_xref="Phytozome:POPTR_0014s16420.2" /db_xref="TAIR:AT3G07750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSE1" /translation="MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAH GSARIRLGATDVIASVKAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTE LSVALQRCLLGGKSGSGSGIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIK AALSNTGIPKVNVASETSGDEQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDAT SEEESQISSAISISINRKGHICGLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSE IAAAEANEEES" CDS join(4836335..4836460,4836549..4836605,4836706..4836798, 4837431..4837509,4837654..4837778,4838327..4838470, 4838562..4838801) /locus_tag="TCM_043261" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="3'-5'-exoribonuclease family protein isoform 2" /protein_id="EOY18759.1" /db_xref="Phytozome:POPTR_0014s16420.2" /db_xref="TAIR:AT3G07750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSE1" /translation="MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAH GSARIRLGATDVIASVKAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTE LSVALQRCLLGGKSGSGSGIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIK AALSNTGIPKVNVASETSGDEQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDAT SEEESQISSAISISINRKGHICGLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSE IAAAEANEEES" CDS join(4836335..4836460,4836549..4836605,4836706..4836798, 4837431..4837491,4837654..4837778,4838327..4838470, 4838562..4838801) /locus_tag="TCM_043261" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="3'-5'-exoribonuclease family protein isoform 5" /protein_id="EOY18761.1" /db_xref="Phytozome:POPTR_0014s16420.2" /db_xref="TAIR:AT3G07750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSE1" /translation="MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAH GSARIRLGATDVIASVKAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTE LSVALQRCLLGSGIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT GIPKVNVASETSGDEQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQ ISSAISISINRKGHICGLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEA NEEES" CDS join(4836335..4836448,4836549..4836605,4836706..4836798, 4837431..4837509,4837654..4837778,4838327..4838470, 4838562..4838801) /locus_tag="TCM_043261" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="3'-5'-exoribonuclease family protein isoform 1" /protein_id="EOY18757.1" /db_xref="Phytozome:POPTR_0014s16420.2" /db_xref="TAIR:AT3G07750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSE1" /translation="MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGAHGSAR IRLGATDVIASVKAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVA LQRCLLGGKSGSGSGIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALS NTGIPKVNVASETSGDEQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEE SQISSAISISINRKGHICGLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAA EANEEES" CDS join(4836435..4836460,4836549..4836605,4836706..4836798, 4837436..4837509,4837654..4837778,4838327..4838470, 4838562..4838801) /locus_tag="TCM_043261" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="3\'-5\'-exoribonuclease family protein isoform 4" /protein_id="EOY18760.1" /db_xref="Phytozome:POPTR_0014s16420.2" /db_xref="TAIR:AT3G07750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSE1" /translation="MLKLELFLRRMVRQELGLVQLMLLPVLRQSLENQVHCNLTKERL LYMLIVVQLQHQCLRGGEELSTELSVALQRCLLGGKSGSGSGIDPSSLVIVEGKVCWD LYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVASETSGDEQPEVNISDEEFLQF DTSGIPVIVTLTKVGRHYIVDATSEEESQISSAISISINRKGHICGLTKRGGAGLDPS IILDMISVAKHVSEQLINKLDSEIAAAEANEEES" mRNA join(<4837429..4837509,4837654..4837778,4838327..4838470, 4838562..4839047) /locus_tag="TCM_043261" /product="3'-5'-exoribonuclease family protein isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035933001" /inference="similar to AA sequence:Phytozome:POPTR_0014s16420.2" /note="transcript variant 8; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc356t5; inference alignment:Newbler:10:TSA:cgbaB_g02820t00001" CDS join(<4837431..4837509,4837654..4837778,4838327..4838470, 4838562..4838801) /locus_tag="TCM_043261" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="3'-5'-exoribonuclease family protein isoform 8" /protein_id="EOY18764.1" /db_xref="Phytozome:POPTR_0014s16420.2" /db_xref="TAIR:AT3G07750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSE1" /translation="GRGGEELSTELSVALQRCLLGGKSGSGSGIDPSSLVIVEGKVCW DLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVASETSGDEQPEVNISDEEFLQ FDTSGIPVIVTLTKVGRHYIVDATSEEESQISSAISISINRKGHICGLTKRGGAGLDP SIILDMISVAKHVSEQLINKLDSEIAAAEANEEES" gene 4839355..4840554 /locus_tag="TCM_043262" /note="dbxref CacaoGD:Thecc1EG043262" mRNA 4839355..4840554 /locus_tag="TCM_043262" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s08710.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2723t1" CDS 4839445..4840266 /locus_tag="TCM_043262" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18765.1" /translation="MSSSNNSGKVLKLKSKDNQIFEVEESVAIQSELIKNMVEAGCDI GVIPLLMVHSKTLRNVIEWCQKHVDYVEENDNESNEEEVKNWESEICEEENNNGSDEE EIRNWESEICEEENNNGSDEEEIRNWESEICEEENNGSDEEEIKNWESEENNDGSDKE EVTNWESEENNAGSDNDELRNWESEENNAGSDNDELKNWESKFVDIDKDSLYELLLAA DYLNIDSLLDRVIKQVADMIKASRSVEEVRQTFGIKSDFTPEEEEEIRKEISWID" mobile_element complement(4840780..4841116) /note="source:CACAO_Again_on_E212_scaffold_9 243 594" /mobile_element_type="transposon:TIR/hAT" mobile_element 4840987..4841225 /note="source:CACAO_Again_on_E86_scaffold_3 364 675" /mobile_element_type="transposon:TIR/hAT" gene 4841129..4842117 /locus_tag="TCM_043263" /note="dbxref CacaoGD:Thecc1EG043263" mRNA join(4841129..4841489,4841566..4842117) /locus_tag="TCM_043263" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032319t1" /inference="similar to AA sequence:ricco:30101.m000384" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage" CDS join(4841248..4841489,4841566..4841908) /locus_tag="TCM_043263" /note="dbxref ricco:30101.m000384; paralog of Thecc1EG032319t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18766.1" /translation="MMDRIQPYGYVCHGCKVAGRYIEHCPTNDDPNYDFRRVKPTTAS SKASASSSSSSFGDNMIPLGFYWPLCKKVMKDAALTKKIVAADILPSMTLRDTINRNL NQSGSRNSDNGGASFSIQDTASKADQKTEIIVPPQHTSEKVKQPTPKGSVPACGKRRA TEEGNFGCDGTEKEEEGLHGPKLPTVANLPICWS" gene complement(4842226..4848420) /locus_tag="TCM_043264" /note="dbxref CacaoGD:Thecc1EG043264" mRNA complement(join(4842226..4843688,4844157..4844715, 4847898..4848420)) /locus_tag="TCM_043264" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s03620.1" /inference="similar to AA sequence:ricco:29977.m000259" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2727t1" CDS complement(join(4842438..4843688,4844157..4844465)) /locus_tag="TCM_043264" /note="dbxref ricco:29977.m000259" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY18767.1" /db_xref="TAIR:AT1G07590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940Q2" /translation="MQALALLRQRRLFRAIHQTLDTTASSLKFLCSRTADNLQGQTSE PKTDEPKCLSLRIERLPKGETVGSAFKSWMADGFPVHRGDIFHAINRLRKLKLNKRAL EVMEWVIRERPYRPKELDYSYLLEFTTKLHGMSQGEKLFSCVPQEFQNELLCNNLVIA CLDKGMIRLSLEYMKKMRELRHPISHLVFNRLIILHSSPGRRKTIPKILNQMKADKVV RHVSTYNILMKIEANEHNIEGLVKVFNDMKRVEVEPNEISYCILATAHAVARLYTAAE AYVEAVVKAMTGNNWSTLDVLIILYGYLGKGKELERTWGTIQEFTHVRSKSYMLAIEA YGRIEQLSQAEELWLQMKSIKGLKLTEQFNSMISVYCKHGLISKATGVFREMRMNGCK PNSITFRHLALGCLKAGLVEESLKTLDMGMNFPTSNKVRCSTPWLETTFCMIEIFAEK GDVKNVEKLFEELKRANYTRYTFVYNTLIKAYVKAKIYDPNLLKRMILGGARPDAETY SLLKLGEQLQR" mobile_element 4848195..4848273 /note="source:scaffold_10_CACTA_0127 7379 7450" /mobile_element_type="transposon:TIR/CACTA" gene 4849600..4854132 /locus_tag="TCM_043265" /note="dbxref CacaoGD:Thecc1EG043265" mRNA join(4849600..4850348,4851679..4851795,4852127..4852540, 4852648..4854132) /locus_tag="TCM_043265" /product="U-box domain-containing protein 14" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041859t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s03560.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc478t7" CDS join(4850058..4850348,4851679..4851795,4852127..4852540, 4852648..4853739) /locus_tag="TCM_043265" /note="paralog of Thecc1EG041859t2" /codon_start=1 /product="U-box domain-containing protein 14" /protein_id="EOY18768.1" /db_xref="Phytozome:POPTR_0008s03560.1" /db_xref="TAIR:AT3G54850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZ40" /translation="MIMGPTGDSKGELLSQLAELVKEITGLPDCKNSCKKTHGNLVRR IKLLSPLFEELRDGNEETMIKIEEIKGFELLKVALGSAKELLQSVNEGSKLYQALQKD QITDKFQLMTETIEAALNEIPYDKLDISEEVREQIELVHTQFRRASRRPDSPDLQLDQ DLAIAQKEKDPDPAILKRLSDKLQLRTINDLTKESLALHELVIASGGDPGECFEKVSS LLKKLKDYVLIENPEADTSESEKGMMKHRSPVIPDDFRCPISLELMKDPVIVSTGQTY ERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGVELPKKQGTCSS RKPGSSVSDCDRAAIIALLEKLANGNSEQQRAAAGELRLLAKRNADNRVCIAEAGAIP LLVELLSSTDSRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENA AATLFSLSVVDENKVAIGAAGAIPALIKLLCEGSPRGKKDAATAIFNLSIYQGNKARA VRAGIVPPLMRLLKDAGGGMVDEALAILAILASHQEGKVAIGQAGPIPVLMEVIRTGS PRNRENSAAILWSLCTGDSEQLKIAKDSGAEEALKDLSESGTDRAKRKAGTILELLQR LEVNENPVSLSSL" gene complement(4855760..4865134) /locus_tag="TCM_043266" /note="dbxref CacaoGD:Thecc1EG043266" mRNA complement(join(4855760..4856567,4857565..4857658, 4858071..4858132,4858343..4858400,4859108..4859188, 4860227..4860297,4860414..4860495,4860661..4860783, 4861037..4861143,4861250..4861312,4861672..4861728, 4861841..4861892,4862318..4862412,4863032..4863088, 4863393..4863437,4863551..4863658,4863843..4863908, 4864002..4864112,4864215..4864409,4864673..4864753, 4864920..4864959,4865044..4865098)) /locus_tag="TCM_043266" /product="Sec1/munc18-like (SM) proteins superfamily isoform 1" /inference="alignment:exonerate- protein:2:ricco:30154.m001152" /inference="similar to AA sequence:ricco:30154.m001152" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03564t00001" mRNA complement(join(4855805..4856567,4857565..4857658, 4858071..4858133,4858343..4858400,4859108..4859188, 4860227..4860297,4860414..4860495,4860661..4860783, 4861037..4861143,4861250..4861312,4861672..4861728, 4861841..4861892,4862318..4862412,4863032..4863088, 4863393..4863437,4863551..4863658,4863843..4863908, 4864002..4864112,4864215..4864409,4864673..4864753, 4864920..4864962,4865044..4865134)) /locus_tag="TCM_043266" /product="Sec1/munc18-like (SM) proteins superfamily isoform 2" /inference="alignment:exonerate- protein:2:ricco:30154.m001152" /inference="similar to AA sequence:ricco:30154.m001152" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2864t2; inference alignment:Newbler:10:TSA:cgbaB_g03564t00001" CDS complement(join(4856478..4856567,4857565..4857658, 4858071..4858132,4858343..4858400,4859108..4859188, 4860227..4860297,4860414..4860495,4860661..4860783, 4861037..4861143,4861250..4861312,4861672..4861728, 4861841..4861892,4862318..4862412,4863032..4863088, 4863393..4863437,4863551..4863658,4863843..4863908, 4864002..4864112,4864215..4864409,4864673..4864753, 4864920..4864959,4865044..4865096)) /locus_tag="TCM_043266" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30154.m001152" /codon_start=1 /product="Sec1/munc18-like (SM) proteins superfamily isoform 1" /protein_id="EOY18769.1" /db_xref="TAIR:AT3G54860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLH4" /translation="MAQIPNLDNSPLNLKSLREQSQRDLVKILKDIRGKKCLVIEPKL GGSLSLIIQTSLLKEYGIELRHLSAEPVQTDCTKVVYLVPSQRDLMKFISSHVHNDIS KGLQREYYIYFVPRREIQCEKILEEENVHHLMTIGEYPLYVVPLDEDVLSFELDLAYK ECQVDGDTGSLWQIAKAIHKLESSFGVIPNLRAKGKASVLVADILNRMQTEEPVSSSD MAVPEINTLILIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDSSVMGVQQEGKK MKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEMTTTNQTVSELKDFVKKL NSLPEMTRHINLAQHLSKFTSKPSFLAKLDMEHTIVEASSYDICFEYIEEMIQKQEPL INVLRILILFSVTNSGLPKKHFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQESKSN WLTVKRALQLVVEDTDTANPNDIAYVFSGYAPLSIRLVQHAVRSGWRPMEEILKLLPG PHTETKRGRFASNPSFDTLQSASNGIDKIADGRRSLVLVVFVGGVTFAEISALRFLSA QEGMAYDLIIGTTKIVNGHTLAETFLGTSG" CDS complement(join(4858104..4858133,4858343..4858400, 4859108..4859188,4860227..4860297,4860414..4860495, 4860661..4860783,4861037..4861143,4861250..4861312, 4861672..4861728,4861841..4861892,4862318..4862412, 4863032..4863088,4863393..4863437,4863551..4863658, 4863843..4863908,4864002..4864112,4864215..4864409, 4864673..4864753,4864920..4864962,4865044..4865096)) /locus_tag="TCM_043266" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30154.m001152" /codon_start=1 /product="Sec1/munc18-like (SM) proteins superfamily isoform 2" /protein_id="EOY18770.1" /db_xref="TAIR:AT3G54860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLH4" /translation="MAQIPNLDNSPLNLKSLSREQSQRDLVKILKDIRGKKCLVIEPK LGGSLSLIIQTSLLKEYGIELRHLSAEPVQTDCTKVVYLVPSQRDLMKFISSHVHNDI SKGLQREYYIYFVPRREIQCEKILEEENVHHLMTIGEYPLYVVPLDEDVLSFELDLAY KECQVDGDTGSLWQIAKAIHKLESSFGVIPNLRAKGKASVLVADILNRMQTEEPVSSS DMAVPEINTLILIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDSSVMGVQQEGK KMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEMTTTNQTVSELKDFVKK LNSLPEMTRHINLAQHLSKFTSKPSFLAKLDMEHTIVEASSYDICFEYIEEMIQKQEP LINVLRILILFSVTNSGLPKKHFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQESKS NWLTVKRALQLVVEDTDTANPNDIAYVFSGYAPLSIRLVQHAVRSGWRPMEEILKLLP GPHTETKRGSLCEQSII" mRNA complement(join(<4858372..4858400,4859108..4859188, 4860227..4860297,4860414..4860495,4860661..4860783, 4861037..4861143,4861250..4861312,4861672..4861728, 4861841..4861892,4862318..4862412,4863032..4863088, 4863393..4863437,4863551..4863658,4863843..4863899, 4864002..4864112,4864215..4864409,4864673..4864753, 4864920..4865072)) /locus_tag="TCM_043266" /product="Sec1/munc18-like (SM) proteins superfamily isoform 3" /inference="alignment:exonerate- protein:2:ricco:30154.m001152" /inference="similar to AA sequence:ricco:30154.m001152" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc697t1; inference alignment:Newbler:10:TSA:cgbaB_g03564t00001" misc_feature complement(join(4858372..4858400,4859108..4859887)) /locus_tag="TCM_043266" /note="Gene fragment of Thecc1EG043266t1; dbxref gnl|CacaoGD|Thecc1EG043266t1; quality class is mediumpartial-partof is thecc1eg043266t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc692t5; dbxref CacaoGD:Thecc1EG043267t1" CDS complement(join(<4858373..4858400,4859108..4859188, 4860227..4860297,4860414..4860495,4860661..4860783, 4861037..4861143,4861250..4861312,4861672..4861728, 4861841..4861892,4862318..4862412,4863032..4863088, 4863393..4863437,4863551..4863658,4863843..4863899, 4864002..4864112,4864215..4864316)) /locus_tag="TCM_043266" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30154.m001152" /codon_start=1 /product="Sec1/munc18-like (SM) proteins superfamily isoform 3" /protein_id="EOY18771.1" /db_xref="TAIR:AT3G54860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLH4" /translation="MKFISSHVHNDISKGLQREYYIYFVPRREIQCEKILEEENVHHL MTIGEYPLYVVPLDEDVLSFELDLAYKVDGDTGSLWQIAKAIHKLESSFGVIPNLRAK GKASVLVADILNRMQTEEPVSSSDMAVPEINTLILIDREVDMVTPMCSQLTYEGLVDE FLRINNGSVELDSSVMGVQQEGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSM KQDYTEMTTTNQTVSELKDFVKKLNSLPEMTRHINLAQHLSKFTSKPSFLAKLDMEHT IVEASSYDICFEYIEEMIQKQEPLINVLRILILFSVTNSGLPKKHFDYLRRELLHSYG FEHMATLNNLEKAGLFKKQESKSNWLTVKRALQLVVEDTDTANPNDIAYVFSGYAPLS IRLVQHAVRSGWRPMEEILKL" mobile_element complement(4865628..4865834) /note="source:CACAO_PIF_E119_scaffold_3 4429 4668" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4866172..4866352 /note="source:CACAO_PIF_E119_scaffold_3 4482 4671" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 4867593..4874515 /locus_tag="TCM_043268" /note="dbxref CacaoGD:Thecc1EG043268" mRNA join(4867593..4867970,4868863..4869336,4869991..4870322, 4870496..4870656,4870985..4871243,4872323..4872621, 4872716..4873254,4874232..4874515) /locus_tag="TCM_043268" /product="FAD-dependent oxidoreductase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016222001" /inference="similar to AA sequence:Phytozome:GSVIVT01016222001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2947t3" CDS join(4867601..4867970,4868863..4869336,4869991..4870322, 4870496..4870656,4870985..4871243,4872323..4872621, 4872716) /locus_tag="TCM_043268" /codon_start=1 /product="FAD-dependent oxidoreductase family protein" /protein_id="EOY18772.1" /db_xref="Phytozome:GSVIVT01016222001" /db_xref="TAIR:AT3G10370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUJ0" /translation="MSATATRLRRLAASTAAVAVTAAGGAILFTPISVNDRAGGSSLE SVRRKINDPSAVVPSRTVQESALIGASATKPLDILVVGGGATGCGVALDAATRGLRVG LVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKHFIENASHL CHALPCMTPCFDWFEVVYYWMGLKLYDLVAGPRLLHLSRYYSAQESVELFPTLARKGK DKSLRGTVVYYDGQMNDSRLNVGLACTAALAGAAVLNHAEVVSFLKDEATKRIIGARI RDNLSGHEFETYAKVVVNAAGPFCDSVRKMADKDAQPMISPSSGVHIVLPDYYSPEGM GLIVPKTKDGRVVFMLPWLGRTVAGTTDSNTSITPLPEPHEDEIQFILDAICDYLNVK VRRTDVLSAWSGIRPLAVDPKAKNTESISRDHVVSEDYPGLVTITGGKWTTYRSMAED AVNEAIKSGKLSPSNECITRNLRLTGGDGWEPSFFTVLSQQYVRMKKSYGGKVVPGVM DTAAAKHLSHAYGTLAERVATIAQNETLGKRLAHGYPYLEAEVAYCARNEYCESAVDF IARRSRLAFLDTDAAGRALPRIIQILATEHNWGKSRQKQEMQKAKEFLETFKSSKNAQ FHDGKHE" gene 4874528..4879800 /locus_tag="TCM_043269" /note="dbxref CacaoGD:Thecc1EG043269" mRNA join(4874528..4875218,4875859..4875942,4876268..4876382, 4876479..4876551,4876735..4876828,4876917..4876965, 4877536..4877686,4877971..4878027,4878327..4878382, 4879165..4879757) /locus_tag="TCM_043269" /product="Pseudouridine synthase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03540.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03540.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8025t5" mRNA join(4874563..4875218,4875859..4875938,4876282..4876382, 4876479..4876551,4876735..4876828,4876917..4876965, 4879164..4879800) /locus_tag="TCM_043269" /product="Pseudouridine synthase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03540.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03540.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc445t8; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8025t5; inference alignment:Newbler:10:TSA:cgbaL_g01369t00001" mRNA join(4874563..4875218,4875859..4875938,4876282..4876382, 4876479..4876551,4876735..4876828,4876917..4876965, 4877536..4877635,4879164..4879799) /locus_tag="TCM_043269" /product="Pseudouridine synthase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03540.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03540.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc446t3_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8025t5; inference alignment:Newbler:10:TSA:cgbaL_g01369t00001" CDS join(4874597..4875218,4875859..4875942,4876268..4876382, 4876479..4876551,4876735..4876828,4876917..4876965, 4877536..4877686,4877971..4878027,4878327..4878382, 4879165..4879225) /locus_tag="TCM_043269" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pseudouridine synthase family protein isoform 1" /protein_id="EOY18773.1" /db_xref="Phytozome:POPTR_0008s03540.1" /db_xref="TAIR:AT2G39140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLH3" /translation="MKCNNFEGGNPPKYPQDLKSSAYWPASEQSKARKMGALSSLHHL STSLSLLTRPSLSLPPFLRPIRALPPITSSSSLQFNITFAPPNPKLKPRTPPNLKNDV VLDDSESPPLPSNGQLFIPWIVRGEDGNLKLQAHPPARLIHALADAKTQKPKKKVDKA VKKKKEISAVGNASVEPPKLSKAARRFYNENFTEPPQRLSKVLAAAGVASRRGSEELI FDGKVTVNGSVCNAPQASDNLQTRVDPAKDIIYVNGSRLPKKLPPKIYLALNKPKGYI CSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKPRLFTVGRLDVATTGLIIVTNDGDFAQ KLSHPSSNLNKEYIATIDGEVKKRHLIAISEGTEIEGIHCIPDSVELLPRQPDLSRPR LRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPADLGLGKHVELKQSDLRAMG WKS" CDS join(4874597..4875218,4875859..4875938,4876282..4876382, 4876479..4876551,4876735..4876828,4876917..4876965, 4879164..4879197) /locus_tag="TCM_043269" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Pseudouridine synthase family protein isoform 4" /protein_id="EOY18776.1" /db_xref="Phytozome:POPTR_0008s03540.1" /db_xref="TAIR:AT2G39140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLH3" /translation="MKCNNFEGGNPPKYPQDLKSSAYWPASEQSKARKMGALSSLHHL STSLSLLTRPSLSLPPFLRPIRALPPITSSSSLQFNITFAPPNPKLKPRTPPNLKNDV VLDDSESPPLPSNGQLFIPWIVRGEDGNLKLQAHPPARLIHALADAKTQKPKKKVDKA VKKKKEISAVGNASVEPPKLSKAARRFYNENFTEPPQRLSKVLAAAGVASRRGSEELI FDGKVTVNGSVCNAPQTRVDPAKDIIYVNGSRLPKKLPPKIYLALNKPKGYICSSGEK EFKSVLDLFEDYLKRWDKMNRGSPKPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPS SNLNKEAREACRAKTE" CDS join(4874597..4875218,4875859..4875938,4876282..4876382, 4876479..4876551,4876735..4876828,4876917..4876965, 4877536..4877635,4879164..4879169) /locus_tag="TCM_043269" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pseudouridine synthase family protein isoform 3" /protein_id="EOY18775.1" /db_xref="Phytozome:POPTR_0008s03540.1" /db_xref="TAIR:AT2G39140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLH3" /translation="MKCNNFEGGNPPKYPQDLKSSAYWPASEQSKARKMGALSSLHHL STSLSLLTRPSLSLPPFLRPIRALPPITSSSSLQFNITFAPPNPKLKPRTPPNLKNDV VLDDSESPPLPSNGQLFIPWIVRGEDGNLKLQAHPPARLIHALADAKTQKPKKKVDKA VKKKKEISAVGNASVEPPKLSKAARRFYNENFTEPPQRLSKVLAAAGVASRRGSEELI FDGKVTVNGSVCNAPQTRVDPAKDIIYVNGSRLPKKLPPKIYLALNKPKGYICSSGEK EFKSVLDLFEDYLKRWDKMNRGSPKPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPS SNLNKEYIATIDGEVKKRHLIAISEGTEIEGIHCIPDSVG" mRNA join(<4874744..4875218,4875859..4875938,4876282..4876382, 4876479..4876551,4876735..4876828,4876917..4876965, 4877536..4877686,4877971..4878027,4878327..4878382, 4879165..4879228) /locus_tag="TCM_043269" /product="Pseudouridine synthase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03540.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03540.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01369t00001; inference alignment:Newbler:10:TSA:cgbaL_g01369t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8025t5" CDS join(<4874744..4875218,4875859..4875938,4876282..4876382, 4876479..4876551,4876735..4876828,4876917..4876965, 4877536..4877686,4877971..4878027,4878327..4878382, 4879165..4879225) /locus_tag="TCM_043269" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pseudouridine synthase family protein isoform 2" /protein_id="EOY18774.1" /db_xref="Phytozome:POPTR_0008s03540.1" /db_xref="TAIR:AT2G39140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLH3" /translation="LLTRPSLSLPPFLRPIRALPPITSSSSLQFNITFAPPNPKLKPR TPPNLKNDVVLDDSESPPLPSNGQLFIPWIVRGEDGNLKLQAHPPARLIHALADAKTQ KPKKKVDKAVKKKKEISAVGNASVEPPKLSKAARRFYNENFTEPPQRLSKVLAAAGVA SRRGSEELIFDGKVTVNGSVCNAPQTRVDPAKDIIYVNGSRLPKKLPPKIYLALNKPK GYICSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKPRLFTVGRLDVATTGLIIVTNDGD FAQKLSHPSSNLNKEYIATIDGEVKKRHLIAISEGTEIEGIHCIPDSVELLPRQPDLS RPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPADLGLGKHVELKQSDLR AMGWKS" gene 4879805..4893620 /locus_tag="TCM_043270" /note="dbxref CacaoGD:Thecc1EG043270" mRNA join(4879805..4879858,4881180..4881661,4882734..4882782, 4883016..4883088,4883173..4883247,4883361..4883410, 4883515..4883575,4883650..4884057,4884528..4884704, 4884811..4885041,4885203..4885316,4885413..4886651, 4887265..4889007,4889689..4890264,4890379..4890856, 4893595..4893620) /locus_tag="TCM_043270" /product="RNA helicase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g02730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004727t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s20250.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc232t8" CDS join(4881448..4881661,4882734..4882782,4883016..4883088, 4883173..4883247,4883361..4883410,4883515..4883575, 4883650..4884057,4884528..4884704,4884811..4885041, 4885203..4885316,4885413..4886651,4887265..4888743) /locus_tag="TCM_043270" /note="paralog of Thecc1EG004727t1" /codon_start=1 /product="RNA helicase family protein" /protein_id="EOY18777.1" /db_xref="Phytozome:POPTR_0002s20250.1" /db_xref="TAIR:AT1G33390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GSD6" /translation="MLKPKSRTRSFKLAALTSSLYERERQRKREGEMVSRNLKLQKRL SASVLKCGKGKVRLDPDEVNEISMANSRLSELPVELMTRQDSWSLEGNDSNALMLSTK RSKKRKGNNQELEKAKEKQHPKLSKSQIRKLKKLEEEKEKALLLSKSIKTLEKYKISE DAYSLLQSSKTIGLAETMREKRRRVVQFSKAGLEPPYVDKSSKGRGGNNSSSSSEPEP EPELEEINSRKLSTDGQPLIIEREVARNELGRLASSQEPVFGKDLDPSCSSVDTLPTK EVSLKENSTPLEEDIKNCIAKLSTDGGRESSMSKGLLSAPTVVHVSRPDEVENKRKDL PIVMMEQEIMEAINENSTVIICGETGCGKTTQVPQFLYEAGFGSSQSTLRSGIIGVTQ PRRVAVLATAKRVAFELGLRLGKEVGFQVRHDKKIGDRCSIKFMTDGILLREVQNDVL LKRYSAIILDEAHERSLNTDILIGMLSRVIRLRQDLYEKQQRMMLSGQSVSPENLILP LNLVLMSATLRVEDFISGRKLFHVPPPVIEVPTRQYPVTVHFSKRTELVDYIGQAFKK VMSIHKRLPQGGILVFVTGQREVEYLCQKLRKASRDVIASISEGDKSTDTSAPSQIDL VEGINMKDISEAFEIHGDSTHQQTDRFSSYDEDQYDYEEDDSDASYDSEMESELEIFG EERNTLEQKSMDNVDNLVDAFGGNGSLASLKAAFDALAGKNGLDANPEGGETVSINPE NSLEQPPAPIEKIREGNRSLNAGILRVLPLYAMLPAAAQLRVFEEVKDGERLVVVATN VAETSLTIPGIKYVVDTGREKVKNYNPTNGMETYEVLWISKASAAQRAGRAGRTGPGH CYRLYSSAVFNNIFPDFSCAEISKIPVDGVVLLMKSMGIDKVANFPFPTSPGPTALVE ADRCLKALEALDRNGRLTSLGKAMAHYPMSPRHSRMLLTVIQIMRRVKSYARANLVLA YAVAAAAVLSLTNPFVMEYEGSYSQTDESKQNDGTGPLDGEKVLKKKEKSQKKKLREM ARMSHAKFSNPSSDTLTVAYALQCFELSKSQVEFCIENRLHLKTMEEMSKLRKQLLQL VFNQNVHHDVEQDFLWTHGTMEDIEHSWRISSSKNPLLLNEEELLGQAICAGWADRVA KRIRGVSRSSEGDRKVNTARYQACLVKETVFLHRSSSLSNSAPEFLVYSELLHTKRPY MHGVTSVKSDWLVNYAKSYCTFSAPLADPKPYYDPQTDEVYCWVVPTFGPHLWQLPLH SLRISNDAHRVTVFAFALLEGQVLPCLRSVKQFMSASPDIILKPESYGQRRVGNLLHK LKARSINSCAQLRQTWEENSRELHLEILDWFQESFHKQFAKLWSEMLSEVLLEPQERF PKRVKRDKRKK" gene 4896085..4929032 /locus_tag="TCM_043271" /note="dbxref CacaoGD:Thecc1EG043271" mRNA join(4896085..4896498,4897285..4897385,4897606..4897728, 4898005..4898190,4899324..4899545,4899701..4899845, 4900110..4900259,4900624..4900712,4901617..4901829, 4902027..4902161,4903203..4903382,4903512..4903691, 4904869..4904988,4905177..4905305,4905380..4905515, 4905612..4905704,4905939..4906064,4906946..4907071, 4907468..4907611,4907696..4907824,4908454..4909056, 4911726..4912318,4928772..4929032) /locus_tag="TCM_043271" /product="Armadillo/beta-catenin repeat family protein / kinesin motor family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23370.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23370.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2879t3" CDS join(4896270..4896498,4897285..4897385,4897606..4897728, 4898005..4898190,4899324..4899545,4899701..4899845, 4900110..4900259,4900624..4900712,4901617..4901829, 4902027..4902161,4903203..4903382,4903512..4903691, 4904869..4904988,4905177..4905305,4905380..4905515, 4905612..4905704,4905939..4906064,4906946..4907071, 4907468..4907611,4907696..4907824,4908454..4908608) /locus_tag="TCM_043271" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Armadillo/beta-catenin repeat family protein / kinesin motor family protein isoform 1" /protein_id="EOY18778.1" /db_xref="Phytozome:POPTR_0010s23370.1" /db_xref="TAIR:AT3G54870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUJ2" /translation="MATTSSGLRPAQRAERQRSTQQPQGLSHAGNLLTRSLNNGQQSL LRSKEAKPPSASSRRSVTPTSRSHSRDFEDDNDPGRVRVAVRLRPRNAEDLLSDADFA DCVELQPELKRLKLRKNNWSSESYKFDEVLTETASQKRVYEVVAKPVVESVLGGYNGT VMAYGQTGTGKTFTLGRLGKDDASERGIMVRALEDIMANITIASDTVEVSYLQLYMES IQDLLAPEKTNIPINEDPKTGEVSLPGAVTVKVRDLDHFLELLQIGEANRHAANTKLN TESSRSHAILMVYIRRSVPEKVEVDISSQEKKTKSNLPVVRKSKLLIVDLAGSERLDK SGSEGLLLEEAKFINLSLTSLGKCINALAENCPHIPTRDSKLTRLLRDSFGGSARTSL IITIGPSSRHHAETTSTIMFGQRAMKIVNMVKLKEEFDYESLCRKLETQVDHLTAEID RQHKLRERDKYDLEKQLRECQDSFYETRKNLVTRSEFLEKENARLELDMEDILAQLNC QKDHNSLMQDKVAELEINLEQSKQHQLENSTYQKVLADTTQIYENKIAELIKQLEVER AQSESAEEQFDAMKKLSGDHQKLIKQHEMENSNYLKALADTTQMYEKKIRELTKQVED EHTRFEGVQDQLDLANKLLRDYQNSMQEQEEISELRLKLQEMYQLHESTVNELQALKA EFKDQIQEKETISEELYVVREKLSAEEKRRKTIEHELVKLKKSAPEGDKDFEDKRSYM KENIRGVSVFGTSASLNKSGPLRETQSAQRATIAKICEEVGLQKIIQLLTSEESDVQI HAVKVIANLAAEDINQEKIVEEGGLDALLTMLKSSQNATILRVASGAIANLAMNELNQ GLIMSRGGAQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHSMLKEDGGIKALLGMV RSGNSDVVAQVARGMANFAKCESRAIIQGHRKGRSLLMEDGGLEWLIANCNTASASTR RHVELALCHLAQNEDNAKDFTSSGGLQELQRISMESSRDDIRDLAKKMLKSNTMFQGD TRSGWQ" mRNA join(<4896303..4896498,4897285..4897385,4897606..4897728, 4898005..4898190,4899324..4899545,4899701..4899845, 4900110..4900259,4900624..4900712,4901617..4901829, 4902027..4902161,4903203..4903382,4903566..4903691, 4904869..4904988,4905177..4905305,4905378..4905515, 4905610..4905704,4905939..4906064,4906946..4907071, 4907468..4907611,4907696..4907824,4908454..4909070) /locus_tag="TCM_043271" /product="Armadillo/beta-catenin repeat family protein / kinesin motor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005491t4" /inference="similar to AA sequence:Phytozome:POPTR_0010s23370.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2879t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc667t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2879t3" CDS join(<4896303..4896498,4897285..4897385,4897606..4897728, 4898005..4898190,4899324..4899545,4899701..4899845, 4900110..4900259,4900624..4900712,4901617..4901829, 4902027..4902161,4903203..4903382,4903566..4903691, 4904869..4904988,4905177..4905305,4905378..4905398) /locus_tag="TCM_043271" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005491t4" /codon_start=1 /product="Armadillo/beta-catenin repeat family protein / kinesin motor family protein isoform 2" /protein_id="EOY18779.1" /db_xref="Phytozome:POPTR_0010s23370.1" /db_xref="TAIR:AT3G54870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUJ2" /translation="QRAERQRSTQQPQGLSHAGNLLTRSLNNGQQSLLRSKEAKPPSA SSRRSVTPTSRSHSRDFEDDNDPGRVRVAVRLRPRNAEDLLSDADFADCVELQPELKR LKLRKNNWSSESYKFDEVLTETASQKRVYEVVAKPVVESVLGGYNGTVMAYGQTGTGK TFTLGRLGKDDASERGIMVRALEDIMANITIASDTVEVSYLQLYMESIQDLLAPEKTN IPINEDPKTGEVSLPGAVTVKVRDLDHFLELLQIGEANRHAANTKLNTESSRSHAILM VYIRRSVPEKVEVDISSQEKKTKSNLPVVRKSKLLIVDLAGSERLDKSGSEGLLLEEA KFINLSLTSLGKCINALAENCPHIPTRDSKLTRLLRDSFGGSARTSLIITIGPSSRHH AETTSTIMFGQRAMKIVNMVKLKEEFDYESLCRKLETQVDHLTAEIDRQHKLRERDKY DLEKQLRECQDSFYETRKNLVTRSEFLEKENARLELDMEDILAQLNCQKDHNSLMQDK VAELEINLEQSKQHQLENSTYQKVLADTTQIYENKIAELIKQLEVERAQSESAEEQFD AMKKLSGDHQKLIKMYEKKIRELTKQVEDEHTRFEGVQDQLDLANKLLRDYQNSMQEQ EEISELRLKLQEMYQLHESTVNELQALKAEFKDQIQEKETISEELYVVREKLSAEEKR RKTIEHELVKLKKSAPEGDKDFERIKDHI" mobile_element 4910890..4911816 /note="source:INTACT599_F268_scaffold_9-int 1 910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4912503..4912711) /note="source:CACAO_on_E681_scaffold_9 4857 5061" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4912712..4913420) /note="source:CACAO_M_E10599_F78_scaffold_2 2131 2841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4913421..4916134) /note="source:CACAO_M_E85218_F73_scaffold_10 1 2714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4916208..4918245 /note="source:INTACT73_F14_scaffold_4-int 9560 11585" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4918241..4918450) /note="source:CACAO_on_E681_scaffold_9 4645 4865" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4918290..4918759 /note="source:CACAO_PIF_E38_scaffold_2 175 653" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4918461..4923176) /note="source:CACAO_on_E681_scaffold_9 45 4699" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4923544..4923681) /note="source:CACAO_M_E44143_F323_scaffold_5 3119 3260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4923564..4924005 /note="source:INTACT33_F7_scaffold_5-int 9543 9983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4925156..4925198 /note="source:CACAO_M_E34409_F73_scaffold_5 2275 2317" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4929598..4931008) /locus_tag="TCM_043275" /note="dbxref CacaoGD:Thecc1EG043275" mRNA complement(join(4929598..4930585,4930871..4931008)) /locus_tag="TCM_043275" /product="Dehydration-responsive element-binding protein 2C" /inference="alignment:exonerate-protein:2:frave:gene01985" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043302t1" /inference="similar to AA sequence:ricco:29729.m002292" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2858t1" CDS complement(4929686..4930432) /locus_tag="TCM_043275" /note="dbxref ricco:29729.m002292; paralog of Thecc1EG043302t1" /codon_start=1 /product="Dehydration-responsive element-binding protein 2C" /protein_id="EOY18780.1" /db_xref="TAIR:AT2G40340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S475" /translation="MVFVGDQNPKVGSTLSMDSSRKRKRRNGLSVADTLKLWSQNEEA KHPRKAPAKGSKKGCMRGKGGPQNQSCNYRGVRQRTWGKWVAEIRAPNRGKRLWLGTF PTAYEAALAYDEAARMMYGENAILNMPYVSDSDSVATTSNAFSEADFMTVWPKSEICG YHAFGEGERMNVEFPVDSEAPSTSGVINTTDEFQPAKPEEECMKETDYSWLNGLDFSE DIPIIGAPGVWDVGSYFSEDEVFNIDEILG" gene complement(4934856..4943153) /locus_tag="TCM_043276" /note="dbxref CacaoGD:Thecc1EG043276" mRNA complement(join(4934856..4938088,4938321..4938502, 4941829..4942292,4942593..4943153)) /locus_tag="TCM_043276" /product="Disease resistance protein (TIR-NBS class)" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029435001" /inference="similar to AA sequence:ricco:30190.m011239" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1606t2" CDS complement(4935029..4938019) /locus_tag="TCM_043276" /note="dbxref ricco:30190.m011239" /codon_start=1 /product="Disease resistance protein (TIR-NBS class)" /protein_id="EOY18781.1" /db_xref="TAIR:AT4G23440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GYH0" /translation="MDLREDSGRLGSLPATTSRNMSSSSSAFFSANQSPFFSPRSSTC QLSESTRSDAQCDSINCSADPPSSSSGIRDPECLEDVRFGLPDMSLTPAACISSDFQK FDHVLSTTLVSNGTISSYGHVGDSVYSALVEKHRKHVRSQDMSFSPVPMSLSSNRHRS YDVFIGLHGRKPSLLRFANWLRAELEVQGMSCFVSDRARFRNTRKHGLIERAMDVSSF GVVILTRKSFRNPYTIEELRFFSSKKNLVPIYFDLNPADCLVRDIVEKRGELWEKHGG ELWVLYGGLEKEWKEAVNGLFRVDEWKLEAQDGSWRDCILRAVTLLAMKLGRRSVVER LAKWREKVDKEEFPFPRNENFIGRKKELSELEFILFGDISGESERDYFELKARSKRKN LTIGWSKGSSVEERCRERQWESGSRKGKEPVIWKESEKEIEMQSTERQHYQRPRGGGR NSRRKRSAKIVYGKGIACITGDSGIGKTELLLEFAYRYHQRYKMVLWIGGESRYIRQN YLNLWSFLEVDVGVENCIEKCRMKSFEEQEEAAIARVRKELMRNIPFLVVIDNLESEK DWWDRKLVMDLLPRFGGETHILISTRLPRMMNLEPLKLSYLSGVEAMSLMQGSVKDYP IAEIDVLRVIEEKVGRLTVGLAIVGAILSELPINPSRLLDTINRMPLRDFSWSGREAH SLRKNSFLLQLFEVCFSIFDHADGPRSLATRMVQVCGWFAPAAVPVSLLALAAHKVPE KHKGAHFWRKLLRSLTCGFSSSYSKRSEAEASSMLLRFNIARSSTKQGYVHFNELIKV YSRKRGVTGVAHTMVQAVISRGSLFDHPEHIWAACFLLFGFGNDPTVVELKVSELLYL VKEVVLPLAIRTFITFSRCSAALELLRLCTNALEAADQAFVTPVEKWLDKSLCWRPIQ TNAQLNPCLWQELALSRATVLETRSKLMLRGGQFDIGDDLIRKAIFIRTSIFGEDHPD TISARETLSKLTRLLANVQTHTSP" gene 4938446..4939443 /locus_tag="TCM_043277" /note="dbxref CacaoGD:Thecc1EG043277" mRNA 4938446..4939443 /locus_tag="TCM_043277" /product="Uncharacterized protein" /note="quality class is weak, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc21627t1" CDS 4938470..4938802 /locus_tag="TCM_043277" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18782.1" /translation="MSMSIVFSSFCLTEAEAPLKKRKKRGTQKDGSDEVWVGRLHCGT ASCPFIAVKKKKGLLFSFLADKTKSTVFSAFGFTFEHGFLFLSLFLWVVTGGVGFLPL LLFKVSKN" mobile_element complement(4943745..4943826) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3183 3246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4943753..4943818 /note="source:scaffold_1_CACTA_0011 7453 7518" /mobile_element_type="transposon:TIR/CACTA" gene complement(4944003..4964032) /locus_tag="TCM_043278" /note="dbxref CacaoGD:Thecc1EG043278" mRNA complement(join(4944003..4945034,4945120..4945169, 4945259..4945354,4946394..4946468,4946589..4946690, 4947212..4947289,4947407..4947590,4948188..4948273, 4948498..4948695,4949607..4949714,4950004..4950116, 4950771..4950871,4951604..4951653,4951759..4951889, 4952745..4952815,4954624..4954739,4954901..4955058, 4955161..4955468,4955830..4955936,4956028..4956193, 4956906..4957085,4957567..4957676,4959473..4959577, 4959743..4959916,4962369..4962581,4963225..4963352, 4963880..4964032)) /locus_tag="TCM_043278" /product="Subunit of exocyst complex 8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03520.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016219001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3015t5" mRNA complement(join(4944421..4945034,4945120..4945169, 4945259..4945354,4946394..4946468,4946589..4946690, 4947212..4947289,4947407..4947590,4948188..4948273, 4948498..4948695,4949607..4949714,4950004..4950116, 4950771..4950871,4951604..4951653,4951759..4951889, 4952745..4952815,4954624..4954739,4954901..4955058, 4955161..4955468,4955830..4955936,4956028..4956193, 4956906..4957085,4957567..4957676,4957807..4958007)) /locus_tag="TCM_043278" /product="Subunit of exocyst complex 8 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03520.1" /inference="alignment:exonerate- protein:2:ricco:30183.m001302" /inference="similar to AA sequence:Phytozome:GSVIVT01016219001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc547t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3015t5" CDS complement(join(4944947..4945034,4945120..4945169, 4945259..4945354,4946394..4946468,4946589..4946690, 4947212..4947289,4947407..4947590,4948188..4948273, 4948498..4948695,4949607..4949714,4950004..4950116, 4950771..4950871,4951604..4951653,4951759..4951889, 4952745..4952815,4954624..4954739,4954901..4955058, 4955161..4955468,4955830..4955936,4956028..4956193, 4956906..4957085,4957567..4957676,4959473..4959577, 4959743..4959916,4962369..4962581,4963225..4963266)) /locus_tag="TCM_043278" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Subunit of exocyst complex 8 isoform 1" /protein_id="EOY18783.1" /db_xref="Phytozome:GSVIVT01016219001" /db_xref="TAIR:AT3G10380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLH1" /translation="MGILDGFPIPPDKEYLRDELSRIDESWAAARFDSLPHVVRILTS KDRDGEVQILKDQSDVVEDVVDEVVHAYHSGFNKAIQNYSQILRLFSESTESIGVLKV DLAEAKKRLGARNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLISEKQFYAA AQLHVQSSLMLEREGLQMVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNKGEYSSVA SSMNGKDDEVPTTTAVAFTANTSQPVSRRTRSVKGDSQFGSQGLVDGPYRPGSIDEGS SYDGHDEDGSLEPHDDNTLDGHAVRLNGGDGKDVKVISRQIPLWLLNSTPDEFVETIK KSDAPLHVKYLRTMVECLCLLHKVAAAGAVISQRLRPTIHEIITTKIKAHAESINSSR SGIDKATRTGTTSLLFMKGQLERYQLPKQKRQNGMSLAGTLLAVSPVSPVMAPTGKAQ AATKELLDSILDAVVRIFENHVVVGELIESKSSLQGDLNTPKSLSTDVNLDSEASQIT GGYSIGFSLTVLQSECQQLICEILRATPEAASADAAVQTARLASKVPTNEKRDASEDG LTFAFRFTDATVSVPNQGVDLIRQGWSRRGPNVLQEGYGSAAVLPEQGIYLAASVYRP VLEFTDRVASMLPRKYSQLGNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAF RPRAHTSVSYALSIEKGRPILQGLLAIDFLAKELLGWAQAMPKFSADLVKYVQTFLER TYERCRTSYMEAVLEKQSYMLIGRYDIEKLMRLDPASACLPNALGQSNVRNIASDAES IEVESELSELLLNLRPIKQENLIRDDNKLVLLASLSDSLEYLADSIERLVQATPQTSN HVESGKPSHTRTSSSPARDLASFADEYRKLAIDCLKVLRVEMQLETIFHMQEMTNREY LENQDAEEPDDFVISLTAQITRRDEEMAPFVAGVKRNYIFGGICSIATNASIKALADM ESINLFGVQQICRNSIALEQALAAIPSIDSEAVRQRLDHVRTYYELLNMPFEALLAFI TEHEHLFTAAEYANLLKVQVPGREIPPDAQDRVSEILSL" CDS complement(join(4944947..4945034,4945120..4945169, 4945259..4945354,4946394..4946468,4946589..4946690, 4947212..4947289,4947407..4947590,4948188..4948273, 4948498..4948695,4949607..4949714,4950004..4950116, 4950771..4950871,4951604..4951653,4951759..4951889, 4952745..4952815,4954624..4954739,4954901..4955058, 4955161..4955468,4955830..4955936,4956028..4956193, 4956906..4957085,4957567..4957676,4957807..4957851)) /locus_tag="TCM_043278" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Subunit of exocyst complex 8 isoform 2" /protein_id="EOY18784.1" /db_xref="Phytozome:GSVIVT01016219001" /db_xref="TAIR:AT3G10380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLH1" /translation="MLNTFLVGANLHLLQVGALQDVRSELTKLRGVLFYKVLEDLHAH LYNKGEYSSVASSMNGKDDEVPTTTAVAFTANTSQPVSRRTRSVKGDSQFGSQGLVDG PYRPGSIDEGSSYDGHDEDGSLEPHDDNTLDGHAVRLNGGDGKDVKVISRQIPLWLLN STPDEFVETIKKSDAPLHVKYLRTMVECLCLLHKVAAAGAVISQRLRPTIHEIITTKI KAHAESINSSRSGIDKATRTGTTSLLFMKGQLERYQLPKQKRQNGMSLAGTLLAVSPV SPVMAPTGKAQAATKELLDSILDAVVRIFENHVVVGELIESKSSLQGDLNTPKSLSTD VNLDSEASQITGGYSIGFSLTVLQSECQQLICEILRATPEAASADAAVQTARLASKVP TNEKRDASEDGLTFAFRFTDATVSVPNQGVDLIRQGWSRRGPNVLQEGYGSAAVLPEQ GIYLAASVYRPVLEFTDRVASMLPRKYSQLGNDGLLAFVENFVKDHLLPTMFVDYRKG VQQAISSPAAFRPRAHTSVSYALSIEKGRPILQGLLAIDFLAKELLGWAQAMPKFSAD LVKYVQTFLERTYERCRTSYMEAVLEKQSYMLIGRYDIEKLMRLDPASACLPNALGQS NVRNIASDAESIEVESELSELLLNLRPIKQENLIRDDNKLVLLASLSDSLEYLADSIE RLVQATPQTSNHVESGKPSHTRTSSSPARDLASFADEYRKLAIDCLKVLRVEMQLETI FHMQEMTNREYLENQDAEEPDDFVISLTAQITRRDEEMAPFVAGVKRNYIFGGICSIA TNASIKALADMESINLFGVQQICRNSIALEQALAAIPSIDSEAVRQRLDHVRTYYELL NMPFEALLAFITEHEHLFTAAEYANLLKVQVPGREIPPDAQDRVSEILSL" mobile_element complement(4965502..4965888) /note="source:CACAO_MITE_S87_scaffold_3 20 416" /mobile_element_type="transposon:TIR/MITE" gene 4970038..4975022 /locus_tag="TCM_043281" /note="dbxref CacaoGD:Thecc1EG043281" mRNA join(4970038..4971226,4971318..4971858,4972431..4973192, 4973290..4973335,4973446..4973570,4973995..4975022) /locus_tag="TCM_043281" /product="Flavin containing amine oxidoreductase family protein" /inference="alignment:exonerate- protein:2:TAIR:AT3G10390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034356t1" /inference="similar to AA sequence:frave:gene23463" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2923t3" CDS join(4970090..4971226,4971318..4971858,4972431..4973192, 4973290..4973335,4973446..4973570,4973995..4974026) /locus_tag="TCM_043281" /note="dbxref frave:gene23463; paralog of Thecc1EG034356t1" /codon_start=1 /product="Flavin containing amine oxidoreductase family protein" /protein_id="EOY18785.1" /db_xref="TAIR:AT3G10390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAE3" /translation="MNPPNQTPDQFSQFPLPHFTLLPPLPNPTPNRNFHPIPTPTPIP IPNSNPNATPHLTDHLLSFPVPKKRRRGRPQRSASTSSFHVLSFPNGSFNPNLPNSNP NHNSIPSSSTATTQVTPPKIADEIIVINKESTTEALTALSAGFPADSLTEEEIDFGVV SSVGGIEQVNYILIRNHIIAKWRENISNWVTKEMFVDSIPKHCSPLLDSAYNYLVTHG YINFGVAPAIKEKIPAEPSKSNVVIIGAGLAGLAAARQLMRFGFKVTVLEGRKRAGGR VYTKKMEGGNRVSAAADLGGSVLTGTLGNPLGIVAKQLGASLFKVRDKCPLYRMDGRP VDPDMDMKVETAFNRLLDKASRLRQLMGDVAMDVSLGAALETFRQLSLAFWDQDDPYD MGGDHCFLPGGNGRLVQALAENVPILYEKTVHTIRYGSDGVQVMAGSQVYEGDMALCT VPLGVLKSGSIKFIPELPQRKLDGIKRLGFGLLNKVGMLFPYVFWGTDLDTFGHLTED PNRRGEFFLFYSYATVAGGPLLLALVAGEAAHRFETMPPTDAVTQVLQILKGIYEPQG ITVPEPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRR YPATMHGAFLTGLREAANMAQYAKTRTGKKKIYRSPSNNAHSCASLLMDLFREPDLEF GSFSVIFGRKNADPKSPAILRVTFSEPRKKNQEGSKTDQQHSNKVLFQQLQSHFNQQQ QLHVYTLLSRQQALELREVRGGDEMRLNYLCEKLGVKLVGRKGLGPTADSVIASIKAQ RGVRKPSSTPLALKSGMSKLKTGTLKQKFIRRAKIVRNTKGLIPPPILNAVNGSVSEE IKVIKQAPPDISTSGQNLGETLKQ" gene complement(4975495..4977813) /locus_tag="TCM_043282" /note="dbxref CacaoGD:Thecc1EG043282" mRNA complement(join(4975495..4976491,4977600..4977757)) /locus_tag="TCM_043282" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23462" /inference="similar to AA sequence:Phytozome:POPTR_0010s23410.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9792t1; alternateUTRof:Thecc1EG043282t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2877t1" mRNA complement(join(4975495..4976350,4976429..4976519, 4977064..4977089)) /locus_tag="TCM_043282" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene23462" /inference="similar to AA sequence:Phytozome:POPTR_0010s23410.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1355t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2877t1" mRNA complement(join(4975499..4976519,4977600..4977813)) /locus_tag="TCM_043282" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23462" /inference="similar to AA sequence:Phytozome:POPTR_0010s23410.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2877t2; alternateUTRof:Thecc1EG043282t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2877t1" mRNA complement(join(4975499..4976519,4977064..4977226, 4977600..4977688)) /locus_tag="TCM_043282" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23462" /inference="similar to AA sequence:Phytozome:POPTR_0010s23410.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2877t1" CDS complement(join(4975670..4976350,4976429..4976491)) /locus_tag="TCM_043282" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY18788.1" /db_xref="Phytozome:POPTR_0010s23410.1" /db_xref="TAIR:AT2G39170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUJ6" /translation="MNGFSTVDGFVEITESLAEMINLNNHVVEKSREATLHTEDLEDS ITMVRSMKECGFPIADEMIKDIRNSLTIMSAKQQKRGLIHSPASSFQMRRTSSWGPMS WGRGSENVQQDGSNYFSTVIKSARQKASNFKWPQLESKEQIQKQPQKPLSHPTPPLSV ASASTSSSIPDTEADELPLSCQMADEVHEEEEEATEDDVKPLHHNLSFMSENYDDFKA DKEAKLEQWLEGTEGKMDKSKGDTDTGGL" CDS complement(4975670..4976491) /locus_tag="TCM_043282" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18786.1" /db_xref="Phytozome:POPTR_0010s23410.1" /db_xref="TAIR:AT2G39170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUJ6" /translation="MNGFSTVDGFVEITESLAEMIKYVANEPSVGLFYVQQHTQNAVP NVVNLNNHVVEKSREATLHTEDLEDSITMVRSMKECGFPIADEMIKDIRNSLTIMSAK QQKRGLIHSPASSFQMRRTSSWGPMSWGRGSENVQQDGSNYFSTVIKSARQKASNFKW PQLESKEQIQKQPQKPLSHPTPPLSVASASTSSSIPDTEADELPLSCQMADEVHEEEE EATEDDVKPLHHNLSFMSENYDDFKADKEAKLEQWLEGTEGKMDKSKGDTDTGGL" CDS complement(4975670..4976491) /locus_tag="TCM_043282" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18787.1" /db_xref="Phytozome:POPTR_0010s23410.1" /db_xref="TAIR:AT2G39170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUJ6" /translation="MNGFSTVDGFVEITESLAEMIKYVANEPSVGLFYVQQHTQNAVP NVVNLNNHVVEKSREATLHTEDLEDSITMVRSMKECGFPIADEMIKDIRNSLTIMSAK QQKRGLIHSPASSFQMRRTSSWGPMSWGRGSENVQQDGSNYFSTVIKSARQKASNFKW PQLESKEQIQKQPQKPLSHPTPPLSVASASTSSSIPDTEADELPLSCQMADEVHEEEE EATEDDVKPLHHNLSFMSENYDDFKADKEAKLEQWLEGTEGKMDKSKGDTDTGGL" CDS complement(4975670..4976491) /locus_tag="TCM_043282" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18789.1" /db_xref="Phytozome:POPTR_0010s23410.1" /db_xref="TAIR:AT2G39170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUJ6" /translation="MNGFSTVDGFVEITESLAEMIKYVANEPSVGLFYVQQHTQNAVP NVVNLNNHVVEKSREATLHTEDLEDSITMVRSMKECGFPIADEMIKDIRNSLTIMSAK QQKRGLIHSPASSFQMRRTSSWGPMSWGRGSENVQQDGSNYFSTVIKSARQKASNFKW PQLESKEQIQKQPQKPLSHPTPPLSVASASTSSSIPDTEADELPLSCQMADEVHEEEE EATEDDVKPLHHNLSFMSENYDDFKADKEAKLEQWLEGTEGKMDKSKGDTDTGGL" mobile_element complement(4984939..4986272) /note="source:CACAO_M_E1841_F5_scaffold_1 24470 25801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4984991..4986638) /note="source:CACAO_M_E1841_F5_scaffold_1 23987 25749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4986759..4987452) /note="source:CACAO_M_E1841_F5_scaffold_1 23278 23970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4987731..4987815 /note="source:CACAO_M_E11054_F12_scaffold_2 13448 13529" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4990683..5009391 /locus_tag="TCM_043285" /note="dbxref CacaoGD:Thecc1EG043285" mRNA join(4990683..4990946,4991516..4991614,4992520..4992549, 4992728..4992787,4992990..4993159,5006953..5007015, 5007096..5007158,5007239..5007301,5007772..5008444, 5008551..5008601,5008810..5008929,5009041..5009324) /locus_tag="TCM_043285" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7" mRNA join(4990683..4990946,4991516..4991614,4992990..4993159, 5006810..5006872,5006953..5007015,5007096..5007158, 5007239..5007301,5007772..5008444,5008551..5008601, 5008810..5008929,5009041..5009324) /locus_tag="TCM_043285" /product="Uncharacterized protein isoform 3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7; inference alignment:Newbler:10:TSA:cgbaB_g00032t00001" mRNA join(4990764..4990946,4991516..4991614,4992520..4992549, 4992728..4992787,4992990..4993159,5006810..5006872, 5006953..5007015,5007096..5007158,5007239..5007301, 5007772..5008380,5008551..5008635) /locus_tag="TCM_043285" /product="Uncharacterized protein isoform 5" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00032t00002; inference alignment:Newbler:10:TSA:cgbaB_g00032t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7" mRNA join(4990764..4990946,4991516..4991614,4992520..4992549, 4992728..4992787,4992990..4993159,5006953..5007015, 5007096..5007158,5007239..5007301,5007772..5008380, 5008551..5008635) /locus_tag="TCM_043285" /product="Uncharacterized protein isoform 7" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00032t00004; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7; inference alignment:Newbler:10:TSA:cgbaB_g00032t00001" mRNA join(4990771..4990946,4991308..4991346,4991516..4991614, 4992520..4992549,4992728..4992787,4992990..4993159, 5006810..5006872,5006953..5007015,5007096..5007158, 5007239..5007301,5007772..5008380,5008551..5008635) /locus_tag="TCM_043285" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00032t00001; inference alignment:Newbler:10:TSA:cgbaB_g00032t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7" mRNA join(4990771..4990946,4991308..4991346,4991516..4991614, 4992520..4992549,4992728..4992787,4992990..4993159, 5006953..5007015,5007096..5007158,5007239..5007301, 5007772..5008380,5008551..5008635) /locus_tag="TCM_043285" /product="Uncharacterized protein isoform 4" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00032t00003; inference alignment:Newbler:10:TSA:cgbaB_g00032t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7" CDS join(4990853..4990946,4991308..4991346,4991516..4991614, 4992520..4992549,4992728..4992787,4992990..4993159, 5006810..5006872,5006953..5007015,5007096..5007158, 5007239..5007301,5007772..5008380,5008551..5008634) /locus_tag="TCM_043285" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18791.1" /translation="MGQNLEGLNLMMQSNFQQRDGSSFTGDVQPSGASQYQNTLQVNQ VPIIQNPRGQDWTWQSNLPPNAVPIFIEGPQLGGASLYQNTLQVPIIQNPGGQDWTWQ SNLQPRHAHATNMEPISVVTGGTNSLGADIMEEQSDKKTTDKTDLSQSKSAIRSRGYR AKKQKLEETNKVEIDRLRKLNDGHKKFEEEKNVEIERLRKENDAYKKLEEENKVKIEK LCKEIDAYKKIEEKNKVEIERLLEENATYKVSKIARLPEPTDQRVHYTRQLMKNMEEE QRSQLDRIEKAQEEMKDQLAKMIELMMNFNKGKRAVGDLAPAENQSIDNLRNDQPCLP RYAPSHAQTSQRVYPQMAPLVGGFPYAYYNFSPSLGPQQVQGQFGLNLGMNLTKPILV PDVDDLKEQERLKKNSLEIVENDNVKKKNDLLEERLCAVERVDRFETMDATELCLVPD VNLVEEMKRPRKEINTYQVKFSTFKCYR" CDS join(4990853..4990946,4991308..4991346,4991516..4991614, 4992520..4992549,4992728..4992787,4992990..4993159, 5006953..5007015,5007096..5007158,5007239..5007301, 5007772..5008380,5008551..5008634) /locus_tag="TCM_043285" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY18793.1" /translation="MGQNLEGLNLMMQSNFQQRDGSSFTGDVQPSGASQYQNTLQVNQ VPIIQNPRGQDWTWQSNLPPNAVPIFIEGPQLGGASLYQNTLQVPIIQNPGGQDWTWQ SNLQPRHAHATNMEPISVVTGGTNSLGADIMEEQSDKKTTDKTDLSQSKSAIRSRGYR AKKQKFEEEKNVEIERLRKENDAYKKLEEENKVKIEKLCKEIDAYKKIEEKNKVEIER LLEENATYKVSKIARLPEPTDQRVHYTRQLMKNMEEEQRSQLDRIEKAQEEMKDQLAK MIELMMNFNKGKRAVGDLAPAENQSIDNLRNDQPCLPRYAPSHAQTSQRVYPQMAPLV GGFPYAYYNFSPSLGPQQVQGQFGLNLGMNLTKPILVPDVDDLKEQERLKKNSLEIVE NDNVKKKNDLLEERLCAVERVDRFETMDATELCLVPDVNLVEEMKRPRKEINTYQVKF STFKCYR" CDS join(4990853..4990946,4991516..4991614,4992520..4992549, 4992728..4992787,4992990..4993159,5006810..5006872, 5006953..5007015,5007096..5007158,5007239..5007301, 5007772..5008380,5008551..5008634) /locus_tag="TCM_043285" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY18794.1" /translation="MGQNLEGLNLMMQSNFQQRDGSSFTGDVQPSVPIIQNPRGQDWT WQSNLPPNAVPIFIEGPQLGGASLYQNTLQVPIIQNPGGQDWTWQSNLQPRHAHATNM EPISVVTGGTNSLGADIMEEQSDKKTTDKTDLSQSKSAIRSRGYRAKKQKLEETNKVE IDRLRKLNDGHKKFEEEKNVEIERLRKENDAYKKLEEENKVKIEKLCKEIDAYKKIEE KNKVEIERLLEENATYKVSKIARLPEPTDQRVHYTRQLMKNMEEEQRSQLDRIEKAQE EMKDQLAKMIELMMNFNKGKRAVGDLAPAENQSIDNLRNDQPCLPRYAPSHAQTSQRV YPQMAPLVGGFPYAYYNFSPSLGPQQVQGQFGLNLGMNLTKPILVPDVDDLKEQERLK KNSLEIVENDNVKKKNDLLEERLCAVERVDRFETMDATELCLVPDVNLVEEMKRPRKE INTYQVKFSTFKCYR" CDS join(4990853..4990946,4991516..4991614,4992520..4992549, 4992728..4992787,4992990..4993159,5006953..5007015, 5007096..5007158,5007239..5007301,5007772..5008380, 5008551..5008634) /locus_tag="TCM_043285" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 7" /protein_id="EOY18796.1" /translation="MGQNLEGLNLMMQSNFQQRDGSSFTGDVQPSVPIIQNPRGQDWT WQSNLPPNAVPIFIEGPQLGGASLYQNTLQVPIIQNPGGQDWTWQSNLQPRHAHATNM EPISVVTGGTNSLGADIMEEQSDKKTTDKTDLSQSKSAIRSRGYRAKKQKFEEEKNVE IERLRKENDAYKKLEEENKVKIEKLCKEIDAYKKIEEKNKVEIERLLEENATYKVSKI ARLPEPTDQRVHYTRQLMKNMEEEQRSQLDRIEKAQEEMKDQLAKMIELMMNFNKGKR AVGDLAPAENQSIDNLRNDQPCLPRYAPSHAQTSQRVYPQMAPLVGGFPYAYYNFSPS LGPQQVQGQFGLNLGMNLTKPILVPDVDDLKEQERLKKNSLEIVENDNVKKKNDLLEE RLCAVERVDRFETMDATELCLVPDVNLVEEMKRPRKEINTYQVKFSTFKCYR" CDS join(4990853..4990946,4991516..4991614,4992520..4992549, 4992728..4992787,4992990..4993159,5006953..5007015, 5007096..5007158,5007239..5007301,5007772..5008404) /locus_tag="TCM_043285" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18790.1" /translation="MGQNLEGLNLMMQSNFQQRDGSSFTGDVQPSVPIIQNPRGQDWT WQSNLPPNAVPIFIEGPQLGGASLYQNTLQVPIIQNPGGQDWTWQSNLQPRHAHATNM EPISVVTGGTNSLGADIMEEQSDKKTTDKTDLSQSKSAIRSRGYRAKKQKFEEEKNVE IERLRKENDAYKKLEEENKVKIEKLCKEIDAYKKIEEKNKVEIERLLEENATYKVSKI ARLPEPTDQRVHYTRQLMKNMEEEQRSQLDRIEKAQEEMKDQLAKMIELMMNFNKGKR AVGDLAPAENQSIDNLRNDQPCLPRYAPSHAQTSQRVYPQMAPLVGGFPYAYYNFSPS LGPQQVQGQFGLNLGMNLTKPILVPDVDDLKEQERLKKNSLEIVENDNVKKKNDLLEE RLCAVERVDRFETMDATELCLVPDVVIPVDLF" CDS join(4990853..4990946,4991516..4991614,4992990..4993159, 5006810..5006872,5006953..5007015,5007096..5007158, 5007239..5007301,5007772..5008404) /locus_tag="TCM_043285" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY18792.1" /translation="MGQNLEGLNLMMQSNFQQRDGSSFTGDVQPSVPIIQNPRGQDWT WQSNLPPNAVPIFIEGPQLGGHAHATNMEPISVVTGGTNSLGADIMEEQSDKKTTDKT DLSQSKSAIRSRGYRAKKQKLEETNKVEIDRLRKLNDGHKKFEEEKNVEIERLRKEND AYKKLEEENKVKIEKLCKEIDAYKKIEEKNKVEIERLLEENATYKVSKIARLPEPTDQ RVHYTRQLMKNMEEEQRSQLDRIEKAQEEMKDQLAKMIELMMNFNKGKRAVGDLAPAE NQSIDNLRNDQPCLPRYAPSHAQTSQRVYPQMAPLVGGFPYAYYNFSPSLGPQQVQGQ FGLNLGMNLTKPILVPDVDDLKEQERLKKNSLEIVENDNVKKKNDLLEERLCAVERVD RFETMDATELCLVPDVVIPVDLF" mRNA join(4990879..4990946,4991516..4991614,4992520..4992549, 4992728..4992787,4992990..4993159,5006953..5007015, 5007096..5007158,5007239..5007301,5007772..5008573) /locus_tag="TCM_043285" /product="Uncharacterized protein isoform 9" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc516t14; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7; inference alignment:Newbler:10:TSA:cgbaB_g00032t00001" CDS join(4990883..4990946,4991516..4991614,4992520..4992549, 4992728..4992787,4992990..4993159,5006953..5007015, 5007096..5007158,5007239..5007301,5007772..5008404) /locus_tag="TCM_043285" /note="encoded by transcript variant 9; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 9" /protein_id="EOY18798.1" /translation="MMQSNFQQRDGSSFTGDVQPSVPIIQNPRGQDWTWQSNLPPNAV PIFIEGPQLGGASLYQNTLQVPIIQNPGGQDWTWQSNLQPRHAHATNMEPISVVTGGT NSLGADIMEEQSDKKTTDKTDLSQSKSAIRSRGYRAKKQKFEEEKNVEIERLRKENDA YKKLEEENKVKIEKLCKEIDAYKKIEEKNKVEIERLLEENATYKVSKIARLPEPTDQR VHYTRQLMKNMEEEQRSQLDRIEKAQEEMKDQLAKMIELMMNFNKGKRAVGDLAPAEN QSIDNLRNDQPCLPRYAPSHAQTSQRVYPQMAPLVGGFPYAYYNFSPSLGPQQVQGQF GLNLGMNLTKPILVPDVDDLKEQERLKKNSLEIVENDNVKKKNDLLEERLCAVERVDR FETMDATELCLVPDVVIPVDLF" mRNA join(4991590..4991614,4992520..4992549,4992728..4992924, 4992990..4993159,5006953..5007015,5007096..5007158, 5007239..5007301,5007772..5008380,5008551..5008601, 5008810..5008929,5009041..5009391) /locus_tag="TCM_043285" /product="Uncharacterized protein isoform 6" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc521t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7; inference alignment:Newbler:10:TSA:cgbaB_g00032t00001" mRNA join(4991590..4991614,4992990..4993159,5006810..5006872, 5006953..5007015,5007096..5007158,5007239..5007301, 5007772..5008380,5008551..5008601,5008810..5008929, 5009041..5009391) /locus_tag="TCM_043285" /product="Uncharacterized protein isoform 8" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc521t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7; inference alignment:Newbler:10:TSA:cgbaB_g00032t00001" mRNA join(4991590..4991614,4992990..4993159,5006953..5007015, 5007096..5007158,5007239..5007301,5007772..5008444, 5008551..5008601,5008810..5008929,5009041..5009391) /locus_tag="TCM_043285" /product="Uncharacterized protein isoform 11" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037609t1" /note="transcript variant 11; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc521t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7; inference alignment:Newbler:10:TSA:cgbaB_g00032t00001" mRNA join(4991590..4991614,4992990..4993159,5006953..5007015, 5007096..5007158,5007239..5007301,5007772..5008380, 5008551..5008601,5008810..5008929,5009041..5009391) /locus_tag="TCM_043285" /product="Uncharacterized protein isoform 6" /note="transcript variant 12; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc521t12; alternateUTRof:Thecc1EG043285t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7; inference alignment:Newbler:10:TSA:cgbaB_g00032t00001" mRNA join(4992759..4992787,4992990..4993159,5006810..5006872, 5006953..5007015,5007096..5007158,5007239..5007301, 5007772..5008380,5008551..5008601,5008810..5008929, 5009041..5009391) /locus_tag="TCM_043285" /product="Uncharacterized protein isoform 8" /note="transcript variant 10; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc526t9; alternateUTRof:Thecc1EG043285t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7; inference alignment:Newbler:10:TSA:cgbaB_g00032t00001" mRNA join(4992759..4992787,4992990..4993159,5006953..5007015, 5007096..5007158,5007239..5007301,5007772..5008380, 5008551..5008601,5008810..5008929,5009041..5009391) /locus_tag="TCM_043285" /product="Uncharacterized protein isoform 6" /note="transcript variant 13; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc526t12; alternateUTRof:Thecc1EG043285t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2903t7; inference alignment:Newbler:10:TSA:cgbaB_g00032t00001" CDS join(4993010..4993159,5006810..5006872,5006953..5007015, 5007096..5007158,5007239..5007301,5007772..5008380, 5008551..5008601,5008810..5008929,5009041..5009100) /locus_tag="TCM_043285" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 8" /protein_id="EOY18797.1" /translation="MEPISVVTGGTNSLGADIMEEQSDKKTTDKTDLSQSKSAIRSRG YRAKKQKLEETNKVEIDRLRKLNDGHKKFEEEKNVEIERLRKENDAYKKLEEENKVKI EKLCKEIDAYKKIEEKNKVEIERLLEENATYKVSKIARLPEPTDQRVHYTRQLMKNME EEQRSQLDRIEKAQEEMKDQLAKMIELMMNFNKGKRAVGDLAPAENQSIDNLRNDQPC LPRYAPSHAQTSQRVYPQMAPLVGGFPYAYYNFSPSLGPQQVQGQFGLNLGMNLTKPI LVPDVDDLKEQERLKKNSLEIVENDNVKKKNDLLEERLCAVERVDRFETMDATELCLV PDVNLVEEMKRPRKEINTYQVELGWLRKKHKECKGKEYRRRTIKTLESLLVQNSCILI IWENTSSLEAKAQNAYSSMYA" CDS join(4993010..4993159,5006810..5006872,5006953..5007015, 5007096..5007158,5007239..5007301,5007772..5008380, 5008551..5008601,5008810..5008929,5009041..5009100) /locus_tag="TCM_043285" /note="encoded by transcript variant 10; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 8" /protein_id="EOY18799.1" /translation="MEPISVVTGGTNSLGADIMEEQSDKKTTDKTDLSQSKSAIRSRG YRAKKQKLEETNKVEIDRLRKLNDGHKKFEEEKNVEIERLRKENDAYKKLEEENKVKI EKLCKEIDAYKKIEEKNKVEIERLLEENATYKVSKIARLPEPTDQRVHYTRQLMKNME EEQRSQLDRIEKAQEEMKDQLAKMIELMMNFNKGKRAVGDLAPAENQSIDNLRNDQPC LPRYAPSHAQTSQRVYPQMAPLVGGFPYAYYNFSPSLGPQQVQGQFGLNLGMNLTKPI LVPDVDDLKEQERLKKNSLEIVENDNVKKKNDLLEERLCAVERVDRFETMDATELCLV PDVNLVEEMKRPRKEINTYQVELGWLRKKHKECKGKEYRRRTIKTLESLLVQNSCILI IWENTSSLEAKAQNAYSSMYA" CDS join(4993010..4993159,5006953..5007015,5007096..5007158, 5007239..5007301,5007772..5008380,5008551..5008601, 5008810..5008929,5009041..5009100) /locus_tag="TCM_043285" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY18795.1" /translation="MEPISVVTGGTNSLGADIMEEQSDKKTTDKTDLSQSKSAIRSRG YRAKKQKFEEEKNVEIERLRKENDAYKKLEEENKVKIEKLCKEIDAYKKIEEKNKVEI ERLLEENATYKVSKIARLPEPTDQRVHYTRQLMKNMEEEQRSQLDRIEKAQEEMKDQL AKMIELMMNFNKGKRAVGDLAPAENQSIDNLRNDQPCLPRYAPSHAQTSQRVYPQMAP LVGGFPYAYYNFSPSLGPQQVQGQFGLNLGMNLTKPILVPDVDDLKEQERLKKNSLEI VENDNVKKKNDLLEERLCAVERVDRFETMDATELCLVPDVNLVEEMKRPRKEINTYQV ELGWLRKKHKECKGKEYRRRTIKTLESLLVQNSCILIIWENTSSLEAKAQNAYSSMYA " CDS join(4993010..4993159,5006953..5007015,5007096..5007158, 5007239..5007301,5007772..5008380,5008551..5008601, 5008810..5008929,5009041..5009100) /locus_tag="TCM_043285" /note="encoded by transcript variant 12; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY18801.1" /translation="MEPISVVTGGTNSLGADIMEEQSDKKTTDKTDLSQSKSAIRSRG YRAKKQKFEEEKNVEIERLRKENDAYKKLEEENKVKIEKLCKEIDAYKKIEEKNKVEI ERLLEENATYKVSKIARLPEPTDQRVHYTRQLMKNMEEEQRSQLDRIEKAQEEMKDQL AKMIELMMNFNKGKRAVGDLAPAENQSIDNLRNDQPCLPRYAPSHAQTSQRVYPQMAP LVGGFPYAYYNFSPSLGPQQVQGQFGLNLGMNLTKPILVPDVDDLKEQERLKKNSLEI VENDNVKKKNDLLEERLCAVERVDRFETMDATELCLVPDVNLVEEMKRPRKEINTYQV ELGWLRKKHKECKGKEYRRRTIKTLESLLVQNSCILIIWENTSSLEAKAQNAYSSMYA " CDS join(4993010..4993159,5006953..5007015,5007096..5007158, 5007239..5007301,5007772..5008380,5008551..5008601, 5008810..5008929,5009041..5009100) /locus_tag="TCM_043285" /note="encoded by transcript variant 13; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY18802.1" /translation="MEPISVVTGGTNSLGADIMEEQSDKKTTDKTDLSQSKSAIRSRG YRAKKQKFEEEKNVEIERLRKENDAYKKLEEENKVKIEKLCKEIDAYKKIEEKNKVEI ERLLEENATYKVSKIARLPEPTDQRVHYTRQLMKNMEEEQRSQLDRIEKAQEEMKDQL AKMIELMMNFNKGKRAVGDLAPAENQSIDNLRNDQPCLPRYAPSHAQTSQRVYPQMAP LVGGFPYAYYNFSPSLGPQQVQGQFGLNLGMNLTKPILVPDVDDLKEQERLKKNSLEI VENDNVKKKNDLLEERLCAVERVDRFETMDATELCLVPDVNLVEEMKRPRKEINTYQV ELGWLRKKHKECKGKEYRRRTIKTLESLLVQNSCILIIWENTSSLEAKAQNAYSSMYA " CDS join(4993010..4993159,5006953..5007015,5007096..5007158, 5007239..5007301,5007772..5008404) /locus_tag="TCM_043285" /note="encoded by transcript variant 11; alternatively spliced; paralog of Thecc1EG037609t1" /codon_start=1 /product="Uncharacterized protein isoform 11" /protein_id="EOY18800.1" /translation="MEPISVVTGGTNSLGADIMEEQSDKKTTDKTDLSQSKSAIRSRG YRAKKQKFEEEKNVEIERLRKENDAYKKLEEENKVKIEKLCKEIDAYKKIEEKNKVEI ERLLEENATYKVSKIARLPEPTDQRVHYTRQLMKNMEEEQRSQLDRIEKAQEEMKDQL AKMIELMMNFNKGKRAVGDLAPAENQSIDNLRNDQPCLPRYAPSHAQTSQRVYPQMAP LVGGFPYAYYNFSPSLGPQQVQGQFGLNLGMNLTKPILVPDVDDLKEQERLKKNSLEI VENDNVKKKNDLLEERLCAVERVDRFETMDATELCLVPDVVIPVDLF" misc_feature join(4993130..4993159,4996628..4997154) /locus_tag="TCM_043285" /note="Gene fragment of Thecc1EG043285t1; dbxref gnl|CacaoGD|Thecc1EG043285t1; quality class is mediumpartial-partof is thecc1eg043285t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc507t1; dbxref CacaoGD:Thecc1EG043286t1" gene 4993136..5014505 /locus_tag="TCM_043287" /note="dbxref CacaoGD:Thecc1EG043287" mRNA join(4993136..4993159,5014214..5014505) /locus_tag="TCM_043287" /product="Uncharacterized protein" /note="quality class is strong-expresste, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9728t12" gene complement(4994184..4997025) /locus_tag="TCM_043288" /note="dbxref CacaoGD:Thecc1EG043288" mRNA complement(join(4994184..4994833,4996616..4996672, 4996824..4997025)) /locus_tag="TCM_043288" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(join(4994654..4994833,4996616..4996672, 4996824..4996847)) /locus_tag="TCM_043288" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18804.1" /translation="MGPIGDWNVRADGWRSLNGDVRSLRVMLEPSGCYGACERWSANK IKELEKENVVVWGREVLIKVVACAVLHTLWLASNLERSFLRE" mobile_element complement(4996951..5002238) /note="source:INTACT258_F187_scaffold_10-int 1 5288" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5009925..5010055) /note="source:CACAO_hAT_E410_scaffold_1 1947 2080" /mobile_element_type="transposon:TIR/hAT" CDS 5014231..5014428 /locus_tag="TCM_043287" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18803.1" /translation="MEVINGVLEEFYACSRQKVNVEKSLFYCSRNVGKGTINNLMCCF GFQYSDDLRKYPGVPLLSGLR" gene 5016491..5018634 /locus_tag="TCM_043289" /note="dbxref CacaoGD:Thecc1EG043289" mRNA join(5016491..5016958,5017097..5017640,5018400..5018634) /locus_tag="TCM_043289" /product="Ribonuclease H-like protein" /inference="alignment:exonerate- protein:2:ricco:30078.m002299.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019892t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS join(5016508..5016958,5017097..5017365) /locus_tag="TCM_043289" /note="paralog of Thecc1EG019892t1" /codon_start=1 /product="Ribonuclease H-like protein" /protein_id="EOY18805.1" /translation="MIHVLRDCMMVTSLWVRIIPQHEHNKFFTLSLREWLICNLQKHQ PLLGENPWSVVFGLACWHLWKWRNSVVFNAISITTRNCLSLVRSMATATTTALADFDG VQVERGTKEKILIRWRAPQAGWLSLNTDGAYKKSTDEAAVGGVIRNSVDGSSSGFDDK LIPCANMDLIRAIKGILQNKWEVHLVHIYREGNMVADYMAKYGFDSANSYVSFEYPPP GLRKILMYNMLGVCLPRMILG" mobile_element complement(5021771..5022795) /note="source:CACAO_hAT_E1920_scaffold_4 1 1030" /mobile_element_type="transposon:TIR/hAT" gene 5025348..5026037 /locus_tag="TCM_043290" /note="dbxref CacaoGD:Thecc1EG043290" mRNA join(5025348..5025531,5025648..5026037) /locus_tag="TCM_043290" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS join(5025428..5025531,5025648..5025987) /locus_tag="TCM_043290" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18806.1" /translation="MREVKGIGLRTNGVKSNVGRSEDQRRMCRRLLGLGFCKWVSASV EVCSSPEKTIGCELVLERTLGEKNLELEEDLRNGNEKLSARSIKDLDNQQMKELIVNE GGSKENSMEKEKDLTKDGRERGDAFTASEVEEDKNEEFNIAVEEK" gene 5026108..5028387 /locus_tag="TCM_043291" /note="dbxref CacaoGD:Thecc1EG043291" mRNA join(5026108..5026412,5027444..5028387) /locus_tag="TCM_043291" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS join(5026126..5026412,5027444..5027681) /locus_tag="TCM_043291" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18807.1" /translation="MVTRGSDSKSNRSGKVKEDSLVDCYVEGEGSASVPEMDIRRRKS MLRSDAEEIWEFYSEIGIGFSGGKGGRYLQVGGIRVCGCKQRTPSGPVQHLRNRKKVS LVIGFPAATTSKKRGGNGGRKGERSDVVMENLVAELRSISSAIERSREDFKMIADFIA RKEAWLCLPKPVKD" mobile_element 5028862..5029109 /note="source:INTACT687_F13_scaffold_3-int 1315 1587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5029807..5030189 /note="source:INTACT687_F13_scaffold_3-int 1634 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5030225..5030700 /note="source:CACAO_MITE_S250_scaffold_10 2 495" /mobile_element_type="transposon:TIR/MITE" mobile_element 5030794..5031260 /note="source:CACAO_MITE_S250_scaffold_10 487 946" /mobile_element_type="transposon:TIR/MITE" mobile_element 5035151..5035334 /note="source:scaffold_9_CACTA_0943 5697 5858" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5035649..5035817 /note="source:scaffold_9_CACTA_0943 5674 5858" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5036144..5037087) /note="source:CACAO_M_E49279_F74_scaffold_6 1002 1928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5037715..5039800) /note="source:CACAO_Again_on_E227_scaffold_10 1 2086" /mobile_element_type="transposon:TIR/hAT" mobile_element 5041682..5042347 /note="source:scaffold_2_CACTA_0256 17435 18016" /mobile_element_type="transposon:TIR/CACTA" gene 5042958..5045242 /locus_tag="TCM_043293" /note="dbxref CacaoGD:Thecc1EG043293" mRNA join(5042958..5043928,5045061..5045242) /locus_tag="TCM_043293" /product="RNA recognition motif and CCHC-type zinc finger domains containing protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054114" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043295t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23420.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc496t9" CDS 5043073..5043855 /locus_tag="TCM_043293" /note="paralog of Thecc1EG043295t1" /codon_start=1 /product="RNA recognition motif and CCHC-type zinc finger domains containing protein" /protein_id="EOY18808.1" /db_xref="Phytozome:POPTR_0010s23420.1" /db_xref="TAIR:AT3G10400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAE4" /translation="MTLKRKSTSNSDSEEDETFYFRYSSAAAPPSSSSSKPSNPNQTI SKCTGGGGGSSGLAPSKSTLYVSNIDYSLTNSDLHTLFSTFGKIARVTVLKDSVTRIS KGVAFIQFVSRDDALSAERVMHGKVLNGRTLSTSIAVDNGRAPEFIRKRVYKDKSRCY ECGVSGHLSYECPKNQLGPRERPVSKKGRRGCGGGERREDNGDWSDEELDGGVGFEEE NWASVVDGSAEERLRKAEMVEEKKKKVARKASYFSDESDEEE" gene complement(5045176..5056273) /locus_tag="TCM_043294" /note="dbxref CacaoGD:Thecc1EG043294" mRNA complement(join(5045176..5045202,5045938..5045988, 5046085..5046176,5046506..5046593,5046677..5046803, 5056194..5056273)) /locus_tag="TCM_043294" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043296t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03490.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc393t19" CDS complement(join(5045962..5045988,5046085..5046176, 5046506..5046593,5046677..5046733)) /locus_tag="TCM_043294" /note="paralog of Thecc1EG043296t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18809.1" /db_xref="Phytozome:POPTR_0008s03490.1" /db_xref="TAIR:AT3G10405.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLG8" /translation="MLYLLEGKIVVLNLFLDEMIARSLPRICFFSDLSGEEMMMFIDA FPETEPAVFAALVPNSADKPVAELIDEIMGDHEMLTAQQSGST" mobile_element complement(5047227..5048611) /note="source:CACAO_M_E84995_F60_scaffold_10 5428 6824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5050030..5050559) /note="source:CACAO_M_E85213_F73_scaffold_10 1854 2383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5050898..5052750) /note="source:CACAO_M_E85213_F73_scaffold_10 1 1853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5052926..5053999 /note="source:INTACT167_F5_scaffold_2-int 4030 5159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5054513..5055060) /note="source:CACAO_M_E35511_F5_scaffold_5 8743 9288" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5055119..5056654) /note="source:CACAO_M_E85211_F17_scaffold_10 1 1536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5056866..5056990 /note="source:INTACT146F_F14_scaffold_2-int 12834 12966" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5059761..5062032 /locus_tag="TCM_043295" /note="dbxref CacaoGD:Thecc1EG043295" mRNA join(5059761..5060718,5061870..5062032) /locus_tag="TCM_043295" /product="RNA recognition motif and CCHC-type zinc finger domains containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23420.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043293t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23420.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7977t10" CDS 5059872..5060645 /locus_tag="TCM_043295" /note="paralog of Thecc1EG043293t1" /codon_start=1 /product="RNA recognition motif and CCHC-type zinc finger domains containing protein" /protein_id="EOY18810.1" /db_xref="Phytozome:POPTR_0010s23420.1" /db_xref="TAIR:AT3G10400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAE4" /translation="MTQKRKSTTNSDSEEDETFYFRYSSVAAPPSSSSSNPNQITSKS TGGGGGSSGLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGKIARVSVLKDRVTRKPKGV AFIQFVSRDGALSAERVMHGKVLNGRTLSASIAIDNGRAPEFIRKRVYKDKSRCYECG VTGHLSYECPKNQLGPRERPVPKKGRRGCGGGERREDNGDWADEESDGGDGFEEENWA SVVDGAAEERLRKAEMVEEKKKKVTRKVSYFSDESDEEE" gene complement(5062312..5066971) /locus_tag="TCM_043296" /note="dbxref CacaoGD:Thecc1EG043296" mRNA complement(join(5062312..5062782,5062882..5062979, 5063303..5063390,5063474..5063593,5064236..5064319, 5064903..5064944,5065195..5065266,5065581..5065622, 5065882..5065955,5066750..5066971)) /locus_tag="TCM_043296" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03490.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03490.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8398t7" mRNA complement(join(5062388..5062782,5062882..5062979, 5063303..5063390,5064236..5064319,5064903..5064944, 5065581..5065622,5065882..5065955,5066750..5066967)) /locus_tag="TCM_043296" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene23458" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03490.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2897t3; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8398t7; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1394t2" CDS complement(join(5062756..5062782,5062882..5062979, 5063303..5063390,5064236..5064319,5064903..5064944, 5065581..5065622,5065882..5065955,5066750..5066930)) /locus_tag="TCM_043296" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18812.1" /db_xref="Phytozome:POPTR_0008s03490.1" /db_xref="TAIR:AT3G10405.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLG8" /translation="MAFSVGFCQNILAKSQASLIPPVFAVSHSSVVSSLSAKNAACHH KKKLKQPRGLTRASAEGLPSELVEDSKFVPLNADDPTYGPPALLLLGFEVEEAEKIRQ FLKEMDGEFLEIIYCTEDMITRSLWEAVNTRQPNLEEVKISKSLPRICFFSGLSGEEM MMFIDAFPETGLEPAVFAALVPNSADKPVAELIDEIMGDHEMLTAQQSGST" CDS complement(join(5062756..5062782,5062882..5062979, 5063303..5063390,5063474..5063593,5064236..5064319, 5064903..5064944,5065195..5065266,5065581..5065622, 5065882..5065955,5066750..5066930)) /locus_tag="TCM_043296" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18811.1" /db_xref="Phytozome:POPTR_0008s03490.1" /db_xref="TAIR:AT3G10405.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLG8" /translation="MAFSVGFCQNILAKSQASLIPPVFAVSHSSVVSSLSAKNAACHH KKKLKQPRGLTRASAEGLPSELVEDSKFVPLNADDPTYGPPALLLLGFEVEEAEKDLF LRDGLVANLAMPKQLSCEEGKIRQFLKEMDGEFLEIIYCTEDMITRSLWEAVNTRQPN LEEVKKQQIPCSFNRLILFRLPETIMLLCLSEGKIVVLNLFLDEMISKSLPRICFFSG LSGEEMMMFIDAFPETGLEPAVFAALVPNSADKPVAELIDEIMGDHEMLTAQQSGST" mobile_element complement(5067816..5067953) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3183 3324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5067849..5067876 /note="source:scaffold_1_CACTA_0011 7464 7570" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5071997..5072821) /note="source:INTACT43_F19_scaffold_6-int 2372 3209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5072822..5083044) /note="source:CACAO_M_E85210_F12_scaffold_10 1 10223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5083045..5085059 /note="source:INTACT42_F19_scaffold_5-int 84 2864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5085049..5085275 /note="source:INTACT42_F19_scaffold_5-int 313 536" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5090834..5095639 /locus_tag="TCM_043300" /note="dbxref CacaoGD:Thecc1EG043300" mRNA join(5090834..5091331,5092649..5092817,5093006..5093125, 5093282..5093425,5093540..5093690,5093916..5094004, 5094551..5094809,5094917..5095050,5095145..5095639) /locus_tag="TCM_043300" /product="Serine carboxypeptidase-like 49" /inference="alignment:exonerate- protein:2:ricco:29745.m000364" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042149t1" /inference="similar to AA sequence:ricco:29745.m000364" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4431t1" CDS join(5090997..5091331,5092649..5092817,5093006..5093125, 5093282..5093425,5093540..5093690,5093916..5094004, 5094551..5094809,5094917..5095050,5095145..5095270) /locus_tag="TCM_043300" /note="dbxref ricco:29745.m000364; paralog of Thecc1EG042149t1" /codon_start=1 /product="Serine carboxypeptidase-like 49" /protein_id="EOY18813.1" /db_xref="TAIR:AT3G10410.1" /translation="MANPKILYPFSVSLLFLISISSAAASSFLDERRLGGSSFPSIHA KKLIRELNLFPKEEVNVVDGGQVSLPEDSRLVEKRFKFPNLAVPGGVSVEDLGHHAGY YKLANSHDARMFYFFFESRNSKKDPVVIWLTGGPGCSSELALFYENGPFTIAENMSLI WNQYGWDMASNLLYVDQPIGTGFSYSSDRRDIRHNEDEVSNDLYDFLQAFFAEHPEFE KNDFYITGESYAGHYIPAFAARVHQGNKAKDGIHINLKGFAIGNGLTDPAIQYKAYTD YALDMGVIKKSDYNRINKLVPVCEMAIKLCGTDGTISCMASYFVCNAIFTGIMALAGD TNYYDIRTKCEGSLCYDFSNMETFLNQESVRDALGVGSIDFVSCSPTVYQAMLVDWMR NLEVGIPALLEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKEFVASPEVPFVVD GSEAGVLKTHGPLGFLKVHDAGHMVPMDQPKAALEMLKRWTKGTLSEAADSEKLVAEI " gene 5095608..5101252 /locus_tag="TCM_043302" /note="dbxref CacaoGD:Thecc1EG043302" mRNA join(5095608..5096116,5099107..5099257,5099470..5099581, 5100078..5101252) /locus_tag="TCM_043302" /product="Dehydration-responsive element-binding protein 2C" /inference="alignment:exonerate-protein:2:frave:gene21047" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043306t1" /inference="similar to AA sequence:ricco:29729.m002292" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.17 coverage" CDS join(5096090..5096116,5099107..5099257,5099470..5099581, 5100078..5101068) /locus_tag="TCM_043302" /note="dbxref ricco:29729.m002292; paralog of Thecc1EG043306t1" /codon_start=1 /product="Dehydration-responsive element-binding protein 2C" /protein_id="EOY18814.1" /db_xref="TAIR:AT2G40340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S475" /translation="MSFISNSKQGFAIGNGLTDPAIQNKAYLDYALDMGVIKKSDYNP INKLVPVCETAIKLCAGVDILYIVMDIQCNEILVVQLIKEIKVIFGDVASMGRGFQIP ELLFTTLDHDCKKDQNLKVASTLSSDSCRKRKRRDGLSVADTLKLWSQSKDAKQSCKA PAKGSKKGCMKGKGGPQNQSCNYRGVRQRTWGKWVAEIRAPNGGKRIWLGTFPTACEA ALAYDEAARTMYGENAILNMPHISGSDSVATTSHAFSEATTCAASNSMTVPSNYEICG RDVDREGEPSRMNVEYTVDSETAWTMDGENAMLNMPHVSDFDSVTITSPVFLEATTCT ASNSMTGSSNSEICGRDVDGEGEPSKMNVEYTVDSEAATTSQDVKTDAKSEEHTDDSW LTNGLDYAKNIAIDFGETADWFEDYCFNVPEFFD" gene complement(5101255..5110883) /locus_tag="TCM_043303" /note="dbxref CacaoGD:Thecc1EG043303" mRNA complement(join(5101255..5101832,5101951..5102268, 5110535..5110883)) /locus_tag="TCM_043303" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007152t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s30690.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS complement(join(5101575..5101832,5101951..5102121)) /locus_tag="TCM_043303" /note="paralog of Thecc1EG007152t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18815.1" /db_xref="Phytozome:POPTR_0001s30690.1" /translation="MHVTPDSVGRAVLLEEKYGSSLCSRSSGLLSADVIMIFVSEALT SLQAFPVTWNFNFFPDVTFNLPYRTLISFVNYMGNYSGDVKREFTGIIVHEADHVEQW NGNGQTLGGLIEGIADYIRLKAGYAPPHWVRQIIDLLCIC" gene 5102107..5102854 /locus_tag="TCM_043304" /note="dbxref CacaoGD:Thecc1EG043304" mRNA 5102107..5102854 /locus_tag="TCM_043304" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031647t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8257t6" CDS 5102317..5102679 /locus_tag="TCM_043304" /note="paralog of Thecc1EG031647t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18816.1" /translation="MESYPSAKSRCKSSENSLVFPTQCIRHSVGTTCTDMEFMFDPKF VYRDGVMVPIDSNKEVSFHCKLKTLCLRSLRVYLHVHDACHMVPMDQPKAALEMLKLW TRGTLSEAADLEKLAAEI" mobile_element complement(5103545..5103920) /note="source:CACAO_M_S_E101631_F270_scaffold_9 21618 21992" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5103913..5108181) /note="source:INTACT603_F270_scaffold_9-int 1 4298" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5108244..5108470 /note="source:scaffold_5_CACTA_0584 1676 1897" /mobile_element_type="transposon:TIR/CACTA" gene 5110979..5113406 /locus_tag="TCM_043306" /note="dbxref CacaoGD:Thecc1EG043306" mRNA join(5110979..5111038,5111242..5113406) /locus_tag="TCM_043306" /product="Dehydration-responsive element-binding protein 2C" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19100.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043302t1" /inference="similar to AA sequence:ricco:29729.m002292" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2942t1" CDS 5111588..5112745 /locus_tag="TCM_043306" /note="dbxref ricco:29729.m002292; paralog of Thecc1EG043302t1" /codon_start=1 /product="Dehydration-responsive element-binding protein 2C" /protein_id="EOY18817.1" /db_xref="TAIR:AT2G40340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S475" /translation="MDQNLKVASTLSSDSCRKRKRRDGLSVADTLKLWSQGKDAKQSC KAPAKGSKKGCMKGKGGPQNQRCNYRGVRQRTWGKWVAEIRAPNGGKRIWLGTFPTAC EAALAYDEAARTMYGENAIINMPHISRFDSVATTSHAFSEASTCSASNSMTVPSNYEI CGRDVDGEGEPSRMNVEYTVDSETAWTMHGENATLNMPHVSDFDSVSITSPVFSEATT CSASNSMTVPINYEICGRDVDGEGEPSGMNVEYTVDSETAWTMDGENATLNMPHVADF DSVTITSPVFSEATTCAPSNSVTVSSNSEICERDVDGEGEPSKMNIEYTADSEAATTS QDVKTDAKSEDHTDDSWLTNGLDFAKNIAIDFGETADWFEDYYFDVPEFFD" gene complement(5114346..5118353) /locus_tag="TCM_043307" /note="dbxref CacaoGD:Thecc1EG043307" mRNA complement(join(5114346..5114612,5114715..5114909, 5115636..5115757,5116822..5116924,5117792..5117868, 5118054..5118353)) /locus_tag="TCM_043307" /product="Vacuolar protein sorting-associated protein 24" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042150t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s03470.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4333t1" CDS complement(join(5114532..5114612,5114715..5114909, 5115636..5115757,5116822..5116924,5117792..5117868, 5118054..5118165)) /locus_tag="TCM_043307" /note="paralog of Thecc1EG042150t2" /codon_start=1 /product="Vacuolar protein sorting-associated protein 24" /protein_id="EOY18818.1" /db_xref="Phytozome:POPTR_0008s03470.1" /db_xref="TAIR:AT5G22950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFB3" /translation="MDKFKSMLKPKTNPQQLLRDWQRKLRQECRNIERQIRDVQREEK SVQKAIREAAKRNDIGSAKALAKEIVMSRKAVNRLYENKAQLNSISMHLGESVAIART VGHLSKSAEVMKLVNNLMKAPEMAATMQEFSKEMTKAGVIEEIVNDALDTALDSEDIE EETEEEVDKVLSEIAGETAAQLPEAVRKERVRVPTQRESTSHEEEAITEGADDEEELE EIRARLARVRS" gene complement(5118878..5123489) /locus_tag="TCM_043308" /note="dbxref CacaoGD:Thecc1EG043308" mRNA complement(join(5118878..5119364,5119682..5119748, 5120574..5120661,5121673..5121870,5122666..5122751, 5123341..5123489)) /locus_tag="TCM_043308" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23450.1" /inference="similar to AA sequence:ricco:29745.m000363" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09285t00001" mRNA complement(join(5118883..5119364,5119682..5119748, 5120574..5120661,5121673..5121912,5123193..>5123211)) /locus_tag="TCM_043308" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022272t1" /inference="similar to AA sequence:ricco:29745.m000363" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17361t1; inference alignment:Newbler:10:TSA:cgbaP1_g09285t00001" CDS complement(join(5119311..5119364,5119682..5119748, 5120574..5120661,5121673..5121870,5122666..5122751, 5123341..5123423)) /locus_tag="TCM_043308" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29745.m000363" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY18819.1" /db_xref="TAIR:AT3G54880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TM29" /translation="MTEGRNEGKVGNEMKGNQTEAMNNTTKQNSVAFFLDSLDQELDG YMGIFSFSWEENGDLGGTLVDKYCNYCQREWSFGLEMMEVNAGNSRSNEKQQSECPKS ADKGKKPAEKDASSSVFVNHAAIAWHENRRRWVGDKSQQSQRVSKDPVISWSTTYEEL LLTNEPFPESISLPEMVDFLVDIWHDDGLFD" CDS complement(join(5119311..5119364,5119682..5119748, 5120574..5120661,5121673..5121912,5123193..>5123211)) /locus_tag="TCM_043308" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29745.m000363; paralog of Thecc1EG022272t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18820.1" /db_xref="TAIR:AT3G54880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TM29" /translation="IFFLSEVILKSCHFLWINYQGDLGGTLVDKYCNYCQREWSFGLE MMEVNAGNSRSNEKQQSECPKSADKGKKPAEKDASSSVFVNHAAIAWHENRRRWVGDK SQQSQRVSKDPVISWSTTYEELLLTNEPFPESISLPEMVDFLVDIWHDDGLFD" mobile_element complement(5124320..5126013) /note="source:scaffold_10_CACTA_0130 7916 9607" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5126171..5127030) /note="source:CACAO_M_S_E38315_F276_scaffold_4 21061 21937" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5127119..5127332) /note="source:CACAO_M_S_E38315_F276_scaffold_4 8373 8553" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5129347..5132226) /note="source:CACAO_on_E565_scaffold_5 3060 5938" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5132105..5132265 /note="source:CACAO_M_E43916_F9_scaffold_5 5831 5979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5132647..5132878) /note="source:scaffold_10_CACTA_0130 6253 6483" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5134355..5136098) /note="source:CACAO_M_E85205_F3_scaffold_10 1 1744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5136963..5137235) /note="source:CACAO_on_E33_A_scaffold_3 7610 7901" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(5137776..5162935) /locus_tag="TCM_043311" /note="dbxref CacaoGD:Thecc1EG043311" mRNA complement(join(5137776..5137970,5154584..5156196, 5158907..5159659,5162373..5162935)) /locus_tag="TCM_043311" /product="HXXXD-type acyl-transferase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03350.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03430.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc14875t1; inference alignment:Newbler:10:TSA:cgbaP1_g09605t00001" mobile_element 5142008..5143444 /note="source:CACAO_M_S_E38315_F276_scaffold_4 1 1436" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5143445..5144515) /note="source:INTACT599_F268_scaffold_9-int 9910 10979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5144802..5146193) /note="source:INTACT599_F268_scaffold_9-int 8234 9624" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5146190..5147874) /note="source:INTACT622_F276_scaffold_7-int 4515 6199" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5151024..5152431 /note="source:CACAO_M_S_E38315_F276_scaffold_4 22866 24273" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(5155092..5156196,5158907..5159556)) /locus_tag="TCM_043311" /codon_start=1 /product="HXXXD-type acyl-transferase family protein, putative" /protein_id="EOY18821.1" /db_xref="Phytozome:POPTR_0008s03430.1" /db_xref="TAIR:AT3G26040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T559" /translation="MFGVQSVVDRIVRLDILTLAEASVTFPPRNPMPPKYLSMMDNLW FSEANYMTRRFIFDAKALSQLRAIAKGEREATPSRIRAVSGFIWKCFVAASRAISGSP KPSIFVQALSLRPGGKPNLLDDSIGNLFWWASATTSAGTGAELFELVDLMRESIAGFD DEYLNSLQGEQGFEAIAEYLDQLETMFSSEKPDTFAFTSWSNLGFYKVDFGWGTPQWI KDNMFIDRFNEGVPFLSAQISCRLSEFLKRQEIESLNKLLPCQPFCNESNNDAPLLVC QVTMFACGGIALGLCTSHKITDAKTGLILCNIWSEVSRGISHHNIGNPTLPEASLVFP PKNPMPQNYLSVMENLWFTEANYVTRRFTFDAKAIAKLKAMAKGESEARPTRTEAVSG FIWKCSMAASRATSGSLKPSIIAQAVNMRARGKPNSLDDSIGNVFWWASAHSNPAETG TELSELVDLMKQSIEAFDDEYLSSVQGEQGFQAIAEYINQLEMLFSFEKPDIFAFTSW LNLGFYKADFGWGLPSSFALFGKVGPAFRNLTVFIETKCGKGIEAWITLDEERMLVLE KDPEFLKFASPCLKISSL" mobile_element complement(5161656..5161780) /note="source:scaffold_7_CACTA_0789 11594 11719" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5161781..5161791) /note="source:CACAO_M_E48452_F5_scaffold_6 14691 14782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5161835..5161941) /note="source:CACAO_M_E48452_F5_scaffold_6 14248 14354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5162488..5164627 /note="source:INTACT242_F12_scaffold_1-int 2421 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5162493..5164330) /note="source:INTACT745_F320_scaffold_4-int 6594 8437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5165355..5167483) /note="source:CACAO_M_S_E38315_F276_scaffold_4 19774 21943" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5167360..5168007 /note="source:INTACT458_F219_scaffold_7-int 2761 3222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5167495..5172783) /note="source:INTACT157_F155_scaffold_1-int 6227 11083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5173004..5175140 /note="source:INTACT61_F128_scaffold_2-int 8078 10205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5175109..5176793) /note="source:INTACT157_F155_scaffold_1-int 2404 4071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5175301..5178019) /note="source:CACAO_M_S_E38315_F276_scaffold_4 7291 9989" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5177997..5178314) /note="source:INTACT556_F252_scaffold_2-int 1 283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5178768..5179670) /note="source:scaffold_3_CACTA_0378 1585 2511" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5180440..5180521) /note="source:scaffold_1_CACTA_0011 7457 7533" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5180457..5180590 /note="source:scaffold_1_CACTA_0011 7466 7531" /mobile_element_type="transposon:TIR/CACTA" gene complement(5186491..5190248) /locus_tag="TCM_043315" /note="dbxref CacaoGD:Thecc1EG043315" mRNA complement(join(5186491..5187129,5187332..5187575, 5187790..5187909,5189525..5190248)) /locus_tag="TCM_043315" /product="Papain family cysteine protease" /inference="alignment:exonerate- protein:2:ricco:28462.m000130" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034140t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400054110" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2965t1" CDS complement(join(5186858..5187129,5187332..5187575, 5187790..5187909,5189525..5190037)) /locus_tag="TCM_043315" /note="paralog of Thecc1EG034140t1" /codon_start=1 /product="Papain family cysteine protease" /protein_id="EOY18822.1" /db_xref="Phytozome:PGSC0003DMP400054110" /db_xref="TAIR:AT3G54940.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P43296" /translation="MKGRQSPTLTCTTAIAALIFSLILSLCLALTEIPQEPTILQVTD NLIPTLNRKFSRNYVHKEFQVFVEKYGKNYSTTEEYMHRLGIFAKNLIRAAEHQVLDP TAVHGVTQFSDLSEEEFERLYTGVKGGMAAAAPRMMDGVGSEAEMVEVDGLPESFDWR EKGAVTEVKMQGACGSCWAFSTTGAIEGANFVATGKLLSLSEQQLVDCDQMCDIKDKT ACDNGCSGGLMTNAYKYLIESGGLQDENSYPYTGRREDCKFKPDKVAVKVVNFTKIPI DENQIAANLVIRGPLAVGLNAFFMQTYIGGVSCPIICGKRWINHGVLLVGYGAKGFSI LKFGYQPYWIIKNSWGKRWGEHGYYRLCRGHAMCGMNTMVSAVATKVY" mobile_element complement(5188704..5188780) /note="source:scaffold_2_CACTA_0256 18766 18846" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5191237..5191462) /note="source:scaffold_5_CACTA_0607 4617 4843" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5191463..5192259) /note="source:scaffold_5_CACTA_0607 4006 4828" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5192240..5193159 /note="source:CACAO_M_E48701_F73_scaffold_6 1 866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5193562..5194762) /note="source:CACAO_M_E69835_F73_scaffold_9 258 1458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5194867..5195115 /note="source:CACAO_M_E3336_F73_scaffold_1 7165 7392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5195116..5196334 /note="source:scaffold_9_CACTA_0934 13644 14868" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5205843..5209073 /note="source:INTACT1334F_F383_scaffold_8-int 2929 6169" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5209730..5212235 /locus_tag="TCM_043318" /note="dbxref CacaoGD:Thecc1EG043318" mRNA join(5209730..5210975,5211063..5212235) /locus_tag="TCM_043318" /product="Pseudouridine synthase" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g36350.1" /inference="similar to AA sequence:Phytozome:Glyma02g36350.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg2987t2" CDS join(5209825..5210975,5211063..5211435) /locus_tag="TCM_043318" /codon_start=1 /product="Pseudouridine synthase" /protein_id="EOY18823.1" /db_xref="Phytozome:Glyma02g36350.1" /db_xref="TAIR:AT1G20370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GQ56" /translation="MEIPDTPDTKIAKPPPPPPPTTQEPDPKRLKMSTTTTSDDEETA SATNGTKKQRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDR GNPKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGLVERLNRILPAQIRIFGYKRVTA SFNSKKFCDRRRYVYLIPVFALDPSCHRDRESVLASLGSGNELVKCLECSERGRKVAG VMGKRSFEAKSTIVHSDVSSNNGESGNVIKEHNLTSELEEVTDSSVQNEFTEVDKVNV EKIPLEERRFCYGEEEKGLFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIVSFHANT VVNVEGIDFVKCEVVGQSFMLHQIRKMIGMAVAVMRNCAPESLIETALRKDVSINVPT APEVGLYLDECLFASYNQKWKDSHEELSMKAYEEEAEEFKMKFIYSHIASTEREEGVV ALWLHSLNHRNYPDLRGCNVEMIEGMSLKVDDNTDNTDAKSASVEKNGDAEIQSAKD" gene 5212282..5270058 /locus_tag="TCM_043319" /note="dbxref CacaoGD:Thecc1EG043319" mRNA join(5212282..5212520,5259880..5261927,5270034..5270058) /locus_tag="TCM_043319" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022288t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03280.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage" mobile_element 5214352..5214443 /note="source:scaffold_5_CACTA_0607 6914 7004" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5220708..5220796) /note="source:INTACT566_F257_scaffold_7-int 635 740" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5221280..5222943 /note="source:CACAO_M_E44868_F328_scaffold_6 1 1665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5223095..5226007) /note="source:CACAO_M_S_E145491_F15_scaffold_10 1 2883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5226102..5227347 /note="source:CACAO_M_E35115_F328_scaffold_5 1941 3208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5227729..5230497) /note="source:INTACT566_F257_scaffold_7-int 1623 4396" /mobile_element_type="retrotransposon:LTR/Copia" gene <5234421..5239702 /locus_tag="TCM_043322" /note="dbxref CacaoGD:Thecc1EG043322" mRNA join(<5234421..5234802,5235263..5235472,5236564..5236669, 5238102..5238438,5238763..5239047,5239137..5239624) /locus_tag="TCM_043322" /product="ACT-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022280t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23520.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3009t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc383t12" CDS join(<5234421..5234802,5235263..5235472,5236564..5236669, 5238102..5238438,5238763..5239047,5239137..5239142) /locus_tag="TCM_043322" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022280t1" /codon_start=1 /product="ACT-like superfamily protein isoform 2" /protein_id="EOY18826.1" /db_xref="Phytozome:POPTR_0010s23520.1" /db_xref="TAIR:AT2G36840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C885" /translation="LPCVLFVFTLFDGNSSPFAAKLNNRNKKAKDKKIKLWREREKGE KTHLFGAKKYKKKQSKNRAREQSGEIVKEKRKMGILREDVIVISPAEKEEDSTVISVN CPDKTGLGCDLCRIILLFGLSIARGDGKWCYVVLWVVGKTNTRWDLLEKRLLEVCPSY FSTSGIDYYQPANQQPKPLDVFLLKFWCSCYRKGLLNDVTLVLFELELTIKKVKVSTT PDGKVMDLFFITDTRELLHTKERQGQTILHLKAALGDILESCEIESVGPEITACAQGT SFLPSAITEDMFSLELPARYPGGLLASNPISITVDNTLSPSHTLIQVLCQDHKGLIYD IMRTLKDYNIQVSYGRFFAKQNGGCEMDLFIVQADGKKIVDRNKQNALCSRLRMELWR PLRLAVVSRGPDTELLVANPVELSGRGRPLVFHDITLALKNLNTQIFSG" mRNA join(5234445..5234802,5235251..5235472,5236564..5236669, 5238102..5238438,5238763..5239047,5239138..5239702) /locus_tag="TCM_043322" /product="ACT-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022280t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23520.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc383t12" CDS join(5234649..5234802,5235251..5235472,5236564..5236669, 5238102..5238438,5238763..5239047,5239138..5239275) /locus_tag="TCM_043322" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022280t1" /codon_start=1 /product="ACT-like superfamily protein isoform 1" /protein_id="EOY18825.1" /db_xref="Phytozome:POPTR_0010s23520.1" /db_xref="TAIR:AT2G36840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C885" /translation="MGILREDVIVISPAEKEEDSTVISVNCPDKTGLGCDLCRIILLF GLSIARGDFSTDGKWCYVVLWVVGKTNTRWDLLEKRLLEVCPSYFSTSGIDYYQPANQ QPKPLDVFLLKFWCSCYRKGLLNDVTLVLFELELTIKKVKVSTTPDGKVMDLFFITDT RELLHTKERQGQTILHLKAALGDILESCEIESVGPEITACAQGTSFLPSAITEDMFSL ELPARYPGGLLASNPISITVDNTLSPSHTLIQVLCQDHKGLIYDIMRTLKDYNIQVSY GRFFAKQNGGCEMDLFIVQADGKKIVDRNKQNALCSRLRMELWRPLRLAVVSRGPDTE LLVANPVELSGRGRPLVFHDITLALKNLNTQIFSVEIGRHMIHDREWEVYRILLDEGD GYPVPRNKIEEGVRKILMGWE" gene 5240124..5245180 /locus_tag="TCM_043323" /note="dbxref CacaoGD:Thecc1EG043323" mRNA join(5240124..5241065,5241329..5241400,5241541..5241755, 5242227..5242377,5242486..5242677,5242936..5243098, 5243209..5243450,5243847..5244023,5244226..5244387, 5244715..5245180) /locus_tag="TCM_043323" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031707t1" /inference="similar to AA sequence:ricco:28462.m000128" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04421t00001" CDS join(5240592..5241065,5241329..5241400,5241541..5241755, 5242227..5242377,5242486..5242677,5242936..5243098, 5243209..5243450,5243847..5244023,5244226..5244387, 5244715..5245017) /locus_tag="TCM_043323" /note="dbxref ricco:28462.m000128; paralog of Thecc1EG031707t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY18827.1" /db_xref="TAIR:AT3G10420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J3R7" /translation="MRALNSRFVLIDITNNATSWHQRQKHSHFITRTRGAHRRAAAAS IKQSQPSVLRTPQIRKPSERTTFSNGSSLDYPNPASASTSTSTSRVEAPTELELFLEM LPLRMRRELCGHEEIGELIEVVLDLGRKPLARFPSGDWVISEQPVKHEDLRHAISKVE IQSLFLYVANMVSIFCMMITKLVGDFSDDNRSGIDRSLHRISAIRNRKLQIIGLTCRV GRAVSGSAEITRDLVEGGGSILVIGPPGVGKTTLIREIARMLADEHMKRVVIVDTSNE IGGDGDVPHDGIGRARRMQVPNVNMQHNVMIEAVENHMPETIIIDEIGTELEALAAST IAQRGVQLVGTAHGMTIDNIIKNPSLQILVGGIESVTLGDEEARKRKVQKTILERKGP PTFTCAVELISRTECRVHHRLDATVDAILAGKSALFEIRQMEAEANVSLKSTLMPKID HLEQSDFPVNKEKSAQVDFDDEDEDSLPKFIKKQRLNQSVSKRISPICVYTYKILEAD LLQVAAVMGLEDEIDVTDDIGMADAILASASEIKQNPWIRGIAKFHKLPMFVIKSNTM AQMVKAVRMILERESYGSRLEHPNKNSFDIEIEDDAPKRKPTLEEIDALEEVRLAIEY IVIPGGEPVELLPRRSEIIARQLELVKSYQLAAENSGTELNPRLQILPQRLNKKLSSK SLKSTTTVENETGLKPQTDSSGGTSVTRLPLLPE" gene 5245264..5251767 /locus_tag="TCM_043324" /note="dbxref CacaoGD:Thecc1EG043324" mRNA join(5245264..5245834,5245947..5246094,5249923..5250413, 5250681..5251767) /locus_tag="TCM_043324" /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23550.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23550.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05053t00001" mRNA join(5245763..5245834,5245947..5246094,5249923..5250380, 5250681..5251184) /locus_tag="TCM_043324" /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23550.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23550.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3114t1; inference alignment:Newbler:10:TSA:cgbaP1_g05053t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8266t21" CDS join(5245984..5246094,5249923..5250413,5250681..5250909) /locus_tag="TCM_043324" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 1" /protein_id="EOY18828.1" /db_xref="Phytozome:POPTR_0010s23550.1" /db_xref="TAIR:AT5G04280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWN5" /translation="MAGKEENRIFVGGLSWDVTERQLEHAFSRFGKILESQIMLERDT RRPRGFGFITFADRRSMDEAIREMHGREFGERIISVNKAQPKMGEDLDHGYRGYSSSG RGGYAGGDRPVGQDECFKCGRFGHWARDCPSAGGGGRGGSGGMFSSRSRYGGADDRGD RFRDRDRYVDDRYDGGRYGDRDRFDSRDDRYGSRDRYIGDRYPPSGDRFGDRYGGSDH FPQNGYGKERAFRDVASRSGDRYGSGGPARNDGRSYRNRGGPYDRPGRGGRPSSFDRY " CDS join(5245984..5246094,5249923..5250380,5250681..5250909) /locus_tag="TCM_043324" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA-binding family protein with retrovirus zinc finger-like domain isoform 2" /protein_id="EOY18829.1" /db_xref="Phytozome:POPTR_0010s23550.1" /db_xref="TAIR:AT5G04280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWN5" /translation="MAGKEENRIFVGGLSWDVTERQLEHAFSRFGKILESQIMLERDT RRPRGFGFITFADRRSMDEAIREMHGREFGERIISVNKAQPKMGEDLDHGYRGYSSSG RGGYAGGDRPVGQDECFKCGRFGHWARDCPSAGGGGRGGSGGMFSSRSRYGGADDRGD RFRDRDRYVDDRYDGGRYGDRDRFDSRDDRYPPSGDRFGDRYGGSDHFPQNGYGKERA FRDVASRSGDRYGSGGPARNDGRSYRNRGGPYDRPGRGGRPSSFDRY" gene 5247854..5249528 /locus_tag="TCM_043325" /note="dbxref CacaoGD:Thecc1EG043325" mRNA join(5247854..5248041,5248453..5249528) /locus_tag="TCM_043325" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.81 coverage" CDS join(5247962..5248041,5248453..5248675) /locus_tag="TCM_043325" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18830.1" /translation="MHDYAVFLEAKVMCFWMGLTSLFLLMCTASVWKIIDSALLCSTK LGAYSIAVTALSPSELITRAFSKSSACATQTAEVVRYCTQYMWPPAEPAFRFLILS" CDS 5259992..5261866 /locus_tag="TCM_043319" /note="paralog of Thecc1EG022288t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY18824.1" /db_xref="Phytozome:POPTR_0008s03280.1" /db_xref="TAIR:AT2G39210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80960" /translation="MVVAGPGGGGMPNMKSFGVQILTGPWLMVFGSLLIMSAAGATYM FSLYSNEIKKSLGYDQTTLNLLSFFKDLGTNVGVLSGLIAEVTPPWFVLSVGAVLNFF GYFMIWMAVSKRIARTQVWHMCLYICIGANSQSFANTGSLVTCVKNFPESRGVVLGIL KGYVGLSGAIITQLYHAFYGDDSKSLILLIGWLPAVISLCFVRTIRIMKVAHQANEVK VFYKFLYISLGLASFLMIIIIVEKKFLFTRPEYGGSAAMVLFLLFLPLGVVIMEEYKL WEAKNRALNDPSPLKIVTEKPSSEVSLENTEAHSSSSTAKILANNESSHDQANVSCWK TAFNPPNRGDDYTILQALFSLDMLILFLATTCGIGGTLTAIDNLGQIGTSLGYPKRSI STFVSLVSIWNYLGRVTAGFVSEIFLAKYKFPRPLMLTLIMLFSCVGHLLIAFGVPGG LYIASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYILNVKVAGNL YDREAKKQMAALGLKRKAGEDLDCNGVECFKLSFIIIAAATLFGTVVAFLLALRTRKF YKSDIYKKFREEAKATEMQMAAAGDGIVLPDVKATANGVSHPEGKATGNGIGPEAKVG " mobile_element complement(5266090..5269276) /note="source:CACAO_M_E85198_F328_scaffold_10 1 3187" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5269618..5270144) /note="source:INTACT257_F186_scaffold_6-int 18374 18867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5270410..5270643) /note="source:INTACT257_F186_scaffold_6-int 18039 18277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5270631..5270764) /note="source:INTACT257_F186_scaffold_6-int 18039 18165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5270752..5270870) /note="source:INTACT257_F186_scaffold_6-int 901 1022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5270891..5271392) /note="source:INTACT257_F186_scaffold_6-int 17149 17637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5277065..5277100) /note="source:CACAO_M_S_E64023_F13_scaffold_5 19649 19685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5277101..5278470 /note="source:CACAO_M_E34392_F323_scaffold_5 1 1366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5278571..5280523) /note="source:CACAO_M_E69275_F82_scaffold_9 1 1956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5280389..5280540) /note="source:CACAO_on_SS_E90_scaffold_6 3565 3717" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5281779..5281828) /note="source:CACAO_M_S_E122136_F76_scaffold_10 13648 13697" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5281933..5298211 /locus_tag="TCM_043326" /note="dbxref CacaoGD:Thecc1EG043326" mRNA join(5281933..5281963,5295997..5298211) /locus_tag="TCM_043326" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054135" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042155t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400054135" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc2060t1" CDS 5296218..5297993 /locus_tag="TCM_043326" /note="paralog of Thecc1EG042155t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY18831.1" /db_xref="Phytozome:PGSC0003DMP400054135" /db_xref="TAIR:AT2G28120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUV4" /translation="MVVTTTNNGGSGCGCCRFLCQVINGRWFMMFASFLIMAGAGATY LFGVYSKDIKATLGYDQSTLNLMSTFKDLGANVGVLSGLLAEVTPTWFVLLVGAVMNF AGYFMIWCAVTKKIPTPQVWHMCAYICIGANSQNFANTGSLVTCVKNFPESRGIMLGL MKGFVGLSGALFTQLYYAIYGNDSKSLILLIGWLPAAISLVFVYNIRIMKISRHPNEH KVFHEYLTISVILALLLMGLTIAQKKVTFPRIGYVLSAVVVCVMLFSPLAIAIREEYY TWKHRKQITTPTSIIVEATPPTETVSKSEIEPECTETEIVMKNQEDSCCTNICKRPKR GQDYTILQALTSADMLLLFVATFCGLGCSLTAVDNLGQIGESLGYPQLTISTFVSLLS IWNYFGRVFAGFVSEKILLKYKVPRPSIMAFALLLSAVGDLLIAFPWPGSVYPASLVL GFSYGAQLTLLFTIVSELFGLKYYSTLFNCSQLASPLGSYVLNVRVVGKLYDREALKQ LAAKGLTRSMVKELTCMGKQCYRLSFLILAAANFCAFFVTLILVARTRKYYRGDIYKR FRDEMEANEKEMALKQAQEIQEVKK" gene 5299462..5303549 /locus_tag="TCM_043327" /note="dbxref CacaoGD:Thecc1EG043327" mRNA join(5299462..5299520,5300169..5300230,5300359..5300410, 5300506..5300623,5301127..5301283,5301440..5301520, 5301638..5301745,5301835..5301906,5303090..5303146, 5303258..5303343,5303410..5303549) /locus_tag="TCM_043327" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s13570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042355t2" /inference="similar to AA sequence:Phytozome:POPTR_0002s13570.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4336t1" CDS join(5300204..5300230,5300359..5300410,5300506..5300623, 5301127..5301283,5301440..5301520,5301638..5301745, 5301835..5301906,5303090..5303104) /locus_tag="TCM_043327" /note="paralog of Thecc1EG042355t2" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY18832.1" /db_xref="Phytozome:POPTR_0002s13570.1" /db_xref="TAIR:AT5G26667.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PHR2" /translation="MGTADAASKDVTVRLAERKPIVVFVLGGPGSGKGTQCANIVQHF GYTHLSAGDLLRAECNSGSENGTMIQNMMNEGKIVPSEVTIELLQKAMLESGNNKFLI DGFPRNEENRAAFEAVTKIEPEFVLFFNCPQEEMERRILNRNQGREDDNIETIRKRFK VFEESSLPVIEYYKARGKVREIDAAKSIEEVFDALKVIFTTTVGKVVTT" gene 5311176..5325518 /locus_tag="TCM_043328" /note="dbxref CacaoGD:Thecc1EG043328" mRNA join(5311176..5311691,5313058..5313302,5313414..5313569, 5313665..5313823,5313910..5313993,5315195..5315262, 5315357..5315692,5315778..5315829,5315898..5316053, 5316154..5316297,5316377..5316479,5316578..5316727, 5316817..5316871,5316978..5317039,5318506..5318560, 5318716..5318743,5321552..5321612,5321706..5321801, 5321896..5324500,5324583..5325518) /locus_tag="TCM_043328" /product="Kow domain-containing transcription factor 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03270.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3090t1" CDS join(5311520..5311691,5313058..5313302,5313414..5313569, 5313665..5313823,5313910..5313993,5315195..5315262, 5315357..5315692,5315778..5315829,5315898..5316053, 5316154..5316297,5316377..5316479,5316578..5316727, 5316817..5316871,5316978..5317039,5318506..5318560, 5318716..5318743,5321552..5321612,5321706..5321801, 5321896..5324500,5324583..5324586) /locus_tag="TCM_043328" /codon_start=1 /product="Kow domain-containing transcription factor 1, putative" /protein_id="EOY18833.1" /db_xref="TAIR:AT5G04290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUL1" /translation="MSSKGKGKAKEVFSGKRKSSGAEESRRKRKNPGVLQFFEDAAGV DHNDASDDSDIDNYFMEEELDLNVNIEAGKTHNLPFVPKEEVIEEEFDKIMEERYKDG AGFVTYAEDSYEAKGSIDRNSALPSSKDPTIWKVKCVVGRERHSAFCLMQKFIDMRSL GNILQIISAFSVDHVKGFFYIEADRQCDINEACKGLTYIYSSRVAPVPSNEVYHLLSV RTKRSEVSEGMWARVKNGKYKGDLAQVVAVNNARKRATVKLIPRIDLQAMAAKFGGGV SIKRNVTPAPKLISSSELEEFRPLIQYRRDRDTGIGFQILDGMMLKDGYLYKRVSIDS LSCWGVMPTKEELLKFSHSDNNESDDLEWLSQLYGEKKRKKNIKIDKGGEKGEGSMGS GMENSFDLHDLVCFGRKDFGLIVGMEKDDHYKILKETLEGPVVVTIGQHELKSGPLDT KFTALDQHSKTISINDTVKVLEGQHEGKQGMVKQIYRGTIFLYDENETDNGGFFCCKS QMCEKVKQYFDACNEKGGEPGTSGFGDFMSSPKSPLSPKKPWQERETRSDFNRGNRDG MFSIGQTLRIRVGPLKGYLCRVLAVHYSDVTVKLDSKQKVLTVKNEHLAEVQGKSYAA NTSEHDGSNSFKPFELGTEGSSRDWLDRAGTSAEDGGSNGERSSLYVIPGKHQAEPNH SNLFGSEDTDLKKDGEDSAWGCKVTSNQNASWGAAVCSGDNDKKTDDACTALENKATT KQNSAWATGGSDQVGNWDSWNKAAAKTDSGSGASDAWGKAITSSGDPSGASKDVGGSW GQAKLKIGNPADSSNITSWEKDKNMNVGDDSWKKSESWDKGKNVTQNLSGVWDNAAAK KNQLNLWGKGKDVVEAGSWEKNGNSSVRQGHWNNNALGSNQRESWGKKNDAGGSEDNT WGKAAEKWSNKDDSGGSKGNWGSSTLAAENAKGGWGSAGACLTKPEAVSTDESSGWKK ANDFSGNQTTNWDCKKDASECATGWTKGGSHESDGWNKGKVADGGTSWGKHDGGEQLG GSSWGEQPLGNAENDSKGWKNQNDGWNKPRSSGRDQGSGGWDKGKMESKDGKAPQGSG WGKGGNWNSNSDGASRGSNWARKADPHVGSGEATQDSRWGKKSDWNSGSGDMNQDSNW GKKSSWDAGLNSGSGGTNQDPSWAKMESKDGTALQGSGWDKGGNWNSNSGGASQGSNW ARKTDPHVGSGEATQDSIWGKKSDWNSGSGDMNQDSNWGKKSSWDAGWNSGSGSANQD PSWAKKNDLDFGSGDATKGSGWGKKSDWNSGSGDANQDSGWKKRSDWNSGNGNEDQNV TFSSRGSGGNWRGGFGGRDSSGRGFRGRGNADRGGFRGRGRSDRGGFRGGGDGGYGGR SGDRGGFGGRGRGRRDQNGGWNNGDSGEDKSFSWNKEANNSEGWKSNDEVKCNQGWNG RTGPGDKAKTWNQSNADQGGQSSIWNQSNDVKQGGWNKGTGSTNEADGSEDNNWKSSS SSARTKCSSWNHPTGSKEINEGNNQGPGSAGGSDNQGSGWNRGAGSGDQARTWNQSNA ADGGPSSGWNESKDAEETSGNRDSWGKAASSSWEQGSGSSKGGC" gene complement(5325347..5334051) /locus_tag="TCM_043329" /note="dbxref CacaoGD:Thecc1EG043329" mRNA complement(join(5325347..5325441,5326171..5326951, 5330074..5330279,5331173..5331389,5331540..5332220, 5332696..5334051)) /locus_tag="TCM_043329" /product="Pectin lyase-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022294t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016208001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:PASA:2:TSA:puevd3b041808t1a2; alternateUTRof:Thecc1EG043329t1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9375t13" mRNA complement(join(5325664..5326951,5330074..5330279, 5331173..5331389,5331540..5332220,5332696..5332764, 5333214..>5333239)) /locus_tag="TCM_043329" /product="Pectin lyase-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022294t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016208001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9375t13; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9375t13" mRNA complement(join(5326097..5326614,5326668..5326951, 5330074..5330279,5331173..5331389,5331540..5332220, 5332696..5333040)) /locus_tag="TCM_043329" /product="Pectin lyase-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022294t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016208001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9375t13" CDS complement(join(5326705..5326951,5330074..5330279, 5331173..5331389,5331540..5332220,5332696..5332764, 5333214..>5333239)) /locus_tag="TCM_043329" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022294t2" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 3" /protein_id="EOY18836.1" /db_xref="Phytozome:GSVIVT01016208001" /db_xref="TAIR:AT5G04310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E7BTN3" /translation="GEKERVRRRAAFNLSLPHQHPDPESVVQDVQRRLNVSLSRRQAL SVTQKDQCRTGNPIDDCWRCDPNWYNNRQHLADCSIGFAQGTLGGKGGRIYTVTDSSD SNPANPKPGTLRHAVIQNEPLWIIFSTNMVIKLKHELIFNSYKTVDGRGANVHVTGNG CITLQYVSHVIIHNIHVHHCKPSGNTDIASSPTHVGWRGRSDGDGISIFSSQKLWIDH CSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDRYLPDSGMQVTIAFNHFG QGLVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTAPGDPNAKEVTK RVDTNEKDWTDWNWRTEGDLLVNGAYFVPSGAGLSAQYAKASSVEPKSAALIEQLTFN AGVFGEAREETGSFSYPGYSSGGSSSTSTGSARSGDDGDYFGMIFGSGSPLPPASTSI ASIFLSLLIILVLYSITNQGALPSLLSLLLL" CDS complement(join(5326705..5326951,5330074..5330279, 5331173..5331389,5331540..5332220,5332696..5332826)) /locus_tag="TCM_043329" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022294t2" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 1" /protein_id="EOY18834.1" /db_xref="Phytozome:GSVIVT01016208001" /db_xref="TAIR:AT5G04310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E7BTN3" /translation="MLPLTCILLICTLGSVSSIARAAFNLSLPHQHPDPESVVQDVQR RLNVSLSRRQALSVTQKDQCRTGNPIDDCWRCDPNWYNNRQHLADCSIGFAQGTLGGK GGRIYTVTDSSDSNPANPKPGTLRHAVIQNEPLWIIFSTNMVIKLKHELIFNSYKTVD GRGANVHVTGNGCITLQYVSHVIIHNIHVHHCKPSGNTDIASSPTHVGWRGRSDGDGI SIFSSQKLWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDRYLPDS GMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYT APGDPNAKEVTKRVDTNEKDWTDWNWRTEGDLLVNGAYFVPSGAGLSAQYAKASSVEP KSAALIEQLTFNAGVFGEAREETGSFSYPGYSSGGSSSTSTGSARSGDDGDYFGMIFG SGSPLPPASTSIASIFLSLLIILVLYSITNQGALPSLLSLLLL" CDS complement(join(5326705..5326951,5330074..5330279, 5331173..5331389,5331540..5332220,5332696..5332826)) /locus_tag="TCM_043329" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022294t2" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 1" /protein_id="EOY18835.1" /db_xref="Phytozome:GSVIVT01016208001" /db_xref="TAIR:AT5G04310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E7BTN3" /translation="MLPLTCILLICTLGSVSSIARAAFNLSLPHQHPDPESVVQDVQR RLNVSLSRRQALSVTQKDQCRTGNPIDDCWRCDPNWYNNRQHLADCSIGFAQGTLGGK GGRIYTVTDSSDSNPANPKPGTLRHAVIQNEPLWIIFSTNMVIKLKHELIFNSYKTVD GRGANVHVTGNGCITLQYVSHVIIHNIHVHHCKPSGNTDIASSPTHVGWRGRSDGDGI SIFSSQKLWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDRYLPDS GMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYT APGDPNAKEVTKRVDTNEKDWTDWNWRTEGDLLVNGAYFVPSGAGLSAQYAKASSVEP KSAALIEQLTFNAGVFGEAREETGSFSYPGYSSGGSSSTSTGSARSGDDGDYFGMIFG SGSPLPPASTSIASIFLSLLIILVLYSITNQGALPSLLSLLLL" mobile_element 5334970..5335535 /note="source:scaffold_1_CACTA_0008 948 1531" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5338177..5338418) /note="source:INTACT383F_F354_scaffold_3-int 871 1109" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(5338598..5338725) /note="source:MITE_Unknow_3_1 349 477" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(5338723..5338943) /note="source:CACAO_MITE_S205_scaffold_9 2 237" /mobile_element_type="transposon:TIR/MITE" mobile_element 5339526..5339678 /note="source:scaffold_5_CACTA_0580 5385 5535" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5340235..5340358) /note="source:scaffold_7_CACTA_0795 2862 2989" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5341406..5341522 /note="source:scaffold_7_CACTA_0795 2848 2970" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5343541..5343581) /note="source:scaffold_4_CACTA_0483 2565 2605" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5345791..5346027 /note="source:CACAO_on_E683_scaffold_9 2070 2302" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5346140..5346259 /note="source:scaffold_8_CACTA_0855 1990 2152" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5346260..5346350 /note="source:CACAO_PIF_E54_scaffold_3 8894 8983" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5346351..5346381 /note="source:scaffold_8_CACTA_0855 2153 2197" /mobile_element_type="transposon:TIR/CACTA" gene complement(5347553..5348611) /locus_tag="TCM_043331" /note="dbxref CacaoGD:Thecc1EG043331" mRNA complement(5347553..5348611) /locus_tag="TCM_043331" /product="Polynucleotidyl transferase, putative" /inference="alignment:exonerate-protein:2:frave:gene15986" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041300t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s18510.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1399t1" CDS complement(5347806..5348564) /locus_tag="TCM_043331" /note="paralog of Thecc1EG041300t1" /codon_start=1 /product="Polynucleotidyl transferase, putative" /protein_id="EOY18837.1" /db_xref="Phytozome:POPTR_0003s18510.1" /db_xref="TAIR:AT5G22250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXN2" /translation="MTVPSKKPVMVRQVFAEDLEREFAIIHSVIDRYSFVSMDTEFPG TIFKPDKQLVDITDPSFNYLFMRSNVNALHIIQLGLTLSDSQGNLPDFDTPYCYIWEF NFKDFDFEKNYYDKKSVKLLKAQGIDFVKNREKGIDSRDFRRMVLNSKLVFNRSGLTW ITFHSAYDFGFLVKILTQQELPYHVNSFTKQLIYFFGYKIYDIKHAFKYFGLHGGLER VAKLLNVARVAGESHQAGSDSLLTLQCFMELKQS" mobile_element 5349634..5349692 /note="source:scaffold_9_CACTA_0943 9071 9129" /mobile_element_type="transposon:TIR/CACTA" gene 5349649..5352839 /locus_tag="TCM_043332" /note="dbxref CacaoGD:Thecc1EG043332" mRNA join(5349649..5349763,5350340..5350518,5350629..5350666, 5350793..5350901,5351014..5351037,5351143..5351205, 5351292..5351333,5351424..5351592,5351679..5351730, 5351857..5352048,5352168..5352839) /locus_tag="TCM_043332" /product="Shugoshin C terminus, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031478001.2" /inference="similar to AA sequence:Phytozome:POPTR_0010s23580.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3024t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3024t3" mRNA join(5349649..5349763,5350340..5350518,5350629..5350666, 5350793..5350901,5351014..5351037,5351143..5351205, 5351292..5351333,5351424..5351592,5351679..5351730, 5351860..5352048,5352168..5352839) /locus_tag="TCM_043332" /product="Shugoshin C terminus, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031478001.2" /inference="similar to AA sequence:Phytozome:POPTR_0010s23580.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3024t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3024t3; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8374t6" mRNA join(<5349666..5349763,5350340..5350518,5350629..5350666, 5350793..5350901,5351014..5351037,5351143..5351205, 5351292..5351592,5351679..5351730,5351857..5352048, 5352168..>5352337) /locus_tag="TCM_043332" /product="Shugoshin C terminus, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031478001.2" /inference="similar to AA sequence:Phytozome:GSVIVT01016210001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8374t3; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8374t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3024t3" mRNA join(5349666..5349763,5350340..5350518,5350629..5350666, 5350798..5350901,5351014..5351037,5351143..5351205, 5351292..5351333,5351424..5351592,5351679..5351730, 5351857..5352048,5352168..>5352337) /locus_tag="TCM_043332" /product="Shugoshin C terminus, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031478001.2" /inference="similar to AA sequence:Phytozome:POPTR_0010s23580.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8374t2; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8374t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3024t3" CDS join(<5349667..5349763,5350340..5350518,5350629..5350666, 5350793..5350901,5351014..5351037,5351143..5351205, 5351292..5351592,5351679..5351730,5351857..5352048, 5352168..>5352336) /locus_tag="TCM_043332" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Shugoshin C terminus, putative isoform 4" /protein_id="EOY18841.1" /db_xref="Phytozome:GSVIVT01016210001" /db_xref="TAIR:AT5G04320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TM48" /translation="REREREIERVGFSSVLATEKLTILDTEIGVVSGKELRGEDMENQ SSIGNAPRKGLSDITNLQQQPIVVSQGAKLLLQPASLRSKDYIDKLQKENMMLMKVLA DRNKVMELSGIELQKLRTNLEKFQQQNLLLAQANSQMLAELNSGKDRLKALKHELGCK NAVLKAIKTEKKAQNKACLTSENEVLKRITSTIWIDFCFKHPMLSTLFLFHGLKVRTN RCDKEGESLKEEDGEDETCNMNRCNKAGGSLIEEDGENKPCNRNQRRQSKSLCPSNIK PVQAKEGVVNKSRVCLRRQSTGFKDQKPELTEDAFVDDAKFLVSSSCDDKVHESGLIS SDSSVKKEHEEGSTDNKRVCLRRQSARFKTQEPELTADVFDLDDTAFLVSSCDDKVHE SGPTSSHSSVKKEHEE" CDS join(5350363..5350518,5350629..5350666,5350793..5350901, 5351014..5351037,5351143..5351205,5351292..5351333, 5351424..5351592,5351679..5351730,5351857..5352048, 5352168..5352471) /locus_tag="TCM_043332" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Shugoshin C terminus, putative isoform 1" /protein_id="EOY18838.1" /db_xref="Phytozome:POPTR_0010s23580.1" /db_xref="TAIR:AT5G04320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUL3" /translation="MENQSSIGNAPRKGLSDITNLQQQPIVVSQGAKLLLQPASLRSK DYIDKLQKENMMLMKVLADRNKVMELSGIELQKLRTNLEKFQQQNLLLAQANSQMLAE LNSGKDRLKALKHELGCKNAVLKAIKTEKKAQNKACLTSENEVRTNRCDKEGESLKEE DGEDETCNMNRCNKAGGSLIEEDGENKPCNRNQRRQSKSLCPSNIKPVQAKEGVVNKS RVCLRRQSTGFKDQKPELTEDAFVDDAKFLVSSSCDDKVHESGLISSDSSVKKEHEEG STDNKRVCLRRQSARFKTQEPELTADVFDLDDTAFLVSSCDDKVHESGPTSSHSSVKK EHEEGSITPRNEAQELRRISVGRPLRRAVEKVQSYKEIPVNVKMRREE" CDS join(5350363..5350518,5350629..5350666,5350793..5350901, 5351014..5351037,5351143..5351205,5351292..5351333, 5351424..5351592,5351679..5351730,5351860..5352048, 5352168..5352471) /locus_tag="TCM_043332" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Shugoshin C terminus, putative isoform 2" /protein_id="EOY18839.1" /db_xref="Phytozome:POPTR_0010s23580.1" /db_xref="TAIR:AT5G04320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUL3" /translation="MENQSSIGNAPRKGLSDITNLQQQPIVVSQGAKLLLQPASLRSK DYIDKLQKENMMLMKVLADRNKVMELSGIELQKLRTNLEKFQQQNLLLAQANSQMLAE LNSGKDRLKALKHELGCKNAVLKAIKTEKKAQNKACLTSENEVRTNRCDKEGESLKEE DGEDETCNMNRCNKAGGSLIEEDGENKPCNRNQRRQSKSLCPSNIKPVQAKEGVVNKR VCLRRQSTGFKDQKPELTEDAFVDDAKFLVSSSCDDKVHESGLISSDSSVKKEHEEGS TDNKRVCLRRQSARFKTQEPELTADVFDLDDTAFLVSSCDDKVHESGPTSSHSSVKKE HEEGSITPRNEAQELRRISVGRPLRRAVEKVQSYKEIPVNVKMRREE" CDS join(5350800..5350901,5351014..5351037,5351143..5351205, 5351292..5351333,5351424..5351592,5351679..5351730, 5351857..5352048,5352168..>5352336) /locus_tag="TCM_043332" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Shugoshin C terminus, putative isoform 3" /protein_id="EOY18840.1" /db_xref="Phytozome:POPTR_0010s23580.1" /db_xref="TAIR:AT5G04320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUL3" /translation="MELSGIELQKLRTNLEKFQQQNLLLAQANSQMLAELNSGKDRLK ALKHELGCKNAVLKAIKTEKKAQNKACLTSENEVRTNRCDKEGESLKEEDGEDETCNM NRCNKAGGSLIEEDGENKPCNRNQRRQSKSLCPSNIKPVQAKEGVVNKSRVCLRRQST GFKDQKPELTEDAFVDDAKFLVSSSCDDKVHESGLISSDSSVKKEHEEGSTDNKRVCL RRQSARFKTQEPELTADVFDLDDTAFLVSSCDDKVHESGPTSSHSSVKKEHEE" mobile_element 5355122..5355230 /note="source:scaffold_8_CACTA_0854 47 156" /mobile_element_type="transposon:TIR/CACTA" gene 5358286..5359695 /locus_tag="TCM_043333" /note="dbxref CacaoGD:Thecc1EG043333" mRNA join(5358286..5358513,5358638..5359695) /locus_tag="TCM_043333" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042158t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23590.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3032t2" CDS join(5358463..5358513,5358638..5359366) /locus_tag="TCM_043333" /note="paralog of Thecc1EG042158t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18842.1" /db_xref="Phytozome:POPTR_0010s23590.1" /db_xref="TAIR:AT5G22930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL74" /translation="MEDQCSPLSWGYCYQEEGMEELKHTLLYTTLELETTLISAKEEI TRREFELIHLKDVLSRTIKERDEAQARCQKLMLEKFILQQQLQQKEQLQQQHQQETAS LSGVSSSEDESKPGHSNKNLSSSDSNRSIISSPVSDSIPHPVHPPSQPQSPLPQEALK LAANKRLPEKGKLLQAVKDAGPLLQNLLLAGPLPQWQHPPPQLTSIDIPPVAISSPTQ HLIHQDSFNNLNGCLSKKRGAENYEGSEPSPNNKYQKVVLH" mobile_element 5363982..5364136 /note="source:INTACT488_F227_scaffold_9-int 164 349" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5364142..5365345 /note="source:CACAO_hAT_E1967_scaffold_5 1 1161" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(5364969..5365411) /note="source:CACAO_on_E13_scaffold_3 104 553" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(5365489..5365623) /note="source:CACAO_hAT_E490_scaffold_1 1 133" /mobile_element_type="transposon:TIR/hAT" mobile_element 5367955..5368455 /note="source:INTACT1604F_F75_scaffold_10-int 3296 3810" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5368474..5368733 /note="source:INTACT1604F_F75_scaffold_10-int 3909 4214" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5368765..5370174 /note="source:INTACT1604F_F75_scaffold_10-int 4122 5572" /mobile_element_type="retrotransposon:LTR/Copia" gene 5369867..5373477 /locus_tag="TCM_043336" /note="dbxref CacaoGD:Thecc1EG043336" mRNA join(5369867..5370121,5370740..5370866,5371020..5371133, 5371438..5371543,5372215..5372324,5372997..5373264, 5373336..5373477) /locus_tag="TCM_043336" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039818" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029744t2" /inference="similar to AA sequence:ricco:29900.m001585" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3022t2" CDS join(5370768..5370866,5371020..5371133,5371438..5371543, 5372215..5372270) /locus_tag="TCM_043336" /note="dbxref ricco:29900.m001585; paralog of Thecc1EG029744t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18843.1" /translation="MRPKIYLFGDSITEESFRDGGWGASLANLISGTVDVVLRGYSGY NSRWALKVLFPAAESGGSDGASPPPLAGAMDFGLVGQAAIVAGKWACEYPKSKEIEPD KAWEGSSEEAECGRLKPGKANS" gene complement(5374656..5375010) /locus_tag="TCM_043337" /note="dbxref CacaoGD:Thecc1EG043337" mRNA complement(5374656..5375010) /locus_tag="TCM_043337" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029745t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage" CDS complement(5374700..5374939) /locus_tag="TCM_043337" /note="paralog of Thecc1EG029745t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18844.1" /translation="MPNSTIMQASLVILLILSANAVDIEAKSHAGRKTMKKRINSQSI IHALAGYDLSATKQGRRVMTDTSRISPGGPDPQHN" gene complement(5376380..5378381) /locus_tag="TCM_043338" /note="dbxref CacaoGD:Thecc1EG043338" mRNA complement(join(5376380..5377240,5377686..5377881, 5377975..5378381)) /locus_tag="TCM_043338" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage" CDS complement(join(5377087..5377240,5377686..5377881, 5377975..5378347)) /locus_tag="TCM_043338" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18845.1" /translation="MSFSRCLVCLTLLLLLSAGSQSRLLIEKRNLNNSMEDLRQYLNE EAEKIQNGQLERTSPGGPDPQHHFINNYHLLHVDFIFCYLSLSLSLSLEYGENNIKMC VDLRQYLNGEAKKNQNGQVERTGLASISFFMWILFLVTSPPPPLSLSLSSLFSLEYGE NNIKMWVSLENGGKCQIPVRYEKSSSRRTLGLLFSACAANCILSSLLSFVSVQGYVST KANFLMSRGVFYHFGSRLVTAF" mobile_element 5378621..5379820 /note="source:CACAO_hAT_E1967_scaffold_5 1 1161" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(5379442..5379886) /note="source:CACAO_on_E13_scaffold_3 104 553" /mobile_element_type="transposon:TIR/hAT" mobile_element 5379964..5380118 /note="source:CACAO_hAT_E386_scaffold_1 860 1013" /mobile_element_type="transposon:TIR/hAT" gene complement(5381266..5388421) /locus_tag="TCM_043339" /note="dbxref CacaoGD:Thecc1EG043339" mRNA complement(join(5381266..5384103,5388382..5388421)) /locus_tag="TCM_043339" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(5381805..5383973) /locus_tag="TCM_043339" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY18846.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT5G45730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MLLLSQSCTGFSYSCDLCEHEICPRCVSIPNPHQHPGHKDELTF SDISFEGKCAACGDGIYHEKAYRCTDCIHYGLDLKCLTLPLAARHRCDKHILKLVYYD ENDDLERPHCDICGERRLLNHWFYRCSICNNSAHPKCALGKYPFIKDGSTLSHKNHPH PLITVKKVSNLKSDECFECGDSCQDLAFWCETCCSHAHLECLNTKTLKTERNPDELQK EINHPCHRMHPLSLKFHNKYNFCEICKNKERGYFYGCSPCNFGIHIDCAFPSLVIENK THEHPFNLFWRQGSFICDACGTEGNYASYICSTCHLQVHKKCTSLPRIIKTAMHYDHP IFHNYFVRESDLDQKHECRVCYKEVKKEHGCYSCWRQDCKYIVHVNCAIVEDMHWIID SENQDEPSDNSVTDSSITRVIEVNESGEAEKIEHFSHGHDLMLGDKIREEDDKCCDGC VLSISGLFYYCSQCDFFLHKTCAELPRKKHHWFHKHHTTLESIATFLLKIEATESPCI FECRFCLHVCSGFFYCCSDCDLKVCLRCASIPHAHQHSGHKDHIFLNSEYKGKCTACG CGIYHGNAYKCKDCTDIYALDYACLTLPLAARHKCDKHILKLVYHDENDDPEQHYCDI CEEKRDPNYWFYLCSICDNSAHPKCVLGKYPFIKIGSTYLNEDQEPRLTFTKKIGYYP KCFECGKPCLDLTLESANSVCYHFNCVLKNYSKYVRERML" mobile_element 5385125..5385169 /note="source:scaffold_6_CACTA_0699 2709 2752" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5385374..5385458 /note="source:scaffold_6_CACTA_0699 2754 2839" /mobile_element_type="transposon:TIR/CACTA" gene complement(5388618..5390130) /locus_tag="TCM_043340" /note="dbxref CacaoGD:Thecc1EG043340" mRNA complement(join(5388618..5389365,5389997..5390130)) /locus_tag="TCM_043340" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT4G09690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043926t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc532t32_C1" CDS complement(join(5388900..5389365,5389997..5390010)) /locus_tag="TCM_043340" /note="paralog of Thecc1EG043926t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18847.1" /translation="MPGTSQEKDIVKQECKICYHEVKREYGCYCCLKQDCSYIVHVTC ATEDEDLYYIVDSENQDEPIESSIGCSITCVIEVNECGEATKINHFSHEHYLILEDKI EEDDDKHCDGCMLSILDSFYYCLQCDFLFPKTCAELPMKKYYWFNLHLQNLKSNRIF" gene 5390242..5408760 /locus_tag="TCM_043341" /note="dbxref CacaoGD:Thecc1EG043341" mRNA join(5390242..5390904,5391410..5391551,5391673..5391725, 5391922..5392030,5392590..5392726,5392817..5393016, 5393184..5393333,5393849..5393909,5394711..5394831, 5395496..5395586,5395674..5395767,5395926..5396021, 5396110..5396250,5396468..5396518,5397053..5397123, 5398813..5398905,5400035..5400125,5401241..5401312, 5401993..5402049,5402716..5402784,5404243..5404299, 5404409..5404483,5405166..5405254,5405503..5405580, 5405740..5405878,5406992..5407101,5407207..5407306, 5407813..5408760) /locus_tag="TCM_043341" /product="Limit dextrinase" /inference="alignment:exonerate- protein:2:ricco:29475.m000230" /inference="similar to AA sequence:Phytozome:GSVIVT01016183001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3102t4" CDS join(5390683..5390904,5391410..5391551,5391673..5391725, 5391922..5392030,5392590..5392726,5392817..5393016, 5393184..5393333,5393849..5393909,5394711..5394831, 5395496..5395586,5395674..5395767,5395926..5396021, 5396110..5396250,5396468..5396518,5397053..5397123, 5398813..5398905,5400035..5400125,5401241..5401312, 5401993..5402049,5402716..5402784,5404243..5404299, 5404409..5404483,5405166..5405254,5405503..5405580, 5405740..5405878,5406992..5407101,5407207..5407306, 5407813..5407941) /locus_tag="TCM_043341" /codon_start=1 /product="Limit dextrinase" /protein_id="EOY18848.1" /db_xref="Phytozome:GSVIVT01016183001" /db_xref="TAIR:AT5G04360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GTR4" /translation="MFDVLSLPLSLLPSTPPATPAKPLHCPATTRIRRRLYTKPNPLL SRPFSFTSFPKLPLNCSSSSMPFQVSSSSQLQDSLLYSRAYWVSKTIIAWNVDVGDGS CYLYASKVAALSVTDDGIQGQDAEIKLEEDRNGLPPNVIEKFPHIQNYRAFKVPPALD AKNLLKCQLAVAAFNSHGKCSNATGLQLPGILDELFSYDGPLGAHYLGEVVSLYLWAP TAQAVHAHIYKDPMGGSPLEIIQLVETNGVWSTKGPKRWEGCYYVYEVSVYHPSTLQI EKCYANDPYARGLSSDGRRTLFVNLDSNGLKPEGWDELADKKPDILSFSDISIYELHI RDFSANDNTVNPDFCGGYMAFTLQDSAGVLHLKKLSNAGITHVHLLPTFQFAGVDDES ENWKYVDYKILKKLPPDSAGQQAQITAIQNDDAYNWGYNPVLWGVPKGSYASDPNGPC RIIEFRKMIQALNHIGLRIVLDVVYNHLHASGPFDKDSVLDKIVPGYHLRRNNDGFIE NSTCVNNTASEHYMVERLIIDDLLSWSINYKVDGFRFDLMGHIMKSTMVKAKDALWSL TKERNGVDGSRIYIYGEGWDFGEVAENGRGINASQFNICGTGIGSFDDRIRDAMLGGS PFGHPLQQGFITGLFLEPNGHDHGTKAVERAMLASAKDHIQVGMAANLRDFVLTDFEG KERKGSEVFTYGGTPVAYALCPTETVNYVSAHDNETLFDIVSLKTPVEISVEERCRIN HFATSIIALSQGIPFFHAGDEMLRSKSLDRDSYNSGDWFNRLDFTYHSNNWGVGLPPK EKNEKNWPLIQPRLADPSFKPQRSHILAAVENFMNVLRIRYSSPLFRLRTANAIQQRV RFHNTGPSWVPGLIVMSIEDGNEGVPGISQLDPNFSYIVVIFNACPTEASFISSTLRG RTLQLHPIQVMSTDEVVKNSSYEALSGCFTVPARTTSVFVEARKNLNSLWC" mobile_element 5407103..5407179 /note="source:CACAO_M_S_E7994_F98_scaffold_2 2036 2107" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5408505..5411134) /locus_tag="TCM_043345" /note="dbxref CacaoGD:Thecc1EG043345" mRNA complement(5408505..5411134) /locus_tag="TCM_043345" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043923t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1155t1" CDS complement(5409044..5411089) /locus_tag="TCM_043345" /note="paralog of Thecc1EG043923t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18849.1" /db_xref="Phytozome:POPTR_0016s05820.1" /translation="MEKEKERERMENIRHFSHPHELVFNDEEQSDQSKVPCSACLESL LGRPSFGCGECEFYLHKKCAEAPLEISHSPFHRKHPTFTLKLNSLSCHMCKEHRLMFN YCCTSCPASLDIKCALRLHNIDEDFSELRYVSHEHPLAFIANPEDELQKADCHWCQKP VIDSLYVCLECRFFLHKQCAQLPTQLDHPCHRKHLLYIEDDCLVCTQCEKDHWSLFYS CLPCNLHIGIDCVRSKPRSFIEVSTDHEHSFTPLLRHDPFVCDACGTEGNYFSYICTT CYVMVHKKCTSLPRIINITRHHHCIFHNYYFQKKDLESRDCGICLTEVKIEYGNYKCL KQDCNFVAHVNCALEEGMYDIIDHVNDQDKECSERFATNSAITRVIEMNQHGEATKIK HCSHEHDLTLGNEIKKDDGKNCDACMLSISTSFFYCPECEFLLHKTCAELSKKKHLWF HRYPTTLDLADIVTCNQCYRVCSGFVYKSDKWSGTNFCLRCATIPHIFKCQGHKHSLF FDFKFEGRCNACGVTGYNGAFKCKDCTTFALDFACVTLPPEIRYKCDTHFLELTFHDE NDDPEQHYCDICEEKRNPNHWFYQCAICNSSVHPKCVLEKYPFMKIKIGITFPYRVCP HYHALIFVKKSYDTCSLCCQPCQDVALECVVCTPNCTIHYDCGVGELVSFLIKRRCS" mobile_element complement(5414157..5421971) /note="source:INTACT622_F276_scaffold_7-int 1 7628" /mobile_element_type="retrotransposon:LTR/Copia" gene 5424402..5429178 /locus_tag="TCM_043348" /note="dbxref CacaoGD:Thecc1EG043348" mRNA join(5424402..5424872,5425079..5425187,5425659..5425746, 5426107..5426164,5428262..5429178) /locus_tag="TCM_043348" /product="Uncharacterized protein" /note="quality class is weak, express is medium, homology is ortholog weak, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.43 coverage" CDS join(5426114..5426164,5428262..5428585) /locus_tag="TCM_043348" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18850.1" /translation="MESRLAMFKKGNTHLEVATRLSNFLGRKVIKLKTRHVTKNPNVQ GLWKTDLKARCSSICGKLVVVSMLGKIKLNTVLFSIATATILLLEDYDDLMVHAFPGY MGSDPYQTQRHFYWVAHPMDLQ" mobile_element complement(5429277..5429329) /note="source:INTACT498_F231_scaffold_5-int 8426 8475" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5436543..5438119 /locus_tag="TCM_043349" /note="dbxref CacaoGD:Thecc1EG043349" mRNA 5436543..5438119 /locus_tag="TCM_043349" /product="C2H2-type zinc finger family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g33480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022299t1" /inference="similar to AA sequence:Phytozome:Glyma20g33480.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3050t1" CDS 5436633..5437616 /locus_tag="TCM_043349" /note="paralog of Thecc1EG022299t1" /codon_start=1 /product="C2H2-type zinc finger family protein, putative" /protein_id="EOY18851.1" /db_xref="Phytozome:Glyma20g33480.1" /db_xref="TAIR:AT5G04390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUL6" /translation="MEAPEEVAMGSKDHSNIVKGKRTKRLRPQSPIPFAITSNSIHNE DEGEFDGNSANVDNKNVTLLSPSSSSSSSEYQDSTEEEEDMANCLILLAQGQSRQSTK QADDHDHHTGTDNKFTSRKFMEAPSNGTGKAGYYVYECKTCNRTFPSFQALGGHRASH KKPKTAAMVDEKTRQFTAAASDEEGQFIRTNNLSSLSLQLTNNNNNNRGLYSNNNKAK VHECSICGAEFTSGQALGGHMRRHRGPIGGSIPTASTALSLTVPVAMESEQPKKPRNV LSLDLDLNLPAPEDDHRESKFPFASKQQQQQQQQQQSPLVFSAPTLVDCHY" mobile_element 5442716..5443209 /note="source:CACAO_M_E801_F96_scaffold_1 1 494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5447933..5448287) /note="source:INTACT93F_F345_scaffold_2-int 13102 13456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5451211..5451802 /note="source:INTACT598_F89_scaffold_2-int 9118 9672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5451800..5451848) /note="source:INTACT93F_F345_scaffold_2-int 12341 12389" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5455103..5455434 /note="source:CACAO_M_E42343_F106_scaffold_5 7839 8171" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5455437..5458384) /note="source:CACAO_M_E85191_F143_scaffold_10 1 2948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5459879..5464899) /note="source:INTACT251_F25_scaffold_10-int 1 5021" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(5464373..5469177) /locus_tag="TCM_043353" /note="dbxref CacaoGD:Thecc1EG043353" mRNA complement(join(5464373..5465390,5465979..5466016, 5466179..5466257,5466359..5466536,5466733..5466811, 5466900..5467271,5467438..5467798,5467942..5468071, 5468353..5468623,5468759..5468868,5468989..5469177)) /locus_tag="TCM_043353" /product="Cupredoxin superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002664t1" /inference="similar to AA sequence:ricco:29475.m000236" /note="quality class is strong, express is weak, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3059t1" CDS complement(join(5465389..5465390,5465979..5466016, 5466179..5466257,5466359..5466536,5466733..5466811, 5466900..5467271,5467438..5467798,5467942..5468071, 5468353..5468623,5468759..5468868,5468989..5469135)) /locus_tag="TCM_043353" /note="dbxref ricco:29475.m000236; paralog of Thecc1EG002664t1" /codon_start=1 /product="Cupredoxin superfamily protein" /protein_id="EOY18852.1" /db_xref="TAIR:AT5G48450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL71" /translation="MAFSGDFLRLIISAYIFTLLITIANGADIFLEWHVAISTSFNLF PAEQPVITINEMFPGPLINATTNDNIHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSG TNCPIQPGKNWTYVFQVKDQIGTFIYFPSINFLKAGGGFGPIRVNNRQVIQVPFPKPE AEFDLLIGDWYQKSYKEVRSMLKNSSMVYENPPDKILMNGKGSYIDDDSKAYESFTVT KGKTYRFRVSNVGTVWSFNFRIQNHQMVLVETEGSYVNQITLNSLDVHVGQSYSVLVT ADQEEKDYYIVAAPKMINASEFSSLLGVGVLHYDNSTIPARGLLPSGPDPFDIQFSID QAKSIRWNLTAGAARPNPQGTFNVSNVTLSQAFLLQGSAAEINGTPRYTVNNISYLTP DTPLKLADAYANGGSGVFELDKFPTNSSNLEAVNGVFVATGIHKGWIELVFKNDLEFI DTWHLDGFGFFVVGLGDEEWTPDSRSSYNTYDPVVRSTMQVYPGRWTAVFAYLDNPGM WNLRSQLLKNWYLGQELYLRVYDPDPDPAKERTPPENLLLCGIFGSPLPPPAPATPTT SDASSKQKTWFHIIMIFIVTIV" gene complement(5469888..5473601) /locus_tag="TCM_043354" /note="dbxref CacaoGD:Thecc1EG043354" mRNA complement(join(5469888..5470405,5470488..5470744, 5471232..5471319,5471831..5472083,5472192..5472368, 5472497..5472767,5473025..5473601)) /locus_tag="TCM_043354" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g33460.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043353t1" /inference="similar to AA sequence:ricco:29475.m000236" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1123t1" CDS complement(join(5470347..5470405,5470488..5470744, 5471232..5471319,5471831..5472083,5472192..5472368, 5472497..5472767,5473025..5473251)) /locus_tag="TCM_043354" /note="dbxref ricco:29475.m000236; paralog of Thecc1EG043353t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18853.1" /translation="MAYSSNLKWILVWGALFTVFATRTNGIDIFMDWNVSFSNSLSPL SIDQQACFYQSQLHFAKAFFLHFGLSPQDKIMNGIQQRLNSWQDGVSGTNCPIKPSTN WTYVFQIKDQIGSFSYFPSINFQKASGGYGPIRVNNRNVIAVPFLKPEAKFDLLIGDW YAGDYKYFRTLLGTEVSAYDVTPDAILMNGNGPYGHSMSTPYESFTVEKGMQRGKDRR NKVGLSALCVSSGKTYRFRISNVGKTLSFNFRIQNHTMLLVETEGSYTNQISLNSLDV HVGQSYSVLVTADQNDADFYMVASPKLLDTSIIGVYTLYQFPIQSVNSEAAYGISVVT GNHRGFGSGDWAPDSRNTYNVIDPIVRSTAQVYPGGWTAEYAFLDNPGMWNLRSQNLK NWYLGQELYIRVYDADPNPAKERPPPDNLLLCGIFYQSNAPAPAPGPLTGF" gene complement(5474335..5480204) /locus_tag="TCM_043355" /note="dbxref CacaoGD:Thecc1EG043355" mRNA complement(join(5474335..5474823,5475040..5475168, 5475478..5475599,5479882..5480151)) /locus_tag="TCM_043355" /product="Rab gtpase c2a, alpha,atrab,atrab18b,atrabc2a,rabc2a isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022301t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23620.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3072t3; inference alignment:Newbler:10:TSA:cgbaB_g00421t00001" mRNA complement(join(5474335..5474823,5475040..5475168, 5475478..5475599,5478941..5479009,5479882..5480151)) /locus_tag="TCM_043355" /product="Rab gtpase c2a, alpha,atrab,atrab18b,atrabc2a,rabc2a isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022301t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23620.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3072t2; inference alignment:Newbler:10:TSA:cgbaB_g00421t00001" mRNA complement(join(5474453..5474823,5475040..5475168, 5475478..5475599,5476646..5476711,5478941..5479009, 5479882..5480204)) /locus_tag="TCM_043355" /product="Rab gtpase c2a, alpha,atrab,atrab18b,atrabc2a,rabc2a isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022301t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23620.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00421t00001; inference alignment:Newbler:10:TSA:cgbaB_g00421t00001" CDS complement(join(5474710..5474823,5475040..5475168, 5475478..5475599,5479882..5480032)) /locus_tag="TCM_043355" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022301t1" /codon_start=1 /product="Rab gtpase c2a, alpha,atrab,atrab18b,atrabc2a,rabc2a isoform 3" /protein_id="EOY18856.1" /db_xref="Phytozome:POPTR_0010s23620.1" /db_xref="TAIR:AT5G03530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q40206" /translation="MLGSSSSKGGGNNSYDYSFKILLIGDSGVGKSSLLVSFISNFVH DLSPTIVYDVTRRETFTNLSEIWAKEVELYSTNHECIKILVGNKVDRDSERAVTREEG MALAQEHKCSFLECSAKTRENVHQCFKDLILKVLEVPALREKGSAVVKKQILQQKQEH KVPQSNGCCFQ" CDS complement(join(5474710..5474823,5475040..5475168, 5475478..5475599,5478941..5479009,5479882..5480032)) /locus_tag="TCM_043355" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022301t1" /codon_start=1 /product="Rab gtpase c2a, alpha,atrab,atrab18b,atrabc2a,rabc2a isoform 2" /protein_id="EOY18855.1" /db_xref="Phytozome:POPTR_0010s23620.1" /db_xref="TAIR:AT5G03530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q40206" /translation="MLGSSSSKGGGNNSYDYSFKILLIGDSGVGKSSLLVSFISNFVH DLSPTIGVDFKIKMVTVGGKRLKLTIWDTVYDVTRRETFTNLSEIWAKEVELYSTNHE CIKILVGNKVDRDSERAVTREEGMALAQEHKCSFLECSAKTRENVHQCFKDLILKVLE VPALREKGSAVVKKQILQQKQEHKVPQSNGCCFQ" CDS complement(join(5474710..5474823,5475040..5475168, 5475478..5475599,5476646..5476711,5478941..5479009, 5479882..5480032)) /locus_tag="TCM_043355" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022301t1" /codon_start=1 /product="Rab gtpase c2a, alpha,atrab,atrab18b,atrabc2a,rabc2a isoform 1" /protein_id="EOY18854.1" /db_xref="Phytozome:POPTR_0010s23620.1" /db_xref="TAIR:AT5G03530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q40206" /translation="MLGSSSSKGGGNNSYDYSFKILLIGDSGVGKSSLLVSFISNFVH DLSPTIGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR ETFTNLSEIWAKEVELYSTNHECIKILVGNKVDRDSERAVTREEGMALAQEHKCSFLE CSAKTRENVHQCFKDLILKVLEVPALREKGSAVVKKQILQQKQEHKVPQSNGCCFQ" mobile_element complement(5477691..5477742) /note="source:CACAO_M_E58230_F143_scaffold_9 1677 1728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5487901..5487959) /note="source:CACAO_M_S_E89272_F5_scaffold_8 18249 18307" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5491050..5497418 /locus_tag="TCM_043357" /note="dbxref CacaoGD:Thecc1EG043357" mRNA join(5491050..5491529,5492106..5492383,5492953..5493168, 5496371..5497418) /locus_tag="TCM_043357" /product="NAC domain protein, IPR003441" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23630.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23630.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3095t2" CDS join(5491292..5491529,5492106..5492383,5492953..5493168, 5496371..5496967) /locus_tag="TCM_043357" /codon_start=1 /product="NAC domain protein, IPR003441" /protein_id="EOY18857.1" /db_xref="Phytozome:POPTR_0010s23630.1" /db_xref="TAIR:AT3G10490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PB02" /translation="MGREKNSLTVVPGPTAAAAAAAAAKTGGSATALAPGFRFHPTDE ELVSYYLKRKVLNKPVRFNAIAEVDIYKQEPWELSDKSRLKTRDQEWYFFSLLDKKYG NGARMNRATSQGYWKATGKDREVRHNSQLIGMKKTLVFHSGRAPDGLRTNWVMHEYRL VEEESERIGALQGYVLCRVFHKNNIGPPNGNRYAPFVEAEWDDGSAALIPGVDAVDDV VAANDAVAGNDLAAAENGVQRIDFEQDIQYADEDSPPNDEVPRESLNERTDDCPPLPP CKIERSDDCPPLCVLNREAPLPLLQYKRRRHNDSGPNHANVSENSTRTTQDRCSSTTT TAATATTSPSSATTTAISALLEFSLMESIEPKENPHVPPPTYDTANLDSVVPPGCMKL INELQNEIHKISVDRETLKLEMMSAQAMINILQSRIDSLSKENEDLKRSN" mobile_element complement(5497864..5498544) /note="source:CACAO_M_E57346_F74_scaffold_9 3434 4112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5498549..5508673) /note="source:INTACT59_F126_scaffold_9-int 1561 14260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5506676..5513969 /note="source:CACAO_M_S_E16721_F36_scaffold_2 11881 19185" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5511974..5515183) /note="source:CACAO_M_E57346_F74_scaffold_9 1402 4723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5514928..5515224 /note="source:CACAO_M_S_E16721_F36_scaffold_2 20251 20590" /mobile_element_type="retrotransposon:LTR/Copia" gene 5517504..5521017 /locus_tag="TCM_043359" /note="dbxref CacaoGD:Thecc1EG043359" mRNA join(5517504..5517646,5518630..5518690,5518877..5518973, 5519047..5519132,5519227..5519271,5519786..5519916, 5520471..5520581,5520669..5521017) /locus_tag="TCM_043359" /product="Translation initiation factor IF6 isoform 1" /inference="alignment:exonerate- protein:2:ricco:28592.m000280" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000030t2" /inference="similar to AA sequence:ricco:28592.m000280" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9216t1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9216t1" mRNA join(5517504..5517620,5518630..5518690,5518877..5518973, 5519047..5519132,5519227..5519271,5519786..5519916, 5520471..5520581,5520669..5521017) /locus_tag="TCM_043359" /product="Translation initiation factor IF6 isoform 1" /inference="alignment:exonerate- protein:2:ricco:28592.m000280" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000030t2" /inference="similar to AA sequence:ricco:28592.m000280" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9216t3; alternateUTRof:Thecc1EG043359t1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9216t1" CDS join(5518681..5518690,5518877..5518973,5519047..5519132, 5519227..5519271,5519786..5519916,5520471..5520581, 5520669..5520926) /locus_tag="TCM_043359" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28592.m000280; paralog of Thecc1EG000030t2" /codon_start=1 /product="Translation initiation factor IF6 isoform 1" /protein_id="EOY18858.1" /db_xref="TAIR:AT3G55620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P56537" /translation="MATRLKFENSCEVGVFSKLTNAYCLVAIGGSESFCSAFESELAD VIPVIKTSIAGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVRRIEEKLS ALGNCIACNDHVALTHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCAFSNRGGL VHPHTSIEDLNELSTLLQVPLVAGTINRGSEVIAAGMTVNDWTAFCGSDTTATELSVI ENVFKLREAQPSAIVDEMRKSLIDSSV" CDS join(5518681..5518690,5518877..5518973,5519047..5519132, 5519227..5519271,5519786..5519916,5520471..5520581, 5520669..5520926) /locus_tag="TCM_043359" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28592.m000280; paralog of Thecc1EG000030t2" /codon_start=1 /product="Translation initiation factor IF6 isoform 1" /protein_id="EOY18859.1" /db_xref="TAIR:AT3G55620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P56537" /translation="MATRLKFENSCEVGVFSKLTNAYCLVAIGGSESFCSAFESELAD VIPVIKTSIAGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVRRIEEKLS ALGNCIACNDHVALTHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCAFSNRGGL VHPHTSIEDLNELSTLLQVPLVAGTINRGSEVIAAGMTVNDWTAFCGSDTTATELSVI ENVFKLREAQPSAIVDEMRKSLIDSSV" gene 5523595..5527771 /locus_tag="TCM_043360" /note="dbxref CacaoGD:Thecc1EG043360" mRNA join(5523595..5523919,5524486..5524763,5524852..5525046, 5525591..5526408,5526511..5527771) /locus_tag="TCM_043360" /product="NAC domain containing protein 2, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016175001" /inference="similar to AA sequence:ricco:28872.m000248" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:PASA:2:TSA:puevd3b041838t1a2; inference alignment:Newbler:10:TSA:cgbaL_g09834t00001" mRNA join(5523607..5523919,5524486..5524763,5524852..5525046, 5525591..5526202,5526294..5526408,5526511..5527771) /locus_tag="TCM_043360" /product="NAC domain protein, IPR003441, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016175001" /inference="similar to AA sequence:Phytozome:POPTR_0008s03170.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09834t00001" CDS join(5523757..5523919,5524486..5524763,5524852..5525046, 5525591..5526202,5526294..5526408,5526511..5526920) /locus_tag="TCM_043360" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NAC domain protein, IPR003441, putative isoform 1" /protein_id="EOY18860.1" /db_xref="Phytozome:POPTR_0008s03170.1" /db_xref="TAIR:AT5G04410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUM1" /translation="MSRHSATSLAPGFRFHPTDEELVRYYLKRKVLNKPSFDAISVVD VYRSEPWDLPDKSKLKSRDLEWYFFSALDKKYGNGSRTNRATERGYWKTTGKDRPIRY RERVVGMKKTLVYHKGRAPRGERTNWVMHEYRLIDEELEKSGIQQGAFVLCRVFQKSG SGPKNGEQYGAPFIEEEWEDDEAIFVPGQHAVAMDEEVANYDAFVEVNDFDKNLDIGS PSENAIPPQNFYHGQSNNYVEYSREFSEDYQKPPGNMSGNALLPSNFYHGESSNHAEH SMEFTEDYQKPTVMHSTESDSKPHHEHVFSDLPQPNGIATIVKPVKDEYVVEPIENVN PADNNYFLDEPYLDVTDYLPANDGFFLEANDLSNPIGPESDVFDPDEYLTFIDADDQP LAFDSDQMVGSEIPVSDQEPLAQTHSNGGTEQVSNASEHLEELGNSDASSSKQELEPT KFESGTKYPFLKQASHMLGSFPAPPAFASEFPSKDAALKLNSAAQASSSVHVVAGMIR ITNMTSSGNQLDWSHSKNGNVNIVLSFSLPQGDVNSSNFLPMASLLSGKAGSVLARGW FFLMLLWVLIITVSLKFGTCIYTR" CDS join(5523757..5523919,5524486..5524763,5524852..5525046, 5525591..5526226) /locus_tag="TCM_043360" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28872.m000248" /codon_start=1 /product="NAC domain containing protein 2, putative isoform 2" /protein_id="EOY18861.1" /db_xref="TAIR:AT5G04410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T308" /translation="MSRHSATSLAPGFRFHPTDEELVRYYLKRKVLNKPSFDAISVVD VYRSEPWDLPDKSKLKSRDLEWYFFSALDKKYGNGSRTNRATERGYWKTTGKDRPIRY RERVVGMKKTLVYHKGRAPRGERTNWVMHEYRLIDEELEKSGIQQGAFVLCRVFQKSG SGPKNGEQYGAPFIEEEWEDDEAIFVPGQHAVAMDEEVANYDAFVEVNDFDKNLDIGS PSENAIPPQNFYHGQSNNYVEYSREFSEDYQKPPGNMSGNALLPSNFYHGESSNHAEH SMEFTEDYQKPTVMHSTESDSKPHHEHVFSDLPQPNGIATIVKPVKDEYVVEPIENVN PADNNYFLDEPYLDVTDYLPANDGFFLEANDLSNPIGPESDVFDPDEYLTFIDADDQP LAFDSDQMVGSEIPVSDQEPLAQTVHNSFLS" gene complement(5528366..5534422) /locus_tag="TCM_043361" /note="dbxref CacaoGD:Thecc1EG043361" mRNA complement(join(5528366..5528889,5528977..5529030, 5529173..5529241,5529347..5529415,5529816..5529938, 5530052..5530153,5530236..5530310,5530422..5530512, 5530660..5530730,5530824..5531005,5531323..5531407, 5532192..5532278,5533777..5533870,5533975..5534422)) /locus_tag="TCM_043361" /product="Lactate/malate dehydrogenase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016172001" /inference="similar to AA sequence:Phytozome:POPTR_0008s03160.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06115t00001" CDS complement(join(5528836..5528889,5528977..5529030, 5529173..5529241,5529347..5529415,5529816..5529938, 5530052..5530153,5530236..5530310,5530422..5530512, 5530660..5530730,5530824..5531005,5531323..5531407, 5532192..5532278,5533777..5533870,5533975..5534144)) /locus_tag="TCM_043361" /codon_start=1 /product="Lactate/malate dehydrogenase family protein" /protein_id="EOY18862.1" /db_xref="Phytozome:POPTR_0008s03160.1" /db_xref="TAIR:AT5G58330.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P37229" /translation="MALAELSTSYTKTATRYHFSQLSLSSASSRFSDHFRRSFRPTSR TRNATISCSVTSDQVQARIPVEAESPKGKTECYGVFCLTYDLKAEEETKSWEKLVNIA VSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSIQALEGVAMELEDSLFPLLR EVRIGINPYEVFQDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASHNV KVIVVGNPCNTNALICMKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDQVSNMT IWGNHSTTQVPDFLNARISGLPVKEVIKDHKWLEEEFTEMVQKRGGVLIQKWGRSSAA STAVSIVDAIKSLITPTPEGDWFSSGVYTNGNPYSIVEDIVFSMPCRSKGDGDYELVK DVIFDDYVLKRIRKTEAELLAEKRCVAHLTGEGIAYCDLPEDTMLPGEM" mobile_element complement(5537622..5538023) /note="source:scaffold_8_CACTA_0859 15426 15827" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5538192..5540785) /note="source:CACAO_M_E85189_F53_scaffold_10 1 2594" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5540815..5541767) /note="source:scaffold_8_CACTA_0859 494 1467" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5545131..5545323) /note="source:INTACT555_F251_scaffold_2-int 2047 2245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5550405..5550529 /note="source:CACAO_M_E9978_F12_scaffold_2 5955 6084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5550530..5551026) /note="source:CACAO_M_E85187_F15_scaffold_10 2326 2822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5551306..5553630) /note="source:CACAO_M_E85187_F15_scaffold_10 1 2325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5554619..5557211) /note="source:CACAO_M_E52905_F288_scaffold_8 373 2982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5557210..5558871 /note="source:CACAO_M_E58324_F9_scaffold_9 18545 20210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5558972..5560308) /note="source:CACAO_M_E12376_F15_scaffold_3 1 1334" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5562373..5565532 /locus_tag="TCM_043363" /note="dbxref CacaoGD:Thecc1EG043363" mRNA join(5562373..5564279,5564389..5564456,5564539..5564641, 5564970..5565091,5565197..5565532) /locus_tag="TCM_043363" /product="Acyl:coa ligase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034347t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23680.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS join(5562873..5564279,5564389..5564456,5564539..5564641, 5564970..5565091,5565197..5565200) /locus_tag="TCM_043363" /note="paralog of Thecc1EG034347t1" /codon_start=1 /product="Acyl:coa ligase" /protein_id="EOY18863.1" /db_xref="Phytozome:POPTR_0010s23680.1" /db_xref="TAIR:AT1G20510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUM4" /translation="MSVEESWTVPIKEESGNSQPLVNRGGFDSHTGIYSSLFPLSDHL KFPSDPDLGIASFVLSQFPHPQVGESKVALIDSATNQQLTYAQLHRSIQSLACGLYHL GVRKGDVVFLLSPNSLLYPTICLAILSLGAILSPTNPINTPSEIAKQVLDSGAKLAIS APEELHKLLQTGVPTIITSRQSDEDSLSIEELIECCDPRELPETKVKQSDTAAILYSS GTTGTSKGVILTHSNFITTTRLVRWYAEATSSQNDIFLGFIPIFHIYGLAFFGVGLLT AGITTVLMPRFDLQAMLDAIQTHKVNNIPAVPPVILGLVKYCKGNSKLSTLRRVGSGA APLSKELTDAFREQFPWVELRQGYGLTETCGATSGFVSHEEAKAHPGSCGMLLPTCCA KVVDTETGLALPPYRKGELWLNGPTTMKGYLGNEEATAATIAKDGWLKTGDLGYFDED GFLYIVDRIKELIKHNGYQVAPAELEAVLLGHPDIVDAAVIPVEDEESGQIPMAYVVK AAASQLTEEQVIKFVATQVAPYKKVRRVEFINAIPKSAAGKILRKELILQSQQQILSK L" gene complement(5565484..5574831) /locus_tag="TCM_043364" /note="dbxref CacaoGD:Thecc1EG043364" mRNA complement(join(5565484..5566166,5566265..5566324, 5566396..5566716,5566831..5566914,5567257..5567345, 5567422..5567536,5571740..5571866,5571950..5572089, 5572293..5572354,5572492..5572558,5572695..5572814, 5572890..5572967,5573174..5573283,5574436..5574831)) /locus_tag="TCM_043364" /product="Galactose oxidase/kelch repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026635t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016168001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:PASA:2:TSA:puevd3b041842t1a2; alternateUTRof:Thecc1EG043364t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3199t1" mRNA complement(join(5565484..5566166,5566265..5566324, 5566396..5566716,5566831..5566914,5567257..5567345, 5567422..5567536,5571740..5571866,5571950..5572089, 5572293..5572354,5572492..5572558,5572695..5572814, 5572890..5572967,5573174..5573280,5574436..5574814)) /locus_tag="TCM_043364" /product="Galactose oxidase/kelch repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026635t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016168001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3199t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3199t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc89t7" mRNA complement(join(5565537..5566166,5566265..5566324, 5566396..5566716,5566831..5566914,5567257..5567345, 5567422..5567536,5571740..5571866,5571950..5572089, 5572293..5572354,5572492..5572558,5572695..5572814, 5572890..5572967,5573174..5573295,5574436..5574831)) /locus_tag="TCM_043364" /product="Galactose oxidase/kelch repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026635t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3199t1" CDS complement(join(5565999..5566166,5566265..5566324, 5566396..5566716,5566831..5566914,5567257..5567345, 5567422..5567536,5571740..5571866,5571950..5572089, 5572293..5572354,5572492..5572558,5572695..5572814, 5572890..5572967,5573174..5573290)) /locus_tag="TCM_043364" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026635t1" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 1" /protein_id="EOY18864.1" /db_xref="Phytozome:POPTR_0008s03110.1" /db_xref="TAIR:AT5G04420.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUM5" /translation="MGAEEIKKEMDISKWPSDLAYEQWVALPVSGARPSARYKHAAAV VGEKLYIHGGSRNGRYLSDIQVFDLRSLTWSSLKLKIESDADKSEDSGSQEVPPGTSD HSMIKWENNLLLLGGHSKKSSDAMIVHVLNLETHVCGVMETSGKVPVARGGYSVTLVG SKLIVFGGEDRSRKLLNDVHVLDLETMTWSMVEAMQTPPTPRFDHTAAVHAERYLLIF GGCSHSIFFNDLHVLDLQTMEWSQPQVQGDLVSPRAGHAGISIDEMWYIVGGGDNSNG CLETLALNMSKLVWSTLTTLKERHPLASEGLSVCSAIIDGEKHLVAFGGYNGKYSNEV FVMKLKPRDSSHPKIFQSPAAAAAAASVTAAYALAKSEKLDFPQIIDLNFNGVENNVP KKDVNIEIDAIKEEKKVLELSIEEVTAENSRLREKIDEFNSNHTELSKELQSVQGQLI SERSRCFKLEAQIAELQKMLESLQSIENEVQVLRRQKSALEQEMELSAAQRQGSGGVW RWIAGST" CDS complement(join(5565999..5566166,5566265..5566324, 5566396..5566716,5566831..5566914,5567257..5567345, 5567422..5567536,5571740..5571866,5571950..5572089, 5572293..5572354,5572492..5572558,5572695..5572814, 5572890..5572967,5573174..5573263)) /locus_tag="TCM_043364" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026635t1" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 2" /protein_id="EOY18865.1" /db_xref="Phytozome:GSVIVT01016168001" /db_xref="TAIR:AT5G04420.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUM5" /translation="MDISKWPSDLAYEQWVALPVSGARPSARYKHAAAVVGEKLYIHG GSRNGRYLSDIQVFDLRSLTWSSLKLKIESDADKSEDSGSQEVPPGTSDHSMIKWENN LLLLGGHSKKSSDAMIVHVLNLETHVCGVMETSGKVPVARGGYSVTLVGSKLIVFGGE DRSRKLLNDVHVLDLETMTWSMVEAMQTPPTPRFDHTAAVHAERYLLIFGGCSHSIFF NDLHVLDLQTMEWSQPQVQGDLVSPRAGHAGISIDEMWYIVGGGDNSNGCLETLALNM SKLVWSTLTTLKERHPLASEGLSVCSAIIDGEKHLVAFGGYNGKYSNEVFVMKLKPRD SSHPKIFQSPAAAAAAASVTAAYALAKSEKLDFPQIIDLNFNGVENNVPKKDVNIEID AIKEEKKVLELSIEEVTAENSRLREKIDEFNSNHTELSKELQSVQGQLISERSRCFKL EAQIAELQKMLESLQSIENEVQVLRRQKSALEQEMELSAAQRQGSGGVWRWIAGST" CDS complement(join(5565999..5566166,5566265..5566324, 5566396..5566716,5566831..5566914,5567257..5567345, 5567422..5567536,5571740..5571866,5571950..5572089, 5572293..5572354,5572492..5572558,5572695..5572814, 5572890..5572967,5573174..5573263)) /locus_tag="TCM_043364" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG026635t1" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 2" /protein_id="EOY18866.1" /db_xref="Phytozome:GSVIVT01016168001" /db_xref="TAIR:AT5G04420.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUM5" /translation="MDISKWPSDLAYEQWVALPVSGARPSARYKHAAAVVGEKLYIHG GSRNGRYLSDIQVFDLRSLTWSSLKLKIESDADKSEDSGSQEVPPGTSDHSMIKWENN LLLLGGHSKKSSDAMIVHVLNLETHVCGVMETSGKVPVARGGYSVTLVGSKLIVFGGE DRSRKLLNDVHVLDLETMTWSMVEAMQTPPTPRFDHTAAVHAERYLLIFGGCSHSIFF NDLHVLDLQTMEWSQPQVQGDLVSPRAGHAGISIDEMWYIVGGGDNSNGCLETLALNM SKLVWSTLTTLKERHPLASEGLSVCSAIIDGEKHLVAFGGYNGKYSNEVFVMKLKPRD SSHPKIFQSPAAAAAAASVTAAYALAKSEKLDFPQIIDLNFNGVENNVPKKDVNIEID AIKEEKKVLELSIEEVTAENSRLREKIDEFNSNHTELSKELQSVQGQLISERSRCFKL EAQIAELQKMLESLQSIENEVQVLRRQKSALEQEMELSAAQRQGSGGVWRWIAGST" mobile_element complement(5567955..5568433) /note="source:CACAO_M_S_E101631_F270_scaffold_9 19385 19860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5568425..5569520) /note="source:scaffold_10_CACTA_0130 2685 3784" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5568632..5569518 /note="source:scaffold_6_CACTA_0702 3112 4015" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5569526..5570076) /note="source:scaffold_6_CACTA_0702 4070 4610" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5570171..5571101) /note="source:scaffold_6_CACTA_0702 3112 4075" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5570179..5571402 /note="source:scaffold_10_CACTA_0130 2643 3847" /mobile_element_type="transposon:TIR/CACTA" gene complement(5575006..5589838) /locus_tag="TCM_043365" /note="dbxref CacaoGD:Thecc1EG043365" mRNA complement(join(5575006..5575398,5584873..5585069, 5586332..5586368,5586654..5586976,5587142..5587383, 5587993..5588057,5588419..5588435,5588874..5589018, 5589671..5589838)) /locus_tag="TCM_043365" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete" mobile_element 5575210..5575409 /note="source:scaffold_8_CACTA_0867 8159 8368" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5575778..5576750 /note="source:scaffold_8_CACTA_0867 8607 9580" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5577748..5581458 /note="source:CACAO_on_E28_A_scaffold_2 378 4040" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(5580423..5582104) /note="source:scaffold_8_CACTA_0856 762 2436" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5582477..5582918) /note="source:scaffold_8_CACTA_0856 124 591" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5584059..5584593) /note="source:scaffold_9_CACTA_0946 3896 4373" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(5585019..5585069,5586332..5586368, 5586654..5586976,5587142..5587383,5587993..5588057, 5588419..5588435,5588874..5589018,5589671..5589753)) /locus_tag="TCM_043365" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18867.1" /translation="MVVENFLLKWLVGGYGGVVGGWCLVVNGDDEGKVGEVKVKVGTS IRGGLGSSIGSSLGRGKGRGGEGRVGERPSAICELQERVEEWCPIPLKQSALGTFITI LGHIKGDLEQYCDNYYSKEKFMLAYNVYIHPIPDIAMAEFKRQVDLLKPPLLNRMPDR PKKYKRREQGERPARHGNGRSSSTQNTLPKSSSITTESSSRAAVRFSSRVATVSSLRA VIWSSSRVVASRTSRGPISVQKRLVAITTSGLDDGAHGSARHAFLMMVQKGLHFLDLL PLLPLLPLWPLLPLPREDSGPHVHKGLDWNSKLTLSTAKSDWWR" mobile_element complement(5588037..5588848) /note="source:CACAO_Mutator_E1376_scaffold_6 2560 3365" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5588853..5589267) /note="source:CACAO_Mutator_E1376_scaffold_6 1975 2363" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5592425..5592522 /note="source:CACAO_LINE_E_3_scaffold_1 2176 2274" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(5592435..5593119) /note="source:CACAO_LINE_E_66_scaffold_2 425 1128" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 5592709..5593288 /note="source:CACAO_LINE_E_91_scaffold_3 20 581" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(5593379..5594934) /note="source:CACAO_M_S_E6284_F17_scaffold_2 3 1545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5594950..5595015 /note="source:CACAO_Mutator_E1376_scaffold_6 855 921" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5600895..5600987 /note="source:INTACT591_F264_scaffold_1-int 4696 4785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5602014..5606448 /note="source:scaffold_1_CACTA_0009 1618 7306" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5604884..5608861 /note="source:CACAO_on_S_E176_scaffold_5 1673 4831" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5608833..5612293) /note="source:CACAO_on_E193_scaffold_6 58 3517" /mobile_element_type="transposon:TIR/Mutator" gene complement(5609552..5618501) /locus_tag="TCM_043370" /note="dbxref CacaoGD:Thecc1EG043370" mRNA complement(join(5609552..5610236,5610693..5611130, 5611417..5611543,5611961..5612512,5614530..5615098, 5618409..5618501)) /locus_tag="TCM_043370" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044738t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(join(5609905..5610236,5610693..5611130, 5611417..5611543,5611961..5612026)) /locus_tag="TCM_043370" /note="paralog of Thecc1EG044738t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18868.1" /translation="MQRVKSDLSFVGLMKLVEDVVGVVMEFSNENATLEDNIATLEGD ITTFEDKTASNEGNEDLFLVGAEKFSFQTIITKESTCADDHLYKGRIFSSKVELKRAL NMLALKEHFGIRVKRSCTGHYKVGCKDKACKFSVRATKLPEGGEYWQVRTFHKVHTCT VDGLQGRFATASVKIIGELMSHKVQANEVALRPKDIIGEMRVQWGFECLYELHHSLCG YHLKKNFKNKFKRDDVSMIFTLARDYYKVSGFNRHMNQLKQIHARAHTDLMRIGPKRW ARACSLARRYQMMTSNIAECVNSCLKHARQMLITILIKFIRDKF" mobile_element 5612185..5612472 /note="source:CACAO_Mutator_E1149_scaffold_5 13464 13719" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5612447..5613090 /note="source:CACAO_Mutator_E39_scaffold_1 3470 4105" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5614080..5615901 /note="source:CACAO_M_E85923_F17_scaffold_12 1 1820" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5618889..5630321 /locus_tag="TCM_043371" /note="dbxref CacaoGD:Thecc1EG043371" mRNA join(5618889..5619552,5619642..5619716,5619829..5619921, 5620006..5620080,5620192..5620284,5620516..5620579, 5620687..5620771,5620909..5620981,5621145..5621213, 5621311..5621391,5621599..5621680,5621775..5621939, 5623163..5623301,5624400..5624571,5624927..5625028, 5625109..5625657,5625800..5626954,5627376..5627609, 5628163..5628306,5628522..5628602,5628732..5628920, 5629461..5630309) /locus_tag="TCM_043371" /product="ATP binding protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene12599" /inference="similar to AA sequence:Phytozome:GSVIVT01024439001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc483t2" CDS join(5619463..5619552,5619642..5619716,5619829..5619921, 5620006..5620080,5620192..5620284,5620516..5620579, 5620687..5620771,5620909..5620981,5621145..5621213, 5621311..5621391,5621599..5621680,5621775..5621939, 5623163..5623301,5624400..5624571,5624927..5625028, 5625109..5625657,5625800..5626954,5627376..5627609, 5628163..5628306,5628522..5628602,5628732..5628920, 5629461..5629706) /locus_tag="TCM_043371" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ATP binding protein, putative isoform 1" /protein_id="EOY18869.1" /db_xref="Phytozome:GSVIVT01024439001" /db_xref="TAIR:AT1G50240.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1Z3" /translation="MGIEEYHVIELVGEGSFGKVYKGRRKYTGQTVAMKFIMKHGKTE KDIHNLRQEIEILRKLKHENIIEMIDSFESQQEFCVVTEFAQGDLFQILEDDKCLPEE QVQAIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSTNTVVLR SIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDP VIYPDDMSASFKSFLKGLLNKVPQNRLTWPALLEHPFVKETLDEVEAREVLATTTPTR RSDVAFRGEENNFQTPNGQGNSPAASETCNAPSLHSDAHSDAQKYSPNTVQGNSVLHE EFPGFSNPNDIKQSGNQALDRLENNSRTVNGAQIIGKDNEALALVLLPIKRWSEGSQN ACRDQDILHSSQSLRILSNLVSAGALHSDGILDEIMCELLNFTAILVGLKSSDVFELV AKSFSVTKMLLAENNGSDIANSYFKHWVVLVEIFSQVVGCIEDPSGRVFSESCACITT ILARVAQGLRAYSLTQVPKGISSPSMVNESLKQILDNAVTSRLVDHLCLCLATSGSSL SSGSTNMLRAACEACRAIWSLMDALEISFVKENPNLFPLDALWNHSLVRLDIRDHARG LLTGTESAKVIDVVTRAFVRSKAVQFAIVHCLHQRVEPALSAAIQILSRCCLHNGIIP TVLCGFPNSLPVTTVVSGGADGTIVSELFSILSLCSSLSKDAQTETANLKCKISNPPA LTLHSCLLIATVAQCLKSTGRNSALFMLTTSPKKQLTRLSILAHHVSSNDTTITSLQP HSASAMLALASILSLEGGLSVESSISEIAVPLIPPTSTLCDHLKISSEIENEVGSKSP KVVLSYWHGLRDGCVGLLESKLKWGGPLAVQQLIASGIPLLLINLLASNHLNASRQGV GSLNDGVGLSPTGVVWAVSAICHCLSGGLLTFRQALLSSEHMKLICSLISDVHLKLVR SWIGPGGGKDGVRDIINTVIDFLAFPFVAVQNAPGLPLATASVNSGFILNMGSPASRV CMEDKDMVKAIEDDMGKYIKILLEVGVPGIILRCLEQLESKDLGRTVAFLAKMIGHRP LAVQLVGKGLLDPNRMRRLLDCSSPREATLDTLMIVSDLARMDKGFYEFINGASILDI LRGFLTHEDPNIRAKACNALGNMCRHSAYFYDALARHHIIGLLIDRCADPDKRTRKFA CFAIGNAAYHNDMLYEELRRSIPQLAKLLLSAEEDKTKANAAGALSNLVRNSNKLCEE IISKGAMQALLKLVADCTVVALNPSRKDAINESPLKIALFSLGKMCAYPHCRQFLRAS ELFPVIGRLRQSPESGIAKLALTIVSKITDA" mRNA join(<5620242..5620284,5620516..5620579,5620687..5620771, 5620909..5620981,5621145..5621213,5621311..5621391, 5621599..5621680,5621775..5621939,5623163..5623301, 5624400..5624571,5624927..5625028,5625109..5625657, 5625800..5626954,5627376..5627609,5628163..5628306, 5628522..5628602,5628732..5628920,5629348..>5629362) /locus_tag="TCM_043371" /product="ATP binding protein, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene12599" /inference="similar to AA sequence:Phytozome:GSVIVT01024439001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc483t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc483t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc487t4" CDS join(<5620243..5620284,5620516..5620579,5620687..5620771, 5620909..5620981,5621145..5621213,5621311..5621391, 5621599..5621680,5621775..5621939,5623163..5623301, 5624400..5624571,5624927..5625028,5625109..5625657, 5625800..5626954,5627376..5627609,5628163..5628306, 5628522..5628602,5628732..5628920,5629348..>5629362) /locus_tag="TCM_043371" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="ATP binding protein, putative isoform 3" /protein_id="EOY18871.1" /db_xref="Phytozome:GSVIVT01024439001" /db_xref="TAIR:AT1G50240.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1Z3" /translation="KPQNILIGAGSVVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPE LVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVIYPDDMSASFK SFLKGLLNKVPQNRLTWPALLEHPFVKETLDEVEAREVLATTTPTRRSDVAFRGEENN FQTPNGQGNSPAASETCNAPSLHSDAHSDAQKYSPNTVQGNSVLHEEFPGFSNPNDIK QSGNQALDRLENNSRTVNGAQIIGKDNEALALVLLPIKRWSEGSQNACRDQDILHSSQ SLRILSNLVSAGALHSDGILDEIMCELLNFTAILVGLKSSDVFELVAKSFSVTKMLLA ENNGSDIANSYFKHWVVLVEIFSQVVGCIEDPSGRVFSESCACITTILARVAQGLRAY SLTQVPKGISSPSMVNESLKQILDNAVTSRLVDHLCLCLATSGSSLSSGSTNMLRAAC EACRAIWSLMDALEISFVKENPNLFPLDALWNHSLVRLDIRDHARGLLTGTESAKVID VVTRAFVRSKAVQFAIVHCLHQRVEPALSAAIQILSRCCLHNGIIPTVLCGFPNSLPV TTVVSGGADGTIVSELFSILSLCSSLSKDAQTETANLKCKISNPPALTLHSCLLIATV AQCLKSTGRNSALFMLTTSPKKQLTRLSILAHHVSSNDTTITSLQPHSASAMLALASI LSLEGGLSVESSISEIAVPLIPPTSTLCDHLKISSEIENEVGSKSPKVVLSYWHGLRD GCVGLLESKLKWGGPLAVQQLIASGIPLLLINLLASNHLNASRQGVGSLNDGVGLSPT GVVWAVSAICHCLSGGLLTFRQALLSSEHMKLICSLISDVHLKLVRSWIGPGGGKDGV RDIINTVIDFLAFPFVAVQNAPGLPLATASVNSGFILNMGSPASRVCMEDKDMVKAIE DDMGKYIKILLEVGVPGIILRCLEQLESKDLGRTVAFLAKMIGHRPLAVQLVGKGLLD PNRMRRLLDCSSPREATLDTLMIVSDLARMDKGFYEFINGASILDILRGFLTHEDPNI RAKACNALGNMCRHSAYFYDALARHHIIGLLIDRCADPDKRTRKFACFAIGNAAYHND MLYEELRRSIPQLAKLLLSAEEDKTKANAAGALSNLVRNSNKLCEEIISKGAMQALLK L" mRNA join(5620615..5620771,5620909..5620981,5621145..5621213, 5621311..5621391,5621599..5621680,5621775..5621939, 5623163..5623301,5624400..5624571,5624927..5625028, 5625109..5625657,5625800..5626954,5627376..5627609, 5628163..5628306,5628522..5628602,5628732..5628920, 5629461..5629715,5630041..5630321) /locus_tag="TCM_043371" /product="ATP binding protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene12599" /inference="similar to AA sequence:Phytozome:GSVIVT01024439001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc487t4; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc487t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc483t2" CDS join(5620701..5620771,5620909..5620981,5621145..5621213, 5621311..5621391,5621599..5621680,5621775..5621939, 5623163..5623301,5624400..5624571,5624927..5625028, 5625109..5625657,5625800..5626954,5627376..5627609, 5628163..5628306,5628522..5628602,5628732..5628920, 5629461..5629706) /locus_tag="TCM_043371" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ATP binding protein, putative isoform 2" /protein_id="EOY18870.1" /db_xref="Phytozome:GSVIVT01024439001" /db_xref="TAIR:AT1G50240.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1Z3" /translation="MAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIR HIVKDPVIYPDDMSASFKSFLKGLLNKVPQNRLTWPALLEHPFVKETLDEVEAREVLA TTTPTRRSDVAFRGEENNFQTPNGQGNSPAASETCNAPSLHSDAHSDAQKYSPNTVQG NSVLHEEFPGFSNPNDIKQSGNQALDRLENNSRTVNGAQIIGKDNEALALVLLPIKRW SEGSQNACRDQDILHSSQSLRILSNLVSAGALHSDGILDEIMCELLNFTAILVGLKSS DVFELVAKSFSVTKMLLAENNGSDIANSYFKHWVVLVEIFSQVVGCIEDPSGRVFSES CACITTILARVAQGLRAYSLTQVPKGISSPSMVNESLKQILDNAVTSRLVDHLCLCLA TSGSSLSSGSTNMLRAACEACRAIWSLMDALEISFVKENPNLFPLDALWNHSLVRLDI RDHARGLLTGTESAKVIDVVTRAFVRSKAVQFAIVHCLHQRVEPALSAAIQILSRCCL HNGIIPTVLCGFPNSLPVTTVVSGGADGTIVSELFSILSLCSSLSKDAQTETANLKCK ISNPPALTLHSCLLIATVAQCLKSTGRNSALFMLTTSPKKQLTRLSILAHHVSSNDTT ITSLQPHSASAMLALASILSLEGGLSVESSISEIAVPLIPPTSTLCDHLKISSEIENE VGSKSPKVVLSYWHGLRDGCVGLLESKLKWGGPLAVQQLIASGIPLLLINLLASNHLN ASRQGVGSLNDGVGLSPTGVVWAVSAICHCLSGGLLTFRQALLSSEHMKLICSLISDV HLKLVRSWIGPGGGKDGVRDIINTVIDFLAFPFVAVQNAPGLPLATASVNSGFILNMG SPASRVCMEDKDMVKAIEDDMGKYIKILLEVGVPGIILRCLEQLESKDLGRTVAFLAK MIGHRPLAVQLVGKGLLDPNRMRRLLDCSSPREATLDTLMIVSDLARMDKGFYEFING ASILDILRGFLTHEDPNIRAKACNALGNMCRHSAYFYDALARHHIIGLLIDRCADPDK RTRKFACFAIGNAAYHNDMLYEELRRSIPQLAKLLLSAEEDKTKANAAGALSNLVRNS NKLCEEIISKGAMQALLKLVADCTVVALNPSRKDAINESPLKIALFSLGKMCAYPHCR QFLRASELFPVIGRLRQSPESGIAKLALTIVSKITDA" mobile_element 5633811..5633902 /note="source:CACAO_Mariner_E176_scaffold_6 1531 1621" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 5633933..5634293 /note="source:CACAO_Mariner_E176_scaffold_6 1930 2300" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 5634413..5635842 /locus_tag="TCM_043372" /note="dbxref CacaoGD:Thecc1EG043372" mRNA 5634413..5635842 /locus_tag="TCM_043372" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage" CDS 5634972..5635604 /locus_tag="TCM_043372" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18872.1" /translation="MTSSRVIGAAFLVLLFVDLAFAARSLKAVGKGGGGGGGGGGSGG GGGGGSGLGSGSGYGSGYGSGSGSGYGSGAYGSGGGGGGGGGGEGGGGGSGSGSGYGS GSGSGYGSGYGSGSGTGSGGGGGGGRGGGGGGGGGSGSGGGSGYGSGSGSGSGYGSGG GRGGGSGGGGGGGGGRGGGGGNGSGHGSGYGSGSGYGSGYGGGGDDDYLP" gene complement(5636794..5643457) /locus_tag="TCM_043373" /note="dbxref CacaoGD:Thecc1EG043373" mRNA complement(join(5636794..5637385,5637500..5637561, 5637639..5637734,5638117..5638181,5639172..5639365, 5640836..5640942,5641021..5641259,5643041..5643149, 5643292..5643457)) /locus_tag="TCM_043373" /product="Binding to TOMV RNA 1L (long form) isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23710.1" /inference="similar to AA sequence:ricco:28872.m000243" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3207t1; inference alignment:Newbler:10:TSA:cgbaL_g15232t00001; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc468t5" mRNA complement(join(5636794..5637385,5637500..5637561, 5637639..5637734,5638117..5638241,5639172..5639365, 5640836..5640942,5641021..5641259,5643041..5643149, 5643292..5643457)) /locus_tag="TCM_043373" /product="Binding to TOMV RNA 1L isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23710.1" /inference="similar to AA sequence:Phytozome:Glyma10g34220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3207t4; inference alignment:Newbler:10:TSA:cgbaL_g15232t00001; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc468t5" mRNA complement(join(5636794..5637385,5637500..5637734, 5638117..5638241,5639172..5639365,5640836..5640942, 5641021..5641259,5643041..5643149,5643292..5643457)) /locus_tag="TCM_043373" /product="Binding to TOMV RNA 1L (long form) isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23710.1" /inference="similar to AA sequence:Phytozome:Glyma10g34220.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b041851t1a4; inference alignment:Newbler:10:TSA:cgbaL_g15232t00001" mRNA complement(join(5636897..5637385,5637500..5637561, 5637639..5637734,5638117..5638178,5639172..5639365, 5640836..5640942,5641021..5641259,5643041..5643149, 5643292..5643455)) /locus_tag="TCM_043373" /product="Binding to TOMV RNA 1L (long form) isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23710.1" /inference="similar to AA sequence:ricco:28872.m000243" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:PASA:2:TSA:puevd3b041851t1a2; alternateUTRof:Thecc1EG043373t1; inference alignment:Newbler:10:TSA:cgbaL_g15232t00001" mRNA complement(join(5636898..5637385,5637500..5637561, 5637639..5637734,5638117..5638178,5639172..5639365, 5640836..5640942,5641021..5641259,5643041..5643152, 5643292..5643380)) /locus_tag="TCM_043373" /product="Binding to TOMV RNA 1L (long form) isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23710.1" /inference="similar to AA sequence:ricco:28872.m000243" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06783t00001; alternateUTRof:Thecc1EG043373t1; inference alignment:Newbler:10:TSA:cgbaL_g15232t00001; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc468t5" mRNA complement(join(5636900..5637385,5637500..5637561, 5637639..5637734,5638117..5638178,5639172..5639365, 5640836..5640942,5641021..5641259,5643041..5643151, 5643292..5643384)) /locus_tag="TCM_043373" /product="Binding to TOMV RNA 1L (long form) isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23710.1" /inference="similar to AA sequence:ricco:28872.m000243" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15232t00001; inference alignment:Newbler:10:TSA:cgbaL_g15232t00001" CDS complement(join(5637289..5637385,5637500..5637561, 5637639..5637734,5638117..5638178,5639172..5639365, 5640836..5640942,5641021..5641259,5643041..5643125)) /locus_tag="TCM_043373" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28872.m000243" /codon_start=1 /product="Binding to TOMV RNA 1L (long form) isoform 1" /protein_id="EOY18873.1" /db_xref="TAIR:AT5G04430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TM15" /translation="MESTESSYVSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNA AAGSVIGKGGSTITEFQSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELIL AKLLNELNIEDNDDVEPRTKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQD NNFYGLNDRLVTLTGTLDEQMRAIDLILSKLSEDPHYLQAMHAPFSYAATYNSMSYPS NGAGGKFQNHKEDRSNSVTIGVADGHIGLVLGRGGRNIMEISQLSGARIKISDRGDFM SGTTDRKVTITGSQRAIRQAESMIMQKVAYATDRVMD" CDS complement(join(5637289..5637385,5637500..5637561, 5637639..5637734,5638117..5638178,5639172..5639365, 5640836..5640942,5641021..5641259,5643041..5643125)) /locus_tag="TCM_043373" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28872.m000243" /codon_start=1 /product="Binding to TOMV RNA 1L (long form) isoform 1" /protein_id="EOY18875.1" /db_xref="TAIR:AT5G04430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TM15" /translation="MESTESSYVSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNA AAGSVIGKGGSTITEFQSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELIL AKLLNELNIEDNDDVEPRTKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQD NNFYGLNDRLVTLTGTLDEQMRAIDLILSKLSEDPHYLQAMHAPFSYAATYNSMSYPS NGAGGKFQNHKEDRSNSVTIGVADGHIGLVLGRGGRNIMEISQLSGARIKISDRGDFM SGTTDRKVTITGSQRAIRQAESMIMQKVAYATDRVMD" CDS complement(join(5637289..5637385,5637500..5637561, 5637639..5637734,5638117..5638178,5639172..5639365, 5640836..5640942,5641021..5641259,5643041..5643125)) /locus_tag="TCM_043373" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:28872.m000243" /codon_start=1 /product="Binding to TOMV RNA 1L (long form) isoform 1" /protein_id="EOY18876.1" /db_xref="TAIR:AT5G04430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TM15" /translation="MESTESSYVSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNA AAGSVIGKGGSTITEFQSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELIL AKLLNELNIEDNDDVEPRTKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQD NNFYGLNDRLVTLTGTLDEQMRAIDLILSKLSEDPHYLQAMHAPFSYAATYNSMSYPS NGAGGKFQNHKEDRSNSVTIGVADGHIGLVLGRGGRNIMEISQLSGARIKISDRGDFM SGTTDRKVTITGSQRAIRQAESMIMQKVAYATDRVMD" CDS complement(join(5637289..5637385,5637500..5637561, 5637639..5637734,5638117..5638181,5639172..5639365, 5640836..5640942,5641021..5641259,5643041..5643125)) /locus_tag="TCM_043373" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:28872.m000243" /codon_start=1 /product="Binding to TOMV RNA 1L (long form) isoform 6" /protein_id="EOY18878.1" /db_xref="TAIR:AT5G04430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TM15" /translation="MESTESSYVSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNA AAGSVIGKGGSTITEFQSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELIL AKLLNELNIEDNDDVEPRTKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQD NNFYGLNDRLVTLTGTLDEQMRAIDLILSKLSEDPHYLQAMHAPFSYAAATYNSMSYP SNGAGGKFQNHKEDRSNSVTIGVADGHIGLVLGRGGRNIMEISQLSGARIKISDRGDF MSGTTDRKVTITGSQRAIRQAESMIMQKVAYATDRVMD" CDS complement(join(5637289..5637385,5637500..5637561, 5637639..5637734,5638117..5638241,5639172..5639365, 5640836..5640942,5641021..5641259,5643041..5643125)) /locus_tag="TCM_043373" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Binding to TOMV RNA 1L isoform 2" /protein_id="EOY18874.1" /db_xref="Phytozome:Glyma10g34220.1" /db_xref="TAIR:AT5G04430.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JW99" /translation="MESTESSYVSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNA AAGSVIGKGGSTITEFQSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELIL AKLLNELNIEDNDDVEPRTKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQD NNFYGLNDRLVTLTGTLDEQMRAIDLILSKLSEDPHYLQAMHAPFSYAGIFFSGFHGI PYAYVLPSVATATYNSMSYPSNGAGGKFQNHKEDRSNSVTIGVADGHIGLVLGRGGRN IMEISQLSGARIKISDRGDFMSGTTDRKVTITGSQRAIRQAESMIMQKVAYATDRVMD " mRNA complement(join(5637539..5637734,5638117..5638178, 5638953..5638974,5639180..5639365,5640836..5640942, 5641021..5641259,5643041..5643152,5643292..5643370)) /locus_tag="TCM_043373" /product="Binding to TOMV RNA 1L (long form) isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23710.1" /inference="similar to AA sequence:Phytozome:Glyma10g34220.2" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc428t6; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc468t5; inference alignment:Newbler:10:TSA:cgbaL_g15232t00001" CDS complement(join(5637627..5637734,5638117..5638241, 5639172..5639365,5640836..5640942,5641021..5641259, 5643041..5643125)) /locus_tag="TCM_043373" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Binding to TOMV RNA 1L (long form) isoform 5" /protein_id="EOY18877.1" /db_xref="Phytozome:Glyma10g34220.1" /db_xref="TAIR:AT5G04430.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JW99" /translation="MESTESSYVSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNA AAGSVIGKGGSTITEFQSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELIL AKLLNELNIEDNDDVEPRTKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQD NNFYGLNDRLVTLTGTLDEQMRAIDLILSKLSEDPHYLQAMHAPFSYAGIFFSGFHGI PYAYVLPSVATATYNSMSYPSNGAGGKFQNHKEDRSNSVTIGVADGHIGLVLGRGGRN IMEISQVCK" CDS complement(join(5638161..5638178,5638953..5638974, 5639180..5639365,5640836..5640942,5641021..5641259, 5643041..5643125)) /locus_tag="TCM_043373" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Binding to TOMV RNA 1L (long form) isoform 7" /protein_id="EOY18879.1" /db_xref="Phytozome:Glyma10g34220.2" /db_xref="TAIR:AT5G04430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TM15" /translation="MESTESSYVSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNA AAGSVIGKGGSTITEFQSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELIL AKLLNELNIEDNDDVEPRTKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQD NNFYGLNDRLVTLTGTLDEQMRAIDLILSKLSEDPHYLQAMHAPFSLKLGYQHRLTIQ " mobile_element 5645024..5648193 /note="source:CACAO_M_E71405_F316_scaffold_10 4794 7992" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5648951..5650263) /note="source:INTACT59_F126_scaffold_9-int 13681 14944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5649125..5651235 /note="source:INTACT726_F314_scaffold_5-int 2161 3426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5650763..5656462 /note="source:CACAO_M_S_E16721_F36_scaffold_2 6017 11727" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5656463..5659353) /note="source:CACAO_M_S_E145473_F83_scaffold_10 1 2891" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5659354..5660066 /note="source:CACAO_M_S_E16721_F36_scaffold_2 11723 12433" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5660063..5660241 /note="source:INTACT726_F314_scaffold_5-int 13724 13899" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5662016..5666404 /locus_tag="TCM_043375" /note="dbxref CacaoGD:Thecc1EG043375" mRNA join(5662016..5662279,5662633..5664000,5664142..5664245, 5665484..5666404) /locus_tag="TCM_043375" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3119t1" CDS join(5662127..5662279,5662633..5664000,5664142..5664245, 5665484..5665622) /locus_tag="TCM_043375" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNA3" /translation="MARMEKPVLAEDSLSESEEENAVSESENSQQLDEETTSFVQRKL HQLEYENVDNKQNCNIENLQVIGVDLLSKIQNLENGFARAFTESKISEFPVGNIEMCK LVAELDEQIQLCLTELKQLCTLNSFANPKGTCGNDGLGILKSSDSISQKQQLSSLYQE DSDLVKELSAKILEMEKLKSDNLLKENELEALRLHQKDLETQLSSVEKEKRQLEENIE IMRREVVVTAKFLDDLRSEMMDLNSNMDSQISVNKILAKKSSELENGKQAVEVHLSER LCDLEEQLMYVTDERESFCLELQTPESQAMNFKDEIMRRLEDEMEAQKVDMGQKMEQM KRQLSEVQEECECLKIENLKHIEEYNMLQKENGELIKQKMELHVHCMVWEAELKESEK VFSNILNKVDNLQRENQLLEEEVLAQLQKKLLLQDEVLALKEAISEAKFENEMLEASF VMLSRDYEELTAESSLFVQKIYSSCKCRKIALEEALGTQEALLENELAQISRENRIQV DNKQNCNTESPQFIGVQLAEGLEANDMYKFQLKSLLSKDVGIHLDVPENSAGEVAAGK DRRECKVSTLEVEMSAMYQIC" mobile_element complement(5666443..5668281) /note="source:CACAO_on_SS_E42_scaffold_2 792 2653" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5668287..5669874 /note="source:INTACT700_F304_scaffold_7-int 6 1551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5670965..5671200 /note="source:CACAO_on_E205_scaffold_7 4801 5027" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5671401..5673142 /note="source:CACAO_M_S_E37995_F197_scaffold_4 1929 3637" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5673243..5674977 /note="source:CACAO_M_S_E51603_F76_scaffold_4 3656 5397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5674978..5675029 /note="source:CACAO_M_S_E37995_F197_scaffold_4 293 324" /mobile_element_type="retrotransposon:LTR/Copia" gene 5675602..5676206 /locus_tag="TCM_043377" /note="dbxref CacaoGD:Thecc1EG043377" mRNA 5675602..5676206 /locus_tag="TCM_043377" /product="Histone superfamily protein" /inference="alignment:exonerate- protein:2:ricco:28872.m000241.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041892t1" /inference="similar to AA sequence:ricco:29589.m001271" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4373t1" CDS 5675630..5676061 /locus_tag="TCM_043377" /note="dbxref ricco:29589.m001271; paralog of Thecc1EG041892t1" /codon_start=1 /product="Histone superfamily protein" /protein_id="EOY18881.1" /db_xref="TAIR:AT3G45980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65818" /translation="MAPKAEKKLAEKKPAAVAEKAPAAEKKPRAEKKIPKESGSTADK KKKRAKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARY NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS" gene 5676366..5683330 /locus_tag="TCM_043378" /note="dbxref CacaoGD:Thecc1EG043378" mRNA join(5676366..5676877,5677613..5677803,5678162..5678207, 5679924..5680006,5680101..5680217,5682556..5683330) /locus_tag="TCM_043378" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03030.1" /inference="similar to AA sequence:TAIR:AT5G04440.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07223t00001" CDS join(5676385..5676877,5677613..5677803,5678162..5678207, 5679924..5680006,5680101..5680217,5682556..5682627) /locus_tag="TCM_043378" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18882.1" /db_xref="TAIR:AT5G04440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q500X2" /translation="MYDLSLNERTNLILILKFNFLSLFLISHYYSEHVSPTCAVVISY DTPTAETTLASLLSLKGKTSVRSFFPKYLLSLSLLRSREPFSDVVFNMALGSCSFNPT RLTSLPFPSKNAFKTAKNPLYMSTASFKLLCVRASAWNSASKARFVARRKESLSVRQL KRPLIEYMRLPASQYSVLDAERIERIDDNTFRCYVYRFKFFNFEVCPVLLVRVEEQPN GCCIKLLSCKLDGSPIVVAQNDKFDACMVNQISCDTNRSGSLVQELTSDAVIEVSIEV PFAFRPIPLGMIESTGTQVLEQILRLMLPRFMAQLVKDYQAWASGDASRQPLGTGEI" mobile_element 5687459..5688155 /note="source:INTACT135F_F90_scaffold_2-int 12895 13997" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5688927..5689038 /note="source:CACAO_M_E49145_F369_scaffold_6 1215 1279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5688946..5689025) /note="source:CACAO_M_E12463_F12_scaffold_3 4542 4622" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5690460..5690552) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3176 3280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5692150..5692225 /note="source:INTACT296_F13_scaffold_9-int 13189 13268" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5699157..5727685 /locus_tag="TCM_043382" /note="dbxref CacaoGD:Thecc1EG043382" mRNA join(5699157..5699500,5699640..5701049,5702451..5702569, 5703218..5703841,5704369..5704675,5705188..5705353, 5705476..5705578,5705710..5706346,5727478..5727685) /locus_tag="TCM_043382" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s03010.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s03010.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc255t2" CDS join(5699886..5701049,5702451..5702569,5703218..5703841, 5704369..5704675,5705188..5705353,5705476..5705578, 5705710..5705827) /locus_tag="TCM_043382" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY18883.1" /db_xref="Phytozome:POPTR_0008s03010.1" /db_xref="TAIR:AT5G04460.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CA54" /translation="MTDFQPLQQKPESQNDARAEFERGLEELMRGHLDDCMPFASCSS NRNPDDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMMTTIE RRNRESELMALAGLHTVSMLDSSFLRESQSPTSRRQGGNVERPSTQASAILQMWRELE DEHLLNRARERVRERLRQRRNADSNATISSTTLSESRGSENHGSVGDASESENEYGPW SHDQGVSQNDRGDNNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVTQRAGS PRAEWLGETERERVRIVREWVQMTSQQRGVRGGRREDQAATIGAEGDRVREGSVADHD EGQPEHIRRDLLRLRGRQAVIDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLR GRFLRNERPVEEERPPSMAASELIQLRQRHTVSGLREGFRNRLETIVRGQASSSSETT SSNVINDSRNEHSQTNTLQDTQRENNEQTQSRSLENDITRLPNQTGTVSNMVVESINW QENANQGGNWREPTTNDERGNWQQPTYAQYNEWREGNAEDMDTNWQESSVGEYHQENL GNVNGEESHPQEARRVWREDGSREAVDNWSEGPSDPPRARRAIPVRRFNRFHPPEDDN VYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRSPIDWDLHRNLPTPASPE HDQEQQRDETNDDQNDAISRPSLVLPSPPVPPPQPLWHQDLHHTSWSRHSMHRSEIEW EMINDLRADMARLQQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEKGLSAE TSEDGSKWGHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI VEVIRAYSIL" mobile_element complement(5706367..5706450) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3227 3298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5709249..5710548) /note="source:CACAO_M_E56252_F15_scaffold_8 1 2221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5714391..5727231) /note="source:CACAO_M_E85180_F12_scaffold_10 1 24520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5728115..5729269) /note="source:CACAO_M_E5627_F4_scaffold_2 18331 19492" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5729354..5729429) /note="source:INTACT515_F237_scaffold_9-int 1008 1091" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5729389..5729938) /note="source:scaffold_9_CACTA_0931 93 645" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5729933..5730093 /note="source:INTACT242_F12_scaffold_1-int 1772 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5730041..5730686) /note="source:CACAO_M_E13038_F22_scaffold_3 13530 14149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5730594..5730844 /note="source:CACAO_M_E35674_F13_scaffold_5 3772 4019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5731146..5731972 /note="source:CACAO_M_E35674_F13_scaffold_5 6941 7761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5733635..5733730) /note="source:scaffold_9_CACTA_0931 1 97" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5738567..5738639) /note="source:CACAO_M_E11059_F369_scaffold_2 2659 2733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5739899..5740678 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5746121..5747084) /note="source:CACAO_M_S_E14932_F233_scaffold_2 1 992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5747010..5747106 /note="source:INTACT145_F153_scaffold_5-int 2339 2441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5749820..5749885) /note="source:CACAO_M_E47_F305_scaffold_1 1304 1370" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5750941..>5759559) /locus_tag="TCM_043383" /note="dbxref CacaoGD:Thecc1EG043383" mRNA complement(join(5750941..5751043,5758781..>5759559)) /locus_tag="TCM_043383" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element complement(5751238..5754199) /note="source:CACAO_M_E85175_F33_scaffold_10 1 2962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5755772..5756116) /note="source:CACAO_M_E52714_F305_scaffold_8 2284 2604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5756054..5756185) /note="source:scaffold_8_CACTA_0860 11573 11708" /mobile_element_type="transposon:TIR/CACTA" CDS complement(5759298..>5759558) /locus_tag="TCM_043383" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18884.1" /translation="KKKLEIYKKNYVESSFKVNYVDEKKSLNIFCGTKKKNHGFNNFD AMKKKRRNLLLGGKKYHLKHEWSVCWKEIVIVMTFSPIVASA" mobile_element 5760449..5760506 /note="source:INTACT409F_F47_scaffold_4-int 15748 15805" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5760507..5761343) /note="source:CACAO_M_E5326_F22_scaffold_2 21805 22673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5761741..5762533 /note="source:INTACT409F_F47_scaffold_4-int 17308 18066" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5762195..5762721 /note="source:INTACT1373F_F385_scaffold_8-int 16301 16868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5762522..5763347) /note="source:CACAO_M_E5326_F22_scaffold_2 19850 20662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5763349..5777067) /note="source:INTACT701_F305_scaffold_10-int 1 13719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5777070..5777104) /note="source:INTACT701_F305_scaffold_10-int 1 35" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5779340..5780753) /note="source:CACAO_M_E72867_F9_scaffold_10 21600 23022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5784753..5785436) /note="source:CACAO_M_S_E84261_F4_scaffold_6 3 704" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5785560..5785845 /note="source:INTACT1784F_F24_scaffold_10-int 1 257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5787153..5788226 /note="source:INTACT690_F13_scaffold_1-int 11368 12441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5789919..5791366) /note="source:CACAO_M_E43428_F369_scaffold_5 9003 10427" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5794213..5795544 /note="source:CACAO_M_E5429_F369_scaffold_2 9105 10507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5797473..5797557) /note="source:CACAO_M_E58148_F12_scaffold_9 10858 10948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5797485..5797558 /note="source:CACAO_M_E35511_F5_scaffold_5 2259 2334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5805158..5807410) /note="source:CACAO_M_S_E145445_F22_scaffold_10 10432 12684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5807511..5817941) /note="source:CACAO_M_S_E145445_F22_scaffold_10 1 10431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5820070..5820104) /note="source:CACAO_M_S_E64972_F12_scaffold_5 3217 3251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5821780..5821834 /note="source:CACAO_M_S_E4413_F3_scaffold_1 270 323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5823066..5823847) /note="source:CACAO_M_E85156_F322_scaffold_10 1920 2701" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5823627..6681562 /locus_tag="TCM_043384" /note="dbxref CacaoGD:Thecc1EG043384" mRNA join(5823627..5823838,6629319..6629369,6680196..6681562) /locus_tag="TCM_043384" /product="DNA/RNA polymerases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400016946.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035772t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc4Loc2275t5" mobile_element complement(5823948..5825866) /note="source:CACAO_M_E85156_F322_scaffold_10 1 1919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5825867..5826070) /note="source:CACAO_M_E5627_F4_scaffold_2 18332 18548" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5825867..5825905) /note="source:CACAO_M_S_E119615_F3_scaffold_9 221 262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5829706..5830305) /note="source:CACAO_M_S_E119160_F14_scaffold_9 12760 13359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5830528..5837432 /note="source:INTACT224_F176_scaffold_8-int 4847 11754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5831132..5838034) /note="source:INTACT223_F175_scaffold_5-int 1028 8042" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5838859..5839886) /note="source:INTACT223_F175_scaffold_5-int 6208 7245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5842146..5842218) /note="source:INTACT498_F231_scaffold_5-int 10361 10436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5848507..5848605) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3221 3307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5848533..5848611 /note="source:scaffold_1_CACTA_0011 7469 7546" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5850557..5851334 /note="source:INTACT135F_F90_scaffold_2-int 13293 14003" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5851713..5851750 /note="source:CACAO_M_E33282_F13_scaffold_4 10251 10289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5851720..5852069) /note="source:INTACT695_F301_scaffold_5-int 870 1220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5852072..5854827) /note="source:CACAO_M_S_E6055_F310_scaffold_2 10309 13096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5854820..5857123 /note="source:INTACT713_F309_scaffold_9-int 1374 3570" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5859648..5882366) /locus_tag="TCM_043387" /note="dbxref CacaoGD:Thecc1EG043387" mRNA complement(join(5859648..5859896,5868546..5869346, 5869716..5869852,5870006..5870098,5870307..5874167, 5874771..5874939,5875023..5875060,5875658..5875780, 5875882..5876118,5877189..5877348,5882014..5882366)) /locus_tag="TCM_043387" /product="F-box and Leucine Rich Repeat domains containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02980.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02980.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc332t10" mobile_element 5864187..5865014 /note="source:INTACT105_F2_scaffold_2-int 1 815" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(5869109..5869346,5869716..5869852, 5870006..5870098,5870307..5874167,5874771..5874939, 5875023..5875060,5875658..5875780,5875882..5876118, 5877189..5877269)) /locus_tag="TCM_043387" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="F-box and Leucine Rich Repeat domains containing protein, putative isoform 1" /protein_id="EOY18886.1" /db_xref="Phytozome:POPTR_0008s02980.1" /db_xref="TAIR:AT1G22060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNA3" /translation="MFRLHKQKSDKSGERFDFKFSSFQALQVILIQFWIIEFLKVPKG WDKLFVSIISVDTGKTITKSSKASVRNGNCRWAEAFSESIWIVRGDSSEVIDECLFKL VVAMGSSRSGFLGEATINLASYISSKSTIPLSLPLKKCNHGTVLQVKIQCLTPREKLR DEQWNHTDSYMEDGSLEYDELENKSDVSDSTFTRSVGSSSSNHLEGTIHPGEISSREP SFSASDSRNSFDSLDGSFNRENYSPQNGIMNSLIGRQDSTGSQTSSPRGSYSLNDSSR SNHSSYTPKVSTSGSHPHNHREDLNRVSRLVPSSPLRNTGSSKDFLEAAEITIGELRA EARMWEQNARKLMTDLENLRRELSDQSKHQKLLEVALSTSQAECDSLKQEVEQVKILL EESQMKQGAADNLKFQSKTTENVQKELEDEIKFQSEENANLALQLKKTQESNIELVSI LQELEETIEKQKVEMNNLSRTKSEFEELGKDDFGFEESSQINAGKQVLTNQTRKSSDS DRESGIVEHQRRDLHAENRNLELQFQQLQESHKNLESTILFLKKSLEEKNHEMEIEQG LRSQSLMDCEAEWRGKLAEKEEKITNLEVKLSEALDGQGLKEMGSGNEGNSNLIREIE ALRLKVQELERDCNELTDENLELLFKLKESSKDHSATSNSLLPDHPGKNSPSRHKLEV TSCNYEDELNKKTPTEVHSADHLHFQSVVLGNRCAHLEPQLEAFKDKASYLDGELSEC RARAEEQEIEIVALQQQLKHYQQVEIESKDQPAHAFTESRISESTAAVEMSKLLAELD EQIQLSLGDIKRLYTLKSHANPHGICGSNDSQILKSTDLVSQKQQVEIILNNFAQLKQ FFREKIAVSDDEYYKEAKDSAVSTDDILDKLEGFKLKELNSPCKEDSDLGKELSAKIS EIEKLKSENLLKEDELEALRHQQKELEAQVSSVQTEKSQLEENIEIMLREGAVTAKCL DDLRTEIVLLNSNMDSQISANKILVKKSSELESGKQELEVHLSELEEENVQLSERICG LEAQLRYLTDERESHRLELQNSESQAMNFKEEIKRLENEMEAQKVDMRQKMDEMQKRW LEVQEECKYLKIANPKLQATTENLIEECSMLQKANGELRKQKMELHEHCAVLEAELKE SEKVFSNMVNEVEALEEKYSMMLEEIASKEKALNLELEVLLQENKKQKEKLVLEESLL NQRYLEKTVEVDNLQREVAHLTEQISATQDVKEKTASEAVLEVSHLRADKAMLEAALQ DAQGKLKLSESKLNAMQVECETELQGLKEELAAAKQKQEILMADHEKLLDLLEDVKSN EDKLKGTVRGLELKLKASEYQNQQLVEEISSLKVQLQKTALLQDEILALKKTISETKF ENERLEASFQMLSRDYEELKVERTLFVQKISNSQEAVSDLEDCRRRKVALEEKVLRLQ GDLTAKEAMGTQEAALKNELAQIRRENSQFQRKIKYLEEEKEECLKKTQALEDELKQI KQDQCESKNSIEENNNLLSSEKLFTGINQVQHHLEENHTQIDKSQNCNNETSQDKGVD LLSKIQNLDNELAEALEANDMYKNQLKSLLSKEVSYRSAGPEKSTGEGAARKDGCECK ASSALETELKELRERYFQMSLKYAEVEDQREQLVMQLKAASGRKRWFS" mRNA complement(join(<5869320..5869346,5870006..5870098, 5870307..5874167,5874771..5874939,5875023..5875060, 5875658..5875780,5875882..5876224)) /locus_tag="TCM_043387" /product="F-box and Leucine Rich Repeat domains containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02980.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02980.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc639t1; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8150t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc332t10" CDS complement(join(<5869320..5869346,5870006..5870098, 5870307..5874167,5874771..5874939,5875023..5875060, 5875658..5875780,5875882..5875884)) /locus_tag="TCM_043387" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="F-box and Leucine Rich Repeat domains containing protein, putative isoform 2" /protein_id="EOY18887.1" /db_xref="Phytozome:POPTR_0008s02980.1" /translation="MGSSRSGFLGEATINLASYISSKSTIPLSLPLKKCNHGTVLQVK IQCLTPREKLRDEQWNHTDSYMEDGSLEYDELENKSDVSDSTFTRSVGSSSSNHLEGT IHPGEISSREPSFSASDSRNSFDSLDGSFNRENYSPQNGIMNSLIGRQDSTGSQTSSP RGSYSLNDSSRSNHSSYTPKVSTSGSHPHNHREDLNRVSRLVPSSPLRNTGSSKDFLE AAEITIGELRAEARMWEQNARKLMTDLENLRRELSDQSKHQKLLEVALSTSQAECDSL KQEVEQVKILLEESQMKQGAADNLKFQSKTTENVQKELEDEIKFQSEENANLALQLKK TQESNIELVSILQELEETIEKQKVEMNNLSRTKSEFEELGKDDFGFEESSQINAGKQV LTNQTRKSSDSDRESGIVEHQRRDLHAENRNLELQFQQLQESHKNLESTILFLKKSLE EKNHEMEIEQGLRSQSLMDCEAEWRGKLAEKEEKITNLEVKLSEALDGQGLKEMGSGN EGNSNLIREIEALRLKVQELERDCNELTDENLELLFKLKESSKDHSATSNSLLPDHPG KNSPSRHKLEVTSCNYEDELNKKTPTEVHSADHLHFQSVVLGNRCAHLEPQLEAFKDK ASYLDGELSECRARAEEQEIEIVALQQQLKHYQQVEIESKDQPAHAFTESRISESTAA VEMSKLLAELDEQIQLSLGDIKRLYTLKSHANPHGICGSNDSQILKSTDLVSQKQQVE IILNNFAQLKQFFREKIAVSDDEYYKEAKDSAVSTDDILDKLEGFKLKELNSPCKEDS DLGKELSAKISEIEKLKSENLLKEDELEALRHQQKELEAQVSSVQTEKSQLEENIEIM LREGAVTAKCLDDLRTEIVLLNSNMDSQISANKILVKKSSELESGKQELEVHLSELEE ENVQLSERICGLEAQLRYLTDERESHRLELQNSESQAMNFKEEIKRLENEMEAQKVDM RQKMDEMQKRWLEVQEECKYLKIANPKLQATTENLIEECSMLQKANGELRKQKMELHE HCAVLEAELKESEKVFSNMVNEVEALEEKYSMMLEEIASKEKALNLELEVLLQENKKQ KEKLVLEESLLNQRYLEKTVEVDNLQREVAHLTEQISATQDVKEKTASEAVLEVSHLR ADKAMLEAALQDAQGKLKLSESKLNAMQVECETELQGLKEELAAAKQKQEILMADHEK LLDLLEDVKSNEDKLKGTVRGLELKLKASEYQNQQLVEEISSLKVQLQKTALLQDEIL ALKKTISETKFENERLEASFQMLSRDYEELKVERTLFVQKISNSQEAVSDLEDCRRRK VALEEKVLRLQGDLTAKEAMGTQEAALKNELAQIRRENSQFQRKIKYLEEEKEECLKK TQALEDELKQIKQDQCESKNSIEENNNLLSSEKLFTGINQVQHHLEENHTQFVVKGSK LP" mRNA complement(join(<5870009..5870098,5870307..5874167, 5874771..5874939,5875023..5875060,5875658..5875780, 5875882..5876079,5877189..5877337)) /locus_tag="TCM_043387" /product="F-box and Leucine Rich Repeat domains containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02980.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02980.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc332t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc332t10; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8150t5" CDS complement(join(<5870009..5870098,5870307..5874167, 5874771..5874939,5875023..5875060,5875658..5875780, 5875882..5876079,5877189..5877269)) /locus_tag="TCM_043387" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="F-box and Leucine Rich Repeat domains containing protein, putative isoform 3" /protein_id="EOY18888.1" /db_xref="Phytozome:POPTR_0008s02980.1" /db_xref="TAIR:AT1G22060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNA3" /translation="MFRLHKQKSDKSGERFDFKFSSFQALQVPKGWDKLFVSIISVDT GKTITKSSKASVRNGNCRWAEAFSESIWIVRGDSSEVIDECLFKLVVAMGSSRSGFLG EATINLASYISSKSTIPLSLPLKKCNHGTVLQVKIQCLTPREKLRDEQWNHTDSYMED GSLEYDELENKSDVSDSTFTRSVGSSSSNHLEGTIHPGEISSREPSFSASDSRNSFDS LDGSFNRENYSPQNGIMNSLIGRQDSTGSQTSSPRGSYSLNDSSRSNHSSYTPKVSTS GSHPHNHREDLNRVSRLVPSSPLRNTGSSKDFLEAAEITIGELRAEARMWEQNARKLM TDLENLRRELSDQSKHQKLLEVALSTSQAECDSLKQEVEQVKILLEESQMKQGAADNL KFQSKTTENVQKELEDEIKFQSEENANLALQLKKTQESNIELVSILQELEETIEKQKV EMNNLSRTKSEFEELGKDDFGFEESSQINAGKQVLTNQTRKSSDSDRESGIVEHQRRD LHAENRNLELQFQQLQESHKNLESTILFLKKSLEEKNHEMEIEQGLRSQSLMDCEAEW RGKLAEKEEKITNLEVKLSEALDGQGLKEMGSGNEGNSNLIREIEALRLKVQELERDC NELTDENLELLFKLKESSKDHSATSNSLLPDHPGKNSPSRHKLEVTSCNYEDELNKKT PTEVHSADHLHFQSVVLGNRCAHLEPQLEAFKDKASYLDGELSECRARAEEQEIEIVA LQQQLKHYQQVEIESKDQPAHAFTESRISESTAAVEMSKLLAELDEQIQLSLGDIKRL YTLKSHANPHGICGSNDSQILKSTDLVSQKQQVEIILNNFAQLKQFFREKIAVSDDEY YKEAKDSAVSTDDILDKLEGFKLKELNSPCKEDSDLGKELSAKISEIEKLKSENLLKE DELEALRHQQKELEAQVSSVQTEKSQLEENIEIMLREGAVTAKCLDDLRTEIVLLNSN MDSQISANKILVKKSSELESGKQELEVHLSELEEENVQLSERICGLEAQLRYLTDERE SHRLELQNSESQAMNFKEEIKRLENEMEAQKVDMRQKMDEMQKRWLEVQEECKYLKIA NPKLQATTENLIEECSMLQKANGELRKQKMELHEHCAVLEAELKESEKVFSNMVNEVE ALEEKYSMMLEEIASKEKALNLELEVLLQENKKQKEKLVLEESLLNQRYLEKTVEVDN LQREVAHLTEQISATQDVKEKTASEAVLEVSHLRADKAMLEAALQDAQGKLKLSESKL NAMQVECETELQGLKEELAAAKQKQEILMADHEKLLDLLEDVKSNEDKLKGTVRGLEL KLKASEYQNQQLVEEISSLKVQLQKTALLQDEILALKKTISETKFENERLEASFQMLS RDYEELKVERTLFVQKISNSQEAVSDLEDCRRRKVALEEKVLRLQGDLTAKEAMGTQE AALKNELAQIRRENSQFQRKIKYLEEEKEECLKKTQALEDELKQIKQDQCESKNSIEE NNNLLSSEKLFTGINQVQHHLEENHT" gene 5878613..5887177 /locus_tag="TCM_043388" /note="dbxref CacaoGD:Thecc1EG043388" mRNA join(5878613..5879241,5882047..5882329,5887106..5887177) /locus_tag="TCM_043388" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS join(5879158..5879241,5882047..5882205) /locus_tag="TCM_043388" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18889.1" /translation="MWRGQQPVKARWPFLLTLLRRTTLRLSLRQSDGFWVLHLRNASH NHEPSSNMSAHPSYGHLKRGEIVDIEKLSISRIQSR" mobile_element 5887374..5888986 /note="source:CACAO_M_E59046_F60_scaffold_9 1 1584" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5889450..5890717) /locus_tag="TCM_043390" /note="dbxref CacaoGD:Thecc1EG043390" mRNA complement(join(5889450..5889908,5890013..5890093, 5890361..5890474,5890582..5890717)) /locus_tag="TCM_043390" /product="Non-symbiotic hemoglobin 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400029554" /inference="similar to AA sequence:ricco:28183.m000007" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10627t2_C2" CDS complement(join(5889765..5889908,5890013..5890093, 5890361..5890363)) /locus_tag="TCM_043390" /note="dbxref ricco:28183.m000007" /codon_start=1 /product="Non-symbiotic hemoglobin 2" /protein_id="EOY18890.1" /db_xref="TAIR:AT3G10520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O24521" /translation="MSERVADTTLKYLGSVHLKNGVIGPHFEVVKEALLRTIKEAIGE EKCSDEMSSAWGEAYDQLAAAIKAKMKEEAA" mobile_element 5892647..5895469 /note="source:INTACT604_F25_scaffold_4-int 25 2856" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5896615..5899356) /note="source:CACAO_M_E85149_F73_scaffold_10 1 2742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5900943..5901772 /note="source:CACAO_M_E32900_F13_scaffold_4 2446 3232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5901606..5901801) /note="source:INTACT146F_F14_scaffold_2-int 14020 14211" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5901782..5903345) /note="source:CACAO_M_E52239_F256_scaffold_7 19817 21404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5906007..5906129) /note="source:INTACT731_F12_scaffold_5-int 4404 4520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5907832..5910479 /note="source:INTACT537_F22_scaffold_2-int 1 2644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5910479..5913650 /note="source:INTACT1327F_F381_scaffold_8-int 6069 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5913651..5919967 /note="source:INTACT515_F237_scaffold_9-int 2589 8884" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5919968..5920094 /note="source:CACAO_M_S_E144165_F22_scaffold_10 2 130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5920204..5925465) /note="source:INTACT93_F15_scaffold_3-int 1459 11266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5925728..5933135) /note="source:INTACT93_F15_scaffold_3-int 2246 9651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5934681..5935404 /note="source:INTACT51F_F15_scaffold_1-int 10561 11259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5936832..5942276) /note="source:CACAO_M_S_E145422_F88_scaffold_10 1 5445" /mobile_element_type="retrotransposon:LTR/Copia" gene 5946266..5955047 /locus_tag="TCM_043397" /note="dbxref CacaoGD:Thecc1EG043397" mRNA join(5946266..5949220,5949390..5949687,5953635..5954161, 5954740..5955047) /locus_tag="TCM_043397" /product="Disease resistance protein RPP8" /inference="alignment:exonerate- protein:2:ricco:30143.m001203" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042621t1" /inference="similar to AA sequence:ricco:30143.m001203" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9073t8_C2" CDS 5946439..5949195 /locus_tag="TCM_043397" /note="dbxref ricco:30143.m001203; paralog of Thecc1EG042621t1" /codon_start=1 /product="Disease resistance protein RPP8" /protein_id="EOY18891.1" /db_xref="TAIR:AT5G35450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SR21" /translation="MAEAIVSLAIERITDLLIYEAFCLNDVREEVESIKAELERMKSF LKDVDHKQEQDERLRTRVREIRDLAYDAEDVIDSYILEVAHRGGFHGIIKRFTSLSTH KIGKQVKAIQTKLGDISKTLTTYGISREGEGSNSAAEMQRRLRRSYPHVEEEDVVSLE VSTKDVMDLLMKKADRLHVVSVVGMGGIGKTTLAKKIYNHNDVKRHFDCCAWVFISQQ CMPREVFHGVLIKVLSPSRKEKERIDKLKEHELVEKLYDVLKEKRYLVVLDDIWRCED WVSLKPAFPKGNKGSKLFFTTRNKEVALLADPCSSPIELPLLTDDESWTLFERKAFPE NKMDSHACSKEFERLGKEILKKCGGLPLAIVVLGGLLATKKSCTEWEMVLKNINAHLN KFQQQGCHYGGVNGILALSFNELPFHLKPCFLYFGHYPEDSEISKKELIRLWIAEAFI SQSLEGETLMEDVAEQYLEELTNRCLVQVGRRDHTGAGVKTYRIHDLLRDLCVSKAQE ENFFKIVQLRMNENKNHFLHLTVATISKARRIVVHPSKRYVSLKGKCPNLRSLLLFQD EDLIRLDISNCNNFRFLRVLNLLRKDVLWIIPSEIGNLFHLRYLGLKCAEVVLPRSIV KLKNLHTLYILVKSPGIIPNVLSKLERLRHLLLINWYAFKNWHNIKGCCQVNTLENIE TMKYIRVENLTKNNALLKLTNIRSLGIQFKRPEDVEAMLRSRSFGSDRLRSLRMALEG SIPFPELKQLSHCHHLSKLFLCGRIKEDPSPSHHVLKFLPTSICKLTLFFSHINQDPM PVLEKLPHLRILCLESSSYTGTRMSCSANGFPQLDSIDIKSSNLAEWQIEEGAMPCLR SLHLAFVPGLKMVPEGLRYITSLQEMKLEGMSRSFLKRIQVIDGREGEDFYKVRHVLS IQTI" gene complement(5954779..5962011) /locus_tag="TCM_043398" /note="dbxref CacaoGD:Thecc1EG043398" mRNA complement(join(5954779..5955161,5957792..5958176, 5961935..5962011)) /locus_tag="TCM_043398" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS complement(5957907..5958107) /locus_tag="TCM_043398" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18892.1" /translation="MGKKLRKGKSRKSENGSKTPTFCTWEQIPFVFQDKKFVSLCETG IQVHVIRGAIPRLCTRVLLGLW" gene complement(5965948..5966704) /locus_tag="TCM_043399" /note="dbxref CacaoGD:Thecc1EG043399" mRNA complement(5965948..5966704) /locus_tag="TCM_043399" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02960.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02960.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3196t1" CDS complement(5966114..5966449) /locus_tag="TCM_043399" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18893.1" /db_xref="Phytozome:POPTR_0008s02960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUW5" /translation="MSTDLELFQDLTKIKLPQLKIQSSNGSGAVIQQENNNQDSSNEC TTPTSEESKIPAALKCPPAPKKPKRRTFSCKRKLSDQLQFFEIVNREEVEAYLKAGFD SSKRRCPCT" mobile_element complement(5967223..5967267) /note="source:CACAO_M_S_E32752_F12_scaffold_4 4123 4167" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5971043..5977808 /note="source:CACAO_on_S_E176_scaffold_5 1 6754" /mobile_element_type="transposon:TIR/Mutator" gene complement(5975761..5977151) /locus_tag="TCM_043401" /note="dbxref CacaoGD:Thecc1EG043401" mRNA complement(join(5975761..5976717,5976813..5977151)) /locus_tag="TCM_043401" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022540t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(join(5976548..5976717,5976813..5977017)) /locus_tag="TCM_043401" /note="paralog of Thecc1EG022540t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18894.1" /translation="MFQCWFHDRYEEAVKVTMPLSPWVSKQLSKRFNDAHLLVVKPIN QVEFEVKDWKMDGLVNLSTKTCSCLFTLCLNIEFIVYFSKCKREAIEFYADYYKTTVL VEGYTGSIRLIGHPSEWDIPIM" mobile_element 5977809..5980788 /note="source:CACAO_M_E43479_F273_scaffold_5 1 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5980789..5982435) /note="source:CACAO_on_E193_scaffold_6 1 1649" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5982270..5982651 /note="source:CACAO_Mutator_E1149_scaffold_5 13402 13722" /mobile_element_type="transposon:TIR/Mutator" gene complement(5986028..5998528) /locus_tag="TCM_043403" /note="dbxref CacaoGD:Thecc1EG043403" mRNA complement(join(5986028..5986456,5986567..5986733, 5988005..5988908,5995738..5995908,5998218..5998324)) /locus_tag="TCM_043403" /product="DNA binding, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:27916.m000152" /inference="similar to AA sequence:Phytozome:POPTR_0008s02950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4380t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4380t1" mRNA complement(join(5986160..5986189,5986567..5986733, 5988005..5988908,5995738..5995908,5998218..5998528)) /locus_tag="TCM_043403" /product="DNA binding, putative isoform 2" /inference="similar to AA sequence:Phytozome:POPTR_0008s02950.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc289t9" CDS complement(join(5986174..5986189,5986567..5986733, 5988005..5988908,5995738..5995871)) /locus_tag="TCM_043403" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA binding, putative isoform 2" /protein_id="EOY18896.1" /db_xref="Phytozome:POPTR_0008s02950.1" /db_xref="TAIR:AT3G52170.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUW7" /translation="MHAIKGGWVGQTFALAKCNEQGGKKSRIRRSKEERKAMVESFIR KYQKSNNGNFPSLNLTHKEVGGSFYIIREIVREIIQENKVLGPAKFTEGEQNIDLFLE QNPLGSISAAPKNSLPIQSNGSPFIPSHHEDANDGSVSVSDGHSMGSVYKTFDSGQII NGNFVDVTNGTDKVAIVDLQVTEPLESDKSGKELAAATSKVTQITPDVVVETFPLRPV AKPIDSIDGRSSEVGELNENLDQTETVKVNESLENVSPKLDDINSSEVSNLTDEKEVE NLVDLLLEKNSDLADKKVVENISDPLLESSDCSTRKSAIDEDYNGAALEVSCSNVLTS EINEPSQAIVEEAVNASNGMHPKIDGTDTGSCIGESTTQEAVVVEGQVDLQHVNSQKG SNKTLDRINLSSGL" CDS complement(join(5986348..5986456,5986567..5986733, 5988005..5988908,5995738..5995871)) /locus_tag="TCM_043403" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA binding, putative isoform 1" /protein_id="EOY18895.1" /db_xref="Phytozome:POPTR_0008s02950.1" /db_xref="TAIR:AT3G52170.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUW7" /translation="MHAIKGGWVGQTFALAKCNEQGGKKSRIRRSKEERKAMVESFIR KYQKSNNGNFPSLNLTHKEVGGSFYIIREIVREIIQENKVLGPAKFTEGEQNIDLFLE QNPLGSISAAPKNSLPIQSNGSPFIPSHHEDANDGSVSVSDGHSMGSVYKTFDSGQII NGNFVDVTNGTDKVAIVDLQVTEPLESDKSGKELAAATSKVTQITPDVVVETFPLRPV AKPIDSIDGRSSEVGELNENLDQTETVKVNESLENVSPKLDDINSSEVSNLTDEKEVE NLVDLLLEKNSDLADKKVVENISDPLLESSDCSTRKSAIDEDYNGAALEVSCSNVLTS EINEPSQAIVEEAVNASNGMHPKIDGTDTGSCIGESTTQEAVVVEGQVDLQHVNSQKG SNKTLDRINLESWEGTSKSAAKSETNPLWAIFKSFISAFLKFWSE" gene complement(5998849..6005548) /locus_tag="TCM_043405" /note="dbxref CacaoGD:Thecc1EG043405" mRNA complement(join(5998849..5999893,6000512..6000713, 6000802..6000830,6001289..6001545,6002675..6002880, 6003019..6003115,6003243..6003313,6003478..6003631, 6003741..6003818,6003920..6004030,6004113..6004328, 6005418..6005541)) /locus_tag="TCM_043405" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013826001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043418t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013826001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08875t00001" gene 5999337..6001160 /locus_tag="TCM_043406" /note="dbxref CacaoGD:Thecc1EG043406" mRNA join(5999337..5999738,6000438..6001160) /locus_tag="TCM_043406" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043417t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(join(5999830..5999893,6000512..6000713, 6000802..6000830,6001289..6001545,6002675..6002880, 6003019..6003115,6003243..6003313,6003478..6003631, 6003741..6003818,6003920..6004030,6004113..6004283)) /locus_tag="TCM_043405" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043418t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY18897.1" /db_xref="Phytozome:GSVIVT01013826001" /db_xref="TAIR:AT4G10650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82497" /translation="MASGSIASKLAREIGSIVKKAVSSNRGWYGPHMAAASCAIAQRL PLVDHIVEIRDARIPLSSEYELLRIVPPRPPSKRIVVMNKMDLTNPTQIKEWMRYFEQ QKCISYGVNSHNKDSVKGLLNFIQAQVRELNKADHRFSDAITVMLVGIPNVGKSALAN SLHQIGRISAAEKGKLKHALVSPQPGETKDISSLKIGSHPNIYLLDTPGILPPTIHDA ERCSKLALTGAIRDSLIGLKDLAQYFLAILNLSDQYKNWAKLSTNWGKVSILEHKGEH SSSSKLEMRQRRQYLMDHTQDFMVHDVRRALFDVISSFDGNLECEDDMVKLIEAQFVA LREAFHVQEEMDQNVQDKVAVKLLNLCRTGRLGHYTLDQVPVTHCDCLTSSSDSRRLG ILPTRRLCEKFNDCRPARLVTSLGISPDKLLSERSTVLTSLSVLLYSTTLPFITTNIS SKKLPLEVLLKEQQKGEGHRIELLKSKSR" CDS 6000554..6000760 /locus_tag="TCM_043406" /note="paralog of Thecc1EG043417t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18899.1" /translation="MKGRVVEYSNTLKLVKTVDLSDNNLSGEIPKEVTSLAGLQSLNF SHNLLVGRIPDNIGAMVSLECVDL" mRNA complement(join(6001183..6001545,6002675..6002880, 6003019..6003115,6003243..6003313,6003478..6003631, 6003741..6003818,6003920..6004030,6004113..6004324, 6005418..6005548)) /locus_tag="TCM_043405" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013826001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043418t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013826001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3901t1; inference alignment:Newbler:10:TSA:cgbaB_g08875t00001; inference alignment:Newbler:10:TSA:cgbaP2_g01822t00002" CDS complement(join(6001285..6001545,6002675..6002880, 6003019..6003115,6003243..6003313,6003478..6003631, 6003741..6003818,6003920..6004030,6004113..6004283)) /locus_tag="TCM_043405" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043418t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY18898.1" /db_xref="Phytozome:GSVIVT01013826001" /db_xref="TAIR:AT4G10650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82497" /translation="MASGSIASKLAREIGSIVKKAVSSNRGWYGPHMAAASCAIAQRL PLVDHIVEIRDARIPLSSEYELLRIVPPRPPSKRIVVMNKMDLTNPTQIKEWMRYFEQ QKCISYGVNSHNKDSVKGLLNFIQAQVRELNKADHRFSDAITVMLVGIPNVGKSALAN SLHQIGRISAAEKGKLKHALVSPQPGETKDISSLKIGSHPNIYLLDTPGILPPTIHDA ERCSKLALTGAIRDSLIGLKDLAQYFLAILNLSDQYKNWAKLSTNWGKVSILEHKGEH SSSSKLEMRQRRQYLMDHTQDFMVHDVRRALFDVISSFDGNLECEDDMVKLIEAQFVA LREAFHVQEEMDQNVQDKVAVKLLNLCRTGRLGHYTLDQVPVTHCDCL" gene complement(6005978..6017521) /locus_tag="TCM_043407" /note="dbxref CacaoGD:Thecc1EG043407" mRNA complement(join(6005978..6006201,6007148..6007853, 6007943..6008024,6008137..6008289,6009174..6009343, 6009907..6010095,6010636..6010845,6011006..6011491, 6011637..6011840,6012438..6012758,6012860..6013031, 6013160..6013210,6013417..6013520,6013749..6013835, 6015500..6016309,6017279..6017521)) /locus_tag="TCM_043407" /product="UDP-Glycosyltransferase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02940.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005229t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02940.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc751t7" mRNA complement(join(6006590..6007832,6007943..6008024, 6008137..6008289,6009174..6009343,6009907..6010095, 6010636..6010845,6011006..6011491,6011637..6011840, 6012438..6012758,6012860..6013031,6013160..6013210, 6013417..6013520,6013749..6013835,6015500..6016204)) /locus_tag="TCM_043407" /product="UDP-Glycosyltransferase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02940.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005229t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02940.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8228t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc751t7" mRNA complement(join(6006590..6008024,6008137..6008289, 6009174..6009343,6009907..6010095,6010636..6010845, 6011006..6011491,6011637..6011840,6012438..6012758, 6012860..6013031,6013160..6013210,6013417..6013520, 6013749..6013835,6015500..6016190)) /locus_tag="TCM_043407" /product="UDP-Glycosyltransferase superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02940.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23830.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc751t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc751t7" CDS complement(join(6007467..6007832,6007943..6008024, 6008137..6008289,6009174..6009343,6009907..6010095, 6010636..6010845,6011006..6011491,6011637..6011840, 6012438..6012758,6012860..6013031,6013160..6013210, 6013417..6013520,6013749..6013835,6015500..6016009)) /locus_tag="TCM_043407" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005229t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 3" /protein_id="EOY18902.1" /db_xref="Phytozome:POPTR_0008s02940.1" /db_xref="TAIR:AT5G04480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940Y7" /translation="MGRNSSPPILDGNGNENGKNKNSDNNNDDDQGFYSIRDRLPFKR NPIHTRDRTKQSSLLDRPLVRNRPRFNRKGFLLFPLRGIHLFYFLIFFSVFAFAMASM LMQSSIAAVVFRQGGERGWRKSVREGLRLGSTLKFMPAGMSRWVAEGGGLDRMRSTAR IGVRGPRLALILGNMKKDPQSLMMLTVVKSLQRLGYVIKIYAVANGKAHAMWEHISGQ ISFLGPEQFVHIDWSIFEGVIADSLEAKEAISSLMQEPFDTVPLIWIIQEDTLATRLP VYEEMGLEHLVSHWKSAFTRANVIVFPDFTLPMLYSMLDTGNFLVIPGSPVDVWGAES YSKTHAKHQLRKDNGFSMDDMVVLVVGSSFFYDELSWDYAVAMHTIGPLLMRYTRRND AGGSFKFIFLSGNSTDGYHDALQQVASRLGLTQGSVRHYGLDGDVNGVLLMADIVLYG TSQEEQGFPSLIIRAMTFGIPVITPDFPIMKKYVVDGTHGVFFPKHQPDALLRAFSLL ISNGRLSRFAQTVASSGRLLAKNILASECITGYASLLENLLNFPSDVLLPAPVSQLRL GSWEWNVFGMEIEHGTGDISRYFSVVYALEEEFTKHTISSDISQYGAEIQDQDIPTEQ DWDIVTEIENFEDYERLEMDEVEERMERNPGVWDDIYRNARRSEKLKFEANERDEGEL ERTGQPVCIYEIYSGAGAWPFLHHGSLYRGLSLSRKARRLRSDDVDAVGRLPVLNDTH YRDLLCEVGGMFSIANRVDNIHKRPWIGFQSWRAAGRKVSLSTRAEEVLEETIQGSKR DVMYFWARLDIDGGGAGTNDALTFWSMCDLLNAGHCRTAFESAFRKMYILPSDTEALP PMPKDDGHWSALHSWVMPTTSFLEFVMFSRMFVDSLDALHTNSGEVNLCLLGSSELEV LELLVNVWAYHSGRRMVYIEPHSGLLEEQHPVDQRKEFMWARYFNFTLLKSMDEDLAE AADDEDHPRKMWLWPLTGEVHWQGIYEREREERYRLKMDKKRKTKEKLFERMKNGYKQ RSLG" CDS complement(join(6007467..6007853,6007943..6008024, 6008137..6008289,6009174..6009343,6009907..6010095, 6010636..6010845,6011006..6011491,6011637..6011840, 6012438..6012758,6012860..6013031,6013160..6013210, 6013417..6013520,6013749..6013835,6015500..6016009)) /locus_tag="TCM_043407" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005229t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 1" /protein_id="EOY18900.1" /db_xref="Phytozome:POPTR_0008s02940.1" /db_xref="TAIR:AT5G04480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940Y7" /translation="MGRNSSPPILDGNGNENGKNKNSDNNNDDDQGFYSIRDRLPFKR NPIHTRDRTKQSSLLDRPLVRNRPRFNRKGFLLFPLRGIHLFYFLIFFSVFAFAMASM LMQSSIAAVVFRQGGERGWRKSVREGLRLGSTLKFMPAGMSRWVAEGGGLDRMRSTAR IGVRGPRLALILGNMKKDPQSLMMLTVVKSLQRLGYVIKIYAVANGKAHAMWEHISGQ ISFLGPEQFVHIDWSIFEGVIADSLEAKEAISSLMQEPFDTVPLIWIIQEDTLATRLP VYEEMGLEHLVSHWKSAFTRANVIVFPDFTLPMLYSMLDTGNFLVIPGSPVDVWGAES YSKTHAKHQLRKDNGFSMDDMVVLVVGSSFFYDELSWDYAVAMHTIGPLLMRYTRRND AGGSFKFIFLSGNSTDGYHDALQQVASRLGLTQGSVRHYGLDGDVNGVLLMADIVLYG TSQEEQGFPSLIIRAMTFGIPVITPDFPIMKKYVVDGTHGVFFPKHQPDALLRAFSLL ISNGRLSRFAQTVASSGRLLAKNILASECITGYASLLENLLNFPSDVLLPAPVSQLRL GSWEWNVFGMEIEHGTGDISRYFSVVYALEEEFTKHTISSDISQYGAEIQDQDIPTEQ DWDIVTEIENFEDYERLEMDEVEERMERNPGVWDDIYRNARRSEKLKFEANERDEGEL ERTGQPVCIYEIYSGAGAWPFLHHGSLYRGLSLSRKARRLRSDDVDAVGRLPVLNDTH YRDLLCEVGGMFSIANRVDNIHKRPWIGFQSWRAAGRKVSLSTRAEEVLEETIQGSKR DVMYFWARLDIDGGGAGTNDALTFWSMCDLLNAGHCRTAFESAFRKMYILPSDTEALP PMPKDDGHWSALHSWVMPTTSFLEFVMFSRMFVDSLDALHTNSGEVNLCLLGSSELEK KHCYCQVLELLVNVWAYHSGRRMVYIEPHSGLLEEQHPVDQRKEFMWARYFNFTLLKS MDEDLAEAADDEDHPRKMWLWPLTGEVHWQGIYEREREERYRLKMDKKRKTKEKLFER MKNGYKQRSLG" mRNA complement(join(6007687..6007853,6007943..6008024, 6008137..6008289,6009174..6009343,6009907..6010090, 6010636..6010845,6011006..6011491,6011637..6011840, 6012438..6012758,6012860..6013031,6013160..6013210, 6013417..6013520,6013749..6013835,6015500..6016178)) /locus_tag="TCM_043407" /product="UDP-Glycosyltransferase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02940.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23830.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc788t1_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc751t7" CDS complement(join(6007772..6008024,6008137..6008289, 6009174..6009343,6009907..6010095,6010636..6010845, 6011006..6011491,6011637..6011840,6012438..6012758, 6012860..6013031,6013160..6013210,6013417..6013520, 6013749..6013835,6015500..6016009)) /locus_tag="TCM_043407" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 4" /protein_id="EOY18903.1" /db_xref="Phytozome:POPTR_0010s23830.2" /db_xref="TAIR:AT5G04480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUW8" /translation="MGRNSSPPILDGNGNENGKNKNSDNNNDDDQGFYSIRDRLPFKR NPIHTRDRTKQSSLLDRPLVRNRPRFNRKGFLLFPLRGIHLFYFLIFFSVFAFAMASM LMQSSIAAVVFRQGGERGWRKSVREGLRLGSTLKFMPAGMSRWVAEGGGLDRMRSTAR IGVRGPRLALILGNMKKDPQSLMMLTVVKSLQRLGYVIKIYAVANGKAHAMWEHISGQ ISFLGPEQFVHIDWSIFEGVIADSLEAKEAISSLMQEPFDTVPLIWIIQEDTLATRLP VYEEMGLEHLVSHWKSAFTRANVIVFPDFTLPMLYSMLDTGNFLVIPGSPVDVWGAES YSKTHAKHQLRKDNGFSMDDMVVLVVGSSFFYDELSWDYAVAMHTIGPLLMRYTRRND AGGSFKFIFLSGNSTDGYHDALQQVASRLGLTQGSVRHYGLDGDVNGVLLMADIVLYG TSQEEQGFPSLIIRAMTFGIPVITPDFPIMKKYVVDGTHGVFFPKHQPDALLRAFSLL ISNGRLSRFAQTVASSGRLLAKNILASECITGYASLLENLLNFPSDVLLPAPVSQLRL GSWEWNVFGMEIEHGTGDISRYFSVVYALEEEFTKHTISSDISQYGAEIQDQDIPTEQ DWDIVTEIENFEDYERLEMDEVEERMERNPGVWDDIYRNARRSEKLKFEANERDEGEL ERTGQPVCIYEIYSGAGAWPFLHHGSLYRGLSLSRKARRLRSDDVDAVGRLPVLNDTH YRDLLCEVGGMFSIANRVDNIHKRPWIGFQSWRAAGRKVSLSTRAEEVLEETIQGSKR DVMYFWARLDIDGGGAGTNDALTFWSMCDLLNAGHCRTAFESAFRKMYILPSDTEALP PMPKDDGHWSALHSWVMPTTSFLEFVMFSRMFVDSLDALHTNSGEVNLCLLGSSELEV SYVVPITSVGFSESIIITVLFFVYLIIGRKNTVTVRYWNSWSMSGLTIVGGGWST" mRNA complement(join(6009319..6009343,6009915..6010095, 6010636..6010845,6011006..6011491,6011637..6011840, 6012438..6012758,6012860..6013031,6013160..6013210, 6013417..6013520,6013749..6013835,6015500..6016178)) /locus_tag="TCM_043407" /product="UDP-Glycosyltransferase superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02940.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s23830.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc788t4_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc751t7" CDS complement(join(6009321..6009343,6009915..6010095, 6010636..6010845,6011006..6011491,6011637..6011840, 6012438..6012758,6012860..6013031,6013160..6013210, 6013417..6013520,6013749..6013835,6015500..6016009)) /locus_tag="TCM_043407" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 5" /protein_id="EOY18904.1" /db_xref="Phytozome:POPTR_0010s23830.2" /db_xref="TAIR:AT5G04480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940Y7" /translation="MGRNSSPPILDGNGNENGKNKNSDNNNDDDQGFYSIRDRLPFKR NPIHTRDRTKQSSLLDRPLVRNRPRFNRKGFLLFPLRGIHLFYFLIFFSVFAFAMASM LMQSSIAAVVFRQGGERGWRKSVREGLRLGSTLKFMPAGMSRWVAEGGGLDRMRSTAR IGVRGPRLALILGNMKKDPQSLMMLTVVKSLQRLGYVIKIYAVANGKAHAMWEHISGQ ISFLGPEQFVHIDWSIFEGVIADSLEAKEAISSLMQEPFDTVPLIWIIQEDTLATRLP VYEEMGLEHLVSHWKSAFTRANVIVFPDFTLPMLYSMLDTGNFLVIPGSPVDVWGAES YSKTHAKHQLRKDNGFSMDDMVVLVVGSSFFYDELSWDYAVAMHTIGPLLMRYTRRND AGGSFKFIFLSGNSTDGYHDALQQVASRLGLTQGSVRHYGLDGDVNGVLLMADIVLYG TSQEEQGFPSLIIRAMTFGIPVITPDFPIMKKYVVDGTHGVFFPKHQPDALLRAFSLL ISNGRLSRFAQTVASSGRLLAKNILASECITGYASLLENLLNFPSDVLLPAPVSQLRL GSWEWNVFGMEIEHGTGDISRYFSVVYALEEEFTKHTISSDISQYGAEIQDQDIPTEQ DWDIVTEIENFEDYERLEMDEVEERMERNPGVWDDIYRNARRSEKLKFEANERDEGEL ERTGQPVCIYEIYSGAGAWPFLHHGSLYRGLSLSRKARRLRSDDVDAVGRLPVLNDTH YRDLLCEVGGMFSIANRVDNIHKRPWIGFQSWRAAGFIVHKS" CDS complement(join(6010028..6010090,6010636..6010845, 6011006..6011491,6011637..6011840,6012438..6012758, 6012860..6013031,6013160..6013210,6013417..6013520, 6013749..6013835,6015500..6016009)) /locus_tag="TCM_043407" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 2" /protein_id="EOY18901.1" /db_xref="Phytozome:POPTR_0010s23830.2" /db_xref="TAIR:AT5G04480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940Y7" /translation="MGRNSSPPILDGNGNENGKNKNSDNNNDDDQGFYSIRDRLPFKR NPIHTRDRTKQSSLLDRPLVRNRPRFNRKGFLLFPLRGIHLFYFLIFFSVFAFAMASM LMQSSIAAVVFRQGGERGWRKSVREGLRLGSTLKFMPAGMSRWVAEGGGLDRMRSTAR IGVRGPRLALILGNMKKDPQSLMMLTVVKSLQRLGYVIKIYAVANGKAHAMWEHISGQ ISFLGPEQFVHIDWSIFEGVIADSLEAKEAISSLMQEPFDTVPLIWIIQEDTLATRLP VYEEMGLEHLVSHWKSAFTRANVIVFPDFTLPMLYSMLDTGNFLVIPGSPVDVWGAES YSKTHAKHQLRKDNGFSMDDMVVLVVGSSFFYDELSWDYAVAMHTIGPLLMRYTRRND AGGSFKFIFLSGNSTDGYHDALQQVASRLGLTQGSVRHYGLDGDVNGVLLMADIVLYG TSQEEQGFPSLIIRAMTFGIPVITPDFPIMKKYVVDGTHGVFFPKHQPDALLRAFSLL ISNGRLSRFAQTVASSGRLLAKNILASECITGYASLLENLLNFPSDVLLPAPVSQLRL GSWEWNVFGMEIEHGTGDISRYFSVVYALEEEFTKHTISSDISQYGAEIQDQDIPTEQ DWDIVTEIENFEDYERLEMDEVEERMERNPGVWDDIYRNARRSEKLKFEANERDEGEL ERTGQPVCIYEIYSGAGAWPFLHHGSLYRGLSLESKEVEIRRCGCSWPTSSFE" mobile_element complement(6017335..6020107) /note="source:CACAO_M_E85138_F15_scaffold_10 1 2784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6020367..6025387) /note="source:scaffold_8_CACTA_0867 425 5404" /mobile_element_type="transposon:TIR/CACTA" gene complement(6030561..6037135) /locus_tag="TCM_043409" /note="dbxref CacaoGD:Thecc1EG043409" mRNA complement(join(6030561..6030651,6036091..6036567, 6037047..6037135)) /locus_tag="TCM_043409" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040592t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS complement(6036110..6036457) /locus_tag="TCM_043409" /note="paralog of Thecc1EG040592t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18905.1" /translation="MIIKQTIGRGRREGFSLGKRLQGIKRPLLVVRSKERFGLGYEPT KKEILEIMFEKKKRMARLKRMELENMKIYFSYLYETFRLKGYIHPDLPKRKDHEYETV VNVVAKKQSEETP" mobile_element 6037505..6040712 /note="source:scaffold_5_CACTA_0612 8693 11920" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6040640..6040733) /note="source:CACAO_M_E1841_F5_scaffold_1 3098 3190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6041770..6045208 /note="source:CACAO_M_S_E89272_F5_scaffold_8 1 3440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6045306..6048094 /note="source:CACAO_M_E1841_F5_scaffold_1 8386 9631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6048091..6049468 /note="source:CACAO_M_E44543_F5_scaffold_6 2830 4222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6049470..6050804) /note="source:INTACT189_F49_scaffold_5-int 18356 19704" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6050312..6051459 /note="source:scaffold_1_CACTA_0024 5563 6731" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6050804..6051796 /note="source:INTACT460_F49_scaffold_8-int 1451 2435" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6051797..6054332) /note="source:CACAO_M_S_E145416_F259_scaffold_10 1 2536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6054333..6056830) /note="source:INTACT189_F49_scaffold_5-int 14756 17269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6056831..6059667) /note="source:CACAO_M_E85135_F15_scaffold_10 1 2837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6059668..6061226 /note="source:INTACT460_F49_scaffold_8-int 4954 6539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6061243..6061787 /note="source:scaffold_1_CACTA_0024 11297 11839" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6061650..6064286) /note="source:CACAO_M_E12221_F121_scaffold_3 1 2663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6064287..6066799 /note="source:CACAO_M_E59541_F5_scaffold_9 4801 7330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6066800..6069668) /note="source:CACAO_M_S_E145412_F164_scaffold_10 1 2869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6069669..6072524 /note="source:CACAO_M_S_E89272_F5_scaffold_8 15686 18546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6081966..6085143) /note="source:CACAO_M_E85132_F328_scaffold_10 1 3178" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6082707..6083645 /locus_tag="TCM_043412" /note="dbxref CacaoGD:Thecc1EG043412" mRNA join(6082707..6082924,6083567..6083645) /locus_tag="TCM_043412" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc10154t1" CDS 6082743..6082919 /locus_tag="TCM_043412" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18906.1" /translation="MVTHGIFITIKYLALKLTQISPFSLHMAGKRRTKEERKKTRTLG GKIEEKVWDFKGLS" gene complement(6091664..6099373) /locus_tag="TCM_043414" /note="dbxref CacaoGD:Thecc1EG043414" mRNA complement(join(6091664..6092207,6092669..6092737, 6096753..6096812,6096953..6097085,6097309..6097389, 6097582..6097658,6097744..6097820,6098190..6098292, 6098928..6098972,6099092..6099168)) /locus_tag="TCM_043414" /product="Dual specificity protein phosphatase family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005023001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc588t13; inference alignment:Newbler:10:TSA:cgbaB_g08936t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc592t5" mRNA complement(join(6091668..6092207,6092669..6092776, 6093408..6093467,6095173..6095268,6095930..6095986, 6096753..6096812,6096953..6097085,6097309..6097389, 6097582..6097658,6097744..6097820,6098190..6098292, 6098928..6098972,6099092..6099164,6099275..6099373)) /locus_tag="TCM_043414" /product="Dual specificity protein phosphatase (DsPTP1) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005023001" /inference="similar to AA sequence:ricco:27916.m000154" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08936t00001" mRNA complement(join(6091786..6092207,6092669..6092776, 6093408..6093467,6095173..6095268,6095930..6095986, 6096753..6096812,6096953..6097085,6097309..6097389, 6097582..6097658,6097744..6097820,6097910..6097961)) /locus_tag="TCM_043414" /product="Dual specificity protein phosphatase (DsPTP1) family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005023001" /inference="similar to AA sequence:ricco:27916.m000154" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3913t2; inference alignment:Newbler:10:TSA:cgbaB_g08936t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc592t5" mobile_element 6091957..6092048 /note="source:scaffold_1_CACTA_0016 6348 6434" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(6091986..6092207,6092669..6092776, 6093408..6093467,6095173..6095268,6095930..6095986, 6096753..6096812,6096953..6097085,6097309..6097389, 6097582..6097658,6097744..6097820,6098190..6098292, 6098928..6098972,6099092..6099170,6099275..6099362)) /locus_tag="TCM_043414" /product="Dual specificity protein phosphatase (DsPTP1) family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005023001" /inference="similar to AA sequence:ricco:27916.m000154" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08936t00001; inference alignment:Newbler:10:TSA:cgbaB_g08936t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc592t5" CDS complement(join(6092076..6092207,6092669..6092776, 6093408..6093467,6095173..6095268,6095930..6095986, 6096753..6096812,6096953..6097085,6097309..6097389, 6097582..6097658,6097744..6097820,6098190..6098292, 6098928..6098972,6099092..6099164,6099275..6099300)) /locus_tag="TCM_043414" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27916.m000154" /codon_start=1 /product="Dual specificity protein phosphatase (DsPTP1) family protein isoform 1" /protein_id="EOY18907.1" /db_xref="TAIR:AT3G52180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUX0" /translation="MNCLQNLPRSYARPFQGCKSYPRKPFSCSINMMGGMDFSDIPRS MAVKAISGSTSSAKQSSSESEGEKSNIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLI VGSCLQAPEDVDKLRKVGVKTIFCLQQDPDLEYFGVDIGAIQDYAKKCSDIEHIRAQI RDFDSFDLRMRLPAVVSKLYKAINQNGGVTYVHCTAGLGRAPAVAMAYMFWVQGYKLS EAHRLLLSKRSCFPKLDAIKSATADILTDLKRELVTLTWEDSKCSTVEVSGLDIGWGQ RIPLKFDKGHGSWTLQRELPEGRYEYKYIVDGEWTYNEFELVTTPNKDGHVNNFLHVV NNDPSSVNGAVRKRLSSEDPDLRKEERLKIRQFLEAYPEEE" CDS complement(join(6092076..6092207,6092669..6092776, 6093408..6093467,6095173..6095268,6095930..6095986, 6096753..6096812,6096953..6097085,6097309..6097389, 6097582..6097658,6097744..6097820,6098190..6098292, 6098928..6098972,6099092..6099170,6099275..6099300)) /locus_tag="TCM_043414" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27916.m000154" /codon_start=1 /product="Dual specificity protein phosphatase (DsPTP1) family protein isoform 2" /protein_id="EOY18908.1" /db_xref="TAIR:AT3G52180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUX0" /translation="MNCLQNLPSFRSYARPFQGCKSYPRKPFSCSINMMGGMDFSDIP RSMAVKAISGSTSSAKQSSSESEGEKSNIYSHNMTEAMGAVLTYRHELGMNYNFIRPD LIVGSCLQAPEDVDKLRKVGVKTIFCLQQDPDLEYFGVDIGAIQDYAKKCSDIEHIRA QIRDFDSFDLRMRLPAVVSKLYKAINQNGGVTYVHCTAGLGRAPAVAMAYMFWVQGYK LSEAHRLLLSKRSCFPKLDAIKSATADILTDLKRELVTLTWEDSKCSTVEVSGLDIGW GQRIPLKFDKGHGSWTLQRELPEGRYEYKYIVDGEWTYNEFELVTTPNKDGHVNNFLH VVNNDPSSVNGAVRKRLSSEDPDLRKEERLKIRQFLEAYPEEE" CDS complement(join(6092076..6092207,6092669..6092737, 6096753..6096812,6096953..6097085,6097309..6097389, 6097582..6097658,6097744..6097820,6098190..6098292, 6098928..6098972,6099092..6099097)) /locus_tag="TCM_043414" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Dual specificity protein phosphatase family protein isoform 5" /protein_id="EOY18911.1" /db_xref="TAIR:AT3G52180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUY7" /translation="MMGGMDFSDIPRSMAVKAISGSTSSAKQSSSESEGEKSNIYSHN MTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQAPEDVDKLRKVGVKTIFCLQQDPDL EYFGVDIGAIQDYAKKCSDIEHIRAQIRDFDSFDLRMRLPAVVSKLYKAINQNGGVTY VHCTAGLGRAPAVAMAYMFWVQGYKLSEAHRLLLWTYNEFELVTTPNKDGHVNNFLHV VNNDPSSVNGAVRKRLSSEDPDLRKEERLKIRQFLEAYPEEE" CDS complement(join(6092076..6092207,6092669..6092776, 6093408..6093467,6095173..6095268,6095930..6095986, 6096753..6096812,6096953..6097085,6097309..6097389, 6097582..6097658,6097744..6097794)) /locus_tag="TCM_043414" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27916.m000154" /codon_start=1 /product="Dual specificity protein phosphatase (DsPTP1) family protein isoform 3" /protein_id="EOY18909.1" /db_xref="TAIR:AT3G52180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FEB5" /translation="MNYNFIRPDLIVGSCLQAPEDVDKLRKVGVKTIFCLQQDPDLEY FGVDIGAIQDYAKKCSDIEHIRAQIRDFDSFDLRMRLPAVVSKLYKAINQNGGVTYVH CTAGLGRAPAVAMAYMFWVQGYKLSEAHRLLLSKRSCFPKLDAIKSATADILTDLKRE LVTLTWEDSKCSTVEVSGLDIGWGQRIPLKFDKGHGSWTLQRELPEGRYEYKYIVDGE WTYNEFELVTTPNKDGHVNNFLHVVNNDPSSVNGAVRKRLSSEDPDLRKEERLKIRQF LEAYPEEE" mRNA complement(join(<6092178..6092207,6092714..6092776, 6093408..6093467,6095173..6095268,6095930..6095986, 6096753..6096812,6096953..6097085,6097309..6097389, 6097582..6097658,6097744..6097820,6098190..6098371)) /locus_tag="TCM_043414" /product="Dual specificity protein phosphatase (DsPTP1) family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005023001" /inference="similar to AA sequence:ricco:27916.m000154" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8066t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc592t5; inference alignment:Newbler:10:TSA:cgbaB_g08936t00001" CDS complement(join(<6092178..6092207,6092714..6092776, 6093408..6093467,6095173..6095268,6095930..6095986, 6096753..6096812,6096953..6097085,6097309..6097389, 6097582..6097658,6097744..6097820,6098190..6098211)) /locus_tag="TCM_043414" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:27916.m000154" /codon_start=1 /product="Dual specificity protein phosphatase (DsPTP1) family protein isoform 4" /protein_id="EOY18910.1" /db_xref="TAIR:AT3G52180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUX0" /translation="MTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQAPEDVDKLRKV GVKTIFCLQQDPDLEYFGVDIGAIQDYAKKCSDIEHIRAQIRDFDSFDLRMRLPAVVS KLYKAINQNGGVTYVHCTAGLGRAPAVAMAYMFWVQGYKLSEAHRLLLSKRSCFPKLD AIKSATADILTDLKRELVTLTWEDSKCSTVEVSGLDIGWGQRIPLKFDKGHGSWTLQR ELPEGRYEYKYIVDGEWTYNEFELVVNNDPSSVN" gene 6099463..6110569 /locus_tag="TCM_043415" /note="dbxref CacaoGD:Thecc1EG043415" mRNA join(6099463..6099618,6104085..6105772,6110058..6110569) /locus_tag="TCM_043415" /product="Disease resistance family protein / LRR family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g34470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043417t1" /inference="similar to AA sequence:ricco:30131.m007178" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(6099669..6100262) /note="source:CACAO_M_E4753_F17_scaffold_2 7215 7822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6100263..6100562) /note="source:scaffold_2_CACTA_0244 13871 14701" /mobile_element_type="transposon:TIR/CACTA" CDS join(6104089..6105772,6110058..6110110) /locus_tag="TCM_043415" /note="dbxref ricco:30131.m007178; paralog of Thecc1EG043417t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein" /protein_id="EOY18912.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWY1" /translation="MDPFAINFLVLLCLNIFTHSFCIRIHNSTCIKSEKQALLKFRQD LQGPSNMLADWTRNGDCCNWSGVVCDNVTGRVTELHLGSAQGGCALKAKAETLVRPKL GGKLNPSLLDLKSLSYLDLSDNNFGQTPIPAWFWNLTSRLHYLNISRNQFLGNISDLL TMSHPSVVLDLSSNNFTGPLPRISVSVTALDLSKNALSGSISHFLCYRMNQPMRLEVL NLSCNLFSGEIPDCWEQWPRLVAIKFCNNSFSGKIPSSMGTLTHLQSLHLRNNSLVGE VPFSLRNCTELLTVDFGANQLSGEIPTWMGERPTKLIVIILQTNRFHGPIPQEFCALS SLQILDLSHNNLSGIIPSCIKNLSAMISRNNSDGKISYNTSRGCFFDDVALVVKGVVM DYSATLKLLALLDLSDNNLSGDIPEEVTSLKGLISLNLSNNLLVGRIPDNIGSMRLLE CVDLSKNNLSGGIPSSMTELNFLSYLNLSNNKLTGKIPSGTQLQSLSASSFLGTELFG PPLTKDNTSSPLTPSNTVGEEEVDNGPKVNWFHLSVEFGFLFGFFGVIGPVIFRINDV AQYRDGSRDVNG" gene complement(6108244..6120918) /locus_tag="TCM_043416" /note="dbxref CacaoGD:Thecc1EG043416" mRNA complement(join(6108244..6109190,6109299..6109495, 6109603..6109839,6120753..6120918)) /locus_tag="TCM_043416" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(join(6109143..6109190,6109299..6109495, 6109603..6109795)) /locus_tag="TCM_043416" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18913.1" /translation="MSSSRPHIISTGSRCHKSNVKVHIGLVHALISFVTTQIQPLVQQ LFGPKSRGPQKLKLKLLVVVGLNNHIHIRCVMLGITISPTQILDVLIKTTHHIHGTKI SPEQCESSHRTGAGSDTICNNPSPTTGPMRDVGYYNMILGMAV" mobile_element complement(6110094..6111039) /note="source:CACAO_MITE_S250_scaffold_10 1 946" /mobile_element_type="transposon:TIR/MITE" mobile_element 6112206..6112323 /note="source:CACAO_PIF_E144_scaffold_10 3538 3658" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6117754..6119275) /note="source:scaffold_1_CACTA_0016 13518 15018" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6119259..6119343) /note="source:CACAO_M_S_E89272_F5_scaffold_8 10924 11011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6121027..6121307) /note="source:INTACT405F_F91_scaffold_4-int 18507 18839" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6121696..6121890 /note="source:scaffold_5_CACTA_0586 9986 10173" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6122107..6122450 /note="source:CACAO_hAT_E1920_scaffold_4 1 347" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(6122408..6122828) /note="source:CACAO_on_E325_scaffold_10 1 421" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 6122750..6123581 /note="source:CACAO_Again_on_S_E195_scaffold_6 284 1472" /mobile_element_type="transposon:TIR/hAT" mobile_element 6124567..6124607 /note="source:CACAO_M_E85287_F215_scaffold_10 1009 1050" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6124630..6127584 /locus_tag="TCM_043417" /note="dbxref CacaoGD:Thecc1EG043417" mRNA join(6124630..6124899,6125786..6127584) /locus_tag="TCM_043417" /product="Disease resistance family protein / LRR family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028967001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043415t1" /inference="similar to AA sequence:ricco:30131.m007188" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc2990t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1031t1" mobile_element 6124702..6124822 /note="source:CACAO_M_E34582_F17_scaffold_5 1101 1221" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 6125824..6127488 /locus_tag="TCM_043417" /note="dbxref ricco:30131.m007188; paralog of Thecc1EG043415t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein" /protein_id="EOY18914.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RG99" /translation="MSCIQIEKQALLRFKQDLKDPSNRLAAWTNDGDCCKWDGIVCSD VTGHVIQLHLGSSQDASRAAHERSKLGGKLNPSLLDLKYLTYLDLSNNKFKETQIPTW FWNLSSYLYYLNISRNQFQGHIPDLPTMTNPSVVIDLSSNNFRGLLPRLSSNVTAIDL SNNSMSGSISHFLCYKVNEPMKLEVLNLGNNLLSGEIPDCWKKWPRLVGIKFCDNNFS GKIPSSIGSLTSLQSLHLRKNSLVGEVPSSIKNCRELLTVDFGANRLSGHIPPWMGGR LSKLIILTLHTNKFNGNIPKELCVLSSLQILDLSHNNFTGNIPSCVNNLSAMVSRNNS DNKIFYRTSKGSFFEDILVVMKGRVVEYSNTLKLVKTVDLSDNNLSGEIPKEVTSLVG LQSLNFSHNLLVGRIPDNIGAMVSLECVDLSTNLLSGKIPPAISHLTFLSQLNLSYNK RITGKIPTSTQLQSLDASSFLGTELFGPPLSENSNAVTFSSSAGEKEEGGHDVDWSYL SIELGFSFGLLGVLVPVLFCKSWRFVYFQFLDDILHNLCGIISKYF" gene complement(6127522..6131482) /locus_tag="TCM_043418" /note="dbxref CacaoGD:Thecc1EG043418" mRNA complement(join(6127522..6127878,6128971..6129176, 6129315..6129411,6129555..6129625,6129790..6129943, 6130053..6130130,6130232..6130342,6130425..6130884, 6131212..6131482)) /locus_tag="TCM_043418" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT4G10650.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043405t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013826001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01614t00002" CDS complement(join(6127618..6127878,6128971..6129176, 6129315..6129411,6129555..6129625,6129790..6129943, 6130053..6130130,6130232..6130342,6130425..6130595)) /locus_tag="TCM_043418" /note="paralog of Thecc1EG043405t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY18915.1" /db_xref="Phytozome:GSVIVT01013826001" /db_xref="TAIR:AT4G10650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82497" /translation="MASGSIASKLAREIGSVVKKAASSNRGWYGPHMAVATCAIAQRL SLVDLIVEIRDARIPLSSEYELLRIVPPRPPSKRIVVMNKMDLTNPTQIKEWMRFFEQ QKCISYGVNSHNKDSVKGLLNFIQAQVRELNKADHRFSDTITVMLVGIPNVGKSALAN SWHQIGRITAAEKGKLKHALVSPQPGETKDISSLKIGSHPNIYLLDTPGILPPTIHDA ERCSKLALTGAIGDSLIGLKDLAQYFLAIPNLSDQHTKWAKLSTNWGKVSVLEHKEEH SSSSKLEMRQRRQYLMDHTQDFMVHDVRRAVFDVISSFDGNLECEDNMVKLIEAQFVA LSEAFHVQEEIDQNVQDKVAVKLLNLCRTGRLGHYTLDPVPVTHCDCL" mobile_element 6131779..6132625 /note="source:scaffold_4_CACTA_0506 2697 3579" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6139241..6140574 /note="source:INTACT1427F_F390_scaffold_9-int 1 1353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6140979..6141186 /note="source:CACAO_M_E12044_F76_scaffold_2 20671 20870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6141520..6152428 /note="source:INTACT1427F_F390_scaffold_9-int 3158 13646" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6151358..6155842) /locus_tag="TCM_043420" /note="dbxref CacaoGD:Thecc1EG043420" mRNA complement(join(6151358..6152423,6155810..6155842)) /locus_tag="TCM_043420" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028840.18" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037532t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage" CDS complement(6151398..6152123) /locus_tag="TCM_043420" /note="paralog of Thecc1EG037532t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18916.1" /translation="MTRVEVDQHLKKKGDTECLPWSFLNGYIKKHMEDEQGLLAFAMA IYGLVVFPKVLGHVEVSVIDFFDKVTRSINPVPSILAKTFRSLNFCRRKGEGRFIGCA QLLIIWIKSHFECKESKFQKLYLSASCPILEFYESESPDCKRKEEWVARLRRLMSIEV TWRAPWMPRMQVMYKCGDKPWVPLMGPWGAISYAPIMVRRQFESEQFVPMTHQLDQLE FTYGKPETLKRIEEIAQDWKKTC" mobile_element complement(6152415..6155373) /note="source:CACAO_M_E69760_F9_scaffold_9 6707 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6155371..6157699 /note="source:INTACT1427F_F390_scaffold_9-int 13970 16128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6158060..6158242) /note="source:INTACT444_F216_scaffold_4-int 18220 18415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6158200..6158372 /note="source:CACAO_M_E58877_F5_scaffold_9 20763 20883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6158755..6159155 /note="source:CACAO_M_E58877_F5_scaffold_9 20426 20725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6158940..6159172) /note="source:CACAO_M_E69938_F9_scaffold_9 3530 3746" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6160510..6171885) /locus_tag="TCM_043423" /note="dbxref CacaoGD:Thecc1EG043423" mRNA complement(join(6160510..6160536,6163354..6164077, 6171875..6171885)) /locus_tag="TCM_043423" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019647t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" mobile_element complement(6160868..6161187) /note="source:scaffold_8_CACTA_0857 593 939" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6161528..6162264) /note="source:scaffold_9_CACTA_0941 431 1179" /mobile_element_type="transposon:TIR/CACTA" CDS complement(6163452..6163856) /locus_tag="TCM_043423" /note="paralog of Thecc1EG019647t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18917.1" /translation="MARKNVFLLLSMFCLLAASATATRELSGYDKGPGHVLAARLEAS KGLLKCWSALNDLKSCMPQIVGFLIIKGQHGIGHKCCGDILKINACWPGMFISIGFTY EEDKRLTGYCDAPSAPTAAPFAGSPISSATFI" mobile_element complement(6165084..6167118) /note="source:CACAO_M_E85128_F9_scaffold_10 5875 7909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6169075..6174948) /note="source:CACAO_M_E85128_F9_scaffold_10 1 5874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6175386..6175963) /note="source:scaffold_4_CACTA_0502 2147 2728" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6175712..6176010 /note="source:scaffold_1_CACTA_0008 11325 11651" /mobile_element_type="transposon:TIR/CACTA" gene 6176003..6178796 /locus_tag="TCM_043425" /note="dbxref CacaoGD:Thecc1EG043425" mRNA join(6176003..6176167,6177191..6177326,6177921..6178796) /locus_tag="TCM_043425" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element complement(6176326..6177867) /note="source:CACAO_M_E85127_F17_scaffold_10 1 1542" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(6177196..6177326,6177921..6178113) /locus_tag="TCM_043425" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18918.1" /translation="MRLFFSMILWLESQLSIWCFVLSPFFKSPLKGCFYKALKLDQVR CFCTWNTLGRFRVWNILGAFALVMTLGIFALGTLLGISALETLLGASMLGTPIGTSAL GTPLM" mobile_element complement(6178143..6178187) /note="source:INTACT599_F268_scaffold_9-int 14879 14923" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6179813..6185242) /locus_tag="TCM_043426" /note="dbxref CacaoGD:Thecc1EG043426" mRNA complement(join(6179813..6180518,6184677..6185242)) /locus_tag="TCM_043426" /product="H0502G05.11 protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036470t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(6179922..6180452) /locus_tag="TCM_043426" /note="paralog of Thecc1EG036470t1" /codon_start=1 /product="H0502G05.11 protein" /protein_id="EOY18919.1" /translation="MMETITQFASSTAITFQPQPMLTHNGENAANMVNNNKNGGNGES TTDPFLNTTNPSIVGNSITVTPSTSAQSFVIEKELKKLLDQKNKSLNFSKFDLKLPYP AKVATKPYPKDYISPKFKQFNGKTSDAREHVMKFVKTLGFASLDDNLKLKEFSKSLIE KTYTWHVNLTPGSVDS" mobile_element 6181177..6182645 /note="source:CACAO_M_S_E31635_F14_scaffold_3 1733 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6182748..6184131 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3314 4702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6184129..6184217) /note="source:INTACT349_F203_scaffold_6-int 235 323" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6185337..6187801 /locus_tag="TCM_043427" /note="dbxref CacaoGD:Thecc1EG043427" mRNA join(6185337..6186448,6186877..6187501,6187777..6187801) /locus_tag="TCM_043427" /product="UDP-D-glucose/UDP-D-galactose 4-epimerase 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s10700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016477t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10700.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8072t5" CDS join(6185412..6186448,6186877..6186940) /locus_tag="TCM_043427" /note="paralog of Thecc1EG016477t1" /codon_start=1 /product="UDP-D-glucose/UDP-D-galactose 4-epimerase 5" /protein_id="EOY18920.1" /db_xref="Phytozome:POPTR_0001s10700.1" /db_xref="TAIR:AT4G10960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SN58" /translation="MAKNILVTGGAGFIGSHTVLQLLLAGYNAVVVDNLNNSSDIAIR RVKELAGEYGNNLYFHQLDLRDKAALQKLFTETKFDAVIHFAGLKAVGESMKKPLLYY NNNLIGAITLLDVMAANGCKNLVFSSSATVYGWPKEVPCTEDFPLAAINPYGRTKPFI EQICRDIQHADLEWNIILLRYFNPVGAHPSGYIGEDPRGTPNNLMPYIQQVAVGRRPA LTVFGNDYSTKDGTGVRDYMHVVDLAEGHIAALRKLCDPKRGCEVYNLGTGKGTSVLE IVAAFEKASGKKIPLVMAGRRPGDGEIVYASTEKAERELNWKAKYGIEDMCRDQWNWA NKNPYGYQSPPEWLVIFFLLLLVIVLANQHGP" gene complement(6186823..6193892) /locus_tag="TCM_043428" /note="dbxref CacaoGD:Thecc1EG043428" mRNA complement(join(6186823..6187678,6187769..6187839, 6188974..6189093,6189646..6189766,6189850..6189922, 6190010..6190109,6190472..6190563,6190641..6190773, 6193033..6193133,6193525..6193792)) /locus_tag="TCM_043428" /product="Phosphate transporter traffic facilitator1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02920.1" /inference="similar to AA sequence:Phytozome:Glyma10g34380.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08097t00001" CDS complement(join(6187488..6187678,6187769..6187839, 6188974..6189093,6189646..6189766,6189850..6189922, 6190010..6190109,6190472..6190563,6190641..6190773, 6193033..6193133,6193525..6193704)) /locus_tag="TCM_043428" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Phosphate transporter traffic facilitator1 isoform 1" /protein_id="EOY18921.1" /db_xref="Phytozome:Glyma10g34380.1" /db_xref="TAIR:AT3G52190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYE0" /translation="MERGAGGSVTCGSWIRRPENVIFVVLGRSMTPPGSAPSSSSVIE IFSFDPKTTSLCSSPLARHELEESDGNPITIAVHPSGDDFVCSTTNGGCKLFELYGQE KNLKLFAKELPPFGDAGLQKCLAFSVDGSRFATGGVDGHLRILEWPSLRIIVDEVRAH KSFRDMDFSLDSEFLASTSTDGSARIWKTEDGVPLTTLARNSDEKIELCRFSKDGTKP FLFCTVQKGDKALTAVYDISTWNKIGHKRLLRKPASVLSVSLDGKYLALGSKDGDICV VDVKKMEISHWSKRLHLGASISLLEFCPGQRVVLTTSSQWGAMVTKLNVPADWKEWQI YLLLVGLFLASAVAFYIFFKNSDSFWNFPLTRQQQRPKMDSFLGDAQSEDQNAFGPLD M" mRNA complement(join(6187546..6187678,6187769..6188183, 6188974..6189093,6189646..6189766,6189850..6189922, 6190010..6190109,6190472..6190563,6190641..6190773, 6193033..6193133,6193525..6193892)) /locus_tag="TCM_043428" /product="Phosphate transporter traffic facilitator1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02920.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02920.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc326t1; inference alignment:Newbler:10:TSA:cgbaB_g08097t00001" CDS complement(join(6188171..6188183,6188974..6189093, 6189646..6189766,6189850..6189922,6190010..6190109, 6190472..6190563,6190641..6190773,6193033..6193133, 6193525..6193704)) /locus_tag="TCM_043428" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Phosphate transporter traffic facilitator1 isoform 2" /protein_id="EOY18922.1" /db_xref="Phytozome:POPTR_0008s02920.1" /db_xref="TAIR:AT3G52190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYE0" /translation="MERGAGGSVTCGSWIRRPENVIFVVLGRSMTPPGSAPSSSSVIE IFSFDPKTTSLCSSPLARHELEESDGNPITIAVHPSGDDFVCSTTNGGCKLFELYGQE KNLKLFAKELPPFGDAGLQKCLAFSVDGSRFATGGVDGHLRILEWPSLRIIVDEVRAH KSFRDMDFSLDSEFLASTSTDGSARIWKTEDGVPLTTLARNSDEKIELCRFSKDGTKP FLFCTVQKGDKALTAVYDISTWNKIGHKRLLRKPASVLSVSLDGKYLALGSKDGDICV VDVKKMEISHWSKRLHLGASISLLEFCPGQSVDH" gene 6197397..6208087 /locus_tag="TCM_043429" /note="dbxref CacaoGD:Thecc1EG043429" mRNA join(6197397..6197927,6201584..6201748,6202406..6202504, 6202634..6202851,6204569..6204937,6205353..6206600, 6206782..6207237,6207808..6208087) /locus_tag="TCM_043429" /product="Phosphoprotein phosphatase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025300t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s02830.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS join(6197918..6197927,6201584..6201748,6202406..6202504, 6202634..6202851,6204569..6204937,6205353..6206600, 6206782..6207237,6207808..6207837) /locus_tag="TCM_043429" /note="paralog of Thecc1EG025300t2" /codon_start=1 /product="Phosphoprotein phosphatase, putative" /protein_id="EOY18923.1" /db_xref="Phytozome:POPTR_0013s02830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NCL4" /translation="MTLGCPKMKIFSEGDLSTPMLQRVQFVESEDEACSEDEGDLRTP MLRRVQFVESEDGACWILWVRAYYTLRAFRVDGAMEKESSRNYRLQKLILESCADMAS FYQGSKILEFLSLKRVNVVGCPQMFAFASTVSKEQRIEATDDGGNTRRLSKGVADKVF FNNTVLCPNLAILKLSSTKVHSIWSDQVQVTSSNVLNLRTMRVSGCHNLKHLFPSFLI KSFVQLNHLMIHDCKNMEEVIYTDGLAQAEGIMLLPNLERLWLGQLPKLTRFCYGDNS ESDGLALFNEKTVFPRLNDLRIGMGNWRKIWDDKVTMNSFCELQFLLVRDCERLSNIF PFYMMERLEKLEILQIMNCDSLEEILGPQGLNSNQSHSVATTELINDKAVTKFVFPKV RSLVLSKLSKLKSFYSKMHTTEWPCLKELEVIECNKLEISAEEYLNIRETQGESQLST QYFGKVKAFGLMSFRNKSVAISNCFIQSFPHLEKLVVGEAFFNEIFQFEGLGGDEGHA GVLARLSELSLLELPELTHPRKEEIPLGEEVLNNLRILAVLRCGKSKNLMPCSASFKN LTTLEISKRHGFMNLVTLPTAKSMVLLTRMSLTDCQMLERIIASTSNEVMDAIIFSKL ESLELDGLPSLSRFCSGNYTFEFPSLKEVIMRRCPKMEIFSKGELSTPKLRGIKSTEG EYVGHWEGNLNATVQQLFIEKVFPSMEDLELSLINIQRILHYKLLAQHSYAQNLTCLT MEGCHNLNSLFPSSTVESFVQLKMLNIENCENVEKEILIEGLANEEMIRQWLFRRLEF LLLKDLPKLTRFCHGNYLEFPLLRTLRIESCPTLKTFISDAEGNSSEIASPTLFNEKA AHIEEFLL" mobile_element 6199789..6200344 /note="source:scaffold_4_CACTA_0502 5228 5791" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6209903..6211402 /note="source:CACAO_M_E49195_F17_scaffold_6 1 1520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6212649..6214441 /note="source:CACAO_M_S_E64023_F13_scaffold_5 13483 15300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6214442..6217397) /note="source:CACAO_M_S_E145401_F72_scaffold_10 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6217398..6218413) /note="source:CACAO_M_E53319_F273_scaffold_8 1 1020" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6218377..6218420) /note="source:scaffold_4_CACTA_0500 1969 2012" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6218943..6219029 /note="source:CACAO_M_E42641_F14_scaffold_5 7077 7165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6222394..6222439 /note="source:INTACT414_F210_scaffold_5-int 10229 10273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6222612..6222749 /note="source:INTACT414_F210_scaffold_5-int 10320 10454" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6224540..6227045 /locus_tag="TCM_043432" /note="dbxref CacaoGD:Thecc1EG043432" mRNA join(6224540..6225244,6225345..6225412,6225498..6225629, 6225789..6225904,6226022..6226136,6226221..6227045) /locus_tag="TCM_043432" /product="Vitamin E pathway gene 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400029561" /inference="similar to AA sequence:Phytozome:POPTR_0010s23890.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc1075t3" mRNA join(6224749..6225244,6225345..6225412,6225498..6225629, 6225789..6225904,6226031..6226136,6226221..6226674) /locus_tag="TCM_043432" /product="Vitamin E pathway gene 5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400029561" /inference="similar to AA sequence:Phytozome:POPTR_0010s23890.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10017t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc1075t3" CDS join(6224816..6225244,6225345..6225412,6225498..6225629, 6225789..6225904,6226022..6226136,6226221..6226407) /locus_tag="TCM_043432" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Vitamin E pathway gene 5 isoform 1" /protein_id="EOY18924.1" /db_xref="Phytozome:POPTR_0010s23890.1" /db_xref="TAIR:AT5G04490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUX4" /translation="MPRSRIYSFHNYTQNKNQKKVPSSGNLSSLSLFLCLCWSACAIM TFSLSFTHPIFSRHVHSAALSLSSSPPPPPPGFFFLSPPTPTSLRFDFLYRVPQRSAA FSAAETAALLQDTASSAAVLAGAYALVFTFDTLTQKELIQQNLSRKLVHILSGLLFAV SWPIFSNSLLARYFASVVPLVNCVRLVIHGLSLADDQRLIKSVTREGNPKELLRGPLY YVLILILCALVFWRESPVGLISLAMMCGGDGVADILGRRFGSSKLPYNRNKSWVGSIS MFVFGFFISVGMLYYYSVLGYFQLDWGWTMCRVALVSLVATVVESLPFTTVVDDNISV PLATMIAAYFSFRP" CDS join(6224816..6225244,6225345..6225412,6225498..6225629, 6225789..6225904,6226031..6226136,6226221..6226407) /locus_tag="TCM_043432" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Vitamin E pathway gene 5 isoform 2" /protein_id="EOY18925.1" /db_xref="Phytozome:POPTR_0010s23890.1" /db_xref="TAIR:AT5G04490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUX4" /translation="MPRSRIYSFHNYTQNKNQKKVPSSGNLSSLSLFLCLCWSACAIM TFSLSFTHPIFSRHVHSAALSLSSSPPPPPPGFFFLSPPTPTSLRFDFLYRVPQRSAA FSAAETAALLQDTASSAAVLAGAYALVFTFDTLTQKELIQQNLSRKLVHILSGLLFAV SWPIFSNSLLARYFASVVPLVNCVRLVIHGLSLADDQRLIKSVTREGNPKELLRGPLY YVLILILCALVFWRESPVGLISLAMMCGGDDILGRRFGSSKLPYNRNKSWVGSISMFV FGFFISVGMLYYYSVLGYFQLDWGWTMCRVALVSLVATVVESLPFTTVVDDNISVPLA TMIAAYFSFRP" mobile_element 6227152..6232996 /note="source:CACAO_M_S_E32591_F276_scaffold_4 1 5966" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6232996..6234839) /note="source:CACAO_M_S_E38315_F276_scaffold_4 7 1927" /mobile_element_type="retrotransposon:LTR/Copia" gene 6239647..6240315 /locus_tag="TCM_043434" /note="dbxref CacaoGD:Thecc1EG043434" mRNA 6239647..6240315 /locus_tag="TCM_043434" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS 6239706..6240197 /locus_tag="TCM_043434" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18926.1" /translation="MGMASTSHSNGKDELINAQHQSSGRTKAGQEPGMKDVKGKSYLQ ALTGATNDLMSTTPPSPPSPSSLRLCSGLIEVETLRWLETSLIGLCKSACDPKTVATL IRNEGIKGISIRRVIGFHYLISFDDKSKFEEGQIDNWSWLEKWFCKIEIWTPNSGIKA RRC" mobile_element 6240464..6241687 /note="source:CACAO_M_S_E16721_F36_scaffold_2 17787 19077" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6242870..6244182 /note="source:INTACT726_F314_scaffold_5-int 2322 3422" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6243655..6254133 /note="source:CACAO_M_S_E16721_F36_scaffold_2 6017 16483" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6254258..6256111 /note="source:CACAO_M_S_E16721_F36_scaffold_2 16310 18169" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6256150..6261484 /note="source:CACAO_M_E59738_F82_scaffold_9 4874 10222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6270422..6271330 /note="source:CACAO_M_E58324_F9_scaffold_9 43 954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6271350..6282136) /note="source:CACAO_M_S_E145397_F15_scaffold_10 1 10778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6281993..6282159 /note="source:CACAO_M_E45017_F15_scaffold_6 8283 8444" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6285031..6289316 /locus_tag="TCM_043439" /note="dbxref CacaoGD:Thecc1EG043439" mRNA join(6285031..6286334,6289024..6289316) /locus_tag="TCM_043439" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004838" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400004838" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1659t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3217t1" CDS 6285140..6286267 /locus_tag="TCM_043439" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18927.1" /db_xref="Phytozome:PGSC0003DMP400004838" /translation="MATRSGKGDWPDDLLTEILLRLPVKAIIRFKCVAKTWYSLFESP SFASQHLSISKKNKRFLICHTDTSGNLVMRLFVDQTLVSYQDLFPQMPQHIGDEYPII CIYDGLLCLCNTKPNYITLWNPFTREFRLLPQCNENMPPQIETFGHVIGFGWDSFSND YKVIYQRTYIDLEEDIGKTHHAVYRMSTDSWRVLEGKDVEAFEELAICNSDSNTCVNG VYYWVAFKILHYHKVLAFHFGNEVFQLIDWPTVPEPQYSNGQLCRLPDDRISLWVSHF DENGKSNDVWVLNDEGQYWTKLLSIGPLLGVERMFGFFNKKINGSIKVFVEAISEQLL LYDHDTQEFKDLNIRLRQVWDCLEVYTYEESLVALSRDRIL" mobile_element 6290441..6290462 /note="source:INTACT186_F165_scaffold_12-int 7673 7699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6290463..6293412) /note="source:CACAO_M_S_E145395_F312_scaffold_10 1 2950" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6293909..6295906) /locus_tag="TCM_043440" /note="dbxref CacaoGD:Thecc1EG043440" mRNA complement(join(6293909..6294634,6294780..6294834, 6295233..6295295,6295381..6295567,6295673..6295906)) /locus_tag="TCM_043440" /product="Pentatricopeptide repeat-containing-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043446t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400014116" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(join(6294029..6294634,6294780..6294834, 6295233..6295295,6295381..6295567,6295673..6295814)) /locus_tag="TCM_043440" /note="paralog of Thecc1EG043446t1" /codon_start=1 /product="Pentatricopeptide repeat-containing-like protein" /protein_id="EOY18928.1" /db_xref="Phytozome:PGSC0003DMP400014116" /db_xref="TAIR:AT1G73400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S795" /translation="MIQKKLKIRGYSLNMDGLEEIFSFVDRFQDAQDEAIDLLLDQLD HESLVKSSIIDKEAVHRVISLLLEAKAAEEECLTSSTSFSHSSILVVDAFLVPKFQYD PIKKHFFSHAGSLLIHGDASTKSALYRDRCSIRGVSTVAPLLFLFHLGCSPAHQSPFV VAVFCSNTRASNSSFSDVAKFYATIMDNSKAYDNLEKSLDQLELQLTTPLALELLQRL FLEDKLAFKFFTWAARKHNYAHQPQAYNQMIDILSNTKYKIKQFRIVCDMLDHMKRSN RNAVPTEVLLLILRQYTEKHLTHLQKFAKKKRIRVKTQSEINAFNLLLKSIFSLQSIL CMLKRQEGIHYLSYAL" mobile_element complement(6300679..6313878) /note="source:CACAO_M_E85113_F12_scaffold_10 1 13200" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6315553..6317305 /locus_tag="TCM_043444" /note="dbxref CacaoGD:Thecc1EG043444" mRNA join(6315553..6315675,6315744..6315801,6315886..6316273, 6316363..6316408,6316784..6317305) /locus_tag="TCM_043444" /product="Retrotransposon protein, putative" /inference="alignment:exonerate-protein:2:frave:gene05726" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004024t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc2214t1" CDS join(6315597..6315675,6315744..6315801,6315886..6316273, 6316363..6316408,6316784..6317151) /locus_tag="TCM_043444" /note="paralog of Thecc1EG004024t1" /codon_start=1 /product="Retrotransposon protein, putative" /protein_id="EOY18929.1" /translation="MLIIIIIDFVVLFLNKYLLLGVINIYFMARLGLRRNLNRRKRIV ATRRVRSYNLDFYANREYVMRLVHDNDFSCIAQVRMNKHTFVKLCEMLENIGGLKSTR NMLVDEQVAIFLYIIAHHLKSQVIRQKFKRSSKTISRHFNKVLNAVMKLQDHLLRKPK PIPTNSTDNWWKWFKNCLGALDGTYIEVKEGHQPTTLEEFFNMKHVAARNVIERCFGL LKIRWAILRSPSFYPIKIHNRIIIACCLLHNFIRREMTFDLIEDEVGEYLHDNTTPEE EDVIGAINPTDAWTNWRMQLANEIFTEWQTSRQNQN" gene complement(6319332..>6319948) /locus_tag="TCM_043445" /note="dbxref CacaoGD:Thecc1EG043445" mRNA complement(join(6319332..6319725,6319923..>6319948)) /locus_tag="TCM_043445" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc879t2; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9881t7" CDS complement(join(6319457..6319725,6319923..>6319947)) /locus_tag="TCM_043445" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY18930.1" /translation="HSNSCDSCEVERGGTRGRKAERKEPISTTTNLNREARGRIGYEE GERKNVEKRERKRAKKVRYSLIFFLSCYFVIDVYNYFLFLPFFLLTFQPYDEI" gene complement(6322162..6324449) /locus_tag="TCM_043446" /note="dbxref CacaoGD:Thecc1EG043446" mRNA complement(6322162..6324449) /locus_tag="TCM_043446" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s10890.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013363t1" /inference="similar to AA sequence:frave:gene09308" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3241t2" CDS complement(6322290..6323891) /locus_tag="TCM_043446" /note="dbxref frave:gene09308; paralog of Thecc1EG013363t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY18931.1" /db_xref="TAIR:AT1G73400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FX35" /translation="MRRIRFACLSALKSPNSFLCQNNSIPTALFRIARLPINPPFVVA AFCSNTRASDSGFSDVAKFYATIMDNSKAYDNLEKSLDQLELQLTTPLVLELLQRLSM EEKLAFRFFTWAARQHNYAHQPQAYNQMIDILSGTKYKIKQFRIVCDMLDHIKRSNRN AVPTEVLLLILRQYTEKHLTHLQKFAKKKRIRVKTQPEINAFNLLLDALCKCSLVEDA EVLFNRMKTRVKPDANSYNILFFGWCRVRNPKRGMTVLEAMIQLGHTPDNFTYNTAID AFCKAGMVSEAAELFEFMRTKGSTMSSPTAKTYAIMTVALIQDNRMEECFELIGHMIN SGCLPDVSTYKELIEGMCSAGKIEEAYKFLEEMGNKGYPPDIVSYNCFLKVLCDNMKS DEALRLYQRMIDVGCVPSVQTYNMLISMFFQMGDLDGVLETWQEMDNRGCAQDIETYC IMIDGLFSCNKVEDACFLLEDVVNKGLKLPYPKFDSFLMQLSTIGNLQAIQKLSDHMR KFYNPAMARRFALHQKRKSMRLRGK" mobile_element complement(6329410..6329969) /note="source:CACAO_M_E85112_F15_scaffold_10 2207 2766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6330267..6332472) /note="source:CACAO_M_E85112_F15_scaffold_10 1 2206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6332473..6335165 /note="source:CACAO_M_E44928_F73_scaffold_6 25 2723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6346656..6347060 /note="source:INTACT481_F226_scaffold_1-int 9784 10230" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6347255..6347696 /note="source:INTACT481_F226_scaffold_1-int 10476 10927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6350572..6354355 /note="source:INTACT481_F226_scaffold_1-int 1136 4905" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6354355..6357073) /note="source:INTACT212_F171_scaffold_10-int 108 2807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6355535..6357286 /note="source:INTACT135_F42_scaffold_4-int 1318 3080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6357289..6357804 /note="source:INTACT481_F226_scaffold_1-int 4899 5415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6357932..6360616) /note="source:CACAO_M_S_E145382_F335_scaffold_10 1 2685" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6362735..6365824) /locus_tag="TCM_043450" /note="dbxref CacaoGD:Thecc1EG043450" mRNA complement(join(6362735..6363224,6364137..6364238, 6364707..6364758,6365229..6365824)) /locus_tag="TCM_043450" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(join(6363157..6363224,6364137..6364238, 6364707..6364758,6365229..6365351)) /locus_tag="TCM_043450" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18932.1" /translation="MSANIIETAMAIGIQWSEAPRLLLHGNGSTGDYYAYLLEILIVI DLASIHWCLLSIGIGGDQQGIPKPIPRRVTHLNNTVEYHLAHIDWHARSGCGVGGKDK KVSEGERDKKKP" gene 6365886..6369814 /locus_tag="TCM_043451" /note="dbxref CacaoGD:Thecc1EG043451" mRNA join(6365886..6366179,6366505..6366683,6369647..6369814) /locus_tag="TCM_043451" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035534t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(6365909..6366179,6366505..6366668) /locus_tag="TCM_043451" /note="paralog of Thecc1EG035534t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18933.1" /translation="MLSVDTKLQTKNGVKYIYNKIFKIIIIIIIIMKNEKERREVRLA GCGRTLPGTSLTCQTRIFRIWQGSGIAPLMPRDKAMESAPSRAQKSGGIKLGLFAAAV ERGRKQAERRYGRELGSLPVGDDLRKEEKGGIFREKGKVPPA" mobile_element 6365975..6366126 /note="source:CACAO_M_S_E38315_F276_scaffold_4 19490 19643" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6367519..6367573) /note="source:INTACT674_F296_scaffold_6-int 5755 5892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6367574..6367819 /note="source:CACAO_M_S_E38315_F276_scaffold_4 20911 21134" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6367820..6367910) /note="source:INTACT674_F296_scaffold_6-int 5520 5754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6368218..6369115 /note="source:CACAO_M_S_E38315_F276_scaffold_4 21053 21937" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(6369686..6372709) /locus_tag="TCM_043452" /note="dbxref CacaoGD:Thecc1EG043452" mRNA complement(join(6369686..6369970,6370160..6370191, 6371194..6371455,6372478..6372709)) /locus_tag="TCM_043452" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g07740.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004007t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc13291t1_G3" CDS complement(join(6369759..6369970,6370160..6370191, 6371194..6371450)) /locus_tag="TCM_043452" /note="paralog of Thecc1EG004007t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18934.1" /translation="MDANSYWYLDSASATHICYQKDCFDLLQEVVVGNLTLGNKSIVK VMGIGVVKIKMFDGVVRSLGGVAYVPKMRKNLISLSLLDSKGSDITLFFNVKGNNQQM ADSEEGGQTGPVDMLESNGEHSPIIERSASQTTSENKFVSIAACPQDRMEAYIENPPN LESASS" mobile_element complement(6370211..6372799) /note="source:INTACT575_F74_scaffold_1-int 1 2593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6378541..6378673) /note="source:scaffold_2_CACTA_0281 4733 4865" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6378983..6379426) /note="source:scaffold_5_CACTA_0615 1810 2253" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6379419..6380409) /note="source:scaffold_5_CACTA_0615 185 1180" /mobile_element_type="transposon:TIR/CACTA" gene 6384586..6393080 /locus_tag="TCM_043454" /note="dbxref CacaoGD:Thecc1EG043454" mRNA join(6384586..6385380,6385837..6385959,6390129..6390296, 6390732..6393080) /locus_tag="TCM_043454" /product="Glycosyltransferase family protein 47" /inference="alignment:exonerate-protein:2:frave:gene09156" /inference="similar to AA sequence:ricco:27916.m000159" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3258t1" CDS join(6385015..6385380,6385837..6385959,6390129..6390296, 6390732..6392414) /locus_tag="TCM_043454" /note="dbxref ricco:27916.m000159" /codon_start=1 /product="Glycosyltransferase family protein 47" /protein_id="EOY18935.1" /db_xref="TAIR:AT5G04500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84WB7" /translation="MVVAGGGDSGGGGGSCCMRWWQQHNRNHYHHHNYNGHCNGNSNG GGGGGGRVVASGFVFCLFCFVIYGLIAGLYGWVILTPSFFTYERRGLPWLGCQEDNEG SWSIGLFFGHSPFSLKPIETADVWRNESAAWPVANPVITCASASDSGFPSNFVADPFL YVQGDVFYLFYETKNSFTMQGDIGVAKSIDKGATWQQLGIALDEDWHLSYPYVFNYLG QIYMMPESSQKGELRLYRAINFPLQWELDRIIIKKPLIDSFIINHDGEYWLFGSDHSS FGTKKNGQLEIWYSDSPLGPWKPHKKNPIYNFDRSLGARNGGRPFRYNGNLYRIGQDC GETYGRRVRIFKVEVLTKADYKEVEVPFLFEESRKGRNAWNGARYHHLDVQQLGSGEW VGVMDGDRVPSGDSVHRFLLGCASVAAVAGLVVLLGVLQGAVNCIIPLNWCADHSGKR SDTLSAWERANLFSSKVRRFCSRLNRVPSFLRGRIKPNTYTGRLVLALVFAIGVALSC AGVTFIYGGNGAEEPYSWKGHYSQFTLLTMTYDARLWNLKMYVKHYSRCASVKEIVVV WNKGIPPKLSEFDSAVPVRIRVENQNSLNNRFKMDPFIKTRAVLELDDDIMMTCDDVE RGFMVWRQHPDRIVGFYPRFVDGSRLEYKGEKYARRNKGYNMILTGAAFMDSHVAFRR YWSEQGKEGREVVDKYFNCEDVLLNFLYANASSSKTVEYVRPAWAIDTSKFSGAAISR NTKVHYKVRSDCLMKFTDMYGSLAGRRWEFDGRKDGWDL" mobile_element 6393728..6393829 /note="source:CACAO_on_E59_A_scaffold_8 3124 3222" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 6394786..6402042 /locus_tag="TCM_043455" /note="dbxref CacaoGD:Thecc1EG043455" mRNA join(6394786..6395157,6396552..6396732,6396896..6396948, 6397388..6397489,6397558..6397666,6397758..6397836, 6398130..6398295,6400184..6400318,6400424..6400587, 6400920..6401142,6401432..6402042) /locus_tag="TCM_043455" /product="3-phosphoinositide-dependent protein kinase" /inference="alignment:exonerate- protein:2:ricco:27428.m000112" /inference="similar to AA sequence:ricco:27428.m000112" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3343t1" CDS join(6394945..6395157,6396552..6396732,6396896..6396948, 6397388..6397489,6397558..6397666,6397758..6397836, 6398130..6398295,6400184..6400318,6400424..6400587, 6400920..6401142,6401432..6401515) /locus_tag="TCM_043455" /note="dbxref ricco:27428.m000112" /codon_start=1 /product="3-phosphoinositide-dependent protein kinase" /protein_id="EOY18936.1" /db_xref="TAIR:AT3G10540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XF67" /translation="MLAMEKDFDSKLRIQGTNNNDDNNSSNTSSNSAASNSVQRSKSF AFRAPLESFTIQDFELGKIYGVGSYSKVVRAKKKDTGMVYALKIMDKKFITKENKTAY VKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGCLSEDDARF YAAEVVDALEYIHNMGLIHRDIKPENLLLTTDGHIKIADFGSVKPMQDSRITVLPNAA SDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQ RIIARDIRFPNYFSEEARDLIDRLLDIDPSRRPGAGADGYAALKMHPFFRGVDWSNLR AQTPPRLALETGAQSGEGDDHNDSSWNPTHIGDGSARQNDGNGGASSSESSGHITRLA SIDSFDSKWQQFLDPGESVLMISMVKKLQKLSSKKVQLILTNKPKLIYVDPSKLVVKG NIIWSDNSNDLSVQVTSPSHFKICTPKKVLSFEDAKQRAWQWKKAIEGLQNQ" mobile_element 6398839..6398911 /note="source:scaffold_4_CACTA_0511 15688 15763" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6402702..6404253) /note="source:CACAO_M_E33977_F20_scaffold_4 14946 16543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6404090..6405643 /note="source:CACAO_Mutator_E1410_scaffold_6 99 1662" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6405677..6405976) /note="source:scaffold_5_CACTA_0614 6117 6409" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6405806..6406049) /note="source:CACAO_M_E52694_F25_scaffold_8 4852 5093" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6406219..6406315) /note="source:scaffold_5_CACTA_0614 5539 5635" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6406701..6407116) /note="source:scaffold_5_CACTA_0614 5158 5573" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6407076..6407511 /note="source:INTACT345_F202_scaffold_1-int 1385 1847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6407124..6407283 /note="source:CACAO_M_E44210_F112_scaffold_5 11294 12821" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6408824..6410244) /note="source:CACAO_Mutator_E1012_scaffold_5 5658 7090" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6409975..6411995 /note="source:CACAO_Mutator_E1888_scaffold_9 2151 4979" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6412149..6412804) /note="source:CACAO_M_E33977_F20_scaffold_4 14915 15580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6412527..6412917 /note="source:CACAO_Mutator_E1410_scaffold_6 5 385" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6413444..6413564) /note="source:CACAO_Mutator_E1410_scaffold_6 426 546" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6413558..6413673 /note="source:CACAO_Mutator_E161_scaffold_1 5878 5993" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6413673..6413713 /note="source:CACAO_Mutator_E161_scaffold_1 3921 3961" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6413683..6413743) /note="source:CACAO_M_E58819_F24_scaffold_9 335 413" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6413741..6413780 /note="source:CACAO_Mutator_E161_scaffold_1 6073 6112" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6413763..6415051 /note="source:scaffold_1_CACTA_0009 9449 10739" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6415063..6417854 /note="source:scaffold_1_CACTA_0009 10712 13833" /mobile_element_type="transposon:TIR/CACTA" gene 6417969..6430029 /locus_tag="TCM_043458" /note="dbxref CacaoGD:Thecc1EG043458" mRNA join(6417969..6418059,6418186..6418604,6418695..6418762, 6418932..6419087,6419194..6419403,6419997..6420176, 6420734..6421157) /locus_tag="TCM_043458" /product="Phosphorylase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043459t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034674001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3331t2" CDS join(6418313..6418604,6418695..6418762,6418932..6419087, 6419194..6419403,6419997..6420176,6420734..6420901) /locus_tag="TCM_043458" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043459t1" /codon_start=1 /product="Phosphorylase family protein isoform 1" /protein_id="EOY18937.1" /db_xref="Phytozome:GSVIVT01034674001" /db_xref="TAIR:AT4G24350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94K59" /translation="MEVLDLLNLHLGPPLSLRLTMAAKHVKPCLLLVLIFSAYVCVSA EPNNRKKSLNIIKQLNRRGPYIGLITVIRTEENAFFATGSFRPDPKYPFVDLSGRRFR IGKVHGKKVIFVRCGVGMVNAAAATQQMLDLFDVEGIIHFGIAGNVNNSMSIGDVTIP SQVAHTGIWDWLNPQGTVDQDDVAQLDIGSYNVPTGSGANLLGHIGYRKEQFFSKSGE PNIAQSLVWAKTSPQWLQLASNFGELILEQCVNSSLCLPQKPKLVVGLRASTANIFVD NAAYRDFLFQTFHISSVDMESAAVVMTSLSNGFPLIVIRGLSDLAGRQRGENAIKAFG SLAAVNAAKAVLAFIAKLPGYAR" mRNA join(6418318..6418604,6418695..6418762,6418932..6419087, 6419194..6419403,6419997..6420176,6429640..6430029) /locus_tag="TCM_043458" /product="Phosphorylase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034674001.2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043459t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034674001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3331t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3331t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc321t1" CDS join(6418373..6418604,6418695..6418762,6418932..6419087, 6419194..6419403,6419997..6420176,6429640..6429807) /locus_tag="TCM_043458" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043459t1" /codon_start=1 /product="Phosphorylase superfamily protein isoform 2" /protein_id="EOY18938.1" /db_xref="Phytozome:GSVIVT01034674001" /db_xref="TAIR:AT4G24350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94K59" /translation="MAAKHVKPCLLLVLIFSAYVCVSAEPNNRKKSLNIIKQLNRRGP YIGLITVIRTEENAFFATGSFRPDPKYPFVDLSGRRFRIGKVHGKKVIFVRCGVGMVN AAAATQQMLDLFDVEGIIHFGIAGNVNNSMSIGDVTIPSQVAHTGIWDWLNPQGTVDQ DDVAQLDIGSYNVPTGSGANLLGHIGYRKEQFFSKSGEPNIAQSLVWAKTSPQWLQLA SNFGELILEQCVNSSLCLPQKPKLVVGLRASTANIFVDNAAYRDFLFQTFHISSVDME SAAVVMTSLSNGFPVIVIRGLSDLAGQQQGENAVKKFGSLAALNTAKAVLGFIDNLPG HAY" gene 6421093..6430117 /locus_tag="TCM_043459" /note="dbxref CacaoGD:Thecc1EG043459" mRNA join(6421093..6421153,6427111..6427563,6427656..6427723, 6427898..6428053,6428152..6428361,6428889..6429068, 6429640..6430117) /locus_tag="TCM_043459" /product="Phosphorylase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034674001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043458t2" /inference="similar to AA sequence:Phytozome:GSVIVT01034674001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3331t3" mobile_element complement(6424898..6425266) /note="source:scaffold_5_CACTA_0614 91 436" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6426162..6426229 /note="source:INTACT1432F_F101_scaffold_9-int 12217 12285" /mobile_element_type="retrotransposon:LTR/Unclassified" CDS join(6427332..6427563,6427656..6427723,6427898..6428053, 6428152..6428361,6428889..6429068,6429640..6429807) /locus_tag="TCM_043459" /note="paralog of Thecc1EG043458t2" /codon_start=1 /product="Phosphorylase superfamily protein" /protein_id="EOY18939.1" /db_xref="Phytozome:GSVIVT01034674001" /db_xref="TAIR:AT4G24340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GW53" /translation="MAAKQVKPCLVLVLVFSLLVFVSAVSKNRIKSLHVIKELNRRGP YIGLITVFSTEEDAFFATGSFRSDPKHPFVDLSGRRFRIGKVRGRKAIYVRCGIGMIN AAAATQQMLDLFDVKGIIHFGIAGNINNSMSIGDVTIPKQVAHTGIWDWVNTNGAVDS ADVSQLDFGSYNVPKGNGSNLLGHIGYSKEQFFSESGEPNIAESLVWAKISPHWLQLA SNLEGMKLEQCVNSSLCLPEKPKLVVGLRASTANIFVDNAAYRDFLFKKFEVSSADME TAAVVMTSLSNGFPVIVIRGLSDLAGQQQGENAVKKFGSLAALNTAKAVLGFIDNLPG HAY" gene complement(6430424..6433999) /locus_tag="TCM_043460" /note="dbxref CacaoGD:Thecc1EG043460" mRNA complement(join(6430424..6431240,6431987..6432166, 6432448..6433999)) /locus_tag="TCM_043460" /product="Cysteine/Histidine-rich C1 domain family protein" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc1323t1_C2" CDS complement(join(6431157..6431240,6431987..6432166, 6432448..6433521)) /locus_tag="TCM_043460" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein" /protein_id="EOY18940.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MEQIRHFSHQHMLNLVEVGKDTDAERCIGCGSFFHGPAYTCKQC PGFFFHKSCVELPRQIKNHAFHQEHPLTLYPMDSFVCDGCGEVCAGLFYWCGLCIFSL DVKCATLNQELAKNKAQKGKEIKILINHFSHNHQLTRCIFLSPPGEKNEVPCMACKQN IHGKLIYSCQSCLFVLHESCLINMPEQIKSSFHPEHPLLAQPLARGSVVECGGCSDGV YGISFSCSECNFDFHVSCAKYQTRAIKHNCHVHPLLLLEKSNIRYRQRSLKCKECGEY CEEAFLCRKKCKFYIHLECVPLPSIVKHIRHLHLLKLKNSVVEDDCNEYYCDVCEAKR NPNHSVYFCEECNYITHIHCVMSEVEPPEWISSYLVPRPGKEKPDKGDQITSKMDGKL LEGEGIKHGRTEEKSILDKLEAEIEESYGNLYMNWAGILSSETGSIRDPGHWG" gene complement(6434052..6437212) /locus_tag="TCM_043461" /note="dbxref CacaoGD:Thecc1EG043461" mRNA complement(join(6434052..6434903,6435255..6435344, 6435615..6435688,6435764..6435920,6436038..6436197, 6436273..6436503,6436783..6437212)) /locus_tag="TCM_043461" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400023122.2" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; weak similarity to Polynucleotidyl transferase, ribonuclease H-like superfamily protein" mobile_element complement(6434179..6434228) /note="source:CACAO_LINE_E_130_scaffold_5 3498 3547" /mobile_element_type="retrotransposon:LINE/L1" CDS complement(join(6434356..6434903,6435255..6435344, 6435615..6435688,6435764..6435920,6436038..6436197, 6436273..6436503,6436783..6436998)) /locus_tag="TCM_043461" /note="weak similarity to Polynucleotidyl transferase, ribonuclease H-like superfamily protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18941.1" /db_xref="TAIR:AT5G42905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4NCH2" /translation="MDFFKHLYSKESNEILSYPIRNGFFKLSEEAYDFMGCSVDVDEV REALFEMKPLKALGLDSFQALFFQSQWQEVMHFFHNKQGRKGWMMIKIDLEKAYDQLK WEFIHDSLLEARIPDNIVDISVRSWSCCSSHISGNGVCSDKFFPSRGAVEQEVWKPIR LGRHGPALTHLFFVDDLRLLAEALKTQMEVIKVSWRTFVPFSVPKGPFVAWQKSANSY KCLVDKVKSQLSAWKASSLSSAGRLTVIKSVLSSIPLHGENHSKKVHLLRWSTLCKPK VQGGEVPLLNTTVAMRLMVDKREQVRDYMLSTGECPVSVALWMRLLPQNNKYQFFQAT WSEWLYVNLSQSNPFSLDIPCNILFGIACWHIWKWRNLFVFEGREISIEGQLNIIKYM AVATHNAWLNPLLQSGKPAKREEQLVGWTPPPVGWITVNFDGVYRSRTGAASVSGVLR NSDGTWIVGYACKLSTSTALYRVVGHCSRHPASLGARVSQH" mobile_element complement(6437021..6442003) /note="source:INTACT286_F67_scaffold_10-int 1 4983" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6445804..6445878) /note="source:CACAO_M_E42641_F14_scaffold_5 944 1025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6445942..6446023 /note="source:INTACT24F_F12_scaffold_1-int 271 348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6448642..6448978) /note="source:CACAO_M_E85923_F17_scaffold_12 14187 14527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6448979..6451658 /note="source:CACAO_M_E3746_F14_scaffold_1 1 2706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6451700..6452656 /note="source:CACAO_M_E11309_F144_scaffold_2 1617 2631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6454746..6454829 /note="source:CACAO_M_S_E64023_F13_scaffold_5 746 825" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6457208..6459040 /locus_tag="TCM_043464" /note="dbxref CacaoGD:Thecc1EG043464" mRNA join(6457208..6457264,6457903..6457978,6458109..6458210, 6458307..6458455,6458692..6459040) /locus_tag="TCM_043464" /product="60S ribosomal protein L24-1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12330.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015113t1" /inference="similar to AA sequence:frave:gene13307" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03976t00001; inference alignment:Newbler:10:TSA:cgbaB_g04182t00001_C1" mRNA join(6457208..6457264,6457704..6457754,6457903..6457978, 6458109..6458210,6458307..6458455,6458692..6459039) /locus_tag="TCM_043464" /product="60S ribosomal protein L24-1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s12330.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015113t1" /inference="similar to AA sequence:frave:gene13307" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04182t00001_C1; inference alignment:Newbler:10:TSA:cgbaB_g04182t00001_C1" CDS join(6457254..6457264,6457704..6457754,6457903..6457978, 6458109..6458210,6458307..6458455,6458692..6458848) /locus_tag="TCM_043464" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene13307; paralog of Thecc1EG015113t1" /codon_start=1 /product="60S ribosomal protein L24-1 isoform 1" /protein_id="EOY18942.1" /db_xref="TAIR:AT2G36620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42347" /translation="MVLNVCYTVLSFMNFISLRGRTELCRFSGAKIYPGKGIRFVRSD SQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKRRRTTKKPYSRSI VGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAELMAKTQKTQGK GNVPKGAAPKGPKLGGGGGKR" CDS join(6457254..6457264,6457903..6457978,6458109..6458210, 6458307..6458455,6458692..6458848) /locus_tag="TCM_043464" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene13307; paralog of Thecc1EG015113t1" /codon_start=1 /product="60S ribosomal protein L24-1 isoform 2" /protein_id="EOY18943.1" /db_xref="TAIR:AT2G36620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42347" /translation="MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHN RLKPSKLTWTAMYRKQHKKDIAAEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPE VRDAAREAALREIKERIKKTKDEKKAKKAELMAKTQKTQGKGNVPKGAAPKGPKLGGG GGKR" gene complement(6459699..6466205) /locus_tag="TCM_043465" /note="dbxref CacaoGD:Thecc1EG043465" mRNA complement(join(6459699..6459922,6460774..6461849, 6466140..6466205)) /locus_tag="TCM_043465" /product="Matrixin family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040549t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02780.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc3165t1" CDS complement(6460983..6461849) /locus_tag="TCM_043465" /note="paralog of Thecc1EG040549t1" /codon_start=1 /product="Matrixin family protein, putative" /protein_id="EOY18944.1" /db_xref="Phytozome:POPTR_0008s02780.1" /db_xref="TAIR:AT1G59970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL58" /translation="MLLSTIQSKPTTRTFKIFQSLQGCHKGHTVEGLCELKQYFKKLG YLNYDHASYNAYKHGNDNEFDDHLESAIKAYQVNYKLNATGNLDADTVKQMMKSRCGI ADVMNSNNSRSIYGIGASRYEFFLGNPKWPLSKTHLTYNFHSSVEVPLAENVRSVCVR AFQRWANVSRFTFEEVAEYYVADIEIGFHSGEHGDGNPFDGPQGTLAHASPPTDGKLH YDADEDWSTNPGPDEVDLESVTVHEIGHLLGLQHSLVPEAVMYAYFDSGMIKRKLHMD DVHGIRALYGLL" mobile_element 6466217..6466418 /note="source:INTACT160_F4_scaffold_7-int 6750 6952" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6466768..6468505) /note="source:CACAO_M_S_E145379_F60_scaffold_10 1 1725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6471057..6473711) /note="source:INTACT24F_F12_scaffold_1-int 1253 3935" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6475715..6477179) /locus_tag="TCM_043468" /note="dbxref CacaoGD:Thecc1EG043468" mRNA complement(join(6475715..6476013,6476211..6476477, 6476746..6476815,6477074..6477179)) /locus_tag="TCM_043468" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022913t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage" CDS complement(join(6475853..6476013,6476211..6476477, 6476746..6476770)) /locus_tag="TCM_043468" /note="paralog of Thecc1EG022913t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18945.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XX57" /translation="MFFACKDGVASALDNDYGILLVFEVLYERRCRSPIGWLEVEERK LLQPEMVQAIVERVQIIREQMLAAQSRQKSYADNICKPLEFDVGNYVFLKMSPLPLED RLKYQEQPMAILDRQVKRFRSKDIFMVKVLWQNHLVEEVTWELEVECK" gene complement(6479533..6487234) /locus_tag="TCM_043469" /note="dbxref CacaoGD:Thecc1EG043469" mRNA complement(join(6479533..6479922,6480032..6480172, 6480253..6480588,6480661..6481033,6481602..6482058, 6487216..6487234)) /locus_tag="TCM_043469" /product="Mitochondrial transcription termination factor family protein" /inference="similar to AA sequence:ricco:30131.m007160" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage" CDS complement(join(6480388..6480588,6480661..6481033, 6481602..6481726)) /locus_tag="TCM_043469" /note="dbxref ricco:30131.m007160" /codon_start=1 /product="Mitochondrial transcription termination factor family protein" /protein_id="EOY18946.1" /db_xref="TAIR:AT5G07900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HDG2" /translation="MTGWNNKIIKHVECSLEEPQIIFSFIKAKGNFAEVDRNENPRGV SSSNLARILSSHPYVLRCSLDSHIIPNFNFFKDLTGCDDDKVLVAYKRFPAVLERDFQ SLVAPNLALLRDCGVPKSNIVGKRVVYPRVFAQNHGKFERAVEEVKKLGFNPLKEVFL STLKALIASAFGKFPICLMLSEHKVKAAMNFYVNTMGLKSSYIANRPLLLGLSLEKEL FLGVQLFKFCCPKV" mobile_element complement(6487225..6489079) /note="source:CACAO_M_E85107_F4_scaffold_10 1 1855" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(6488623..6498236) /locus_tag="TCM_043470" /note="dbxref CacaoGD:Thecc1EG043470" mRNA complement(join(6488623..6488658,6495256..6495582, 6495877..6495969,6498060..6498236)) /locus_tag="TCM_043470" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009712t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 6489970..6490252 /note="source:CACAO_M_E5800_F12_scaffold_2 4581 4860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6490355..6490506 /note="source:CACAO_M_E42641_F14_scaffold_5 7810 7960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6490398..6490627) /note="source:CACAO_M_E22484_F328_scaffold_3 7342 7571" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(6495274..6495582,6495877..6495951)) /locus_tag="TCM_043470" /note="paralog of Thecc1EG009712t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18947.1" /translation="MNCYNYQWPSEQFMPRRVASEYELNSQVKASILEKKPTLKKMFM QHMANMNVVIQRNESSTRNIETHVSQLINDINNRAQEILPNDIEPNPRGEEYGKHFDE VNGKNVVDDGDQVDQKNLPSKQIQD" mobile_element complement(6496756..6496835) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1770 1849" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6510163..6525307 /locus_tag="TCM_043471" /note="dbxref CacaoGD:Thecc1EG043471" mRNA join(6510163..6510354,6512863..6512888,6513070..6513183, 6513931..6513981,6514394..6514448,6514516..6514549, 6515631..6515680,6515784..6515828,6516007..6516080, 6516385..6516454,6517876..6518064,6518165..6518209, 6518315..6518388,6519147..6519216,6519377..6519775, 6521227..6521287,6521403..6521447,6521537..6521620, 6522560..6522636,6522711..6522773,6523204..6523274, 6523376..6523436,6523874..6523934,6524022..6524102, 6524481..6525307) /locus_tag="TCM_043471" /product="Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23411" /inference="similar to AA sequence:Phytozome:GSVIVT01034677001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc221t4_C2" CDS join(6510250..6510354,6512863..6512888,6513070..6513183, 6513931..6513981,6514394..6514448,6514516..6514549, 6515631..6515680,6515784..6515828,6516007..6516080, 6516385..6516454,6517876..6518064,6518165..6518209, 6518315..6518388,6519147..6519216,6519377..6519775, 6521227..6521287,6521403..6521447,6521537..6521620, 6522560..6522636,6522711..6522773,6523204..6523274, 6523376..6523436,6523874..6523934,6524022..6524102, 6524481..6524539) /locus_tag="TCM_043471" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase isoform 1" /protein_id="EOY18948.1" /db_xref="Phytozome:GSVIVT01034677001" /db_xref="TAIR:AT3G52200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQF7" /translation="MSSRAITMFERRTFPLQVQKTQSLKQLYPILVRYKKYFRIVVDR ALSMALSRLRNPVISRAAPSLFKARFLSSYASPRSLSRTLNVESPFKDFNGSLLRPNS LSTIIGVCSTSSILKLQIGVRHFSSADLPEHTVLGMPALSPTMSQGNIAKWKKKEGDK IEVGDVLCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADNIQKI PSSLGSGSDVEEKTAHQDVRNSGKDEEQSSVNINALDLPPHIVIGMPALSPTMNQGNI FKWRKKEGDKIEVGDVICEIETDKATLEFESLEEGYLAKILAPEGSKDVAVGEPIAVT VENPDDIEAVKTSVGGGSGVKKQKPTHHESKSEVREQKSGFTKISPSAKLLISEYGLD ASSIKASGPHGTLLKGDVLAAIKSGKGSSKISSSEKIKTSPEASPQKSTSARLESKTQ PQQSDSFEDLPNTQIRKIIAKRLLESKQNTPHLYLSSDVILDPLLSFRKELKEKHDIK VSVNDIVIKAVAIALKNVPEANAYWDVEKGEIILCDSVDISIAVATEKGLMTPIVRNA DQKSISSISSEVKQLAEKARAGKLLPNEFQGGTFSISNLGMFPVDHFCAIINPPQAGI LAVGRGNKFVEPVVGSDGIERPAVVTKMNLTLSADHRVFDGEVGGAFLSALQSNFSDI RRLLL" mRNA join(6512862..6513183,6513931..6513981,6514394..6514448, 6514516..6514549,6515631..6515680,6515784..6515828, 6516007..6516080,6516385..6516454,6517876..6518064, 6518165..6518209,6518315..6518388,6519147..6519216, 6519377..6519775,6521227..6521287,6521403..6521447, 6521537..6521620,6522560..6522637,6524021..6524102, 6524481..6524965) /locus_tag="TCM_043471" /product="Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase isoform 3" /inference="alignment:exonerate-protein:2:frave:gene23411" /inference="similar to AA sequence:Phytozome:GSVIVT01034677001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7696t7_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc218t5; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc221t4_C2" mRNA join(6512862..6513183,6513931..6513981,6514394..6514448, 6514516..6514549,6515631..6515680,6515784..6515828, 6516007..6516080,6516385..6516454,6517876..6518064, 6518165..6518209,6518315..6518388,6519147..6519216, 6519377..6519775,6521227..6521287,6521403..6521447, 6521537..6521620,6522560..6522637,6524479..6524965) /locus_tag="TCM_043471" /product="Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase isoform 4" /inference="alignment:exonerate-protein:2:frave:gene23411" /inference="similar to AA sequence:Phytozome:GSVIVT01034677001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7727t6_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc221t4_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc218t5" CDS join(6513080..6513183,6513931..6513981,6514394..6514448, 6514516..6514549,6515631..6515680,6515784..6515828, 6516007..6516080,6516385..6516454,6517876..6518064, 6518165..6518209,6518315..6518388,6519147..6519216, 6519377..6519775,6521227..6521287,6521403..6521447, 6521537..6521620,6522560..6522637,6524479..6524720) /locus_tag="TCM_043471" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase isoform 4" /protein_id="EOY18951.1" /db_xref="Phytozome:GSVIVT01034677001" /db_xref="TAIR:AT3G52200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQF7" /translation="MALSRLRNPVISRAAPSLFKARFLSSYASPRSLSRTLNVESPFK DFNGSLLRPNSLSTIIGVCSTSSILKLQIGVRHFSSADLPEHTVLGMPALSPTMSQGN IAKWKKKEGDKIEVGDVLCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAI TVEDADNIQKIPSSLGSGSDVEEKTAHQDVRNSGKDEEQSSVNINALDLPPHIVIGMP ALSPTMNQGNIFKWRKKEGDKIEVGDVICEIETDKATLEFESLEEGYLAKILAPEGSK DVAVGEPIAVTVENPDDIEAVKTSVGGGSGVKKQKPTHHESKSEVREQKSGFTKISPS AKLLISEYGLDASSIKASGPHGTLLKGDVLAAIKSGKGSSKISSSEKIKTSPEASPQK STSARLESKTQPQQSDSFEDLPNTQIRKIIAKRLLESKQNTPHLYLSSDVILDPLLSF RKELKEKHDIKVSVNDIVIKAVAIALKNVPEANAYWDVEKGEIILCDSVDISIAVATE KEVHFFQHYNLTSVIFGGFFSDNISSSKFWRDQLWWRVSFLKIVNNSWKGSCYLFQNP LRQRICCAILVTKILSITRTPVM" CDS join(6513080..6513183,6513931..6513981,6514394..6514448, 6514516..6514549,6515631..6515680,6515784..6515828, 6516007..6516080,6516385..6516454,6517876..6518064, 6518165..6518209,6518315..6518388,6519147..6519216, 6519377..6519775,6521227..6521287,6521403..6521447, 6521537..6521620,6522560..6522637,6524021..6524028) /locus_tag="TCM_043471" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase isoform 3" /protein_id="EOY18950.1" /db_xref="Phytozome:GSVIVT01034677001" /db_xref="TAIR:AT3G52200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQF7" /translation="MALSRLRNPVISRAAPSLFKARFLSSYASPRSLSRTLNVESPFK DFNGSLLRPNSLSTIIGVCSTSSILKLQIGVRHFSSADLPEHTVLGMPALSPTMSQGN IAKWKKKEGDKIEVGDVLCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAI TVEDADNIQKIPSSLGSGSDVEEKTAHQDVRNSGKDEEQSSVNINALDLPPHIVIGMP ALSPTMNQGNIFKWRKKEGDKIEVGDVICEIETDKATLEFESLEEGYLAKILAPEGSK DVAVGEPIAVTVENPDDIEAVKTSVGGGSGVKKQKPTHHESKSEVREQKSGFTKISPS AKLLISEYGLDASSIKASGPHGTLLKGDVLAAIKSGKGSSKISSSEKIKTSPEASPQK STSARLESKTQPQQSDSFEDLPNTQIRKIIAKRLLESKQNTPHLYLSSDVILDPLLSF RKELKEKHDIKVSVNDIVIKAVAIALKNVPEANAYWDVEKGEIILCDSVDISIAVATE KGD" mRNA join(6514389..6514448,6514516..6514549,6515631..6515680, 6515784..6515828,6516007..6516080,6516385..6516454, 6517876..6518064,6518165..6518209,6518315..6518388, 6519147..6519216,6519377..6519775,6521227..6521287, 6521403..6521447,6521537..6521620,6522560..6522636, 6522711..6522773,6523204..6523274,6523376..6523436, 6523874..6523934,6524022..6524102,6524481..6524935) /locus_tag="TCM_043471" /product="Dihydrolipoamide acetyltransferase, long form protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene23411" /inference="similar to AA sequence:Phytozome:GSVIVT01034677001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3540t2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc221t4_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc218t5" CDS join(6515657..6515680,6515784..6515828,6516007..6516080, 6516385..6516454,6517876..6518064,6518165..6518209, 6518315..6518388,6519147..6519216,6519377..6519775, 6521227..6521287,6521403..6521447,6521537..6521620, 6522560..6522636,6522711..6522773,6523204..6523274, 6523376..6523436,6523874..6523934,6524022..6524102, 6524481..6524539) /locus_tag="TCM_043471" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Dihydrolipoamide acetyltransferase, long form protein isoform 2" /protein_id="EOY18949.1" /db_xref="Phytozome:GSVIVT01034677001" /db_xref="TAIR:AT3G52200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQF7" /translation="MPALSPTMSQGNIAKWKKKEGDKIEVGDVLCEIETDKATLEFES LEEGFLAKILVPEGSKDVPVGQPIAITVEDADNIQKIPSSLGSGSDVEEKTAHQDVRN SGKDEEQSSVNINALDLPPHIVIGMPALSPTMNQGNIFKWRKKEGDKIEVGDVICEIE TDKATLEFESLEEGYLAKILAPEGSKDVAVGEPIAVTVENPDDIEAVKTSVGGGSGVK KQKPTHHESKSEVREQKSGFTKISPSAKLLISEYGLDASSIKASGPHGTLLKGDVLAA IKSGKGSSKISSSEKIKTSPEASPQKSTSARLESKTQPQQSDSFEDLPNTQIRKIIAK RLLESKQNTPHLYLSSDVILDPLLSFRKELKEKHDIKVSVNDIVIKAVAIALKNVPEA NAYWDVEKGEIILCDSVDISIAVATEKGLMTPIVRNADQKSISSISSEVKQLAEKARA GKLLPNEFQGGTFSISNLGMFPVDHFCAIINPPQAGILAVGRGNKFVEPVVGSDGIER PAVVTKMNLTLSADHRVFDGEVGGAFLSALQSNFSDIRRLLL" gene complement(6524863..6533328) /locus_tag="TCM_043472" /note="dbxref CacaoGD:Thecc1EG043472" mRNA complement(join(6524863..6525269,6533110..6533328)) /locus_tag="TCM_043472" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage" CDS complement(6524955..6525254) /locus_tag="TCM_043472" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18952.1" /translation="MTTRGMKERKVALCRVQLWLHSMKVVCHICRWMEMVFDFSRSEP FPAMGGLSVARISEFNEHLCLGRIRNRFYTAKANFKAIILSKLAYCVDEREAGKG" mobile_element complement(6530465..6531067) /note="source:CACAO_M_E49872_F15_scaffold_7 2411 3013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6531601..6533787 /note="source:CACAO_M_E34067_F15_scaffold_4 962 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6539290..6539371 /note="source:INTACT126_F14_scaffold_3-int 1092 1172" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6539772..6542996) /locus_tag="TCM_043473" /note="dbxref CacaoGD:Thecc1EG043473" mRNA complement(join(6539772..6540385,6540578..6540826, 6540911..6541049,6541152..6541370,6541494..6541866, 6541967..6542222,6542394..6542996)) /locus_tag="TCM_043473" /product="3R-linalool synthase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s02810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031738t1" /inference="similar to AA sequence:ricco:30156.m001703" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1826t1" mRNA complement(join(6539895..6540385,6540578..6541049, 6541152..6541370,6541494..6541866,6541967..6542222, 6542394..6542578)) /locus_tag="TCM_043473" /product="3R-linalool synthase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s02810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031738t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s02810.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9775t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1826t1" CDS complement(join(6540095..6540385,6540578..6540826, 6540911..6541049,6541152..6541370,6541494..6541866, 6541967..6542222,6542394..6542525)) /locus_tag="TCM_043473" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30156.m001703; paralog of Thecc1EG031738t1" /codon_start=1 /product="3R-linalool synthase, putative isoform 1" /protein_id="EOY18953.1" /db_xref="TAIR:AT3G25830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GAH0" /translation="MAPASQPLSHPKPISLQEEQRRSANYHPSIWDPSVIKSFTTPYT YEFHGTKLEELKQETDKLFASTKDTAALLKLIDSLRRLGAAYHFQKQIAEALTQLHVD RNVSINDLSTAALYFRLLREHGYRVSADIFEKFKGGDGKFMDSLSGDVEGLLCLDEAS FLGVQGEKILEQAKGFASESLKTLIGKLDKNKAKHVQQSLEVPLYWRMERIEARNFID SYQMDDTKSSVLLELAKLDYNLIQSAYQQELKELAEWWRELNFKEKLSFSRDRLMEIY FWATGLSFEPQYSKCRICFTKYACLATVVDDIYDIYGSLDELESFTKAVTGWDVKAVE ELPEYMRVMFSAISEFTNELARETSKDHGLDVLPYIHEQWAILCRAHITEARWFYGGH TPTFDEYIQNGWISIGSLGGLVLLCFVEADSIVEQFPHCLKDYSQLFYWSSLITRLSD DLGTSKAEMERGDIPKAVQSYVIEKGVSEEEARDHVKNLISDSWKKINEEIVDNTFPE VIVNLSKNMARTAQCMYQHGDGVGTSTGVTKDCIVSSILKPISI" CDS complement(join(6540866..6541049,6541152..6541370, 6541494..6541866,6541967..6542222,6542394..6542525)) /locus_tag="TCM_043473" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG031738t1" /codon_start=1 /product="3R-linalool synthase, putative isoform 2" /protein_id="EOY18954.1" /db_xref="Phytozome:POPTR_0007s02810.1" /db_xref="TAIR:AT4G16740.2" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GAH0" /translation="MAPASQPLSHPKPISLQEEQRRSANYHPSIWDPSVIKSFTTPYT YEFHGTKLEELKQETDKLFASTKDTAALLKLIDSLRRLGAAYHFQKQIAEALTQLHVD RNVSINDLSTAALYFRLLREHGYRVSADIFEKFKGGDGKFMDSLSGDVEGLLCLDEAS FLGVQGEKILEQAKGFASESLKTLIGKLDKNKAKHVQQSLEVPLYWRMERIEARNFID SYQMDDTKSSVLLELAKLDYNLIQSAYQQELKELAEWWRELNFKEKLSFSRDRLMEIY FWATGLSFEPQYSKCRICFTKYACLATVVDDIYDIYGSLDELESFTKAVTGWDVKAVE ELPEYMRVMFSAISEFTNELARETSKDHGLDVLPYIHEQVTSKAMEIKIKDSL" gene 6555510..6562146 /locus_tag="TCM_043474" /note="dbxref CacaoGD:Thecc1EG043474" mRNA join(6555510..6555617,6555701..6555779,6556859..6556953, 6557620..6557691,6557792..6557901,6558828..6558950, 6559047..6559139,6560771..6560839,6560998..6561086, 6561172..6561269,6561524..6562146) /locus_tag="TCM_043474" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034681001" /inference="similar to AA sequence:Phytozome:POPTR_0010s23930.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07625t00001" CDS join(6555516..6555617,6555701..6555779,6556859..6556953, 6557620..6557691,6557792..6557901,6558828..6558950, 6559047..6559139,6560771..6560839,6560998..6561086, 6561172..6561269,6561524..6561667) /locus_tag="TCM_043474" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /protein_id="EOY18955.1" /db_xref="Phytozome:POPTR_0010s23930.1" /db_xref="TAIR:AT3G52210.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUX8" /translation="MSGYPVPRAESTHHRLYELAKTALIKIFVHPYATVCDLYCGGGA DAEKWDGAQISHYIGIDGLSSGINEMREAWESQRKSFTSEFFEADPCIDNLETQLKEK AIQADLVCCLQHLQFGFETEEKARRLLNNVSSLLKPGGYFFGITPDSSTIWAKYQKNV EAYHNKNSSMKPNIVPNCIRSESYMITFEIEEEKFPLFGKKYQLKFASDASAEIHSLV HFPSLIRLAREAGLEYVEIQNLTEFYDDNRPQFAGMMMNAGPNLVDPRGRLLPRSYDV LGLYTTFIFQKPDPDVVPPIATPLLQDSSYNHDESEWQGAVWREEEKNGQAEQPPHGL GKISEQKGILGPGPAELRFSEAL" gene 6563276..6568974 /locus_tag="TCM_043476" /note="dbxref CacaoGD:Thecc1EG043476" mRNA join(6563276..6563437,6563560..6563821,6565014..6565335, 6565848..6565935,6566194..6566404,6566633..6566813, 6566902..6566964,6567109..6567692,6567755..6568205, 6568601..6568974) /locus_tag="TCM_043476" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene30122" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(6563331..6563437,6563560..6563821,6565014..6565335, 6565848..6565935,6566194..6566404,6566633..6566813, 6566902..6566964,6567109..6567248) /locus_tag="TCM_043476" /note="dbxref frave:gene30122" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18956.1" /translation="MAFGSFNAMASLVFNGENYLIWVVKMKAYLREFDLCAVSNSIFT RIMACENTKDVWDKLQEELHGSHRNREMQALNLLRELKVLKMKDNESIKEYSDKVMKV VNQLRLLWENLHEKRSMNKVLFVKYVASMEDETGKKIMNLRIDNGSIEFKDFLALKGI KHQLIVPCTPQQNGVCELKNRTIVKMTHCLLFEKSLPKSFWTEAANLSVYLLNLLPTR TLEAKSPYEVWHVNKLKSRLVAKGYSQVQGVDFMETFVSIVSENEAILYIKLPNGKVQ LIVSLYVNDLLIPGLDNDFLKEFKAQMKAEFEMTDLGEMSYFLGIEFKQMDDQIEPSV LHMKVVKRILRYIRGTLTFGLKFVRQGSNCLQGHCDSDCVGSKEDSKSTSSYYFSFAT NHALWLRKLLVDLGSEKYVVQMYKQLLGKRQVQLFQSQAGSKRDKFHGGVLKLEYISA TMEKRAE" gene complement(6568184..6605003) /locus_tag="TCM_043477" /note="dbxref CacaoGD:Thecc1EG043477" mRNA complement(join(6568184..6568356,6577380..6577528, 6597474..6597882,6598005..6598312,6604939..6605003)) /locus_tag="TCM_043477" /product="H0502G05.11 protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018184t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(6571887..6571975) /note="source:scaffold_2_CACTA_0261 11424 11513" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6572510..6572577 /note="source:CACAO_M_S_E119191_F3_scaffold_9 3360 3430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6572535..6578457) /note="source:CACAO_M_S_E17765_F76_scaffold_3 1 10841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6579690..6582627) /note="source:CACAO_Mutator_E1149_scaffold_5 355 3291" /mobile_element_type="transposon:TIR/Mutator" gene complement(6579952..6593765) /locus_tag="TCM_043479" /note="dbxref CacaoGD:Thecc1EG043479" mRNA complement(join(6579952..6580211,6580374..6580502, 6583002..6583054,6586499..6586682,6586815..6586880, 6591408..6591503,6591589..6592614,6593215..6593765)) /locus_tag="TCM_043479" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage" CDS complement(join(6580110..6580211,6580374..6580502, 6583002..6583054,6586499..6586682,6586815..6586880, 6591408..6591503,6591589..6592068)) /locus_tag="TCM_043479" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18958.1" /translation="MLTEEISRENEIMAPNQESYGQNQEITIAYRFSSKNKKKKIIAF KDKKEVRDKGDAKALNKTNLPRLASLDNIKKTRDELKSNGLVSSQITNFKTHTSKFKK YIMYFGGPSKTSDDGLSIKAKEMRLMVVDKAKNQTPIFDPGSLSFIGFGYHLDPHESK AYDNRRDIPIDTYYRNANRNPARLTYQLLSFPVQYRVSSILRCFSSVITCYSMHVLSW NCRGILNKKCHKNCKELVRTYAPNILVLLEIKCGEKGLVSTFAKKIGFDGLSMVLPTG LGRASTGGLIHNADDEWFGPPRESETQPTPKNGCVSDVKTCLWIWVIEQPWRSQWDTL TKILLMVIVYSLGLCNHNLTPLPIHFSGLGQFVDS" mobile_element 6586775..6587312 /note="source:CACAO_M_E22398_F15_scaffold_3 7759 8296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6589400..6591528) /note="source:CACAO_M_E71577_F15_scaffold_10 1 2124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6596193..6596909 /note="source:INTACT296_F13_scaffold_9-int 13744 14445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6596827..6596920) /note="source:scaffold_2_CACTA_0261 11422 11514" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(6597664..6597882,6598005..6598310)) /locus_tag="TCM_043477" /note="paralog of Thecc1EG018184t1" /codon_start=1 /product="H0502G05.11 protein, putative" /protein_id="EOY18957.1" /translation="MESSPNNQEMTVPTYVQELMKMLQASHKSMQVLEENNKRMIETI TQFTSSTVTTSQPQSMPTHNGQNAANMVNNKGNGGNGESMTNLFFNTTNPFIVGNFIT VATEPYPKDYTNQKFKQFNGKISDAQEHVMKFIKTLRVVGLDDDLKLNKFSKSLTEKD YTWYVNLNLGLVDS" mobile_element complement(6598875..6599029) /note="source:INTACT567_F258_scaffold_9-int 199 353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6601915..6601967 /note="source:INTACT701_F305_scaffold_10-int 1 57" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6603281..6609821 /note="source:CACAO_PIF_E119_scaffold_3 6784 13331" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6608917..6613826) /note="source:CACAO_PIF_E62_scaffold_2 11840 16708" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6613274..6614020) /note="source:CACAO_Mutator_E592_scaffold_3 8827 9542" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6614023..6614328 /note="source:CACAO_PIF_E119_scaffold_3 7814 8119" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6614416..6614463) /note="source:CACAO_PIF_E62_scaffold_2 16575 16623" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 6614538..6614585 /note="source:CACAO_PIF_E62_scaffold_2 16575 16623" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6614697..6615034) /note="source:CACAO_PIF_E62_scaffold_2 16126 16467" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6615030..6615109) /note="source:CACAO_PIF_E62_scaffold_2 13863 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6615255..6620473) /note="source:CACAO_PIF_E62_scaffold_2 7093 12308" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 6630718..6631367 /note="source:CACAO_M_E85507_F96_scaffold_11 1880 2529" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6634776..6634847 /note="source:scaffold_5_CACTA_0611 10584 10655" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6634838..6640033 /note="source:scaffold_5_CACTA_0611 5624 15298" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6642754..6643906) /note="source:CACAO_M_E57889_F328_scaffold_9 2007 3161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6643902..6644645) /note="source:scaffold_8_CACTA_0865 2223 2970" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6644646..6647569) /note="source:CACAO_M_E85098_F86_scaffold_10 1 2924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6647570..6647744 /note="source:INTACT470_F80_scaffold_3-int 2933 3100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6647739..6647983) /note="source:CACAO_M_E34971_F328_scaffold_5 2024 2276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6647984..6651167) /note="source:CACAO_M_E34971_F328_scaffold_5 1 3177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6651168..6654144) /note="source:CACAO_M_E57097_F245_scaffold_8 8821 11804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6654245..6656686) /note="source:INTACT774_F328_scaffold_5-int 3724 6200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6656787..6660450 /note="source:CACAO_M_E45364_F328_scaffold_6 6653 10312" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6662512..6664049) /locus_tag="TCM_043485" /note="dbxref CacaoGD:Thecc1EG043485" mRNA complement(join(6662512..6663515,6663648..6664049)) /locus_tag="TCM_043485" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043507t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.57 coverage" CDS complement(join(6663501..6663515,6663648..6663893)) /locus_tag="TCM_043485" /note="paralog of Thecc1EG043507t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18959.1" /translation="MSSGWVLGPGTLRHLLSQQGGVWQGNDPNDTRVGNSVMDVNTFL NFFESLFVSAFMSFSLTVAILQLVTGSSVIAILAEVLMQMVL" mobile_element complement(6664577..6664716) /note="source:scaffold_2_CACTA_0252 2338 2480" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6667083..6676530 /note="source:CACAO_M_S_E122136_F76_scaffold_10 6471 15894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6677798..6679037 /note="source:INTACT99F_F96_scaffold_2-int 717 1956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6679454..6680036 /note="source:INTACT99F_F96_scaffold_2-int 2374 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6680137..6681912 /note="source:CACAO_M_E45504_F98_scaffold_6 3012 4788" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 6680595..6681560 /locus_tag="TCM_043384" /note="paralog of Thecc1EG035772t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY18885.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLE9" /translation="MEKICKALGCSSVRSVELAAFQLEDVAQEWYSSLCRGRPTNATP LSWSEFSVAFLDRFLPLSVRNARAREFETLVQTSSMTVSEYDIKFTQLARYAPYLVST EEMKIQRFVDGLVEPLFRAVASRDFTTYSAAVDRAQRIEMRTSESRATRDRAKRGKTE GYQGRRDFSSGGSSSSRQGPQRDSRLPQQGSDAPGANIRVGQRTFSSRRQQDSRQSSQ VIRSCDTCGRRHSGRCFLATKTCYGCGQPGHIRRDCPMAHQSQDSARGSTQPASSAPS VAVSFGREVGGSRGRGAGTSSQGRPSGSGHQSSIGRGQARVFALT" mobile_element 6683593..6684142 /note="source:CACAO_M_E45504_F98_scaffold_6 6468 7017" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6687393..6687785 /note="source:INTACT99F_F96_scaffold_2-int 9703 10095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6687786..6688011) /note="source:CACAO_M_E11579_F85_scaffold_2 1 226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6688012..6688912 /note="source:INTACT726_F314_scaffold_5-int 2306 3426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6688351..6692326) /note="source:INTACT19_F111_scaffold_6-int 9982 13934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6692310..6692325 /note="source:CACAO_on_SS_E90_scaffold_6 3566 3581" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6692326..6695612) /note="source:CACAO_M_S_E145360_F207_scaffold_10 1 3287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6695613..6695993) /note="source:INTACT59_F126_scaffold_9-int 9960 10337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6695994..6697895 /note="source:CACAO_M_E84804_F44_scaffold_10 1 1905" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6697896..6699359 /note="source:CACAO_M_E363_F42_scaffold_1 1 1463" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6699460..6700353 /note="source:CACAO_M_S_E51090_F42_scaffold_4 1499 2393" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 6700354..6710353 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(6710354..6711002) /note="source:CACAO_M_E4704_F345_scaffold_2 8031 8686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6711003..6713136 /note="source:CACAO_M_E11032_F42_scaffold_2 1 2133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6713239..6716270) /note="source:INTACT135_F42_scaffold_4-int 8056 11087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6716371..6718222) /note="source:CACAO_M_E56778_F42_scaffold_8 3414 4910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6722957..6723311) /note="source:CACAO_M_S_E6027_F12_scaffold_2 7136 7490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6723412..6726596 /note="source:CACAO_M_E22722_F42_scaffold_3 4582 7767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6726868..6729205) /note="source:CACAO_M_E85089_F42_scaffold_10 1 2338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6729206..6730140 /note="source:INTACT300_F7_scaffold_5-int 12592 12831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6730155..6733227 /note="source:INTACT257_F186_scaffold_6-int 6632 9666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6730156..6732793) /note="source:INTACT19_F111_scaffold_6-int 6978 9612" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6733171..6733208) /note="source:CACAO_M_S_E144426_F33_scaffold_10 9974 10079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6733209..6733332) /note="source:scaffold_4_CACTA_0500 8814 8934" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6733338..6735497) /note="source:CACAO_M_E22484_F328_scaffold_3 1 2027" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6735498..6739284 /note="source:CACAO_M_S_E16721_F36_scaffold_2 12885 16680" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(6739319..6742472) /locus_tag="TCM_043490" /note="dbxref CacaoGD:Thecc1EG043490" mRNA complement(join(6739319..6740990,6741083..6741700, 6741865..6742472)) /locus_tag="TCM_043490" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043507t1" /inference="similar to AA sequence:Phytozome:Glyma12g27040.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc990t3" CDS complement(join(6740262..6740990,6741083..6741700, 6741865..6741990)) /locus_tag="TCM_043490" /note="paralog of Thecc1EG043507t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18960.1" /db_xref="Phytozome:Glyma12g27040.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MIISHNFFKRKQLNYRTARSRGQKIKIYQATSEKEQNLSMCAES LSVNPMAMERLRRAAEAGDIDELYNSIGEDADVLRLYDDAEFADTPLHVAAERGHADF AIAIMYLKPSFARKLNQGVFSPIHLALQQGHTSTVLRLLDVDKDLVRVKGKQGYTAFH YVVENENLELLAQFLKDCPACIEDVTIQKKTALHIAAENHRFEALEILVRWLERTHLY GKVSRKHLLNAKDTDGNTVLHIAASHIQPEMIRLLLDCKVDTKAVNSENLTALNVLKR QRDGVIEDKEICLKILRDTDGSAGLSALFNLKAKAEPVHEKFRSRIIFPEKVAIRALG PIMNMSVESMNALLVALALIMTAIYESLLSPPGGVWQGNDPNDTRVGNSVMDVNTFSN FFWSLFVLAIFTLSLTIAILQLATGSSAIAILAEVLAVLVTRSFYYAWWTIRPAHDIY VYSKDPDEAVLAIVLITLASMEASRWFFIISKRLYLNHRM" mobile_element complement(6747334..6747643) /note="source:CACAO_M_S_E145354_F33_scaffold_10 1736 2045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6748553..6750287) /note="source:CACAO_M_S_E145354_F33_scaffold_10 1 1735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6750858..6750962) /note="source:INTACT1432F_F101_scaffold_9-int 11642 11746" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(6753360..6755808) /locus_tag="TCM_043491" /note="dbxref CacaoGD:Thecc1EG043491" mRNA complement(join(6753360..6754209,6754302..6754846, 6755657..6755808)) /locus_tag="TCM_043491" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043490t1" /inference="similar to AA sequence:Phytozome:Glyma12g27040.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS complement(join(6753574..6754209,6754302..6754846, 6755657..6755717)) /locus_tag="TCM_043491" /note="paralog of Thecc1EG043490t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18961.1" /db_xref="Phytozome:Glyma12g27040.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MAMERLRSAAEAGDTDELHNRGSAPGEDAGVLRRHDDVEFAHTP LHVAAARGHADFATAIMYLRLSFARKLNQGVFSPIHLALQQGHTSTVLRLLDVDKDLV RIKGKQGYTAFHYVVQNENLELLAQFLKDCPACIEDETIQKKTALHIAAEKHRFEALE ILVRWLERTHLHGEVSRKHLLNAKDTDGNTVLHIAASHIQPKMIRLLLDCKVDTKAIN SENLIVLNVLELQSNGLSAAGLIDDKEISLKILRDTEGSAGFSALFKPKAEPLHQKFR SRIKFPENAAIRALGPIMNMSVESMNAFLVALALIITAIYESLLSPPGGVWQGNDPNN TRVGNSAMDVNAFLNFFGTLLFLSVFTFSLTIAILQLATGSGIIAILAEVLTVLLTRF FYYAWRTIRPADDIYIQQGSR" mobile_element complement(6760260..6762430) /note="source:CACAO_M_E85086_F15_scaffold_10 404 2574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6762917..6763319) /note="source:CACAO_M_E85086_F15_scaffold_10 1 403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6763713..6763771 /note="source:CACAO_M_E14639_F82_scaffold_3 313 390" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6763772..6766702) /note="source:CACAO_M_S_E145352_F33_scaffold_10 1 2931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6766917..6767173) /note="source:INTACT373_F207_scaffold_8-int 9971 10226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6778657..6779760) /note="source:CACAO_M_E186113_F33_scaffold_32 1859 2961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6779751..6779878) /note="source:CACAO_M_E49857_F85_scaffold_7 3217 3346" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6780704..6798397) /locus_tag="TCM_043494" /note="dbxref CacaoGD:Thecc1EG043494" mRNA complement(join(6780704..6781042,6784624..6784778, 6786649..6786783,6787708..6788281,6792933..6793018, 6794845..6795077,6795162..6795821,6798215..6798397)) /locus_tag="TCM_043494" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040169t1" /inference="similar to AA sequence:Phytozome:Glyma04g32860.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.37 coverage" mobile_element complement(6783141..6783257) /note="source:CACAO_M_E44150_F74_scaffold_5 1512 1615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6783242..6785642 /note="source:CACAO_on_E565_scaffold_5 3823 6209" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6785861..6788971) /note="source:INTACT550_F73_scaffold_4-int 1110 4228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6790180..6790623) /note="source:INTACT74_F134_scaffold_5-int 1412 1856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6791447..6791557 /note="source:INTACT901F_F95_scaffold_6-int 11844 11931" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(6792956..6793018,6794845..6795077, 6795162..6795582)) /locus_tag="TCM_043494" /note="paralog of Thecc1EG040169t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18962.1" /db_xref="Phytozome:Glyma04g32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AGW4" /translation="MYVMTCIYRVGFYTDGQSERTIQTLEDMLRACVIDFIGSWDRHL PLVEFAYNNNFQSSIGMAPYEALYGRKCRTPLCWDEVGERKLVSVELIELTNDKIKVI RERLKVAQDRQKSYADKQRKDLEFEIDDKVFLKVSPWKGVIRFAKRGKLNLRYIGPFR IIERIGPVAYRLELPPELDRIHNVFHVSMLKKYVPDPSHILETPPIELHDDLKFEVQL EESLPEKAKKSYPTSNDRGA" mobile_element complement(6795543..6795954) /note="source:CACAO_M_E86338_F15_scaffold_15 10702 11113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6797350..6797926 /note="source:CACAO_M_E53088_F15_scaffold_8 1797 2373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6798208..6798730) /note="source:CACAO_M_E85187_F15_scaffold_10 1 448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6798651..6798742 /note="source:CACAO_M_E43672_F60_scaffold_5 6272 6364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6805932..6806556) /note="source:INTACT74_F134_scaffold_5-int 1 630" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6810825..6811367) /locus_tag="TCM_043496" /note="dbxref CacaoGD:Thecc1EG043496" mRNA complement(6810825..6811367) /locus_tag="TCM_043496" /product="Ankyrin repeat protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043490t1" /inference="similar to AA sequence:Phytozome:Glyma06g36110.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(6810882..6811235) /locus_tag="TCM_043496" /note="paralog of Thecc1EG043490t1" /codon_start=1 /product="Ankyrin repeat protein, putative" /protein_id="EOY18963.1" /db_xref="Phytozome:Glyma06g36110.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B1Q4U3" /translation="MDERLRTVAKEGDTNALHECIREDPNVLRHIDEVEFVDTPLHIA TTRGHAGFSTTIMYLKPSFFRKLNQKVYSPIHLGLQNEHTNAMLHLLAIDKDLVRLKG KEGYTTIHYRENYEE" gene complement(6811757..6819377) /locus_tag="TCM_043497" /note="dbxref CacaoGD:Thecc1EG043497" mRNA complement(join(6811757..6812186,6816093..6816351, 6816652..6816857,6816963..6817096,6817389..6818009, 6818393..6818500,6818883..6819377)) /locus_tag="TCM_043497" /product="Gag protease polyprotein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022972t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(join(6812088..6812186,6816093..6816351, 6816652..6816857,6816963..6817096,6817389..6817461)) /locus_tag="TCM_043497" /note="paralog of Thecc1EG022972t1" /codon_start=1 /product="Gag protease polyprotein, putative" /protein_id="EOY18964.1" /translation="MSAYRDIVAIVTDSRIVPSHDNSCALVAEQAKSPLHPPPSPPPI GILVMPPKVAQALAAFFIAMAGQAQEARQLGCVSFTGELDPTVAKDWINQVSKTLSDM RLEDDMKLMVAMRLLEKRARTWWNSVKSRTTTPLTWRIRAEIAKKRNLSGSSSQQPKR GKDSMASGSTTSAPITSSRPLVSQTQQRPPRFSRSEMTTSEKSSGGSDKCRHCGKYHV GLCRKLVKNGKKVFSSNSLGEEKILDSTRMMGESREVF" mobile_element 6812578..6812691 /note="source:CACAO_M_S_E88822_F170_scaffold_7 7960 8078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6813895..6814644) /note="source:CACAO_M_E12405_F15_scaffold_3 1 749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6814547..6814658 /note="source:CACAO_M_E45017_F15_scaffold_6 2198 2309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6815637..6815706) /note="source:CACAO_M_E41756_F85_scaffold_5 15753 15822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6819218..6820093 /note="source:INTACT584_F15_scaffold_3-int 1 877" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6819370..6835002) /locus_tag="TCM_043498" /note="dbxref CacaoGD:Thecc1EG043498" mRNA complement(join(6819370..6820452,6823570..6823809, 6823902..6824309,6826281..6826315,6826754..6826892, 6832479..6833027,6834737..6835002)) /locus_tag="TCM_043498" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043507t1" /inference="similar to AA sequence:Phytozome:Glyma12g27040.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(join(6820363..6820452,6823570..6823809, 6823902..6824309,6826281..6826315,6826754..6826769)) /locus_tag="TCM_043498" /note="paralog of Thecc1EG043507t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18965.1" /db_xref="Phytozome:Glyma12g27040.1" /db_xref="TAIR:AT4G10720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MDRKKVHGNPHHCSDREGLTKLNQGVFSPIHLALQQGHTSTVLH LLDVDKDLVRVKGKQGYTAFHYVVENENLELLAQFLKDCPACIEDVTIQKKTALHITI EKHRFEALEILVRWLEKTHLYGKVSRKHLLNAKDTDGNTVLHIAASHIQPKMIKLLLD YKVDTKVINSENLTALKVFVRQRDAEIENKEISLKILRDTEGSAGLSALFKPKPKAKP VHEKFRSRITFLEKANKINSSSLYSIEHPAKSGYCENLTISCPI" mobile_element complement(6822231..6822397) /note="source:INTACT407F_F356_scaffold_4-int 5146 5318" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6822398..6822410) /note="source:CACAO_M_S_E84244_F33_scaffold_6 3289 3344" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6824301..6824728 /note="source:CACAO_M_E44150_F74_scaffold_5 1512 1939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6827254..6827625 /note="source:CACAO_M_E69460_F12_scaffold_9 4641 5023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6830537..6835070) /note="source:CACAO_M_S_E82995_F85_scaffold_6 2517 7116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6831271..6837383 /note="source:INTACT759_F323_scaffold_6-int 1553 8394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6837384..6837530) /note="source:CACAO_M_E49857_F85_scaffold_7 4051 4197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6838855..6840264) /note="source:INTACT669_F295_scaffold_3-int 8025 9447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6842664..6843510) /note="source:INTACT759_F323_scaffold_6-int 5413 6261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6843611..6844058 /note="source:CACAO_M_E49195_F17_scaffold_6 8703 9145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6844159..6844536) /note="source:CACAO_M_S_E87920_F323_scaffold_7 6294 6671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6844637..6845145 /note="source:CACAO_M_E3859_F82_scaffold_1 3437 3945" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6845246..6847255) /note="source:INTACT759_F323_scaffold_6-int 2743 4754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6847356..6848138 /note="source:CACAO_M_E49195_F17_scaffold_6 6703 7484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6848242..6848441) /note="source:INTACT759_F323_scaffold_6-int 3903 4102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6849221..6849835 /note="source:CACAO_M_E53587_F207_scaffold_8 10837 11453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6849835..6850557 /note="source:CACAO_M_S_E38262_F319_scaffold_4 3023 3766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6853807..6854422) /note="source:CACAO_M_E49759_F82_scaffold_7 6024 6628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6854411..6855293 /note="source:CACAO_M_E49655_F82_scaffold_7 4144 5025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6859877..6861371 /note="source:CACAO_M_E35811_F12_scaffold_5 16245 17349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6861372..6864220) /note="source:CACAO_M_E59482_F82_scaffold_9 470 3323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6864608..6865405) /note="source:CACAO_M_E41757_F82_scaffold_5 5913 6711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6865371..6865574 /note="source:CACAO_M_S_E4911_F76_scaffold_1 2969 3143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6865844..6866299 /note="source:CACAO_M_S_E4911_F76_scaffold_1 3414 3869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6866867..6868081 /note="source:CACAO_M_E33422_F33_scaffold_4 546 1761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6869919..6870581) /note="source:CACAO_M_E44599_F33_scaffold_6 4811 5473" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6877020..6877583 /note="source:CACAO_M_E294_F134_scaffold_1 9523 10086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6883744..6884235) /note="source:CACAO_M_E69760_F9_scaffold_9 6682 7172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6884216..6884554) /note="source:INTACT494_F82_scaffold_3-int 2950 3289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6887730..6888760 /note="source:CACAO_M_E42299_F33_scaffold_5 1 990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6888861..6891154 /note="source:CACAO_M_E42299_F33_scaffold_5 129 2424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6891255..6893163) /note="source:CACAO_M_E48381_F33_scaffold_6 1 1909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6893164..6893217 /note="source:INTACT1432F_F101_scaffold_9-int 6457 6510" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 6893318..6893819 /note="source:CACAO_M_E9901_F33_scaffold_2 2455 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6894209..6894225) /note="source:CACAO_M_E36294_F51_scaffold_5 6366 6381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6896191..6902059) /note="source:CACAO_M_E59221_F15_scaffold_9 2419 6634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6902162..6903876) /note="source:CACAO_M_E59744_F15_scaffold_9 7598 9349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6904822..6905197) /note="source:INTACT407F_F356_scaffold_4-int 4630 5004" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6905176..6905190 /note="source:CACAO_M_E22375_F15_scaffold_3 7881 7890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6905191..6906166) /note="source:CACAO_M_E58443_F15_scaffold_9 2129 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6907659..6908323) /note="source:CACAO_M_E12376_F15_scaffold_3 1 665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6908324..6908585) /note="source:CACAO_M_E49857_F85_scaffold_7 6343 6603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6908586..6908976) /note="source:CACAO_M_E44599_F33_scaffold_6 7193 7583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6918746..6918982) /note="source:CACAO_M_E12297_F14_scaffold_3 7979 8215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6920461..6920796) /note="source:CACAO_M_E44265_F33_scaffold_5 1 336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6920797..6921125 /note="source:INTACT135_F42_scaffold_4-int 605 940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6921022..6921173) /note="source:CACAO_M_E12297_F14_scaffold_3 19117 19275" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6924586..6926935) /note="source:CACAO_M_E12489_F323_scaffold_3 1 2341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6926936..6928334 /note="source:CACAO_M_E53388_F15_scaffold_8 4151 5553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6929036..6929160 /note="source:CACAO_M_E86052_F15_scaffold_12 6029 6153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6929159..6930516 /note="source:CACAO_M_S_E64023_F13_scaffold_5 18260 19647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6930596..6932245 /note="source:CACAO_M_S_E64023_F13_scaffold_5 17747 19386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6930887..6932686) /note="source:INTACT548_F247_scaffold_9-int 5045 6790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6934743..6934873) /note="source:INTACT189_F49_scaffold_5-int 1 119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6935805..6936577) /note="source:scaffold_1_CACTA_0009 13086 13842" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6936522..6936584) /note="source:CACAO_on_E193_scaffold_6 11841 11903" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6937016..6937165 /note="source:CACAO_M_E33977_F20_scaffold_4 14829 14995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6937785..6942623) /note="source:CACAO_Mutator_E1149_scaffold_5 9805 13494" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6948860..6951793) /note="source:CACAO_M_S_E145291_F72_scaffold_10 1 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6951929..6952794 /note="source:CACAO_Mutator_E1149_scaffold_5 6047 6932" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6953083..6953302) /note="source:CACAO_Mutator_E1149_scaffold_5 5891 6106" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6954287..6956830 /note="source:CACAO_M_S_E64023_F13_scaffold_5 3039 4679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6957608..6959783) /note="source:CACAO_Mutator_E1149_scaffold_5 6929 9050" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6958212..6960669) /note="source:scaffold_1_CACTA_0009 4858 7315" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6960516..6960724 /note="source:scaffold_1_CACTA_0009 12935 13141" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6960546..6960899) /note="source:CACAO_Mutator_E1149_scaffold_5 1 350" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6962072..6962186) /note="source:scaffold_1_CACTA_0009 1639 1753" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6962201..6964966) /note="source:INTACT465_F78_scaffold_6-int 4506 7272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6966295..6966344 /note="source:CACAO_Mutator_E1320_scaffold_6 1 50" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6966301..6966987) /note="source:CACAO_Mutator_E1320_scaffold_6 7829 8542" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6966725..6969486 /note="source:CACAO_PIF_E119_scaffold_3 7323 10077" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6969481..6969572) /note="source:scaffold_1_CACTA_0009 3238 3322" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6969570..6969731 /note="source:CACAO_PIF_E119_scaffold_3 9915 10076" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 6969746..6970189 /note="source:CACAO_M_E33977_F20_scaffold_4 15894 16351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6970248..6970370) /note="source:scaffold_1_CACTA_0009 1629 1753" /mobile_element_type="transposon:TIR/CACTA" gene complement(6971090..6975087) /locus_tag="TCM_043507" /note="dbxref CacaoGD:Thecc1EG043507" mRNA complement(join(6971090..6972186,6972279..6972895, 6974654..6974724,6974918..6975087)) /locus_tag="TCM_043507" /product="Ankyrin repeat-containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043490t1" /inference="similar to AA sequence:Phytozome:Glyma12g27040.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1527t6" CDS complement(join(6971458..6972186,6972279..6972875)) /locus_tag="TCM_043507" /note="paralog of Thecc1EG043490t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative" /protein_id="EOY18966.1" /db_xref="Phytozome:Glyma12g27040.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V397" /translation="MAMERLRRAAEAGDIDELYNSIGEDADVLRRYDDAEFADTPLHV AAERGHADFAIAIMYLKPSFARKLNQGGFSPIHLALQQGHTSTVFRLLDVDKDLVRVK GKQGYTAFHYVVENENLELLAQFLKDCPACIEDVTIQKKTALHIAAEKHRFEALEILV RWLERTHLYGKVSRKHLLNAKDTDGNTVLHLAASHIQPKMIRLLLDCMVDTKAVNSEN LTALNVLGRQRDGVIEDKEISLKILHDAEGSAGLSALFKPNPKAEPLHEKFRSRITFL EKAAIRALGPIMNMSVESMNAFLVALALIITATFESLLSPPGGVWQGNDPNGTRVSNS VMDVNTFLNFFGSLFCLAFMSFSLTIAILQLATGSSVIAILAEVLMVLLTRSLYYAWW TIRPAHDIYIYSKDPDIAGLVIALLIFSVLEASRWFFKIFKRLYLNHRM" mobile_element 6973165..6973282 /note="source:CACAO_Mutator_E1744_scaffold_8 1 118" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6976175..6976448 /note="source:scaffold_4_CACTA_0503 6779 7048" /mobile_element_type="transposon:TIR/CACTA" gene complement(6978912..6990437) /locus_tag="TCM_043508" /note="dbxref CacaoGD:Thecc1EG043508" mRNA complement(join(6978912..6979590,6980394..6980453, 6980953..6981052,6981246..6981313,6981483..6981578, 6986210..6986298,6986496..6986640,6986780..6986869, 6986975..6987046,6987202..6987282,6987704..6987835, 6988125..6988202,6988873..6989028,6989233..6989330, 6989759..6989855,6990108..6990437)) /locus_tag="TCM_043508" /product="Pyruvate kinase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23562" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022396t1" /inference="similar to AA sequence:frave:gene23562" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05010t00001" mRNA complement(join(6979047..6979590,6980394..6980455, 6980953..6981052,6981245..6981313,6981483..6981578, 6986210..6986298,6986496..6986640,6986780..6986869, 6986975..6987046,6987202..6987282,6987704..6987835, 6988125..6988202,6988873..6989028,6989233..6989330, 6989759..6989855,6990108..6990335)) /locus_tag="TCM_043508" /product="Pyruvate kinase isoform 2" /inference="alignment:exonerate-protein:2:frave:gene23562" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022396t1" /inference="similar to AA sequence:frave:gene23562" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3897t3; inference alignment:Newbler:10:TSA:cgbaB_g05010t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc132t6" CDS complement(join(6979438..6979590,6980394..6980453, 6980953..6981052,6981246..6981313,6981483..6981578, 6986210..6986298,6986496..6986640,6986780..6986869, 6986975..6987046,6987202..6987282,6987704..6987835, 6988125..6988202,6988873..6989028,6989233..6989330, 6989759..6989855,6990108..6990176)) /locus_tag="TCM_043508" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene23562; paralog of Thecc1EG022396t1" /codon_start=1 /product="Pyruvate kinase family protein isoform 1" /protein_id="EOY18967.1" /db_xref="TAIR:AT3G52990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KE3" /translation="MNSNHLLLEEPMRMASILEPSKPTFFPAMTKIVGTLGPKSRSVE IISGCLKAGMSVARFDFSWGDTEFHQETLENLKIAVKSTKKLCAIMLDTGGPELQVVN RTEHPISLEEDTKVVLTPDQDKQATSNLLPINFHGLSKAVKKGDTIFIGQYLFTGNET TSVWLEVDELSGEDVVCLIKNSATLSGPLYTLHVSQIRIDMPTLTDKDKEVISTWGVR NNIDFLSLSYTRHAEDVRHARDFLSKLGDLNQTQILAKIENIEGLTHFDEILQEADGI ILSRGNLGIDLPPEKVFLFQKAAVYKCNMVGKPAVVTRVVDSMTDNLRPTRAEATDVA NAVLDGSDAIILGAETLRGLYPVETVSTVGKICAEAEKVFNQDLYFKKTVKYVGEPMT HLESIASSAVRAAIKVKASAIICFTSSGRAARLIAKYRPTMPVISVVIPRLKTNQLRW TFSGAFEARQSLIVRGLFPMLADPRHPAESKNSTNESVLKVALDHGKASGVIKPHDRV VVCQKLGDASVVKILELED" CDS complement(join(6980954..6981052,6981245..6981313, 6981483..6981578,6986210..6986298,6986496..6986640, 6986780..6986869,6986975..6987046,6987202..6987282, 6987704..6987835,6988125..6988202,6988873..6989028, 6989233..6989330,6989759..6989855,6990108..6990176)) /locus_tag="TCM_043508" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene23562; paralog of Thecc1EG022396t1" /codon_start=1 /product="Pyruvate kinase isoform 2" /protein_id="EOY18968.1" /db_xref="TAIR:AT3G52990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KE3" /translation="MNSNHLLLEEPMRMASILEPSKPTFFPAMTKIVGTLGPKSRSVE IISGCLKAGMSVARFDFSWGDTEFHQETLENLKIAVKSTKKLCAIMLDTGGPELQVVN RTEHPISLEEDTKVVLTPDQDKQATSNLLPINFHGLSKAVKKGDTIFIGQYLFTGNET TSVWLEVDELSGEDVVCLIKNSATLSGPLYTLHVSQIRIDMPTLTDKDKEVISTWGVR NNIDFLSLSYTRHAEDVRHARDFLSKLGDLNQTQILAKIENIEGLTHFDEILQEADGI ILSRGNLGIDLPPEKVFLFQKAAVYKCNMVGKPAVVTRVVDSMTDNLRPTRAEATDVA NAVLDGSDAIILGAETLRGLYPVETVSTVGKICAEAEKVFNQDLYFKKTVKYVGEPMT HLESIASSAVRAAIKVKASAIICFTSSGRAARADCKVQANHACDFCCYPSAKDKSTAV DFLWCF" mobile_element 6981868..6982043 /note="source:INTACT51_F23_scaffold_9-int 1277 1452" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6983181..6985874 /note="source:INTACT51_F23_scaffold_9-int 3120 5812" /mobile_element_type="retrotransposon:LTR/Copia" gene 6998864..7012577 /locus_tag="TCM_043509" /note="dbxref CacaoGD:Thecc1EG043509" mRNA join(6998864..6999049,6999819..6999996,7000501..7000580, 7000684..7000808,7000960..7001075,7001321..7001530, 7002198..7002290,7002382..7002482,7002599..7002651, 7002768..7002953,7004937..7005592,7012356..7012577) /locus_tag="TCM_043509" /product="Auxin efflux carrier family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043510t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s46060.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3841t2" gene 6998934..7024882 /locus_tag="TCM_043510" /note="dbxref CacaoGD:Thecc1EG043510" mRNA join(6998934..6999049,6999819..6999849,7016117..7016263, 7016569..7016648,7016760..7016884,7016993..7017114, 7017339..7017557,7018613..7018705,7018806..7018906, 7018998..7019050,7019179..7019364,7024481..7024822) /locus_tag="TCM_043510" /product="Auxin efflux carrier family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29709.m001218.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043509t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026431001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00226t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00226t00001" mRNA join(6998934..6999049,6999819..6999849,7016117..7016263, 7016569..7016648,7016760..7016884,7016993..7017114, 7017339..7017557,7018806..7018906,7018998..7019050, 7019179..7019364,7024481..7024822) /locus_tag="TCM_043510" /product="Auxin efflux carrier family protein isoform 6" /inference="alignment:exonerate- protein:2:ricco:29709.m001218.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043509t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s46060.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00226t00003; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc139t29_C1; inference alignment:Newbler:10:TSA:cgbaP2_g00226t00001" CDS join(6999862..6999996,7000501..7000580,7000684..7000808, 7000960..7001075,7001321..7001530,7002198..7002290, 7002382..7002482,7002599..7002651,7002768..7002953, 7004937..7005061) /locus_tag="TCM_043509" /note="paralog of Thecc1EG043510t1" /codon_start=1 /product="Auxin efflux carrier family protein" /protein_id="EOY18969.1" /db_xref="Phytozome:POPTR_0001s46060.1" /db_xref="TAIR:AT1G76520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJY7" /translation="MGFLDLFVVAVMPVLKVLLVTGVGLFLATDGINLLGPEARNYLN KIVFYLFGPSLVVSNLAETVTLESLVTMWFMPVNIFLTFIIGSALGWILIKITKTPEH LRGMVIGCCSAGNLGNLLLIIVPAVCTESNTPFGDSCSTYAEAYASLSMAVGAIFIWS YAYPFVYAYASKSMEQNSSEGAPQSFPDSCTEALLPSRDCSNSEDYSGQGVLPLTNSD KRIKMSVVKKTVESIKIIMGKIDLKRVFAPSAIAAVVGFIIGTISPIRKVLIGDNAPL HVIDTSVSLIAEAAIPCMTLIMGANLLKGLKRSEVSMLVIIGIVAVRNIFLPLSGIGV VKAAHHFGMVGSDSLYRFVLMLQYAVPPAMSVGTMTQLFQSGQGESSMIMLWTYAVAS ISLTLWSMLFMWLLS" mRNA join(7015600..7016263,7016569..7016648,7016760..7016884, 7016993..7017114,7017339..7017557,7017759..7017820, 7017955..7017965,7018428..7018498,7018613..7018705, 7018806..7018906,7018998..7019054,7019159..7019418, 7024481..7024882) /locus_tag="TCM_043510" /product="Auxin efflux carrier family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29709.m001218.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043509t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026431001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00226t00001; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc139t29_C1" mRNA join(7016086..7016263,7016569..7016648,7016760..7016884, 7016993..7017114,7017339..7017557,7018613..7018705, 7018806..7018906,7018997..7019050,7019179..7019360, 7024481..7024839) /locus_tag="TCM_043510" /product="Auxin efflux carrier family protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:29709.m001218.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043509t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026431001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3841t6; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc139t29_C1; inference alignment:Newbler:10:TSA:cgbaP2_g00226t00001" CDS join(7016129..7016263,7016569..7016648,7016760..7016884, 7016993..7017114,7017339..7017557,7017759..7017820, 7017955..7017965,7018428..7018498,7018613..7018705, 7018806..7018906,7018998..7019054,7019159..7019418, 7024481..7024605) /locus_tag="TCM_043510" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043509t1" /codon_start=1 /product="Auxin efflux carrier family protein isoform 2" /protein_id="EOY18971.1" /db_xref="Phytozome:GSVIVT01026431001" /db_xref="TAIR:AT1G76520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJY7" /translation="MGFLDMFVVALMPVLKVLLVTAVGLLLAMEKIDLLGPEARNYLN KIVFYVLSPSLLVSNLADTITYNSVVTLWFMPLNILLTFIIGSALGLVLIKVTKTPEH LRGIVIGCCSAGNLGNLLLILVPAVCEQSNSPFGDSSTCSTNAVAYASLSMAVAAIYT WSYSYAVVSAYAIKSPEHKSTHSSEEAPDPSSDSCTEALLPSSYSQISEESSVQVELP LTNSGERTKVLVKPCFIAVYASFAESLISLVFMCLDLSASMRNPVFAFRKPFVNLHKM SFWKNIVQCVKSIMSKIDLKMVFAPSTIAAIIGFIFGIVSPIRKVLIDDSAPLHVIYT SAAFIGEAAIPCMTLIMGANLLKGCYKLVLAGLKRSEVNLLVIIGVVAVRNIFLPLLG IGVTKAAYHFGMAGSDSLYQFVLMLQYAVPPAFNVGMISLYHILYMHTYYQRQSVMTQ LFQRGQGETSIIMLWTYAVASISLTLWSTLFMSLVA" CDS join(7016129..7016263,7016569..7016648,7016760..7016884, 7016993..7017114,7017339..7017557,7018613..7018705, 7018806..7018906,7018998..7019050,7019179..7019364, 7024481..7024605) /locus_tag="TCM_043510" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043509t1" /codon_start=1 /product="Auxin efflux carrier family protein isoform 1" /protein_id="EOY18970.1" /db_xref="Phytozome:GSVIVT01026431001" /db_xref="TAIR:AT1G76520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJY7" /translation="MGFLDMFVVALMPVLKVLLVTAVGLLLAMEKIDLLGPEARNYLN KIVFYVLSPSLLVSNLADTITYNSVVTLWFMPLNILLTFIIGSALGLVLIKVTKTPEH LRGIVIGCCSAGNLGNLLLILVPAVCEQSNSPFGDSSTCSTNAVAYASLSMAVAAIYT WSYSYAVVSAYAIKSPEHKSTHSSEEAPDPSSDSCTEALLPSSYSQISEESSVQVELP LTNSGERTKMSFWKNIVQCVKSIMSKIDLKMVFAPSTIAAIIGFIFGIVSPIRKVLID DSAPLHVIYTSAAFIGEAAIPCMTLIMGANLLKGLKRSEVNLLVIIGVVAVRNIFLPL LGIGVTKAAYHFGMAGSDSLYQFVLMLQYAVPPAFNVGVMTQLFQRGQGETSIIMLWT YAVASISLTLWSTLFMSLVA" CDS join(7016129..7016263,7016569..7016648,7016760..7016884, 7016993..7017114,7017339..7017557,7018806..7018906, 7018998..7019050,7019179..7019364,7024481..7024605) /locus_tag="TCM_043510" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG043509t1" /codon_start=1 /product="Auxin efflux carrier family protein isoform 6" /protein_id="EOY18973.1" /db_xref="Phytozome:POPTR_0001s46060.1" /db_xref="TAIR:AT1G76520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJY7" /translation="MGFLDMFVVALMPVLKVLLVTAVGLLLAMEKIDLLGPEARNYLN KIVFYVLSPSLLVSNLADTITYNSVVTLWFMPLNILLTFIIGSALGLVLIKVTKTPEH LRGIVIGCCSAGNLGNLLLILVPAVCEQSNSPFGDSSTCSTNAVAYASLSMAVAAIYT WSYSYAVVSAYAIKSPEHKSTHSSEEAPDPSSDSCTEALLPSSYSQISEESSVQVELP LTNSGERTKIIGFIFGIVSPIRKVLIDDSAPLHVIYTSAAFIGEAAIPCMTLIMGANL LKGLKRSEVNLLVIIGVVAVRNIFLPLLGIGVTKAAYHFGMAGSDSLYQFVLMLQYAV PPAFNVGVMTQLFQRGQGETSIIMLWTYAVASISLTLWSTLFMSLVA" CDS join(7016129..7016263,7016569..7016648,7016760..7016884, 7016993..7017114,7017339..7017557,7018613..7018705, 7018806..7018906,7018997..7019050,7019179..7019272) /locus_tag="TCM_043510" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG043509t1" /codon_start=1 /product="Auxin efflux carrier family protein isoform 5" /protein_id="EOY18972.1" /db_xref="Phytozome:GSVIVT01026431001" /db_xref="TAIR:AT1G20925.1" /translation="MGFLDMFVVALMPVLKVLLVTAVGLLLAMEKIDLLGPEARNYLN KIVFYVLSPSLLVSNLADTITYNSVVTLWFMPLNILLTFIIGSALGLVLIKVTKTPEH LRGIVIGCCSAGNLGNLLLILVPAVCEQSNSPFGDSSTCSTNAVAYASLSMAVAAIYT WSYSYAVVSAYAIKSPEHKSTHSSEEAPDPSSDSCTEALLPSSYSQISEESSVQVELP LTNSGERTKMSFWKNIVQCVKSIMSKIDLKMVFAPSTIAAIIGFIFGIVSPIRKVLID DSAPLHVIYTSAAFIGGGSHSLYDLDNGGKPSQRSKKIRSESVSHYRGGSSAEHFLAS LGDWCY" mobile_element complement(7025051..7025100) /note="source:CACAO_M_E58819_F24_scaffold_9 15344 15392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7025359..7027001 /note="source:CACAO_M_E22186_F143_scaffold_3 4993 6636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7027102..7027567 /note="source:CACAO_M_E58894_F15_scaffold_9 10484 10945" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7038551..7038756) /note="source:INTACT261_F189_scaffold_2-int 215 402" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7042778..7042857 /note="source:INTACT19F_F94_scaffold_1-int 14122 14204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7042928..7043068 /note="source:INTACT19F_F94_scaffold_1-int 14260 14365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7044174..7044225) /note="source:INTACT261_F189_scaffold_2-int 11983 12037" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7044317..7048656 /note="source:CACAO_M_S_E32835_F9_scaffold_4 1 4334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7048633..7048769) /note="source:CACAO_M_S_E51162_F9_scaffold_4 9264 9409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7048770..7050230) /note="source:CACAO_M_E53201_F9_scaffold_8 1444 2903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7050708..7053541) /note="source:CACAO_M_E13363_F273_scaffold_3 428 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7054655..7063123) /note="source:scaffold_10_CACTA_0140 1 8469" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7063514..7065984 /note="source:CACAO_M_E44928_F73_scaffold_6 4759 7234" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7070399..7070468 /note="source:CACAO_on_E71_scaffold_9 2839 2909" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(7070911..7070988) /note="source:CACAO_on_E65_scaffold_9 97 169" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(7076135..7076223) /note="source:CACAO_M_S_E7994_F98_scaffold_2 2028 2095" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7077715..7080809 /locus_tag="TCM_043518" /note="dbxref CacaoGD:Thecc1EG043518" mRNA join(7077715..7077758,7077935..7078057,7078581..7078705, 7078782..7078903,7079137..7079340,7079551..7079631, 7079761..7079861,7079949..7080001,7080127..7080809) /locus_tag="TCM_043518" /product="Auxin efflux carrier family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043536t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s46060.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS join(7077951..7078057,7078581..7078705,7078782..7078903, 7079137..7079340,7079551..7079631,7079761..7079861, 7079949..7080001,7080127..7080329) /locus_tag="TCM_043518" /note="paralog of Thecc1EG043536t1" /codon_start=1 /product="Auxin efflux carrier family protein, putative" /protein_id="EOY18974.1" /db_xref="Phytozome:POPTR_0001s46060.1" /db_xref="TAIR:AT1G76520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJY7" /translation="MGFLNLFTVAVMPVLKVILVTGVGLFLALDRINLLGWFMPVNIF ITFIFGSALAWLLIKITRTPRHLQGVVIGCCSAGNRGNLLLIMIPAICEESNNPFGDS SVCSTHAEAYASLSMAVGAIFIWSYVYSVMRMYSAISPNSPRDTSGSQTFTEGCEGFL PIKDCDSSDDYTVQDELLLNTSGGGKIPILNRIKMIMGTIDLKKVFAPTAIAAVVGFI TGIVSPIRKLMIGESAPLHAIDTSAYLLGQAAIPCMTLILGANLLRGLKGSNASVSVV VGILAVRSMFLPLLGIGVVKVANRFGMVGSDTLYQFVLMLQYAVPPATAVGMTSL" mobile_element 7080750..7080872 /note="source:scaffold_5_CACTA_0585 6773 6893" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7080842..7081561) /note="source:CACAO_M_E84368_F4_scaffold_10 5344 6033" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7081564..7083460) /note="source:CACAO_M_E85028_F96_scaffold_10 528 2424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7083753..7084279) /note="source:CACAO_M_E85028_F96_scaffold_10 1 527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7084292..7084534) /note="source:CACAO_M_E84368_F4_scaffold_10 5105 5335" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7086973..7087741 /note="source:CACAO_M_S_E146236_F17_scaffold_12 7439 8199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7089521..7095175) /note="source:CACAO_M_E85026_F215_scaffold_10 1 5655" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7103570..7103691 /note="source:scaffold_5_CACTA_0585 6873 6989" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7103733..7105880 /note="source:scaffold_5_CACTA_0585 9511 11656" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7110406..7119615 /note="source:CACAO_M_S_E5670_F9_scaffold_2 1 12057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7119618..7122556) /note="source:CACAO_M_E69485_F323_scaffold_9 542 3467" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7122657..7123182) /note="source:CACAO_M_E50309_F82_scaffold_7 1 526" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7123850..7129765) /locus_tag="TCM_043522" /note="dbxref CacaoGD:Thecc1EG043522" mRNA complement(join(7123850..7124462,7129486..7129765)) /locus_tag="TCM_043522" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035867t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(7123879..7124439) /locus_tag="TCM_043522" /note="paralog of Thecc1EG035867t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18975.1" /translation="MWGRPSDAGLLGWKEFDKAFMDRFTLRNVRAAKAKEFEASKQTL GMTVFEYDAQFTQLSRYAPYLVSSEEIRVNWFMVGLLEYLFRVVASQRFDSYSDAVDC ARLIKGRSVEARALCESTERTKTEGQSSQRNTSQETTFARSSRPGRRDTIQNRGQVST GSQGSRRNPQFSSPPHCGNFSAANNC" mobile_element 7125257..7125352 /note="source:scaffold_5_CACTA_0585 6894 6989" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7125394..7127550 /note="source:scaffold_5_CACTA_0585 9511 11673" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7129357..7130989 /note="source:CACAO_M_E84368_F4_scaffold_10 4507 6149" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7135165..7138449 /note="source:INTACT570_F260_scaffold_5-int 8572 11867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7139330..7139573 /note="source:scaffold_3_CACTA_0385 795 1036" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7139565..7142299 /note="source:INTACT522_F240_scaffold_3-int 2599 5434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7144520..7147435 /note="source:CACAO_M_E24216_F279_scaffold_4 1 2887" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7147436..7147478 /note="source:CACAO_M_E12131_F243_scaffold_3 2847 2896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7147978..7148065) /note="source:INTACT19F_F94_scaffold_1-int 14296 14381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7148584..7150243) /note="source:CACAO_M_S_E121767_F226_scaffold_10 1 1660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7153063..7153154 /note="source:scaffold_6_CACTA_0702 12206 12282" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7154140..7154228) /note="source:INTACT19F_F94_scaffold_1-int 1 94" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7155811..7158632 /note="source:CACAO_M_E13363_F273_scaffold_3 427 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7159055..7159334) /note="source:INTACT19F_F94_scaffold_1-int 1272 1564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7160181..7160271) /note="source:scaffold_8_CACTA_0860 499 589" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7163452..7163765) /note="source:scaffold_6_CACTA_0699 11697 12008" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7164337..7164447 /note="source:CACAO_M_E44150_F74_scaffold_5 5577 5672" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7165029..7168149 /locus_tag="TCM_043525" /note="dbxref CacaoGD:Thecc1EG043525" mRNA join(7165029..7165053,7165132..7165282,7165399..7165478, 7165594..7165718,7165833..7165954,7166080..7166286, 7166446..7166538,7166642..7166742,7166838..7166890, 7166972..7167157,7167253..7168149) /locus_tag="TCM_043525" /product="Auxin efflux carrier family protein" /inference="alignment:exonerate- protein:2:ricco:29682.m000577.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043536t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026431001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3462t2" CDS join(7165148..7165282,7165399..7165478,7165594..7165718, 7165833..7165954,7166080..7166286,7166446..7166538, 7166642..7166742,7166838..7166890,7166972..7167157, 7167253..7167377) /locus_tag="TCM_043525" /note="paralog of Thecc1EG043536t1" /codon_start=1 /product="Auxin efflux carrier family protein" /protein_id="EOY18976.1" /db_xref="Phytozome:GSVIVT01026431001" /db_xref="TAIR:AT1G20925.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJY7" /translation="MGFLNLLIVAVMPVLKIILITAIGLLLALDRLKLLGPEANHHMN NIVFYVFSPALAASSLAETVTFKSLTTLWFMPVNLLLTFVLGSALAWLLIKITRTPKH LQGIVIGCCSAGNLGNLPLIMVPAVCEEPSNPFGDPSVCSTNAKPYASLSLSIGAIFI WSYVYGIMRMYANKSNESSTTGINSPIDTSETVPGGCTQAVLPSSNCNTSYLPRTISG ERSTKMSGLKKIMPRVKMISGKIDLKKVFAPTAVAAIVGFIIGAVSPIRKLMIGKSAP LRVIDSSAYILGEATIPCMTLIMGANLLIGLKGSDVSRTVIIGIIAVRNIFLPLSGIG VVKAAHHFGLVGSDSLYQFVLMLQYAVPPAMAIGTMTQFFQLGQGETSMIMLWTYVIA AVTLTLWSTLFMWLLA" mobile_element 7168859..7169359 /note="source:CACAO_M_E84368_F4_scaffold_10 5639 6138" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7173385..7175119 /note="source:INTACT190_F166_scaffold_7-int 3757 5492" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7174328..7175257 /note="source:CACAO_M_E11268_F87_scaffold_2 818 1746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7175358..7176412) /note="source:CACAO_M_E69025_F87_scaffold_9 1 1054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7176749..7179703) /note="source:CACAO_M_S_E99196_F72_scaffold_9 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7180882..7183120 /locus_tag="TCM_043527" /note="dbxref CacaoGD:Thecc1EG043527" mRNA join(7180882..7181154,7182902..7183120) /locus_tag="TCM_043527" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(7180962..7181154,7182902..7182981) /locus_tag="TCM_043527" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18977.1" /translation="MLVLISFSFLSLHILINIYGGGSLLLLVAFSKWFMLVNLLITFV LGSALAWLFIKMTKTPKHLQAEQLGIKCYEMPLPIYDGPYTSMITR" mobile_element complement(7182470..7182581) /note="source:CACAO_M_S_E121767_F226_scaffold_10 1552 1663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7182483..7182596 /note="source:CACAO_M_E69760_F9_scaffold_9 15 128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7183879..7185298 /note="source:CACAO_M_S_E16721_F36_scaffold_2 17787 19184" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7185299..7185458 /note="source:INTACT726_F314_scaffold_5-int 1 1577" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7186092..7186481) /note="source:CACAO_M_E57346_F74_scaffold_9 1428 1796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7189684..7190213) /note="source:CACAO_M_S_E4863_F51_scaffold_1 4777 5303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7190958..7191263 /note="source:CACAO_M_E57097_F245_scaffold_8 9277 9582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7191228..7191314) /note="source:CACAO_M_E3336_F73_scaffold_1 4298 4383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7194278..7194406 /note="source:INTACT405F_F91_scaffold_4-int 7316 7442" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7196739..7197283 /note="source:scaffold_6_CACTA_0702 3112 3692" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7205632..7206643 /note="source:INTACT42_F19_scaffold_5-int 1 1044" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7206638..7208891 /note="source:INTACT42_F19_scaffold_5-int 921 3179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7208891..7211306 /note="source:INTACT38_F18_scaffold_9-int 2988 5395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7211308..7211655) /note="source:INTACT43_F19_scaffold_6-int 383 727" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7211656..7213782) /note="source:INTACT42_F19_scaffold_5-int 1024 3208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7213777..7214132 /note="source:INTACT42_F19_scaffold_5-int 823 1178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7214134..7214270 /note="source:INTACT41_F19_scaffold_5-int 400 536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7215582..7218578) /note="source:CACAO_M_E85009_F7_scaffold_10 1 2997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7218458..7218599 /note="source:CACAO_M_S_E1495_F60_scaffold_1 7725 7861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7228966..7229747 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5126 5898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7229807..7230802 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5773 6718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7230799..7231241 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6643 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7230879..7231598) /note="source:CACAO_M_E58601_F7_scaffold_9 8819 9546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7231595..7231907) /note="source:CACAO_M_S_E15173_F4_scaffold_2 8824 9120" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7232241..7232345) /note="source:CACAO_M_S_E15173_F4_scaffold_2 5758 5862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7232374..7235093) /note="source:CACAO_M_S_E145264_F73_scaffold_10 1 2720" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7233167..7244101 /locus_tag="TCM_043533" /note="dbxref CacaoGD:Thecc1EG043533" mRNA join(7233167..7233182,7236073..7236176,7236293..7236372, 7236488..7236612,7236708..7236826,7236990..7237196, 7237356..7237467,7237552..7237651,7237720..7237766, 7237848..7238004,7238071..7238315,7241009..7241141, 7243716..7244101) /locus_tag="TCM_043533" /product="Auxin efflux carrier family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29682.m000577.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043536t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026431001" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7651t5" mobile_element complement(7235106..7235813) /note="source:CACAO_M_S_E15173_F4_scaffold_2 5020 5720" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(7236075..7236176,7236293..7236372,7236488..7236612, 7236708..7236826,7236990..7237196,7237356..7237467, 7237552..7237651,7237720..7237766,7237848..7238004, 7238071..7238254) /locus_tag="TCM_043533" /note="paralog of Thecc1EG043536t1" /codon_start=1 /product="Auxin efflux carrier family protein, putative" /protein_id="EOY18978.1" /db_xref="Phytozome:GSVIVT01026431001" /db_xref="TAIR:AT1G20925.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJY7" /translation="MPVLKIILIIAIGLLLALDRVKLLGPEAKRHLNKIVFYVFTPAL AASSLAETMTFKSFTTLWFMPVNILITFVLGSALAWLLIKITRTPKHLQGIFIGCSSA DLASLPLIMVPAVCEEPSNPFGDQSVCSTNAKPYASLSLSIGAIFMWSYVYGIMRMYA NKSIESSTTVINSPRDTSETVSGSRTQAALPSSGCNTSHLPRTLSGERSTKMSGLKKI MPRIKMISGKIDLKKVFAPTAVAAVMPKCLHCWVYNRAVSTIRKLMIGNSAPLRVIDS SAYILGKIINMMISGEANLLTGLKGSDVSRNVIIGIIAVRNIFLPLSGIGVVKAAHHF GLVGSDSLYQFVLMLQILVSLLNKLISTDLIQLLAGTMAQLFQLGQGETSMIMLWTSV TAAVTLTLWSTFFMWLLA" mobile_element complement(7238620..7239164) /note="source:INTACT42_F19_scaffold_5-int 2677 3220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7241145..7241933 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5121 5903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7242011..7243360 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5774 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7242983..7243714) /note="source:CACAO_M_E58601_F7_scaffold_9 8820 9547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7244605..7244991) /note="source:INTACT300_F7_scaffold_5-int 3159 3544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7245523..7249158 /note="source:INTACT789_F335_scaffold_1-int 1268 4661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7249159..7252129) /note="source:CACAO_M_E85004_F325_scaffold_10 1 2971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7252130..7254056 /note="source:INTACT789_F335_scaffold_1-int 4712 6637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7254057..7256778) /note="source:CACAO_M_E85003_F144_scaffold_10 1 2722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7256779..7259756 /note="source:INTACT789_F335_scaffold_1-int 6633 9700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7257181..7259757) /note="source:CACAO_M_E43348_F5_scaffold_5 18072 20657" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7261052..7261127 /note="source:INTACT424_F211_scaffold_12-int 1 77" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7263609..7263813) /note="source:INTACT261_F189_scaffold_2-int 12364 12589" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7267519..7269408) /note="source:INTACT570_F260_scaffold_5-int 1703 3289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7269815..7272523) /note="source:INTACT570_F260_scaffold_5-int 7004 9685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7272518..7273637) /note="source:INTACT570_F260_scaffold_5-int 3832 4968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7272789..7274403 /note="source:scaffold_2_CACTA_0259 3917 5503" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7274308..7275719) /note="source:INTACT570_F260_scaffold_5-int 10477 11881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7275714..7276092) /note="source:INTACT570_F260_scaffold_5-int 8574 8933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7282909..7285047) /note="source:CACAO_M_E50108_F4_scaffold_7 1449 3586" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7285051..7292908) /note="source:CACAO_M_E84995_F60_scaffold_10 4085 11942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7293009..7297102) /note="source:CACAO_M_E84995_F60_scaffold_10 1 4084" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7297157..7304793 /locus_tag="TCM_043536" /note="dbxref CacaoGD:Thecc1EG043536" mRNA join(7297157..7297187,7299688..7300108,7302210..7302360, 7302476..7302555,7302671..7302795,7302910..7303031, 7303158..7303364,7303524..7303616,7303720..7303820, 7303916..7303968,7304050..7304235,7304332..7304793) /locus_tag="TCM_043536" /product="Auxin efflux carrier family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026431001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043548t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026431001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3478t2" CDS join(7300011..7300108,7302210..7302360,7302476..7302555, 7302671..7302795,7302910..7303031,7303158..7303364, 7303524..7303616,7303720..7303820,7303916..7303968, 7304050..7304235,7304332..7304456) /locus_tag="TCM_043536" /note="paralog of Thecc1EG043548t1" /codon_start=1 /product="Auxin efflux carrier family protein" /protein_id="EOY18979.1" /db_xref="Phytozome:GSVIVT01026431001" /db_xref="TAIR:AT1G20925.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJY7" /translation="MVCGLDYKIDLGMAMGILLQDTCGNPTWLYMVRETFLQMGFLNL FIVAVMPVLKIILITAIGLLLALDRVKLLGPEAKHHLNKIVFYVFSPALAASSLAETM TFKSFTTLWFMPVNILITFVLGSALAWLLIKFTRTPKHLQGIVIGCCSAGNLANLPLI MVPAVCEEPSNPFGDQSVCSTNAKPYASLSLSIGAIFMWSYVYGIMRMYANKSIESST TGINSPRDTSETVSGSRTQAALPSSDCNNSDLPRTISRQRSTKTSGLKKIIPCIKMIS RKIDLKKVFAPTAVAAIVGFIIGAVSPIRKLMIGSSAPLRVIDSSAYILGEASIPCMT LIMGANLLTGLKGSDVSRNVIIGIIAVRNIFLPLSGIGVVKAAHHFGLVGSDSLYQFV LMLQYAVPPAMSIGTMTQFFQLGQGETSMIMLWAYVTAAVTLTLWSTFFMWLLA" mobile_element complement(7300700..7300757) /note="source:CACAO_M_E85491_F369_scaffold_11 1278 1335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7302111..7302174) /note="source:INTACT93F_F345_scaffold_2-int 16866 16918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7302122..7302183 /note="source:CACAO_M_S_E87246_F369_scaffold_7 1378 1437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7307375..7308311) /note="source:scaffold_8_CACTA_0858 12771 13708" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7308313..7308583 /note="source:INTACT904F_F49_scaffold_6-int 8557 8825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7308609..7308731 /note="source:CACAO_M_E50108_F4_scaffold_7 13843 13960" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7310388..7312858 /note="source:CACAO_M_S_E118675_F7_scaffold_9 1 2487" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7312868..7313813) /note="source:INTACT33_F7_scaffold_5-int 15242 16189" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7316504..7319984 /locus_tag="TCM_043538" /note="dbxref CacaoGD:Thecc1EG043538" mRNA join(7316504..7316676,7318794..7318854,7319461..7319984) /locus_tag="TCM_043538" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(7316615..7316676,7318794..7318854,7319461..7319547) /locus_tag="TCM_043538" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18980.1" /translation="MPVNPFFILHFLYDVSIHLASEDSLSYLTCLRIIEAFILQMIAP SEHPNFQKFELNAPKSFPFLISYLK" mobile_element complement(7316836..7319419) /note="source:CACAO_M_S_E145246_F144_scaffold_10 1 2584" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7320614..7325852) /locus_tag="TCM_043539" /note="dbxref CacaoGD:Thecc1EG043539" mRNA complement(join(7320614..7320992,7321566..7321623, 7322078..7322273,7322909..7322983,7324735..7324887, 7325419..7325852)) /locus_tag="TCM_043539" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(7320838..7320992,7321566..7321623, 7322078..7322273,7322909..7322983,7324735..7324887, 7325419..7325765)) /locus_tag="TCM_043539" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18981.1" /translation="MTMVENDNNELIPLRTVTRRRVCTDYRKLIKATKMDHFSLSFID QMLDRLVGKEFYCFLVGHLGYNQIEISLEDQEKTTFTYPYVTFNFKRMSFGLFNALAI FQRCMMVIFSNMVDKTLTKTHMKELLAVIYAFDKFRSYLIGTKVIIYTDHFAIKYLIA KKDAKPRFQRSPIAPFGSLGKLESTKGSTKYRENDSCCSEKLSGLRGLPDLVFAVAIN LLELLIAARFILVAKRNFLFWLLESCCSEKLSVRHAILLIKRQPVTRSRCPCRFVYLV DWFLEKHVTFLVELEHNAYWAIKKLNFDLKTAVERRLLQLNEPDEFRLDAY" mobile_element 7321175..7321327 /note="source:INTACT93F_F345_scaffold_2-int 17664 17813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7321196..7321855) /note="source:CACAO_M_E33282_F13_scaffold_4 11865 12520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7327909..7330139 /note="source:CACAO_M_E65323_F12_scaffold_9 7727 9970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7329947..7330853 /note="source:scaffold_9_CACTA_0927 15141 16037" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7331968..7332789 /note="source:INTACT1625F_F66_scaffold_10-int 1 808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7332343..7333603) /note="source:INTACT711_F307_scaffold_9-int 285 1539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7333102..7339761 /note="source:INTACT1625F_F66_scaffold_10-int 998 7691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7339759..7341188 /note="source:INTACT1625F_F66_scaffold_10-int 8435 9881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7341189..7341986 /note="source:INTACT1625F_F66_scaffold_10-int 125 899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7341464..7342314) /note="source:INTACT711_F307_scaffold_9-int 694 1539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7342318..7344557 /note="source:CACAO_M_E33282_F13_scaffold_4 10259 12521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7344556..7345354 /note="source:INTACT1625F_F66_scaffold_10-int 1087 1863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7350167..7351896 /note="source:INTACT224_F176_scaffold_8-int 17369 19047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7351889..7352053) /note="source:CACAO_M_S_E99715_F4_scaffold_9 3346 3513" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7352052..7354936) /note="source:CACAO_M_E14113_F106_scaffold_3 7637 10512" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7354965..7357118) /note="source:CACAO_M_E50108_F4_scaffold_7 1205 3361" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7358619..7361570) /note="source:CACAO_M_E84979_F134_scaffold_10 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7362290..7363363 /note="source:INTACT118_F5_scaffold_9-int 9400 10459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7363352..7363850 /note="source:CACAO_M_S_E100312_F82_scaffold_9 3913 4411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7364189..7365915 /note="source:CACAO_M_S_E100312_F82_scaffold_9 4748 6474" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7367049..7368361) /note="source:CACAO_M_E22484_F328_scaffold_3 10210 11522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7368478..7370142 /note="source:CACAO_M_S_E100312_F82_scaffold_9 3913 5575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7373355..7373516) /note="source:INTACT646F_F95_scaffold_5-int 5700 5860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7374486..7375588) /note="source:CACAO_M_E49418_F82_scaffold_7 174 1277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7375572..7375629 /note="source:CACAO_M_E58397_F207_scaffold_9 3261 3318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7376163..7376179 /note="source:CACAO_M_E33228_F15_scaffold_4 7939 7955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7376180..7383900) /note="source:INTACT51F_F15_scaffold_1-int 3567 11259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7384001..7384789) /note="source:CACAO_M_S_E52673_F15_scaffold_5 2564 3354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7384795..7385635) /note="source:CACAO_M_E14524_F15_scaffold_3 1 858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7387393..7389441 /note="source:CACAO_M_E35811_F12_scaffold_5 14716 16758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7391217..7391975 /note="source:CACAO_M_E58894_F15_scaffold_9 1 759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7396462..7399335 /note="source:CACAO_M_S_E119191_F3_scaffold_9 6394 9266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7399338..7399829 /note="source:CACAO_M_E35811_F12_scaffold_5 16276 16768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7399830..7403132) /note="source:CACAO_M_E84966_F82_scaffold_10 1 3303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7403133..7404009 /note="source:CACAO_M_E35811_F12_scaffold_5 16764 17641" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7406516..7412907 /note="source:CACAO_PIF_E119_scaffold_3 6783 13161" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 7413254..7414135 /note="source:CACAO_PIF_E119_scaffold_3 13334 14264" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(7414135..7414180) /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2048" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7414280..7416378) /note="source:CACAO_Mutator_E592_scaffold_3 8827 11040" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7416383..7416685 /note="source:CACAO_PIF_E119_scaffold_3 7816 8118" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(7416691..7416867) /note="source:CACAO_Mutator_E1018_scaffold_5 467 644" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7416883..7416995 /note="source:CACAO_Mutator_E1018_scaffold_5 503 615" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7417050..7417390 /note="source:CACAO_PIF_E119_scaffold_3 12664 13004" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(7417210..7417433) /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2244" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7417455..7418617) /note="source:CACAO_Mutator_E592_scaffold_3 8381 9599" /mobile_element_type="transposon:TIR/Mutator" gene complement(7418383..7420218) /locus_tag="TCM_043546" /note="dbxref CacaoGD:Thecc1EG043546" mRNA complement(join(7418383..7419229,7420096..7420218)) /locus_tag="TCM_043546" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027516t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(7418436..7418765) /locus_tag="TCM_043546" /note="paralog of Thecc1EG027516t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18982.1" /translation="MQDLITVAHWGDTEVDAKPCGVSIDIRGNECLSGCRDVVMGLMG VPGRDMKYRLNEKTPMQKDSHNCGDWVVAALQSLIGSDHQTLKANAIEGIRTKFALKI FANSSSC" mobile_element complement(7421571..7425810) /note="source:CACAO_PIF_E62_scaffold_2 7093 11367" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 7425823..7428708 /locus_tag="TCM_043548" /note="dbxref CacaoGD:Thecc1EG043548" mRNA join(7425823..7426405,7426521..7426600,7426716..7426840, 7426936..7427057,7427242..7427448,7427608..7427700, 7427777..7427877,7427986..7428038,7428122..7428307, 7428404..7428708) /locus_tag="TCM_043548" /product="Auxin efflux carrier family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026431001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043536t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026431001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc531t2" CDS join(7426271..7426405,7426521..7426600,7426716..7426840, 7426936..7427057,7427242..7427448,7427608..7427700, 7427777..7427877,7427986..7428038,7428122..7428307, 7428404..7428528) /locus_tag="TCM_043548" /note="paralog of Thecc1EG043536t1" /codon_start=1 /product="Auxin efflux carrier family protein" /protein_id="EOY18983.1" /db_xref="Phytozome:GSVIVT01026431001" /db_xref="TAIR:AT1G20925.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJY7" /translation="MGFLNLFIVAVMPVLKIILITAIGLLLALDRMKLLGPEAKHHLN NIVFYVFSPALAASSLAETMTFKSFTTLWFMPVNILITFVLGSALAWLIIKITRTPKH LQGIVIGCCSAGNMGNLPLVMVPALCEEPRNPFGDPSVCSRNAKPYASLSLSIGVIFM WSYVYGIMRMYANKSIESSTTGVNSPRDTSETVSGSCTQAALPSSDCNTSHLPRTISS ESSTRMSGLMKIMMRIKMISGKIDLKKMFAPAAIAAIVGFIIGAASPIRKLMIGNSAP LRVIDGCAHILGEATIPCVTLIMGANLLIGLKGSDVSRNVIIGIIAVRNIFLPLSGIG VVKAAHHFGLVGSDSLYQFVLMLQYAVPPAMSIGTMTQFFQLGQGETSVIMLWTYAVA AVTLTLWSTFFMWLLT" mobile_element 7435638..7435673 /note="source:CACAO_M_S_E64023_F13_scaffold_5 24519 24554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7436638..7439628 /note="source:INTACT481_F226_scaffold_1-int 1 2988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7440314..7443460) /note="source:CACAO_M_S_E145211_F7_scaffold_10 1 3147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7443919..7444400) /note="source:scaffold_6_CACTA_0702 9786 10180" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7445113..7446139 /note="source:CACAO_M_S_E6055_F310_scaffold_2 8441 9467" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7446993..7453047 /locus_tag="TCM_043550" /note="dbxref CacaoGD:Thecc1EG043550" mRNA join(7446993..7447572,7452667..7453047) /locus_tag="TCM_043550" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene23566" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9656t5" CDS join(7447300..7447572,7452667..7452801) /locus_tag="TCM_043550" /note="dbxref frave:gene23566" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18984.1" /translation="MARNVEIEIKEENPKFPGNLFLIFTKLPFNRKRKAEVVIEKKGN DKPSADEKKSNKPDVVKLSEPRPAVPPPVKLEAEEPGMTSSRIILWQVYAIGGFFLLK WIWARWKERKEMGGKKESSDDEQSPADDDSRYV" mobile_element complement(7452284..7452363) /note="source:scaffold_1_CACTA_0011 7449 7528" /mobile_element_type="transposon:TIR/CACTA" gene 7453701..7455377 /locus_tag="TCM_043551" /note="dbxref CacaoGD:Thecc1EG043551" mRNA join(7453701..7454380,7454615..7454776,7454857..7455038, 7455130..7455377) /locus_tag="TCM_043551" /product="Aspartate/glutamate/uridylate kinase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:28077.m000081" /inference="similar to AA sequence:Phytozome:GSVIVT01034687001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc777t10" CDS join(7453863..7454380,7454615..7454776,7454857..7455038, 7455130..7455236) /locus_tag="TCM_043551" /codon_start=1 /product="Aspartate/glutamate/uridylate kinase family protein, putative" /protein_id="EOY18985.1" /db_xref="Phytozome:GSVIVT01034687001" /db_xref="TAIR:AT3G10030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUY3" /translation="MSCHENFSLIHPHAPPALPSKNSISLLRTPTTIKKPEPEYRKDS EEWSDTALACLLEAYTEKFNQLNRGRDWEEVAEALSERRAGGADEDRGEKQKTGKSVE QCKNKIDNLKKRYKVELQRISGGGGSSHWHWFKQMEAIMGNLGSCSSGRGLEGEDRSG LSNLGKQATKSYLVLLCCRRSPSPTAGHEPSNILRKEKSSFVWWHWGWHWESSLYSRH SSSSESFRDCRHSMSGALLKGANGDGVYDCHSDNGSVALDRISFREVVSSGFTSMDMM AITYCEENGIPVVVFNLLEPGNISRALCGERVGTSIDQQGRDESEL" gene complement(7456257..7472026) /locus_tag="TCM_043552" /note="dbxref CacaoGD:Thecc1EG043552" mRNA complement(join(7456257..7457572,7457721..7458000, 7459266..7459330,7459466..7459525,7460008..7460220, 7460581..7460665,7461719..7461888,7464098..7464211, 7464311..7464410,7465782..7465847,7466039..7466102, 7466197..7466270,7466433..7466722,7467457..7467506, 7469379..7469448,7470324..7470395,7471188..7471262, 7471580..7471648,7471727..7472026)) /locus_tag="TCM_043552" /product="Myotubularin-like phosphatases II superfamily" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g34510.1" /inference="similar to AA sequence:ricco:28077.m000082" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3581t1" CDS complement(join(7457051..7457572,7457721..7458000, 7459266..7459330,7459466..7459525,7460008..7460220, 7460581..7460665,7461719..7461888,7464098..7464211, 7464311..7464410,7465782..7465847,7466039..7466102, 7466197..7466270,7466433..7466722,7467457..7467506, 7469379..7469448,7470324..7470395,7471188..7471262, 7471580..7471648,7471727..7471837)) /locus_tag="TCM_043552" /note="dbxref ricco:28077.m000082" /codon_start=1 /product="Myotubularin-like phosphatases II superfamily" /protein_id="EOY18986.1" /db_xref="TAIR:AT3G10550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J3T8" /translation="MAAPRPRRSVSVRDPSDGCERLEGAGSWDALEWTQIEPVTRSVS HANLEFLLEAERVVEEGHGVVLVNTDEAGTLFVTNFRLLFLSEGTRNIVPLGTIPLAT IEKLNKMVVKIQSAPRQTDKSSSRRLLQIIGKDMRVIVFGFRPRTKQRRVIFDALSRC TKPARIWDLYAFTCGPSKFTNPNPKVRLLNEYFRLLGKGFHRASMNMIEDGSFTLSND LWRISDMNTNYTMCQSYPFALIIPKNISDEEVIQASTFRARCRIPVVSWCHPGTGAVL ARSSQPLVGLMMNMRSNTDEKLVAALCTQLVDGKGSRRKLYIADARPRKNALANGAMG GGSESSSNYFQSEIVFFGIDNIHAMRESFARLREYLDTHGAASSDGMSSFLRHGGWTW GGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALESASVLVHCSDGWDRTSQ LVSLANLMLDPYYRTFTGFQALVEKDWLAFGHPFSDRVGMPSISGTSFELTRQSSTGS FSSSPMRQSSGSFTPQASNSSHAQNNYSPIFLQWVDCVSQLLRMYPFAFEFSSTFLVE FLDCVLSCRFGNFLCNSEKERQQCGVYDACGCLWAYLADLRSSEGSSHAHCNLFYDPL KHNGALLPPAAALAPTLWPLFHLRWACPSESQAGELEAECRNMAIKFSELRKAKEAAE KKAKEYSVAMETLNVELRNEKQVSKSTVILANRASKESAAIKRAVQSLGCRVNFTSSG DCTVDVESNPTETPQNFMCSPSRRESDAMMGHDEKTDLSVSITVVADNNVSSSPFGQV CETLCPLRTRDGGCRWPDAGCAQLGSQFVGLKANFDAFDQLSIDDDYFQSE" mobile_element complement(7477120..7477167) /note="source:scaffold_3_CACTA_0384 13983 14031" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7478788..7478953) /note="source:CACAO_on_SS_E135_scaffold_10 8384 8552" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7478954..7479763 /note="source:CACAO_M_E12963_F15_scaffold_3 1 810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7488203..7489018) /note="source:CACAO_M_E12405_F15_scaffold_3 1 817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7489019..7489203) /note="source:CACAO_on_SS_E135_scaffold_10 8197 8388" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7490161..7491075) /note="source:CACAO_M_S_E38321_F15_scaffold_4 2101 3014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7499782..7501584 /note="source:INTACT584_F15_scaffold_3-int 9485 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7501353..7511047) /note="source:CACAO_on_SS_E135_scaffold_10 1 9695" /mobile_element_type="transposon:TIR/Mutator" gene complement(7501375..7505044) /locus_tag="TCM_043556" /note="dbxref CacaoGD:Thecc1EG043556" mRNA complement(join(7501375..7501712,7501945..7501960, 7502071..7502490,7505018..7505044)) /locus_tag="TCM_043556" /product="DNA/RNA polymerases superfamily protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036591t1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3548t1" CDS complement(join(7501577..7501712,7501945..7501960, 7502071..7502440)) /locus_tag="TCM_043556" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG036591t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein isoform 1" /protein_id="EOY18987.1" /translation="MVGRGRGRGRGNQPQQAELAKMRRMIDDLTRAMQALQLQELVEA RMENPKGDHNPFEIHNLEDDDEFENENPFHEDVPVNQAARVGLKGRLLYALDLNGGGI RIEVIDFHEKFHAEEYLDWEATTCTTRDEMGVVRLYNIKDARQYALSAEKKVSRYDAI KALYGTDWRNDLS" mRNA complement(join(7501685..7501712,7501945..7502503)) /locus_tag="TCM_043556" /product="DNA/RNA polymerases superfamily protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035549t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc362t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3548t1" CDS complement(7501976..7502440) /locus_tag="TCM_043556" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG035549t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein isoform 2" /protein_id="EOY18988.1" /translation="MVGRGRGRGRGNQPQQAELAKMRRMIDDLTRAMQALQLQELVEA RMENPKGDHNPFEIHNLEDDDEFENENPFHEDVPVNQAARVGLKGRLLYALDLNGGGI RIEVIDFHEKFHAEEYLDWEASLENYFEWKPMAENRKVLFVKLKLKGTALQW" gene 7506454..7553985 /locus_tag="TCM_043558" /note="dbxref CacaoGD:Thecc1EG043558" mRNA join(7506454..7506492,7507988..7508164,7508438..7508766, 7552838..7552921,7553757..7553985) /locus_tag="TCM_043558" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008597t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.17 coverage" CDS join(7506480..7506492,7507988..7508164,7508438..7508463) /locus_tag="TCM_043558" /note="paralog of Thecc1EG008597t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18989.1" /translation="MTQNVTGVPWVSLIRGARFPIIELTLIGEARRITPEVGFEYTSR WPPRETRTQPTPRNGCVVRGSGQFVDS" mobile_element 7510817..7511333 /note="source:scaffold_4_CACTA_0503 3237 3750" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7513191..7513788) /note="source:CACAO_M_E35429_F244_scaffold_5 1 595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7513266..7513791 /note="source:scaffold_4_CACTA_0503 606 1132" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7517538..7517568 /note="source:CACAO_on_S_E390_scaffold_9 5163 5184" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7517569..7518625) /note="source:INTACT215_F33_scaffold_4-int 9923 10979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7518726..7519793) /note="source:INTACT215_F33_scaffold_4-int 8806 9873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7519768..7520321) /note="source:CACAO_M_E53452_F33_scaffold_8 7963 8518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7524309..7524422 /note="source:INTACT189_F49_scaffold_5-int 17781 17906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7525156..7526672 /note="source:CACAO_M_S_E6619_F15_scaffold_2 4 1522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7526671..7526897 /note="source:CACAO_M_E85113_F12_scaffold_10 3364 3590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7527006..7529461 /note="source:CACAO_M_E69760_F9_scaffold_9 6959 9395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7529462..7529860 /note="source:scaffold_5_CACTA_0611 2305 5095" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7529850..7532354) /note="source:CACAO_M_E49511_F87_scaffold_7 1 2504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7532355..7533597) /note="source:CACAO_M_E58167_F15_scaffold_9 1 1243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7534311..7534492) /note="source:CACAO_on_SS_E135_scaffold_10 420 601" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7535378..7535609 /note="source:INTACT189_F49_scaffold_5-int 17860 18056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7536144..7536210) /note="source:CACAO_M_E12297_F14_scaffold_3 14943 15024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7536211..7536893 /note="source:CACAO_M_S_E17274_F15_scaffold_3 1 681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7536994..7537117 /note="source:INTACT132_F12_scaffold_9-int 9599 9722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7537114..7538120 /note="source:CACAO_M_E35674_F13_scaffold_5 10894 11900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7540842..7541165 /note="source:scaffold_5_CACTA_0610 10420 10743" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7541164..7541467) /note="source:INTACT585_F12_scaffold_8-int 4071 4374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7541568..7542032 /note="source:INTACT132_F12_scaffold_9-int 10062 10525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7542283..7542609) /note="source:INTACT585_F12_scaffold_8-int 2988 3313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7543485..7544050 /note="source:CACAO_M_E294_F134_scaffold_1 9518 10083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7544002..7544073) /note="source:CACAO_M_E59641_F12_scaffold_9 1700 1775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7549277..7549344 /note="source:CACAO_M_S_E89272_F5_scaffold_8 9605 9679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7549477..7549654 /note="source:CACAO_M_S_E89272_F5_scaffold_8 9597 9723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7549778..7549829 /note="source:CACAO_M_S_E89272_F5_scaffold_8 9900 9951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7557521..7557546) /note="source:CACAO_M_E4514_F134_scaffold_2 2941 2966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7557542..7560433 /note="source:CACAO_M_E84349_F172_scaffold_10 61 2961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7560961..7563649 /note="source:CACAO_M_S_E101405_F231_scaffold_9 1 2670" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7567552..7571758) /locus_tag="TCM_043560" /note="dbxref CacaoGD:Thecc1EG043560" mRNA complement(join(7567552..7568564,7568964..7570971, 7571559..7571634)) /locus_tag="TCM_043560" /product="Phosphatase 2C 66 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23574" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022418t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02700.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc191t5; alternateUTRof:Thecc1EG043560t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc191t2" mRNA complement(join(7567941..7568152,7568391..7568442, 7568535..7568775,7568966..7570971,7571559..7571758)) /locus_tag="TCM_043560" /product="Phosphatase 2C 66 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23574" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022418t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02700.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc191t2" mRNA complement(join(7568419..7568442,7568535..7570971, 7571559..7571729)) /locus_tag="TCM_043560" /product="Phosphatase 2C 66 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23574" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022418t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9416t1; alternateUTRof:Thecc1EG043560t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc191t2" CDS complement(7569148..7570953) /locus_tag="TCM_043560" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022418t1" /codon_start=1 /product="Phosphatase 2C 66 isoform 1" /protein_id="EOY18990.1" /db_xref="Phytozome:POPTR_0008s02700.1" /db_xref="TAIR:AT5G04550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ71" /translation="MVAESWFRSLWKIPRRHEGGSEKVEIGVLAFEVASLMSKLVQLW QCLSDKQVIRLREEITSSEGIKKLVSEDEDYIGRLICAEMIENITHVAKSVARLAKKC GDLGLKSFELVFAELVQIGADPYGWGFSSKKMDKKVKKMERFIAVNASLYQEMEMLAD LEQTLRRMKSGDMEPENLLEFQKKVMRKQHELKSLREISLWNRTYDYTIRLLARSIFT IFGRIKHVFGIEQNVDDGDSRVANSDFMYRSQSVSALMQSSVHPTENTSLTRFSSGPF GMFSTKSGPIPKPSKTNYFHSGPLGGSTTNSGSISGKNGNFNFHSGPLGRPTAKSGPI FAMDKISKKIWQTNKHPAAVSGKKSHLKSNRLTQVGPFKGCMIAADSGTIRNCYISSN GIHSGILNGAKDGNLNLPEGNAVQTSSPVFRSQCRLLDAPPETLGASALALHYANVII VIEKLAVSPHLIGHDARDDLYNMLPASVRAALRVRLKPYTKSLASSVYDTELAGEWTE AMSAILEWLAPLAHNMIRWQSERSFEQQNFLSRTNVLLVQTLYFANREKTEAAITEIL VGLNYVWRLGRELNAKALQECASSSIFDESLDLEK" CDS complement(7569148..7570953) /locus_tag="TCM_043560" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022418t1" /codon_start=1 /product="Phosphatase 2C 66 isoform 1" /protein_id="EOY18991.1" /db_xref="Phytozome:POPTR_0008s02700.1" /db_xref="TAIR:AT5G04550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ71" /translation="MVAESWFRSLWKIPRRHEGGSEKVEIGVLAFEVASLMSKLVQLW QCLSDKQVIRLREEITSSEGIKKLVSEDEDYIGRLICAEMIENITHVAKSVARLAKKC GDLGLKSFELVFAELVQIGADPYGWGFSSKKMDKKVKKMERFIAVNASLYQEMEMLAD LEQTLRRMKSGDMEPENLLEFQKKVMRKQHELKSLREISLWNRTYDYTIRLLARSIFT IFGRIKHVFGIEQNVDDGDSRVANSDFMYRSQSVSALMQSSVHPTENTSLTRFSSGPF GMFSTKSGPIPKPSKTNYFHSGPLGGSTTNSGSISGKNGNFNFHSGPLGRPTAKSGPI FAMDKISKKIWQTNKHPAAVSGKKSHLKSNRLTQVGPFKGCMIAADSGTIRNCYISSN GIHSGILNGAKDGNLNLPEGNAVQTSSPVFRSQCRLLDAPPETLGASALALHYANVII VIEKLAVSPHLIGHDARDDLYNMLPASVRAALRVRLKPYTKSLASSVYDTELAGEWTE AMSAILEWLAPLAHNMIRWQSERSFEQQNFLSRTNVLLVQTLYFANREKTEAAITEIL VGLNYVWRLGRELNAKALQECASSSIFDESLDLEK" CDS complement(7569148..7570953) /locus_tag="TCM_043560" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022418t1" /codon_start=1 /product="Phosphatase 2C 66 isoform 1" /protein_id="EOY18992.1" /db_xref="Phytozome:POPTR_0008s02700.1" /db_xref="TAIR:AT5G04550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ71" /translation="MVAESWFRSLWKIPRRHEGGSEKVEIGVLAFEVASLMSKLVQLW QCLSDKQVIRLREEITSSEGIKKLVSEDEDYIGRLICAEMIENITHVAKSVARLAKKC GDLGLKSFELVFAELVQIGADPYGWGFSSKKMDKKVKKMERFIAVNASLYQEMEMLAD LEQTLRRMKSGDMEPENLLEFQKKVMRKQHELKSLREISLWNRTYDYTIRLLARSIFT IFGRIKHVFGIEQNVDDGDSRVANSDFMYRSQSVSALMQSSVHPTENTSLTRFSSGPF GMFSTKSGPIPKPSKTNYFHSGPLGGSTTNSGSISGKNGNFNFHSGPLGRPTAKSGPI FAMDKISKKIWQTNKHPAAVSGKKSHLKSNRLTQVGPFKGCMIAADSGTIRNCYISSN GIHSGILNGAKDGNLNLPEGNAVQTSSPVFRSQCRLLDAPPETLGASALALHYANVII VIEKLAVSPHLIGHDARDDLYNMLPASVRAALRVRLKPYTKSLASSVYDTELAGEWTE AMSAILEWLAPLAHNMIRWQSERSFEQQNFLSRTNVLLVQTLYFANREKTEAAITEIL VGLNYVWRLGRELNAKALQECASSSIFDESLDLEK" mobile_element complement(7578738..7592117) /note="source:INTACT298_F14_scaffold_10-int 1 13371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7594236..7598311 /note="source:CACAO_M_E3884_F22_scaffold_1 1 4103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7598312..7610429) /note="source:INTACT631_F9_scaffold_10-int 1 12118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7610430..7615252 /note="source:CACAO_M_S_E66670_F14_scaffold_5 4169 8989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7615253..7618082) /note="source:CACAO_M_E2981_F15_scaffold_1 1 2842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7618083..7619226 /note="source:INTACT289_F14_scaffold_4-int 8973 10147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7620517..7623197 /note="source:INTACT296_F13_scaffold_9-int 11777 14445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7623059..7623226) /note="source:INTACT84_F12_scaffold_5-int 8686 8851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7626637..7628675 /note="source:INTACT298_F14_scaffold_10-int 3097 5137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7628776..7630032) /note="source:CACAO_M_S_E64023_F13_scaffold_5 16486 17768" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7631704..7633895) /locus_tag="TCM_043566" /note="dbxref CacaoGD:Thecc1EG043566" mRNA complement(join(7631704..7632194,7632764..7632833, 7633262..7633311,7633394..7633632,7633720..7633895)) /locus_tag="TCM_043566" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(7631898..7632194,7632764..7632833, 7633262..7633311,7633394..7633632,7633720..7633762)) /locus_tag="TCM_043566" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18993.1" /translation="MHLYAQMVKDTNLGKRFNKVCTPFIKVDGYHLKGPHGRAFLSAI VIDGNCGLFPVVVDVVELENGDPWSWFLNLVNTTIGDINKPLAMMSDAQKGLDDIIIE IMPHVIQRRVMPAFNSKFSVFQSGKTYAIRLKQNTLLRSSSIAVGFPLGAANGFSLRA VASKTSRRLASVQRKPVVATTLGIDRGACSGVKYVPARGGLKRAPFPELATSTPYYPC CLYCPYCLYLSNEF" gene 7633991..7638003 /locus_tag="TCM_043567" /note="dbxref CacaoGD:Thecc1EG043567" mRNA join(7633991..7634420,7634530..7634675,7637201..7637319, 7637424..7638003) /locus_tag="TCM_043567" /product="Ssu72-like family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037420001" /inference="similar to AA sequence:Phytozome:GSVIVT01037420001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13711t00001" mRNA join(7634096..7634420,7634530..7634675,7637201..7637311, 7637424..7637912) /locus_tag="TCM_043567" /product="Ssu72-like family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037420001" /inference="similar to AA sequence:Phytozome:GSVIVT01037420001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3597t1; inference alignment:Newbler:10:TSA:cgbaL_g13711t00001" CDS join(7634206..7634420,7634530..7634675,7637201..7637319, 7637424..7637525) /locus_tag="TCM_043567" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ssu72-like family protein isoform 1" /protein_id="EOY18994.1" /db_xref="Phytozome:GSVIVT01037420001" /db_xref="TAIR:AT1G73820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9S5E7" /translation="MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGP SLREPNVYEFGTPYKHMLDDLRRKDPELYKRNGILPMLKRNSSVKLAPQRWQDNAADG TFDIVFTFEEKVFDMVIEDLHNRDQVLLKSVLVINLEVKDNHEEAAIGARLALDLCEQ IEAAESWEESIDDILASFENKHRRKLLYSISFY" CDS join(7634206..7634420,7634530..7634675,7637201..7637311, 7637424..7637428) /locus_tag="TCM_043567" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ssu72-like family protein isoform 2" /protein_id="EOY18995.1" /db_xref="Phytozome:GSVIVT01037420001" /db_xref="TAIR:AT1G73820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2QX64" /translation="MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGP SLREPNVYEFGTPYKHMLDDLRRKDPELYKRNGILPMLKRNSSVKLAPQRWQDNAADG TFDIVFTFEEKVFDMVIEDLHNRDQVLLKSVLVINLEVKDNHEEAAIGARLALDLY" gene complement(7638341..7639472) /locus_tag="TCM_043568" /note="dbxref CacaoGD:Thecc1EG043568" mRNA complement(join(7638341..7638926,7639040..7639090, 7639177..7639472)) /locus_tag="TCM_043568" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS complement(join(7638580..7638926,7639040..7639090, 7639177..7639420)) /locus_tag="TCM_043568" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18996.1" /translation="MKPGLNLPKKLRVIYNDPDATDLSSDEEEIDYWKKRKNQIVGTK RVVKEISCSSASHKSCSSNSSHYINDGTGSRRPRRSSSTYSTEEEAAAVYQTKKQEAN NAEKTMTQRTMKKVVKEYRNVKEQPCLDQWDEWKDEPSIMELWEVPPSASESWEELFR PYGHEDYLPCGSDAVSCLLLPKNSKDKLFDQPDIKTKMEDMAWADEILNLEFC" mobile_element 7642141..7642248 /note="source:INTACT120_F22_scaffold_3-int 7038 7150" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7651422..7654663) /locus_tag="TCM_043569" /note="dbxref CacaoGD:Thecc1EG043569" mRNA complement(join(7651422..7652234,7652834..7653067, 7653251..7653381,7653465..7653651,7653766..7653863, 7653993..7654223,7654360..7654663)) /locus_tag="TCM_043569" /product="Transmembrane amino acid transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034731001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043595t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02690.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc391t3" CDS complement(join(7651854..7652234,7652834..7653067, 7653251..7653381,7653465..7653651,7653766..7653863, 7653993..7654223,7654360..7654474)) /locus_tag="TCM_043569" /note="paralog of Thecc1EG043595t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein" /protein_id="EOY18997.1" /db_xref="Phytozome:POPTR_0008s02690.1" /db_xref="TAIR:AT1G08230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SY27" /translation="MGTVAPNSNDLSSTDKENGVVQSPEELDAGALFVLKSRGSWLHC GYHLTTSIVGPVIFSFPFALALLGWVPGVLITALQGLVTFYSYNLLSLVLDHHAQLGK RQRRFRDMARDILGPRWGKYFVGPLQFAICYGAVIGCILLGGQSLKFIYLLYNPSGKM QLYQFIIIFGAVPLFLAQIPSFHSLRHINLASLLLCLAYSACVTAGSIHIGNSRNAPN KDYSIQGSEENRILGAINGISIIATTYGCGIIPEIQATIAPPVKGKMFKGLCICFAVI VSTYISVSISGYWAFGNQSQPTILSNFMGEKRPLLPTWFLLVTNIFTLMQLVTITVIY LQPTNELFEKWFANPKMDQFSARNVMPRLVFRSLSVIIASTLAAILPFFGDIMALFGA FGVIPLDFILPMVFYNLTFKPSKRGLVFWGNTLIAVASSALVAIGAVASVRQIVLDAK TYSLFANM" mobile_element complement(7659216..7659343) /note="source:CACAO_M_E23991_F4_scaffold_4 3249 3373" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7664535..7664631 /note="source:CACAO_M_S_E6117_F51_scaffold_2 1112 1190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7664630..7664694) /note="source:CACAO_M_E58230_F143_scaffold_9 1666 1728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7665679..7667366 /note="source:INTACT37_F117_scaffold_2-int 1 1737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7667064..7667451) /note="source:CACAO_M_E11662_F12_scaffold_2 6932 7303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7667792..7669613) /note="source:CACAO_M_E11662_F12_scaffold_2 4780 6614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7669601..7669829) /note="source:CACAO_M_S_E98847_F115_scaffold_8 5065 5304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7669814..7676664 /note="source:INTACT37_F117_scaffold_2-int 2512 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7672563..7680444 /locus_tag="TCM_043574" /note="dbxref CacaoGD:Thecc1EG043574" mRNA join(7672563..7673122,7673257..7673822,7673936..7674828, 7676282..7676795,7680135..7680444) /locus_tag="TCM_043574" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013070t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.26 coverage" CDS join(7673691..7673822,7673936..7674346) /locus_tag="TCM_043574" /note="paralog of Thecc1EG013070t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18998.1" /translation="MKRKRERKNRERVRVKRMVLLHFAKGKIEFLLQFWRKKKAENFE LEILEVLLPLKGSKVLPICAEKLKLFVANLCRKFRAVCAEKLELFAAKNWSCLCRKIG VVCCRKIRAVYAEKLELFAANLCKKIGQHCAANLREKKQLGATKFLRKRELKVLPPEE EENDPRKRGSHGGEERKTWW" mobile_element complement(7677231..7678135) /note="source:CACAO_M_E5886_F323_scaffold_2 2219 3132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7678524..7679898) /note="source:CACAO_M_E58722_F323_scaffold_9 771 2148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7685829..7686677) /note="source:CACAO_M_E52472_F323_scaffold_7 1234 2081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7686998..7687909) /note="source:CACAO_M_E12989_F82_scaffold_3 1 912" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7687754..7691492) /locus_tag="TCM_043576" /note="dbxref CacaoGD:Thecc1EG043576" mRNA complement(join(7687754..7688160,7690744..7691492)) /locus_tag="TCM_043576" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g025330.1.4" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(7688052..7688160,7690744..7691183)) /locus_tag="TCM_043576" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY18999.1" /translation="MRSINILGENPSVMGTDFRSAKASVSSIPLTIRTNLQRINNSSN ILQPIYTTQENSSTNSPNMSPTYSSMTNNPNLNTNDEQSSKIFVLEKEFEIDKEFCRK QFYSKKNKQKREKFFKNYEQEKNEILKEYYNFMNKYKILVEFFEWLVGHEGRFSSSVE ACTAPIKSSIILHISTNSACWG" mobile_element complement(7695971..7699417) /note="source:CACAO_M_E84927_F323_scaffold_10 1 3447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7702234..7703765 /note="source:CACAO_M_S_E32183_F51_scaffold_3 3 1540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7703197..7703765) /note="source:scaffold_9_CACTA_0934 4418 4972" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7703766..7707073) /note="source:CACAO_M_E84925_F82_scaffold_10 1 3308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7707074..7708630 /note="source:CACAO_M_S_E31651_F51_scaffold_3 2353 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7708782..7710804 /note="source:CACAO_M_E13363_F273_scaffold_3 940 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7711703..7712068) /note="source:CACAO_Again_on_E205_scaffold_9 8330 8690" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(7712063..7712312) /note="source:CACAO_Again_on_E205_scaffold_9 126 378" /mobile_element_type="transposon:TIR/hAT" mobile_element 7712600..7712956 /note="source:INTACT132_F12_scaffold_9-int 8903 9260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7713060..7713876 /note="source:INTACT132_F12_scaffold_9-int 9926 10741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7714505..7715122) /note="source:CACAO_M_E42514_F40_scaffold_5 10291 10906" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7715183..7715289 /note="source:CACAO_PIF_E119_scaffold_3 2581 2682" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(7715500..7716279) /note="source:INTACT193_F12_scaffold_1-int 7257 8016" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7716281..7716371 /note="source:INTACT537_F22_scaffold_2-int 9136 9224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7716354..7716415 /note="source:CACAO_M_E12463_F12_scaffold_3 4577 4638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7716526..7716587) /note="source:CACAO_M_E58877_F5_scaffold_9 6882 6946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7716548..7716621 /note="source:CACAO_M_E12463_F12_scaffold_3 4565 4638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7717930..7721048 /note="source:CACAO_PIF_E62_scaffold_2 7087 11665" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 7721049..7723405 /note="source:CACAO_Mutator_E592_scaffold_3 7208 9542" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7723406..7724954 /note="source:CACAO_PIF_E62_scaffold_2 11666 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 7724909..7725143 /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2251" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7724950..7725221 /note="source:CACAO_PIF_E62_scaffold_2 16126 16357" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 7725160..7730826 /note="source:CACAO_Mutator_E1018_scaffold_5 820 6616" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7733767..7733871) /note="source:INTACT296_F13_scaffold_9-int 13172 13250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7734035..7744294) /note="source:INTACT1793F_F14_scaffold_10-int 1 10260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7745016..7745100) /note="source:scaffold_6_CACTA_0699 4280 4368" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7745508..7745586) /note="source:INTACT1793F_F14_scaffold_10-int 1 86" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7745587..7751295 /note="source:INTACT1625F_F66_scaffold_10-int 1865 7589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7751297..7751826 /note="source:INTACT1373F_F385_scaffold_8-int 29 561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7751830..7752886 /note="source:CACAO_M_E12297_F14_scaffold_3 6346 7400" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7752327..7758951 /locus_tag="TCM_043584" /note="dbxref CacaoGD:Thecc1EG043584" mRNA join(7752327..7752596,7754973..7755552,7758863..7758951) /locus_tag="TCM_043584" /product="Gag protease polyprotein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003615t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage" mobile_element 7754555..7755594 /note="source:CACAO_M_E12297_F14_scaffold_3 8962 9998" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(7754979..7755552,7758863..7758912) /locus_tag="TCM_043584" /note="paralog of Thecc1EG003615t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY19000.1" /translation="MPPRRGHPPLTRSVGRGRGRSQRHQPDTVEEESAASTIRAAPAA EQADSHPHPPSPQPPTGIPAMPTEAAQALAAFFAAIAGQAQTGQVPPVVPPATPLVPP PIQDVSISKKLKEARQLGCVSFTCELDATVAKDWINQVSETLSDMGLDDDMKLMVATR LLEKRARTWWNSVKSRSATPQIWSDFLREFDGGESSDKGKEIASEDQ" mobile_element 7758192..7759356 /note="source:CACAO_M_E12297_F14_scaffold_3 7088 8252" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7759896..7760405 /note="source:CACAO_M_E44599_F33_scaffold_6 7074 7583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7760406..7761665) /note="source:CACAO_M_E12845_F210_scaffold_3 1 1257" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7762805..7765799 /locus_tag="TCM_043585" /note="dbxref CacaoGD:Thecc1EG043585" mRNA join(7762805..7762937,7764888..7765799) /locus_tag="TCM_043585" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.17 coverage" CDS join(7762820..7762937,7764888..7765120) /locus_tag="TCM_043585" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19001.1" /translation="MLLLMGQAMDERSLLGPSGLYPFGTMHWSYPITKWDVTICDIAL KVCNKSKNEDSGETPKSIKSKGDGIFTPKASTKSKQHTSRAAKSKQEPSKISSNSKGK SLKSGGNSNSNGSG" mobile_element 7762851..7762933 /note="source:CACAO_M_E3248_F5_scaffold_1 18759 18837" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7766990..7770672) /locus_tag="TCM_043586" /note="dbxref CacaoGD:Thecc1EG043586" mRNA complement(join(7766990..7767246,7769064..7769116, 7769434..7769480,7770079..7770280,7770453..7770672)) /locus_tag="TCM_043586" /product="10-formyltetrahydrofolate synthetase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045131t1" /inference="similar to AA sequence:frave:gene24724" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3621t1" CDS complement(join(7767068..7767246,7769064..7769116, 7769434..7769480,7770079..7770280,7770453..7770478)) /locus_tag="TCM_043586" /note="dbxref frave:gene24724; paralog of Thecc1EG045131t1" /codon_start=1 /product="10-formyltetrahydrofolate synthetase, putative" /protein_id="EOY19002.1" /db_xref="TAIR:AT1G50480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T077" /translation="MHHNHDITQLDPPKKFRPKKKKFSPSRSVRKLELLSPVPADIDI ANSVEPFHISEIAKDLNLSSNHYNLYGKYKAKVLLPALDELQGSEDGYFDIGILADGT IFAQRNICCYLSSATIARTNFWNERGAAGGGYCKVILMDEFNLQLTGDIHAITAANNL LAAAIEIW" mobile_element complement(7767267..7767998) /note="source:INTACT135F_F90_scaffold_2-int 13314 13998" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7772079..7772142 /note="source:INTACT514_F12_scaffold_6-int 7033 7099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7773189..7777798) /note="source:INTACT281_F191_scaffold_10-int 1 4610" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7780141..7783126) /note="source:CACAO_M_E84911_F7_scaffold_10 1 2986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7783822..7799615) /note="source:CACAO_M_E84908_F12_scaffold_10 1 15794" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7800530..7802246 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3038 4755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7807168..7808209) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3445 4455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7810569..7811796 /note="source:CACAO_M_S_E64832_F14_scaffold_5 3108 4309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7819964..7822951) /note="source:CACAO_M_E43710_F7_scaffold_5 1 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7824968..7827600) /note="source:CACAO_M_E84901_F369_scaffold_10 1 2633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7827497..7827619) /note="source:CACAO_M_S_E99244_F4_scaffold_9 9253 9375" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(7827683..7842347) /locus_tag="TCM_043595" /note="dbxref CacaoGD:Thecc1EG043595" mRNA complement(join(7827683..7827806,7838445..7838849, 7839944..7840180,7840315..7840445,7840527..7840713, 7841209..7841306,7841498..7841728,7841807..7842347)) /locus_tag="TCM_043595" /product="Transmembrane amino acid transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034729001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041523t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034729001" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage" mobile_element complement(7828106..7829895) /note="source:INTACT160_F4_scaffold_7-int 13200 14931" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7832894..7833124 /note="source:CACAO_M_E23991_F4_scaffold_4 3999 4238" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(7838466..7838849,7839944..7840180, 7840315..7840445,7840527..7840713,7841209..7841306, 7841498..7841728,7841807..7841918)) /locus_tag="TCM_043595" /note="paralog of Thecc1EG041523t1" /codon_start=1 /product="Transmembrane amino acid transporter family protein" /protein_id="EOY19003.1" /db_xref="Phytozome:GSVIVT01034729001" /db_xref="TAIR:AT1G08230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HW02" /translation="MGTHLPTSMNVSQREMDGQSNPAEKLDAGALFVLKSRGSWLHCG YHLTTSIVAPALLSLPYALSLTGWFAGVFCLTVAALVTFYAYNLLSLVLEYHAQLGQR QLRFRDMARDILGPRWGRYFVGPIQFCLCYGAVIACVLLGGQSLKYIYRLSSSKESMQ LYQFVIIFGILMLILAQIPSFHSLRHINMISLVLCLLYTACATAGSIYVGNSKNAPAK DYSVKGSGQNRVFGSFTAISIIATTYGNGIVPEIQATIAPPVKGKMFKGLCVCYAVVV TTFFSVAISGYWAFGNQAAGTTVLANFLVDGELLLPTWVLLMTNVFTFLQVAAVAVVY LQPTNEALERKFVDAEVDQFSIRNVVPRLAYRSLSVVIATTLAAMFPFFGDINAVIGA FGCIPLDFVLPMVFYNVTFKPSKQGVLFWVNTLIAIIFSVLGVLGAISSIRQVVLDTS TYSFFANLD" mobile_element complement(7844892..7846336) /note="source:CACAO_M_S_E145143_F9_scaffold_10 1 1445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7851032..7851124) /note="source:CACAO_M_S_E6055_F310_scaffold_2 1081 1175" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7854165..7860475 /locus_tag="TCM_043598" /note="dbxref CacaoGD:Thecc1EG043598" mRNA join(7854165..7854434,7855052..7855717,7856060..7856148, 7856595..7856694,7857303..7857557,7859369..7859541, 7859746..7860475) /locus_tag="TCM_043598" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034722001" /inference="similar to AA sequence:ricco:29428.m000333" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b042069t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3654t1" mRNA join(7854165..7854434,7855052..7855717,7856060..7856148, 7856595..7856694,7857303..7857557,7859369..7859541, 7859808..7860475) /locus_tag="TCM_043598" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034722001" /inference="similar to AA sequence:ricco:29428.m000333" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3654t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3654t1" CDS join(7854279..7854434,7855052..7855717,7856060..7856148, 7856595..7856694,7857303..7857557,7859369..7859541, 7859808..7860105) /locus_tag="TCM_043598" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29428.m000333" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 1" /protein_id="EOY19004.1" /db_xref="TAIR:AT2G28600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5V9" /translation="MAKGDDTVRKKKNKALRKKLNRKTDSSNVSARIASIIASKKRRK AGKRRICQGMCFSLPTLDDPFNDRLDKKVISKRETKKIMPSEVDWKIPADRKDAVPKN GSALGNDLKVDSLEKINEKMMDLKDEQKKLVTLINNVGKTRHMNSGRVQIQPGGKKIS VHGHQEQACESAHCPSKYLILCLKAIEDALHYDGTYNCEEGKSLFVNTWGVEFWRCYS VGKDILETSGSSSDVEQIAWIASTASDAISRREKEGLSFTSPFLLFLVPSKEKALKVR SLCKPLKAVGIHTVSLHPGASVDHQISGLQSCEPEFLVSTPERLLKLVSLEAIDVAGV SMLVIDGMESLSRGGYLNAIKSIRQAISGNPHTLVFNDSFSNASIPAVQNLLTGLVYR LSLNDSVASQSACIIQSIYVCSSKEERMMKGIDALDDVYWNQMIPQPLKVLYIVGKDN NVEKLVSAVKLKGYSISISSSLNIMEFENSLHSGIRGRRTVSVVATEHISSTDLGEYG VVILPDFVLSIDDYVQILSRMARQTVNGVLHSFLTEDDAQHAGPLIEILEKCGQAVPE ALRNLCHVDHPF" CDS join(7854279..7854434,7855052..7855717,7856060..7856148, 7856595..7856694,7857303..7857557,7859369..7859541, 7859746..7859899) /locus_tag="TCM_043598" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29428.m000333" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2" /protein_id="EOY19005.1" /db_xref="TAIR:AT2G28600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5V9" /translation="MAKGDDTVRKKKNKALRKKLNRKTDSSNVSARIASIIASKKRRK AGKRRICQGMCFSLPTLDDPFNDRLDKKVISKRETKKIMPSEVDWKIPADRKDAVPKN GSALGNDLKVDSLEKINEKMMDLKDEQKKLVTLINNVGKTRHMNSGRVQIQPGGKKIS VHGHQEQACESAHCPSKYLILCLKAIEDALHYDGTYNCEEGKSLFVNTWGVEFWRCYS VGKDILETSGSSSDVEQIAWIASTASDAISRREKEGLSFTSPFLLFLVPSKEKALKVR SLCKPLKAVGIHTVSLHPGASVDHQISGLQSCEPEFLVSTPERLLKLVSLEAIDVAGV SMLVIDGMESLSRGGYLNAIKSIRQAISGNPHTLVFNDSFSNASIPAVQNLLTGLVYR LSLNDSVASQSACIIQSIYVCSSKEERMMKGIDALDDVYWNQMIPQPLKVLYIVGKDN NVEKLVSAVKLKGYSISISSSLNIMEFENRNCQLLPVFVFVTDRLSFSSPVCILALEG DVQSPLLLLSTSVLQIWESMVL" gene complement(7865551..7874658) /locus_tag="TCM_043599" /note="dbxref CacaoGD:Thecc1EG043599" mRNA complement(join(7865551..7866517,7867211..7867264, 7868996..7869115,7872525..7872594,7873583..7874658)) /locus_tag="TCM_043599" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="similar to AA sequence:frave:gene33519" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(7865964..7866517,7867211..7867264, 7868996..7869115,7872525..7872594,7873583..7873963)) /locus_tag="TCM_043599" /note="dbxref frave:gene33519" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY19006.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BLV0" /translation="MWKEAMNKELKALLSNNTWSLVPLPKEERVIGNKWVLKIKRRAD GTIERYIAQLVAKGYNQKKELDYNEKFSLLAKFTIMRCLLAISVIKGWELHQMDIDNA FLHGEFCNTPYPRIETNMTLSTRQKVDLIVVQLELTTYLNSFKCNTHNSKIGLIAEDL VTYKPQNPWVQNGLQVKEKVVSLMLQFEAYDSDHLASYSLTFVVHCDIGYIIKEASLE DSKVVQTLIPQQHNLSSEIWDLLEDVTAYQRLVKRLIYLIVTQSDISYAMQVLNQLMQ APRAPRLAMAKRLARYIKKSLDHSLFYSYMNSLELEVCYDTDWATCPIIGRSILGMLI FLGDTPISWKLKKQQTVCRSLVEAKYRAMTMTIAKLVCLRDVLKELSFFYYKTYSPIR " mobile_element complement(7869764..7871591) /note="source:CACAO_M_E84896_F4_scaffold_10 1 1828" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7871901..7872284 /note="source:CACAO_M_E23991_F4_scaffold_4 9286 9659" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7872573..7872655 /note="source:CACAO_M_E52576_F245_scaffold_7 3322 3407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7873194..7873548 /note="source:CACAO_M_E23991_F4_scaffold_4 9286 9636" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7876865..7876876 /note="source:CACAO_M_S_E64023_F13_scaffold_5 16475 16486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7876877..7880041) /note="source:CACAO_M_S_E145136_F328_scaffold_10 1 3165" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7881856..7886031 /locus_tag="TCM_043600" /note="dbxref CacaoGD:Thecc1EG043600" mRNA join(7881856..7882286,7882407..7882505,7882670..7882922, 7883752..7883862,7883965..7884101,7884507..7884620, 7884721..7884920,7885044..7885238,7885369..7886031) /locus_tag="TCM_043600" /product="Nucleotide-diphospho-sugar transferases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29428.m000330" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022423t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24030.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc606t1" CDS join(7881951..7882286,7882407..7882505,7882670..7882922, 7883752..7883862,7883965..7884101,7884507..7884620, 7884721..7884920,7885044..7885238,7885369..7885531) /locus_tag="TCM_043600" /note="paralog of Thecc1EG022423t1" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein" /protein_id="EOY19007.1" /db_xref="Phytozome:POPTR_0010s24030.1" /db_xref="TAIR:AT5G03760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZR3" /translation="MDQISETSRTMIPVTFQVSQDDITGQVGLIWQQTKAPLIVPVLK GMVVLCLAMSIMLFVERVYMGIVIVFVKLFGRKPEKMYKLEPMKDDVELGYSAYPMVL VQIPMYNEKEVYQLSIGAACGLSWPADRIIIQVLDDSTDPAIKTLVELECQRWASKGI NVKYEIRDNRNGYKAGALKEGMKHSYVNQCDYVAIFDADFQPEPDFLWRTIPFLVSNP EIALVQARWKFVNSDECLMTRMQEMSLDYHFIVEQEVGSSTHAFFGFNGTAGVWRISA LNEAGGWKDRTTVEDMDLAVRASLKGWKFVYVGDLKVKNELPSTFKAYRYQQHRWSCG PANLFRKMAVEIIRNRKVSLWKKFYVIYSFFFVRKIVAHLVTFIFYCVVLPATVFVPE VEVPKWGAVYIPSIVTLLNAVGTPRSLHLLIFWILFENVMSLHRTKATFIGLLEAGRV NEWVVTEKLGDALKTKLGGKAPRKPRIQIGERIHLLELAVGAYLFFCGCYDLAFGKNR YFIFLFLQSIAFFIAGVGYVGTFVPTS" mobile_element 7888328..7888452 /note="source:INTACT73_F14_scaffold_4-int 11851 11958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7889782..7889845 /note="source:CACAO_M_E3884_F22_scaffold_1 13090 13155" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7889853..7890648) /note="source:INTACT153_F18_scaffold_9-int 4608 5395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7890649..7893750) /note="source:CACAO_M_E84893_F51_scaffold_10 1 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7893751..7898407) /note="source:INTACT153_F18_scaffold_9-int 1 4617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7898612..7898709 /note="source:CACAO_M_E3884_F22_scaffold_1 13224 13318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7899770..7899853 /note="source:CACAO_M_E3884_F22_scaffold_1 14854 14937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7900497..7901179 /note="source:CACAO_M_E3884_F22_scaffold_1 17229 17859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7902798..7902876) /note="source:CACAO_M_E3248_F5_scaffold_1 953 1029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7902807..7902886 /note="source:INTACT287_F193_scaffold_2-int 112 194" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7903084..7904294 /note="source:INTACT409F_F47_scaffold_4-int 1 1206" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7904269..7904326 /note="source:INTACT409F_F47_scaffold_4-int 1130 1186" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7904328..7904818 /note="source:INTACT409F_F47_scaffold_4-int 1130 1626" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7904879..7906444 /note="source:INTACT409F_F47_scaffold_4-int 1621 3101" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7906486..7906802 /note="source:INTACT409F_F47_scaffold_4-int 6075 6397" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7908000..7908080 /note="source:CACAO_M_E69551_F193_scaffold_9 12322 12415" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7909381..7910220) /note="source:CACAO_M_E72867_F9_scaffold_10 146 960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7910254..7911379 /note="source:INTACT70_F13_scaffold_10-int 1 1126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7911391..7914672 /note="source:CACAO_M_E72770_F13_scaffold_10 1249 4576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7914670..7917538) /note="source:CACAO_M_E84889_F230_scaffold_10 1 3250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7917539..7919902 /note="source:CACAO_M_S_E146091_F272_scaffold_11 9179 11543" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7919858..7919912) /note="source:CACAO_M_E85113_F12_scaffold_10 3317 3367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7919899..7923121 /note="source:scaffold_5_CACTA_0612 8693 11918" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7922462..7925481) /note="source:INTACT597_F267_scaffold_2-int 10661 13692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7926097..7927411) /note="source:INTACT597_F267_scaffold_2-int 8069 9356" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7926547..7927773) /note="source:scaffold_2_CACTA_0262 7602 8790" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7929253..7935748 /note="source:INTACT490_F228_scaffold_6-int 18 6507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7936873..7936957) /note="source:INTACT134F_F392_scaffold_2-int 1 82" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7940120..7942803 /locus_tag="TCM_043603" /note="dbxref CacaoGD:Thecc1EG043603" mRNA join(7940120..7940693,7942061..7942803) /locus_tag="TCM_043603" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013926t1" /note="quality class is weak, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS join(7940636..7940693,7942061..7942449) /locus_tag="TCM_043603" /note="paralog of Thecc1EG013926t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19008.1" /translation="MSLGAASTAIVDRVRSLIQDIFPFIDSLAAKFIQPIDLGWTTKL DNPFNHVVPKVTELGLSESSTSVNPTTSTIGLVSYNNKHGIDKPMSLALALESITTRS TLFTNPHESLSLVNAGFESIRSNFSTTTTSLSNPIDSNFVNENIIF" gene 7946016..7949437 /locus_tag="TCM_043605" /note="dbxref CacaoGD:Thecc1EG043605" mRNA join(7946016..7946935,7948034..7948060,7948154..7949437) /locus_tag="TCM_043605" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30169.m006504.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043621t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s02010.2" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3743t4" CDS join(7946224..7946935,7948034..7948060,7948154..7949247) /locus_tag="TCM_043605" /note="paralog of Thecc1EG043621t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY19009.1" /db_xref="Phytozome:POPTR_0015s02010.2" /db_xref="TAIR:AT1G66910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HWF7" /translation="MVIILLHFLLLLTASAVGLGPASADRDVCEPKHCKNGQPRVRYP FRLKGRQPDHCGSSGFDLSCNNKNQTVLELPRSVKLLVKRIDYVHQRIHVYDEDGCVQ KQLQNLILSASPFMYSSGSDPYYYSDSGNFTLFNCSIEDQSDYYDSSWSIPCLSGSGF YVKYVESDSGRSYLLNCRKTTDISEVPYGMMDDRKNKFDFNWTKPACGLCEVKGQGCR PNTTNTSGIECYSIHREDKGARMKLMISGLTIGSLLLLLSVIGLCWLHHLNKKEKDGQ RKIEQFLEDYKALKPSRYSYADVKRITNQFKEKLGQGGYGTVFKGTLSNDVSVAVKVL NNFKGNGEEFVNEVGSMGRIHHVNVTRLVGFCADGYNRALVYEYLPNESLEKFIFAAK GENRFLSWEKLHEIALGIAKGIEYLHQGCEQRILHFDIKPHNILLDQNFTPKISDFGL AKLCSKEQSAVSMTAARGTMGYIAPEVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNI DVTVANESQVYFPEWVYNRLDKGEELGIDIEDEGHHKIAKKLTIVGLRCIQWYPVDRP SMKSVVQMLEGEADNLTMPPNPFASKDEKKPKKPINRELAAISE" mobile_element complement(7950216..7953171) /note="source:CACAO_M_E84887_F15_scaffold_10 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7953567..7953633) /note="source:scaffold_3_CACTA_0382 11837 11899" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7953659..7954096) /note="source:INTACT280_F60_scaffold_5-int 13869 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7959980..7960446 /note="source:CACAO_M_E5899_F5_scaffold_2 20477 20963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7960453..7961171 /note="source:CACAO_M_E1841_F5_scaffold_1 4758 5468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7962779..7962856 /note="source:CACAO_M_S_E38262_F319_scaffold_4 2562 2640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7963034..7963726 /note="source:CACAO_M_E84966_F82_scaffold_10 1 694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7963830..7966398) /note="source:CACAO_M_E50407_F82_scaffold_7 1 2569" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7967094..7967406) /note="source:scaffold_3_CACTA_0382 1 316" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7971891..7972113 /note="source:CACAO_M_S_E119191_F3_scaffold_9 1 222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7972955..7975912) /note="source:CACAO_M_E639_F17_scaffold_1 7215 10188" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7977868..7978116 /note="source:CACAO_M_S_E119191_F3_scaffold_9 222 468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7978108..7978916 /note="source:INTACT296_F13_scaffold_9-int 12264 13078" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7980342..7984184 /locus_tag="TCM_043606" /note="dbxref CacaoGD:Thecc1EG043606" mRNA join(7980342..7980399,7980871..7981608,7981684..7982169, 7982308..7982431,7982522..7982921,7983014..7983346, 7983454..7983592,7983678..7984184) /locus_tag="TCM_043606" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039371t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(7981265..7981608,7981684..7982169,7982308..7982431, 7982522..7982921,7983014..7983346,7983454..7983592, 7983678..7983969) /locus_tag="TCM_043606" /note="paralog of Thecc1EG039371t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19010.1" /translation="MQGVRSDLSIVGLMKLVEDVVEANSKIDEIELHALISTSGELSR PIIKDDEDVALILLEQRNVPTMYVSIKGCQTNVMSHEEVGQYGNQLNQKEIYKASQIP KHSFHNPQQWKLRCASNQFLHSLEQMQRSGETVECVMPLSNENTTVEDNNVRLEGDTT TPEDSTTFDEGNEDLFTTGEDRFDDTSDDGLEQSQDDSSNNDCLYDSDIPICNNVEGE TEPIGGVDVRDVQCDDPIYNNPIADENWICSLDTLLDDSDQERGNAGISRTWVIAGAE RVKRSCKVRYEVGCKDKACKFSVRATQLPDKGEYWQVRTFHKPNGVTLRPKDIICEMR VQWGLECLYGKAWQVKEYAEKLVFGSPEESFQLLPSYFYMLEQENPGTVTAVATDKEE RFKYCFWSYGACIQGFRDVMLPMVAIDATHLKGRTSVYIQLLLASAMLRTKTRGCGFL AKAHHGLCGYHLKKNFKNKFKCDDVCMLFTLARDYYKVADFNRHMNQIQWIHLGTNAN LMRIGPEKWARACSPTRRYQMMTSNIAKCVNSCLKHARQILITVLIEFIRDMFQLKPI NRVELEVKDRKMDGLVNLSRKTCTCCEFQTDLLPCSHAIAAISKCNHEAIEFCADYYK TIVLVEGYSGSIRPIGHPSEWDIAGRPRRRKIPSAGEGSQARRCSQCLSYGHNRQNCP SPFAVPSTNLAPSPSQSTPPQLR" gene complement(7984909..7991842) /locus_tag="TCM_043607" /note="dbxref CacaoGD:Thecc1EG043607" mRNA complement(join(7984909..7984992,7986285..7986701, 7986872..7986968,7987058..7987272,7987350..7987553, 7987647..7987653,7988367..7988403,7988483..7988554, 7988643..7988903,7989259..7989369,7989461..7989680, 7989771..7989920,7990597..7990675,7991277..7991842)) /locus_tag="TCM_043607" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040358t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(7986354..7986701,7986872..7986968, 7987058..7987272,7987350..7987553,7987647..7987653, 7988367..7988403,7988483..7988554,7988643..7988903, 7989259..7989369,7989461..7989680,7989771..7989920, 7990597..7990675,7991277..7991347)) /locus_tag="TCM_043607" /note="paralog of Thecc1EG040358t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19011.1" /translation="MLGKCDTTVTWHRSELVRHHGGNLTGEVEKALFKRNDTTALATM LSMNEEIQRRQYEDFDSLLIVQREKWAFNVVINTHCKWSQLHYITKTLQQKGEYDAIT ESQSMDHELWFAIGKSKVQLSKQEFCLITGLKFGPMPDVFKRQYEVATDRIHARYWNG QESVKLQALLDTFYERRLGCCHWWRTSTLGMSSHGNSITLQYLQIRMGDTEMLEPTTD EALREYFVDLDVPLLESYEYMPIGHMKDRSDWGLGVRQKRISLKKKRASSGTKRMRTT TALVDELSGLKLMDEGDDHGQVGPCADSSRTTHRSSSVVEWKRSDVYGSDDRSSSTDR FVHHELGVDIDDDILGADGEHVTHVDDVVDEAVVVDVTLQSDDAEGEHVPLPESIFDA STGRDKEPDSVMHSDAVEIRSSSPESPIVHHGAAEISNPIERARLKMASQYMASPFVA PLVTRRDVREKIVEDYEVFKKDESARCNVSILGDQRAEFFTTLEDPNEEMTSEHIDAC ETIRMLHTEFLTEDARATMQVPDELRGYVEGERPTYDKKWKDVDFIIAPCNVGGHWVV AKIDLVRWTIKVVDSARTLNAKDNGVRAGQMTPLTTMMPFICHQASISTTYVRRDVI" mobile_element 7993391..7993759 /note="source:CACAO_M_E1364_F82_scaffold_1 2944 3303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7995223..7996310 /note="source:CACAO_M_S_E119191_F3_scaffold_9 514 1600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7996297..7996608) /note="source:INTACT39F_F22_scaffold_1-int 8234 8541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7996587..7997351 /note="source:CACAO_M_S_E64023_F13_scaffold_5 3936 4682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7997283..7998236) /note="source:scaffold_9_CACTA_0931 15826 16767" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7998235..7999529 /note="source:CACAO_M_S_E119191_F3_scaffold_9 1595 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8000217..8000912 /note="source:INTACT312_F195_scaffold_2-int 1820 2518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8000977..8002871) /note="source:CACAO_M_E24592_F195_scaffold_4 19163 20969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8002872..8003206 /note="source:CACAO_M_E23035_F156_scaffold_4 1 335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8004516..8004708) /note="source:CACAO_on_S_E58_scaffold_2 11627 11841" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8004537..8005409) /note="source:CACAO_M_E5362_F98_scaffold_2 1 901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8005410..8008342) /note="source:INTACT41F_F338_scaffold_1-int 4399 7334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8008777..8011442 /note="source:INTACT312_F195_scaffold_2-int 430 3088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8012937..8014932) /note="source:INTACT481_F226_scaffold_1-int 8454 10457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8019286..8019304 /note="source:scaffold_2_CACTA_0259 5405 5422" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8019305..8021790 /note="source:CACAO_M_E14375_F318_scaffold_3 1 2444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8022043..8022382) /note="source:CACAO_M_S_E5978_F319_scaffold_2 1 340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8022505..8022666 /note="source:scaffold_2_CACTA_0262 695 787" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8029851..8029861 /note="source:CACAO_on_S_E58_scaffold_2 1930 1939" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8029862..8030415) /note="source:CACAO_M_E84863_F322_scaffold_10 1542 2095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8031135..8032699) /note="source:CACAO_M_E84863_F322_scaffold_10 1 2333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8033106..8033654) /note="source:CACAO_M_E52981_F9_scaffold_8 3639 4190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8033712..8034526) /note="source:CACAO_M_E5326_F22_scaffold_2 21810 22644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8034517..8034763) /note="source:CACAO_M_E35511_F5_scaffold_5 12729 12916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8035385..8035459) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18869 18943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8035563..8035827) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18606 18881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8035815..8036048) /note="source:INTACT518_F239_scaffold_2-int 8023 8222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8037043..8038019) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6115 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8038046..8038922) /note="source:INTACT146F_F14_scaffold_2-int 4949 5823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8040481..8042520) /note="source:CACAO_M_S_E109853_F60_scaffold_9 10128 12162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8042506..8044837) /note="source:CACAO_M_S_E109853_F60_scaffold_9 4660 6688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8044515..8045069 /note="source:CACAO_on_S_E58_scaffold_2 8207 8767" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8044827..8045330) /note="source:INTACT518_F239_scaffold_2-int 2639 3141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8045441..8048151 /note="source:CACAO_M_S_E38130_F233_scaffold_4 1 2788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8048378..8049145) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8049188..8055008) /note="source:INTACT740_F9_scaffold_10-int 1 5891" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8055307..8056846) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18929 20444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8057575..8058195) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17896 18519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8059707..8062258 /note="source:CACAO_M_E453_F12_scaffold_1 3364 6005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8067274..8067359 /note="source:CACAO_M_E73087_F12_scaffold_10 10568 10651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8067360..8067374 /note="source:scaffold_5_CACTA_0591 4774 4847" /mobile_element_type="transposon:TIR/CACTA" gene 8075912..8078832 /locus_tag="TCM_043611" /note="dbxref CacaoGD:Thecc1EG043611" mRNA join(8075912..8076678,8076914..8077073,8078313..8078832) /locus_tag="TCM_043611" /product="H0502G05.11 protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(8076306..8076678,8076914..8077073,8078313..8078400) /locus_tag="TCM_043611" /codon_start=1 /product="H0502G05.11 protein" /protein_id="EOY19012.1" /translation="MLEDNNKRMLETISQLASSTPTIFQAQPVHLNGDEDAIDGSTPL AVNTNVNGGNRENVVDVVSVENPNLNNSSVVVRPTITSIATISATTTQGFMTMEELQK LLDQKNKRFNFLEFDFKFPYPARCLGKSSSSLLKRRLISLIWEENIKSPENTSWNTFV IPRNLPWWLMKLIRCKMRELELFLGQHGLPPASLKEKGFGFSATIG" mobile_element complement(8077011..8077688) /note="source:scaffold_1_CACTA_0011 8376 9051" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8077718..8077841) /note="source:CACAO_M_E4063_F12_scaffold_2 7580 7707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8079170..8079921 /note="source:INTACT405F_F91_scaffold_4-int 17330 18091" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8079922..8080140) /note="source:scaffold_1_CACTA_0011 8164 8381" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8079949..8080255 /note="source:CACAO_M_E3248_F5_scaffold_1 8442 8682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8080421..8081144 /note="source:CACAO_M_E3248_F5_scaffold_1 2939 3653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8081488..8082269 /note="source:scaffold_5_CACTA_0591 14674 15449" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8082397..8082950) /note="source:INTACT537_F22_scaffold_2-int 10358 10910" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8082952..8086126) /locus_tag="TCM_043612" /note="dbxref CacaoGD:Thecc1EG043612" mRNA complement(join(8082952..8083560,8083638..8083818, 8083922..8083938,8084115..8084274,8084539..8084831, 8084980..8085038,8086063..8086126)) /locus_tag="TCM_043612" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018183t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(8083334..8083560,8083638..8083818, 8083922..8083938,8084115..8084274,8084539..8084831, 8084980..8085016)) /locus_tag="TCM_043612" /note="paralog of Thecc1EG018183t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19013.1" /translation="MPRTHILSKIHYERGEDHFWEEVRARQVDQHPSEPVGYDWNRLY SEAPSHKRSGIRGLSILRFERGEFPLSTTKLGSNFQFIHGWEEWVNKLLKNPTYVKLP SSVGILDVVAQFSSGIGVSNKKFNAKGIEISVLEYPDQKHDLVALIIFWLARHILPGC PDDDVPMGKSLSKTSKVARFSSGIGVSNRKFNAKGIEIALLEYPDHKHDLVALIIFWL ARHILPGCPDDGSIYKRLDLYQLKIVESAGRYKVLTNVDAFFIQMCLWERFGTCTPVP NACLFASVSMNSPLSRNNYRAWAWHDQL" mobile_element complement(8090819..8093779) /note="source:CACAO_M_E84847_F143_scaffold_10 1 2961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8094602..8110386) /note="source:INTACT125_F13_scaffold_10-int 1 15785" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8095920..8096904 /locus_tag="TCM_043614" /note="dbxref CacaoGD:Thecc1EG043614" mRNA 8095920..8096904 /locus_tag="TCM_043614" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028116t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s20655.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage" CDS 8095937..8096272 /locus_tag="TCM_043614" /note="paralog of Thecc1EG028116t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19014.1" /db_xref="Phytozome:POPTR_0005s20655.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BLV7" /translation="MPLTVNVVTNELMPKPRFEWTEAETKKVQINFKTINTLHCALTP TEFNKVSSCIAAKQVWEKLKIIHEGTSQVKESKIALLTHNYEMFKMEPGEDITSMLDR FTNITNKLS" gene complement(8114880..8120834) /locus_tag="TCM_043617" /note="dbxref CacaoGD:Thecc1EG043617" mRNA complement(join(8114880..8115092,8117047..8117195, 8117971..8118695,8119474..8119546,8119712..8120230, 8120447..8120834)) /locus_tag="TCM_043617" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009412" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(8114941..8115092,8117047..8117195, 8117971..8118695,8119474..8119546,8119712..8120230, 8120447..8120493)) /locus_tag="TCM_043617" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19015.1" /translation="MAFKGIGLSGAYEIKWPLFVDKAMANGSQSSVARVCLEYDCRQP PVEQVWIVVQNRETGAVIRGYSQCVEFLRMPDYCSHYCHVGHSESVCLVMGNKPVKLG NNNAPPFGQSKLANKGTRVQIRELTTVLNDQNPSNEEPMSKIDKRKSIVLEEPPKQGK EWQVVRQSGKSGTKNSKGVKITLEESKDVVDQMKDWGRVSSSDCPALKVNEATMRNIK VLAILEPMAKEDRMEFFRRRLGFERVVSNCSQKIWLFHSHEVYCEVLVDHVQCLHVKI NLPWFSNLLFVTIIYAKCTRLERKDLWTYLRSLSSDMEGPWLAGGDFNSIFSRYERLY GATLHHVSIEDFANTLLDCGLLDAGFEGNSFTWTNDHMLQRLDRVLYNREWAELFSST KVQHLARDTSDHYPLLINYSMTSQRGPLAFYFLHAWTKHHTFMSFVERLWKFPIQTKG LKAFWLSKILPTIISDNQSGFVSGRIISDNILLAQELIGKLDYKARRGNVVLKLACGG VLRDYTSTLIFGFSANLGPTNSLKAKLLALQKVYFYAKLTIFLESG" gene 8121926..8251545 /locus_tag="TCM_043618" /note="dbxref CacaoGD:Thecc1EG043618" mRNA join(8121926..8122065,8240604..8241036,8250125..8250151, 8250245..8251545) /locus_tag="TCM_043618" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s02010.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043621t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s02010.2" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc466t1" CDS join(8121991..8122065,8240604..8241036,8250125..8250151, 8250245..8251338) /locus_tag="TCM_043618" /note="paralog of Thecc1EG043621t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY19016.1" /db_xref="Phytozome:POPTR_0015s02010.2" /db_xref="TAIR:AT1G66920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HWE9" /translation="MEQERQVDLVVDLVRHIDYVNQRIQVYDEDGCVQKQLQNLTLSA SPFTFRSDIDPYYDSKPGNFTLFNCSIEDQSNDYDNYGSISCLSVPGFYVKYLDSDYG GYDLLNCSKTIDIIDIPRGLMSDQKNKFYFSWTNPACGSCEIQGKGCRRNTTKALGIE CYYIHMDHKGARMKLMISGLTIGSLLLLLSVIGLCWLHHLNKKEKEGQRKIEQFLEDY KALKPSRYSYADIKRITNQFKEKLGQGGYGTVFKGTLSNDVSVAVKVLNNFKGNGEEF VNEVGSMGRIHHVNVTRLVGFCADGYNRALVYEYLPNESLEKFIFAAKGENRFLSWEK LHEIALGIAKGIEYLHQGCEQRILHFDIKPHNILLDQNFTPKISDFGLAKLCSKEQSA VSMTAARGTMGYIAPEVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVTVANESQV YFPEWVYNRLDKGEELGIDIEDEGHHKIAKKLTIVGLRCIQWYPVDRPSMKSVVQMLE GEADNLTMPPNPFASKDEKKPKKPINRELAAISE" mobile_element complement(8123143..8124064) /note="source:scaffold_1_CACTA_0009 12909 13828" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8123749..8127163) /note="source:CACAO_Mutator_E1149_scaffold_5 10279 13714" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8127148..8132314) /note="source:CACAO_on_S_E176_scaffold_5 5 5077" /mobile_element_type="transposon:TIR/Mutator" gene 8131761..8145984 /locus_tag="TCM_043621" /note="dbxref CacaoGD:Thecc1EG043621" mRNA join(8131761..8131794,8134508..8135007,8135130..8135389, 8136832..8136858,8136952..8138639,8145818..8145984) /locus_tag="TCM_043621" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s02010.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043605t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s02010.2" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc466t9" mobile_element 8132129..8132492 /note="source:scaffold_1_CACTA_0009 12785 13169" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8132515..8132984 /note="source:CACAO_on_E193_scaffold_6 11424 11903" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8132801..8133220) /note="source:CACAO_Mutator_E1149_scaffold_5 1 354" /mobile_element_type="transposon:TIR/Mutator" mobile_element 8133742..8134370 /note="source:CACAO_M_E33977_F20_scaffold_4 15618 16245" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(8134655..8135007,8135130..8135389,8136832..8136858, 8136952..8138045) /locus_tag="TCM_043621" /note="paralog of Thecc1EG043605t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY19017.1" /db_xref="Phytozome:POPTR_0015s02010.2" /db_xref="TAIR:AT1G66920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HWF7" /translation="MQMVIILCHFLLVLSASAVGLGPVSPDQDACEPKHCKPGQPSVR YPFRLKGRQPDHCGSSGFDLSCNNKNQTVLELPRSVKLLVKHIDYVNQRIQVYDEDGC VQKQLQNLTLFASPFTISCLSVPGFYVEYFDSDDGGYDLLNCSKTIDIIDIPRGLMSD QKNKFYFSWTNPACGSCEIQGKGCRRNTTKALGIECYYIHMDHKGARMKLMISGLTIG SLLLLLSVIGLCWLHHLNKKEKEGQRKIEQFLEDYKALKPSRYSYADIKRITNQFKEK LGQGGYGTVFKGTLSNDVSVAVKVLNNFKGNGEEFVNEVGSMGRIHHVNVTRLVGFCA DGYNRALVYEYLPNESLEKFIFAAKGENRFLSWEKLHEIALGIAKGIEYLHQGCEQRI LHFDIKPHNILLDQNFTPKISDFGLAKLCSKEQSAVSMTAARGTMGYIAPEVLSRNFG NVSYKSDVYSFGMLLLEMVGGRKNIDVTVANESQVYFPEWVYNRLDKGEELGIDIEDE GHHKIAKKLTIVGLRCIQWYPVDRPSMKSVVQMLEGEADNLTMPPNPFASKDEKKPKK PINRELAAISE" mobile_element complement(8139972..8142236) /note="source:CACAO_M_E84824_F245_scaffold_10 682 2946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8142231..8143005) /note="source:CACAO_M_E84824_F245_scaffold_10 1 779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8146456..8148993) /note="source:CACAO_M_E33213_F12_scaffold_4 8118 10584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8149943..8150251 /note="source:CACAO_M_S_E15173_F4_scaffold_2 686 859" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8150246..8150472) /note="source:CACAO_M_E42809_F5_scaffold_5 9363 9589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8150457..8150525 /note="source:CACAO_on_S_E58_scaffold_2 1928 1995" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8150470..8153523) /note="source:CACAO_M_E50591_F201_scaffold_7 704 4630" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8153626..8153921 /note="source:CACAO_M_E24592_F195_scaffold_4 3094 3392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8154175..8154429) /note="source:CACAO_M_S_E31635_F14_scaffold_3 14795 15048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8155762..8155988) /note="source:CACAO_M_E42809_F5_scaffold_5 9363 9589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8155973..8155985 /note="source:CACAO_on_S_E58_scaffold_2 1928 1939" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8155986..8158298) /note="source:CACAO_M_E50591_F201_scaffold_7 704 3014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8157729..8159476 /note="source:INTACT568_F81_scaffold_2-int 1811 3526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8158435..8160237) /note="source:CACAO_M_E52012_F318_scaffold_7 5649 7437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8159473..8163574 /note="source:INTACT568_F81_scaffold_2-int 1811 7357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8163499..8163582) /note="source:INTACT695_F301_scaffold_5-int 11846 11928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8163575..8171192) /note="source:INTACT511_F7_scaffold_4-int 2566 10133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8171190..8173125 /note="source:CACAO_M_S_E85455_F7_scaffold_7 1065 2990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8173188..8173859 /note="source:CACAO_M_S_E15173_F4_scaffold_2 889 1570" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8173859..8176467) /note="source:CACAO_M_E84835_F369_scaffold_10 1 2609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8176468..8176766 /note="source:CACAO_M_S_E68231_F4_scaffold_6 1563 1861" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8179308..8180312 /note="source:INTACT334_F200_scaffold_2-int 4711 5727" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8181359..8183219) /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8185272..8187795 /note="source:CACAO_M_E42395_F3_scaffold_5 1 2545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8187795..8191298) /note="source:CACAO_M_E48538_F49_scaffold_6 11101 13726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8191299..8192591 /note="source:CACAO_M_E12371_F86_scaffold_3 1 1296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8192575..8197492 /note="source:CACAO_M_E42630_F86_scaffold_5 2869 9335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8197475..8197538) /note="source:CACAO_M_E50553_F86_scaffold_7 1 56" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8197539..8200653 /note="source:INTACT460_F49_scaffold_8-int 3695 6853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8200638..8202529 /note="source:CACAO_M_E3884_F22_scaffold_1 7018 8882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8221005..8221511 /note="source:CACAO_M_S_E14008_F3_scaffold_2 16 525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8221612..8222039 /note="source:CACAO_M_S_E64889_F3_scaffold_5 602 1029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8227701..8228682) /note="source:INTACT904F_F49_scaffold_6-int 5721 6709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8228683..8231406) /note="source:CACAO_M_E48538_F49_scaffold_6 12210 13726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8231060..8236536 /note="source:CACAO_M_E12058_F3_scaffold_2 2433 7959" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8244105..8244952 /locus_tag="TCM_043627" /note="dbxref CacaoGD:Thecc1EG043627" mRNA 8244105..8244952 /locus_tag="TCM_043627" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038700001.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043621t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s02010.2" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage" CDS 8244141..8244875 /locus_tag="TCM_043627" /note="paralog of Thecc1EG043621t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19018.1" /db_xref="Phytozome:POPTR_0015s02010.2" /translation="MQMVIILCHFLLVLSASAVGLGPVSPDQDACEPKHCKPGQPSVR YPFRLKGRQPDHCGSSGFDLSCNNKNQTVLELPRSVKLLVKHIDYVNQRIQVYDEDGC VQKQLQNLTLFASPFTFRSDTDPYYDSKPGNFTLFNCSIEDQSNDYDNDWSISCLSVP GFYVEYFDSDDGGYDLLNCSKTIDIIDIPRGLMSDQKNKFYFSWTNPACGSCEIQGKG CRRNTTKALGIECYYIHMDHKGATYI" mobile_element complement(8253265..8256210) /note="source:CACAO_M_E84824_F245_scaffold_10 1 2946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8263147..8263285 /note="source:CACAO_M_S_E15173_F4_scaffold_2 13082 13399" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8263286..8263455) /note="source:INTACT280_F60_scaffold_5-int 1031 1201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8263420..8263676 /note="source:INTACT265_F12_scaffold_7-int 6281 6536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8263661..8263673 /note="source:CACAO_on_S_E58_scaffold_2 1928 1939" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8263674..8265981) /note="source:CACAO_M_E50591_F201_scaffold_7 704 3014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8265862..8270319 /note="source:INTACT568_F81_scaffold_2-int 2245 7248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8268230..8270602) /note="source:INTACT419F_F81_scaffold_4-int 663 3035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8270482..8271190 /note="source:CACAO_M_E59343_F81_scaffold_9 2249 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8271115..8271198) /note="source:INTACT695_F301_scaffold_5-int 11846 11928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8271191..8278808) /note="source:INTACT511_F7_scaffold_4-int 2566 10133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8278806..8280742 /note="source:CACAO_M_S_E85455_F7_scaffold_7 1065 2990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8280803..8281276 /note="source:CACAO_M_S_E1495_F60_scaffold_1 711 1203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8281277..8284040) /note="source:CACAO_M_E84815_F98_scaffold_10 1 2753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8284041..8284232 /note="source:CACAO_M_S_E1495_F60_scaffold_1 17356 17548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8284234..8284708 /note="source:INTACT649F_F368_scaffold_5-int 10123 10598" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8286038..8287593 /note="source:INTACT265_F12_scaffold_7-int 8199 9834" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8292159..8292897 /locus_tag="TCM_043630" /note="dbxref CacaoGD:Thecc1EG043630" mRNA 8292159..8292897 /locus_tag="TCM_043630" /product="Malectin/receptor-like protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g025630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043621t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038703001" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc469t9" CDS 8292398..8292844 /locus_tag="TCM_043630" /note="paralog of Thecc1EG043621t1" /codon_start=1 /product="Malectin/receptor-like protein kinase family protein, putative" /protein_id="EOY19019.1" /db_xref="Phytozome:GSVIVT01038703001" /db_xref="TAIR:AT5G39020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HWE9" /translation="MTAARGTMGYIAPEVLSRNFGNVSYKSDVYSFGMLLLEMVGGRK NIDVTLANESQVYFPEWVYNRLDKGQELGIDIEDEGHHKIAKKLTIVGLRCIQWYPVD RPSMRSVVQMSEGEADNLTMRSNPFASKDEKKPKKPINRELAAISE" mobile_element complement(8301972..8302092) /note="source:CACAO_M_E11098_F15_scaffold_2 9124 9252" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8302221..8302327) /note="source:CACAO_M_E11098_F15_scaffold_2 8910 9023" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8308876..8311033) /locus_tag="TCM_043631" /note="dbxref CacaoGD:Thecc1EG043631" mRNA complement(join(8308876..8309838,8310047..8310495, 8310739..8311033)) /locus_tag="TCM_043631" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028147t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(join(8309685..8309838,8310047..8310192)) /locus_tag="TCM_043631" /note="paralog of Thecc1EG028147t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19020.1" /translation="MCGVEVHMLVLMWCGSVHDDICHVRCGSAHDGISYVRCGSAHDD FSYVREKLSVAWGLDPILVFTAARKSRVVPAQNFAIVKLYSRCSKKLFALLGYLL" mobile_element complement(8319318..8320181) /note="source:scaffold_1_CACTA_0009 12970 13828" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8320016..8323692 /note="source:CACAO_on_E193_scaffold_6 1 3654" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8323680..8323726) /note="source:CACAO_Mutator_E1149_scaffold_5 10080 10126" /mobile_element_type="transposon:TIR/Mutator" mobile_element 8323721..8323806 /note="source:CACAO_on_E193_scaffold_6 3756 3841" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8323788..8325954) /note="source:scaffold_1_CACTA_0009 5375 9398" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8325955..8328490 /note="source:CACAO_on_E193_scaffold_6 9362 11903" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8328491..8330504) /note="source:scaffold_1_CACTA_0009 1630 5374" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8331300..8331355) /note="source:INTACT189_F49_scaffold_5-int 1384 1441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8331356..8334305) /note="source:CACAO_M_S_E145039_F15_scaffold_10 1 2950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8334636..8334734 /note="source:CACAO_M_E1841_F5_scaffold_1 28019 28117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8334946..8335006 /note="source:CACAO_M_E1841_F5_scaffold_1 28129 28189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8335248..8335851) /note="source:INTACT189_F49_scaffold_5-int 17863 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8337781..8337859 /note="source:INTACT189_F49_scaffold_5-int 19470 19506" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8337925..8338362) /note="source:INTACT280_F60_scaffold_5-int 13870 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8339106..8340255) /note="source:INTACT280_F60_scaffold_5-int 8472 9684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8341128..8344026) /note="source:CACAO_M_S_E145035_F83_scaffold_10 1 2899" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8350578..8351294) /note="source:CACAO_M_S_E4911_F76_scaffold_1 2972 3691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8351104..8351319 /note="source:INTACT583_F15_scaffold_11-int 2585 2802" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8355766..8362248 /locus_tag="TCM_043636" /note="dbxref CacaoGD:Thecc1EG043636" mRNA join(8355766..8355944,8356314..8356709,8356811..8357037, 8357317..8357564,8357657..8358011,8359107..8359818, 8362017..8362248) /locus_tag="TCM_043636" /product="Cytochrome P450 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02630.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042318t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02630.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3648t2" mRNA join(8356313..8356709,8356846..8357037,8357317..8357564, 8357657..8358011,8359107..8359640) /locus_tag="TCM_043636" /product="Cytochrome P450 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02630.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042318t1" /inference="similar to AA sequence:frave:gene01176" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc817t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3648t2" CDS join(8356415..8356709,8356811..8357037,8357317..8357564, 8357657..8358011,8359107..8359532) /locus_tag="TCM_043636" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042318t1" /codon_start=1 /product="Cytochrome P450 isoform 1" /protein_id="EOY19021.1" /db_xref="Phytozome:POPTR_0008s02630.1" /db_xref="TAIR:AT5G24910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL41" /translation="MELQLLSIKVMVTALLLGLLGVLVYLFEALILKPERLRSKLGKQ GIQGPPPSILLGNIREMKKIQSKVSKLSREGDQVIIHNCCSTVFPFLDQWRKQYGSTF MFSLGNIQILLISDPDVVKDITICTSLDLGKPSYQHKQNGPLLGQGILTSNGAVWAHQ RKILAPELYMEKVKGMMNLMAQSSVTVVDSWNSKIDSEGGVADIKIDDYMRSFSGDVI SRACFGSNYSKGEEIFLKLRDLKKALSKKFFSTGIPGIRYLPTKANREGWKLEKEIRA LILKVVKERKEAKSEKDLLQMILESATSSDLGQEATDSFIVDNCKNIYLAGYETTAVS ATWTLMLLASNPEWQDKARAEVLEICGGELPDATMLRKMKTLTMVINESLRLYPPVPV VSRELLEDMKFGDIHVPKGVSIWTLVVTLHQDPNIWGPDADEFNPERFADGVAAACKL PHVYMPFGVGPRICLGQNFAMAELKILLALILSNFKFSLSPKYVHSPTMRLAVEPEHG VNLLLKRL" CDS join(8357023..8357037,8357317..8357564,8357657..8358011, 8359107..8359532) /locus_tag="TCM_043636" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene01176; paralog of Thecc1EG042318t1" /codon_start=1 /product="Cytochrome P450 isoform 2" /protein_id="EOY19022.1" /db_xref="TAIR:AT5G24910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL41" /translation="MEKVKGMMNLMAQSSVTVVDSWNSKIDSEGGVADIKIDDYMRSF SGDVISRACFGSNYSKGEEIFLKLRDLKKALSKKFFSTGIPGIRYLPTKANREGWKLE KEIRALILKVVKERKEAKSEKDLLQMILESATSSDLGQEATDSFIVDNCKNIYLAGYE TTAVSATWTLMLLASNPEWQDKARAEVLEICGGELPDATMLRKMKTLTMVINESLRLY PPVPVVSRELLEDMKFGDIHVPKGVSIWTLVVTLHQDPNIWGPDADEFNPERFADGVA AACKLPHVYMPFGVGPRICLGQNFAMAELKILLALILSNFKFSLSPKYVHSPTMRLAV EPEHGVNLLLKRL" mobile_element 8358553..8358600 /note="source:CACAO_M_E58819_F24_scaffold_9 15336 15385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8358567..8358612) /note="source:CACAO_M_S_E32752_F12_scaffold_4 4117 4162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8360573..8360863 /note="source:INTACT1575F_F97_scaffold_9-int 7795 8089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8360604..8365457) /note="source:CACAO_M_E84806_F15_scaffold_10 5261 10114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8365901..8371160) /note="source:CACAO_M_E84806_F15_scaffold_10 1 5260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8374896..8376734 /note="source:CACAO_M_E42395_F3_scaffold_5 1 1856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8376737..8379525) /note="source:CACAO_M_E44273_F87_scaffold_6 1 2791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8379526..8381050 /note="source:CACAO_M_E42395_F3_scaffold_5 1854 3395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8381442..8381532) /note="source:CACAO_M_E43428_F369_scaffold_5 1257 1348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8381453..8382588 /note="source:CACAO_M_E42395_F3_scaffold_5 3496 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8382570..8383037 /note="source:CACAO_M_E42395_F3_scaffold_5 17485 17955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8383037..8383628 /note="source:INTACT224_F176_scaffold_8-int 18184 18766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8383100..8386391) /note="source:INTACT223_F175_scaffold_5-int 3945 7236" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8384375..8386121) /locus_tag="TCM_043642" /note="dbxref CacaoGD:Thecc1EG043642" mRNA complement(8384375..8386121) /locus_tag="TCM_043642" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023614t1" /inference="similar to AA sequence:Phytozome:Glyma04g32860.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(8384649..8385536) /locus_tag="TCM_043642" /note="paralog of Thecc1EG023614t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19023.1" /db_xref="Phytozome:Glyma04g32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XUB1" /translation="MFTKGTDGVLRYGTKLYVPDGDGLRKEILEEAHMAAYMVHPGAI KMYQDLKEVYWWEGLKKNVAEFISKCLVCQQVKAKHQKPARLLQPLLVPEWKWEHIAI DFVMGLPRTSRGYDSIWIIVDRLTKSTHFFLVKTTYGAAQYARIYVDEIMRLHGIPIS IVSSRGAQFTSRFWGKLQEALGIKLDFSTAFHPQTDGQSEWTIQTLEDMLRACVIDLG VKWDRYLPLVEFAYNNSFQVSIQMAPFEALYGWRCRSPIRWLEVGERKLLGLELVQDA FKKIHMIRQRMLSAQSRQK" mobile_element complement(8386392..8389321) /note="source:CACAO_M_E84804_F44_scaffold_10 1 2930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8389322..8392879 /note="source:INTACT224_F176_scaffold_8-int 8739 12269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8393205..8394750 /note="source:scaffold_4_CACTA_0493 105 1636" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8394733..8398718 /note="source:INTACT224_F176_scaffold_8-int 8207 12202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8399771..8400478 /note="source:INTACT224_F176_scaffold_8-int 1603 2312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8400479..8403363) /note="source:INTACT597_F267_scaffold_2-int 8071 9769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8404919..8405631) /note="source:INTACT597_F267_scaffold_2-int 5958 6660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8405632..8408305 /note="source:CACAO_M_S_E118655_F231_scaffold_9 1 2660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8408306..8408513 /note="source:INTACT329_F199_scaffold_2-int 1687 1894" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8408452..8414516) /locus_tag="TCM_043645" /note="dbxref CacaoGD:Thecc1EG043645" mRNA complement(join(8408452..8408481,8409351..8409679, 8413971..8414516)) /locus_tag="TCM_043645" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040057t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage" CDS complement(8409352..8409648) /locus_tag="TCM_043645" /note="paralog of Thecc1EG040057t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19024.1" /translation="MTSSNSRQMCQSSPYCVRCGTMHVGPCAQSYDVCFNCGQPGHMR RDSPYEGRSQGTCHGYVQLASAVASAISPLARRSRVDKGKGITSIQSRPTESVP" mobile_element complement(8410590..8413184) /note="source:CACAO_M_S_E145015_F231_scaffold_10 1 2595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8415588..8415847 /note="source:INTACT170_F12_scaffold_5-int 5663 5924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8415983..8416079) /note="source:CACAO_M_E1841_F5_scaffold_1 25723 25816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8416000..8419027 /note="source:CACAO_M_E65323_F12_scaffold_9 7736 10746" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8417606..8425901 /locus_tag="TCM_043647" /note="dbxref CacaoGD:Thecc1EG043647" mRNA join(8417606..8417742,8423553..8423808,8424892..8425901) /locus_tag="TCM_043647" /product="Integrase core domain containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013304t1" /inference="similar to AA sequence:Phytozome:Glyma14g01400.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.31 coverage" mobile_element complement(8417957..8420279) /note="source:scaffold_2_CACTA_0262 14560 16912" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8419471..8421090 /note="source:INTACT329_F199_scaffold_2-int 2404 4539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8421083..8421661 /note="source:CACAO_M_E65323_F12_scaffold_9 10164 10741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8421578..8421744) /note="source:CACAO_M_E1841_F5_scaffold_1 22865 23059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8421998..8422053) /note="source:scaffold_6_CACTA_0711 618 673" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8422006..8422380) /note="source:CACAO_M_E1841_F5_scaffold_1 14789 15161" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 8425182..8425589 /locus_tag="TCM_043647" /note="paralog of Thecc1EG013304t1" /codon_start=1 /product="Integrase core domain containing protein, putative" /protein_id="EOY19025.1" /db_xref="Phytozome:Glyma14g01400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0KIP7" /translation="MYAFDKFRSYLIGTKVIVYTDHSVIKYLIAKRDANPRLMRWILL LQEFDLEIKDRKGLENQVTDHLSRLKHDNQGKNLTLINQSFPNEQVLYVGQKNLSWFA DYVNYIVSKLLHLNLNFHQRKKFLHDVRLYVSD" mobile_element 8430549..8431730 /note="source:scaffold_3_CACTA_0388 8454 9622" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8431719..8431733 /note="source:CACAO_M_E11533_F12_scaffold_2 7093 7107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8431734..8434076) /note="source:CACAO_M_E50528_F15_scaffold_7 390 2731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8433380..8434329 /note="source:CACAO_M_E22446_F15_scaffold_3 1875 2823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8434330..8434449 /note="source:CACAO_M_E43428_F369_scaffold_5 1272 1410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8434337..8435697) /note="source:CACAO_M_E11054_F12_scaffold_2 7421 8727" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8434942..8444604) /note="source:scaffold_10_CACTA_0139 1 9663" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8441632..8445937) /note="source:CACAO_M_S_E17765_F76_scaffold_3 12086 16460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8445581..8446066 /note="source:INTACT302_F7_scaffold_7-int 7502 7987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8446067..8447625) /note="source:CACAO_M_E11098_F15_scaffold_2 10394 11960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8449488..8450098) /note="source:INTACT280_F60_scaffold_5-int 9678 10278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8451037..8454995) /note="source:CACAO_LINE_E_41_scaffold_10 1 3959" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(8455721..8456970) /note="source:CACAO_M_E11098_F15_scaffold_2 9146 10400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8456889..8456987 /note="source:INTACT103_F9_scaffold_4-int 16572 16675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8459028..8459742) /note="source:CACAO_M_E1841_F5_scaffold_1 4758 5466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8461462..8462160 /note="source:INTACT103_F9_scaffold_4-int 17448 18106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8462252..8462366 /note="source:INTACT103_F9_scaffold_4-int 18093 18215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8462390..8463230) /note="source:CACAO_M_E1841_F5_scaffold_1 4640 5466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8463236..8466355) /note="source:scaffold_2_CACTA_0262 11404 14559" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8466356..8468318 /note="source:INTACT496_F230_scaffold_5-int 1064 4403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8467486..8470594) /note="source:scaffold_2_CACTA_0262 11402 14559" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8470593..8474750) /note="source:INTACT224_F176_scaffold_8-int 13899 17987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8475144..8476100) /note="source:INTACT224_F176_scaffold_8-int 2831 3736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8476444..8476556) /note="source:INTACT312_F195_scaffold_2-int 328 441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8478467..8478874 /note="source:CACAO_M_S_E124255_F302_scaffold_10 271 679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8478865..8478943 /note="source:CACAO_M_E34534_F369_scaffold_5 7838 7919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8480591..8487115 /note="source:INTACT595_F266_scaffold_7-int 1855 8380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8488121..8488853) /note="source:INTACT146F_F14_scaffold_2-int 9637 10380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8490320..8490592 /note="source:CACAO_M_E43831_F302_scaffold_5 2376 2653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8490693..8491251 /note="source:INTACT597_F267_scaffold_2-int 11297 11864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8491432..8491487 /note="source:INTACT224_F176_scaffold_8-int 15251 15306" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8491655..8494709) /locus_tag="TCM_043652" /note="dbxref CacaoGD:Thecc1EG043652" mRNA complement(join(8491655..8492618,8494542..8494709)) /locus_tag="TCM_043652" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003160t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 8491675..8491725 /note="source:INTACT410F_F357_scaffold_4-int 2830 2879" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(8492181..8492591) /locus_tag="TCM_043652" /note="paralog of Thecc1EG003160t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19026.1" /translation="MSSSEEKGNDSHNIEEGSMDSIVESRYAQEGESQGSNPSQVAIG WIPLGAKIVFKCLKSLERMANTKNDPKKKDKEKVEEVAIGSYRPRKVSVVLDFPPDCG RSAAFVKRKDYVRMRRILRRLTTIWNMIHQCVQV" mobile_element 8496181..8497440 /note="source:CACAO_M_E5899_F5_scaffold_2 20523 21828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8497544..8498260 /note="source:CACAO_M_E5326_F22_scaffold_2 21958 22673" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8502610..8503281 /locus_tag="TCM_043653" /note="dbxref CacaoGD:Thecc1EG043653" mRNA join(8502610..8502872,8503009..8503281) /locus_tag="TCM_043653" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3652t1" CDS join(8502663..8502872,8503009..8503122) /locus_tag="TCM_043653" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19027.1" /translation="MELLMLLAKVTGTVLLLGFSSMFVRLFDALVLTPKRIHSQLGMQ EIRDNLPSFLPGNFQVPKKTQHKRKQVQHICFHQGKYRFCRGTIRIWPNIGSTPEDDS GPYVR" mobile_element complement(8504113..8506355) /note="source:CACAO_PIF_E144_scaffold_10 11083 13335" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 8506356..8509534 /note="source:CACAO_M_E71405_F316_scaffold_10 4800 7988" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8509535..8509964 /note="source:CACAO_on_E33_A_scaffold_3 9860 10297" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(8509959..8510534) /note="source:CACAO_PIF_E31_scaffold_2 1271 1868" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(8510695..8513241) /note="source:INTACT713_F309_scaffold_9-int 1026 3565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8513531..8513843 /note="source:scaffold_5_CACTA_0584 2869 3175" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8513653..8515142) /note="source:CACAO_hAT_E938_scaffold_2 2356 3840" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(8513910..8515729) /note="source:CACAO_M_E14113_F106_scaffold_3 18605 20431" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8515730..8517176) /note="source:CACAO_M_E43831_F302_scaffold_5 1452 2917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8517179..8519161) /note="source:CACAO_M_E24592_F195_scaffold_4 5 1326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8519162..8522342) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 9000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8522340..8523008 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3822 4455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8522977..8525547) /note="source:INTACT329_F199_scaffold_2-int 3676 6054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8524225..8527284 /note="source:scaffold_3_CACTA_0382 296 3342" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8527403..8528772) /note="source:CACAO_M_E24592_F195_scaffold_4 4 1370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8529360..8530020 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3805 4455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8530022..8530995 /note="source:CACAO_M_E43498_F302_scaffold_5 1484 2464" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8530992..8531309) /note="source:CACAO_M_S_E119615_F3_scaffold_9 15029 15343" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8531298..8531416 /note="source:CACAO_M_E42395_F3_scaffold_5 4654 4773" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8531311..8532229 /note="source:scaffold_4_CACTA_0490 2042 2960" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8532001..8532257 /note="source:CACAO_M_S_E101631_F270_scaffold_9 9177 9487" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8532060..8532258) /note="source:CACAO_M_S_E101631_F270_scaffold_9 6644 6833" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8532264..8533214 /note="source:scaffold_5_CACTA_0591 15659 16631" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8533560..8534112) /note="source:CACAO_M_E43175_F215_scaffold_5 5211 5762" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8545872..8546154 /note="source:INTACT224_F176_scaffold_8-int 12265 13903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8546155..8547532 /note="source:scaffold_4_CACTA_0493 231 1625" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8548700..8549601) /note="source:CACAO_M_S_E90022_F9_scaffold_8 1 897" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8553443..8556007 /locus_tag="TCM_043656" /note="dbxref CacaoGD:Thecc1EG043656" mRNA join(8553443..8553781,8553899..8554125,8554326..8554573, 8554675..8555015,8555173..8556007) /locus_tag="TCM_043656" /product="Cytochrome P450" /inference="alignment:exonerate-protein:2:frave:gene03029" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043636t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02630.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(8553487..8553781,8553899..8554125,8554326..8554573, 8554675..8555015,8555173..8555678) /locus_tag="TCM_043656" /note="paralog of Thecc1EG043636t1" /codon_start=1 /product="Cytochrome P450" /protein_id="EOY19028.1" /db_xref="Phytozome:POPTR_0008s02630.1" /db_xref="TAIR:AT5G24910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL41" /translation="MALLLLLVKITGTSVLMAFIGMLIHLFDSMILNPARLRAKLRKQ GIRGPPPTLLLGNTLDIKKTQSKLSMLPQEGEQVITHNSSSTVFPYFEQWREQHGPTF LFSLGNIQILHVTDPDLVKEIITCTSMDLGNPTYQQKERGPLLGKGILTSNGALWAHQ RKIIAPELYMDKVKGMTTLMADCSVMVVNEWKSKIDGEGGIADIKVDDYLRRFTRDVI SRACFGSNYSQGEEIFFKIRALQEAMSKKVLSNGFPGMRYLPTKSNREIWRLEKEVRA LILKAVYKTKEEKSKEDLLQMILKGAKNSDLGPDATDDFIVDNCKNIYFAGYETTAIT AAWTLLLLALNPDWQDKVRAEVLEICGGKLPDADMILTPSIPELDTYGERQSHVLKMF LNGCQLTMVISETLRLYPPGAIISREALEDMKFGDIHVPKGVNIWLLPATLHQDPEIW GPDADKFNPERFSNGVSGACKFPHVYLPFGFGPHTCLGQHFALAELKLLLALALSNFT FSPSPKYRHCPSLSLIIEPKHGVNLIVRRL" mobile_element complement(8556296..8558923) /note="source:CACAO_M_S_E144962_F231_scaffold_10 1 2628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8561632..8561696) /note="source:CACAO_M_E5326_F22_scaffold_2 3444 3509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8562108..8562192) /note="source:INTACT410F_F357_scaffold_4-int 924 1005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8562127..8562191 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3736 3800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8562296..8562371 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3189 3265" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8562372..8562398 /note="source:scaffold_4_CACTA_0490 3106 3205" /mobile_element_type="transposon:TIR/CACTA" gene complement(8563683..8566601) /locus_tag="TCM_043657" /note="dbxref CacaoGD:Thecc1EG043657" mRNA complement(join(8563683..8564326,8565006..8565104, 8565211..8565251,8565630..8565760,8565921..8566601)) /locus_tag="TCM_043657" /product="Cysteine proteinases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01034716001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc174t3; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc136t11" mRNA complement(join(8563683..8564326,8565006..8565104, 8565211..8565251,8565639..8565760,8565921..8566597)) /locus_tag="TCM_043657" /product="Cysteine proteinases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01034716001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc136t11; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc136t11" CDS complement(join(8564146..8564326,8565006..8565104, 8565211..8565251,8565639..8565760,8565921..8566461)) /locus_tag="TCM_043657" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 1" /protein_id="EOY19029.1" /db_xref="Phytozome:GSVIVT01034716001" /db_xref="TAIR:AT3G57810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL40" /translation="MLGVLCARPPKPWILNSLSLIAHGGLAAHHHDSRLVEWPTHFAD LSADDRRCRHHSTACRLGGSDGGAASIWHAILPCGGGGGGRRRGEVWKNVERKGEGSW NVAWDARPARWLHRPDSAWLLFGVCACLAPMIEFVDVNPDADDKIEGAELNLVSRLSA DEKSSSSSSSVAAADNCKVTGVLADGRCLFRAIAHGACLRSGEDAPDENHQRELADEL RAQVVNELLKRREETEWFIEGDFDAYVKEIQQPYVWGGEPEILMASHVLKTPISVYMI PRSSSNLTKIAKYGEEYQKDKENPINVLFHGYGHYDILESLPEQNCAQVNT" CDS complement(join(8564146..8564326,8565006..8565104, 8565211..8565251,8565630..8565760,8565921..8566461)) /locus_tag="TCM_043657" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 2" /protein_id="EOY19030.1" /db_xref="Phytozome:GSVIVT01034716001" /db_xref="TAIR:AT3G57810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL40" /translation="MLGVLCARPPKPWILNSLSLIAHGGLAAHHHDSRLVEWPTHFAD LSADDRRCRHHSTACRLGGSDGGAASIWHAILPCGGGGGGRRRGEVWKNVERKGEGSW NVAWDARPARWLHRPDSAWLLFGVCACLAPMIEFVDVNPDADDKIEGAELNLVSRLSA DEKSSSSSSSVAAADNCKVTGVLADGRCLFRAIAHGACLRSGEDAPDENHQRELADEL RAQVSLVVNELLKRREETEWFIEGDFDAYVKEIQQPYVWGGEPEILMASHVLKTPISV YMIPRSSSNLTKIAKYGEEYQKDKENPINVLFHGYGHYDILESLPEQNCAQVNT" mRNA complement(join(8565076..8565251,8565639..8565760, 8565921..8566601)) /locus_tag="TCM_043657" /product="Cysteine proteinases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01034716001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc174t6; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc136t11" mRNA complement(join(8565080..8565104,8565639..8565760, 8565921..8566597)) /locus_tag="TCM_043657" /product="Cysteine proteinases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01034716001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc136t5; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc136t11" CDS complement(join(8565096..8565104,8565639..8565760, 8565921..8566461)) /locus_tag="TCM_043657" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 4" /protein_id="EOY19032.1" /db_xref="Phytozome:GSVIVT01034716001" /translation="MLGVLCARPPKPWILNSLSLIAHGGLAAHHHDSRLVEWPTHFAD LSADDRRCRHHSTACRLGGSDGGAASIWHAILPCGGGGGGRRRGEVWKNVERKGEGSW NVAWDARPARWLHRPDSAWLLFGVCACLAPMIEFVDVNPDADDKIEGAELNLVSRLSA DEKSSSSSSSVAAADNCKVTGVLADGRCLFRAIAHGACLRSGEDAPDENHQRELADEL RAQVY" CDS complement(join(8565207..8565251,8565639..8565760, 8565921..8566461)) /locus_tag="TCM_043657" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 3" /protein_id="EOY19031.1" /db_xref="Phytozome:GSVIVT01034716001" /translation="MLGVLCARPPKPWILNSLSLIAHGGLAAHHHDSRLVEWPTHFAD LSADDRRCRHHSTACRLGGSDGGAASIWHAILPCGGGGGGRRRGEVWKNVERKGEGSW NVAWDARPARWLHRPDSAWLLFGVCACLAPMIEFVDVNPDADDKIEGAELNLVSRLSA DEKSSSSSSSVAAADNCKVTGVLADGRCLFRAIAHGACLRSGEDAPDENHQRELADEL RAQVVNELLKRREETEW" gene 8566774..8568409 /locus_tag="TCM_043659" /note="dbxref CacaoGD:Thecc1EG043659" mRNA join(8566774..8566949,8568209..8568409) /locus_tag="TCM_043659" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1914t1" CDS join(8566793..8566949,8568209..8568261) /locus_tag="TCM_043659" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19033.1" /translation="MARAGQIKILGSRVRWKVGDITFYWYSREGVARFQWNRTLFGGC VGAGETSSAQEGSNAFVGEHWNHME" mobile_element complement(8568007..8571021) /note="source:scaffold_10_CACTA_0138 1 3015" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8571642..8573848) /note="source:CACAO_M_E85026_F215_scaffold_10 22 2252" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8573496..8579775 /locus_tag="TCM_043661" /note="dbxref CacaoGD:Thecc1EG043661" mRNA join(8573496..8573546,8576499..8576691,8578776..8579775) /locus_tag="TCM_043661" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage" CDS join(8576506..8576691,8578776..8578979) /locus_tag="TCM_043661" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19034.1" /translation="MSPRIRASTRGAVEANAPTEIMGRPCMPIARGRGICDRVEMLIS AHVEGQPPMADVESLVKGLEGVAIPMVLFTINGFSTKQVSFTWEASSVVTILMIAHDN VKAMGNYVRHKYTPMSLDKCGKYVIQC" mobile_element 8579105..8579139 /note="source:CACAO_M_S_E4863_F51_scaffold_1 2432 2466" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8582883..8587574) /locus_tag="TCM_043662" /note="dbxref CacaoGD:Thecc1EG043662" mRNA complement(join(8582883..8583823,8584671..8584785, 8585366..8585821,8585906..8586138,8586222..8586270, 8586656..8586976,8587136..8587574)) /locus_tag="TCM_043662" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete; weak similarity to F21E10.5 protein" CDS complement(join(8583501..8583823,8584671..8584785, 8585366..8585821,8585906..8586138,8586222..8586270, 8586656..8586976,8587136..8587465)) /locus_tag="TCM_043662" /note="weak similarity to F21E10.5 protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19035.1" /translation="MATGRLPDPLISSLQIGSSPSLQPRPMHLTAEAKSHASLVNNDG SQAFDLQNQPPTSLRFQRKSFLSIAKGEKPPMIPLNQDPVVYKDQPAAAFFEDEIRTL VEPFNLCLHWFIANQKMWVFKWYPDFEAEKESLVVPVWISFSNLKAHLYKKLALLLIA KTIGKPLFVNKAIAKGSRPNVARVCVEYDCKKPLTDPVWIVIQNRDTSMVTSSYSQKG RKNECKISSKNRGKQIEFNVKEDGRGMGNEVLHDNEEQPVALEKVATLTTKPTGSDGV LQESLNVHREWSLSKKGIDEKETVFSELVGLETFHKKKKKLVVRSLESTVNGDGPNRS DGQRMVMVSTSLSDDLVEGSEENMPLVDEEMNQLGRSKALSSYGFLLFGIVHNDEGSK QGEDDKLETEHSGGNILAASTTTCIRESMQGRYANRSNSDRGMGKYLFNKELSDIPSH EGMCYGELEVHPLVIWVEPHDGAMEDFATALLDYDLIDGGFQGYLFTWINNRAALPKG ITSATLVLLPKNNHASKWSEYRPISLCNVLNKIITKILAIRLTKVLPSIILGNQSGFV GGRLINDNILLAQELIGKIDKKARGGNVVLKLDMMKAYDQLD" mobile_element 8591015..8592429 /note="source:scaffold_8_CACTA_0859 16514 17933" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8597457..8600500 /note="source:INTACT558_F9_scaffold_9-int 2 3078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8600501..8603333) /note="source:CACAO_M_E84745_F15_scaffold_10 1 2825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8603334..8603738 /note="source:INTACT558_F9_scaffold_9-int 3082 3486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8603737..8604603 /note="source:scaffold_5_CACTA_0591 10062 10909" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8605463..8606410) /note="source:INTACT146F_F14_scaffold_2-int 3173 4132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8607464..8608422 /note="source:INTACT558_F9_scaffold_9-int 487 1450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8608394..8609398 /note="source:scaffold_8_CACTA_0859 16909 17937" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8618165..8621002) /note="source:CACAO_M_E84739_F289_scaffold_10 1 2838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8620925..8621015 /note="source:CACAO_M_E52239_F256_scaffold_7 6362 6447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8628167..8628670 /note="source:CACAO_M_E58324_F9_scaffold_9 8578 9061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8628474..8628692 /note="source:scaffold_2_CACTA_0262 16862 17089" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8628525..8628696) /note="source:scaffold_5_CACTA_0591 14274 14452" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8628657..8628702) /note="source:CACAO_M_S_E14849_F156_scaffold_2 712 757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8628803..8629425) /note="source:INTACT143_F152_scaffold_7-int 5319 5966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8630721..8631925 /note="source:scaffold_4_CACTA_0493 4079 5253" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8637391..8640951 /note="source:CACAO_M_S_E64440_F7_scaffold_5 1 3598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8640952..8644090) /note="source:CACAO_M_S_E144953_F7_scaffold_10 1 3139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8644092..8647824) /note="source:INTACT476_F7_scaffold_4-int 2847 6780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8644383..8647340 /note="source:CACAO_M_S_E64440_F7_scaffold_5 13773 16728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8647826..8649622 /note="source:CACAO_M_E35778_F7_scaffold_5 1144 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8650042..8651812 /note="source:CACAO_M_E35811_F12_scaffold_5 12964 14717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8651813..8654566) /note="source:CACAO_M_S_E144950_F15_scaffold_10 1 2754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8658363..8658438 /note="source:INTACT280_F60_scaffold_5-int 13878 13954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8659945..8662940) /note="source:CACAO_M_E23109_F230_scaffold_4 1 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8665944..8670816 /note="source:INTACT500_F9_scaffold_13-int 1 4864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8670815..8680876) /note="source:INTACT131_F13_scaffold_10-int 1 10062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8680877..8681654 /note="source:INTACT500_F9_scaffold_13-int 4858 5632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8681644..8681966 /note="source:CACAO_M_E11098_F15_scaffold_2 7370 7691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8683198..8686067) /note="source:CACAO_M_E84735_F230_scaffold_10 1 2870" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8690799..8691789 /locus_tag="TCM_043669" /note="dbxref CacaoGD:Thecc1EG043669" mRNA 8690799..8691789 /locus_tag="TCM_043669" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS 8691043..8691261 /locus_tag="TCM_043669" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19036.1" /translation="MFITFLISEQIKVKITFKTDKPSQHWENKAAVLVKGSSPYNFLE SSVLQSWRSSSKNKNLMRFWKLGYFKPI" mobile_element 8696492..8696607 /note="source:CACAO_M_E35511_F5_scaffold_5 285 394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8698530..8698618 /note="source:INTACT651_F88_scaffold_2-int 7979 8067" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8706339..8709424) /note="source:CACAO_M_E84727_F42_scaffold_10 1 3086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8709425..8709494) /note="source:CACAO_M_E35511_F5_scaffold_5 16259 16310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8717076..8718078) /note="source:INTACT44_F119_scaffold_6-int 7947 8950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8718076..8723512) /note="source:INTACT44_F119_scaffold_6-int 1112 6584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8723575..8724003) /note="source:INTACT44_F119_scaffold_6-int 673 1107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8724082..8724945) /note="source:INTACT44_F119_scaffold_6-int 8086 8950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8729480..8729532 /note="source:CACAO_M_E57469_F369_scaffold_9 1251 1303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8729635..8729699 /note="source:CACAO_M_E5326_F22_scaffold_2 3438 3497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8729787..8730029) /note="source:CACAO_M_E57385_F197_scaffold_9 7851 8124" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8730027..8730188) /note="source:CACAO_M_E57385_F197_scaffold_9 1244 1396" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8731172..8731549) /note="source:CACAO_M_E57385_F197_scaffold_9 139 565" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8734736..8735848) /note="source:CACAO_M_E5326_F22_scaffold_2 24566 25637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8739069..8739533 /note="source:CACAO_M_S_E18399_F231_scaffold_3 1 465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8739527..8748243 /note="source:CACAO_M_S_E18399_F231_scaffold_3 1223 10562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8749230..8752123) /note="source:CACAO_M_E14113_F106_scaffold_3 7637 10512" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8752868..8752940 /note="source:CACAO_M_E42395_F3_scaffold_5 1408 1480" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8753833..8756667) /note="source:CACAO_M_E84716_F15_scaffold_10 1 2835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8758284..8761270) /note="source:CACAO_M_E84715_F288_scaffold_10 1 2987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8763128..8763389 /note="source:CACAO_on_S_E390_scaffold_9 15126 15391" /mobile_element_type="transposon:TIR/Mutator" mobile_element 8763159..8765955 /note="source:INTACT669_F295_scaffold_3-int 6628 9443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8766165..8766452) /note="source:scaffold_4_CACTA_0493 1912 2166" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8766416..8767740) /note="source:CACAO_M_E3780_F76_scaffold_1 7069 8429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8767710..8769256) /note="source:CACAO_M_E3780_F76_scaffold_1 2508 4141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8769257..8772033 /note="source:CACAO_M_E11488_F17_scaffold_2 1 2824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8772034..8772377) /note="source:INTACT901F_F95_scaffold_6-int 12209 12552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8774484..8774909) /note="source:CACAO_M_S_E52339_F15_scaffold_5 8148 8574" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8774739..8784406 /locus_tag="TCM_043679" /note="dbxref CacaoGD:Thecc1EG043679" mRNA join(8774739..8774776,8782845..8783971,8784384..8784406) /locus_tag="TCM_043679" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009608t1" /inference="similar to AA sequence:ricco:29674.m000206" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" mobile_element complement(8777223..8777729) /note="source:CACAO_M_E86338_F15_scaffold_15 5414 5922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8779925..8780377) /note="source:CACAO_M_E294_F134_scaffold_1 9611 10062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8780478..8780698) /note="source:CACAO_M_E86338_F15_scaffold_15 2387 2607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8782855..8782962) /note="source:CACAO_M_E294_F134_scaffold_1 7992 8100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8782941..8784556 /note="source:CACAO_M_E11488_F17_scaffold_2 2837 4454" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 8783186..8783956 /locus_tag="TCM_043679" /note="dbxref ricco:29674.m000206; paralog of Thecc1EG009608t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19037.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SL44" /translation="MGKKLKKMLKKKLWLKNLLKIQKKNHNLPPHLHHIFLNVFKSKN VQTIPKFLEVFKKLHINIPFAEALEQMPSYLKFLKEILTKKRKLEEFETVALIEECSA IIQNKLPPKLKDPGSFSIPCTIGSFKISKALCDLGASVSIMPLSIARKLGFQEIQPTT VTLQLADRTIRHPNGIIEDVLLKVGHLYIPVDFIVLEIEDDVEIPLILGRPFLATARA LIDVKNGKITFRVERRKWYLICSMQLNIPIQIVAINWI" mobile_element complement(8784390..8786182) /note="source:CACAO_M_E71671_F17_scaffold_10 1795 3507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8786179..8786389) /note="source:CACAO_M_E71671_F17_scaffold_10 912 1119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8786390..8789120 /note="source:CACAO_M_E3617_F79_scaffold_1 1 2757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8789122..8789992) /note="source:CACAO_M_E71671_F17_scaffold_10 9375 10288" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8789987..8790159) /note="source:CACAO_M_E3780_F76_scaffold_1 2344 2517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8790260..8790579) /note="source:INTACT189_F49_scaffold_5-int 19301 19620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8791130..8791192) /note="source:CACAO_M_S_E85177_F5_scaffold_7 163 225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8791434..8791648) /note="source:INTACT189_F49_scaffold_5-int 18356 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8791648..8792045) /note="source:INTACT189_F49_scaffold_5-int 17859 18253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8792040..8792534) /note="source:CACAO_M_E3780_F76_scaffold_1 1856 2350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8793013..8793713) /note="source:CACAO_M_E69760_F9_scaffold_9 8697 9395" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 8793714..8803713 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(8803714..8803966) /note="source:scaffold_4_CACTA_0493 2001 2277" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8803981..8817789) /note="source:CACAO_M_S_E144909_F278_scaffold_10 1 13809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8817842..8818057) /note="source:INTACT298_F14_scaffold_10-int 6078 6279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8818058..8820991 /note="source:CACAO_M_S_E109813_F172_scaffold_9 1 2943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8821752..8821814 /note="source:INTACT415F_F22_scaffold_4-int 2191 2252" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8824027..8824182 /note="source:scaffold_5_CACTA_0610 5153 5317" /mobile_element_type="transposon:TIR/CACTA" gene 8825397..8840507 /locus_tag="TCM_043681" /note="dbxref CacaoGD:Thecc1EG043681" mRNA join(8825397..8825570,8826003..8826814,8827276..8829381, 8829502..8829861,8830692..8830782,8830877..8832278, 8832394..8832473,8832633..8832717,8832808..8832899, 8832973..8833041,8833133..8833169,8833281..8833363, 8835321..8835755,8836159..8836195,8836280..8836337, 8836596..8836735,8836830..8836895,8837114..8837228, 8837326..8838205) /locus_tag="TCM_043681" /product="DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G04560.2" /inference="similar to AA sequence:ricco:29428.m000327" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3827t1" mRNA join(8825439..8825570,8826003..8826814,8827336..8829381, 8829502..8829861,8830692..8830782,8830877..8832278, 8832394..8832473,8832633..8832717,8832808..8832899, 8832973..8833041,8833133..8833169,8833281..8833363, 8835321..8835755,8836159..8836195,8836280..8836337, 8836596..8836735,8836830..8836895,8837114..8837228, 8837326..8837364,8839901..8840507) /locus_tag="TCM_043681" /product="DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5" /inference="alignment:exonerate- protein:2:TAIR:AT5G04560.2" /inference="similar to AA sequence:Phytozome:POPTR_0010s24060.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b042151t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3827t1" mRNA join(8825439..8825570,8826003..8826814,8827276..8829381, 8829502..8829861,8830692..8830782,8830877..8832278, 8832394..8832473,8832633..8832717,8832808..8832899, 8832973..8833041,8833133..8833169,8833281..8833363, 8835321..8835755,8836159..8836195,8836280..8836337, 8836596..8836735,8836830..8836897,8837114..8837229, 8837326..8837364,8839901..8840447) /locus_tag="TCM_043681" /product="DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G04560.2" /inference="similar to AA sequence:Phytozome:POPTR_0010s24060.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3827t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3827t1" mRNA join(8825474..8825570,8826003..8826814,8827333..8829381, 8829502..8829861,8830692..8830782,8830877..8832278, 8832394..8832473,8832633..8832717,8832808..8832899, 8832973..8833041,8833133..8833169,8833281..8833363, 8835321..8835755,8836159..8836195,8836280..8836337, 8836596..8836735,8836830..8836895,8837114..8837228, 8837326..8837364,8839901..8840507) /locus_tag="TCM_043681" /product="DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT5G04560.2" /inference="similar to AA sequence:Phytozome:POPTR_0010s24060.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc171t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3827t1" mRNA join(8825543..8825570,8826003..8826814,8827276..8829381, 8829502..8829861,8830692..8830782,8830877..8832278, 8832394..8832473,8832633..8832717,8832951..>8833002) /locus_tag="TCM_043681" /product="DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 6" /inference="alignment:exonerate- protein:2:TAIR:AT5G04560.2" /inference="similar to AA sequence:Phytozome:POPTR_0010s24060.1" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc172t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3827t1" mRNA join(8825594..8825767,8826003..8826814,8827333..8829381, 8829502..8829861,8830692..8830782,8830877..8832278, 8832394..8832473,8832633..8832717,8832808..8832899, 8832973..8833041,8833133..8833169,8833281..8833363, 8835321..8835755,8836159..8836195,8836280..8836337, 8836596..8836735,8836830..8836895,8837114..8837228, 8837326..8837364,8839901..8840507) /locus_tag="TCM_043681" /product="DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT5G04560.2" /inference="similar to AA sequence:Phytozome:POPTR_0010s24060.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc171t20; alternateUTRof:Thecc1EG043681t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3827t1" CDS join(8826229..8826814,8827276..8829381,8829502..8829861, 8830692..8830782,8830877..8832278,8832394..8832473, 8832633..8832717,8832808..8832899,8832973..8833041, 8833133..8833169,8833281..8833363,8835321..8835755, 8836159..8836195,8836280..8836337,8836596..8836735, 8836830..8836897,8837114..8837229,8837326..8837364, 8839901..8840016) /locus_tag="TCM_043681" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 2" /protein_id="EOY19039.1" /db_xref="Phytozome:POPTR_0010s24060.1" /db_xref="TAIR:AT5G04560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6KFZ1" /translation="MNFGEEFSIPQGNEFQFTGSWIPVTPQKPIATISNPIPVNGQGN QFGRGNWQELAGFSTGYVQDILNYNGIGQNFNPIEQMCQSRVDYVGSINSAENRMINN IAGPYTQVLQNESTGWNNNTLANLPATRNATAFAPANGTASIRRENAVPIPIMHSQAD NWRHSSSHNSMCTNQTHSTSLHFLRNIDRFYQMPQHDFPVPYKPMYNLNSPPRTEVDA AFHITTSFQSTPAAQDQTKIMGNKQLSTVPASASDESSIHEKGKQENLITYNANEVSQ HNCELLQNIVDSSSAVISTPVEEKRDSERGSEQGIDLNKTPQQKPPKRRKHRPKVIVE GKPKRNPKPATTKNINSKENPSGKRKYVRRKGLTESATEQADSTKKSDPTAATPAKRR YVRKKSLKESANEQIDSMKEFDPSAGTTVKGKYTEKKNQKESSTEKADCTRGSDPSAG TAGKRKYVRRNGLRASTGQQVQETDPSAVPVAKSCRRVLNFDLENTGNESQAAIFNRQ EMQEGRKSSESQAVGLWNTENSGFKTTLTTQSSQQMVLENCQPQTEISHTPSLSKMML IDYISMPGMPADTASQFQAKDLQMESRNVNARHVNMDNADLSQKSYSNGYSPTQQYIN PKGMDQSVSQRTSNWENIDGTNELILERCPKSVPTVLSNSSEGMGSKRDHSQAIEQGQ LYTASSLSSLLLQGVFQMNEGYRNGSTNGAGFLQALKRKKIEDESQAYIYGMKYGMSY SSGQLQTKGTNSEFTSLRDCGTSDPQFLQSDNIARRKSGGVSELTGDTNVHSTAAGPT SSKKHISSQLHSGMETLINTNGLTLAHNLATIENFDNLLPTTPKNAPTLQLGSVTKAS HTNVSEKKKREPDLSRRAPSGRGKKLQEQKELYEYQQSSKAGPSAKQIYPIPIEEIIN KFMGLTLDERNNEAKSEVQNALVIYKGAGTVVPYEGFEFIKKRKPRPKVDLDPETNRV WNLLMGKEGEDIEGTDKEKEKWWEEERRVFHGRVDSFIARMHLVQGDRRFSKWKGSVV DSVIGVFLTQNVSDHLSSSAFMSLAARFPFKSSCKRECDGDGVKILIEEPEFCEPNPN ETIKWHEKLFSHPLDRQSPMTSIMSTDYRRNGENPGIERTSFTETHSQSLEEEVLSSQ GSFDSSVIQANGVIRSYSGSNSETEDPTTCCKFNNFHGSSVDQMENSASFEEFCNSVN GSSPFHEGLKYKQSEVTENAQKSRLERKENLRGPSSFIQASHFRNQQVQVQAVGVSNH PLHMTLEFEAREREGLEPCGEECMSSWASTASGLNKLKQLGQSEDKITVHQNEQAISQ DMATTTLNTLSRKHITHQDTVSQPGAHTKSNQLCNNHQEMRNKAFQSESASVTMPLTT DAVNKMHKSTLLYAANALKLTERPSDVEKMSALNRDKDIENREVQSNTKEQIHSSEKE NGAYSFLKSKRRKAEGEKNNATDWDALRKLVQANGWKKERSKDTMDSLDYKAMRHANV NEISNAIKERGMNNMLAERIKEFLNRLVREHESIDLEWLREVPPDKAKDYLLSIRGLG LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLA LPGPEEKSITSSTVPMMSERNPVKVLNPMPLPPPEHNLLHVGPNNGSHEPIIEEPTTP EPEHTEESQSDIEDACYEDPDEIPTIKLNIEEFTANLQHYMQEKMELQESDLSKALVA LNPEAASIPTPKLKNVSRLRTEHYVYELPDDHPLLEEMEKREADDPSPYLLAIWTPGE TANTIQPPEQSCGSQEPGRLCNEKTCFACNSVREANAQTVRGTLLIPCRTAMRGSFPL NGTYFQVNEVSLQIMNQASTRWMSQGNGYGIYPDELCTSEHLYQQFSKGLSTEEIQYC FWKGFVCVRGFDQKTRAPRPLMARLHFPASKLAKTQNKSKR" CDS join(8826229..8826814,8827333..8829381,8829502..8829861, 8830692..8830782,8830877..8832278,8832394..8832473, 8832633..8832717,8832808..8832899,8832973..8833041, 8833133..8833169,8833281..8833363,8835321..8835755, 8836159..8836195,8836280..8836337,8836596..8836735, 8836830..8836895,8837114..8837228,8837326..8837364, 8839901..8840016) /locus_tag="TCM_043681" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 3" /protein_id="EOY19040.1" /db_xref="Phytozome:POPTR_0010s24060.1" /translation="MNFGEEFSIPQGNEFQFTGSWIPVTPQKPIATISNPIPVNGQGN QFGRGNWQELAGFSTGYVQDILNYNGIGQNFNPIEQMCQSRVDYVGSINSAENRMINN IAGPYTQVLQNESTGWNNNTLANLPATRNATAFAPANGTASIRRENAVPIPIMHSQAD NWRHSSSHNSMCTNQTHSTSLHFLRNIDRFYQMPQQVDAAFHITTSFQSTPAAQDQTK IMGNKQLSTVPASASDESSIHEKGKQENLITYNANEVSQHNCELLQNIVDSSSAVIST PVEEKRDSERGSEQGIDLNKTPQQKPPKRRKHRPKVIVEGKPKRNPKPATTKNINSKE NPSGKRKYVRRKGLTESATEQADSTKKSDPTAATPAKRRYVRKKSLKESANEQIDSMK EFDPSAGTTVKGKYTEKKNQKESSTEKADCTRGSDPSAGTAGKRKYVRRNGLRASTGQ QVQETDPSAVPVAKSCRRVLNFDLENTGNESQAAIFNRQEMQEGRKSSESQAVGLWNT ENSGFKTTLTTQSSQQMVLENCQPQTEISHTPSLSKMMLIDYISMPGMPADTASQFQA KDLQMESRNVNARHVNMDNADLSQKSYSNGYSPTQQYINPKGMDQSVSQRTSNWENID GTNELILERCPKSVPTVLSNSSEGMGSKRDHSQAIEQGQLYTASSLSSLLLQGVFQMN EGYRNGSTNGAGFLQALKRKKIEDESQAYIYGMKYGMSYSSGQLQTKGTNSEFTSLRD CGTSDPQFLQSDNIARRKSGGVSELTGDTNVHSTAAGPTSSKKHISSQLHSGMETLIN TNGLTLAHNLATIENFDNLLPTTPKNAPTLQLGSVTKASHTNVSEKKKREPDLSRRAP SGRGKKLQEQKELYEYQQSSKAGPSAKQIYPIPIEEIINKFMGLTLDERNNEAKSEVQ NALVIYKGAGTVVPYEGFEFIKKRKPRPKVDLDPETNRVWNLLMGKEGEDIEGTDKEK EKWWEEERRVFHGRVDSFIARMHLVQGDRRFSKWKGSVVDSVIGVFLTQNVSDHLSSS AFMSLAARFPFKSSCKRECDGDGVKILIEEPEFCEPNPNETIKWHEKLFSHPLDRQSP MTSIMSTDYRRNGENPGIERTSFTETHSQSLEEEVLSSQGSFDSSVIQANGVIRSYSG SNSETEDPTTCCKFNNFHGSSVDQMENSASFEEFCNSVNGSSPFHEGLKYKQSEVTEN AQKSRLERKENLRGPSSFIQASHFRNQQVQVQAVGVSNHPLHMTLEFEAREREGLEPC GEECMSSWASTASGLNKLKQLGQSEDKITVHQNEQAISQDMATTTLNTLSRKHITHQD TVSQPGAHTKSNQLCNNHQEMRNKAFQSESASVTMPLTTDAVNKMHKSTLLYAANALK LTERPSDVEKMSALNRDKDIENREVQSNTKEQIHSSEKENGAYSFLKSKRRKAEGEKN NATDWDALRKLVQANGWKKERSKDTMDSLDYKAMRHANVNEISNAIKERGMNNMLAER IKEFLNRLVREHESIDLEWLREVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPV DTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHY QMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSITSSTVPMMSE RNPVKVLNPMPLPPPEHNLLHVGPNNGSHEPIIEEPTTPEPEHTEESQSDIEDACYED PDEIPTIKLNIEEFTANLQHYMQEKMELQESDLSKALVALNPEAASIPTPKLKNVSRL RTEHYVYELPDDHPLLEEMEKREADDPSPYLLAIWTPGETANTIQPPEQSCGSQEPGR LCNEKTCFACNSVREANAQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHESSLN PMDVPREWLWNLPRRTVYFGTSVSTIFKGLSTEEIQYCFWKGFVCVRGFDQKTRAPRP LMARLHFPASKLAKTQNKSKR" CDS join(8826229..8826814,8827333..8829381,8829502..8829861, 8830692..8830782,8830877..8832278,8832394..8832473, 8832633..8832717,8832808..8832899,8832973..8833041, 8833133..8833169,8833281..8833363,8835321..8835755, 8836159..8836195,8836280..8836337,8836596..8836735, 8836830..8836895,8837114..8837228,8837326..8837364, 8839901..8840016) /locus_tag="TCM_043681" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 3" /protein_id="EOY19041.1" /db_xref="Phytozome:POPTR_0010s24060.1" /translation="MNFGEEFSIPQGNEFQFTGSWIPVTPQKPIATISNPIPVNGQGN QFGRGNWQELAGFSTGYVQDILNYNGIGQNFNPIEQMCQSRVDYVGSINSAENRMINN IAGPYTQVLQNESTGWNNNTLANLPATRNATAFAPANGTASIRRENAVPIPIMHSQAD NWRHSSSHNSMCTNQTHSTSLHFLRNIDRFYQMPQQVDAAFHITTSFQSTPAAQDQTK IMGNKQLSTVPASASDESSIHEKGKQENLITYNANEVSQHNCELLQNIVDSSSAVIST PVEEKRDSERGSEQGIDLNKTPQQKPPKRRKHRPKVIVEGKPKRNPKPATTKNINSKE NPSGKRKYVRRKGLTESATEQADSTKKSDPTAATPAKRRYVRKKSLKESANEQIDSMK EFDPSAGTTVKGKYTEKKNQKESSTEKADCTRGSDPSAGTAGKRKYVRRNGLRASTGQ QVQETDPSAVPVAKSCRRVLNFDLENTGNESQAAIFNRQEMQEGRKSSESQAVGLWNT ENSGFKTTLTTQSSQQMVLENCQPQTEISHTPSLSKMMLIDYISMPGMPADTASQFQA KDLQMESRNVNARHVNMDNADLSQKSYSNGYSPTQQYINPKGMDQSVSQRTSNWENID GTNELILERCPKSVPTVLSNSSEGMGSKRDHSQAIEQGQLYTASSLSSLLLQGVFQMN EGYRNGSTNGAGFLQALKRKKIEDESQAYIYGMKYGMSYSSGQLQTKGTNSEFTSLRD CGTSDPQFLQSDNIARRKSGGVSELTGDTNVHSTAAGPTSSKKHISSQLHSGMETLIN TNGLTLAHNLATIENFDNLLPTTPKNAPTLQLGSVTKASHTNVSEKKKREPDLSRRAP SGRGKKLQEQKELYEYQQSSKAGPSAKQIYPIPIEEIINKFMGLTLDERNNEAKSEVQ NALVIYKGAGTVVPYEGFEFIKKRKPRPKVDLDPETNRVWNLLMGKEGEDIEGTDKEK EKWWEEERRVFHGRVDSFIARMHLVQGDRRFSKWKGSVVDSVIGVFLTQNVSDHLSSS AFMSLAARFPFKSSCKRECDGDGVKILIEEPEFCEPNPNETIKWHEKLFSHPLDRQSP MTSIMSTDYRRNGENPGIERTSFTETHSQSLEEEVLSSQGSFDSSVIQANGVIRSYSG SNSETEDPTTCCKFNNFHGSSVDQMENSASFEEFCNSVNGSSPFHEGLKYKQSEVTEN AQKSRLERKENLRGPSSFIQASHFRNQQVQVQAVGVSNHPLHMTLEFEAREREGLEPC GEECMSSWASTASGLNKLKQLGQSEDKITVHQNEQAISQDMATTTLNTLSRKHITHQD TVSQPGAHTKSNQLCNNHQEMRNKAFQSESASVTMPLTTDAVNKMHKSTLLYAANALK LTERPSDVEKMSALNRDKDIENREVQSNTKEQIHSSEKENGAYSFLKSKRRKAEGEKN NATDWDALRKLVQANGWKKERSKDTMDSLDYKAMRHANVNEISNAIKERGMNNMLAER IKEFLNRLVREHESIDLEWLREVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPV DTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHY QMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSITSSTVPMMSE RNPVKVLNPMPLPPPEHNLLHVGPNNGSHEPIIEEPTTPEPEHTEESQSDIEDACYED PDEIPTIKLNIEEFTANLQHYMQEKMELQESDLSKALVALNPEAASIPTPKLKNVSRL RTEHYVYELPDDHPLLEEMEKREADDPSPYLLAIWTPGETANTIQPPEQSCGSQEPGR LCNEKTCFACNSVREANAQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHESSLN PMDVPREWLWNLPRRTVYFGTSVSTIFKGLSTEEIQYCFWKGFVCVRGFDQKTRAPRP LMARLHFPASKLAKTQNKSKR" CDS join(8826229..8826814,8827336..8829381,8829502..8829861, 8830692..8830782,8830877..8832278,8832394..8832473, 8832633..8832717,8832808..8832899,8832973..8833041, 8833133..8833169,8833281..8833363,8835321..8835755, 8836159..8836195,8836280..8836337,8836596..8836735, 8836830..8836895,8837114..8837228,8837326..8837364, 8839901..8840016) /locus_tag="TCM_043681" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5" /protein_id="EOY19042.1" /db_xref="Phytozome:POPTR_0010s24060.1" /translation="MNFGEEFSIPQGNEFQFTGSWIPVTPQKPIATISNPIPVNGQGN QFGRGNWQELAGFSTGYVQDILNYNGIGQNFNPIEQMCQSRVDYVGSINSAENRMINN IAGPYTQVLQNESTGWNNNTLANLPATRNATAFAPANGTASIRRENAVPIPIMHSQAD NWRHSSSHNSMCTNQTHSTSLHFLRNIDRFYQMPQLDAAFHITTSFQSTPAAQDQTKI MGNKQLSTVPASASDESSIHEKGKQENLITYNANEVSQHNCELLQNIVDSSSAVISTP VEEKRDSERGSEQGIDLNKTPQQKPPKRRKHRPKVIVEGKPKRNPKPATTKNINSKEN PSGKRKYVRRKGLTESATEQADSTKKSDPTAATPAKRRYVRKKSLKESANEQIDSMKE FDPSAGTTVKGKYTEKKNQKESSTEKADCTRGSDPSAGTAGKRKYVRRNGLRASTGQQ VQETDPSAVPVAKSCRRVLNFDLENTGNESQAAIFNRQEMQEGRKSSESQAVGLWNTE NSGFKTTLTTQSSQQMVLENCQPQTEISHTPSLSKMMLIDYISMPGMPADTASQFQAK DLQMESRNVNARHVNMDNADLSQKSYSNGYSPTQQYINPKGMDQSVSQRTSNWENIDG TNELILERCPKSVPTVLSNSSEGMGSKRDHSQAIEQGQLYTASSLSSLLLQGVFQMNE GYRNGSTNGAGFLQALKRKKIEDESQAYIYGMKYGMSYSSGQLQTKGTNSEFTSLRDC GTSDPQFLQSDNIARRKSGGVSELTGDTNVHSTAAGPTSSKKHISSQLHSGMETLINT NGLTLAHNLATIENFDNLLPTTPKNAPTLQLGSVTKASHTNVSEKKKREPDLSRRAPS GRGKKLQEQKELYEYQQSSKAGPSAKQIYPIPIEEIINKFMGLTLDERNNEAKSEVQN ALVIYKGAGTVVPYEGFEFIKKRKPRPKVDLDPETNRVWNLLMGKEGEDIEGTDKEKE KWWEEERRVFHGRVDSFIARMHLVQGDRRFSKWKGSVVDSVIGVFLTQNVSDHLSSSA FMSLAARFPFKSSCKRECDGDGVKILIEEPEFCEPNPNETIKWHEKLFSHPLDRQSPM TSIMSTDYRRNGENPGIERTSFTETHSQSLEEEVLSSQGSFDSSVIQANGVIRSYSGS NSETEDPTTCCKFNNFHGSSVDQMENSASFEEFCNSVNGSSPFHEGLKYKQSEVTENA QKSRLERKENLRGPSSFIQASHFRNQQVQVQAVGVSNHPLHMTLEFEAREREGLEPCG EECMSSWASTASGLNKLKQLGQSEDKITVHQNEQAISQDMATTTLNTLSRKHITHQDT VSQPGAHTKSNQLCNNHQEMRNKAFQSESASVTMPLTTDAVNKMHKSTLLYAANALKL TERPSDVEKMSALNRDKDIENREVQSNTKEQIHSSEKENGAYSFLKSKRRKAEGEKNN ATDWDALRKLVQANGWKKERSKDTMDSLDYKAMRHANVNEISNAIKERGMNNMLAERI KEFLNRLVREHESIDLEWLREVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVD TNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQ MITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSITSSTVPMMSER NPVKVLNPMPLPPPEHNLLHVGPNNGSHEPIIEEPTTPEPEHTEESQSDIEDACYEDP DEIPTIKLNIEEFTANLQHYMQEKMELQESDLSKALVALNPEAASIPTPKLKNVSRLR TEHYVYELPDDHPLLEEMEKREADDPSPYLLAIWTPGETANTIQPPEQSCGSQEPGRL CNEKTCFACNSVREANAQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHESSLNP MDVPREWLWNLPRRTVYFGTSVSTIFKGLSTEEIQYCFWKGFVCVRGFDQKTRAPRPL MARLHFPASKLAKTQNKSKR" CDS join(8826229..8826814,8827276..8829381,8829502..8829861, 8830692..8830782,8830877..8832278,8832394..8832473, 8832633..8832717,8832808..8832899,8832973..8833041, 8833133..8833169,8833281..8833363,8835321..8835755, 8836159..8836195,8836280..8836337,8836596..8836735, 8836830..8836895,8837114..8837228,8837326..8837384) /locus_tag="TCM_043681" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29428.m000327" /codon_start=1 /product="DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 1" /protein_id="EOY19038.1" /db_xref="TAIR:AT5G04560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6KFZ1" /translation="MNFGEEFSIPQGNEFQFTGSWIPVTPQKPIATISNPIPVNGQGN QFGRGNWQELAGFSTGYVQDILNYNGIGQNFNPIEQMCQSRVDYVGSINSAENRMINN IAGPYTQVLQNESTGWNNNTLANLPATRNATAFAPANGTASIRRENAVPIPIMHSQAD NWRHSSSHNSMCTNQTHSTSLHFLRNIDRFYQMPQHDFPVPYKPMYNLNSPPRTEVDA AFHITTSFQSTPAAQDQTKIMGNKQLSTVPASASDESSIHEKGKQENLITYNANEVSQ HNCELLQNIVDSSSAVISTPVEEKRDSERGSEQGIDLNKTPQQKPPKRRKHRPKVIVE GKPKRNPKPATTKNINSKENPSGKRKYVRRKGLTESATEQADSTKKSDPTAATPAKRR YVRKKSLKESANEQIDSMKEFDPSAGTTVKGKYTEKKNQKESSTEKADCTRGSDPSAG TAGKRKYVRRNGLRASTGQQVQETDPSAVPVAKSCRRVLNFDLENTGNESQAAIFNRQ EMQEGRKSSESQAVGLWNTENSGFKTTLTTQSSQQMVLENCQPQTEISHTPSLSKMML IDYISMPGMPADTASQFQAKDLQMESRNVNARHVNMDNADLSQKSYSNGYSPTQQYIN PKGMDQSVSQRTSNWENIDGTNELILERCPKSVPTVLSNSSEGMGSKRDHSQAIEQGQ LYTASSLSSLLLQGVFQMNEGYRNGSTNGAGFLQALKRKKIEDESQAYIYGMKYGMSY SSGQLQTKGTNSEFTSLRDCGTSDPQFLQSDNIARRKSGGVSELTGDTNVHSTAAGPT SSKKHISSQLHSGMETLINTNGLTLAHNLATIENFDNLLPTTPKNAPTLQLGSVTKAS HTNVSEKKKREPDLSRRAPSGRGKKLQEQKELYEYQQSSKAGPSAKQIYPIPIEEIIN KFMGLTLDERNNEAKSEVQNALVIYKGAGTVVPYEGFEFIKKRKPRPKVDLDPETNRV WNLLMGKEGEDIEGTDKEKEKWWEEERRVFHGRVDSFIARMHLVQGDRRFSKWKGSVV DSVIGVFLTQNVSDHLSSSAFMSLAARFPFKSSCKRECDGDGVKILIEEPEFCEPNPN ETIKWHEKLFSHPLDRQSPMTSIMSTDYRRNGENPGIERTSFTETHSQSLEEEVLSSQ GSFDSSVIQANGVIRSYSGSNSETEDPTTCCKFNNFHGSSVDQMENSASFEEFCNSVN GSSPFHEGLKYKQSEVTENAQKSRLERKENLRGPSSFIQASHFRNQQVQVQAVGVSNH PLHMTLEFEAREREGLEPCGEECMSSWASTASGLNKLKQLGQSEDKITVHQNEQAISQ DMATTTLNTLSRKHITHQDTVSQPGAHTKSNQLCNNHQEMRNKAFQSESASVTMPLTT DAVNKMHKSTLLYAANALKLTERPSDVEKMSALNRDKDIENREVQSNTKEQIHSSEKE NGAYSFLKSKRRKAEGEKNNATDWDALRKLVQANGWKKERSKDTMDSLDYKAMRHANV NEISNAIKERGMNNMLAERIKEFLNRLVREHESIDLEWLREVPPDKAKDYLLSIRGLG LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLA LPGPEEKSITSSTVPMMSERNPVKVLNPMPLPPPEHNLLHVGPNNGSHEPIIEEPTTP EPEHTEESQSDIEDACYEDPDEIPTIKLNIEEFTANLQHYMQEKMELQESDLSKALVA LNPEAASIPTPKLKNVSRLRTEHYVYELPDDHPLLEEMEKREADDPSPYLLAIWTPGE TANTIQPPEQSCGSQEPGRLCNEKTCFACNSVREANAQTVRGTLLIPCRTAMRGSFPL NGTYFQVNEVFADHESSLNPMDVPREWLWNLPRRTVYFGTSVSTIFKGLSTEEIQYCF WKGMKCYF" CDS join(8826229..8826814,8827276..8829381,8829502..8829861, 8830692..8830782,8830877..8832278,8832394..8832473, 8832633..8832717,8832951..>8833001) /locus_tag="TCM_043681" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 6" /protein_id="EOY19043.1" /db_xref="Phytozome:POPTR_0010s24060.1" /db_xref="TAIR:AT5G04560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6KFZ1" /translation="MNFGEEFSIPQGNEFQFTGSWIPVTPQKPIATISNPIPVNGQGN QFGRGNWQELAGFSTGYVQDILNYNGIGQNFNPIEQMCQSRVDYVGSINSAENRMINN IAGPYTQVLQNESTGWNNNTLANLPATRNATAFAPANGTASIRRENAVPIPIMHSQAD NWRHSSSHNSMCTNQTHSTSLHFLRNIDRFYQMPQHDFPVPYKPMYNLNSPPRTEVDA AFHITTSFQSTPAAQDQTKIMGNKQLSTVPASASDESSIHEKGKQENLITYNANEVSQ HNCELLQNIVDSSSAVISTPVEEKRDSERGSEQGIDLNKTPQQKPPKRRKHRPKVIVE GKPKRNPKPATTKNINSKENPSGKRKYVRRKGLTESATEQADSTKKSDPTAATPAKRR YVRKKSLKESANEQIDSMKEFDPSAGTTVKGKYTEKKNQKESSTEKADCTRGSDPSAG TAGKRKYVRRNGLRASTGQQVQETDPSAVPVAKSCRRVLNFDLENTGNESQAAIFNRQ EMQEGRKSSESQAVGLWNTENSGFKTTLTTQSSQQMVLENCQPQTEISHTPSLSKMML IDYISMPGMPADTASQFQAKDLQMESRNVNARHVNMDNADLSQKSYSNGYSPTQQYIN PKGMDQSVSQRTSNWENIDGTNELILERCPKSVPTVLSNSSEGMGSKRDHSQAIEQGQ LYTASSLSSLLLQGVFQMNEGYRNGSTNGAGFLQALKRKKIEDESQAYIYGMKYGMSY SSGQLQTKGTNSEFTSLRDCGTSDPQFLQSDNIARRKSGGVSELTGDTNVHSTAAGPT SSKKHISSQLHSGMETLINTNGLTLAHNLATIENFDNLLPTTPKNAPTLQLGSVTKAS HTNVSEKKKREPDLSRRAPSGRGKKLQEQKELYEYQQSSKAGPSAKQIYPIPIEEIIN KFMGLTLDERNNEAKSEVQNALVIYKGAGTVVPYEGFEFIKKRKPRPKVDLDPETNRV WNLLMGKEGEDIEGTDKEKEKWWEEERRVFHGRVDSFIARMHLVQGDRRFSKWKGSVV DSVIGVFLTQNVSDHLSSSAFMSLAARFPFKSSCKRECDGDGVKILIEEPEFCEPNPN ETIKWHEKLFSHPLDRQSPMTSIMSTDYRRNGENPGIERTSFTETHSQSLEEEVLSSQ GSFDSSVIQANGVIRSYSGSNSETEDPTTCCKFNNFHGSSVDQMENSASFEEFCNSVN GSSPFHEGLKYKQSEVTENAQKSRLERKENLRGPSSFIQASHFRNQQVQVQAVGVSNH PLHMTLEFEAREREGLEPCGEECMSSWASTASGLNKLKQLGQSEDKITVHQNEQAISQ DMATTTLNTLSRKHITHQDTVSQPGAHTKSNQLCNNHQEMRNKAFQSESASVTMPLTT DAVNKMHKSTLLYAANALKLTERPSDVEKMSALNRDKDIENREVQSNTKEQIHSSEKE NGAYSFLKSKRRKAEGEKNNATDWDALRKLVQANGWKKERSKDTMDSLDYKAMRHANV NEISNAIKERGMNNMLAERIKEFLNRLVREHESIDLEWLREVPPDKAKDYLLSIRGLG LKSVECVRLLTLHHLAFPMLKKFILGIRYWSQFRN" gene complement(8837182..8838056) /locus_tag="TCM_043682" /note="dbxref CacaoGD:Thecc1EG043682" mRNA complement(join(8837182..8837207,8837303..8838056)) /locus_tag="TCM_043682" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1138t1" CDS complement(8837519..8837686) /locus_tag="TCM_043682" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19044.1" /translation="MYLPPWWHTFYASVIKITHRLVAFSFFFLTDQNVKEKRKREKIW VSSRKSLLYYI" gene complement(8839473..8845702) /locus_tag="TCM_043683" /note="dbxref CacaoGD:Thecc1EG043683" mRNA complement(join(8839473..8839702,8841253..8841785, 8844327..8844410,8845465..8845702)) /locus_tag="TCM_043683" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc171t16" CDS complement(join(8841649..8841785,8844327..8844393)) /locus_tag="TCM_043683" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19045.1" /translation="MHLRGSLWQFGWGSKVNPFVTKGMFRSLLEYVLQGLYFLSNKNM FPSLLSGNFLFSYLLSLQLSGFN" mobile_element 8849867..8849978 /note="source:CACAO_M_E69760_F9_scaffold_9 11945 12056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8849979..8852917) /note="source:CACAO_M_E84704_F245_scaffold_10 1 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8852918..8853383 /note="source:CACAO_M_E58324_F9_scaffold_9 111 573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8853382..8853475 /note="source:INTACT189_F49_scaffold_5-int 18489 18578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8854105..8857143 /note="source:scaffold_9_CACTA_0931 4 3057" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8858822..8861456 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1 2641" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8865498..8865593) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3190 3283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8865509..8865595 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3193 3279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8865561..8866095) /note="source:INTACT415F_F22_scaffold_4-int 1744 2243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8867246..8867370 /note="source:INTACT189_F49_scaffold_5-int 17685 17806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8867449..8867745 /note="source:INTACT189_F49_scaffold_5-int 17794 18056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8870216..8870381 /note="source:CACAO_M_E14537_F4_scaffold_3 740 902" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8875276..8877702 /note="source:INTACT1334F_F383_scaffold_8-int 2925 5241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8877703..8879724 /note="source:CACAO_M_S_E6531_F312_scaffold_2 3 2049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8882446..8882929 /note="source:CACAO_M_E4753_F17_scaffold_2 4931 5413" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8882929..8883762) /note="source:CACAO_M_E12256_F312_scaffold_3 1 828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8883763..8884721 /note="source:INTACT1334F_F383_scaffold_8-int 5235 6172" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8885190..8887412 /locus_tag="TCM_043688" /note="dbxref CacaoGD:Thecc1EG043688" mRNA join(8885190..8886951,8887061..8887316) /locus_tag="TCM_043688" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034712001" /inference="similar to AA sequence:Phytozome:POPTR_0010s24100.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3718t1" mRNA join(8885303..8886665,8886824..8887412) /locus_tag="TCM_043688" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034712001" /inference="similar to AA sequence:Phytozome:POPTR_0010s24100.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc664t2; alternateUTRof:Thecc1EG043688t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3718t1" mRNA join(8885312..8886665,8886824..8886951,8887061..8887390) /locus_tag="TCM_043688" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034712001" /inference="similar to AA sequence:Phytozome:POPTR_0010s24100.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc553t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3718t1" CDS join(8885470..8886665,8886824..8886881) /locus_tag="TCM_043688" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 2" /protein_id="EOY19047.1" /db_xref="Phytozome:POPTR_0010s24100.1" /db_xref="TAIR:AT5G04610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ALH2" /translation="MALDISIFETIHPSRFLSFTIPNPDPSLSSPLIRIAILDSPLHP STPSSSSLSAPNVAAMFVPKHRESDWLFSTESGHLQLLLSSPNIQRLILIGQQAIVDD PNSPSIYRRPIDSDCLNNLEMALKPLVIALSPKDYFKYGNLEVPILSYEDNVISSVVL EKCVGNFVGEMLVEDVEIESTNQKREFRRRLRFKRMPNLVQTEIRIVPRTVYCLDSVE IGGNDNVEFSPDLGVLVHVYLVPMVASLALVGSWMDERFQLGFRPKALCLGVGGGALV GFLKTQLDFQVVGVEADEEVLRVAQKYFGLEDGDFIQICVRDGMELMEKLARGDSYCE GAAHIDPQFDVIMVDLDSSDLSNGVSAPPLEFVRKDVLLAARSLLCESGIFVINVIPP SRLFYERSIYGIHEENLRCNVYWKQ" CDS join(8885470..8886665,8886824..8886881) /locus_tag="TCM_043688" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 2" /protein_id="EOY19048.1" /db_xref="Phytozome:POPTR_0010s24100.1" /db_xref="TAIR:AT5G04610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ALH2" /translation="MALDISIFETIHPSRFLSFTIPNPDPSLSSPLIRIAILDSPLHP STPSSSSLSAPNVAAMFVPKHRESDWLFSTESGHLQLLLSSPNIQRLILIGQQAIVDD PNSPSIYRRPIDSDCLNNLEMALKPLVIALSPKDYFKYGNLEVPILSYEDNVISSVVL EKCVGNFVGEMLVEDVEIESTNQKREFRRRLRFKRMPNLVQTEIRIVPRTVYCLDSVE IGGNDNVEFSPDLGVLVHVYLVPMVASLALVGSWMDERFQLGFRPKALCLGVGGGALV GFLKTQLDFQVVGVEADEEVLRVAQKYFGLEDGDFIQICVRDGMELMEKLARGDSYCE GAAHIDPQFDVIMVDLDSSDLSNGVSAPPLEFVRKDVLLAARSLLCESGIFVINVIPP SRLFYERSIYGIHEENLRCNVYWKQ" CDS 8885470..8886855 /locus_tag="TCM_043688" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 1" /protein_id="EOY19046.1" /db_xref="Phytozome:POPTR_0010s24100.1" /db_xref="TAIR:AT5G04610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ALH2" /translation="MALDISIFETIHPSRFLSFTIPNPDPSLSSPLIRIAILDSPLHP STPSSSSLSAPNVAAMFVPKHRESDWLFSTESGHLQLLLSSPNIQRLILIGQQAIVDD PNSPSIYRRPIDSDCLNNLEMALKPLVIALSPKDYFKYGNLEVPILSYEDNVISSVVL EKCVGNFVGEMLVEDVEIESTNQKREFRRRLRFKRMPNLVQTEIRIVPRTVYCLDSVE IGGNDNVEFSPDLGVLVHVYLVPMVASLALVGSWMDERFQLGFRPKALCLGVGGGALV GFLKTQLDFQVVGVEADEEVLRVAQKYFGLEDGDFIQICVRDGMELMEKLARGDSYCE GAAHIDPQFDVIMVDLDSSDLSNGVSAPPLEFVRKDVLLAARSLLCESGIFVINVIPP SRLFYERLVHDFQEVFPELYEIDVGNGENFVLIAKTLPTASSISDCENNFLKKLRLAI SGAYMESMKRI" mobile_element 8890821..8891389 /note="source:CACAO_M_E42395_F3_scaffold_5 1 572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8891375..8892479) /note="source:INTACT695_F301_scaffold_5-int 3397 4460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8894129..8895369 /note="source:CACAO_M_E42395_F3_scaffold_5 552 1774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8896652..8897852 /note="source:CACAO_M_E3659_F345_scaffold_1 1 1244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8897955..8898179 /note="source:CACAO_M_S_E1130_F134_scaffold_1 2723 2944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8898178..8898852 /note="source:CACAO_M_E43482_F345_scaffold_5 1947 2608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8905839..8906141 /note="source:scaffold_6_CACTA_0702 3349 3640" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8906463..8906835 /note="source:scaffold_6_CACTA_0702 7571 7940" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8906930..8907244 /note="source:scaffold_6_CACTA_0702 10 309" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8911288..8913931) /note="source:CACAO_M_S_E14423_F144_scaffold_2 1 2627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8914554..8917886) /note="source:INTACT570_F260_scaffold_5-int 8577 11865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8918461..8921514) /note="source:scaffold_9_CACTA_0931 1 3061" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8922222..8922259 /note="source:scaffold_6_CACTA_0702 11654 11691" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8923823..8925945) /note="source:CACAO_M_E11488_F17_scaffold_2 4163 6344" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8925681..8928590 /note="source:INTACT365_F17_scaffold_9-int 3314 6248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8930715..8931329) /note="source:scaffold_8_CACTA_0859 16876 17491" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8931667..8931841 /note="source:scaffold_3_CACTA_0382 10032 10205" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8935757..8937914 /note="source:CACAO_M_E14312_F12_scaffold_3 4347 6527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8937920..8940807) /note="source:CACAO_M_E35001_F15_scaffold_5 1 2891" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8940808..8941587 /note="source:CACAO_M_E14312_F12_scaffold_3 16671 17450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8942877..8942937 /note="source:CACAO_M_E5899_F5_scaffold_2 8903 8963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8943512..8943738) /note="source:CACAO_M_S_E51867_F7_scaffold_4 3279 3509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8944278..8944458 /note="source:scaffold_3_CACTA_0382 10027 10205" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8945443..8945673) /note="source:scaffold_3_CACTA_0382 10414 10645" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8945676..8946368) /note="source:CACAO_M_E5899_F5_scaffold_2 19651 20323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8946370..8946722) /note="source:scaffold_8_CACTA_0859 16522 16878" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8947590..8948231) /note="source:scaffold_9_CACTA_0931 1 644" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8948261..8951204 /note="source:CACAO_M_E48206_F72_scaffold_6 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8951830..8951911 /note="source:CACAO_M_E5899_F5_scaffold_2 1122 1202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8961544..8964498) /note="source:CACAO_M_S_E144882_F33_scaffold_10 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8965406..8965482 /note="source:scaffold_8_CACTA_0858 34 110" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8965482..8967845 /note="source:scaffold_8_CACTA_0858 5257 7650" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8970781..8970841 /note="source:CACAO_M_E5899_F5_scaffold_2 20725 20786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8970798..8970853) /note="source:CACAO_M_E5899_F5_scaffold_2 20732 20786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8970964..8971288) /note="source:scaffold_9_CACTA_0931 17126 17454" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8971203..8971307) /note="source:CACAO_M_E5899_F5_scaffold_2 20735 20825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8974134..8974192 /note="source:CACAO_M_S_E50960_F369_scaffold_4 12322 12380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8974833..8974948 /note="source:scaffold_1_CACTA_0028 3508 3600" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8975632..8975723 /note="source:scaffold_1_CACTA_0028 2653 2742" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8979993..8982569 /note="source:CACAO_M_E58324_F9_scaffold_9 7666 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8982906..8984752 /note="source:INTACT167_F5_scaffold_2-int 3834 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8994308..8994353) /note="source:scaffold_3_CACTA_0382 1859 1904" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8997956..8998792) /note="source:CACAO_M_E1841_F5_scaffold_1 15772 16662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8998771..8998861) /note="source:INTACT1219F_F95_scaffold_6-int 10406 10498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8999041..8999760) /note="source:CACAO_M_E1841_F5_scaffold_1 9009 9895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9000463..9007005) /note="source:INTACT735_F7_scaffold_8-int 3385 9944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9007006..9011203 /note="source:CACAO_M_E69186_F33_scaffold_9 1 4181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9009513..9014805) /note="source:INTACT1219F_F95_scaffold_6-int 3092 8367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9014792..9016143 /note="source:INTACT607_F3_scaffold_4-int 9526 10873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9018119..9019664) /note="source:CACAO_M_E58819_F24_scaffold_9 14103 15315" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9019663..9020115 /note="source:CACAO_M_S_E99035_F335_scaffold_9 4700 5152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9019909..9020254) /note="source:CACAO_M_E35176_F7_scaffold_5 9382 9727" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9020104..9023295 /note="source:scaffold_2_CACTA_0259 3325 6482" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9023293..9026268) /note="source:CACAO_M_E9677_F7_scaffold_2 6435 9414" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9026246..9026907) /note="source:CACAO_M_S_E5046_F335_scaffold_1 19210 19812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9026904..9027618 /note="source:CACAO_M_S_E99035_F335_scaffold_9 1969 2682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9029642..9030235 /note="source:scaffold_4_CACTA_0494 3 597" /mobile_element_type="transposon:TIR/CACTA" gene 9029785..9038473 /locus_tag="TCM_043701" /note="dbxref CacaoGD:Thecc1EG043701" mRNA join(9029785..9029889,9037720..9037740,9037913..9038473) /locus_tag="TCM_043701" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element 9030236..9033241 /note="source:INTACT607_F3_scaffold_4-int 10869 13859" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(9037731..9037740,9037913..9038109) /locus_tag="TCM_043701" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19049.1" /translation="MDLSCGYTNVAIARKNVLDFVGVMVNMVMMYSYQPLKFFVLRLI WLDMITYGELLSTFEFFCIKIDMA" mobile_element complement(9040024..9040461) /note="source:INTACT280_F60_scaffold_5-int 13870 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9041679..9042328) /note="source:CACAO_M_E1841_F5_scaffold_1 3099 3751" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9046441..9048655 /locus_tag="TCM_043703" /note="dbxref CacaoGD:Thecc1EG043703" mRNA 9046441..9048655 /locus_tag="TCM_043703" /product="Cytochrome P450" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022518t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24310.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc475t1" CDS 9046602..9048110 /locus_tag="TCM_043703" /note="paralog of Thecc1EG022518t1" /codon_start=1 /product="Cytochrome P450" /protein_id="EOY19050.1" /db_xref="Phytozome:POPTR_0010s24310.1" /db_xref="TAIR:AT2G27690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A3C8P5" /translation="MEDQPFSFLQSMQTYFGLLSFFTLPFFLFSVLLYLRQKIWCSCD ICHAYLSSNWSKEFNNLCDWYTYLLQKSPSQTIHIHVLNNTITANPENVEYMLKTRFN DYPKGKSFAMILGDLLGKGIFNVDGDLWMFQRKMASLELANFAIRAYAFEIVATEIKY RLLPLLSSFSGKDGSVLDLQEVFRRFSFDNICKFSFGLDPGCLESSLPISHFADAFDL ASKLSAERGMAPVPLLWKIKRIFNIGSEKKLKKAIEAVNGLAMEVIMQKRKLGFSTHK DLLSRFMACINDDSYLRDIVISFILAGRDTMASALTTLFWLLANHPLAISEIRKESDQ FRESNQEFASYDQIRKMHYLHATVYESLRLYPPVQFDSKFACKDDILPDGTFVQKGTR VTYHPYAMGRMENVWGSDCIKFKPERWLKDGTFCPQCPFKYPVFQAGVRVCLGKELAL VEMKVVVLSVLRQFDIELVAPKVAPQFDPGLTAMVRGGLQVVIRKRRDIAAA" mobile_element 9052194..9059215 /note="source:INTACT528_F17_scaffold_6-int 3 7101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9059937..9061356 /note="source:CACAO_M_S_E31635_F14_scaffold_3 1733 3043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9061396..9062828 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3269 4709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9066174..9066559 /note="source:CACAO_M_E53587_F207_scaffold_8 2960 3346" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9066593..9068308) /note="source:CACAO_M_S_E144857_F60_scaffold_10 1 1716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9068848..9069023) /note="source:INTACT261_F189_scaffold_2-int 12383 12588" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9071908..9073419) /note="source:CACAO_M_S_E144855_F17_scaffold_10 1 1512" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9073516..9073743 /note="source:CACAO_M_E84368_F4_scaffold_10 1 229" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9077272..9077422) /note="source:INTACT599_F268_scaffold_9-int 10401 10550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9079257..9081729) /note="source:CACAO_M_E84368_F4_scaffold_10 4507 6992" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9081997..9085067) /note="source:INTACT599_F268_scaffold_9-int 8234 10979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9084636..9086807 /note="source:CACAO_M_E8_F73_scaffold_1 2107 4290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9087266..9089156) /note="source:INTACT599_F268_scaffold_9-int 8232 10102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9091072..9091207) /note="source:scaffold_5_CACTA_0584 4752 4884" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9092928..9093000) /note="source:scaffold_4_CACTA_0482 7654 7730" /mobile_element_type="transposon:TIR/CACTA" gene 9094684..9096472 /locus_tag="TCM_043707" /note="dbxref CacaoGD:Thecc1EG043707" mRNA join(9094684..9094696,9095544..9095619,9096073..9096317, 9096394..9096472) /locus_tag="TCM_043707" /product="Anti-oxidant 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24290.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24290.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4456t2" CDS join(9094688..9094696,9095544..9095619,9096073..9096248) /locus_tag="TCM_043707" /codon_start=1 /product="Anti-oxidant 1" /protein_id="EOY19051.1" /db_xref="Phytozome:POPTR_0010s24290.1" /db_xref="TAIR:AT1G66240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D0J5" /translation="MSQTVFLKVGMSCEGCVGAVKRVLGKMEGVESYEVDLKEQKVTV KGNVQPDAVLQTVSKTGKKTTFWETEAPAEPEAKPAEAVATA" mobile_element complement(9098832..9099265) /note="source:CACAO_M_E43672_F60_scaffold_5 4951 5384" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9103815..9111684) /locus_tag="TCM_043710" /note="dbxref CacaoGD:Thecc1EG043710" mRNA complement(join(9103815..9104780,9104872..9105074, 9105156..9105204,9106403..9106674,9107171..9107253, 9108191..9108289,9108399..9108860,9109113..9109382, 9110117..9110288,9111053..9111684)) /locus_tag="TCM_043710" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(9104531..9104780,9104872..9105074, 9105156..9105204,9106403..9106674,9107171..9107253, 9108191..9108289,9108399..9108860,9109113..9109382, 9110117..9110288,9111053..9111217)) /locus_tag="TCM_043710" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19052.1" /translation="MLLTYKIFLSVFQLVTRCSSLGTSMLSSWVFVWMPWCTLGHYGL DLYKAMALPTFATSLRSFETQVGQLASTVNNKAQGTFLSDTKTNLMRKGKEHVKAITL RSRKKVETLLISVVDKVISEVFTENQPNDRLVASLVPDFKRHDEDVIECVNLLDGPSC VMRTQFETLEFPSSSSSLSKPSIEEPPKLELKPLSNHLDAYLDAGIIYPISDNERVSS MQCVQKKGGMIVVENENNELILLKIVTGWKVCMDYRKLNKAMRKDLFSLLFIDQMLDK LTGKEFYFFLDGYFGYNQIAIDPEDKENSTITCLYCTFAFKRMPFELCNAPTALQRYI MAIFSNMVEQILEVFMDNFIVFGIVLGHKVSSKGLEVDKAKIETIEKLPLPSSGKGVR EWGTFSKNLRYCSIASLKWRFFMFRKLNFDLDAISEKRLSQPNEMDEFQLNAYENAKI YKEKTNRWHDLKIVECHFELGQHVQLFNSSLKFFLGKLKSRWSRPFIVSKVFHMEQCR IITEWKWEKFFEQPEVVCFASQTINQFYNLPNIKSDEYGQYLAINVDLHEVIGLLCNE GTKWKMNKGVLLSFKASAMKKDYKLWMSINVRYLVFNSIVQATRSPHDGLWYPSLITT LCKKVGVIWDKSEEILHPKVLLDIGIMHQLYAREHLAGRGSSSSALCHPP" mobile_element 9106088..9106274 /note="source:CACAO_M_E49546_F9_scaffold_7 3533 3701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9111700..9111903 /note="source:INTACT714_F310_scaffold_9-int 10799 11000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9116935..9120662 /note="source:INTACT469_F79_scaffold_2-int 1 3733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9120663..9123426) /note="source:CACAO_M_E84655_F87_scaffold_10 1 2764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9123427..9124572) /note="source:INTACT629_F279_scaffold_8-int 2583 3729" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9124510..9126829 /note="source:CACAO_M_E22705_F79_scaffold_3 414 2789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9126830..9127453) /note="source:INTACT88_F12_scaffold_4-int 12223 12849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9128502..9128997) /note="source:INTACT88_F12_scaffold_4-int 10516 10877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9135061..9136494) /note="source:CACAO_M_S_E144841_F9_scaffold_10 1 1434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9136496..9136574) /note="source:CACAO_M_E58324_F9_scaffold_9 23546 23624" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9136506..9137218 /note="source:INTACT280_F60_scaffold_5-int 8995 9684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9137894..9138157) /note="source:CACAO_M_E48538_F49_scaffold_6 1538 1801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9138159..9141318) /note="source:CACAO_M_E57889_F328_scaffold_9 1 3161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9141319..9142067) /note="source:CACAO_M_S_E64608_F12_scaffold_5 14338 15084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9142064..9142160) /note="source:CACAO_M_S_E101805_F5_scaffold_9 2355 2452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9142067..9142149 /note="source:INTACT280_F60_scaffold_5-int 10835 10918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9142145..9142588 /note="source:INTACT280_F60_scaffold_5-int 13870 14335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9143044..9143206) /note="source:CACAO_on_E33_A_scaffold_3 7404 7597" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(9143439..9143526) /note="source:CACAO_on_E33_A_scaffold_3 11625 11703" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 9144299..9147163 /locus_tag="TCM_043713" /note="dbxref CacaoGD:Thecc1EG043713" mRNA join(9144299..9146474,9146569..9147163) /locus_tag="TCM_043713" /product="Pentatricopeptide repeat-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400033858" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400033858" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS join(9144516..9146474,9146569..9146625) /locus_tag="TCM_043713" /codon_start=1 /product="Pentatricopeptide repeat-containing protein" /protein_id="EOY19053.1" /db_xref="Phytozome:PGSC0003DMP400033858" /db_xref="TAIR:AT2G27610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUW3" /translation="MSSFSRLFRLLGDTRSIRNGIALHAKIITSQISRDIYTNNHLLA MYVKFNRIVDARKVFDGMPERNVISWTALISGYSQMGMAEKALDCLSLMVSDDLEPNY YTFVSAVSACASLGDGSVGKEVHGRIYRSGVDFSTPVCNSLINMYGKCGLLKSAQLVF DAMLEPNLISWTSLLSCYCQQGENMESLKIFVQSRRVGVRVNEFTCASVLSVCAGLED LKVGMQIHGLVVKCGLEFDKFVETGLISFYTKCGELILAGQVFLEVNQSNVAAWTSLI GGYVQQGRREEAIDLFLKLHSSGIRPSERTFSSVLGACADAEVIEVGKQFHSLIAKMG YVSFIYVGNAVLDFYSKCGLLQEALRTFEDMDGHDMVSWNSLISGHVGSGQYEDAIEL LKEMLFQGYKPNLYTYSSILNICSDVPAIEWGKQTHCCIIKPAFDSNVVVGSALIDMY AKCGVLNAARKVFDYLTSKNLVSWNTMLVGYAQHGFAREALEIYCMMQRDDVKPNDVT FVGVLSACAHAGLSEEGLHYYNSMIRDHSIAPKMEHLASIVNLLARKGATRRAYDFIR SFPTDPSKVVWRCLLSGCKSHKDLVLGRFAAEKILSIDPEDTSAYIMLSNIYAEAKMW DETAQLRKIMKEKAMKKDAGYTWIELKNKDICLMTCYVFTVRSELRM" gene 9149662..9155562 /locus_tag="TCM_043714" /note="dbxref CacaoGD:Thecc1EG043714" mRNA join(9149662..9149863,9151889..9152098,9152989..9153039, 9154402..9154698,9154878..9155024,9155244..9155562) /locus_tag="TCM_043714" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene05639" /note="quality class is medium, express is medium, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS join(9152042..9152098,9152989..9153039,9154402..9154698, 9154878..9155024,9155244..9155342) /locus_tag="TCM_043714" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19054.1" /translation="MQLYEFNDKTYSTLSNDSWMPFYLRTSLDHYNITFRCPWLCVGD FNEIFYESEKIGGTDRNESSMRAFRETCTDCVLRDLGYRGPRFTWWNNRDEEARIRCR LDRAMATQDWSAKFPRMVVFTESLGALDHLVLRSIPLKDVQDRIKEKQKELQDAYVEE VSLLANQRIKVLQKEVQRLAREKELVLAHIQPCITVDMNEVLAADITLEEVRLVLF" gene 9155650..9157537 /locus_tag="TCM_043715" /note="dbxref CacaoGD:Thecc1EG043715" mRNA join(9155650..9155796,9155863..9155957,9156634..9157537) /locus_tag="TCM_043715" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039161t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc5177t1" CDS join(9155727..9155796,9155863..9155957,9156634..9156864) /locus_tag="TCM_043715" /note="paralog of Thecc1EG039161t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19055.1" /translation="MGNFALKLDMRKAYDWVEWLFVQVTYSVLVNGVLGNMIKPTRGL RQGDPLSPFPLALVGSNPSYLWRSIKKSQSLIKSGSYCRVGAGQNILARKSNWIPYDT PRPVVSCAEIVSNSTKVSEFIVHEQMVWD" mobile_element complement(9155730..9155783) /note="source:CACAO_LINE_E_207_scaffold_8 2746 2799" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(9158059..9158135) /note="source:CACAO_M_E11925_F316_scaffold_2 408 485" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9159562..9161062) /note="source:INTACT741_F17_scaffold_3-int 6648 8135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9160899..9161265 /note="source:CACAO_M_E639_F17_scaffold_1 3908 4276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9163192..9164330 /note="source:CACAO_M_E5899_F5_scaffold_2 21578 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9164332..9167290 /note="source:CACAO_M_E639_F17_scaffold_1 4268 7221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9165014..9168823) /note="source:INTACT741_F17_scaffold_3-int 1 3846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9171465..9174457 /note="source:CACAO_M_S_E65837_F7_scaffold_5 1 3005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9184424..9187239 /note="source:CACAO_M_E44150_F74_scaffold_5 1765 4592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9195266..9195438 /note="source:scaffold_3_CACTA_0388 4273 4444" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9195439..9195461) /note="source:CACAO_M_E3540_F15_scaffold_1 8362 8448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9199091..9202022) /note="source:CACAO_M_S_E144824_F33_scaffold_10 1 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9203369..9203479 /note="source:CACAO_M_E1841_F5_scaffold_1 22975 23083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9204494..9207328) /note="source:CACAO_M_E84635_F15_scaffold_10 1 2835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9207329..9207521 /note="source:scaffold_3_CACTA_0382 9599 9790" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9207505..9208905 /note="source:scaffold_3_CACTA_0382 10503 11900" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9210151..9210790 /note="source:scaffold_3_CACTA_0382 296 947" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9210790..9211550 /note="source:CACAO_M_E1841_F5_scaffold_1 3101 3862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9212791..9213136) /note="source:CACAO_M_E58819_F24_scaffold_9 15926 16271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9213618..9214816 /note="source:scaffold_3_CACTA_0388 9819 10978" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9214810..9215494 /note="source:CACAO_M_E1841_F5_scaffold_1 14502 15185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9215470..9217839 /note="source:scaffold_3_CACTA_0382 942 3342" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9217834..9218289 /note="source:scaffold_3_CACTA_0382 6181 6651" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9218455..9218584 /note="source:scaffold_3_CACTA_0382 10503 10632" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9218462..9218651) /note="source:CACAO_M_S_E84376_F22_scaffold_6 17446 17628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9218634..9219516 /note="source:scaffold_3_CACTA_0382 11039 11899" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9219524..9220582 /note="source:CACAO_M_S_E52921_F60_scaffold_5 18327 19353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9225844..9230793 /note="source:CACAO_LINE_E_239_scaffold_9 4 4946" /mobile_element_type="retrotransposon:LINE/L1" gene complement(9231595..9238554) /locus_tag="TCM_043721" /note="dbxref CacaoGD:Thecc1EG043721" mRNA complement(join(9231595..9232262,9232358..9233032, 9238429..9238554)) /locus_tag="TCM_043721" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030494t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400066018" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS complement(join(9231917..9232262,9232358..9233032, 9238429..9238487)) /locus_tag="TCM_043721" /note="paralog of Thecc1EG030494t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19056.1" /db_xref="Phytozome:PGSC0003DMP400066018" /translation="MTVEGTLLLIFHASTCIVNKWMNYKHILIHLSNEQDFNRIWTKQ TWFIANQKMRVFKWTPEFETEKEPSTVPVWISFPNLKAHLFEKSALLLIAKAIGNPLW IDEATANGTRPSVARVCIEYDCLKLPVDSVWIVVSKRGSKDMLGGYLQKVEFSPMSEY CNHCCHVGHSVSECLIVGTKSTTHKQGGKTAFESSHGRTHNNALSDQKDTEERTTMDG RENVALVEKKKTRSRRYLRNLIYGGKRFAVLESVEEDENQEQDQMEKHGITEDMNNIL AKEKTSLGRSVDVGKRKESDTGETYELEDGRRLSCEDPNTKQQLQCKIGKGKERHVEK EIANAGNVSCHLTGHGDRRSGNRRR" mobile_element complement(9234291..9234392) /note="source:CACAO_M_S_E85177_F5_scaffold_7 20146 20262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9234545..9236998) /note="source:CACAO_M_E52239_F256_scaffold_7 19810 22284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9237727..9238369 /note="source:INTACT591_F264_scaffold_1-int 20595 21225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9238416..9238469) /note="source:scaffold_8_CACTA_0859 16513 16566" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9239006..9249039 /note="source:CACAO_M_E59389_F22_scaffold_9 1 10046" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9249278..9249420) /note="source:CACAO_M_E14312_F12_scaffold_3 16493 16630" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9249295..9254984 /note="source:CACAO_M_E9661_F15_scaffold_2 7370 13542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9254983..9256509) /note="source:CACAO_M_E56633_F15_scaffold_8 1 1529" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9257814..9258700 /locus_tag="TCM_043724" /note="dbxref CacaoGD:Thecc1EG043724" mRNA join(9257814..9258143,9258424..9258700) /locus_tag="TCM_043724" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS 9257846..9258130 /locus_tag="TCM_043724" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19057.1" /translation="MNIKYSYYFNSKYYVHGYLEVKKFHSGFALVLSILNVQVVYLAV LFATKGKSCLLTRPNNKQNSEFLFYFLMIDSLSSSSCHGCFCPFPSMSWK" gene 9259751..9278625 /locus_tag="TCM_043725" /note="dbxref CacaoGD:Thecc1EG043725" mRNA join(9259751..9261375,9262246..9263881,9278343..9278625) /locus_tag="TCM_043725" /product="CC-NBS-LRR class disease resistance protein" /inference="alignment:exonerate- protein:2:ricco:30226.m002006" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043730t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s13530.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8842t3" CDS join(9260274..9261375,9262246..9263582) /locus_tag="TCM_043725" /note="paralog of Thecc1EG043730t1" /codon_start=1 /product="CC-NBS-LRR class disease resistance protein" /protein_id="EOY19058.1" /db_xref="Phytozome:POPTR_0018s13530.1" /db_xref="TAIR:AT1G50180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6FF62" /translation="MAEFIMSYALERLGDFLIGEVKFFQGVGQELDHVNTQLQWMKAF LKDASAKQDKDERIRNWMAEIQILAYDIEDIVESLALEVESTKKAGAKFAIWNPVKTK YNLGSKLEDINVRISDLTKSLKAFGIRELPITEGSNSAIDRKPKRSSSLWKNYPHIPE NPVGVDEDVNLLVKKLVGEERRGGVWRCCAGGFAETSQGDNLRKHRVVSICGMGGIGK TTLAKKVYSHAKVRQGFDHFVWINISQQWEKRSTWEQILFKLSPPSKEQREEIEKMRD DDVAEMVFKELQKKKCLVVLDDIWDVHAWKILSAGFPTEDTGSKIILTTRKKEVARHA DPRCYIHEPRCLNEARSWELFQRIALPRPPDDQDARNGYGLEKLGKEMVKHCKGLPLA ITVLGGLLSTKQTFDEWDKVHENIKSYLNRQDESFSIPEVLALSYDDLPQRLKPLFLY LGIFPEDFLISVKKLTNLWIAEGMIPPVSGYEGEETMEDVAYRYLDEMAERYMVQVEK RSPTGRIKTCRMHDLMRDLCLSRAQGEDICDVANLNDKNKHNDFFQSITTKMMKPTGR IRRLSVNLRNFSGHIGFENEHYPPIRSILGFSLQEHSGISQQLMESMVNKFKLLRILD LDNVKGFKIPDEIGKLVHLRLLNVASAWIGELPSSMGDLSCLLTLYLDRQYSTSRMPD VFWKMERLRHLYLPPDCGYETERLRFANLGNLQTLFNFPSRHADVKDLITLTNLRKLV IVIEDEASLGSFQEIFEPGTVTFNHLRSLIIKPKWISFNSTLDVEKVTACCPRLCKLK LHGKKVYERGTNAS" mobile_element complement(9264365..9265436) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3623 4755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9267529..9268488) /note="source:CACAO_M_S_E52921_F60_scaffold_5 5088 6032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9268482..9271042) /note="source:CACAO_M_E58324_F9_scaffold_9 7669 10228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9271044..9272316) /note="source:CACAO_M_S_E52921_F60_scaffold_5 3821 5091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9272317..9272396 /note="source:CACAO_M_E1841_F5_scaffold_1 22975 23050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9275018..9275049 /note="source:INTACT146F_F14_scaffold_2-int 10443 10474" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9275050..9277922) /note="source:CACAO_M_S_E144798_F230_scaffold_10 1 2873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9282427..9282480) /note="source:scaffold_10_CACTA_0139 7968 8031" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9282445..9282489 /note="source:scaffold_10_CACTA_0139 7774 7817" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9283461..9284589 /note="source:CACAO_M_S_E89905_F17_scaffold_8 1 1134" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9283847..9289107 /locus_tag="TCM_043727" /note="dbxref CacaoGD:Thecc1EG043727" mRNA join(9283847..9283903,9287892..9289107) /locus_tag="TCM_043727" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element 9284579..9284878 /note="source:CACAO_M_S_E18964_F17_scaffold_3 1211 1515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9285940..9287102) /note="source:CACAO_M_S_E1495_F60_scaffold_1 5060 6244" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 9288013..9288240 /locus_tag="TCM_043727" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19059.1" /translation="MLKQPTESQITLEVKSQIMLNAEATSRESKSSSKYTQRMATKSC RRESQARHKPLSLLTTILVGTECSRRDEDST" mobile_element complement(9292460..9293264) /note="source:INTACT187_F9_scaffold_2-int 1148 1944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9295991..9298937 /note="source:CACAO_M_E71583_F44_scaffold_10 1 2970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9298816..9298954) /note="source:INTACT212_F171_scaffold_10-int 10607 10749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9302676..9302932) /note="source:CACAO_M_S_E16705_F17_scaffold_2 4 241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9302935..9303092) /note="source:scaffold_10_CACTA_0139 7246 7391" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9303093..9303146) /note="source:scaffold_10_CACTA_0139 6034 6088" /mobile_element_type="transposon:TIR/CACTA" gene 9304316..9310222 /locus_tag="TCM_043730" /note="dbxref CacaoGD:Thecc1EG043730" mRNA join(9304316..9304403,9304531..9305906,9306914..9306997, 9308664..9310222) /locus_tag="TCM_043730" /product="CC-NBS-LRR class disease resistance protein" /inference="alignment:exonerate- protein:2:ricco:30226.m002006.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043725t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s13530.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3790t1" CDS join(9304814..9305906,9306914..9306997,9308664..9309997) /locus_tag="TCM_043730" /note="paralog of Thecc1EG043725t1" /codon_start=1 /product="CC-NBS-LRR class disease resistance protein" /protein_id="EOY19060.1" /db_xref="Phytozome:POPTR_0018s13530.1" /db_xref="TAIR:AT1G50180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6FF62" /translation="MTEFIMSYALERLGYFLIDGVKFFQGVGQEFDHVKSQLQWMKAF LKDAYAKQDKDERIRNWMAEIRTLAYDIEDIVESLALEVASKKKAGKTFAIWNQAKSK YNLGSKLEDINVRISDLRQSLKTFGLRELTIPEGSNSAIDWKTKRSSSLWKNYPHIPE NPVGVDEDVNLLVKKLVGDHPGGSAEASQAGNFKDHRVVAVCGMGGIGKTTLAKKVYN HAKLRQRFDHFVWINVSQQWEKRGSWEQILFKLSPPSKEQREEIEKMTDDDIAEMVFK ELQKKKCLVVLDDIWHVHAWKILSAGFPTEDTGSKIILTSRNKDVARHADPRCYIHEP RCLNEARSWELFQRVALPRLPDDQGLTYLTRLELHLSLHLPSYFSLYFSPAPSSTIIK SARNDYDLEKLGKEMVKHCKGLPLAIIVLGGLLSTKQTFDEWDKVHENIKSYLNHQDQ SFSILEVLALSYDDLPQRLKPLFLYLGIFPEDFLISVKKLTNLWVAEGMIPPVSGFEG EETMEDVAYRYLDEMAQRYMVQVEKRSSTGRIKTCRMHDLMRDLCLSRAQGEDIFDVV NLNDKNRHNDFFQCLTTKMKLAGRTRRVSVNLRNFSGRIGMENEQYPLVRSILGFSLQ DHSGIQQQLMESMVNKFKLLRVLDLDNVKGFQIPDEIGKLVHLRLLNVASAWIGELPS SMGDLSCLLTLYLDRRYSTSRMPDVFWKMQRLRHLYLPPDCGRKTEKLRFANLGNLQT LFNFPSRHADVKDLITLTNLRKLVIVIEDEASLGSFQEIFKPETVTFNHLRSLMIVPK RISFNSTLDVEKVAACCPRLRKLKLHGKKVYERGTNAS" mobile_element complement(9310819..9311789) /note="source:CACAO_M_E49885_F60_scaffold_7 736 1710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9312793..9314045) /note="source:CACAO_M_S_E1495_F60_scaffold_1 10832 12070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9316642..9317914) /note="source:CACAO_M_E49885_F60_scaffold_7 6572 7844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9317915..9317994 /note="source:CACAO_M_E52639_F333_scaffold_7 3598 3673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9320654..9323526) /note="source:CACAO_M_S_E144792_F230_scaffold_10 1 2867" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9324401..9325819) /locus_tag="TCM_043731" /note="dbxref CacaoGD:Thecc1EG043731" mRNA complement(join(9324401..9324985,9325518..9325819)) /locus_tag="TCM_043731" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044987t1" /inference="similar to AA sequence:Phytozome:GSVIVT01018780001" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(join(9324543..9324985,9325518..9325680)) /locus_tag="TCM_043731" /note="paralog of Thecc1EG044987t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19061.1" /db_xref="Phytozome:GSVIVT01018780001" /translation="MLSSIVSASNAMRLIGHGCQGFLALVKDTQMVVGEIVNVLVVRD FLNAFLEELLVYLRSRDKHKQHLKIVFQIMRKHVLCAKFSKSEFWFDSASFIGHIVYK NGVMVDPKKIEVVKKWLRLTSITKIRSLLRITRYYRRFVKDFSKIITPITRLTQKGVK FIWIDACEESFGKLKTCLTTSLVLSLPCRSGGYTIYYYAHE" mobile_element 9327901..9327936 /note="source:scaffold_10_CACTA_0139 7774 7809" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9328927..9330424 /note="source:CACAO_M_S_E89905_F17_scaffold_8 1 1493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9330753..9330848) /note="source:scaffold_4_CACTA_0482 7641 7738" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9331487..9332645) /note="source:CACAO_M_S_E1495_F60_scaffold_1 5054 6245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9338018..9338823 /note="source:CACAO_M_E11098_F15_scaffold_2 14183 14991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9340521..9340536) /note="source:CACAO_M_S_E144426_F33_scaffold_10 10079 10097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9340537..9343314 /note="source:CACAO_M_E85668_F15_scaffold_11 1 2778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9343315..9343357) /note="source:INTACT407F_F356_scaffold_4-int 5132 5159" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9344334..9347310 /note="source:CACAO_M_E71583_F44_scaffold_10 1 2970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9347861..9350529 /note="source:CACAO_M_S_E32580_F369_scaffold_4 1 2649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9350665..9353250 /note="source:INTACT30F_F12_scaffold_1-int 11998 14079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9353259..9355876 /note="source:CACAO_M_S_E85957_F12_scaffold_7 11366 13969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9355877..9356119) /note="source:CACAO_M_E49885_F60_scaffold_7 11142 11383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9356120..9358696 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1 2627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9358698..9358870) /note="source:CACAO_M_S_E52921_F60_scaffold_5 18665 18834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9358864..9358994) /note="source:CACAO_M_E49885_F60_scaffold_7 10811 10943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9360138..9361566 /note="source:CACAO_M_E58601_F7_scaffold_9 8806 10229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9362319..9362674) /note="source:CACAO_M_E49885_F60_scaffold_7 6572 6928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9362675..9362754 /note="source:CACAO_M_E1841_F5_scaffold_1 3101 3175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9370660..9372223 /note="source:CACAO_M_E58819_F24_scaffold_9 14308 15815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9376368..9377175 /note="source:CACAO_M_E11098_F15_scaffold_2 14183 14992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9379908..9386237 /note="source:CACAO_M_S_E32591_F276_scaffold_4 286 6723" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9386234..9387253 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 6833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9387254..9389937) /note="source:CACAO_M_E84600_F369_scaffold_10 1 2684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9389938..9390778 /note="source:CACAO_M_S_E64023_F13_scaffold_5 6829 7678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9392320..9393364 /note="source:CACAO_M_S_E99244_F4_scaffold_9 5249 6318" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9393272..9393378) /note="source:CACAO_M_E5326_F22_scaffold_2 9561 9660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9393286..9393375 /note="source:INTACT695_F301_scaffold_5-int 4359 4447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9393357..9394521 /note="source:CACAO_M_S_E15173_F4_scaffold_2 7655 8821" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9395871..9395962) /note="source:CACAO_M_E72142_F322_scaffold_10 722 798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9395886..9395943 /note="source:CACAO_M_E5326_F22_scaffold_2 3423 3480" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9396393..9396568) /note="source:INTACT695_F301_scaffold_5-int 817 992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9396578..9396636 /note="source:INTACT406_F208_scaffold_3-int 6366 6424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9396585..9397677 /note="source:INTACT724_F4_scaffold_8-int 6356 7487" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9399024..9399780 /note="source:CACAO_M_E24592_F195_scaffold_4 19813 20525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9401109..9401199) /note="source:INTACT241_F183_scaffold_6-int 3825 3916" /mobile_element_type="retrotransposon:LTR/Copia" gene 9401641..9405591 /locus_tag="TCM_043735" /note="dbxref CacaoGD:Thecc1EG043735" mRNA join(9401641..9401767,9402153..9402497,9402603..9402645, 9402842..9402883,9402966..9403236,9404221..9404520, 9405117..9405380) /locus_tag="TCM_043735" /product="C2H2 and C2HC zinc fingers superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29647.m002039" /inference="similar to AA sequence:ricco:29647.m002039" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3879t3" mRNA join(9402100..9402645,9402842..9402883,9402966..9403236, 9404221..9404427,9405117..9405591) /locus_tag="TCM_043735" /product="C2H2 and C2HC zinc fingers superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29647.m002039" /inference="similar to AA sequence:ricco:29647.m002039" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc154t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3879t3" mRNA join(9402100..9402497,9402603..9402645,9402842..9402883, 9402966..9403236,9404221..9404427,9405117..9405591) /locus_tag="TCM_043735" /product="C2H2 and C2HC zinc fingers superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29647.m002039" /inference="similar to AA sequence:ricco:29647.m002039" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc154t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3879t3" mRNA join(<9402468..9402497,9402849..9402883,9402966..9403245, 9404220..9404520,9405117..9405591) /locus_tag="TCM_043735" /product="C2H2 and C2HC zinc fingers superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29647.m002039" /inference="similar to AA sequence:Phytozome:POPTR_0003s05710.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7711t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3879t3" mRNA join(<9402468..9402497,9402849..9402883,9402966..9403245, 9404220..9404427,9405117..9405591) /locus_tag="TCM_043735" /product="C2H2 and C2HC zinc fingers superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29647.m002039" /inference="similar to AA sequence:Phytozome:POPTR_0003s05710.1" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7711t6; alternateUTRof:Thecc1EG043735t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3879t3" mRNA join(<9402468..9402497,9402849..9402883,9402966..9403240, 9404221..9404520,9405117..9405591) /locus_tag="TCM_043735" /product="C2H2 and C2HC zinc fingers superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:29647.m002039" /inference="similar to AA sequence:Phytozome:POPTR_0003s05710.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7711t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3879t3" CDS join(<9402470..9402497,9402849..9402883,9402966..9403245, 9404220..9404368) /locus_tag="TCM_043735" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein isoform 4" /protein_id="EOY19065.1" /db_xref="Phytozome:POPTR_0003s05710.1" /db_xref="TAIR:AT4G03120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EED5" /translation="DLTFSKSCLVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRI KEHLGQAAAFQQVGAAFNQHLMAQRPRLPVLPTPVMPIPGAAPLPMNQPMVPGIRPPV LPRPLPGPPGGFGLCSCSRHATNGGTTRCSFLAWSNKWCSTASYIGSPDNSSWNCNDT NFF" CDS join(<9402470..9402497,9402849..9402883,9402966..9403245, 9404220..9404368) /locus_tag="TCM_043735" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein isoform 4" /protein_id="EOY19067.1" /db_xref="Phytozome:POPTR_0003s05710.1" /db_xref="TAIR:AT4G03120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EED5" /translation="DLTFSKSCLVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRI KEHLGQAAAFQQVGAAFNQHLMAQRPRLPVLPTPVMPIPGAAPLPMNQPMVPGIRPPV LPRPLPGPPGGFGLCSCSRHATNGGTTRCSFLAWSNKWCSTASYIGSPDNSSWNCNDT NFF" CDS join(<9402470..9402497,9402849..9402883,9402966..9403240, 9404221..9404368) /locus_tag="TCM_043735" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein isoform 5" /protein_id="EOY19066.1" /db_xref="Phytozome:POPTR_0003s05710.1" /db_xref="TAIR:AT4G03120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EED5" /translation="DLTFSKSCLVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRI KEHLGQAAAFQQVGAAFNQHLMAQRPRLPVLPTPVMPIPGAAPLPMNQPMVPGIRPPV LPRPLPGPPGGLCSCSRHATNGGTTRCSFLAWSNKWCSTASYIGSPDNSSWNCNDTNF F" CDS join(9402490..9402497,9402603..9402645,9402842..9402883, 9402966..9403236,9404221..9404427,9405117..9405133) /locus_tag="TCM_043735" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29647.m002039" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein isoform 2" /protein_id="EOY19063.1" /db_xref="TAIR:AT4G03120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EED5" /translation="MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQ QTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLMAQRPRLPVLPTPVMPIPGAAPLPMNQ PMVPGIRPPVLPRPLPGPPGYVPAPGMPPMVAPPGAPSLPGQINGVPRPPTLAPLTTV PGTATTPTSSNAAPTMVTPASYQTNPAAPTGNQSQ" CDS join(9402490..9402497,9402603..9402645,9402842..9402883, 9402966..9403236,9404221..9404483) /locus_tag="TCM_043735" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29647.m002039" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein isoform 1" /protein_id="EOY19062.1" /db_xref="TAIR:AT4G03120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84VV2" /translation="MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQ QTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLMAQRPRLPVLPTPVMPIPGAAPLPMNQ PMVPGIRPPVLPRPLPGPPGYVPAPGMPPMVAPPGAPSLPGQINGVPRPPTLAPLTTV PGTATTPTSSNAAPTMVTPASYQTNPAAPTGGGFDNFNANAQPSEANH" CDS join(9402547..9402645,9402842..9402883,9402966..9403236, 9404221..9404427,9405117..9405133) /locus_tag="TCM_043735" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29647.m002039" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein isoform 3" /protein_id="EOY19064.1" /db_xref="TAIR:AT4G03120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EED5" /translation="MKNFINLCCIYFIWIQIFRYYCDYCDTYLTHDSPSVRKQHNAGY KHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLMAQRPRLPVLP TPVMPIPGAAPLPMNQPMVPGIRPPVLPRPLPGPPGYVPAPGMPPMVAPPGAPSLPGQ INGVPRPPTLAPLTTVPGTATTPTSSNAAPTMVTPASYQTNPAAPTGNQSQ" gene complement(9408714..9411561) /locus_tag="TCM_043737" /note="dbxref CacaoGD:Thecc1EG043737" mRNA complement(join(9408714..9409048,9409162..9409234, 9411182..9411256,9411501..9411561)) /locus_tag="TCM_043737" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3801t1" CDS complement(join(9408868..9409048,9409162..9409234, 9411182..9411256,9411501..9411519)) /locus_tag="TCM_043737" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19068.1" /translation="MSKFVKAVGYEDPRVTLHFGDGVAYLEAVPQDLITATHYSFLAR HINLMDFIQLDLDHPNTNILNPIDINDSCCKSKRPLRLFYNSDILSVAFCLSKHYGFY PCLMVSCSEEPWI" mobile_element complement(9409035..9410891) /note="source:CACAO_M_E84592_F4_scaffold_10 1 1857" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9411743..9413252) /note="source:CACAO_M_E84591_F17_scaffold_10 1 1510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9416979..9428275) /note="source:INTACT136_F150_scaffold_10-int 1 11297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9429519..9429672) /note="source:scaffold_9_CACTA_0937 9919 10050" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9433277..9434278 /note="source:INTACT490_F228_scaffold_6-int 303 1201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9435819..9437662 /note="source:INTACT189_F49_scaffold_5-int 1 1842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9439920..9440920 /note="source:CACAO_M_E48206_F72_scaffold_6 1 1008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9440913..9447579 /note="source:INTACT490_F228_scaffold_6-int 1474 8162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9446473..9449517) /note="source:INTACT357_F72_scaffold_9-int 1 3066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9449559..9449813) /note="source:INTACT453_F4_scaffold_9-int 18577 18803" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9449776..9452734) /note="source:scaffold_6_CACTA_0699 15267 18228" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9452735..9453251) /note="source:CACAO_M_S_E84261_F4_scaffold_6 1125 1639" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9453259..9454037) /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 784" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(9453901..9455574) /locus_tag="TCM_043740" /note="dbxref CacaoGD:Thecc1EG043740" mRNA complement(join(9453901..9454186,9454867..9454935, 9455333..9455574)) /locus_tag="TCM_043740" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4444t1" CDS complement(9453993..9454160) /locus_tag="TCM_043740" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19069.1" /translation="MHHSKDASFKGSFLIVFNMGRELREHPVDAKFESYHLGCMGCWD KLYNQLGLVKA" gene 9460072..9460647 /locus_tag="TCM_043741" /note="dbxref CacaoGD:Thecc1EG043741" mRNA 9460072..9460647 /locus_tag="TCM_043741" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g03690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042648t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06210.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage" CDS 9460116..9460472 /locus_tag="TCM_043741" /note="paralog of Thecc1EG042648t1" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative" /protein_id="EOY19070.1" /db_xref="Phytozome:POPTR_0008s06210.1" /db_xref="TAIR:AT5G05960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M329" /translation="MGAPMKYICVLMFLVVLSIAGFNGVDGYGPCGKHNIEKEAEKLA PCTKAAQDLKAPVSKSCCTVMEKKLKNPGCLCAIMLSHTAKNAGVKPEVAVTIPKRCN IPVRPVGHKCGAFPLV" gene complement(9461337..9465544) /locus_tag="TCM_043742" /note="dbxref CacaoGD:Thecc1EG043742" mRNA complement(join(9461337..9462572,9464180..9465544)) /locus_tag="TCM_043742" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:28037.m000045" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041475t1" /inference="similar to AA sequence:ricco:28037.m000045" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3814t3" CDS complement(join(9461771..9462572,9464180..9464991)) /locus_tag="TCM_043742" /note="dbxref ricco:28037.m000045; paralog of Thecc1EG041475t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY19071.1" /db_xref="TAIR:AT3G44610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T6K2" /translation="MNSNYGSTKNQKWELTKWVLHGPMVQHQTLPHGPTSFCRPMLSF LTLRKPLPLSLSFPILILHIRSLFHQQGWLQPSITMQQCVDDLADDLDNLSFTSTTTT STTATTSTTVPETKRSTSSGSEATWTPSSLLSTSTKHHHAPPRDPCWHAIQQVKSENN VLTLADLRFVHRLGSGDIGSVYLVELKGASGCFFAAKVMDKKELVSRNKESRATIERE ILESLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDRRFHETAVRFYASE VVVALEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKSDNPTSTAQLVSDQNTS ATNSSSDPAADPPPFANSSCILPNCIVPAVSCLHPKSRKRRKKSMHRGDLEIVAEPVD VRSMSFVGTHEYLAPEIVSGEGHGNAVDWWTLGIFMFEMFYGFTPFKGIDHELTLANI VARALEFPKEPSVPAPAKDLIAQLLVKDPSRRMGSTMGSTAIKHHHFFNGVNWALLRC TTPPYTPRPVTHRDFLAVDDSTHNSVEYY" gene complement(9466203..9482334) /locus_tag="TCM_043743" /note="dbxref CacaoGD:Thecc1EG043743" mRNA complement(join(9466203..9466885,9467286..9467334, 9467422..9467915,9469506..9469717,9469819..9469984, 9473544..9474346,9474857..9475193,9482203..9482334)) /locus_tag="TCM_043743" /product="Alkaline/neutral invertase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031374001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041478t1" /inference="similar to AA sequence:ricco:29766.m000116" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01857t00001" mRNA complement(join(9466203..9466885,9467286..9467334, 9467421..9467596,9469506..9469717,9469819..9469984, 9473544..9474346,9474857..9475044)) /locus_tag="TCM_043743" /product="Alkaline/neutral invertase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031374001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041478t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s02460.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3857t1; inference alignment:Newbler:10:TSA:cgbaL_g01857t00001" CDS complement(join(9466559..9466885,9467286..9467334, 9467421..9467596,9469506..9469717,9469819..9469984, 9473544..9474254)) /locus_tag="TCM_043743" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041478t2" /codon_start=1 /product="Alkaline/neutral invertase isoform 2" /protein_id="EOY19073.1" /db_xref="Phytozome:POPTR_0008s02460.1" /db_xref="TAIR:AT5G22510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BK02" /translation="MSMGTSEAVLHVLSGAVPRLFSSDLCSSNLDLVFSSKYHIKSVN KKGSSYMQRFKCLRLARCQIGSYMCKPLGGGLYGNRAIGRLKLLRCKCERAESVSGVG MDEGNGAWFVDSAKKLNLNGSINSPNILEFEAVEQLKREKEGLTSNGTVGTGTSTFHK ASVDSIEDEAWELLRDSMVYYCGSPIGTIAANDPTSSNVLNYDQVFIRDFIPSGIAFL LKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLD PDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERVDVQTGIKMILRLCLADGF DMFPTLLVTDGSCMIDRRMGIHGHPLEIQEICGPLLVVLQQLISHMLYWISSKLNGQI WWPTCHLRSATQLLKVGSGRSLQAVIPRTRPWSYHNGGSWPTLLWQLTVACMKMNRPE IAAKAISVAEKRISRDKWPEYYDTKKARFIGKQSHLFQTWSIAGYLVAKLLLADPNAA KILTTEEDSELVNAFSCMISANPRRKRGPKSLKQTYIV" CDS complement(join(9466559..9466885,9467286..9467334, 9467422..9467915,9469506..9469717,9469819..9469984, 9473544..9474254)) /locus_tag="TCM_043743" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29766.m000116; paralog of Thecc1EG041478t1" /codon_start=1 /product="Alkaline/neutral invertase isoform 1" /protein_id="EOY19072.1" /db_xref="TAIR:AT5G22510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A0PAD6" /translation="MSMGTSEAVLHVLSGAVPRLFSSDLCSSNLDLVFSSKYHIKSVN KKGSSYMQRFKCLRLARCQIGSYMCKPLGGGLYGNRAIGRLKLLRCKCERAESVSGVG MDEGNGAWFVDSAKKLNLNGSINSPNILEFEAVEQLKREKEGLTSNGTVGTGTSTFHK ASVDSIEDEAWELLRDSMVYYCGSPIGTIAANDPTSSNVLNYDQVFIRDFIPSGIAFL LKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLD PDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERVDVQTGIKMILRLCLADGF DMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLTPEDGSADLIRALNN RLVALSFHIREYYWIDMRKLNEIYRYKTEEYSYDAVNKFNIYPDQISPWLVEWMPNKG GFLIGNLQPAHMDFRFFSLGNLWAVASGLATTDQSHAILDLIEAKWADLVADMPFKIC YPALEGREWQIITGSDPKNTPWSYHNGGSWPTLLWQLTVACMKMNRPEIAAKAISVAE KRISRDKWPEYYDTKKARFIGKQSHLFQTWSIAGYLVAKLLLADPNAAKILTTEEDSE LVNAFSCMISANPRRKRGPKSLKQTYIV" mRNA complement(join(<9467569..9467915,9469506..9469717, 9469819..9469984,9473544..9474340,9474857..9475166)) /locus_tag="TCM_043743" /product="Alkaline/neutral invertase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031374001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041478t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s02460.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc399t1; inference alignment:Newbler:10:TSA:cgbaL_g01857t00001" CDS complement(join(<9467571..9467915,9469506..9469717, 9469819..9469984,9473544..9474254)) /locus_tag="TCM_043743" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041478t2" /codon_start=1 /product="Alkaline/neutral invertase isoform 3" /protein_id="EOY19074.1" /db_xref="Phytozome:POPTR_0008s02460.1" /db_xref="TAIR:AT5G22510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A0PAD6" /translation="MSMGTSEAVLHVLSGAVPRLFSSDLCSSNLDLVFSSKYHIKSVN KKGSSYMQRFKCLRLARCQIGSYMCKPLGGGLYGNRAIGRLKLLRCKCERAESVSGVG MDEGNGAWFVDSAKKLNLNGSINSPNILEFEAVEQLKREKEGLTSNGTVGTGTSTFHK ASVDSIEDEAWELLRDSMVYYCGSPIGTIAANDPTSSNVLNYDQVFIRDFIPSGIAFL LKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLD PDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERVDVQTGIKMILRLCLADGF DMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLTPEDGSADLIRALNN RLVALSFHIREYYWIDMRKLNEIYRYKTEEYSYDAVNKFNIYPDQISPWLVEWMPNKG GFLIGNLQPAHMDFRFFSLGNLWAVASG" gene 9470923..9473215 /locus_tag="TCM_043744" /note="dbxref CacaoGD:Thecc1EG043744" mRNA join(9470923..9471046,9471124..9471598,9471858..9471931, 9472152..9472238,9472339..9472620,9472757..9473215) /locus_tag="TCM_043744" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS join(9471379..9471598,9471858..9471931,9472152..9472238, 9472339..9472620,9472757..9472993) /locus_tag="TCM_043744" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19075.1" /translation="MSKEDYLSQPFEYNAVCLLEEVLWEVVDETTPHGLWRKLEKIYL TKSLTNQLYLKQRLYRLRVKEGMFMKDHLTNIVTGWGFEDDGLSFTVNTNKPSKEVGY EFSEKDGLLDVCDITHVYFKVFGSEVSPLLRSALVRLGRMVGLSYVRLALSGFASNVV PRLDDLWMWPSLLLVKSVAFHTFRKNRNSLGGLPNCDIESIVCLEKGESRKFCMGCIV ENYVGSSPSSAMVVGTPSSWLGYSGEHHCCSLVQAMDGKLDGCIFLKYQLCVRGLQCQ FLLSSKDVMGECKTKEVFKELFA" mobile_element complement(9477558..9480520) /note="source:CACAO_M_E84582_F7_scaffold_10 1 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9481264..9483292 /note="source:CACAO_M_E34043_F82_scaffold_4 1 1947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9483393..9484728 /note="source:CACAO_M_E51854_F82_scaffold_7 8898 10236" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9487378..9487460 /note="source:scaffold_6_CACTA_0702 12770 12852" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9493300..9493442 /note="source:INTACT1432F_F101_scaffold_9-int 8130 8284" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 9496520..9496539 /note="source:CACAO_M_E69551_F193_scaffold_9 56 195" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9496540..9496642) /note="source:INTACT336_F12_scaffold_2-int 14886 14997" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9496767..9515291 /locus_tag="TCM_043746" /note="dbxref CacaoGD:Thecc1EG043746" mRNA join(9496767..9496772,9513287..9513610,9515241..9515291) /locus_tag="TCM_043746" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013376t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" mobile_element complement(9503974..9505477) /note="source:CACAO_M_E71671_F17_scaffold_10 23 1531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9506684..9507944 /note="source:CACAO_M_S_E4534_F4_scaffold_1 3529 4770" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9507940..9507969 /note="source:INTACT505_F28_scaffold_3-int 14450 14479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9507969..9508663) /note="source:CACAO_M_E53135_F19_scaffold_8 2500 3198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9508955..9510225) /note="source:scaffold_6_CACTA_0702 4939 6193" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9511823..9512003 /note="source:scaffold_8_CACTA_0860 11401 11580" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9512019..9512630 /note="source:scaffold_5_CACTA_0591 7191 7799" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9512609..9512821 /note="source:CACAO_M_S_E101631_F270_scaffold_9 19548 19759" /mobile_element_type="retrotransposon:LTR/Copia" CDS 9513292..9513558 /locus_tag="TCM_043746" /note="paralog of Thecc1EG013376t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19076.1" /translation="MLPVKHFNDVTKDRAVLLYSIVTRKSIGIGQLIFNNIILTACSP RDGLLYPSLITTLSHQAGVVYSPNKELLHPKIPLDVGIIHKLCM" mobile_element complement(9513779..9515079) /note="source:INTACT639F_F363_scaffold_5-int 2105 3394" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9517862..9518758 /note="source:CACAO_M_E23389_F368_scaffold_4 438 1215" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9519578..9520713 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 6174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9520705..9520763 /note="source:CACAO_M_E58601_F7_scaffold_9 8814 8871" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9520711..9522298 /note="source:CACAO_M_S_E4534_F4_scaffold_1 2501 4076" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9521644..9527873) /note="source:INTACT595_F266_scaffold_7-int 2886 8451" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9527874..9530480) /note="source:CACAO_M_S_E7105_F60_scaffold_2 6705 9283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9530487..9531238) /note="source:CACAO_M_E24389_F60_scaffold_4 5434 6182" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9531239..9533097) /note="source:CACAO_M_E84574_F4_scaffold_10 1 1859" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9533098..9537884) /note="source:CACAO_M_E24389_F60_scaffold_4 634 5438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9533098..9533170 /note="source:CACAO_M_E84368_F4_scaffold_10 13275 13351" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9537888..9538038 /note="source:CACAO_M_E53420_F60_scaffold_8 1564 1714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9538039..9538166 /note="source:scaffold_5_CACTA_0585 11396 11523" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9538237..9539149 /note="source:INTACT570_F260_scaffold_5-int 8751 9685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9538880..9539507) /note="source:scaffold_2_CACTA_0262 7055 7690" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9539137..9539610) /note="source:CACAO_M_S_E101631_F270_scaffold_9 17527 18004" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9539285..9541357 /note="source:scaffold_6_CACTA_0702 9459 11543" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9541402..9542550 /note="source:scaffold_6_CACTA_0711 1558 3594" /mobile_element_type="transposon:TIR/CACTA" gene 9558651..9563734 /locus_tag="TCM_043753" /note="dbxref CacaoGD:Thecc1EG043753" mRNA join(9558651..9559866,9560083..9561399,9562364..9562475, 9562820..9563734) /locus_tag="TCM_043753" /product="Enhancer of polycomb-like transcription factor protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24240.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b042218t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3881t1" mRNA join(9558651..9559866,9560083..9561399,9562364..9562475, 9562871..9563734) /locus_tag="TCM_043753" /product="Enhancer of polycomb-like transcription factor protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24240.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3881t1" CDS join(9559231..9559866,9560083..9561399,9562364..9562475, 9562820..9563109) /locus_tag="TCM_043753" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Enhancer of polycomb-like transcription factor protein, putative isoform 2" /protein_id="EOY19078.1" /db_xref="Phytozome:POPTR_0008s02470.1" /db_xref="TAIR:AT5G04670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5W9" /translation="MPSVGMRRTTRVFRMVKSSEVARVLRSGRRLWPDSGEAKPKRLA NEGDENYNLMKKAPKSEVNGVAAEVSGRPKRLGNEENPRKQSRKMKAGAFNTSGSVDK MFGIVYTRKRKRNGVQNGHLSGNSGQGNYGKKISRRQAIENRNTNEDVEEPKMFSFVV ENGDCNGCFSNFLILVLGYVKRAEVRLSELAAFLMSQPISSVYSSNGVNFFWGPRNRT GICKFFGAKDSIPLFSLDFSAVPRYFLYMHYSKVLRLKRIQIVPVNSDEIVSDSEEDE PCVTSVVDVCKSTSGNAAVEIDNLGSKVVLHPSVRASKLTGRNAQCRNGLSSRSIQKR RSSLRRRRARNPSIVGIHKANGALMSDLISSRRNGIPFSSVVSKNKLRSSVRNSSVAN VSDVGSSISDLMQNVDSSQCSANILVIEADRCYREEGAIVTLELSASREWLLVVKKGS STKFACKADKFMRPSSCNRFTHAIIWTGDDNWKLEFPNRQDWIIFKDLYKECSERNVP ASTVKAIPVPGVHEVPGYEDRRSVPFCRPDFYISLDGDEVSRALAKRTANYDMDSEDE EWLKKFNNEFFSGNGHCEHLSEDCFELMVDAFEKAYFCSPDDYSNENAAAHLCLDLGT RGLVEAVHTYWLRKRKQRRSALLRVFQGHQVKKAPLVPKPFLRKRRSFKRQASHGRGK QPYLLQGPRFRYNAETSIICNCAALAAERDSMAEQNAMLKLEEARVSASRSVELAVLK RQRTQLLMENADLATYKAMMALRIAEAARFTESSDVAVAHFFDL" CDS join(9559231..9559866,9560083..9561399,9562364..9562475, 9562871..9563109) /locus_tag="TCM_043753" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Enhancer of polycomb-like transcription factor protein, putative isoform 1" /protein_id="EOY19077.1" /db_xref="Phytozome:POPTR_0008s02470.1" /db_xref="TAIR:AT5G04670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5W9" /translation="MPSVGMRRTTRVFRMVKSSEVARVLRSGRRLWPDSGEAKPKRLA NEGDENYNLMKKAPKSEVNGVAAEVSGRPKRLGNEENPRKQSRKMKAGAFNTSGSVDK MFGIVYTRKRKRNGVQNGHLSGNSGQGNYGKKISRRQAIENRNTNEDVEEPKMFSFVV ENGDCNGCFSNFLILVLGYVKRAEVRLSELAAFLMSQPISSVYSSNGVNFFWGPRNRT GICKFFGAKDSIPLFSLDFSAVPRYFLYMHYSKVLRLKRIQIVPVNSDEIVSDSEEDE PCVTSVVDVCKSTSGNAAVEIDNLGSKVVLHPSVRASKLTGRNAQCRNGLSSRSIQKR RSSLRRRRARNPSIVGIHKANGALMSDLISSRRNGIPFSSVVSKNKLRSSVRNSSVAN VSDVGSSISDLMQNVDSSQCSANILVIEADRCYREEGAIVTLELSASREWLLVVKKGS STKFACKADKFMRPSSCNRFTHAIIWTGDDNWKLEFPNRQDWIIFKDLYKECSERNVP ASTVKAIPVPGVHEVPGYEDRRSVPFCRPDFYISLDGDEVSRALAKRTANYDMDSEDE EWLKKFNNEFFSGNGHCEHLSEDCFELMVDAFEKAYFCSPDDYSNENAAAHLCLDLGT RGLVEAVHTYWLRKRKQRRSALLRVFQGHQVKKAPLVPKPFLRKRRSFKRQASHGRGK QPYLLQALAAERDSMAEQNAMLKLEEARVSASRSVELAVLKRQRTQLLMENADLATYK AMMALRIAEAARFTESSDVAVAHFFDL" gene complement(9563736..9586586) /locus_tag="TCM_043754" /note="dbxref CacaoGD:Thecc1EG043754" mRNA complement(join(9563736..9564014,9570098..9570648, 9571452..9571504,9586480..9586586)) /locus_tag="TCM_043754" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element complement(9566838..9566898) /note="source:CACAO_M_E14113_F106_scaffold_3 23358 23424" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9568156..9569842) /note="source:CACAO_M_S_E144751_F3_scaffold_10 1 1687" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(9570524..9570648,9571452..9571504, 9586480..9586517)) /locus_tag="TCM_043754" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19079.1" /translation="MREGRLNQIEFNRRDVKLMQEPCEVSVNISDVTLIGLITSSYKC PLRGLKGILDLDFVTTIAVVEEELFKK" mobile_element complement(9571385..9574498) /note="source:CACAO_M_E84573_F306_scaffold_10 1 3114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9575048..9577123 /note="source:CACAO_M_E14113_F106_scaffold_3 10690 12777" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(9577992..9585183) /locus_tag="TCM_043755" /note="dbxref CacaoGD:Thecc1EG043755" mRNA complement(join(9577992..9578726,9580517..9580641, 9580824..9580984,9584687..9585183)) /locus_tag="TCM_043755" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is utrpoor_complete" CDS complement(join(9578609..9578726,9580517..9580641, 9580824..9580984,9584687..9584795)) /locus_tag="TCM_043755" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19080.1" /translation="MMHACRQQKFNSNFTTLWHKRFGHCNYNSLMQLSNLGLLGLSEL CSLSSYVDHGPKKLGRDTLSVRTLSSMTMRVGIGSKVKLQFLMNLLKELNMIARNKTQ SLVNRPRNRQVIRVKWIFKRELNPNCSLNSASSKRHDQLQTAQTIDIVNMITSDELET SKGANQVGTL" mobile_element complement(9578968..9579346) /note="source:CACAO_M_E84368_F4_scaffold_10 12188 12579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9579290..9579450) /note="source:CACAO_M_S_E1495_F60_scaffold_1 515 690" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9580910..9581605) /note="source:CACAO_M_E84569_F318_scaffold_10 1635 2330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9582284..9583917) /note="source:CACAO_M_E84569_F318_scaffold_10 1 1634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9585007..9585021) /note="source:INTACT167_F5_scaffold_2-int 14937 14951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9585022..9585084) /note="source:CACAO_M_S_E99214_F90_scaffold_9 1173 1234" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9585085..9586118) /note="source:INTACT167_F5_scaffold_2-int 13885 14936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9586205..9586815 /note="source:CACAO_M_E3884_F22_scaffold_1 12529 13129" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9586681..9605723 /locus_tag="TCM_043756" /note="dbxref CacaoGD:Thecc1EG043756" mRNA join(9586681..9586836,9589986..9590572,9596571..9596998, 9597159..9597279,9597460..9597548,9597720..9597804, 9598070..9598360,9598457..9598547,9599068..9599968, 9600063..9600223,9600412..9600515,9600612..9600774, 9600855..9600989,9601335..9601483,9601743..9602079, 9602179..9602525,9602635..9602718,9602801..9602934, 9603042..9603269,9603805..9603976,9604125..9604379, 9604528..9605723) /locus_tag="TCM_043756" /product="Pleiotropic drug resistance 6" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040660" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022498t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02480.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage" mobile_element complement(9587360..9589215) /note="source:CACAO_M_S_E144743_F4_scaffold_10 1 1856" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9589527..9592520) /note="source:CACAO_M_S_E144741_F89_scaffold_10 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(9596604..9596998,9597159..9597279,9597460..9597548, 9597720..9597804,9598070..9598360,9598457..9598547, 9599068..9599968,9600063..9600223,9600412..9600515, 9600612..9600774,9600855..9600989,9601335..9601483, 9601743..9602079,9602179..9602525,9602635..9602718, 9602801..9602934,9603042..9603269,9603805..9603976, 9604125..9604379,9604528..9604797) /locus_tag="TCM_043756" /note="paralog of Thecc1EG022498t1" /codon_start=1 /product="Pleiotropic drug resistance 6" /protein_id="EOY19081.1" /db_xref="Phytozome:POPTR_0008s02480.1" /db_xref="TAIR:AT2G36380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7PC84" /translation="MASALSGDDLARSMSSPSISRKMSLGSGSRRGWASASIREAWNS QTDVFQRSGREEDEEELKWAAIERLPTYDRLRKGMLKHVLDEGKVGYEEVDITNLDMQ DKKNLMQSVLRVVEEDNERFLLRLRERNDRVGIDVPRIEVRFEHLSIEGDAYLGTRAL PTLLNATLNTIEGALGLIKLFPSKKRVVNILRDVSGIVKPSRMALLLGPPGSGKTTLL QALAGKTDTDLRVSGKITYCGHEFHEFFPQRTSAYISQHDLHHGEMTVRETLDFSGRC LGVGTRYDLLAELSRREKQAGIKPDPEIDAFMKATAMAGQKTSLVTDYVLKILGLDIC SDIMVGDEMRRGISGGQKKRVTTGEMLVGPAKALYMDEISTGLDSSTTFQIVRFMKQM VHIMDVTMIISLLQPAPETYDLFDDIILLSEGKIVYQGPRENVLEFFESVGFKCPERK GVADFLQEVTSRKDQQQYWCRKNEPYQYISVPEFVEHFNSFHIGQKLDDELRIPYDKS KAHPAALVKEKYGISNWELFKACFAREWLLMKRNSFVYIFKTTQITIMSVIAFTVFFR TKMKAGHISNGVKFYGALFFSLINVMFNGMAELALTIFRLPVFFKQRDFLFYPAWAFA LPIWVLRIPLSLLESGIWIILTYYTIGFAPAASRFFRQFLAFFGIHQMALSLFRFIAA VGRTQVVANTLGTFTLLVVFVLGGFVVAKDDIKPWMIWGYYVSPMSYGQNAIVITEFL DKRWSAPYVSLNESTTVGKILLKSRGMYTEEHWYWICVAALLGFSLLFNLCFIAALTY LNPLGDSKSVVLSEDDESKSKKQSSSDGQHNLRSIEISKPSTAPLFEGTDDMPLKNTS DNSILGAADQAPTKRGMVLPFQPLSLAFNHVNYYVDMPAEMKSQGIEETRLQLLRDVS GALRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQETFARVSGYC EQNDIHSPHVTVYESLVYSAWLRLAKEVNAETRKAFAAQSSRYDLSLVLYSLQQMFVE EVMELVELNLLRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQAIYAGPLGRHSHKL IEYFEAVPGVPKIKEGYNPATWMLEISSTAVEAQLDVDFSEIYAKSELYRKNEKLIQD LSTPVPGTKDLHFSTKYSQDFFTQCRACFWKQHWSYWRNPQYNAIRFFMTVIVGIIFG MIFWDKGDKIHKQQDLMNLLGAMYSAVLFLGATNTSAVQSVVAIERTVFYRERAAGMY SPLPYAFSQVAIEAIYVSIQTLVYSLLLYSMIGFHVDVGKFLLFYYFILMCFMYFTLY GMMLVALTPNHQFAAIVMSFFLSFWNLFSGFLIPRTEIPIWWRWYYWASPVAWTIYGL VTSQVGDQLALVDIPGELPLTVKDYLEAHLGFDYSFLPAVVAAHIGWVLLFLFVFAYG IKFLNFQRR" mobile_element 9601138..9601181 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4124 4167" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9601143..9601226) /note="source:INTACT146F_F14_scaffold_2-int 13439 13496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9606660..9606679) /note="source:CACAO_M_S_E64832_F14_scaffold_5 1204 1231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9606680..9608582) /note="source:CACAO_M_E5702_F90_scaffold_2 11776 13689" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9608606..9608657 /note="source:CACAO_M_E10693_F272_scaffold_2 1378 1429" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9608658..9611566) /note="source:CACAO_M_E5913_F7_scaffold_2 1 2903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9611586..9616734) /note="source:CACAO_M_E45234_F22_scaffold_6 3102 8255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9619755..9622481) /note="source:CACAO_M_S_E99214_F90_scaffold_9 1 2752" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9622482..9624932 /note="source:CACAO_on_E193_scaffold_6 120 2575" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9627581..9627668 /note="source:CACAO_M_S_E34046_F60_scaffold_4 8563 8649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9627658..9629578) /note="source:CACAO_on_S_E176_scaffold_5 3832 5813" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(9629549..9632347) /note="source:CACAO_Mutator_E1149_scaffold_5 6929 9657" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(9630721..9634478) /note="source:scaffold_1_CACTA_0009 3446 7387" /mobile_element_type="transposon:TIR/CACTA" gene complement(9635156..9641577) /locus_tag="TCM_043762" /note="dbxref CacaoGD:Thecc1EG043762" mRNA complement(join(9635156..9635971,9636260..9636570, 9638720..9641577)) /locus_tag="TCM_043762" /product="Suppressor of gene silencing 3, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24220.1" /inference="similar to AA sequence:ricco:29766.m000123" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8025t6" CDS complement(join(9635604..9635971,9636260..9636570, 9638720..9640977)) /locus_tag="TCM_043762" /note="dbxref ricco:29766.m000123" /codon_start=1 /product="Suppressor of gene silencing 3, putative" /protein_id="EOY19082.1" /db_xref="TAIR:AT3G22430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL25" /translation="MQSRRDEEYRKLSPTVKLRSQHMAAAEAGHQDAHPNARHEVINN QSPQPRGRGSYSPNTLDAFRRGGLVRERMSRSMDGRDSYGRHLSGGSTERVRSRSPPY EQMRKRSHYDEGVVNRKYDYVEPVGFDDNTNSRVRSVYTYDHGTSRTCKEKDYMENRV AGVDGHVTMDQKLAPLEDFALRGSHRLPQDLDPRLNYAETSGQLPLSSRGMDVGQYEQ EKVRHREPIPSNKMMNMESYREDKSMFHSQNVAYSMAVTSHSKEFMGTSQLKDFAGTS PGIPKSGFLRSYQDDAPLPVSEEYPRISGKLTEPVGYNKYDQRPLIASVRDPETTRRD MTIHQQVANSPSRAEYEDYLYRKPRAIASNNHGYPADGIKRMMPSQSGVSYEHASIDY GHRDMPKPNILHCVVDRIDNTNDSCGNLRKGVIWDNHALQKQINSDYIDMSSSYASMQ GGEYLGSEHTHVKFGRRLPQEYEMSHLDALHDRQVSNLRSDNGFGKGAGPDFRKERLK DSSANYDAEQCRLGLRAQRMEEELDMHSDRIFKRKYLMEEDVNRPSSETIVSSKLHAP GDFGGPYVREEQIDEDIIGLHASRTKGYGHNEYRQVGRTYDGRDHCGDLASDDWFTSQ DSLAHSERVPVRYYKNSGKFIRGNPRAGSFVSHTSHHNDRRSNLYKQNKVRKRNDDYD EYVNANDDDMTEDLVNHAEAELSEDSEEFKQLVHEAFLKYSKKLNLNQSVRRRYKEQG HAGSLFCIVCGRSYSKEFMDTQRLVTHAFMSHKVGLRAQHLGLHKAICVLLGWDSIAP PDTVTWVPHILPEAEALAQKEDLVLWPPIVVIHNISMANNDPQEQKVVPIEGVQAFLR DKGFIGGKITVCLGRPADQSIMVVKFLGTFTGLAMAERLHKYFVGQDRGRVDFQQITS NNGKSSVGEMQIQVDKLEEQLLYGYMAIAEDLDKLDFHNRKWSLIKSKKEIQDLANDP VKIDER" mobile_element 9643375..9644770 /note="source:CACAO_M_E33422_F33_scaffold_4 1 1380" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9643489..9665529) /locus_tag="TCM_043763" /note="dbxref CacaoGD:Thecc1EG043763" mRNA complement(join(9643489..9643707,9653300..9653708, 9654675..9654797,9656345..9656575,9657598..9657886, 9657995..9658986,9659097..9659372,9659672..9660323, 9660524..9661131,9661966..9662049,9665518..9665529)) /locus_tag="TCM_043763" /product="DNA/RNA polymerases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400069104.8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022972t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400029923" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.36 coverage" mobile_element 9652767..9654222 /note="source:INTACT139F_F15_scaffold_2-int 889 2347" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(9653683..9653708,9654675..9654797, 9656345..9656575,9657598..9657886,9657995..9658986, 9659097..9659372,9659672..9660323,9660524..9660655)) /locus_tag="TCM_043763" /note="paralog of Thecc1EG022972t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY19083.1" /db_xref="Phytozome:PGSC0003DMP400029923" /db_xref="UniProtKB/TrEMBL:UniRef50_E4Z8P7" /translation="MIFDNGCSQGNRETNSKALQGFGLTFRAISVYRDTAAVVTGSRG IIMPPRRGRPPLTRSVGRGRGRSQRHQPDTVEEESAASTIRAAPAAEQADSPPHPPSP QPPTGIPAMPTEAAQALAAFFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVP PVVPPATPLVPPPIQDVSISKKLKEARQLGCVSFTGELDATVAKDWINQVSETLSDMG LDDDMKLMVATRLLEKRARTWWNSVKSRSATPQTWSDFLREFDVIGREPHKEVVQMAL RAEKLVTENRRIRTEFAKRRNPGMSSSQPVKRGKDSATSGSTTSVSVTSPRPPFPPSQ QRPSRFSRSAMTGSRKSLGVRTSHCSCIISTSSHRYTEERFFWVTTETRSTIRSGVES NTPSHPPSRPQTRTATRVFAMTEDEAQVRPGAVTGTMSLFDKDAYVLIDSGSDRSYVS TTFASITDRNLSPLEEEIVVHTPLGEQLIRNTCYRDCGVRVGEEEFRGDLIPLEILDF DLILGMDWLTAHRANVDCFRKEVVLRNSEGAEIVFVGERRVLPSYVISAIKVSKLVQK GYPTYLAYVIDTSKGEPKLEDVPIVSEFSDVFPDNLPRIPPNRELEFPIDLLPSTVPI SIPPYRMAPAELKELKAQLQDLVDKGFIRPSISPWGAPVLFVKKKDGTLRLCIDYRQL NRLRIKEQDVPKTAFKTRYGHYEFLVMPFGLTNAPAVFMDLMSRVFHPYLDKFVIVFI DDILVYSKNDDEHAAHLRIVLQTLRERQLYAKFSKCEFELADALSRKSSSSLATLRSS YFPMLLEMKSLGIQLNNGEDGTLLASFVVRPSLLNHIRELQKFDDWLKQEVQKLQDGK ASVTTRNLPQAHDNRRDVPIDTHYPECQPEPRKAYISVSFLSFHGNPSLQ" mobile_element complement(9654508..9654804) /note="source:INTACT901F_F95_scaffold_6-int 11838 12134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9654805..9654864 /note="source:CACAO_M_E14081_F316_scaffold_3 13290 13621" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9656328..9656824 /note="source:CACAO_M_E49857_F85_scaffold_7 11467 11963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9657578..9657622) /note="source:CACAO_M_E49857_F85_scaffold_7 9112 9155" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9657605..9659552) /note="source:CACAO_M_E12297_F14_scaffold_3 9978 11926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9659653..9659983) /note="source:CACAO_M_E12297_F14_scaffold_3 9645 9975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9660084..9663240 /note="source:INTACT215_F33_scaffold_4-int 7620 10574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9663032..9663243) /note="source:CACAO_M_E12297_F14_scaffold_3 6343 6554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9663199..9663258 /note="source:CACAO_M_E14081_F316_scaffold_3 13581 13639" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9664484..9664937) /note="source:CACAO_M_E57385_F197_scaffold_9 1250 1709" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9665062..9665626) /note="source:CACAO_M_E57385_F197_scaffold_9 432 1136" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9665617..9666212 /note="source:CACAO_M_E84995_F60_scaffold_10 10711 11320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9666213..9668926) /note="source:CACAO_M_E84556_F73_scaffold_10 1 2714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9668807..9668943) /note="source:CACAO_M_E14081_F316_scaffold_3 6479 6617" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9668921..9669046) /note="source:CACAO_M_S_E34046_F60_scaffold_4 17689 17814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9669711..9669763) /note="source:CACAO_M_E14081_F316_scaffold_3 15246 15299" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9670224..9673162) /note="source:CACAO_M_E57385_F197_scaffold_9 1804 4717" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9673382..9674071) /note="source:CACAO_M_E59600_F12_scaffold_9 3585 4284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9675839..9676335 /note="source:CACAO_M_E49298_F73_scaffold_7 2236 2732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9677079..9677787 /note="source:INTACT1818F_F49_scaffold_11-int 20015 20718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9678648..9680841 /note="source:CACAO_M_E12297_F14_scaffold_3 6345 8537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9680942..9685472) /note="source:INTACT670_F33_scaffold_3-int 4269 8795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9686211..9689746) /note="source:INTACT670_F33_scaffold_3-int 1 3537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9689815..9690590) /note="source:CACAO_M_E52869_F12_scaffold_8 8057 8759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9690112..9690998 /note="source:INTACT111_F36_scaffold_10-int 3084 3973" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9691737..9694699) /note="source:CACAO_M_E13798_F15_scaffold_3 1 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9697323..9698596 /note="source:CACAO_M_E34540_F17_scaffold_5 271 1558" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9699409..9709273) /note="source:INTACT234_F12_scaffold_9-int 278 10186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9713153..9713209 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4120 4173" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9713302..9715976 /locus_tag="TCM_043769" /note="dbxref CacaoGD:Thecc1EG043769" mRNA join(9713302..9713323,9714642..9714851,9715579..9715976) /locus_tag="TCM_043769" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element complement(9713323..9714299) /note="source:CACAO_M_E1841_F5_scaffold_1 14183 15161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9714297..9714351) /note="source:INTACT137_F12_scaffold_9-int 5832 5886" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(9714760..9714851,9715579..9715693) /locus_tag="TCM_043769" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19084.1" /translation="MLNLTSGLFPKLGSSSNGLQMAFGSLGFSMGIELSNVDVDLIPQ SLNYFPLSFSRIEPLSVKVDFPSL" mobile_element 9716082..9717562 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3076 4567" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9721813..9722644 /note="source:CACAO_M_E43672_F60_scaffold_5 1510 2342" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9724191..9724269) /note="source:INTACT280_F60_scaffold_5-int 8213 8292" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9724203..9725436) /note="source:scaffold_8_CACTA_0858 5719 6950" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9725731..9732868) /note="source:CACAO_M_E3326_F17_scaffold_1 1 7091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9733138..9733249) /note="source:CACAO_M_E52278_F17_scaffold_7 3063 3161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9733642..9734377 /note="source:CACAO_M_E3248_F5_scaffold_1 24597 25332" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9734325..9736489) /locus_tag="TCM_043771" /note="dbxref CacaoGD:Thecc1EG043771" mRNA complement(join(9734325..9734440,9734692..9735353, 9736465..9736489)) /locus_tag="TCM_043771" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.48 coverage" CDS complement(join(9734345..9734440,9734692..9734826)) /locus_tag="TCM_043771" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19085.1" /translation="MGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVTLLIV KAKWAMPIGSMHRSWLEIWFLTTRIREIKVYL" mobile_element complement(9734357..9734472) /note="source:CACAO_M_E58148_F12_scaffold_9 10837 10958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9735809..9735875 /note="source:scaffold_3_CACTA_0382 1851 1918" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9735839..9736283) /note="source:CACAO_M_E3248_F5_scaffold_1 3300 3722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9736532..9739144 /note="source:CACAO_M_E5800_F12_scaffold_2 13448 17098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9739118..9739191) /note="source:CACAO_M_S_E84376_F22_scaffold_6 16912 16983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9739450..9740092 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18185 18834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9739833..9741943) /note="source:CACAO_M_E3248_F5_scaffold_1 1653 3693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9742353..9742529 /note="source:CACAO_M_S_E64832_F14_scaffold_5 11774 11950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9742781..9742822) /note="source:CACAO_M_E3248_F5_scaffold_1 6178 6219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9742824..9744236 /note="source:CACAO_M_E516_F5_scaffold_1 685 2098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9744227..9744311 /note="source:INTACT120_F22_scaffold_3-int 7029 7113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9745432..9745739 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2909 3215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9747349..9748797) /note="source:INTACT163_F158_scaffold_5-int 9481 10934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9748791..9748933) /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9748969..9749357 /note="source:INTACT215F_F14_scaffold_3-int 11162 11550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9749478..9749566) /note="source:CACAO_M_E3626_F245_scaffold_1 2937 3024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9750596..9750962) /note="source:CACAO_M_E49857_F85_scaffold_7 20688 21053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9752671..9753226) /note="source:CACAO_M_E43744_F324_scaffold_5 5289 5839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9753709..9754240) /note="source:CACAO_M_S_E84376_F22_scaffold_6 12768 13281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9754241..9757245) /note="source:CACAO_M_E84536_F89_scaffold_10 1 3005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9757246..9757657 /note="source:CACAO_M_E9571_F13_scaffold_2 8853 9267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9759140..9759200) /note="source:INTACT146F_F14_scaffold_2-int 12362 12422" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9759201..9761865) /note="source:CACAO_M_S_E144701_F231_scaffold_10 1 2665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9761927..9762245) /note="source:INTACT146F_F14_scaffold_2-int 13373 13707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9761968..9763197 /note="source:INTACT120_F22_scaffold_3-int 8144 9366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9763199..9765472 /note="source:CACAO_M_S_E64832_F14_scaffold_5 1933 4309" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9763286..9777337 /locus_tag="TCM_043774" /note="dbxref CacaoGD:Thecc1EG043774" mRNA join(9763286..9763322,9775724..9777337) /locus_tag="TCM_043774" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045764t1" /inference="similar to AA sequence:Phytozome:Glyma15g26820.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" mobile_element 9765474..9765648 /note="source:CACAO_M_S_E31635_F14_scaffold_3 4280 4455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9765672..9768143) /note="source:CACAO_M_E42809_F5_scaffold_5 11283 13756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9768149..9770032 /note="source:CACAO_M_E516_F5_scaffold_1 4790 6694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9768356..9771373) /note="source:CACAO_M_E42809_F5_scaffold_5 2125 5159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9771374..9792400) /note="source:INTACT1784F_F24_scaffold_10-int 1 21027" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 9775750..9776577 /locus_tag="TCM_043774" /note="paralog of Thecc1EG045764t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /protein_id="EOY19086.1" /db_xref="Phytozome:Glyma15g26820.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ALN4" /translation="MQEELDQFKRNCVWSLVSRPLNHPIVGTKWVFRNKVDEQGNVVR NKARLVAQGYNQEERIDYVETFAPVARIEAIRLLLAFACFMNFKLYQMDVKSAFLNGF IQEEVYVEQPPGFEDFEKPDHVLKLHKALYELKQAPRAWYERLSKFLVEKGYVRGNID TTLFIKKYLNDLIVFQIYVDDIVFCVTNEALCKNFAKEMQGEFDMSMMGELKYFLGLQ IKQSEKGIFINQERYIQDMLKKFDMLKLKPICTLMSPSTKLDADKKGKVLIKSSIEV" mobile_element complement(9792402..9794091) /note="source:CACAO_M_E42809_F5_scaffold_5 433 2128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9794090..9794863 /note="source:CACAO_M_E3248_F5_scaffold_1 1651 2382" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9794945..9795587) /note="source:INTACT170_F12_scaffold_5-int 5305 5946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9799516..9800206) /note="source:CACAO_M_S_E14932_F233_scaffold_2 7812 8523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9800290..9800746) /note="source:CACAO_M_S_E14932_F233_scaffold_2 2966 3425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9800748..9814804) /note="source:INTACT236_F12_scaffold_10-int 1 14057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9814805..9815092) /note="source:CACAO_M_S_E14932_F233_scaffold_2 2684 2969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9815022..9815652 /note="source:CACAO_M_E3248_F5_scaffold_1 1651 2303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9816180..9824406) /note="source:CACAO_M_E84523_F247_scaffold_10 1 8227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9824445..9824541 /note="source:CACAO_M_S_E64832_F14_scaffold_5 12581 12677" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9824526..9824976 /note="source:CACAO_M_E516_F5_scaffold_1 9470 9915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9824904..9824985) /note="source:CACAO_M_E11662_F12_scaffold_2 20629 20710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9826577..9827722) /note="source:scaffold_1_CACTA_0011 5257 6372" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9832108..9832164) /note="source:CACAO_M_E3248_F5_scaffold_1 3662 3715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9832128..9832196 /note="source:INTACT701_F305_scaffold_10-int 12201 12267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9832154..9834031) /note="source:CACAO_M_S_E64440_F7_scaffold_5 17865 19003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9834031..9834852 /note="source:CACAO_M_E12297_F14_scaffold_3 6346 7167" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9834526..9846117 /locus_tag="TCM_043783" /note="dbxref CacaoGD:Thecc1EG043783" mRNA join(9834526..9834794,9835439..9835632,9836566..9836720, 9840860..9841448,9843717..9843844,9844246..9844396, 9844491..9844651,9844923..9845286,9845847..9846117) /locus_tag="TCM_043783" /product="Ribosomal protein S8 family protein" /inference="alignment:exonerate- protein:2:ricco:29585.m000608" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043789t2" /inference="similar to AA sequence:Phytozome:Glyma17g02200.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4773t1" mobile_element 9835426..9835870 /note="source:CACAO_M_E12297_F14_scaffold_3 7636 8080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9835971..9837189) /note="source:CACAO_on_E279_scaffold_9 8452 9668" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 9837189..9838235 /note="source:CACAO_M_E33787_F13_scaffold_4 3771 4804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9843367..9843554) /note="source:INTACT135F_F90_scaffold_2-int 12975 13165" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(9844264..9844396,9844491..9844651,9844923..9845021) /locus_tag="TCM_043783" /note="paralog of Thecc1EG043789t2" /codon_start=1 /product="Ribosomal protein S8 family protein" /protein_id="EOY19087.1" /db_xref="Phytozome:Glyma17g02200.1" /db_xref="TAIR:AT5G59850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62244" /translation="MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKH GYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYI VLTTSAGIMDHEEARRKNVGGKVLGFFY" mobile_element complement(9848425..9851359) /note="source:CACAO_M_S_E64440_F7_scaffold_5 3968 6914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9851911..9852714) /note="source:INTACT105_F2_scaffold_2-int 1 791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9852875..9854441) /note="source:INTACT88_F12_scaffold_4-int 2644 4204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9854438..9855017) /note="source:INTACT88_F12_scaffold_4-int 1267 1872" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9862637..9862974 /note="source:CACAO_M_E35511_F5_scaffold_5 8754 9090" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9863798..9871191 /note="source:INTACT224_F176_scaffold_8-int 4862 12269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9871253..9871933 /note="source:CACAO_M_E24592_F195_scaffold_4 2443 3123" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9871923..9872011) /note="source:INTACT143_F152_scaffold_7-int 7552 7640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9871934..9872921) /note="source:scaffold_5_CACTA_0591 14462 15449" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9872684..9873739) /note="source:CACAO_M_E47740_F12_scaffold_6 5026 6034" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9873077..9873728 /note="source:CACAO_M_S_E19200_F389_scaffold_3 7660 8309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9873775..9874622) /note="source:scaffold_5_CACTA_0591 10060 10893" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9874621..9875609 /note="source:INTACT224_F176_scaffold_8-int 12930 13903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9875607..9876594) /note="source:CACAO_M_S_E15173_F4_scaffold_2 686 1521" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9878293..9879081) /note="source:INTACT95_F143_scaffold_9-int 2178 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9879082..9879410 /note="source:INTACT559_F78_scaffold_2-int 6734 6963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9879411..9882427) /note="source:CACAO_M_S_E33930_F7_scaffold_4 1 2992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9882942..9883091 /note="source:INTACT224_F176_scaffold_8-int 16026 16172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9883094..9886612 /note="source:INTACT762_F78_scaffold_4-int 1 3517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9886117..9886767) /note="source:INTACT465_F78_scaffold_6-int 9065 9719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9886768..9887863) /note="source:CACAO_M_E10566_F15_scaffold_2 1751 2847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9887964..9889609) /note="source:CACAO_M_E51813_F15_scaffold_7 1 1640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9889610..9894637 /note="source:INTACT762_F78_scaffold_4-int 3745 8771" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9891116..9903648 /locus_tag="TCM_043787" /note="dbxref CacaoGD:Thecc1EG043787" mRNA join(9891116..9891181,9900567..9900816,9901738..9902903, 9903077..9903648) /locus_tag="TCM_043787" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039108t1" /inference="similar to AA sequence:Phytozome:Glyma04g32860.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc8681t1_G3" mobile_element complement(9894629..9896586) /note="source:CACAO_M_E52654_F15_scaffold_7 893 2853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9896587..9896983) /note="source:CACAO_M_S_E50960_F369_scaffold_4 8166 8561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9899887..9900833 /note="source:CACAO_M_S_E144909_F278_scaffold_10 2459 3403" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(9900573..9900816,9901738..9902903,9903077..9903616) /locus_tag="TCM_043787" /note="paralog of Thecc1EG039108t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19088.1" /db_xref="Phytozome:Glyma04g32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BR83" /translation="MPPRRGRPPLTRSVGRGKGRSQRHQPNIVEEESAASTIRAAPAA EQADSPPHPPSPQPPTGIPAMPTEAAQALAAFFAAMAGRATVVASSSPARTDIQRKDS SGLPPRQGVAIRSGVESNTPAHPPSRPQTRTSTRVFAVTEDEAQVRPRAVTGIMSLFD KDAYVLIDSGSDRSYVSTTFASIADRNLSPLEEEIVIHTPLGEKLVRNSCYRDCGVRV GEEEFRGDLIPLEILDFDLILGMDWLTAHRANVDCFRKEVVLRNSEGAEIVFVGKRRV LPSCVISAIKASKLVQKGYPTYLAYVIDTSKGEPKLEDVPIVSEFPDVFPDDLPGLPP DRELEFPIDLLPGTAPISIPPYRMAPAELKELKVQLQELVDKGFIRPSISPWGAPVLF VKKKDGTLRLCIDYRQLNRMTIKNKYPLPRIDDLFDQLQGATVFSKVDLRSGYHQLRI KEQDVPKTAFRTRYGHYEFLLYIDEIVRLHGVPVSIVSDRDPRFTSRFWPKFQEALGT KLKFSTAFHPQTDGQSERTIQTLEDMLRACVIDFIGSWDRHLPLVEFAYNNSFQSSIG MAPYEALYGRKCRTPLCWDEVGERKLVGVELIELTNDKIKVIRERLKVAQDRQKSYAD KRRKDLEFEIDDKVFLRFLLGKVII" mobile_element 9901645..9902951 /note="source:CACAO_M_S_E144909_F278_scaffold_10 4163 5469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9903067..9903668) /note="source:CACAO_M_E9661_F15_scaffold_2 11028 11631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9904573..9905374 /note="source:CACAO_M_E43590_F7_scaffold_5 7047 7851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9907168..9907250) /note="source:CACAO_M_E69340_F15_scaffold_9 7783 7856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9907216..9907949 /note="source:CACAO_M_E52048_F15_scaffold_7 1948 2681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9907947..9908026) /note="source:CACAO_M_E9661_F15_scaffold_2 7731 7811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9908008..9908422) /note="source:CACAO_M_E34490_F78_scaffold_5 1 415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9908423..9908527) /note="source:CACAO_M_E52812_F7_scaffold_8 3840 3932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9908518..9908959 /note="source:INTACT224_F176_scaffold_8-int 16327 16811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9910448..9910568 /note="source:scaffold_5_CACTA_0591 6353 6474" /mobile_element_type="transposon:TIR/CACTA" gene 9913609..9915377 /locus_tag="TCM_043789" /note="dbxref CacaoGD:Thecc1EG043789" mRNA join(9913609..9913848,9914022..9914403,9914499..9914659, 9914930..9915289) /locus_tag="TCM_043789" /product="Ribosomal protein S8 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g45060.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043783t1" /inference="similar to AA sequence:Phytozome:Glyma17g02200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc18588t14" mRNA join(9913750..9913848,9914253..9914403,9914499..9914659, 9914930..9915377) /locus_tag="TCM_043789" /product="Ribosomal protein S8 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g45060.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043783t1" /inference="similar to AA sequence:Phytozome:Glyma17g02200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4371t1; alternateUTRof:Thecc1EG043789t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc18588t14; inference alignment:Newbler:10:TSA:cgbaP2_g00448t00002_C2" CDS join(9914271..9914403,9914499..9914659,9914930..9915028) /locus_tag="TCM_043789" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043783t1" /codon_start=1 /product="Ribosomal protein S8 family protein isoform 1" /protein_id="EOY19089.1" /db_xref="Phytozome:Glyma17g02200.1" /db_xref="TAIR:AT5G59850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62244" /translation="MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKH GYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYI VLTTSAGIMDHEEARRKNVGGKVLGFFY" CDS join(9914271..9914403,9914499..9914659,9914930..9915028) /locus_tag="TCM_043789" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043783t1" /codon_start=1 /product="Ribosomal protein S8 family protein isoform 1" /protein_id="EOY19090.1" /db_xref="Phytozome:Glyma17g02200.1" /db_xref="TAIR:AT5G59850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62244" /translation="MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKH GYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYI VLTTSAGIMDHEEARRKNVGGKVLGFFY" gene complement(9915346..9915737) /locus_tag="TCM_043790" /note="dbxref CacaoGD:Thecc1EG043790" mRNA complement(9915346..9915737) /locus_tag="TCM_043790" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS complement(9915463..9915711) /locus_tag="TCM_043790" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19091.1" /translation="MLRLHQSLAFHPIIAIRNICSYFMTEKLELPRSSSYTIHVTTNF MLVKFHTSFSIKKMSASGCIQYTIMPHWEELRPQMLEI" mobile_element complement(9917639..9920621) /note="source:CACAO_M_S_E144653_F7_scaffold_10 1 2983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9920961..9921064 /note="source:INTACT49_F22_scaffold_9-int 7860 7965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9922638..9923695) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3533 4606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9928613..9928659 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5731 5776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9931031..9932054) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3542 4599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9932978..9933792 /note="source:INTACT563_F255_scaffold_10-int 5430 6245" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9933716..9933811 /note="source:CACAO_M_S_E6027_F12_scaffold_2 7548 7661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9934072..9934801 /note="source:INTACT563_F255_scaffold_10-int 16531 17258" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9937274..9939188) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18496 20386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9939212..9939867 /note="source:CACAO_M_E3248_F5_scaffold_1 3794 4452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9939852..9940302 /note="source:CACAO_M_E58601_F7_scaffold_9 8820 9270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9940423..9941365 /note="source:INTACT293_F14_scaffold_5-int 9241 10154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9941247..9941398) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18606 18788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9941401..9942065) /note="source:CACAO_M_S_E64832_F14_scaffold_5 3646 4309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9944011..9944280) /note="source:CACAO_M_E14312_F12_scaffold_3 11037 11303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9946278..9946701 /note="source:CACAO_M_S_E6875_F7_scaffold_2 13986 14410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9947158..9947756 /note="source:CACAO_M_E9571_F13_scaffold_2 8668 9267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9948266..9948869) /note="source:CACAO_M_S_E64832_F14_scaffold_5 3636 4233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9950525..9950619) /note="source:CACAO_M_E65323_F12_scaffold_9 7715 7813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9951578..9951728) /note="source:INTACT170_F12_scaffold_5-int 2437 2591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9951590..9951722 /note="source:CACAO_M_S_E85177_F5_scaffold_7 20117 20246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9951724..9951799) /note="source:INTACT120_F22_scaffold_3-int 7028 7102" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9952163..9954417) /locus_tag="TCM_043796" /note="dbxref CacaoGD:Thecc1EG043796" mRNA complement(join(9952163..9952550,9952660..9952835, 9954408..9954417)) /locus_tag="TCM_043796" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(9952362..9952550,9952660..9952773)) /locus_tag="TCM_043796" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19092.1" /translation="MTLRLDYEVLYLRVVGGVGLKVSLLGLLVNKALVRDMLEIGVEY PNKLMGTSSKDLEYQPYEEMDRGNVMVTLGDFMKLRPPFFTGTNPKEYLKVSLIVG" mobile_element 9953403..9954033 /note="source:CACAO_M_E33933_F9_scaffold_4 23582 24214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9954035..9955688 /note="source:CACAO_M_E33282_F13_scaffold_4 10259 11843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9955643..9955696 /note="source:INTACT563_F255_scaffold_10-int 2238 2483" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9955697..9955931 /note="source:CACAO_M_S_E64832_F14_scaffold_5 11320 11525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9955800..9956238) /note="source:INTACT170_F12_scaffold_5-int 1577 2018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9956007..9959878 /note="source:INTACT78_F136_scaffold_6-int 2722 6070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9959879..9970087 /note="source:CACAO_M_E35704_F13_scaffold_5 1 10170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9973605..9974248 /note="source:INTACT329_F199_scaffold_2-int 898 1535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9973982..9974641) /note="source:INTACT224_F176_scaffold_8-int 4172 4831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9974539..9977348 /note="source:CACAO_M_E33933_F9_scaffold_4 617 5815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9977345..9977653) /note="source:scaffold_3_CACTA_0382 11571 11878" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9977674..9977773) /note="source:CACAO_LINE_E_211_scaffold_8 7192 7291" /mobile_element_type="retrotransposon:LINE/L1" gene complement(9977688..9979957) /locus_tag="TCM_043801" /note="dbxref CacaoGD:Thecc1EG043801" mRNA complement(join(9977688..9978872,9978994..9979126, 9979349..9979587,9979711..9979957)) /locus_tag="TCM_043801" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" gene complement(9977688..9978367) /locus_tag="TCM_043802" /note="dbxref CacaoGD:Thecc1EG043802" mRNA complement(9977688..9978367) /locus_tag="TCM_043802" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040167t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage" CDS complement(9977915..9978328) /locus_tag="TCM_043802" /note="paralog of Thecc1EG040167t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19094.1" /translation="MPTGQGNGQRRSESGAWVTNESVDFLIGSGEHSPMGEQNANLTN SLVGNNQSSPTIAWPRERMEDHVDNPPTQESVSGKCMHNKKLSDVPSDPSFFETKFTK IEVHLRIRHRKHSDAEILIDKILSLVSDNRGYVGK" CDS complement(join(9978511..9978872,9978994..9979126, 9979349..9979587,9979711..9979894)) /locus_tag="TCM_043801" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19093.1" /translation="MVGKFSRMQHMQEIRTAFKGIGLVGAYEIRRLDYKHILIQRARS QQDMVKADLVYFEPKNAYGLAPLMVDEATANGTRPSVARVCVEYDCQKPPIEQVWIVI RDSQTRSITGGYMQKVEFTKLSEFCSHCCHVGHGVASCMDTVGKAAEPQKETQHTNVP IHNNFQMIMVEEKRRTKSGGKTGTNSGEKVASATQPQSLEGDTRDSHVNEERSLNGTH ANDKDIEVTVPIEGNEAPAAGWATCQLSFYVHGNRDHMNKVTGAKDKKLATTVKEDRT SLHESAKAAAGQKLKINYTAPPVQAATLR" mobile_element complement(9981608..9982470) /note="source:CACAO_M_E1841_F5_scaffold_1 3097 3950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9982452..9983119 /note="source:CACAO_M_S_E101224_F9_scaffold_9 3325 3992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9983238..9990127 /note="source:CACAO_M_S_E101224_F9_scaffold_9 4106 10976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9990127..9990552 /note="source:CACAO_M_S_E4591_F5_scaffold_1 17896 18327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9990553..9993485) /note="source:CACAO_M_E5899_F5_scaffold_2 19652 21817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9993470..9993680 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18323 18519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9993779..9994163) /note="source:CACAO_M_E58601_F7_scaffold_9 9848 10229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9993961..9994625 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18501 19237" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9995282..9996860 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18937 20003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9996861..9999857) /note="source:CACAO_M_S_E144631_F7_scaffold_10 1 2997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9999862..10000353 /note="source:CACAO_M_E1841_F5_scaffold_1 16198 16686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10000337..10001573 /note="source:CACAO_M_S_E4591_F5_scaffold_1 19233 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10001574..10002606) /note="source:CACAO_M_S_E90022_F9_scaffold_8 41 1066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10002656..10003045 /note="source:INTACT189_F49_scaffold_5-int 17863 18253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10005997..10006069) /note="source:CACAO_M_E1841_F5_scaffold_1 15167 15241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10006134..10006454 /note="source:CACAO_M_E14312_F12_scaffold_3 5768 6130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10006455..10008390) /note="source:CACAO_M_S_E118741_F15_scaffold_9 800 2736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10008391..10010328) /note="source:CACAO_M_E36218_F15_scaffold_5 901 2838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10010429..10011303) /note="source:CACAO_M_S_E84415_F15_scaffold_6 1 873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10011304..10012149 /note="source:CACAO_M_E85668_F15_scaffold_11 1933 2778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10012150..10013308 /note="source:CACAO_M_S_E121173_F7_scaffold_10 1818 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10013319..10013479 /note="source:INTACT135F_F90_scaffold_2-int 753 913" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10013473..10013505 /note="source:INTACT329_F199_scaffold_2-int 6397 6428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10013480..10015922) /note="source:CACAO_M_E5899_F5_scaffold_2 20295 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10015977..10018627) /note="source:INTACT789_F335_scaffold_1-int 7042 9700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10018552..10018637 /note="source:CACAO_M_E58324_F9_scaffold_9 23994 24079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10018801..10019034 /note="source:CACAO_M_S_E1446_F7_scaffold_1 1 234" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10020982..10022058) /note="source:scaffold_2_CACTA_0259 4885 5950" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10022065..10022913) /note="source:INTACT329_F199_scaffold_2-int 987 1893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10022904..10023663) /note="source:INTACT329_F199_scaffold_2-int 6559 7286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10025510..10027040 /note="source:INTACT504_F7_scaffold_1-int 3025 4551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10027056..10029583) /note="source:INTACT329_F199_scaffold_2-int 962 3532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10028705..10030748 /note="source:INTACT215F_F14_scaffold_3-int 9578 11547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10030798..10031320) /note="source:INTACT409F_F47_scaffold_4-int 16256 16735" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10031600..10032094) /note="source:INTACT409F_F47_scaffold_4-int 15746 16274" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10032035..10032121 /note="source:INTACT215F_F14_scaffold_3-int 13098 13186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10032096..10033030) /note="source:CACAO_M_S_E14932_F233_scaffold_2 8730 9633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10032961..10033140 /note="source:CACAO_M_E52877_F7_scaffold_8 4880 5065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10033637..10035594) /note="source:CACAO_M_E33213_F12_scaffold_4 8120 10019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10035591..10035859 /note="source:CACAO_M_E52877_F7_scaffold_8 5046 5324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10035861..10036522) /note="source:CACAO_M_E33282_F13_scaffold_4 11860 12520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10036050..10036816 /note="source:INTACT595F_F13_scaffold_4-int 2579 3343" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10037081..10038212 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3318 4455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10038212..10040278 /note="source:CACAO_M_E52877_F7_scaffold_8 5320 7312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10039667..10040512 /note="source:INTACT563_F255_scaffold_10-int 16521 17384" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10040359..10041259) /note="source:scaffold_1_CACTA_0011 8163 9045" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10041291..10042460 /note="source:CACAO_M_E3248_F5_scaffold_1 2479 3627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10042847..10043020 /note="source:INTACT336_F12_scaffold_2-int 1569 1740" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10042866..10044015) /note="source:INTACT1373F_F385_scaffold_8-int 20198 21366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10044106..10044227 /note="source:INTACT336_F12_scaffold_2-int 2471 2586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10044219..10045358 /note="source:INTACT212F_F351_scaffold_3-int 2383 3530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10044826..10046846) /note="source:CACAO_M_S_E85177_F5_scaffold_7 17614 19104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10046845..10047479 /note="source:INTACT336_F12_scaffold_2-int 2577 3228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10047480..10050357) /note="source:CACAO_M_E84447_F54_scaffold_10 1 2878" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10050358..10051503 /note="source:INTACT336_F12_scaffold_2-int 3224 4355" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10053993..10054709) /note="source:INTACT1783F_F12_scaffold_10-int 10718 11439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10054682..10055154 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2573 3043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10054958..10055743) /note="source:CACAO_M_E3248_F5_scaffold_1 2939 3745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10055909..10056002) /note="source:CACAO_M_E3248_F5_scaffold_1 2469 2562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10055960..10056910 /note="source:INTACT170_F12_scaffold_5-int 5867 6822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10057069..10057128) /note="source:INTACT563_F255_scaffold_10-int 17063 17122" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10057133..10057274 /note="source:INTACT754_F12_scaffold_5-int 1 143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10057275..10060169) /note="source:CACAO_M_E84439_F247_scaffold_10 1 2895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10060170..10062004 /note="source:INTACT754_F12_scaffold_5-int 139 1975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10060399..10065259) /note="source:CACAO_M_S_E99574_F14_scaffold_9 15935 20834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10065259..10068210) /note="source:CACAO_M_S_E64440_F7_scaffold_5 3971 6914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10068211..10069312) /note="source:CACAO_M_S_E99574_F14_scaffold_9 14837 15939" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10069257..10079171 /locus_tag="TCM_043808" /note="dbxref CacaoGD:Thecc1EG043808" mRNA join(10069257..10069292,10070839..10071447, 10079142..10079171) /locus_tag="TCM_043808" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s00750.1.8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018141t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3929t1" mobile_element complement(10069313..10079297) /note="source:INTACT1783F_F12_scaffold_10-int 1 9985" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 10070846..10071322 /locus_tag="TCM_043808" /note="paralog of Thecc1EG018141t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19095.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJW5" /translation="MFKMELGEDITSMFDRFTNITNKLSKLGKLIPEHGVVKRLLRCL PKSWKPKVTVIREAKDLNIITLDEICGSLLTHELELKEEENRREAKEKKKSIALKAII LEEELEELSCDDDEDLALVARKFRKLMSRRNQRLTRRGFKKDQGASWKIRNKNDSN" mobile_element 10079298..10079329 /note="source:CACAO_M_S_E64832_F14_scaffold_5 1210 1242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10079299..10083076) /note="source:CACAO_M_S_E99574_F14_scaffold_9 11068 14840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10083076..10085350) /note="source:CACAO_M_E52877_F7_scaffold_8 4948 7149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10085350..10086242 /note="source:CACAO_M_S_E14932_F233_scaffold_2 9589 10485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10086243..10089231) /note="source:CACAO_M_E84427_F245_scaffold_10 1 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10089232..10089711 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5426 5899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10090013..10090758) /note="source:CACAO_M_E3248_F5_scaffold_1 2939 3653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10090894..10091017) /note="source:CACAO_M_E3248_F5_scaffold_1 2469 2595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10090912..10091953 /note="source:INTACT170_F12_scaffold_5-int 5867 6826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10092464..10099735 /note="source:INTACT129_F13_scaffold_7-int 2914 10172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10099736..10104459) /note="source:CACAO_M_E35511_F5_scaffold_5 3614 10960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10104460..10105110 /note="source:INTACT224_F176_scaffold_8-int 1 650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10105101..10105250 /note="source:CACAO_M_E32900_F13_scaffold_4 3567 3703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10105222..10105244 /note="source:INTACT170_F12_scaffold_5-int 7944 7970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10105245..10108121) /note="source:CACAO_M_E84414_F15_scaffold_10 1 2877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10108244..10109241 /note="source:scaffold_4_CACTA_0493 105 1096" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10109242..10112072) /note="source:CACAO_M_E70239_F392_scaffold_10 1 2827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10112073..10112611 /note="source:scaffold_4_CACTA_0493 1092 1627" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10112609..10113828) /note="source:CACAO_M_E35511_F5_scaffold_5 11570 12683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10119908..10120132) /note="source:INTACT515_F237_scaffold_9-int 9649 9853" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10120553..10123530) /note="source:CACAO_M_E84401_F245_scaffold_10 1 2978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10123891..10123932) /note="source:INTACT224_F176_scaffold_8-int 2512 2553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10123892..10123939 /note="source:scaffold_5_CACTA_0591 10060 10107" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10123935..10126010) /note="source:INTACT224_F176_scaffold_8-int 4566 6482" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10126004..10126166) /note="source:INTACT224_F176_scaffold_8-int 1179 1341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10126318..10126428 /note="source:INTACT297_F12_scaffold_9-int 982 1087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10126329..10126423) /note="source:CACAO_M_E43348_F5_scaffold_5 27060 27148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10134955..10137593 /note="source:CACAO_M_S_E4413_F3_scaffold_1 8 2666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10137590..10140369) /note="source:CACAO_M_E84390_F15_scaffold_10 1 2780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10140370..10140729) /note="source:CACAO_M_S_E119615_F3_scaffold_9 16015 16376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10140730..10143584) /note="source:CACAO_M_E84389_F15_scaffold_10 1 2855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10143585..10144723 /note="source:CACAO_M_S_E4413_F3_scaffold_1 3196 4336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10143876..10145035) /note="source:CACAO_M_E12058_F3_scaffold_2 3769 4927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10145016..10145118 /note="source:scaffold_2_CACTA_0261 11406 11515" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10146597..10149599) /note="source:CACAO_M_S_E144515_F7_scaffold_10 1 3003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10149600..10149655 /note="source:INTACT295_F13_scaffold_9-int 7888 7944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10149637..10150582) /note="source:INTACT319_F3_scaffold_1-int 4236 5177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10150573..10154240 /note="source:INTACT319_F3_scaffold_1-int 7037 10704" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10154154..10154253) /note="source:CACAO_M_S_E119615_F3_scaffold_9 120 220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10154717..10155324 /note="source:CACAO_M_S_E64023_F13_scaffold_5 19803 20409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10155425..10155847) /note="source:CACAO_M_E57048_F15_scaffold_8 2118 2540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10158343..10159340 /note="source:CACAO_M_S_E64023_F13_scaffold_5 20753 21751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10159445..10160451 /note="source:CACAO_M_S_E64023_F13_scaffold_5 21772 22778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10160014..10160515 /note="source:INTACT610_F272_scaffold_5-int 5039 5534" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10161808..10161917 /note="source:INTACT170_F12_scaffold_5-int 5560 5667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10162250..10162501 /note="source:INTACT170_F12_scaffold_5-int 5663 5916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10162585..10163657) /note="source:scaffold_6_CACTA_0702 3112 4167" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10163920..10164071) /note="source:CACAO_M_S_E119615_F3_scaffold_9 17328 17479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10166521..10166754 /note="source:CACAO_M_E3884_F22_scaffold_1 12934 13130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10168940..10176131) /note="source:INTACT1782F_F71_scaffold_10-int 1 7192" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10176132..10176836 /note="source:INTACT407F_F356_scaffold_4-int 14814 15552" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10178675..10181665) /note="source:CACAO_M_S_E144500_F7_scaffold_10 1 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10181958..10181992) /note="source:scaffold_6_CACTA_0702 12688 12721" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10183961..10184142) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5438 5615" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10185349..10186676 /locus_tag="TCM_043821" /note="dbxref CacaoGD:Thecc1EG043821" mRNA join(10185349..10185736,10185847..10185957, 10186081..10186161,10186268..10186471) /locus_tag="TCM_043821" /product="Family of Uncharacterized protein function isoform 1" /inference="alignment:exonerate- protein:2:ricco:29939.m000540" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022486t1" /inference="similar to AA sequence:ricco:29939.m000540" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05831t00001" mRNA join(10185434..10185736,10185847..10185957, 10186040..10186161,10186268..10186676) /locus_tag="TCM_043821" /product="Family of Uncharacterized protein function isoform 2" /inference="alignment:exonerate- protein:2:ricco:29939.m000540" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022486t1" /inference="similar to AA sequence:ricco:29939.m000540" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b042281t1a2; inference alignment:Newbler:10:TSA:cgbaL_g05831t00001" CDS join(10185521..10185736,10185847..10185957, 10186081..10186161,10186268..10186342) /locus_tag="TCM_043821" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29939.m000540; paralog of Thecc1EG022486t1" /codon_start=1 /product="Family of Uncharacterized protein function isoform 1" /protein_id="EOY19096.1" /db_xref="TAIR:AT3G52900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXZ8" /translation="MQKMKNLGSMGSSGRSSMEENIEDEEISRLAISTFQAREEEIER KKMEVKEKVEIQLGRAEEETRRLSMIWEELEVLSDPLRKEVAMVRKKIDMANRELKPL GQSCQKKEKEYKEALEAFNEKNKEKAQLVTTLMEMLTESERLRMKKLEELSKNIESIP " CDS join(10185521..10185736,10185847..10185957, 10186040..10186156) /locus_tag="TCM_043821" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29939.m000540; paralog of Thecc1EG022486t1" /codon_start=1 /product="Family of Uncharacterized protein function isoform 2" /protein_id="EOY19097.1" /db_xref="TAIR:AT3G52900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C0N0" /translation="MQKMKNLGSMGSSGRSSMEENIEDEEISRLAISTFQAREEEIER KKMEVKEKVEIQLGRAEEETRRLSMIWEELEVLSDPLRKEVAMVRKKIDMANRELKPL GQSCQKKIQCTTQVRFLLGCRRKNIKKPWKLSTKRTKKRHSWLLL" gene complement(10186832..10201424) /locus_tag="TCM_043822" /note="dbxref CacaoGD:Thecc1EG043822" mRNA complement(join(10186832..10187289,10187862..10187952, 10193480..10193592,10193668..10193847,10194399..10194496, 10194763..10194915,10195695..10195779,10197541..10197632, 10197721..10197777,10198801..10198908,10199012..10199067, 10199155..10199251,10199340..10199368,10199461..10199599, 10201015..10201112,10201190..10201407)) /locus_tag="TCM_043822" /product="Galactose oxidase/kelch repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034738001" /inference="similar to AA sequence:Phytozome:GSVIVT01034738001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01922t00001; inference alignment:Newbler:10:TSA:cgbaB_g01922t00001" CDS complement(join(10187230..10187289,10187862..10187952, 10193480..10193592,10193668..10193847,10194399..10194496, 10194763..10194915,10195695..10195779,10197541..10197632, 10197721..10197777,10198801..10198908,10199012..10199067, 10199155..10199251,10199340..10199368,10199461..10199599, 10201015..10201112,10201190..10201251)) /locus_tag="TCM_043822" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 1" /protein_id="EOY19098.1" /db_xref="Phytozome:GSVIVT01034738001" /db_xref="TAIR:AT2G36360.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5W3" /translation="MHYWVRASSSDFSGTLPQPRSGHTAVPIGKSKVVVFGGLLDKKF ISDIAVYDIENKIWFQPECTGNGSDGQVGPSPRAFHVAVAIDCHMFIFGGRFGSRRLG DFWVLDTDIWQWSELTSFGDLPSPRDFSAASAIGNQKIVMYGGWDGKKWLSDVYVLDT ISLEWMELSVTGSLPPPRCGHTATMVEKRLLVYGGRGGGGPIMSDLWALKGLIEEENE TPGWTQLKLPGQAPSPRCGHTVTSGGHYLLLFGGHGTGGWLSRYDIYYNDCIVLDRLS AQWKRLPIGNEPPAARAYHSLSHIGSRYLLFGGFDGKLTYGDIWWLVPEEDPIAKWFI EPPPKNLPHKGMAVANDNIQSAFKESQREDDAITELQRRLGVSVSLSGPGLQIIDESD DKEFIELGSKLIGEKVSNNEQGLVSQTIEVLRGHWRNSTPSSIPLKELGPLLRDYQRL VTRHHLANNGSDFQHIESWLSGKEAHKFYHLNNVSQLRMDDIPKLLAEYKKLLPE" gene complement(10187925..10190328) /locus_tag="TCM_043823" /note="dbxref CacaoGD:Thecc1EG043823" mRNA complement(join(10187925..10187952,10189032..10190328)) /locus_tag="TCM_043823" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc384t13" mRNA complement(join(<10189444..10189473,10193480..10193592, 10193668..10193847,10194399..10194496,10194763..10194915, 10195695..10195779,10197541..10197632,10197721..10197777, 10198801..10198908,10199012..10199067,10199155..10199251, 10199340..10199368,10199461..10199599,10201015..10201112, 10201190..10201424)) /locus_tag="TCM_043822" /product="Galactose oxidase/kelch repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034738001" /inference="similar to AA sequence:Phytozome:GSVIVT01034738001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc384t16; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc384t16; inference alignment:Newbler:10:TSA:cgbaB_g01922t00001" CDS complement(join(<10189446..10189473,10193480..10193592, 10193668..10193847,10194399..10194496,10194763..10194915, 10195695..10195779,10197541..10197632,10197721..10197777, 10198801..10198908,10199012..10199067,10199155..10199251, 10199340..10199368,10199461..10199599,10201015..10201112, 10201190..10201251)) /locus_tag="TCM_043822" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 2" /protein_id="EOY19099.1" /db_xref="Phytozome:GSVIVT01034738001" /db_xref="TAIR:AT2G36360.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5W3" /translation="MHYWVRASSSDFSGTLPQPRSGHTAVPIGKSKVVVFGGLLDKKF ISDIAVYDIENKIWFQPECTGNGSDGQVGPSPRAFHVAVAIDCHMFIFGGRFGSRRLG DFWVLDTDIWQWSELTSFGDLPSPRDFSAASAIGNQKIVMYGGWDGKKWLSDVYVLDT ISLEWMELSVTGSLPPPRCGHTATMVEKRLLVYGGRGGGGPIMSDLWALKGLIEEENE TPGWTQLKLPGQAPSPRCGHTVTSGGHYLLLFGGHGTGGWLSRYDIYYNDCIVLDRLS AQWKRLPIGNEPPAARAYHSLSHIGSRYLLFGGFDGKLTYGDIWWLVPEEDPIAKWFI EPPPKNLPHKGMAVANDNIQSAFKESQREDDAITELQRRLGVSVSLSGPGLQIIDESD DKEFIELGSKLIGEKVSNNEQGLVSQTIEVLRGHWRNSTPSSIPLKELGPLLRDYQRL VTRHHLFTGIFTNTN" CDS complement(10189950..10190255) /locus_tag="TCM_043823" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19100.1" /translation="MESKVVKTGLVASWFVFELNSIAFCRARRAFRSCAGILLYSLAE VEGPQIRSSSPGPMSTSITQGALSESLLQLCSSTPPIGLAALAIEVPSSEEGSYEDS" gene complement(10203081..10208504) /locus_tag="TCM_043825" /note="dbxref CacaoGD:Thecc1EG043825" mRNA complement(join(10203081..10204073,10204758..10204815, 10207936..10208504)) /locus_tag="TCM_043825" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(10203661..10204073,10204758..10204815, 10207936..10208319)) /locus_tag="TCM_043825" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19101.1" /translation="MKVVVINYGFRCLNVESVLMIEAPFLKFEVCEIVKECDGNKALG PDGFNLNFFKTSWLVLKREVMDLIYEFYNNGHLGNVVNESFIILILKKKNPNSVGDSK PISLVGSINKLVAKLLANILRKVIVEEFTLGDVVSDGVVWKANASGSKPKMVEENLKW EAPSLGWVKFNINGASVGDPRGAGIGEILRNYKGDTLMHFSNFVGVCDANYIEVLAIK EAFILFTKILRQSNFNLWVESDSMNVVIWVKNPAKTPSRHRQCMVQIGCLQKSNESLE GDLCKARG" mobile_element 10211431..10211479 /note="source:CACAO_M_E3248_F5_scaffold_1 6074 6121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10211482..10211522) /note="source:scaffold_3_CACTA_0382 11837 11876" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10211972..10212766 /note="source:CACAO_M_E12463_F12_scaffold_3 3607 4408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10212861..10212946) /note="source:CACAO_M_E5899_F5_scaffold_2 20510 20669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10212878..10212978 /note="source:CACAO_M_S_E65716_F44_scaffold_5 8495 8574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10212949..10212999 /note="source:CACAO_M_S_E5046_F335_scaffold_1 19751 19802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10215645..10216913 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15786 17065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10216906..10216954 /note="source:CACAO_M_E3248_F5_scaffold_1 6167 6218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10217080..10217265 /note="source:scaffold_3_CACTA_0382 10023 10205" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10218908..10229977) /note="source:CACAO_M_S_E144496_F15_scaffold_10 1 11054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10229978..10230340 /note="source:CACAO_M_S_E5046_F335_scaffold_1 20457 20816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10230343..10235167 /note="source:CACAO_M_E50198_F12_scaffold_7 5342 10168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10235177..10238125 /note="source:CACAO_M_E43498_F302_scaffold_5 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10239472..10239931) /note="source:scaffold_3_CACTA_0382 2010 2467" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10239922..10240556 /note="source:INTACT697_F302_scaffold_2-int 11799 12512" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10240557..10243757) /note="source:INTACT154_F14_scaffold_8-int 6759 9977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10243758..10266907) /note="source:CACAO_M_E84368_F4_scaffold_10 1 23150" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10266908..10270638 /note="source:CACAO_M_S_E119160_F14_scaffold_9 3248 6990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10271705..10272689) /note="source:CACAO_M_E12463_F12_scaffold_3 3544 4568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10272720..10272938) /note="source:CACAO_M_S_E99244_F4_scaffold_9 3760 3980" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10272875..10272948 /note="source:INTACT697_F302_scaffold_2-int 13091 13166" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10273587..10281630 /locus_tag="TCM_043834" /note="dbxref CacaoGD:Thecc1EG043834" mRNA join(10273587..10274438,10274744..10274985, 10275181..10275333,10275829..10276121,10276944..10277254, 10277469..10277551,10277716..10278132,10281522..10281630) /locus_tag="TCM_043834" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400022118" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(10274032..10274438,10274744..10274985, 10275181..10275333,10275829..10276121,10276944..10277254, 10277469..10277551,10277716..10278132,10281522..10281556) /locus_tag="TCM_043834" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19102.1" /db_xref="Phytozome:PGSC0003DMP400022118" /translation="MTNLANIRYAFRGIGLARVYKIRWLDYKHVLIHLSNKQDFNRIW MKQHWFIANQKIRVFKWSPEFEAEKESPIILVWISFPNLKTHLYKKSTLVLIAKIVGK PLFVDEATARGSRSSVARVYIEYDCRNQLVDQIKDPKDSNVSVLNRFHAISEDDNGEQ NVAKGGMNDFIYLQGEKDQNEKCLGMRDMELTAPVRDASLGVADGMLVHEPVHTDAEG SGEHVPIEGQGASQSRGSAGHNRGETSTTCSRQRMEGHVNNPSHMESTSECPIFAPFV YAKCSRTEKIPLWTVLRSLLADIRVPWLVGVDFNVILNRAERLYGASPHVGSMDDFAV TLLDCGLVDGGFVGNTYTWTNSHMFQHLDRIDLFEAVVDFFHGAEMPRGMISDNILLV QELMGRLDKKVRGGNLVIKLDMMKAYDHMECDFLYKMLEQFGFSPQWINIIQRCISNC WFSVLINGTTTGYFKSEIRNMKLCPDNALTIRRVVSLRIEIWQVPDSARLTLIRSVLS FLPIYLLQVLKPLACVIEKIEILFNNFMWGDFTEGKRIHWTPWQKITWPTFEGGLDIR NISNVVEAFGMKIWWRFKSCNSLWARFMRVKYCVGQVPRYVKPRIHDSQTWKRMLVSC LVTEQHMRWRIEFSINNGALTP" mobile_element complement(10279147..10279984) /note="source:CACAO_M_S_E19555_F4_scaffold_3 444 1356" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10279975..10280109 /note="source:CACAO_M_S_E4591_F5_scaffold_1 5814 5949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10279986..10280143) /note="source:CACAO_M_S_E85177_F5_scaffold_7 16958 17117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10280101..10282640 /note="source:CACAO_M_E3499_F262_scaffold_1 214 2755" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10282962..10284089 /locus_tag="TCM_043836" /note="dbxref CacaoGD:Thecc1EG043836" mRNA join(10282962..10283763,10283881..10284089) /locus_tag="TCM_043836" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009188t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(10283200..10283763,10283881..10284003) /locus_tag="TCM_043836" /note="paralog of Thecc1EG009188t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19103.1" /translation="MVNFEAYSSIISWEAIPTLVIARRGDIQTAQMWGLTFPRKVISL PKVISWHKPSTGEFKLNVDGSSINNFQNAGGGGLLRDHTSTLVFVFSENLGAKNSLQA ELLALHRGLLLCQENNISRLWIEMDAMIVIQMLKEGHIGSHDSRYLWASIRQQLKLFS FRISHIHREGNQAADWLANRGHQHHGLQLYFEDYLESSKSDGFQFYDCIHSYAHKLNH FTIGISLIFS" assembly_gap 10290408..10300407 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(10300418..10301439) /note="source:scaffold_10_CACTA_0137 4335 5384" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10304006..10304822) /note="source:CACAO_M_E13757_F15_scaffold_3 2279 3095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10307192..10307429) /note="source:scaffold_10_CACTA_0137 1561 1798" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10307430..10310390) /note="source:CACAO_M_E84349_F172_scaffold_10 1 2961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10310391..10311964) /note="source:scaffold_10_CACTA_0137 1 1565" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10312977..10313344 /note="source:CACAO_M_E23144_F272_scaffold_4 8142 8509" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10314336..10316169 /note="source:CACAO_M_E51617_F15_scaffold_7 1 3503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10316170..10316560 /note="source:CACAO_M_E13201_F318_scaffold_3 1 391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10316661..10316936) /note="source:CACAO_M_E52012_F318_scaffold_7 2333 2609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10317037..10319336 /note="source:CACAO_M_E22877_F318_scaffold_3 753 3026" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10317995..10318574) /locus_tag="TCM_043838" /note="dbxref CacaoGD:Thecc1EG043838" mRNA complement(10317995..10318574) /locus_tag="TCM_043838" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022723t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage" CDS complement(10318052..10318450) /locus_tag="TCM_043838" /note="paralog of Thecc1EG022723t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19104.1" /translation="MHIIPLSSSHMQRLMLLSLGGGRSRSIPPFTRQEMHFTPDHEAT EQSLPSSSKLLGGESYFATDHTCQSTHRVKDHEASSPISYGGNNGLCALPLTHSRVSN GLYALLLAHNRVSNGLCALLLAHSRVQINM" mobile_element 10319337..10320630 /note="source:CACAO_M_E56665_F15_scaffold_8 1682 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10320631..10322791) /note="source:CACAO_M_E50311_F328_scaffold_7 3291 5477" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10332259..10332909 /note="source:CACAO_M_S_E52921_F60_scaffold_5 18390 19037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10332907..10333596 /note="source:CACAO_M_S_E52921_F60_scaffold_5 18817 19510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10336512..10336627 /note="source:CACAO_M_S_E52921_F60_scaffold_5 19524 19639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10337743..10337946 /note="source:CACAO_on_SS_E135_scaffold_10 409 603" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10341463..10341569 /note="source:scaffold_5_CACTA_0586 11452 11560" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10341744..10344698) /note="source:CACAO_M_E35778_F7_scaffold_5 1 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10345162..10350715 /locus_tag="TCM_043841" /note="dbxref CacaoGD:Thecc1EG043841" mRNA join(10345162..10345279,10348029..10348135, 10348900..10348939,10349222..10349322,10349720..10349822, 10349904..10350715) /locus_tag="TCM_043841" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(10348088..10348135,10348900..10348939, 10349222..10349322,10349720..10349822,10349904..10349977) /locus_tag="TCM_043841" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19105.1" /translation="MASFEGHYYGESIVAKPFEAIWSLGNHLGGRNEVVGCASEIEDD CKLKLSTMMGLPLICHYEWICNFVQGMNSGHQFDLWMSGVSIPCDYVCPYRDGGDVDH REITPINDLILYQLLRHCP" mobile_element complement(10350368..10350452) /note="source:scaffold_5_CACTA_0584 1859 1994" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10350374..10350457) /note="source:INTACT242_F12_scaffold_1-int 2707 2796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10354742..10355226 /note="source:CACAO_M_E65050_F7_scaffold_9 15391 15914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10356569..10357514 /note="source:CACAO_M_E65050_F7_scaffold_9 9344 10297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10361916..10362068) /note="source:CACAO_M_E5899_F5_scaffold_2 20477 20628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10368145..10368210) /note="source:scaffold_3_CACTA_0382 1861 1927" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10368153..10368267) /note="source:CACAO_M_E5899_F5_scaffold_2 20693 20797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10369423..10372037) /note="source:CACAO_M_E84334_F53_scaffold_10 1 2615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10375738..10375846 /note="source:CACAO_M_E5899_F5_scaffold_2 1119 1203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10376677..10376739 /note="source:CACAO_M_E42369_F96_scaffold_5 693 756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10376687..10376749) /note="source:CACAO_M_S_E144734_F98_scaffold_10 525 589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10377536..10378864 /note="source:scaffold_5_CACTA_0596 5573 6926" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10377539..10379050) /note="source:CACAO_M_E24592_F195_scaffold_4 2342 3874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10378817..10379081 /note="source:CACAO_M_E24592_F195_scaffold_4 89 338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10379081..10379329 /note="source:CACAO_M_E24592_F195_scaffold_4 20734 20958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10379313..10379455) /note="source:CACAO_M_E42395_F3_scaffold_5 12511 12652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10379329..10379344 /note="source:INTACT1308F_F98_scaffold_7-int 9865 9920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10379345..10379443) /note="source:CACAO_M_E14113_F106_scaffold_3 3233 3331" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10379444..10379456 /note="source:INTACT1308F_F98_scaffold_7-int 9921 9974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10380489..10382059 /note="source:CACAO_M_E42395_F3_scaffold_5 1 1599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10382049..10383221 /note="source:CACAO_M_E24592_F195_scaffold_4 1449 2632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10383631..10384358 /note="source:CACAO_M_E14113_F106_scaffold_3 4881 5605" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10384355..10384943 /note="source:CACAO_M_E42395_F3_scaffold_5 1594 2183" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10384944..10387655) /note="source:CACAO_M_E84326_F96_scaffold_10 1 2712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10387656..10389771 /note="source:CACAO_M_E12058_F3_scaffold_2 2070 4202" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10387696..10390556 /locus_tag="TCM_043843" /note="dbxref CacaoGD:Thecc1EG043843" mRNA join(10387696..10387745,10389575..10390556) /locus_tag="TCM_043843" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018294t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS 10389586..10389837 /locus_tag="TCM_043843" /note="paralog of Thecc1EG018294t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19106.1" /translation="MMANSLSLKSILDANKLTVPNFIDWFRNIKIILKQEKNAYVLDG LILEEPSNNATNNKKEAYCNTSYPHVEVNKTLSIRRRVN" mobile_element 10393430..10394552 /note="source:CACAO_M_E12058_F3_scaffold_2 4197 5352" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10396219..10411491) /locus_tag="TCM_043844" /note="dbxref CacaoGD:Thecc1EG043844" mRNA complement(join(10396219..10396602,10397120..10397427, 10399618..10399759,10401291..10401385,10402388..10402519, 10402648..10402716,10404814..10404912,10405040..10405124, 10405226..10405326,10405475..10405543,10406231..10406271, 10406427..10406852,10407375..10407583,10409428..10409531, 10409786..10409927,10410018..10410319,10410966..10411491)) /locus_tag="TCM_043844" /product="Map3k delta-1 protein kinase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034710001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022441t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034710001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4049t1" mRNA complement(join(10396219..10396602,10397120..10397721, 10399618..10399759,10401291..10401385,10402388..10402519, 10402648..10402716,10404814..10404912,10405040..10405124, 10405226..10405326,10405475..10405543,10406231..10406271, 10406427..10406852,10407375..10407583,10409428..10409531, 10409786..10409927,10410018..10410319,10410966..10411491)) /locus_tag="TCM_043844" /product="Map3k delta-1 protein kinase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034710001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022441t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034710001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b042303t1a2; alternateUTRof:Thecc1EG043844t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4049t1" mRNA complement(join(10397402..10397702,10402675..10402716, 10404814..10404912,10405040..10405124,10405226..10405326, 10405475..10405543,10406231..10406271,10406427..10406852, 10407375..10407583,10409428..10409531,10409786..10409927, 10410018..10410319,10410966..10411276)) /locus_tag="TCM_043844" /product="Map3k delta-1 protein kinase, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034710001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022441t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034710001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc611t18_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc603t16_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4049t1" mRNA complement(join(10397467..10397721,10401291..10401385, 10402388..10402519,10402648..10402716,10404814..10404912, 10405040..10405124,10405226..10405326,10405475..10405543, 10406231..10406271,10406427..10406852,10407375..10407583, 10409428..10409531,10409786..10409927,10410018..10410319, 10410966..10411491)) /locus_tag="TCM_043844" /product="Map3k delta-1 protein kinase, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034710001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022441t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034710001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b042303t1a4; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc603t16_C2" CDS complement(join(10397685..10397702,10402675..10402716, 10404814..10404912,10405040..10405124,10405226..10405326, 10405475..10405543,10406231..10406271,10406427..10406852, 10407375..10407583,10409428..10409531,10409786..10409927, 10410018..10410319,10410966..10411265)) /locus_tag="TCM_043844" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG022441t1" /codon_start=1 /product="Map3k delta-1 protein kinase, putative isoform 6" /protein_id="EOY19112.1" /db_xref="Phytozome:GSVIVT01034710001" /db_xref="TAIR:AT5G03730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HW07" /translation="MMYGNQSDSCYGLQVQVNGNLIATGFGQQEQQQMMASFNKSWAQ QTEESYQLQLALALRVSSQAASAADSYFLDFNSDANKNNRNGSFPLTSQDVSHRFWVN GSLSYFDRILDGFYLIHGMDPYAWTISADQGEIGQMPSFDSLKAIDPHDDLSIKVVLI DKLRDPRLRELQNCVLKISSSWVSTKDVIDQLARLVCNQMGDAASSEEGVYRQWKECT KVLKDCLGSIVFPIGSLSFGLCVHRALLFKVLADLVNLPCRITKGCKYCQREDASSCL VQLGVDREYLVDMFAEPGALSRPDSSLNGTSSILVSSPLCHPRFKLVETATSIRKLSK LYFVDDQSCKHTFDDASSDNASNQDEQTGPQLSKAFDMNYFNKNKLVSTLINNNGSTL SPLHQRTAWNIYCDKDLQMQNSSNLIPKAIASSHLVRSPLLPSSVPSGMQNDACQALA FSDPRQCTANSVLFKQSDQPVMSIDHGDLDIPWSELVLKEKIGAGSFGTVHRAELRGC EVAVKILLEQGFHAERFREFLREVAIMKRLRHPNIVLFMGAVTQPPKLSIVTEYLSRG SLFRLLQMPDAALVLDERCRLNMALDVARGMNYLHQLKPPIVHRDLKSPNLLVDSTYT VKVCDFGLSCSKANTFFSFAS" CDS complement(join(10397685..10397721,10401291..10401385, 10402388..10402519,10402648..10402716,10404814..10404912, 10405040..10405124,10405226..10405326,10405475..10405543, 10406231..10406271,10406427..10406852,10407375..10407583, 10409428..10409531,10409786..10409927,10410018..10410319, 10410966..10411265)) /locus_tag="TCM_043844" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG022441t1" /codon_start=1 /product="Map3k delta-1 protein kinase, putative isoform 4" /protein_id="EOY19110.1" /db_xref="Phytozome:GSVIVT01034710001" /db_xref="TAIR:AT5G03730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRG7" /translation="MMYGNQSDSCYGLQVQVNGNLIATGFGQQEQQQMMASFNKSWAQ QTEESYQLQLALALRVSSQAASAADSYFLDFNSDANKNNRNGSFPLTSQDVSHRFWVN GSLSYFDRILDGFYLIHGMDPYAWTISADQGEIGQMPSFDSLKAIDPHDDLSIKVVLI DKLRDPRLRELQNCVLKISSSWVSTKDVIDQLARLVCNQMGDAASSEEGVYRQWKECT KVLKDCLGSIVFPIGSLSFGLCVHRALLFKVLADLVNLPCRITKGCKYCQREDASSCL VQLGVDREYLVDMFAEPGALSRPDSSLNGTSSILVSSPLCHPRFKLVETATSIRKLSK LYFVDDQSCKHTFDDASSDNASNQDEQTGPQLSKAFDMNYFNKNKLVSTLINNNGSTL SPLHQRTAWNIYCDKDLQMQNSSNLIPKAIASSHLVRSPLLPSSVPSGMQNDACQALA FSDPRQCTANSVLFKQSDQPVMSIDHGDLDIPWSELVLKEKIGAGSFGTVHRAELRGC EVAVKILLEQGFHAERFREFLREVAIMKRLRHPNIVLFMGAVTQPPKLSIVTEYLSRG SLFRLLQMPDAALVLDERCRLNMALDVARGMNYLHQLKPPIVHRDLKSPNLLVDSTYT VKVCDFGLSCSKANTFLSSKTAVGTPEWMAPEVLCDEPSNEKSDVYSFGVVLWELVTL QQPWKNLNPPQVVAAVGFKGKRLEIPSNVNPVVASLIELCWAKILAVHYFSFAS" mRNA complement(join(10399143..10399642,10402386..10402519, 10402648..10402716,10404814..10404912,10405040..10405124, 10405226..10405326,10405475..10405543,10406231..10406271, 10406427..10406852,10407375..10407583,10409428..10409531, 10409786..10409927,10410018..10410319,10410966..10410986)) /locus_tag="TCM_043844" /product="Map3k delta-1 protein kinase, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034710001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022441t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034710001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc20165t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc603t16_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4049t1" mRNA complement(join(10399365..10399759,10401291..10401385, 10402388..10402519,10402648..10402716,10404814..10404912, 10405040..10405124,10405226..10405326,10405475..10405543, 10406231..10406274,10406427..10406852,10407375..10407583, 10409428..10409531,10409786..10409927,10410018..10410319, 10410966..10411440)) /locus_tag="TCM_043844" /product="Map3k delta-1 protein kinase, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034710001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022441t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034710001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4049t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4049t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc603t16_C2" CDS complement(join(10399558..10399642,10402386..10402519, 10402648..10402716,10404814..10404912,10405040..10405124, 10405226..10405326,10405475..10405543,10406231..10406271, 10406427..10406852,10407375..10407583,10409428..10409531, 10409786..10409927,10410018..10410259)) /locus_tag="TCM_043844" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG022441t1" /codon_start=1 /product="Map3k delta-1 protein kinase, putative isoform 5" /protein_id="EOY19111.1" /db_xref="Phytozome:GSVIVT01034710001" /db_xref="TAIR:AT5G03730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRG7" /translation="MDPYAWTISADQGEIGQMPSFDSLKAIDPHDDLSIKVVLIDKLR DPRLRELQNCVLKISSSWVSTKDVIDQLARLVCNQMGDAASSEEGVYRQWKECTKVLK DCLGSIVFPIGSLSFGLCVHRALLFKVLADLVNLPCRITKGCKYCQREDASSCLVQLG VDREYLVDMFAEPGALSRPDSSLNGTSSILVSSPLCHPRFKLVETATSIRKLSKLYFV DDQSCKHTFDDASSDNASNQDEQTGPQLSKAFDMNYFNKNKLVSTLINNNGSTLSPLH QRTAWNIYCDKDLQMQNSSNLIPKAIASSHLVRSPLLPSSVPSGMQNDACQALAFSDP RQCTANSVLFKQSDQPVMSIDHGDLDIPWSELVLKEKIGAGSFGTVHRAELRGCEVAV KILLEQGFHAERFREFLREVAIMKRLRHPNIVLFMGAVTQPPKLSIVTEYLSRGSLFR LLQMPDAALVLDERCRLNMALDVARGMNYLHQLKPPIVHRDLKSPNLLVDSTYTVKVC DFGLSCSKANTFLSSKTAVGTPEWMAPEVLCDEPSNEKSDVYSFGVVLWELVTLQQPW KNLNPPQVNLVTTYVHVSIRHPSTYCSGVVCCLLH" CDS complement(join(10399660..10399759,10401291..10401385, 10402388..10402519,10402648..10402716,10404814..10404912, 10405040..10405124,10405226..10405326,10405475..10405543, 10406231..10406271,10406427..10406852,10407375..10407583, 10409428..10409531,10409786..10409927,10410018..10410319, 10410966..10411265)) /locus_tag="TCM_043844" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022441t1" /codon_start=1 /product="Map3k delta-1 protein kinase, putative isoform 1" /protein_id="EOY19107.1" /db_xref="Phytozome:GSVIVT01034710001" /db_xref="TAIR:AT5G03730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRG7" /translation="MMYGNQSDSCYGLQVQVNGNLIATGFGQQEQQQMMASFNKSWAQ QTEESYQLQLALALRVSSQAASAADSYFLDFNSDANKNNRNGSFPLTSQDVSHRFWVN GSLSYFDRILDGFYLIHGMDPYAWTISADQGEIGQMPSFDSLKAIDPHDDLSIKVVLI DKLRDPRLRELQNCVLKISSSWVSTKDVIDQLARLVCNQMGDAASSEEGVYRQWKECT KVLKDCLGSIVFPIGSLSFGLCVHRALLFKVLADLVNLPCRITKGCKYCQREDASSCL VQLGVDREYLVDMFAEPGALSRPDSSLNGTSSILVSSPLCHPRFKLVETATSIRKLSK LYFVDDQSCKHTFDDASSDNASNQDEQTGPQLSKAFDMNYFNKNKLVSTLINNNGSTL SPLHQRTAWNIYCDKDLQMQNSSNLIPKAIASSHLVRSPLLPSSVPSGMQNDACQALA FSDPRQCTANSVLFKQSDQPVMSIDHGDLDIPWSELVLKEKIGAGSFGTVHRAELRGC EVAVKILLEQGFHAERFREFLREVAIMKRLRHPNIVLFMGAVTQPPKLSIVTEYLSRG SLFRLLQMPDAALVLDERCRLNMALDVARGMNYLHQLKPPIVHRDLKSPNLLVDSTYT VKVCDFGLSCSKANTFLSSKTAVGTPEWMAPEVLCDEPSNEKSDVYSFGVVLWELVTL QQPWKNLNPPQVVAAVGFKGKRLEIPSNVNPVVASLIELCWANDTSKRPSFSYVMECL YQVITNTASQKFHRQIS" CDS complement(join(10399660..10399759,10401291..10401385, 10402388..10402519,10402648..10402716,10404814..10404912, 10405040..10405124,10405226..10405326,10405475..10405543, 10406231..10406271,10406427..10406852,10407375..10407583, 10409428..10409531,10409786..10409927,10410018..10410319, 10410966..10411265)) /locus_tag="TCM_043844" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022441t1" /codon_start=1 /product="Map3k delta-1 protein kinase, putative isoform 1" /protein_id="EOY19108.1" /db_xref="Phytozome:GSVIVT01034710001" /db_xref="TAIR:AT5G03730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRG7" /translation="MMYGNQSDSCYGLQVQVNGNLIATGFGQQEQQQMMASFNKSWAQ QTEESYQLQLALALRVSSQAASAADSYFLDFNSDANKNNRNGSFPLTSQDVSHRFWVN GSLSYFDRILDGFYLIHGMDPYAWTISADQGEIGQMPSFDSLKAIDPHDDLSIKVVLI DKLRDPRLRELQNCVLKISSSWVSTKDVIDQLARLVCNQMGDAASSEEGVYRQWKECT KVLKDCLGSIVFPIGSLSFGLCVHRALLFKVLADLVNLPCRITKGCKYCQREDASSCL VQLGVDREYLVDMFAEPGALSRPDSSLNGTSSILVSSPLCHPRFKLVETATSIRKLSK LYFVDDQSCKHTFDDASSDNASNQDEQTGPQLSKAFDMNYFNKNKLVSTLINNNGSTL SPLHQRTAWNIYCDKDLQMQNSSNLIPKAIASSHLVRSPLLPSSVPSGMQNDACQALA FSDPRQCTANSVLFKQSDQPVMSIDHGDLDIPWSELVLKEKIGAGSFGTVHRAELRGC EVAVKILLEQGFHAERFREFLREVAIMKRLRHPNIVLFMGAVTQPPKLSIVTEYLSRG SLFRLLQMPDAALVLDERCRLNMALDVARGMNYLHQLKPPIVHRDLKSPNLLVDSTYT VKVCDFGLSCSKANTFLSSKTAVGTPEWMAPEVLCDEPSNEKSDVYSFGVVLWELVTL QQPWKNLNPPQVVAAVGFKGKRLEIPSNVNPVVASLIELCWANDTSKRPSFSYVMECL YQVITNTASQKFHRQIS" CDS complement(join(10399660..10399759,10401291..10401385, 10402388..10402519,10402648..10402716,10404814..10404912, 10405040..10405124,10405226..10405326,10405475..10405543, 10406231..10406274,10406427..10406852,10407375..10407583, 10409428..10409531,10409786..10409927,10410018..10410319, 10410966..10411265)) /locus_tag="TCM_043844" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022441t1" /codon_start=1 /product="Map3k delta-1 protein kinase, putative isoform 3" /protein_id="EOY19109.1" /db_xref="Phytozome:GSVIVT01034710001" /db_xref="TAIR:AT5G03730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRG7" /translation="MMYGNQSDSCYGLQVQVNGNLIATGFGQQEQQQMMASFNKSWAQ QTEESYQLQLALALRVSSQAASAADSYFLDFNSDANKNNRNGSFPLTSQDVSHRFWVN GSLSYFDRILDGFYLIHGMDPYAWTISADQGEIGQMPSFDSLKAIDPHDDLSIKVVLI DKLRDPRLRELQNCVLKISSSWVSTKDVIDQLARLVCNQMGDAASSEEGVYRQWKECT KVLKDCLGSIVFPIGSLSFGLCVHRALLFKVLADLVNLPCRITKGCKYCQREDASSCL VQLGVDREYLVDMFAEPGALSRPDSSLNGTSSILVSSPLCHPRFKLVETATSIRKLSK LYFVDDQSCKHTFDDASSDNASNQDEQTGPQLSKAFDMNYFNKNKLVSTLINNNGSTL SPLHQRTAWNIYCDKDLQMQNSSNLIPKAIASSHLVRSPLLPSSVPSGMQNDACQALA FSDPRQCTANSVLFKQSDQPVMSIDHGDLDIPWSELVLKEKIGAAGSFGTVHRAELRG CEVAVKILLEQGFHAERFREFLREVAIMKRLRHPNIVLFMGAVTQPPKLSIVTEYLSR GSLFRLLQMPDAALVLDERCRLNMALDVARGMNYLHQLKPPIVHRDLKSPNLLVDSTY TVKVCDFGLSCSKANTFLSSKTAVGTPEWMAPEVLCDEPSNEKSDVYSFGVVLWELVT LQQPWKNLNPPQVVAAVGFKGKRLEIPSNVNPVVASLIELCWANDTSKRPSFSYVMEC LYQVITNTASQKFHRQIS" mobile_element 10412869..10415014 /note="source:CACAO_M_S_E53671_F83_scaffold_5 1 2148" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10415015..10415840) /note="source:CACAO_M_S_E13904_F42_scaffold_2 2272 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10415979..10417458 /note="source:CACAO_M_E43974_F42_scaffold_5 1614 3098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10417459..10418228 /note="source:INTACT88_F12_scaffold_4-int 16346 17116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10423115..10426051) /note="source:CACAO_M_E84319_F143_scaffold_10 1 2937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10426052..10426655 /note="source:INTACT336_F12_scaffold_2-int 1392 2006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10426764..10427426 /note="source:INTACT336_F12_scaffold_2-int 2484 3099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10427439..10435659 /note="source:CACAO_M_E14113_F106_scaffold_3 12315 20506" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10435657..10438562) /note="source:CACAO_M_E84316_F15_scaffold_10 1 3653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10438818..10439396 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3382 3956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10441023..10441149 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3951 4083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10441150..10450871) /note="source:CACAO_M_S_E144426_F33_scaffold_10 11466 21187" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10450972..10462436) /note="source:CACAO_M_S_E144426_F33_scaffold_10 1 11465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10462437..10463058 /note="source:CACAO_M_E43672_F60_scaffold_5 19514 20134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10463345..10464279 /note="source:scaffold_3_CACTA_0382 9598 10479" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10464246..10464322 /note="source:scaffold_3_CACTA_0382 1851 1927" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10465880..10465939 /note="source:CACAO_M_S_E52921_F60_scaffold_5 19579 19639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10465940..10466814 /note="source:INTACT189_F49_scaffold_5-int 14206 15044" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10468400..10468448 /note="source:CACAO_M_E58819_F24_scaffold_9 22062 22109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10469067..10469528) /note="source:CACAO_M_E11098_F15_scaffold_2 15102 15523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10469528..10469707 /note="source:scaffold_8_CACTA_0859 16513 16704" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10469547..10469883) /note="source:INTACT85_F9_scaffold_4-int 14650 14983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10471917..10474598 /note="source:CACAO_M_S_E86227_F231_scaffold_7 1 2695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10478235..10478724) /note="source:CACAO_M_E5899_F5_scaffold_2 22115 22603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10484928..10484994) /note="source:CACAO_M_E5899_F5_scaffold_2 21762 21827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10485282..10485566) /note="source:CACAO_M_E5899_F5_scaffold_2 21287 21577" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10485552..10485629) /note="source:CACAO_M_E33160_F143_scaffold_4 6739 6820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10485563..10485644 /note="source:CACAO_M_E5899_F5_scaffold_2 19648 19730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10486170..10486392 /note="source:scaffold_3_CACTA_0382 10413 10629" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10486634..10486700) /note="source:CACAO_M_S_E64023_F13_scaffold_5 4104 4174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10486701..10489475) /note="source:CACAO_M_E84309_F333_scaffold_10 1 2775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10489992..10490174 /note="source:CACAO_M_E5899_F5_scaffold_2 21830 22029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10490500..10490682 /note="source:scaffold_3_CACTA_0382 10025 10205" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10490742..10493481) /note="source:CACAO_M_S_E86227_F231_scaffold_7 1 4669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10494355..10494403 /note="source:INTACT697_F302_scaffold_2-int 1994 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10494404..10494507) /note="source:INTACT609_F90_scaffold_2-int 5400 5507" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10494508..10497126) /note="source:CACAO_M_S_E144410_F335_scaffold_10 1 2619" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10497130..10497225) /note="source:CACAO_M_S_E31635_F14_scaffold_3 2816 2917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10497159..10497580 /note="source:CACAO_M_E3248_F5_scaffold_1 3702 4125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10497786..10498083 /note="source:CACAO_M_E65323_F12_scaffold_9 10466 10755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10498114..10500896) /note="source:INTACT697_F302_scaffold_2-int 11770 14602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10499738..10501281) /note="source:INTACT563_F255_scaffold_10-int 4732 6245" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(10502266..10505031) /locus_tag="TCM_043850" /note="dbxref CacaoGD:Thecc1EG043850" mRNA complement(join(10502266..10503083,10504935..10505031)) /locus_tag="TCM_043850" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022791t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(10502765..10503083,10504935..10504954)) /locus_tag="TCM_043850" /note="paralog of Thecc1EG022791t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19113.1" /translation="MPPSSPRDSLESSESLESEDSFDIWEGANKLLEEWYKEKMKEAI AKGDIRPRKLSTVRHFPPGCGRGAALVSREECIRIQQAWIKDKMGKSQEIEEDPSMCS DQGDSDPNDT" mobile_element complement(10503333..10503647) /note="source:INTACT697_F302_scaffold_2-int 2735 3082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10503673..10506005 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18082 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10506376..10507974) /note="source:CACAO_M_S_E101631_F270_scaffold_9 15581 17147" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(10508708..10513254) /locus_tag="TCM_043851" /note="dbxref CacaoGD:Thecc1EG043851" mRNA complement(join(10508708..10509357,10509493..10509652, 10510102..10510146,10510768..10510901,10511215..10511302, 10511569..10511786,10512506..10512711,10512794..10513254)) /locus_tag="TCM_043851" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(10509000..10509357,10509493..10509652, 10510102..10510146,10510768..10510901,10511215..10511302, 10511569..10511786,10512506..10512711,10512794..10512868)) /locus_tag="TCM_043851" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19114.1" /translation="MSYWLLYEVTGRYNEIYTLNTLTAQIAIQVINVHLILKRFGLWG ISIGNRIIHIPTLIILIGGTILIFHGTTTLGLKIQDQITLIAFHTKLDLFLGECKPTS LTRQLAGRSYVYPRGIIEDVLVKVDKFIFLVYFVILDIKEDRQIPIILGRPFLARTRA LIDIEKDVTASLMPTSKPSIEKPPTLELKPLPTHLSPMCNKERGTVTRWRVCMDYRKL NKATRNDHFPLPFIDQMLDRLPDWTLPFELMCDASDCVIFVLLIEIFIRKKKFYMMLN IRFGMSLSCLSNAKTKFSKSVSRGRNPKCTSTLCQRVGNISRRHEMPLNILEMEIFYV WGIDVMGPFIPSHNNNNYTFVAVDYVSKWVEAVPLPTNDSKVVMSFIKKNIFTRFGTP RAIISDEVSHFCNKYFDTLFAKYGVKHKVTTAYHP" mobile_element complement(10512829..10517130) /note="source:CACAO_M_S_E101631_F270_scaffold_9 15575 19859" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10517143..10521312 /note="source:CACAO_M_E43348_F5_scaffold_5 22371 25188" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10521300..10521395 /note="source:INTACT215F_F14_scaffold_3-int 9569 9662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10521303..10524040) /note="source:CACAO_M_S_E53386_F231_scaffold_5 1 2687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10524041..10524338) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3601 3899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10524337..10525691) /note="source:CACAO_M_S_E90022_F9_scaffold_8 1722 3074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10525681..10529058 /note="source:CACAO_M_S_E4943_F12_scaffold_1 5128 8536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10529059..10531326) /note="source:CACAO_M_S_E6471_F369_scaffold_2 1 2336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10531327..10536400 /note="source:CACAO_M_S_E4943_F12_scaffold_1 6004 15775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10536345..10536422) /note="source:INTACT605_F14_scaffold_8-int 9461 9535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10536398..10536514 /note="source:CACAO_M_E5326_F22_scaffold_2 20539 20654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10536628..10537741 /note="source:INTACT170_F12_scaffold_5-int 4659 5782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10537630..10537735 /note="source:scaffold_7_CACTA_0793 2288 2390" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10537736..10540673) /note="source:CACAO_M_S_E144397_F164_scaffold_10 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10540674..10541714) /note="source:CACAO_M_E65323_F12_scaffold_9 7737 8776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10541673..10541747) /note="source:CACAO_M_S_E101631_F270_scaffold_9 347 421" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10541714..10542733) /note="source:CACAO_M_E36185_F9_scaffold_5 775 1789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10542854..10543037 /note="source:INTACT631_F9_scaffold_10-int 1234 1444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10543421..10543586) /note="source:CACAO_M_S_E4266_F12_scaffold_1 1008 1171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10543467..10543703) /note="source:scaffold_1_CACTA_0011 3519 3752" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10548079..10548439) /note="source:scaffold_5_CACTA_0591 16176 16533" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10548853..10549167) /note="source:CACAO_M_S_E101631_F270_scaffold_9 19311 19620" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10550502..10551076 /note="source:INTACT697_F302_scaffold_2-int 1701 2235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10551722..10551963 /note="source:CACAO_M_E53135_F19_scaffold_8 2739 2982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10552110..10553162) /note="source:CACAO_M_S_E144382_F12_scaffold_10 1 1053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10554983..10555215) /note="source:CACAO_M_S_E7818_F60_scaffold_2 19413 19637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10557884..10559137) /note="source:INTACT537_F22_scaffold_2-int 11923 13175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10558536..10560362) /note="source:scaffold_5_CACTA_0585 7015 8813" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10561025..10561171) /note="source:scaffold_5_CACTA_0585 6894 7017" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10561172..10562025) /note="source:CACAO_M_E53135_F19_scaffold_8 5172 6012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10562026..10565005) /note="source:CACAO_M_E84273_F245_scaffold_10 1 2980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10565006..10566248) /note="source:CACAO_M_E53135_F19_scaffold_8 3893 5176" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10568381..10570739 /note="source:CACAO_M_E53135_F19_scaffold_8 2427 4743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10570509..10570794) /note="source:scaffold_8_CACTA_0860 9851 10130" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10570763..10570830) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3214 3281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10570936..10572395 /note="source:CACAO_M_E53135_F19_scaffold_8 4859 6321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10572375..10572429 /note="source:CACAO_M_S_E84261_F4_scaffold_6 827 1036" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10572430..10572588) /note="source:scaffold_5_CACTA_0591 15561 15725" /mobile_element_type="transposon:TIR/CACTA" gene complement(10575337..10592411) /locus_tag="TCM_043862" /note="dbxref CacaoGD:Thecc1EG043862" mRNA complement(join(10575337..10576213,10576929..10577367, 10577472..10577556,10584108..10584248,10584944..10585012, 10585283..10585402,10585499..10585570,10585665..10585797, 10587672..10587745,10587865..10587936,10588744..10588821, 10589005..10589081,10589189..10589271,10591314..10591428, 10591556..10591669,10592077..10592411)) /locus_tag="TCM_043862" /product="Zn-dependent exopeptidases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030701001" /inference="similar to AA sequence:Phytozome:GSVIVT01030701001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4311t3" mRNA complement(join(10575614..10576234,10576946..10577367, 10577472..10577556,10584108..10584248,10584944..10585012, 10585283..10585402,10585499..10585570,10585665..10585797, 10587672..10587745,10587865..10587936,10588744..10588821, 10589005..10589081,10589189..10589271,10591314..10591428, 10591556..10591669,10592077..10592369)) /locus_tag="TCM_043862" /product="Zn-dependent exopeptidases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030701001" /inference="similar to AA sequence:Phytozome:GSVIVT01030701001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7855t9_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4311t3" CDS complement(join(10575949..10576213,10576929..10577367, 10577472..10577556,10584108..10584248,10584944..10585012, 10585283..10585402,10585499..10585570,10585665..10585797, 10587672..10587745,10587865..10587936,10588744..10588821, 10589005..10589081,10589189..10589271,10591314..10591428, 10591556..10591669,10592077..10592140)) /locus_tag="TCM_043862" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zn-dependent exopeptidases superfamily protein isoform 1" /protein_id="EOY19115.1" /db_xref="Phytozome:GSVIVT01030701001" /db_xref="TAIR:AT3G52640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7LU95" /translation="MALKIVFLLLLFSFQSRLSLSDQTNSMESVPDLQKSMYMVVDGY PCVRLVNLSGEIGCSNPGRDKVVAPIVKYKDTKELGQPSAILLSMDDVQGFFSRVSND SSFARNVGGVLVESGIEIQNKLKGFSPAQKFPQAEFAPYHNTSYEWNPIGNGDMWKSY NFPVFLLSESSTSTLQEVTMKNEKTEKAYTTNVAEFDLVMQTTKVGTHDSESCLKEET CLPLGGYSVWSAVPPINSSSSNQSKPIIITVASMDAASFFRDKSLGADSPISGVISLL AAVDALSRVDGLDDLNKQLVFLVFTGEAWGYLGSRRFLLELDQQSDAVRGLNSTLVEL VMEIGSTGKGFSQGNKTFFAHTEVSSGANEALDALKLAQESLKSEGVTISTANSSNPG IPPSSLMAFLRKNSSTSGIVLEDFDSIFVNKFYHSHLDDSSNINSSAIVAAASLVART LYILASNNKDLTSSAISTISVNASLVEELISCMLDCNPGLSCELVKSYISSTNTCPSH YVGVVLGEPSSTPYPSQVDDVSRFLWNFLADRTSIPKGNTSVCSHDCGKNGGMCIRAE TDGKGVCVISTTRYVPAYSTRLKFDSGTWKVLPPNSTDPMGMLDPVWTESNWNTIGLR VYTVQDPAYDRLVLLGGVAVTVLSYFAIVLTRAYITKALKQD" CDS complement(join(10576214..10576234,10576946..10577367, 10577472..10577556,10584108..10584248,10584944..10585012, 10585283..10585402,10585499..10585570,10585665..10585797, 10587672..10587745,10587865..10587936,10588744..10588821, 10589005..10589081,10589189..10589271,10591314..10591428, 10591556..10591669,10592077..10592140)) /locus_tag="TCM_043862" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zn-dependent exopeptidases superfamily protein isoform 2" /protein_id="EOY19116.1" /db_xref="Phytozome:GSVIVT01030701001" /db_xref="TAIR:AT3G52640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7LU95" /translation="MALKIVFLLLLFSFQSRLSLSDQTNSMESVPDLQKSMYMVVDGY PCVRLVNLSGEIGCSNPGRDKVVAPIVKYKDTKELGQPSAILLSMDDVQGFFSRVSND SSFARNVGGVLVESGIEIQNKLKGFSPAQKFPQAEFAPYHNTSYEWNPIGNGDMWKSY NFPVFLLSESSTSTLQEVTMKNEKTEKAYTTNVAEFDLVMQTTKVGTHDSESCLKEET CLPLGGYSVWSAVPPINSSSSNQSKPIIITVASMDAASFFRDKSLGADSPISGVISLL AAVDALSRVDGLDDLNKQLVFLVFTGEAWGYLGSRRFLLELDQQSDAVRGLNSTLVEL VMEIGSTGKGFSQGNKTFFAHTEVSSGANEALDALKLAQESLKSEGVTISTANSSNPG IPPSSLMAFLRKNSSTSGIVLEDFDSIFVNKFYHSHLDDSSNINSSAIVAAASLVART LYILASNNKDLTSSAISTISVNASLVEELISCMLDCNPGLSCELVKSYISSTNTCPSH YVGVVLGEPSSTPYPSQVDDVSRFLWNFLADRTSIPKGNTSVCSHDCGKNGGMCIRAE TDGKGVCACDSAL" mobile_element 10579424..10581214 /note="source:scaffold_2_CACTA_0276 6385 8187" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10582583..10582987 /note="source:CACAO_on_S_E58_scaffold_2 1 469" /mobile_element_type="transposon:TIR/Mutator" gene 10592092..10595164 /locus_tag="TCM_043864" /note="dbxref CacaoGD:Thecc1EG043864" mRNA join(10592092..10592538,10592802..10592995, 10593092..10593226,10593721..10593825,10594216..10594320, 10594541..10595164) /locus_tag="TCM_043864" /product="Ribosomal protein L9/RNase H1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038570001" /inference="similar to AA sequence:Phytozome:POPTR_0012s15210.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:PASA:2:TSA:puevd3b042322t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g01030t00001" mRNA join(10592092..10592538,10592828..10592995, 10593092..10593226,10593721..10593825,10594216..10594320, 10594541..10595164) /locus_tag="TCM_043864" /product="Ribosomal protein L9/RNase H1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038570001" /inference="similar to AA sequence:Phytozome:POPTR_0012s15210.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:PASA:2:TSA:puevd3b042322t1a3; alternateUTRof:Thecc1EG043864t3; inference alignment:Newbler:10:TSA:cgbaP1_g01030t00001" mRNA join(10592397..10592538,10592802..10592995, 10593092..10593226,10593721..10593825,10594216..10594320, 10594541..10594661,10594811..10595090) /locus_tag="TCM_043864" /product="Ribosomal protein L9/RNase H1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038570001" /inference="similar to AA sequence:Phytozome:POPTR_0012s15210.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00298t00001; alternateUTRof:Thecc1EG043864t2; inference alignment:Newbler:10:TSA:cgbaP1_g01030t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc127t4" mRNA join(10592397..10592538,10592828..10592995, 10593092..10593226,10593721..10593825,10594216..10594320, 10594541..10594661,10594811..10595090) /locus_tag="TCM_043864" /product="Ribosomal protein L9/RNase H1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038570001" /inference="similar to AA sequence:Phytozome:POPTR_0012s15210.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00298t00002; alternateUTRof:Thecc1EG043864t2; inference alignment:Newbler:10:TSA:cgbaP1_g01030t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc127t4" mRNA join(10592398..10592538,10592600..10592654, 10592802..10592995,10593092..10593226,10593721..10593825, 10594216..10594320,10594541..10594661,10594811..10595067) /locus_tag="TCM_043864" /product="Ribosomal protein L9/RNase H1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038570001" /inference="similar to AA sequence:Phytozome:POPTR_0012s15210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02045t00002; inference alignment:Newbler:10:TSA:cgbaP1_g01030t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc127t4" mRNA join(10592452..10592654,10592802..10592995, 10593092..10593226,10593721..10593825,10594216..10594320, 10594541..10594697,10594811..10595112) /locus_tag="TCM_043864" /product="Ribosomal protein L9/RNase H1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038570001" /inference="similar to AA sequence:Phytozome:POPTR_0012s15210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01030t00001" CDS join(10592852..10592995,10593092..10593226, 10593721..10593825,10594216..10594320,10594541..10594697, 10594811..10594923) /locus_tag="TCM_043864" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ribosomal protein L9/RNase H1 isoform 1" /protein_id="EOY19117.1" /db_xref="Phytozome:POPTR_0012s15210.1" /db_xref="TAIR:AT5G53070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA71" /translation="MAYLQHGRNALRQIIRDTNVQNQDRLMQPLLFACQGVRYRKLEV ILTTSIEKLGKAGETVRVAPGYFRNHLMPKLLAVPNIDKFVHLIREQRKIYQPEEEEV QVVAKTVEDKTKEYEKAANRLVNARLVLRRFIDVEKFRARATKDDPVELRSPVTKDEL VAEVARQLCVHIEPENLYLPTPLSTFGEFEVPLRLPKSIPLPEGKVHWTLQVKIREEQ YLLFELAKWDHRNQMSREYLSSMSDDAIYHHFKL" CDS join(10592852..10592995,10593092..10593226, 10593721..10593825,10594216..10594320,10594541..10594661, 10594811..10594923) /locus_tag="TCM_043864" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ribosomal protein L9/RNase H1 isoform 2" /protein_id="EOY19118.1" /db_xref="Phytozome:POPTR_0012s15210.1" /db_xref="TAIR:AT5G53070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA71" /translation="MAYLQHGRNALRQIIRDTNVQNQDRLMQPLLFACQGVRYRKLEV ILTTSIEKLGKAGETVRVAPGYFRNHLMPKLLAVPNIDKFVHLIREQRKIYQPEEEEV QVVAKTVEDKTKEYEKAANRLVNARLVLRRFIDVEKFRARATKDDPVELRSPVTKDEL VAEVARQLCVHIEPENLYLPTPLSTFGEFEVPLRLPKSIPLPEEEQYLLFELAKWDHR NQMSREYLSSMSDDAIYHHFKL" CDS join(10592852..10592995,10593092..10593226, 10593721..10593825,10594216..10594320,10594541..10594661, 10594811..10594923) /locus_tag="TCM_043864" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Ribosomal protein L9/RNase H1 isoform 2" /protein_id="EOY19120.1" /db_xref="Phytozome:POPTR_0012s15210.1" /db_xref="TAIR:AT5G53070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA71" /translation="MAYLQHGRNALRQIIRDTNVQNQDRLMQPLLFACQGVRYRKLEV ILTTSIEKLGKAGETVRVAPGYFRNHLMPKLLAVPNIDKFVHLIREQRKIYQPEEEEV QVVAKTVEDKTKEYEKAANRLVNARLVLRRFIDVEKFRARATKDDPVELRSPVTKDEL VAEVARQLCVHIEPENLYLPTPLSTFGEFEVPLRLPKSIPLPEEEQYLLFELAKWDHR NQMSREYLSSMSDDAIYHHFKL" CDS join(10592852..10592995,10593092..10593226, 10593721..10593825,10594216..10594320,10594541..10594661, 10594811..10594923) /locus_tag="TCM_043864" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Ribosomal protein L9/RNase H1 isoform 2" /protein_id="EOY19122.1" /db_xref="Phytozome:POPTR_0012s15210.1" /db_xref="TAIR:AT5G53070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA71" /translation="MAYLQHGRNALRQIIRDTNVQNQDRLMQPLLFACQGVRYRKLEV ILTTSIEKLGKAGETVRVAPGYFRNHLMPKLLAVPNIDKFVHLIREQRKIYQPEEEEV QVVAKTVEDKTKEYEKAANRLVNARLVLRRFIDVEKFRARATKDDPVELRSPVTKDEL VAEVARQLCVHIEPENLYLPTPLSTFGEFEVPLRLPKSIPLPEEEQYLLFELAKWDHR NQMSREYLSSMSDDAIYHHFKL" CDS join(10592852..10592995,10593092..10593226, 10593721..10593825,10594216..10594320,10594541..10594705) /locus_tag="TCM_043864" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ribosomal protein L9/RNase H1 isoform 3" /protein_id="EOY19119.1" /db_xref="Phytozome:POPTR_0012s15210.1" /db_xref="TAIR:AT5G53070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA71" /translation="MAYLQHGRNALRQIIRDTNVQNQDRLMQPLLFACQGVRYRKLEV ILTTSIEKLGKAGETVRVAPGYFRNHLMPKLLAVPNIDKFVHLIREQRKIYQPEEEEV QVVAKTVEDKTKEYEKAANRLVNARLVLRRFIDVEKFRARATKDDPVELRSPVTKDEL VAEVARQLCVHIEPENLYLPTPLSTFGEFEVPLRLPKSIPLPEGKVHWTLQVKIRGK" CDS join(10592852..10592995,10593092..10593226, 10593721..10593825,10594216..10594320,10594541..10594705) /locus_tag="TCM_043864" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Ribosomal protein L9/RNase H1 isoform 3" /protein_id="EOY19121.1" /db_xref="Phytozome:POPTR_0012s15210.1" /db_xref="TAIR:AT5G53070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA71" /translation="MAYLQHGRNALRQIIRDTNVQNQDRLMQPLLFACQGVRYRKLEV ILTTSIEKLGKAGETVRVAPGYFRNHLMPKLLAVPNIDKFVHLIREQRKIYQPEEEEV QVVAKTVEDKTKEYEKAANRLVNARLVLRRFIDVEKFRARATKDDPVELRSPVTKDEL VAEVARQLCVHIEPENLYLPTPLSTFGEFEVPLRLPKSIPLPEGKVHWTLQVKIRGK" mobile_element 10595806..10596807 /note="source:INTACT349_F203_scaffold_6-int 3 997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10596837..10599720) /note="source:CACAO_M_S_E84604_F20_scaffold_6 3215 6139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10599719..10602692 /note="source:scaffold_5_CACTA_0603 2551 5515" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10602571..10602711) /note="source:CACAO_M_E57097_F245_scaffold_8 5943 6077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10602692..10603748 /note="source:INTACT349_F203_scaffold_6-int 9915 10992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10603832..10605402) /note="source:INTACT46_F120_scaffold_6-int 324 1952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10604275..10605626 /note="source:INTACT349_F203_scaffold_6-int 12039 13357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10605650..10606080 /note="source:INTACT135F_F90_scaffold_2-int 5634 6065" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10632701..10633837) /note="source:CACAO_M_E5390_F15_scaffold_2 4336 5472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10634869..10636219 /note="source:INTACT454F_F360_scaffold_4-int 4541 5846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10638575..10639278 /note="source:CACAO_M_E49058_F33_scaffold_6 1046 1745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10638658..10639289) /note="source:INTACT646F_F95_scaffold_5-int 6912 7542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10639390..10639836) /note="source:INTACT646F_F95_scaffold_5-int 6439 6883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10640161..10640590 /note="source:CACAO_M_E50525_F33_scaffold_7 6399 6815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10641515..10641809 /note="source:scaffold_9_CACTA_0941 1598 1928" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10641886..10644598) /note="source:CACAO_M_E84258_F73_scaffold_10 1 2713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10647111..10650006) /note="source:CACAO_M_S_E102025_F12_scaffold_9 7260 10156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10650007..10655974) /note="source:INTACT209_F33_scaffold_5-int 4994 10958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10655975..10667560) /note="source:INTACT209_F33_scaffold_5-int 3 10980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10665563..10668454 /note="source:CACAO_M_E42299_F33_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10670589..10670601 /note="source:CACAO_M_E59600_F12_scaffold_9 5925 5936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10670602..10673531) /note="source:CACAO_M_E84252_F247_scaffold_10 1 2930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10680583..10680676 /note="source:CACAO_M_E59641_F12_scaffold_9 10407 10499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10680597..10680739) /note="source:CACAO_M_S_E64832_F14_scaffold_5 12581 12675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10681379..10681792) /note="source:INTACT242_F12_scaffold_1-int 3295 3691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10681977..10682148) /note="source:INTACT242_F12_scaffold_1-int 2974 3140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10682535..10683034) /note="source:CACAO_M_E3248_F5_scaffold_1 2638 3129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10683025..10689785 /note="source:CACAO_LINE_E_240_scaffold_9 1 6758" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(10689862..10690887) /note="source:CACAO_M_E3248_F5_scaffold_1 1653 2655" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10694014..10696749) /note="source:CACAO_M_E84250_F15_scaffold_10 1 2736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10697929..10701008) /note="source:CACAO_M_E84249_F306_scaffold_10 1 3080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10701951..10702501 /note="source:CACAO_M_S_E52921_F60_scaffold_5 5048 5599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10704083..10704758) /note="source:CACAO_M_S_E6027_F12_scaffold_2 10552 11228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10704859..10705602 /note="source:CACAO_M_E11662_F12_scaffold_2 9523 10265" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10705703..10706138 /note="source:INTACT215F_F14_scaffold_3-int 7204 7639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10707484..10707828 /note="source:CACAO_M_S_E52921_F60_scaffold_5 551 923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10708699..10709775 /note="source:CACAO_M_S_E52921_F60_scaffold_5 18438 19493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10711632..10714198) /note="source:CACAO_M_E58819_F24_scaffold_9 14113 16268" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10714007..10730085) /locus_tag="TCM_043877" /note="dbxref CacaoGD:Thecc1EG043877" mRNA complement(join(10714007..10714202,10725861..10725992, 10728689..10728902,10729218..10729392,10729520..10729641, 10729958..10730085)) /locus_tag="TCM_043877" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" mobile_element 10714198..10714616 /note="source:INTACT65_F13_scaffold_1-int 8365 8779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10714546..10714796) /note="source:CACAO_M_E58819_F24_scaffold_9 3008 3258" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10714796..10724539 /note="source:INTACT105_F2_scaffold_2-int 2726 12470" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(10725885..10725992,10728689..10728902, 10729218..10729392,10729520..10729641,10729958..10729962)) /locus_tag="TCM_043877" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19123.1" /translation="MSIGGAGRVVTAGSMGAWGQARHTRGNHRRQCASRLVEDLLEAM CLVDIASLWWKLKYDEKLGRSSRWSFESTWVEFHKEFQREDEQDIEATKLGSMHAIEI NALLVPFANCICLLDTKGQCVILVIRRHNPDAKLLSAMQLANGAQQNEETFAVVLKLE DTLKALVKAPIEGKIELSDQVGEQEDDWRLKLSLAVGSTRICHCEWF" gene complement(10730883..10736459) /locus_tag="TCM_043879" /note="dbxref CacaoGD:Thecc1EG043879" mRNA complement(join(10730883..10731514,10731709..10731833, 10733092..10733140,10733230..10733387,10733745..10733831, 10735018..10735098,10735213..10735276,10735501..10735564, 10735655..10735853,10735956..10736295)) /locus_tag="TCM_043879" /product="GHMP kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24440.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24440.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06717t00001" mRNA complement(join(10730983..10731514,10731709..10731833, 10733095..10733140,10733230..10733387,10733745..10733831, 10735018..10735098,10735213..10735276,10735501..10735564, 10735655..10735853,10735956..10736459)) /locus_tag="TCM_043879" /product="GHMP kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24440.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24440.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9298t8; inference alignment:Newbler:10:TSA:cgbaB_g06717t00001" CDS complement(join(10731292..10731514,10731709..10731833, 10733095..10733140,10733230..10733387,10733745..10733831, 10735018..10735098,10735213..10735276,10735501..10735564, 10735655..10735853,10735956..10736162)) /locus_tag="TCM_043879" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="GHMP kinase family protein isoform 2" /protein_id="EOY19125.1" /db_xref="Phytozome:POPTR_0010s24440.1" /db_xref="TAIR:AT3G54250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LAR8" /translation="MGETWVLMKTAQTPTNIAVIKYWGKRDESLILPVNDSISVTLDP AHLCTTTTVAVSPVFQQDRMWLNGKEISLSGGRFQSCLREIRRRASEVEDKEKGVKIE KKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDESQLSAIARQGS GSACRSLFGGFVKWIMGKEEDGSDSVAVQLVDEKHWDDLFIVIAVVSSRQKETSSTSG MRESVETSLLLQHRAKEVVPKRILKMEEAIKNHSFESFAQLTCADSNQFHAVCLDTCP PIFYMNDTSHRIISYVEKWNRSEGSPVAYTFDAGPNAVLIARNRKAAAQLLQRLLFYF PPKSDIDLDSYVIGDKSILQDAGLEGLKDVEALSPPPEIKENAAAQKYPGEVSYFICT RPGRGPVLLTNENLALLNPETGLPK" CDS complement(join(10731292..10731514,10731709..10731833, 10733092..10733140,10733230..10733387,10733745..10733831, 10735018..10735098,10735213..10735276,10735501..10735564, 10735655..10735853,10735956..10736162)) /locus_tag="TCM_043879" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="GHMP kinase family protein isoform 1" /protein_id="EOY19124.1" /db_xref="Phytozome:POPTR_0010s24440.1" /db_xref="TAIR:AT3G54250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LAR8" /translation="MGETWVLMKTAQTPTNIAVIKYWGKRDESLILPVNDSISVTLDP AHLCTTTTVAVSPVFQQDRMWLNGKEISLSGGRFQSCLREIRRRASEVEDKEKGVKIE KKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDESQLSAIARQGS GSACRSLFGGFVKWIMGKEEDGSDSVAVQLVDEKHWDDLFIVIAVVSSRQKETSSTSG MRESVETSLLLQHRAKEVVPKRILKMEEAIKNHSFESFAQLTCADSNQFHAVCLDTCP PIFYMNDTSHRIISYVEKWNRSEGSPQVAYTFDAGPNAVLIARNRKAAAQLLQRLLFY FPPKSDIDLDSYVIGDKSILQDAGLEGLKDVEALSPPPEIKENAAAQKYPGEVSYFIC TRPGRGPVLLTNENLALLNPETGLPK" mRNA complement(join(10731488..10731836,10733096..10733140, 10733230..10733387,10733745..10733831,10735018..10735098, 10735213..10735276,10735501..10735564,10735655..10735853, 10735956..10736459)) /locus_tag="TCM_043879" /product="GHMP kinase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24440.1" /inference="similar to AA sequence:ricco:29839.m000431" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc3t4; inference alignment:Newbler:10:TSA:cgbaB_g06717t00001" CDS complement(join(10731794..10731836,10733096..10733140, 10733230..10733387,10733745..10733831,10735018..10735098, 10735213..10735276,10735501..10735564,10735655..10735853, 10735956..10736162)) /locus_tag="TCM_043879" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29839.m000431" /codon_start=1 /product="GHMP kinase family protein isoform 3" /protein_id="EOY19126.1" /db_xref="TAIR:AT3G54250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LAR8" /translation="MGETWVLMKTAQTPTNIAVIKYWGKRDESLILPVNDSISVTLDP AHLCTTTTVAVSPVFQQDRMWLNGKEISLSGGRFQSCLREIRRRASEVEDKEKGVKIE KKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDESQLSAIARQGS GSACRSLFGGFVKWIMGKEEDGSDSVAVQLVDEKHWDDLFIVIAVVSSRQKETSSTSG MRESVETSLLLQHRAKEVVPKRILKMEEAIKNHSFESFAQLTCADSNQFHAVCLDTCP PIFYMNDTSHRIISYVEKWNRSEGSPRWHIHLMLGRMQF" mRNA complement(join(10731811..10731833,10733092..10733137, 10733229..10733387,10733745..10733831,10735018..10735098, 10735213..10735276,10735501..10735564,10735655..10735853, 10735956..10736459)) /locus_tag="TCM_043879" /product="Mevalonate diphosphate decarboxylase 1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24440.1" /inference="similar to AA sequence:ricco:29839.m000431" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7670t5; inference alignment:Newbler:10:TSA:cgbaB_g06717t00001" CDS complement(join(10733132..10733137,10733229..10733387, 10733745..10733831,10735018..10735098,10735213..10735276, 10735501..10735564,10735655..10735853,10735956..10736162)) /locus_tag="TCM_043879" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29839.m000431" /codon_start=1 /product="Mevalonate diphosphate decarboxylase 1 isoform 4" /protein_id="EOY19127.1" /db_xref="TAIR:AT2G38700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LAR8" /translation="MGETWVLMKTAQTPTNIAVIKYWGKRDESLILPVNDSISVTLDP AHLCTTTTVAVSPVFQQDRMWLNGKEISLSGGRFQSCLREIRRRASEVEDKEKGVKIE KKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDESQLSAIARQGS GSACRSLFGGFVKWIMGKEEDGSDSVAVQLVDEKHWDDLFIVIAVVSSRQKETSSTSG MRESVETSLLLQHRAKEVVPKRILKMEEAIKNHSFESFAQLTCADSNQFHAVCLDTCP PIFYMNDTSHRN" mobile_element complement(10742091..10743232) /note="source:CACAO_M_E42514_F40_scaffold_5 2341 3476" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10747591..10748135) /note="source:scaffold_1_CACTA_0009 13310 13838" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10747950..10748301) /note="source:CACAO_Mutator_E1998_scaffold_9 9859 10206" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(10748302..10751404) /note="source:CACAO_M_E84238_F15_scaffold_10 1 3103" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10750970..10756170 /locus_tag="TCM_043880" /note="dbxref CacaoGD:Thecc1EG043880" mRNA join(10750970..10751408,10751488..10752143, 10752260..10752890,10753993..10754201,10755660..10756170) /locus_tag="TCM_043880" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025215t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" mobile_element 10751295..10751425 /note="source:INTACT231_F12_scaffold_4-int 5386 5517" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(10751341..10751408,10751488..10752143, 10752260..10752890,10753993..10754201,10755660..10755724) /locus_tag="TCM_043880" /note="paralog of Thecc1EG025215t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19128.1" /translation="MSVNRDVAAIVMGLRGVPGRDSIHGGQWVDGIYKGGESRMWGVR SDLSFAGLMKLVENVVGVNSEIDDIELHALISTPRELSRPIIKDDEDVALILLEQRNV SAVYVSIKGPQTNVMSHEEVEQHGNQLNQNEIHRTHIPQHSVCNPQQWQLKYAQEFVQ SGRHTTFIEQLAAQFRSGCASNQLLASVQQMQRSGETIECVMPLSNENTTPKDNIVRL EGDSMTLEDNTTSDKGNEDLLPVGKMEPVKGVDVGDAQCDDPIYNNPIASENGIRSLD TLLDDSYQERRNARISHMWLIAGAERFFFQTIIIEESTCADDRLYKGRMFSSKVELKR VLNMLYLKEQFGIRVKKSCKGHYEVGYMDKACKFSVRATKLPDRGEYWQVQTFHEVHT CTVDGLQGRFSTASAKIIGELMSHKLRANGVTLRPKDIICEIRVQWGLECLYGKAWQT KDKCKREAIEFYTEYYKKTVLVEGYSGSIRSVGHPSEWDIPPHVKQIIVLPPPWRGQA GKPRRRRIPLVGEVLWGDKPCPNGVTCHVVAVLI" mobile_element complement(10751402..10754807) /note="source:scaffold_1_CACTA_0009 9374 12765" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10754878..10754950) /note="source:CACAO_Mutator_E1149_scaffold_5 10055 10126" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(10754920..10754932) /note="source:scaffold_1_CACTA_0009 9377 9403" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10754933..10756391 /note="source:CACAO_on_E193_scaffold_6 3876 5297" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(10755758..10759625) /note="source:CACAO_Mutator_E161_scaffold_1 1 3841" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(10756392..10757300) /note="source:scaffold_1_CACTA_0009 7332 9376" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10759538..10759876) /note="source:CACAO_M_E33977_F20_scaffold_4 5687 6000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10759692..10761374) /note="source:scaffold_1_CACTA_0009 1618 4537" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10762165..10762222 /note="source:CACAO_M_E22186_F143_scaffold_3 9927 9989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10762185..10762235) /note="source:scaffold_3_CACTA_0382 1846 1900" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10765595..10766734) /note="source:INTACT85_F9_scaffold_4-int 297 1445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10766728..10767010 /note="source:CACAO_Mutator_E1410_scaffold_6 5441 5717" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10767299..10767859 /note="source:CACAO_Mutator_E1410_scaffold_6 7594 8155" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10768596..10770126 /note="source:scaffold_1_CACTA_0009 11870 13830" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10770125..10770178 /note="source:CACAO_M_E33977_F20_scaffold_4 16499 16552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10770338..10770727 /note="source:scaffold_1_CACTA_0009 13429 13830" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10770723..10770780 /note="source:CACAO_M_E33977_F20_scaffold_4 16496 16552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10774540..10774594) /note="source:CACAO_M_E22186_F143_scaffold_3 9959 10014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10774701..10774747 /note="source:INTACT296_F13_scaffold_9-int 13204 13251" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10777671..10778493 /locus_tag="TCM_043884" /note="dbxref CacaoGD:Thecc1EG043884" mRNA 10777671..10778493 /locus_tag="TCM_043884" /product="Pectinesterase inhibitor-like protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G48020.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3982t1" CDS 10777887..10778444 /locus_tag="TCM_043884" /codon_start=1 /product="Pectinesterase inhibitor-like protein" /protein_id="EOY19129.1" /translation="MASLSRSSLLVALSFAIFFINPSFAKPRPNVTDAEIITICSKTP APSFCLKVLSNETLHANQTSLHGLAKISIELALASADETQVEISPLIKQAENYTVREG YTLCSQNYQEAVASLKDAKRLLSKHDYRGVRVQALAALEEAEACEHDLRIPAFNPSPL HDKNEEFKHYCNIIWAITNRLVDYY" mobile_element 10781172..10783592 /note="source:INTACT168_F46_scaffold_4-int 1 2450" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10783593..10784240) /note="source:INTACT726_F314_scaffold_5-int 13442 13899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10783657..10784032 /note="source:INTACT59_F126_scaffold_9-int 15 372" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10784660..10787134 /note="source:CACAO_M_E57346_F74_scaffold_9 2291 4723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10785129..10798708) /note="source:CACAO_M_S_E16721_F36_scaffold_2 5568 19186" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10798414..10798465 /note="source:INTACT59_F126_scaffold_9-int 13 41" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10798466..10798930) /note="source:INTACT622F_F362_scaffold_4-int 12325 12664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10799423..10800481 /note="source:CACAO_M_E57346_F74_scaffold_9 2291 3306" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10800477..10801178 /note="source:CACAO_M_E57346_F74_scaffold_9 3412 4111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10801179..10803255) /note="source:INTACT259_F188_scaffold_4-int 277 2316" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10803385..10803659) /note="source:INTACT259_F188_scaffold_4-int 1 280" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10808970..10810589 /note="source:CACAO_M_S_E50417_F7_scaffold_4 1 1485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10810801..10811067 /note="source:CACAO_M_E50311_F328_scaffold_7 5086 5354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10811052..10811111 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5654 5714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10811886..10812527 /note="source:CACAO_M_E50311_F328_scaffold_7 5822 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10814782..10817086 /locus_tag="TCM_043887" /note="dbxref CacaoGD:Thecc1EG043887" mRNA join(10814782..10814945,10815627..10815982, 10816160..10817086) /locus_tag="TCM_043887" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026338t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS join(10815627..10815982,10816160..10816472) /locus_tag="TCM_043887" /note="paralog of Thecc1EG026338t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY19130.1" /translation="MQIHHFNHHHPLNFHEVQKEDENLGCKACKLEIHGPAYIYKECG YYLHKACTELPNEVVYPLHPQHALNLLTRSLNTRHFICDEYGDISDGFLYFCFECQFK VDVKCAGLNAHRNQGQGFPEKMQHPFHPLQLLRAKIFLTKSCHAYDFLFVGISYSCLE CDLHLHPTCLNSMRQGLKFNLRTCNLDFFYFGIGCQMLFNGYTCLRCDESCAGPSVSV LRLI" mobile_element complement(10818378..10819399) /note="source:CACAO_M_E69822_F134_scaffold_9 1945 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10819687..10821595) /note="source:CACAO_M_S_E109813_F172_scaffold_9 1 1909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10824277..10827280) /note="source:CACAO_M_E35237_F277_scaffold_5 1 3005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10832401..10835573) /note="source:CACAO_M_E84232_F328_scaffold_10 1 3173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10836508..10839076) /note="source:CACAO_M_S_E144328_F74_scaffold_10 1 2569" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10843378..10845276) /note="source:INTACT15_F109_scaffold_3-int 2718 4624" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10845827..10848473) /note="source:INTACT15_F109_scaffold_3-int 113 4624" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10849597..10850509) /note="source:CACAO_M_E33977_F20_scaffold_4 15618 16543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10851229..10851390 /note="source:CACAO_Mutator_E1149_scaffold_5 1 162" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10851390..10851644 /note="source:CACAO_M_S_E5285_F300_scaffold_1 13582 13851" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10851457..10852002 /note="source:INTACT697_F302_scaffold_2-int 187 718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10852537..10852761 /note="source:INTACT697_F302_scaffold_2-int 15252 15475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10852756..10854041 /note="source:scaffold_3_CACTA_0384 107 1495" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10854056..10857825 /note="source:CACAO_on_S_E176_scaffold_5 40 3696" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(10857811..10858943) /note="source:CACAO_on_E193_scaffold_6 3651 4768" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10858188..10863388 /note="source:CACAO_on_S_E176_scaffold_5 1401 8337" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10865585..10865899 /note="source:CACAO_Again_on_S_E187_scaffold_5 678 1003" /mobile_element_type="transposon:TIR/hAT" gene 10866300..10867951 /locus_tag="TCM_043895" /note="dbxref CacaoGD:Thecc1EG043895" mRNA join(10866300..10866582,10866722..10867093, 10867423..10867951) /locus_tag="TCM_043895" /product="Pathogenesis-related protein P2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026326t1" /inference="similar to AA sequence:frave:gene08424" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg3994t1" CDS join(10866334..10866582,10866722..10867093, 10867423..10867620) /locus_tag="TCM_043895" /note="dbxref frave:gene08424; paralog of Thecc1EG026326t1" /codon_start=1 /product="Pathogenesis-related protein P2" /protein_id="EOY19131.1" /db_xref="TAIR:AT3G04720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P32045" /translation="MKRLSLSILFLASLVAFAAAQSASDVIAYWTDYNTTDNGWTIPS FCAAVDGDKPLEWRSKYGWTGFCGPNATQGVDSCGKCLNVTNTATGAFETVRIVDTCG AGGLELDLETAFKPIDSDGKGYQDGHLTVDYEFVDCDADDDVPDATNVTAYWTDYNAT NNGWVIPPFCAGVDGDKPLEWRSKYGWTGFCGPVGPTGVDACGKCLKITNTETKDEEI VRIVDTCGTGGLELDLETAFKPIDTNGNGIKLGHLTVDYKIVDCEDDAVLVYSQ" mobile_element 10875490..10875539 /note="source:scaffold_8_CACTA_0860 5309 5357" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10877093..10877725) /note="source:CACAO_M_E50311_F328_scaffold_7 5822 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10877826..10880472) /note="source:CACAO_M_E50311_F328_scaffold_7 3291 5867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10880572..10882223) /note="source:CACAO_M_E65029_F82_scaffold_9 4277 5715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10881991..10883284 /note="source:CACAO_M_E49492_F328_scaffold_7 5388 6671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10883270..10884142) /note="source:CACAO_M_E50311_F328_scaffold_7 5810 6458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10884411..10884689) /note="source:CACAO_M_E50311_F328_scaffold_7 5573 5852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10884770..10887081) /note="source:CACAO_M_E50311_F328_scaffold_7 3290 5579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10888010..10895272) /note="source:CACAO_LINE_E_34_scaffold_10 1 7263" /mobile_element_type="retrotransposon:LINE/L1" gene 10894890..10915440 /locus_tag="TCM_043898" /note="dbxref CacaoGD:Thecc1EG043898" mRNA join(10894890..10895034,10895114..10895222, 10900615..10900835,10900926..10901007,10903640..10903747, 10903834..10903901,10906460..10906482,10907845..10907899, 10908000..10908132,10908548..10908606,10908692..10908760, 10909993..10910106,10910517..10910538,10911008..10911075, 10913406..10913491,10914178..10914307,10914449..10914550, 10914623..10915440) /locus_tag="TCM_043898" /product="Sodium Bile acid symporter family isoform 1" /inference="alignment:exonerate- protein:2:ricco:29930.m000625" /inference="similar to AA sequence:Phytozome:GSVIVT01011284001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00824t00001" mRNA join(10894890..10895034,10895114..10895222, 10900615..10900835,10900926..10901007,10903640..10903747, 10903834..10903901,10908054..10908132,10908548..10908606, 10908692..10908760,10909993..10910106,10910517..10910538, 10911008..10911075,10913406..10913491,10914178..10914550, 10914623..10915440) /locus_tag="TCM_043898" /product="Sodium Bile acid symporter family isoform 3" /inference="alignment:exonerate- protein:2:ricco:29930.m000625" /inference="similar to AA sequence:Phytozome:GSVIVT01011284001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:PASA:2:TSA:puevd3b042354t1a3; inference alignment:Newbler:10:TSA:cgbaL_g00824t00001" mRNA join(10894890..10895034,10895114..10895222, 10900615..10900835,10900926..10901007,10903640..10903747, 10903834..10903901,10908054..10908132,10908548..10908606, 10908692..10908760,10909993..10910106,10910517..10910538, 10911008..10911075,10914178..10914307,10914449..10914550, 10914623..10915440) /locus_tag="TCM_043898" /product="Sodium Bile acid symporter family isoform 4" /inference="alignment:exonerate- protein:2:ricco:29930.m000625" /inference="similar to AA sequence:Phytozome:GSVIVT01011284001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:PASA:2:TSA:puevd3b042354t1a2; inference alignment:Newbler:10:TSA:cgbaL_g00824t00001" CDS join(10894963..10895034,10895114..10895222, 10900615..10900835,10900926..10901007,10903640..10903747, 10903834..10903901,10906460..10906482,10907845..10907899, 10908000..10908132,10908548..10908606,10908692..10908760, 10909993..10910106,10910517..10910538,10911008..10911075, 10913406..10913491,10914178..10914307,10914449..10914550, 10914623..10914697) /locus_tag="TCM_043898" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Sodium Bile acid symporter family isoform 1" /protein_id="EOY19132.1" /db_xref="Phytozome:GSVIVT01011284001" /db_xref="TAIR:AT3G56160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TCW3" /translation="MGSLEKGIKAGLSPTAIERKDFFKGELSTVAGELPEVAGGGPAA GQRVDYVWWGALGTHVVCPLQRDAPLLQSTISVFESSMAVTIQSIILTPPRTATTPFP CLKTSHLLSRSLRINPSRSFATPIRSCKPSDETHGSGLANGLNWTKPLLNFAADNFLP LALIGGVAFGLANPTLGCLADKYYLSKFSTFGIFFVSGLTLRSDAIGAAAKAWPVGVF GLDVDWFWPYSVLLEEEGHREQHMVIWKSNDAGVHVLKKYRLLSLQCSILLFTPYFSR LILQIHLQPQEFVTGLAIFNCMPTTLSSGVALTQLAGGNSALALAMTVMSNMIGILII PFSISKFIADGVGVSVPTAQLLRSLVLTLLIPLILGKVLRESFRGLADYVDHNRKLYS RISAVFLSLVPWIQVSRSRSLLLMVKPTVFIVAIGIGALLHLVLLAFNTLAIRSLSAV TGGSESIFAKKENAQAALLVASQKTLPVMVAVVEQLGGAFGESGLLVLPCVAAHIIQI ILDSFLVNFWLRMDLPSNTAKVA" CDS join(10894963..10895034,10895114..10895222, 10900615..10900835,10900926..10901007,10903640..10903747, 10903834..10903901,10908054..10908132,10908548..10908606, 10908692..10908760,10909993..10910106,10910517..10910538, 10911008..10911075,10913406..10913491,10914178..10914322) /locus_tag="TCM_043898" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Sodium Bile acid symporter family isoform 3" /protein_id="EOY19134.1" /db_xref="Phytozome:GSVIVT01011284001" /db_xref="TAIR:AT3G56160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SCS0" /translation="MGSLEKGIKAGLSPTAIERKDFFKGELSTVAGELPEVAGGGPAA GQRVDYVWWGALGTHVVCPLQRDAPLLQSTISVFESSMAVTIQSIILTPPRTATTPFP CLKTSHLLSRSLRINPSRSFATPIRSCKPSDETHGSGLANGLNWTKPLLNFAADNFLP LALIGGVAFGLANPTLGCLADKYYLSKFSTFGIFFVSGLTLRSDAIGAAAKAWPVGVF GLCSILLFTPYFSRLILQIHLQPQEFVTGLAIFNCMPTTLSSGVALTQLAGGNSALAL AMTVMSNMIGILIIPFSISKFIADGVGVSVPTAQLLRSLVLTLLIPLILGKVLRESFR GLADYVDHNRKLYSRISAVFLSLVPWIQVSRSRSLLLMVKPTVFIVAIGIGALLHLVL LAFNTLAIRSLSAVTGGSESIFAKKENAQAALLVASQVAIY" CDS join(10894963..10895034,10895114..10895222, 10900615..10900835,10900926..10901007,10903640..10903747, 10903834..10903901,10908054..10908132,10908548..10908606, 10908692..10908760,10909993..10910106,10910517..10910538, 10911008..10911075,10914178..10914207) /locus_tag="TCM_043898" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Sodium Bile acid symporter family isoform 4" /protein_id="EOY19135.1" /db_xref="Phytozome:GSVIVT01011284001" /db_xref="TAIR:AT3G56160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SCS0" /translation="MGSLEKGIKAGLSPTAIERKDFFKGELSTVAGELPEVAGGGPAA GQRVDYVWWGALGTHVVCPLQRDAPLLQSTISVFESSMAVTIQSIILTPPRTATTPFP CLKTSHLLSRSLRINPSRSFATPIRSCKPSDETHGSGLANGLNWTKPLLNFAADNFLP LALIGGVAFGLANPTLGCLADKYYLSKFSTFGIFFVSGLTLRSDAIGAAAKAWPVGVF GLCSILLFTPYFSRLILQIHLQPQEFVTGLAIFNCMPTTLSSGVALTQLAGGNSALAL AMTVMSNMIGILIIPFSISKFIADGVGVSVPTAQLLRSLVLTLLIPLILGKVLRESFR GLADYVDHNRKLYSRISAVFLSLAFTPRIVSF" mobile_element 10896864..10897938 /note="source:CACAO_hAT_E3351_scaffold_8 1 1036" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(10899759..10899834) /note="source:scaffold_8_CACTA_0859 16186 16262" /mobile_element_type="transposon:TIR/CACTA" mRNA join(<10900684..10900835,10900926..10901007, 10903640..10903747,10903834..10903901,10908054..10908132, 10908548..10908606,10908692..10908760,10909993..10910106, 10910517..10910538,10911008..10911075,10913406..10913491, 10914178..10914307,10914449..10914550,10914623..10914917) /locus_tag="TCM_043898" /product="Sodium Bile acid symporter family isoform 2" /inference="alignment:exonerate- protein:2:ricco:29930.m000625" /inference="similar to AA sequence:Phytozome:GSVIVT01011284001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00824t00001; inference alignment:Newbler:10:TSA:cgbaL_g00824t00001" CDS join(<10900686..10900835,10900926..10901007, 10903640..10903747,10903834..10903901,10908054..10908132, 10908548..10908606,10908692..10908760,10909993..10910106, 10910517..10910538,10911008..10911075,10913406..10913491, 10914178..10914307,10914449..10914550,10914623..10914697) /locus_tag="TCM_043898" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Sodium Bile acid symporter family isoform 2" /protein_id="EOY19133.1" /db_xref="Phytozome:GSVIVT01011284001" /db_xref="TAIR:AT3G56160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TCW3" /translation="TIQSIILTPPRTATTPFPCLKTSHLLSRSLRINPSRSFATPIRS CKPSDETHGSGLANGLNWTKPLLNFAADNFLPLALIGGVAFGLANPTLGCLADKYYLS KFSTFGIFFVSGLTLRSDAIGAAAKAWPVGVFGLCSILLFTPYFSRLILQIHLQPQEF VTGLAIFNCMPTTLSSGVALTQLAGGNSALALAMTVMSNMIGILIIPFSISKFIADGV GVSVPTAQLLRSLVLTLLIPLILGKVLRESFRGLADYVDHNRKLYSRISAVFLSLVPW IQVSRSRSLLLMVKPTVFIVAIGIGALLHLVLLAFNTLAIRSLSAVTGGSESIFAKKE NAQAALLVASQKTLPVMVAVVEQLGGAFGESGLLVLPCVAAHIIQIILDSFLVNFWLR MDLPSNTAKVA" mobile_element complement(10911994..10912088) /note="source:CACAO_M_S_E16386_F9_scaffold_2 2050 2142" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10917856..10920579 /locus_tag="TCM_043901" /note="dbxref CacaoGD:Thecc1EG043901" mRNA join(10917856..10918076,10918741..10919003, 10919102..10919313,10919569..10919833,10920064..10920579) /locus_tag="TCM_043901" /product="Catalytic, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g08350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022567t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033830001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00723t00004" mRNA join(10918161..10918185,10918741..10919003, 10919102..10919313,10919569..10919833,10920064..10920512) /locus_tag="TCM_043901" /product="Catalytic, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g08350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022567t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033830001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4001t3; alternateUTRof:Thecc1EG043901t1; inference alignment:Newbler:10:TSA:cgbaL_g00723t00004; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc247t7_C2" CDS join(10918743..10919003,10919102..10919313, 10919569..10919833,10920064..10920360) /locus_tag="TCM_043901" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022567t1" /codon_start=1 /product="Catalytic, putative isoform 1" /protein_id="EOY19136.1" /db_xref="Phytozome:GSVIVT01033830001" /db_xref="TAIR:AT2G36290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5A5" /translation="MHKGISLILLIGLLAWTYQAIQPPPPKICGSPGGPPVTATRIKL RDGRHLAYKEHGLSKEMAKHKIIFVHGFSSCRHDEVIVANLSLELVEELGVYCVSFDR PGYGESDPDPRRTLKSLALDIEELADQLRLGPKFYIIGFSMGGQSVWGCLKYIPHRLA GATLLAPVINYWWPGFPANLSTEAYYQQLPQDQWALRVAHYLPFLVYWWNTQKLFPAS AVQARRPEIFSPQDIQLLPKIAYRHNHRAVVSQQGVFESLHRDMRIGFGKWEFDPLDL ESPFPNNEGSVHLWMGDEDGFVPVILQRYIAKRLPWIQYHELPGAGHLFPYADGMSEA IIRALLVGQK" CDS join(10918743..10919003,10919102..10919313, 10919569..10919833,10920064..10920360) /locus_tag="TCM_043901" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022567t1" /codon_start=1 /product="Catalytic, putative isoform 1" /protein_id="EOY19137.1" /db_xref="Phytozome:GSVIVT01033830001" /db_xref="TAIR:AT2G36290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5A5" /translation="MHKGISLILLIGLLAWTYQAIQPPPPKICGSPGGPPVTATRIKL RDGRHLAYKEHGLSKEMAKHKIIFVHGFSSCRHDEVIVANLSLELVEELGVYCVSFDR PGYGESDPDPRRTLKSLALDIEELADQLRLGPKFYIIGFSMGGQSVWGCLKYIPHRLA GATLLAPVINYWWPGFPANLSTEAYYQQLPQDQWALRVAHYLPFLVYWWNTQKLFPAS AVQARRPEIFSPQDIQLLPKIAYRHNHRAVVSQQGVFESLHRDMRIGFGKWEFDPLDL ESPFPNNEGSVHLWMGDEDGFVPVILQRYIAKRLPWIQYHELPGAGHLFPYADGMSEA IIRALLVGQK" gene complement(10923356..10929285) /locus_tag="TCM_043902" /note="dbxref CacaoGD:Thecc1EG043902" mRNA complement(join(10923356..10923830,10926635..10926742, 10926991..10927176,10927278..10927341,10927487..10927992, 10929096..10929285)) /locus_tag="TCM_043902" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002461t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS complement(join(10923732..10923830,10926635..10926742, 10926991..10927176,10927278..10927341,10927487..10927770)) /locus_tag="TCM_043902" /note="paralog of Thecc1EG002461t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19138.1" /translation="MLSLTNVGAFPNPSTHPQRQQANDLPSKPPFLFDASTEPVINVT FAHDSHGSTSVDLGVSGDGTSSRSRGRGPGVGIHTPIDPTQRLRITPLVHSPWLTWKK IANNVKDLMLKKFKALNEDFFVLRIWNKICSDRLRDMLSEERTQARKEANTKNIMDCK GISRHWITNEVWDALIDTANEMNRDVSFVQVFNRTHKHLRGHGDFIDSKSKTINGKDF QNPSSLFIAIGSAFVVVCCQWQRKLRNP" mobile_element complement(10926233..10926541) /note="source:INTACT674_F296_scaffold_6-int 4601 4910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10932339..10937372 /note="source:INTACT160_F4_scaffold_7-int 5754 10620" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10937375..10945928) /note="source:CACAO_M_S_E5046_F335_scaffold_1 4125 12689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10949471..10952215) /note="source:CACAO_M_E33933_F9_scaffold_4 22278 25029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10952214..10957995 /note="source:INTACT85_F9_scaffold_4-int 5531 11319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10959062..10960936) /note="source:CACAO_M_E3248_F5_scaffold_1 1651 3483" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10961241..10961620) /note="source:INTACT103_F9_scaffold_4-int 10713 11092" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10961624..10964567) /note="source:CACAO_M_E57385_F197_scaffold_9 1803 4720" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10964567..10964984) /note="source:INTACT103_F9_scaffold_4-int 10312 10712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10967369..10967790) /note="source:INTACT563_F255_scaffold_10-int 3660 4075" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10969185..10969534 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18557 18881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10969636..10969705 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18869 18939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10969663..10970997) /note="source:CACAO_M_E3248_F5_scaffold_1 2189 3482" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10970998..10972122 /note="source:INTACT69_F12_scaffold_7-int 1 1082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10972117..10972667 /note="source:INTACT170_F12_scaffold_5-int 6274 6827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10972663..10972779) /note="source:CACAO_M_E33933_F9_scaffold_4 3550 3666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10972789..10981612) /note="source:CACAO_M_S_E54692_F12_scaffold_5 2 8922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10981613..10982159 /note="source:INTACT170_F12_scaffold_5-int 6279 6827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10982091..10982166) /note="source:CACAO_M_E3248_F5_scaffold_1 6068 6145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10982155..10985449) /note="source:CACAO_M_E33933_F9_scaffold_4 382 3666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10985457..10988605 /note="source:CACAO_M_E10871_F51_scaffold_2 1 3126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10988607..10988940) /note="source:CACAO_M_S_E101224_F9_scaffold_9 57 390" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10989057..10989199 /note="source:CACAO_M_S_E173_F215_scaffold_1 3168 3310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10990003..10990107) /note="source:CACAO_M_S_E64832_F14_scaffold_5 2983 3092" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10990108..10992927) /note="source:CACAO_M_E57391_F87_scaffold_9 1 2810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10992661..10996161 /note="source:CACAO_M_E11415_F328_scaffold_2 13521 17064" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10992928..10995650) /note="source:INTACT776_F83_scaffold_2-int 2471 5193" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10993616..10998013) /note="source:CACAO_M_E10495_F87_scaffold_2 1 3324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10998021..10999754 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18701 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10999677..10999778) /note="source:CACAO_M_E33282_F13_scaffold_4 6336 6431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10999757..11002159) /note="source:CACAO_M_E43175_F215_scaffold_5 1 2434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11002170..11002799) /note="source:CACAO_M_S_E173_F215_scaffold_1 1717 2345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11004648..11004738) /note="source:CACAO_M_E3248_F5_scaffold_1 2839 2926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11006290..11007643 /note="source:CACAO_M_E43175_F215_scaffold_5 4028 5378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11011770..11012114) /note="source:CACAO_M_E35674_F13_scaffold_5 3331 3671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11012106..11012157) /note="source:CACAO_M_E35674_F13_scaffold_5 3114 3165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11013226..11013563 /note="source:INTACT215F_F14_scaffold_3-int 12572 12908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11015341..11015478) /note="source:CACAO_on_E33_A_scaffold_3 9 136" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 11017093..11018947 /note="source:CACAO_M_S_E19555_F4_scaffold_3 1 1860" /mobile_element_type="retrotransposon:LTR/Copia" gene 11019927..11033338 /locus_tag="TCM_043913" /note="dbxref CacaoGD:Thecc1EG043913" mRNA join(11019927..11020286,11020723..11020858, 11020951..11021223,11023224..11023368,11025846..11026085, 11027052..11027184,11030123..11030304,11031191..11031234, 11031885..11031997,11032497..11033338) /locus_tag="TCM_043913" /product="Zn-dependent exopeptidases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011279001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014603t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011279001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b042368t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g06071t00001" mRNA join(11019959..11020286,11020723..11020858, 11020951..11021223,11023224..11023368,11025846..11026085, 11027052..11027184,11030123..11030304,11031885..11031997, 11032497..11033338) /locus_tag="TCM_043913" /product="Zn-dependent exopeptidases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011279001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014603t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011279001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4028t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4028t2" CDS join(11020052..11020286,11020723..11020858, 11020951..11021223,11023224..11023368,11025846..11026085, 11027052..11027184,11030123..11030304,11031885..11031997, 11032497..11032602) /locus_tag="TCM_043913" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014603t1" /codon_start=1 /product="Zn-dependent exopeptidases superfamily protein isoform 1" /protein_id="EOY19139.1" /db_xref="Phytozome:GSVIVT01011279001" /db_xref="TAIR:AT5G04710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ26" /translation="MAAISRVQLLHHPSSVFSRFPHSPSSSFAFSLCRRKFSSSAPLL CSLSSSSSSSSTNASIVGDLLDYLNESWTQFHATAEAKRQLIAAGFHLLNENDEWDLK PGGRYFFTRNMSCLVAFAIGEKYIVGNGFHVIAAHTDSPCLKLKPKSASSKSNYLMLN VQTYGGGLWHTWFDRDLSVAGRVIVRANDGSFLHKLVKVKRPLLRVPTLAIHLNRTVN TDGFKPNLETHLVPLLATKPEEEAAEPKEKSSLSSKAVHHPLLMQILSDELCCDVDDI VNIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCALRALVDSCGSPGDLSSEHAIR MVALFDNEEVGSDSFQGAGAPTMFQAMRRIVGSLANSYGGGSAFDRAIRQSFLVSADM AHGVHPNFMDKHEEHHRPEMRKGLVIKHNANQRYATSGVTAFLFKEVGKIHNLPTQDF VVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREVCGKDDIDIAYKHFKAFYQ IFSSIDRKLIVD" CDS join(11020052..11020286,11020723..11020858, 11020951..11021223,11023224..11023368,11025846..11026085, 11027052..11027184,11030123..11030304,11031191..11031205) /locus_tag="TCM_043913" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014603t1" /codon_start=1 /product="Zn-dependent exopeptidases superfamily protein isoform 2" /protein_id="EOY19140.1" /db_xref="Phytozome:GSVIVT01011279001" /db_xref="TAIR:AT5G04710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ26" /translation="MAAISRVQLLHHPSSVFSRFPHSPSSSFAFSLCRRKFSSSAPLL CSLSSSSSSSSTNASIVGDLLDYLNESWTQFHATAEAKRQLIAAGFHLLNENDEWDLK PGGRYFFTRNMSCLVAFAIGEKYIVGNGFHVIAAHTDSPCLKLKPKSASSKSNYLMLN VQTYGGGLWHTWFDRDLSVAGRVIVRANDGSFLHKLVKVKRPLLRVPTLAIHLNRTVN TDGFKPNLETHLVPLLATKPEEEAAEPKEKSSLSSKAVHHPLLMQILSDELCCDVDDI VNIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCALRALVDSCGSPGDLSSEHAIR MVALFDNEEVGSDSFQGAGAPTMFQAMRRIVGSLANSYGGGSAFDRAIRQSFLVSADM AHGVHPNFMDKHEEHHRPEMRKGLVIKHNANQRYATSGVTAFLFKEVGKIHNLPTQGW WM" mobile_element 11027961..11028163 /note="source:scaffold_5_CACTA_0608 1 228" /mobile_element_type="transposon:TIR/CACTA" gene complement(11032744..11033308) /locus_tag="TCM_043915" /note="dbxref CacaoGD:Thecc1EG043915" mRNA complement(join(11032744..11033042,11033295..11033308)) /locus_tag="TCM_043915" /product="Binding" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039523" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage" CDS complement(11032803..11033018) /locus_tag="TCM_043915" /codon_start=1 /product="Binding" /protein_id="EOY19141.1" /translation="MEKLNSQLYWQNYCIIKENERLRRKAQQLNQENQAMLSELKQKL AKGRSNPEQGSCLSSTSNPNYSDPSKP" mobile_element complement(11034222..11034416) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3801 3964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11039580..11040190 /note="source:CACAO_M_E12058_F3_scaffold_2 4158 4796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11040191..11040330) /note="source:INTACT766_F325_scaffold_5-int 9890 10008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11040335..11042881 /note="source:CACAO_M_E979_F134_scaffold_1 399 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11043634..11045162) /note="source:CACAO_M_E84217_F264_scaffold_10 1 1529" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11045163..11045467 /note="source:CACAO_M_E42395_F3_scaffold_5 18613 18889" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11046053..11046097) /note="source:INTACT766_F325_scaffold_5-int 9229 9275" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11046059..11046538) /note="source:CACAO_on_E18_scaffold_1 5140 5634" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(11046539..11049708) /note="source:scaffold_6_CACTA_0699 15267 18435" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11049669..11051431) /note="source:CACAO_M_S_E146091_F272_scaffold_11 6710 8521" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11049709..11051963 /note="source:CACAO_M_E22758_F79_scaffold_3 490 3002" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11051679..11066352) /locus_tag="TCM_043917" /note="dbxref CacaoGD:Thecc1EG043917" mRNA complement(join(11051679..11052272,11054849..11054928, 11055551..11055623,11056893..11056961,11057049..11057176, 11058398..11058549,11065846..11066352)) /locus_tag="TCM_043917" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage" CDS complement(join(11051890..11052272,11054849..11054928, 11055551..11055623,11056893..11056961,11057049..11057176, 11058398..11058531)) /locus_tag="TCM_043917" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19142.1" /translation="MVALIPPLIPTYCALMPSVEIISGDVDVRSLLQSMICSSLAASA FLGENATLKGQVIVKRILGQDAPKEMLMGMCSNDFWLCWMKWDCKCTMLILGCFVFRI MDDRLKAIEQRFIPCDFDILSVASALDDDFDVAAYEGEGLSDNNKAQVGLRSIAFSVL ICMVALIPLVILAYNALMPSVEITLSDVDVRVYFNVVHDLILCQLLRHEHDLFLYQRL CLECDLILYRLATVRDLTIPRERPLTLVCLNMTCIEYGMIRFEFEIMVTVKPDLIKSC HDIHVMDSMFTY" mobile_element 11052994..11053063 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3872 3942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11059268..11059328 /note="source:CACAO_M_S_E4413_F3_scaffold_1 2997 3057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11060586..11062998 /note="source:INTACT607_F3_scaffold_4-int 11438 13859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11062999..11063046) /note="source:CACAO_M_S_E4413_F3_scaffold_1 16823 16875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11063659..11063824 /note="source:scaffold_8_CACTA_0858 14567 14727" /mobile_element_type="transposon:TIR/CACTA" gene complement(11064169..11065702) /locus_tag="TCM_043918" /note="dbxref CacaoGD:Thecc1EG043918" mRNA complement(11064169..11065702) /locus_tag="TCM_043918" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.31 coverage" CDS complement(11065073..11065354) /locus_tag="TCM_043918" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19143.1" /translation="MQGDRGGVHCCQWCWASAFLGRYCSCSACWLLLYFCVVQEIYEL PCCYWQVMLFPAPIQHLNAAKEIVGTWEESDVVSWCFFSSRIFVEYLTS" gene complement(11065999..11073992) /locus_tag="TCM_043919" /note="dbxref CacaoGD:Thecc1EG043919" mRNA complement(join(11065999..11066976,11067102..11067144, 11068371..11068740,11070094..11070802,11073423..11073917)) /locus_tag="TCM_043919" /product="Single-stranded nucleic acid binding R3H protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g34810.2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24400.3" /inference="similar to AA sequence:Phytozome:GSVIVT01011273001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9275t1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9275t1; inference alignment:Newbler:10:TSA:cgbaL_g01496t00001" mRNA complement(join(11066725..11066976,11067102..11067460, 11068371..11068740,11070094..11070802,11073423..11073992)) /locus_tag="TCM_043919" /product="Single-stranded nucleic acid binding R3H protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24400.3" /inference="similar to AA sequence:Phytozome:GSVIVT01011273001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01496t00001; inference alignment:Newbler:10:TSA:cgbaL_g01496t00001" CDS complement(join(11066873..11066976,11067102..11067144, 11068371..11068740,11070094..11070802,11073423..11073657)) /locus_tag="TCM_043919" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Single-stranded nucleic acid binding R3H protein isoform 2" /protein_id="EOY19145.1" /db_xref="Phytozome:GSVIVT01011273001" /db_xref="TAIR:AT3G56680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVQ2" /translation="MDGSVVEDLGAPESWEVADLDATMSRLMLSSNKEPKPELPDAIS SSASSAEKVIAEDVTNQVDQFLREAIQNPRERLSILRMEQDVEKFIHDPTQQQLEFQQ LPTSYLRLAAHRVAQHYSLQSMVLLDNNLPDGSGFRIIVRKTSECRLPPIRLADIPVN LPSEDPGVVKVAIKQRPQKRSQVSCNSNSNSLKTNNSKSVEERKEEYNRARARIFNSN SSSSGSGGKPENELRLQDVSYHGSSGMPKMEEKPVSVVSDINSSRGLIESSTSSSRLA RSRTEKEPIGRSKPNNRVAIFRDRETDRKDPDYDRSYDRYLQRFDPGFGFNSGPYTMQ PMYTPAINYNTEFPQLGTTHRPQISTEHQPRALPQHIPGPWAAPSTATGISYGHPETM MPPFNPNHVGAHSTSAIYLHSSQYPCQRPGMPFIHPHEHVHQPFSQRSELSELRMFIN DEVIRGAKGNCEDIFYESGEFAAVLWNLLMCSISLW" CDS complement(join(11067410..11067460,11068371..11068740, 11070094..11070802,11073423..11073657)) /locus_tag="TCM_043919" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Single-stranded nucleic acid binding R3H protein isoform 1" /protein_id="EOY19144.1" /db_xref="Phytozome:GSVIVT01011273001" /db_xref="TAIR:AT3G56680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVQ2" /translation="MDGSVVEDLGAPESWEVADLDATMSRLMLSSNKEPKPELPDAIS SSASSAEKVIAEDVTNQVDQFLREAIQNPRERLSILRMEQDVEKFIHDPTQQQLEFQQ LPTSYLRLAAHRVAQHYSLQSMVLLDNNLPDGSGFRIIVRKTSECRLPPIRLADIPVN LPSEDPGVVKVAIKQRPQKRSQVSCNSNSNSLKTNNSKSVEERKEEYNRARARIFNSN SSSSGSGGKPENELRLQDVSYHGSSGMPKMEEKPVSVVSDINSSRGLIESSTSSSRLA RSRTEKEPIGRSKPNNRVAIFRDRETDRKDPDYDRSYDRYLQRFDPGFGFNSGPYTMQ PMYTPAINYNTEFPQLGTTHRPQISTEHQPRALPQHIPGPWAAPSTATGISYGHPETM MPPFNPNHVGAHSTSAIYLHSSQYPCQRPGMPFIHPHEHVHQPFSQSHQQQPDASFGL ARPR" mobile_element complement(11077616..11078281) /note="source:CACAO_M_E2982_F85_scaffold_1 2672 3335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11078385..11079537) /note="source:CACAO_M_E12225_F323_scaffold_3 1 1154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11080051..11081300 /note="source:CACAO_M_E13038_F22_scaffold_3 3 1238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11080254..11081836) /note="source:CACAO_M_E5702_F90_scaffold_2 11787 13346" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11081300..11082781) /note="source:INTACT120_F22_scaffold_3-int 10023 11537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11082782..11085286 /note="source:INTACT116_F12_scaffold_7-int 1 2513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11096837..11096920 /note="source:CACAO_M_E14347_F12_scaffold_3 8773 8837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11096862..11096927) /note="source:CACAO_M_E14347_F12_scaffold_3 8772 8836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11096928..11096954 /note="source:scaffold_4_CACTA_0490 3111 3198" /mobile_element_type="transposon:TIR/CACTA" gene 11101008..11110180 /locus_tag="TCM_043921" /note="dbxref CacaoGD:Thecc1EG043921" mRNA join(11101008..11103312,11103497..11103770, 11104871..11105367,11109948..11110180) /locus_tag="TCM_043921" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038026t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13660.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc497t2" mRNA join(11101204..11103312,11103497..11103770, 11104372..11105367,11105743..11105906) /locus_tag="TCM_043921" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038026t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13660.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc494t2; alternateUTRof:Thecc1EG043921t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc497t2" CDS 11101223..11103289 /locus_tag="TCM_043921" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG038026t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /protein_id="EOY19146.1" /db_xref="Phytozome:POPTR_0016s13660.1" /db_xref="TAIR:AT3G08820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR82" /translation="MLSTLNSATSSCSKVTEITKRILGGFTSVRHLKQVHAALFRLGL HQHNYLLNIILKATFHFGQTNYACLIFNQTKQPNIYLWNTMIQGLVSGDCFLEAAQFY ASMRSQGFLPNSFTFPFVLKAYARLLDLQLGIRIHALVVKLGFDCDIFVKTGLLCLYA KCGCLDRAIKVFDDIPEKNVVSWTAMISGYIDVGRYREAVNMFSKLLEMGLRPDSFSL VRVLAACAHLGDLNSGEWIDRSITQFGLSRDVFVATSVVDMYAKCGNMEKARLAFDGI PEKDIVTWSTMIQGYASNGLPKEALDLFFQMQKEKLAPDCYVMVGVLSACARLGALEL GDWASKLMDRAEFLSNPVLGTALIDMFAKCGSIAQAFEIFKRMKEKDLVVWNAAISGL AMNGHVKAAFGLFSQMEKSGVLPNGNTFIGLLCCCTHVGLVDDGHRYFDSMSRVFSLT PTIEHYGCMVDLLGRAGLLDEAHQLIKNMPMEANSIVWGALLGGCRLHKDTQLVEHVL KKLIELEPWNSGNYVLLSNIYSASHKWDDAAKIRSIMNERGIQKVPGYSWIEVNGFVH EFLVGDKSHPLSEMIYTKLGELAKELKAAGYVPTTEYVLFDIEEEEKEHFLGCHSEKL AIAFGLISTAPTDVIRVVKNLRVCGDCHEVIKLFSRVTGREIIVRDNNRFHHFIGGSC SCGDYW" CDS 11101223..11103289 /locus_tag="TCM_043921" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG038026t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /protein_id="EOY19147.1" /db_xref="Phytozome:POPTR_0016s13660.1" /db_xref="TAIR:AT3G08820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR82" /translation="MLSTLNSATSSCSKVTEITKRILGGFTSVRHLKQVHAALFRLGL HQHNYLLNIILKATFHFGQTNYACLIFNQTKQPNIYLWNTMIQGLVSGDCFLEAAQFY ASMRSQGFLPNSFTFPFVLKAYARLLDLQLGIRIHALVVKLGFDCDIFVKTGLLCLYA KCGCLDRAIKVFDDIPEKNVVSWTAMISGYIDVGRYREAVNMFSKLLEMGLRPDSFSL VRVLAACAHLGDLNSGEWIDRSITQFGLSRDVFVATSVVDMYAKCGNMEKARLAFDGI PEKDIVTWSTMIQGYASNGLPKEALDLFFQMQKEKLAPDCYVMVGVLSACARLGALEL GDWASKLMDRAEFLSNPVLGTALIDMFAKCGSIAQAFEIFKRMKEKDLVVWNAAISGL AMNGHVKAAFGLFSQMEKSGVLPNGNTFIGLLCCCTHVGLVDDGHRYFDSMSRVFSLT PTIEHYGCMVDLLGRAGLLDEAHQLIKNMPMEANSIVWGALLGGCRLHKDTQLVEHVL KKLIELEPWNSGNYVLLSNIYSASHKWDDAAKIRSIMNERGIQKVPGYSWIEVNGFVH EFLVGDKSHPLSEMIYTKLGELAKELKAAGYVPTTEYVLFDIEEEEKEHFLGCHSEKL AIAFGLISTAPTDVIRVVKNLRVCGDCHEVIKLFSRVTGREIIVRDNNRFHHFIGGSC SCGDYW" mRNA join(11101655..11103312,11103497..11103770, 11104871..11105367,11105743..11105986) /locus_tag="TCM_043921" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026249t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13660.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4033t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc497t2" mRNA join(11101655..11103312,11103587..11103770, 11104384..11104552) /locus_tag="TCM_043921" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026249t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13660.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4033t1; alternateUTRof:Thecc1EG043921t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc497t2" CDS 11101778..11103289 /locus_tag="TCM_043921" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG026249t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 3" /protein_id="EOY19148.1" /db_xref="Phytozome:POPTR_0016s13660.1" /db_xref="TAIR:AT3G08820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD88" /translation="MISGYIDVGRYREAVNMFSKLLEMGLRPDSFSLVRVLAACAHLG DLNSGEWIDRSITQFGLSRDVFVATSVVDMYAKCGNMEKARLAFDGIPEKDIVTWSTM IQGYASNGLPKEALDLFFQMQKEKLAPDCYVMVGVLSACARLGALELGDWASKLMDRA EFLSNPVLGTALIDMFAKCGSIAQAFEIFKRMKEKDLVVWNAAISGLAMNGHVKAAFG LFSQMEKSGVLPNGNTFIGLLCCCTHVGLVDDGHRYFDSMSRVFSLTPTIEHYGCMVD LLGRAGLLDEAHQLIKNMPMEANSIVWGALLGGCRLHKDTQLVEHVLKKLIELEPWNS GNYVLLSNIYSASHKWDDAAKIRSIMNERGIQKVPGYSWIEVNGFVHEFLVGDKSHPL SEMIYTKLGELAKELKAAGYVPTTEYVLFDIEEEEKEHFLGCHSEKLAIAFGLISTAP TDVIRVVKNLRVCGDCHEVIKLFSRVTGREIIVRDNNRFHHFIGGSCSCGDYW" CDS 11101778..11103289 /locus_tag="TCM_043921" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG026249t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 3" /protein_id="EOY19149.1" /db_xref="Phytozome:POPTR_0016s13660.1" /db_xref="TAIR:AT3G08820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD88" /translation="MISGYIDVGRYREAVNMFSKLLEMGLRPDSFSLVRVLAACAHLG DLNSGEWIDRSITQFGLSRDVFVATSVVDMYAKCGNMEKARLAFDGIPEKDIVTWSTM IQGYASNGLPKEALDLFFQMQKEKLAPDCYVMVGVLSACARLGALELGDWASKLMDRA EFLSNPVLGTALIDMFAKCGSIAQAFEIFKRMKEKDLVVWNAAISGLAMNGHVKAAFG LFSQMEKSGVLPNGNTFIGLLCCCTHVGLVDDGHRYFDSMSRVFSLTPTIEHYGCMVD LLGRAGLLDEAHQLIKNMPMEANSIVWGALLGGCRLHKDTQLVEHVLKKLIELEPWNS GNYVLLSNIYSASHKWDDAAKIRSIMNERGIQKVPGYSWIEVNGFVHEFLVGDKSHPL SEMIYTKLGELAKELKAAGYVPTTEYVLFDIEEEEKEHFLGCHSEKLAIAFGLISTAP TDVIRVVKNLRVCGDCHEVIKLFSRVTGREIIVRDNNRFHHFIGGSCSCGDYW" mobile_element complement(11108986..11109418) /note="source:CACAO_M_E4114_F49_scaffold_2 1409 1841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11109289..11117293 /note="source:INTACT1820F_F94_scaffold_12-int 237 8049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11117482..11117890 /note="source:CACAO_Again_on_S_E25_scaffold_1 3310 3719" /mobile_element_type="transposon:TIR/hAT" mobile_element 11120634..11123966 /note="source:CACAO_M_E44868_F328_scaffold_6 1 4514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11123910..11123977) /note="source:CACAO_M_E5627_F4_scaffold_2 2176 2243" /mobile_element_type="retrotransposon:LTR/Copia" gene 11126849..11129776 /locus_tag="TCM_043923" /note="dbxref CacaoGD:Thecc1EG043923" mRNA 11126849..11129776 /locus_tag="TCM_043923" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G59930.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043926t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8281t5" CDS 11127250..11129277 /locus_tag="TCM_043923" /note="paralog of Thecc1EG043926t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY19150.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT5G22355.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MEKEKESERVEEIQHFSHPHSLAVFNDEEQSEKSKEAHCTACLE LLLGCPSFGCGECKFYLHKKCAEAPSKISGSPFHRKHPTLTLRLSSISCDLCKQTRKM FKYCCTSCSAALDIKCALLLHNMVEDFREFKYIGHEHPLTFFENLKDELKRVDCHWCQ KPVIDSVYVCLNCRFYLHKQCVRLPTQLYHPCHRKHLLYLQDDSLVCRLCQRDHWSLF YQCLPCKLDIDIECVRSRPGSIIEYNSDHEHSFTLLVRNDPFICDACGTEGNYFSRIC STCHIMIHEKCISLPRIIKITRHHHYIFHNYFFQKQDLESHGCGICLSEVKIEYGSYK CFKQDCNYVVHVNCALEMEMYDIIDQVNDEDEESIENLAVNSSITCVIEMNQEGEAAK VKHFSHDHDLTLGNKIKEDDDQRCDACMLSISTSFYYCSQCNFLLHKTCAELPRKKHH WFHRSLTTLNLVDIYKCDRCRRLCSGFVYKDDEEYAFCLRCVGTSHTLICQGHEHFLF FDFKFRGQCSGCGATCENGGYKCKDCSTFALDVACITLPQATRYKGDKHFLKLGFHEE HDDPEQYYCDICEEKRNPNYWFYHCTVCNNSAHPKCALGRYPYMKIKIGITFPYQHHR HYHPLISVKKSYGTCSYCHQLCQDVALECTVCTPNLTIHYDCWDRYSLRVC" mobile_element complement(11132153..11140023) /note="source:INTACT740_F9_scaffold_10-int 1 7871" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11141700..11142491 /locus_tag="TCM_043925" /note="dbxref CacaoGD:Thecc1EG043925" mRNA join(11141700..11142189,11142295..11142491) /locus_tag="TCM_043925" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc4173t2" CDS 11141804..11142184 /locus_tag="TCM_043925" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19151.1" /translation="MVLTSFHSHPFKAWLSPFGLFSFSIFFLSFFPSWILRPLSSFSF SNLLFAFFFFLDFPLSIFSFFFFFSILFLSFFSSMAFLLSSELIFFLFSFLLAHFSWF PLVFDLCSSYFLSFDPFFLVFFGV" gene 11145571..11149733 /locus_tag="TCM_043926" /note="dbxref CacaoGD:Thecc1EG043926" mRNA join(11145571..11147693,11149641..11149733) /locus_tag="TCM_043926" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G59930.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043923t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9269t11" CDS 11145616..11147637 /locus_tag="TCM_043926" /note="paralog of Thecc1EG043923t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY19152.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT5G59930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MENQSERIEKIQHFGHPHSLVFYDEKQGDQSIEACCSACLESLL GCPSISCGDCKFYLHKKCAEAPSEISHSPFHRKHPTLTLKLSSSLCDMCKEKRLMFYY CCTSCLTTLDIKCALRLHNMDENFHELRYIGHEHPLTFIENPKDELKRAYCHWCQKPM VDSVYVCFNCNFYLHKKCAQFPPQLHHPSDRKHLLYLEDDRLVCSLCQRQHWSLFYRC LPCNFDIDIECVRSRSRSIFECEKHSFTQLLRHDPFICDACGTEGNYVSYICSTCHIM IHEKCISLPRVIKTTRHHHNIIHNYFFQKKDLGKRDCGICLSEVKIEYGNYKCLKQDC DYVSHVNCAREMGMYYIIDQVNDEDEESSEKLATNSSITCVIEMNQHEEATKIKHLRH DHVLTLGNKIKEDDDKHCDACMLSISTPFYYCSQCDFLLHKTCAELPRKKHHWFHQSL TTLDSGVFFKCAQCNRFCSGFVYKSDKESRSKFCLRCARISHTLICQGHEHFLFFDFK FKGQCSACGATCKNGVYRCKDCSTFALDFACITLPQAIRCKCDKHFLKLTFHDDNDDP EEYYCDICEEKREPNHWFYHCTVCDNSAHPKCVLGKYPFMKIKIGVTFPDDYHPHDHP LIFVKKSYDTCSICGHPCQDVALECKLCTPNYTFHCNCYLGYLSFLGLL" mobile_element 11153089..11154650 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5812 7375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11157533..11159156) /note="source:INTACT1327F_F381_scaffold_8-int 6068 7694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11161802..11163579) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18937 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11163965..11164586) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17896 18519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11167858..11167906) /note="source:INTACT261_F189_scaffold_2-int 12734 12782" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11169512..11169600) /note="source:INTACT261_F189_scaffold_2-int 12519 12599" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11171825..11172259) /note="source:CACAO_M_S_E90022_F9_scaffold_8 14048 14494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11172263..11182358) /note="source:CACAO_M_E84207_F12_scaffold_10 1 10096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11182431..11184108 /note="source:CACAO_M_S_E90022_F9_scaffold_8 12666 14337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11184109..11186468) /note="source:INTACT694_F17_scaffold_5-int 3309 5658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11186465..11187245 /note="source:INTACT47_F12_scaffold_3-int 6690 8628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11187246..11188397 /note="source:CACAO_M_E13604_F90_scaffold_3 5007 6158" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11188579..11190983 /note="source:CACAO_M_E57391_F87_scaffold_9 1 2399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11189712..11191191) /note="source:CACAO_M_E43916_F9_scaffold_5 2320 3802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11191267..11192103 /note="source:INTACT47_F12_scaffold_3-int 5272 6129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11191831..11193556) /note="source:CACAO_M_E48940_F279_scaffold_6 3781 5516" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11193721..11196514 /note="source:INTACT47_F12_scaffold_3-int 6692 9486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11196510..11198692) /note="source:CACAO_M_E33018_F264_scaffold_4 1150 3379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11198692..11199396 /note="source:CACAO_M_E58324_F9_scaffold_9 7668 8373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11199397..11199732) /note="source:CACAO_M_E84202_F15_scaffold_10 2057 2392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11200435..11202490) /note="source:CACAO_M_E84202_F15_scaffold_10 1 2056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11202491..11202640 /note="source:CACAO_M_E58324_F9_scaffold_9 8388 8537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11202625..11203336 /note="source:CACAO_M_E1841_F5_scaffold_1 3933 4672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11203330..11204046 /note="source:INTACT296_F13_scaffold_9-int 13740 14445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11204047..11204215) /note="source:CACAO_M_E33018_F264_scaffold_4 964 1154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11206587..11207339 /note="source:CACAO_M_E53388_F15_scaffold_8 3277 6374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11207669..11208652) /note="source:CACAO_M_E33018_F264_scaffold_4 4180 5152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11208647..11210586 /note="source:CACAO_M_E50108_F4_scaffold_7 1692 3649" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11210891..11212207 /note="source:INTACT10_F4_scaffold_6-int 3647 4965" /mobile_element_type="retrotransposon:LTR/Copia" gene 11214109..11223603 /locus_tag="TCM_043932" /note="dbxref CacaoGD:Thecc1EG043932" mRNA join(11214109..11214193,11215845..11216117, 11220610..11223603) /locus_tag="TCM_043932" /product="Receptor protein kinase 4" /inference="alignment:exonerate- protein:2:ricco:30179.m000566.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022285t1" /inference="similar to AA sequence:ricco:29910.m000961" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage" mobile_element complement(11216020..11217554) /note="source:CACAO_M_E84194_F17_scaffold_10 1 1535" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 11220651..11223047 /locus_tag="TCM_043932" /note="dbxref ricco:29910.m000961; paralog of Thecc1EG022285t1" /codon_start=1 /product="Receptor protein kinase 4" /protein_id="EOY19153.1" /db_xref="TAIR:AT1G34300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C187" /translation="MAKCFPFLLLILLFFTSLQFTSSAFPVLRQGSSLSVENPDDVLV SPSGIFSAGFYPVGHNAYCFSIWFSKPCHDGSHTIVWMANRDTPVNGRRSKLSILKTG NIILTDAGEFIIWTSNNTDSGSWSQLNLLDSGNLVLQTPANVTLWQSFGSPTDTLLPE QPLTRYKKLVSAQSQSNHSSGYYKLIYDYNNVLRLVLDGPETSSIYWPDSTILDYQQG RTRYNDSKIAVFDSAGYFSSSDKVEFRSNDFGRGPWRRLTLDFDGNLRLYTLEDQKGV WSVTWQAMSNSCRIHGACGPNSICSYDPSSGPKCSCLPGFKMKNQADWKDGCEPEFDL SCSKHDVNFVKLRHVNFFGYHYDIYRNYTLEACAKACLDSCCIAFQYRYFQNDGAYRC YPKWELRNGYQYSSYNGTLYLKLPKSFTYDEPVEEFKLNCSSNQTKQLERVYHKKTGN GLLKILIWCASVIGLIEMICIFLVFRFLYKTQRSSDAATCGYLVVASGFKKFTYDELR KATRCFSEEIGRGGVGVVYKGVLSDQRVAAIKRLNIEANQGEEEFLAEISTIGRLNHM NLIEMWGHCAEGKHRLLVYEYMENGSLAKNLMSDSLDWEKRFQIAVGTAKGLAYLHEE CLEWVLHCDVKPQNILLDSNYHPKVADFALSKLLNRNSLKSSSFSKVRGTRGYMAPEW VYNQPITSKVDVYSYGIVLLEMLTGRNPAIGVPDFKTSGEVWHQKLQEWVKGKKNGTA ATSSWVDELIDPAIGYDYDRNKLENLLEVAIKCTETNRHARPSMSQVVQMLLGDKIDP " gene 11223860..11229390 /locus_tag="TCM_043933" /note="dbxref CacaoGD:Thecc1EG043933" mRNA join(11223860..11224196,11224280..11224441, 11226318..11226493,11227177..11227280,11227408..11227519, 11228012..11228041,11228872..11229044) /locus_tag="TCM_043933" /product="NFU domain protein 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011272001" /inference="similar to AA sequence:Phytozome:POPTR_0010s24390.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9708t2; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9708t4; inference alignment:Newbler:10:TSA:cgbaL_g12477t00001" mRNA join(11223860..11224196,11224280..11224441, 11226318..11226493,11227177..11227280,11227408..11227519, 11229022..11229033) /locus_tag="TCM_043933" /product="NFU domain protein 4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011272001" /inference="similar to AA sequence:Phytozome:POPTR_0010s24390.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc133t4; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9708t4; inference alignment:Newbler:10:TSA:cgbaL_g12477t00001" mRNA join(11223954..11224196,11224280..11224441, 11226318..11226493,11227177..11227280,11227408..11227519, 11229036..11229390) /locus_tag="TCM_043933" /product="NFU domain protein 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011272001" /inference="similar to AA sequence:ricco:29930.m000619" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12477t00001; inference alignment:Newbler:10:TSA:cgbaL_g12477t00001" CDS join(11223977..11224196,11224280..11224441, 11226318..11226493,11227177..11227280,11227408..11227519, 11229036..11229104) /locus_tag="TCM_043933" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29930.m000619" /codon_start=1 /product="NFU domain protein 4 isoform 1" /protein_id="EOY19154.1" /db_xref="TAIR:AT3G20970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIG6" /translation="MRGVGRLVRRSLDHCRTCGGSLFPSHLVSRRLLFSSSRTSSWLV IGSQSSILSSNSETLPSSSLLPRKGTPFTGQRRNMFIQTQSTPNPSSLMFYPGKAVME VGSADFPNARSAMNSPLAKALYGIDGIARVFFGSDFVTVTKSDDASWDLLKPEIFAAI MDFYSSGQPLFLDSKTAAAMDTAIHEDDSETVAMIKELLETRIRPAVQDDGGDVEYRG FDLDTGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDAEDEDTTLA GQME" CDS join(11223977..11224196,11224280..11224441, 11226318..11226493,11227177..11227280,11227408..11227519, 11229022..11229030) /locus_tag="TCM_043933" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="NFU domain protein 4 isoform 3" /protein_id="EOY19156.1" /db_xref="Phytozome:POPTR_0010s24390.1" /db_xref="TAIR:AT3G20970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIG6" /translation="MRGVGRLVRRSLDHCRTCGGSLFPSHLVSRRLLFSSSRTSSWLV IGSQSSILSSNSETLPSSSLLPRKGTPFTGQRRNMFIQTQSTPNPSSLMFYPGKAVME VGSADFPNARSAMNSPLAKALYGIDGIARVFFGSDFVTVTKSDDASWDLLKPEIFAAI MDFYSSGQPLFLDSKTAAAMDTAIHEDDSETVAMIKELLETRIRPAVQDDGGDVEYRG FDLDTGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPELF" CDS join(11223977..11224196,11224280..11224441, 11226318..11226493,11227177..11227280,11227408..11227519, 11228012..11228041,11228872..11228889) /locus_tag="TCM_043933" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NFU domain protein 4 isoform 2" /protein_id="EOY19155.1" /db_xref="Phytozome:POPTR_0010s24390.1" /db_xref="TAIR:AT3G20970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIG6" /translation="MRGVGRLVRRSLDHCRTCGGSLFPSHLVSRRLLFSSSRTSSWLV IGSQSSILSSNSETLPSSSLLPRKGTPFTGQRRNMFIQTQSTPNPSSLMFYPGKAVME VGSADFPNARSAMNSPLAKALYGIDGIARVFFGSDFVTVTKSDDASWDLLKPEIFAAI MDFYSSGQPLFLDSKTAAAMDTAIHEDDSETVAMIKELLETRIRPAVQDDGGDVEYRG FDLDTGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPESVKVVYKAQLYMLLL" gene 11229497..11237250 /locus_tag="TCM_043934" /note="dbxref CacaoGD:Thecc1EG043934" mRNA join(11229497..11229754,11230595..11230961, 11232403..11232514,11233082..11233194,11233263..11233385, 11233499..11233671,11233865..11233940,11234994..11235080, 11235349..11235429,11235515..11235547,11235942..11235995, 11236131..11236172,11236367..11236445,11236525..11236595, 11236694..11237250) /locus_tag="TCM_043934" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29930.m000618" /inference="similar to AA sequence:ricco:29930.m000618" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc488t10_C2" CDS join(11229735..11229754,11230595..11230961, 11232403..11232514,11233082..11233194,11233263..11233385, 11233499..11233671,11233865..11233940,11234994..11235080, 11235349..11235429,11235515..11235547,11235942..11235995, 11236131..11236172,11236367..11236445,11236525..11236595, 11236694..11236792) /locus_tag="TCM_043934" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29930.m000618" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY19157.1" /db_xref="TAIR:AT2G16980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVY5" /translation="MFRDVIMPPTPKHTTNPSQHVDVYAHTHSPPFFSLLCTLTYTPN IKIKLKLIQFLLLHFSRSVMGVRMSWNCGGFTELRPLLHLLLPLCVHWIAEEMTVSVL VDVVTAALCPSQSTCSEAIYISGIQQTVVGVLKMLVLPLLGQLADEYGRKPLLLLTVS TTIVPFALLAWNQSREFVYIYYVLRTISYIISQGSIFCIAVAYAADVVSVRNRAAVFS LITGLFSASHVLGNVLARFLPEKYIFLVSIVLLIFCPVYMQFFLVETVEIDTTREQDS GCLTKSMKVLNKRYKSMKDAAGIVISSPTLRGISFVSFFYELGTSGITSILLYYLKAA FGFDKDQFSEILMMVGIGSIASQILVLPLINPLVGEKVILCIALLASIAYALFNGLAW APWVPYLGASFGVIYVLVKPSTYAIISKASSVTDQGTVQGFIAGVQAMASLLSPLAMS PLTSWFLSSNAPFNCKGFSIIVASICLVISLCFACLLQPGENSIQETEEDMEASLLSN S" mRNA join(11230654..11230961,11232403..11232514, 11233082..11233194,11233263..11233385,11233499..11233671, 11233865..11233940,11234994..11235080,11235349..11235429, 11235515..11235547,11235942..11235995,11236131..11236172, 11236364..11236445,11236525..11236595,11236694..11237114) /locus_tag="TCM_043934" /product="Major facilitator superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29930.m000618" /inference="similar to AA sequence:ricco:29930.m000618" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4195t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc488t10_C2" CDS join(11230764..11230961,11232403..11232514, 11233082..11233194,11233263..11233385,11233499..11233671, 11233865..11233940,11234994..11235080,11235349..11235429, 11235515..11235547,11235942..11235995,11236131..11236172, 11236364..11236445,11236525..11236595,11236694..11236792) /locus_tag="TCM_043934" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29930.m000618" /codon_start=1 /product="Major facilitator superfamily protein isoform 2" /protein_id="EOY19158.1" /db_xref="TAIR:AT2G16980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVY5" /translation="MGVRMSWNCGGFTELRPLLHLLLPLCVHWIAEEMTVSVLVDVVT AALCPSQSTCSEAIYISGIQQTVVGVLKMLVLPLLGQLADEYGRKPLLLLTVSTTIVP FALLAWNQSREFVYIYYVLRTISYIISQGSIFCIAVAYAADVVSVRNRAAVFSLITGL FSASHVLGNVLARFLPEKYIFLVSIVLLIFCPVYMQFFLVETVEIDTTREQDSGCLTK SMKVLNKRYKSMKDAAGIVISSPTLRGISFVSFFYELGTSGITSILLYYLKAAFGFDK DQFSEILMMVGIGSIASQILVLPLINPLVGEKVILCIALLASIAYALFNGLAWAPWVP YLGASFGVIYVLVKPSTYAIISKASSVTDQQGTVQGFIAGVQAMASLLSPLAMSPLTS WFLSSNAPFNCKGFSIIVASICLVISLCFACLLQPGENSIQETEEDMEASLLSNS" mRNA join(11231715..11231738,11232403..11232514, 11233082..11233194,11233263..11233385,11233499..11233671, 11233865..11233940,11234994..11235080,11235349..11235429, 11235515..11235547,11235942..11235995,11236131..11236172, 11236367..11236445,11236525..11236595,11236694..11236826) /locus_tag="TCM_043934" /product="Major facilitator superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29930.m000618" /inference="similar to AA sequence:ricco:29930.m000618" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc488t2_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc488t10_C2" mRNA join(11231913..11232514,11233082..11233194, 11233263..11233385,11233499..11233671,11233865..11233940, 11234994..11235080,11235349..11235429,11235515..11235547, 11235942..11235995,11236131..11236172,11236367..11236445, 11236525..11236595,11236694..11236826) /locus_tag="TCM_043934" /product="Major facilitator superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29930.m000618" /inference="similar to AA sequence:ricco:29930.m000618" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc488t7_C2; alternateUTRof:Thecc1EG043934t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc488t10_C2" CDS join(11232421..11232514,11233082..11233194, 11233263..11233385,11233499..11233671,11233865..11233940, 11234994..11235080,11235349..11235429,11235515..11235547, 11235942..11235995,11236131..11236172,11236367..11236445, 11236525..11236595,11236694..11236792) /locus_tag="TCM_043934" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29930.m000618" /codon_start=1 /product="Major facilitator superfamily protein isoform 3" /protein_id="EOY19159.1" /db_xref="TAIR:AT2G16980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVY5" /translation="MLVLPLLGQLADEYGRKPLLLLTVSTTIVPFALLAWNQSREFVY IYYVLRTISYIISQGSIFCIAVAYAADVVSVRNRAAVFSLITGLFSASHVLGNVLARF LPEKYIFLVSIVLLIFCPVYMQFFLVETVEIDTTREQDSGCLTKSMKVLNKRYKSMKD AAGIVISSPTLRGISFVSFFYELGTSGITSILLYYLKAAFGFDKDQFSEILMMVGIGS IASQILVLPLINPLVGEKVILCIALLASIAYALFNGLAWAPWVPYLGASFGVIYVLVK PSTYAIISKASSVTDQGTVQGFIAGVQAMASLLSPLAMSPLTSWFLSSNAPFNCKGFS IIVASICLVISLCFACLLQPGENSIQETEEDMEASLLSNS" CDS join(11232421..11232514,11233082..11233194, 11233263..11233385,11233499..11233671,11233865..11233940, 11234994..11235080,11235349..11235429,11235515..11235547, 11235942..11235995,11236131..11236172,11236367..11236445, 11236525..11236595,11236694..11236792) /locus_tag="TCM_043934" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29930.m000618" /codon_start=1 /product="Major facilitator superfamily protein isoform 3" /protein_id="EOY19160.1" /db_xref="TAIR:AT2G16980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVY5" /translation="MLVLPLLGQLADEYGRKPLLLLTVSTTIVPFALLAWNQSREFVY IYYVLRTISYIISQGSIFCIAVAYAADVVSVRNRAAVFSLITGLFSASHVLGNVLARF LPEKYIFLVSIVLLIFCPVYMQFFLVETVEIDTTREQDSGCLTKSMKVLNKRYKSMKD AAGIVISSPTLRGISFVSFFYELGTSGITSILLYYLKAAFGFDKDQFSEILMMVGIGS IASQILVLPLINPLVGEKVILCIALLASIAYALFNGLAWAPWVPYLGASFGVIYVLVK PSTYAIISKASSVTDQGTVQGFIAGVQAMASLLSPLAMSPLTSWFLSSNAPFNCKGFS IIVASICLVISLCFACLLQPGENSIQETEEDMEASLLSNS" gene complement(11237254..11254405) /locus_tag="TCM_043935" /note="dbxref CacaoGD:Thecc1EG043935" mRNA complement(join(11237254..11238503,11239609..11239745, 11240334..11240531,11254232..11254405)) /locus_tag="TCM_043935" /product="Polynucleotidyl transferase, putative" /inference="alignment:exonerate-protein:2:frave:gene17165" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019529t1" /inference="similar to AA sequence:frave:gene26026" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc1654t1" CDS complement(join(11237535..11238503,11239609..11239745, 11240334..11240487)) /locus_tag="TCM_043935" /note="dbxref frave:gene26026; paralog of Thecc1EG019529t1" /codon_start=1 /product="Polynucleotidyl transferase, putative" /protein_id="EOY19161.1" /db_xref="TAIR:AT5G42905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P0C2F6" /translation="MCGVEVHMTVMVKCGVGVYMMIFAMSGVEVHMTILAMCGVRVHM SWGDVGSWDLSCPDSRCSEIRVSPQRETLYLVSRSAAILTLNFIVHHGSFNIKLTSSS KVRLLIWRILHEALPTSEWLLKRHLRSTAFYFRCEAPVETLVHALRDCGKSKLLWLQL RPNIHSSDFFSEELKPWVLKNLACKDPVEGIPWAIIFIHAIWLLWFWRNMNLFDKSFI WPANATKQVWTKAKEAWDTLGKENHRLKQEVLIAWEKPKNGYVKLNVDGSAKGQPGLA ASGGVIRDEYGNWIAGFCQKIGITFSLTAEPWGIYQGLTLCWNRGLRKFCVEIDSMLA LQKIYSQSSMLDPNAQLLRRIKELLQQSWDVTISHVHREADQCTDWMTTHIENLKLGL HIFEYPPHDIVYYLFTDSLGISWSRMM" mobile_element complement(11240326..11240541) /note="source:CACAO_M_S_E4534_F4_scaffold_1 3706 3969" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11240637..11241490) /note="source:CACAO_M_S_E64608_F12_scaffold_5 4709 5572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11241964..11242009 /note="source:scaffold_3_CACTA_0382 1860 1905" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11242110..11242559) /note="source:scaffold_3_CACTA_0382 10452 10863" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11242524..11242589 /note="source:CACAO_M_E22186_F143_scaffold_3 9939 10004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11242531..11242720) /note="source:INTACT296_F13_scaffold_9-int 13028 13219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11242718..11243715) /note="source:CACAO_M_S_E64608_F12_scaffold_5 2950 3908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11243740..11243973 /note="source:CACAO_M_E1841_F5_scaffold_1 22117 22335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11250484..11250786) /note="source:INTACT598_F89_scaffold_2-int 2703 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11250779..11251402) /note="source:INTACT169_F14_scaffold_2-int 7978 8602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11251405..11254202) /note="source:CACAO_M_E84192_F244_scaffold_10 1 2798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11254203..11254526) /note="source:INTACT169_F14_scaffold_2-int 7658 7978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11254493..11254558) /note="source:scaffold_1_CACTA_0011 7472 7537" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11254520..11254604) /note="source:CACAO_M_E33213_F12_scaffold_4 9229 9309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11254559..11254595 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3275 3318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11259948..11262993) /note="source:CACAO_M_E84189_F277_scaffold_10 1 3002" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11261959..11263682 /locus_tag="TCM_043936" /note="dbxref CacaoGD:Thecc1EG043936" mRNA join(11261959..11262450,11262873..11263682) /locus_tag="TCM_043936" /product="T6D22.19, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044698t1" /inference="similar to AA sequence:Phytozome:Glyma04g34950.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage" CDS 11262930..11263463 /locus_tag="TCM_043936" /note="paralog of Thecc1EG044698t1" /codon_start=1 /product="T6D22.19, putative" /protein_id="EOY19162.1" /db_xref="Phytozome:Glyma04g34950.1" /translation="MNVSRDIAAVVTGSRRVPGCDMLVEAIIKHELPYAFVEYDKIRA WAQYVNPNVVMHCRNTTISDVRRIHLREKEKLKQVMVKVPNRICLTSDVWITSTFEDY ICLTAHFVNENWKLCSKLLNFCRMLPPHIGVELAATVFDCLKEWGIDKKVFSLSLDNA SATDNMKAALKATFICK" mobile_element 11263635..11263651 /note="source:INTACT287_F193_scaffold_2-int 9095 9117" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11263652..11272381) /note="source:INTACT13_F5_scaffold_10-int 1 8730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11274475..11275061 /note="source:CACAO_M_S_E89272_F5_scaffold_8 6734 7288" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11275942..11275953 /note="source:CACAO_M_E42589_F12_scaffold_5 11960 11968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11275954..11288712) /note="source:CACAO_M_E84179_F14_scaffold_10 1 12759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11295164..11306384) /note="source:scaffold_10_CACTA_0137 1 11221" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11309622..11319809) /note="source:INTACT601_F12_scaffold_10-int 1 10188" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11322146..11325107 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3504 6469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11325209..11326165 /note="source:CACAO_M_E23144_F272_scaffold_4 8147 9103" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11327116..11329934) /note="source:CACAO_M_E69737_F323_scaffold_9 5636 8443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11330041..11330420) /note="source:INTACT646F_F95_scaffold_5-int 9340 9719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11330722..11331420 /note="source:CACAO_M_E49857_F85_scaffold_7 19002 19701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11332854..11333827 /note="source:CACAO_M_E59093_F12_scaffold_9 7647 8614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11334304..11334533) /note="source:CACAO_M_E69737_F323_scaffold_9 1 229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11334534..11334569 /note="source:CACAO_M_S_E99214_F90_scaffold_9 9709 9968" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11337245..11337320 /note="source:CACAO_Mutator_E206_scaffold_1 7535 7608" /mobile_element_type="transposon:TIR/Mutator" mobile_element 11337341..11339114 /note="source:CACAO_M_E52278_F17_scaffold_7 602 2407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11339115..11342210) /note="source:INTACT88_F12_scaffold_4-int 1967 7495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11341908..11342252 /note="source:CACAO_M_E69551_F193_scaffold_9 6098 6444" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11342211..11342667 /note="source:CACAO_M_E52278_F17_scaffold_7 2403 2866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11342705..11344017 /note="source:CACAO_M_E84109_F33_scaffold_10 1 1313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11344018..11346952) /note="source:CACAO_M_E84167_F33_scaffold_10 1 2935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11346953..11356624) /note="source:INTACT214_F33_scaffold_8-int 1 12582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11356659..11357663 /note="source:INTACT129_F13_scaffold_7-int 1 1004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11358279..11359824) /note="source:CACAO_M_E52278_F17_scaffold_7 1 1536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11360124..11360581 /note="source:CACAO_M_E52278_F17_scaffold_7 2953 3409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11360581..11363765 /note="source:INTACT298_F14_scaffold_10-int 3099 6281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11363761..11367134) /note="source:INTACT528_F17_scaffold_6-int 491 3914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11367129..11367653) /note="source:CACAO_M_S_E109853_F60_scaffold_9 6706 7229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11369874..11370392 /note="source:CACAO_M_E71671_F17_scaffold_10 1030 1542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11373029..11376018 /note="source:CACAO_M_S_E64951_F7_scaffold_5 1 2992" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11376551..11382778 /locus_tag="TCM_043950" /note="dbxref CacaoGD:Thecc1EG043950" mRNA join(11376551..11376964,11377069..11377154, 11378115..11378194,11378831..11378886,11379524..11379572, 11381973..11382095,11382226..11382778) /locus_tag="TCM_043950" /product="SMAD/FHA domain-containing-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036516001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019051t1" /inference="similar to AA sequence:frave:gene04197" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10326t00001" CDS join(11376666..11376964,11377069..11377154, 11378115..11378194,11378831..11378886,11379524..11379572, 11381973..11382095,11382226..11382492) /locus_tag="TCM_043950" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene04197; paralog of Thecc1EG019051t1" /codon_start=1 /product="SMAD/FHA domain-containing-like protein isoform 1" /protein_id="EOY19163.1" /db_xref="TAIR:AT5G38840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AW23" /translation="MTTTTGPQPRRNPNLLTEPELITQEESEPTTGKTSRDPPQNPPD QEMESTCDSEPNSVEKPSSSKHSSVPYAIPQWSEPPSHHFFLEVLEEGCVIDQLKVYE KGAYMFGSVDLCDVVLEHPTISRFHAVLQFRSSGQAYIYDLGSKHGTFINKSQVTRRT YVDVHVGDVIQFGRSSHLYIFQGPSELMPLKRNQNLGPAMADKELEVGDELAESLNDL STSVSTMVKSELQGTNNILELLEKMNLKVAEEYKGFGDVASGLRVFVEQLKNKSGNFD EYVQQIDTIEQQVTEFEAVISVLDRYVSLLESKVQSVYQHPPP" mRNA join(<11376717..11376964,11377069..11377154, 11378115..11378194,11378831..11378886,11379524..11379572, 11382226..>11382406) /locus_tag="TCM_043950" /product="SMAD/FHA domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036516001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019051t1" /inference="similar to AA sequence:frave:gene04197" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc457t5_C1; inference alignment:Newbler:10:TSA:cgbaP2_g10326t00001" CDS join(<11376717..11376964,11377069..11377154, 11378115..11378194,11378831..11378886,11379524..11379572, 11382226..>11382405) /locus_tag="TCM_043950" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene04197; paralog of Thecc1EG019051t1" /codon_start=1 /product="SMAD/FHA domain-containing protein, putative isoform 2" /protein_id="EOY19164.1" /db_xref="TAIR:AT5G38840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AW23" /translation="EPELITQEESEPTTGKTSRDPPQNPPDQEMESTCDSEPNSVEKP SSSKHSSVPYAIPQWSEPPSHHFFLEVLEEGCVIDQLKVYEKGAYMFGSVDLCDVVLE HPTISRFHAVLQFRSSGQAYIYDLGSKHGTFINKSQVTRRTYVDVHVGDVIQFGRSSH LYIFQGPSELMPLGTNNILELLEKMNLKVAEEYKGFGDVASGLRVFVEQLKNKSGNFD EYVQQIDTIEQQVTE" mobile_element 11385803..11387551 /note="source:CACAO_M_E42395_F3_scaffold_5 19125 20872" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11389910..11390888 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6119 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11391244..11391377 /note="source:CACAO_M_S_E4591_F5_scaffold_1 19784 19917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11392537..11392617 /note="source:INTACT298_F14_scaffold_10-int 148 235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11393162..11394493) /note="source:CACAO_M_S_E7818_F60_scaffold_2 19637 21002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11394498..11395709 /note="source:INTACT312_F195_scaffold_2-int 2077 3068" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11395615..11397175) /note="source:CACAO_M_E24592_F195_scaffold_4 19182 20687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11396240..11397575 /note="source:CACAO_M_S_E109853_F60_scaffold_9 6509 7865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11398305..11398737 /note="source:CACAO_M_S_E109853_F60_scaffold_9 6569 7025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11398992..11400289 /note="source:CACAO_M_S_E109853_F60_scaffold_9 7861 9167" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11400286..11400362 /note="source:CACAO_M_S_E109853_F60_scaffold_9 9427 9502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11400363..11403406) /note="source:CACAO_M_S_E144247_F201_scaffold_10 1 3044" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11403407..11405620 /note="source:CACAO_M_S_E109853_F60_scaffold_9 9504 11711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11405780..11406391) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6969 7598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11406392..11409162 /note="source:CACAO_M_E24592_F195_scaffold_4 1 1457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11408073..11413248) /note="source:INTACT595_F266_scaffold_7-int 3503 8673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11413249..11415766 /note="source:INTACT41F_F338_scaffold_1-int 6917 9188" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11419388..11419626 /note="source:INTACT135F_F90_scaffold_2-int 13756 13998" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11419626..11420243) /note="source:INTACT595_F266_scaffold_7-int 1823 2438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11420240..11420392) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6826 6977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11420393..11421212) /note="source:scaffold_5_CACTA_0596 4244 5041" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11421256..11421316) /note="source:scaffold_5_CACTA_0596 13692 13754" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11422819..11423004) /note="source:scaffold_5_CACTA_0596 618 801" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11423005..11428673) /note="source:CACAO_M_E43672_F60_scaffold_5 7761 13403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11428670..11430103 /note="source:INTACT1327F_F381_scaffold_8-int 4379 5814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11430549..11433527) /note="source:CACAO_M_E180651_F143_scaffold_26 1 2984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11433988..11435572) /note="source:CACAO_M_S_E7818_F60_scaffold_2 18548 20236" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11438515..11439351) /note="source:CACAO_M_E84368_F4_scaffold_10 937 1798" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11445375..11448324) /note="source:CACAO_M_E3509_F7_scaffold_1 3 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11449580..11449906) /note="source:CACAO_M_E84368_F4_scaffold_10 12876 13211" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11449905..11450093) /note="source:CACAO_M_E84368_F4_scaffold_10 12189 12366" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11451798..11452351 /note="source:CACAO_M_S_E5285_F300_scaffold_1 2781 3333" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11455031..11459691) /note="source:CACAO_M_E84368_F4_scaffold_10 5105 9894" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11459632..11459765) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3577 3724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11463701..11473647) /note="source:INTACT363_F7_scaffold_9-int 1 9921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11474921..11476097) /note="source:CACAO_M_E33160_F143_scaffold_4 5595 6609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11475870..11476153 /note="source:scaffold_2_CACTA_0261 2676 2964" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11476074..11477383) /note="source:scaffold_5_CACTA_0596 5576 6923" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11478116..11481557 /note="source:CACAO_M_E14113_F106_scaffold_3 10680 14188" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11481546..11481562 /note="source:CACAO_M_S_E5285_F300_scaffold_1 13568 13582" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11482850..11482958) /note="source:CACAO_M_E2982_F85_scaffold_1 2194 2301" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11483059..11484466 /note="source:CACAO_M_E2953_F85_scaffold_1 7800 9206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11484454..11484968 /note="source:CACAO_M_E45167_F85_scaffold_6 9514 10002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11484969..11486015 /note="source:CACAO_M_E14113_F106_scaffold_3 14219 15265" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11486016..11486721 /note="source:INTACT1223F_F374_scaffold_6-int 9805 10505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11486717..11493680 /note="source:INTACT1223F_F374_scaffold_6-int 4453 11347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11493681..11494722 /note="source:scaffold_4_CACTA_0489 7509 8655" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11494723..11497487) /note="source:CACAO_M_E4900_F368_scaffold_2 2721 5482" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11499266..11499302) /note="source:INTACT409F_F47_scaffold_4-int 17694 17730" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11500761..11504718 /note="source:CACAO_LINE_E_240_scaffold_9 849 4801" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(11504719..11507653) /note="source:CACAO_M_E12604_F246_scaffold_3 1 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11508880..11509965) /note="source:CACAO_LINE_E_216_scaffold_8 1 1079" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(11509949..11510655) /note="source:CACAO_M_E44210_F112_scaffold_5 3975 4674" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11510603..11511100) /note="source:INTACT19F_F94_scaffold_1-int 2584 3028" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11511202..11512551 /note="source:CACAO_M_E49857_F85_scaffold_7 16365 17465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11512556..11512780 /note="source:INTACT409F_F47_scaffold_4-int 1748 1979" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11512787..11512837 /note="source:INTACT409F_F47_scaffold_4-int 7419 7467" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11516213..11516831 /note="source:CACAO_M_E23991_F4_scaffold_4 9260 9874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11517696..11517917) /note="source:CACAO_M_S_E119615_F3_scaffold_9 18789 19009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11517979..11519106) /note="source:CACAO_M_S_E119615_F3_scaffold_9 17665 18791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11519107..11519448) /note="source:CACAO_M_E49298_F73_scaffold_7 2407 2732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11519549..11521903) /note="source:CACAO_M_E14079_F73_scaffold_3 1 2357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11521904..11522229) /note="source:CACAO_M_S_E119615_F3_scaffold_9 17329 17655" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11524956..11529050 /locus_tag="TCM_043962" /note="dbxref CacaoGD:Thecc1EG043962" mRNA join(11524956..11525479,11525618..11525858, 11525954..11526051,11526137..11526202,11526956..11527045, 11527456..11527524,11527601..11527707,11527830..11528034, 11528700..11529050) /locus_tag="TCM_043962" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011252001" /inference="similar to AA sequence:Phytozome:POPTR_0008s02290.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10917t00001; inference alignment:Newbler:10:TSA:cgbaL_g10917t00001" mRNA join(11524956..11525479,11525618..11525858, 11525954..11526051,11526137..11526202,11526956..11527045, 11527456..11527524,11527601..11527707,11527830..11528110) /locus_tag="TCM_043962" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011252001" /inference="similar to AA sequence:Phytozome:POPTR_0008s02290.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01247t00001; alternateUTRof:Thecc1EG043962t1; inference alignment:Newbler:10:TSA:cgbaL_g10917t00001" CDS join(11525023..11525479,11525618..11525858, 11525954..11526051,11526137..11526202,11526956..11527045, 11527456..11527524,11527601..11527707,11527830..11527916) /locus_tag="TCM_043962" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY19165.1" /db_xref="Phytozome:POPTR_0008s02290.1" /db_xref="TAIR:AT3G20930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL01" /translation="MEALCPSLTTIHFASKFPLNSPKPFPQIVSLDANRFPVWVRKNE SKNHSNLSLTSSVSCICLSTTGIATAASASFVSSSSSSTTDNNYWMVLMAKPPEAVSS KPQIIDYYVSTLERVLGTEKDAQMCIYDASCDTRFGFCCHIDEQASRELACLPEVLSV KPDPEYNSEKKDYTASNIEVTNIFNSGVASWQLFPAGNTKHWLVRMDKPGVEVVTKAQ MVDYYTQILTKVLGNEKDAQMCIYHVSWQSHFGFCCELDEECAQELAGVPGVLSVEVD RNFDSENKDFGGNNLQSSTNLPETSESSEMITTRTKKLFITGLSFYTSEKTLRAHFEG FGELVEVKIIMDKISKRSKGYAFVEYTTEKAASAALTEMNGKIINGWMIVVDVAKSKP QNFSRGRPRTTL" CDS join(11525023..11525479,11525618..11525858, 11525954..11526051,11526137..11526202,11526956..11527045, 11527456..11527524,11527601..11527707,11527830..11527916) /locus_tag="TCM_043962" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY19166.1" /db_xref="Phytozome:POPTR_0008s02290.1" /db_xref="TAIR:AT3G20930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL01" /translation="MEALCPSLTTIHFASKFPLNSPKPFPQIVSLDANRFPVWVRKNE SKNHSNLSLTSSVSCICLSTTGIATAASASFVSSSSSSTTDNNYWMVLMAKPPEAVSS KPQIIDYYVSTLERVLGTEKDAQMCIYDASCDTRFGFCCHIDEQASRELACLPEVLSV KPDPEYNSEKKDYTASNIEVTNIFNSGVASWQLFPAGNTKHWLVRMDKPGVEVVTKAQ MVDYYTQILTKVLGNEKDAQMCIYHVSWQSHFGFCCELDEECAQELAGVPGVLSVEVD RNFDSENKDFGGNNLQSSTNLPETSESSEMITTRTKKLFITGLSFYTSEKTLRAHFEG FGELVEVKIIMDKISKRSKGYAFVEYTTEKAASAALTEMNGKIINGWMIVVDVAKSKP QNFSRGRPRTTL" gene complement(11528167..11534315) /locus_tag="TCM_043963" /note="dbxref CacaoGD:Thecc1EG043963" mRNA complement(join(11528167..11528745,11529362..11529702, 11529798..11529872,11529970..11530038,11530950..11531148, 11531980..11532085,11533167..11534315)) /locus_tag="TCM_043963" /product="AAA-type ATPase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g30910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041448t1" /inference="similar to AA sequence:ricco:30055.m001537" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:PASA:2:TSA:puevd3b042416t1a3; inference alignment:Newbler:10:TSA:cgbaB_g01181t00002" mRNA complement(join(11528179..11528745,11529362..11529517, 11529604..11529702,11529798..11529872,11529970..11530038, 11530950..11531148,11531980..11532085,11533167..11533793)) /locus_tag="TCM_043963" /product="AAA-type ATPase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g30910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041448t1" /inference="similar to AA sequence:ricco:30055.m001537" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01181t00002" mRNA complement(join(11528578..11528745,11529362..11529517, 11529604..11529702,11529798..11529872,11529970..11530062, 11530950..11531148,11531980..11532085,11533167..11534212)) /locus_tag="TCM_043963" /product="AAA-type ATPase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g30910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041448t1" /inference="similar to AA sequence:ricco:30055.m001537" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01181t00001; inference alignment:Newbler:10:TSA:cgbaB_g01181t00002; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9169t17" CDS complement(join(11528620..11528745,11529362..11529517, 11529604..11529702,11529798..11529872,11529970..11530038, 11530950..11531148,11531980..11532085,11533167..11533632)) /locus_tag="TCM_043963" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30055.m001537; paralog of Thecc1EG041448t1" /codon_start=1 /product="AAA-type ATPase family protein isoform 1" /protein_id="EOY19167.1" /db_xref="TAIR:AT2G27600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL02" /translation="MYSNFKEHAIEYVKQAVREDDAGNYSKAIHLYMNALEYFKTHLK YEKNPKIKEAIMQKFNEYLRRAEEIRAILDNGGSLPNSNRDVGDATWPKTKDGEGKDK EDSEQAKLRAGLYSVIIKEKPDVKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRP WKAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARD NAPSIIFIDEVDSLCGQRGEGNESEASRRIKTELLVQMQGVGNDDNKVLVLAATNTPY ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARKTEGFSGSD ISVCVKDVLFEPVRKTRDAEFFMKTTNDMWVPCGRTQPGAIRTTILELDGKGLASKIL PPPITRADFDKVLARQKPTVSKADLEVHERFTKEFGEEG" CDS complement(join(11528620..11528745,11529362..11529517, 11529604..11529702,11529798..11529872,11529970..11530062, 11530950..11531148,11531980..11532085,11533167..11533632)) /locus_tag="TCM_043963" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30055.m001537; paralog of Thecc1EG041448t1" /codon_start=1 /product="AAA-type ATPase family protein isoform 2" /protein_id="EOY19168.1" /db_xref="TAIR:AT2G27600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL02" /translation="MYSNFKEHAIEYVKQAVREDDAGNYSKAIHLYMNALEYFKTHLK YEKNPKIKEAIMQKFNEYLRRAEEIRAILDNGGSLPNSNRDVGDATWPKTKDGEGKDK EDSEQAKLRAGLYSVIIKEKPDVKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRP WKAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARD NAPSIIFIDEVDSLCGQRGEGNESEASRRIKTELLVQMQGVLFYAFQGVGNDDNKVLV LAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARK TEGFSGSDISVCVKDVLFEPVRKTRDAEFFMKTTNDMWVPCGRTQPGAIRTTILELDG KGLASKILPPPITRADFDKVLARQKPTVSKADLEVHERFTKEFGEEG" CDS complement(join(11529586..11529702,11529798..11529872, 11529970..11530038,11530950..11531148,11531980..11532085, 11533167..11533632)) /locus_tag="TCM_043963" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30055.m001537; paralog of Thecc1EG041448t1" /codon_start=1 /product="AAA-type ATPase family protein isoform 3" /protein_id="EOY19169.1" /db_xref="TAIR:AT2G27600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL02" /translation="MYSNFKEHAIEYVKQAVREDDAGNYSKAIHLYMNALEYFKTHLK YEKNPKIKEAIMQKFNEYLRRAEEIRAILDNGGSLPNSNRDVGDATWPKTKDGEGKDK EDSEQAKLRAGLYSVIIKEKPDVKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRP WKAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARD NAPSIIFIDEVDSLCGQRGEGNESEASRRIKTELLVQMQGVGNDDNKVLVLAATNTPY ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARKTEGFSGSD ISVCVGAIC" mobile_element complement(11535966..11537656) /note="source:INTACT7_F3_scaffold_8-int 6310 8007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11539220..11541383) /note="source:CACAO_M_S_E15974_F3_scaffold_2 6008 8181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11541356..11541390) /note="source:CACAO_Again_on_E14_scaffold_1 4033 4064" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(11541391..11544154) /note="source:CACAO_M_E84136_F87_scaffold_10 1 2764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11544155..11547854 /note="source:CACAO_M_E12058_F3_scaffold_2 2149 5859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11547855..11550984) /note="source:CACAO_M_E84133_F115_scaffold_10 1 3130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11550985..11551427 /note="source:CACAO_M_E12058_F3_scaffold_2 5855 6295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11551428..11553884) /note="source:CACAO_M_E58324_F9_scaffold_9 7886 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11553864..11556831 /note="source:INTACT760_F85_scaffold_9-int 2726 5277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11556056..11558757) /note="source:CACAO_M_S_E14649_F328_scaffold_2 3141 5818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11557186..11559871 /note="source:INTACT760_F85_scaffold_9-int 5496 8205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11559873..11562970) /note="source:CACAO_M_E84129_F15_scaffold_10 1 3098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11562971..11565132 /note="source:CACAO_M_S_E101805_F5_scaffold_9 5776 7956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11565123..11566193 /note="source:CACAO_M_E12058_F3_scaffold_2 7144 8216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11566419..11567373 /note="source:CACAO_M_E84908_F12_scaffold_10 2432 3332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11567372..11568753) /note="source:INTACT296_F13_scaffold_9-int 13223 14446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11567387..11568988 /note="source:CACAO_M_E58324_F9_scaffold_9 21588 23179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11569161..11569203) /note="source:CACAO_M_E22186_F143_scaffold_3 4449 4491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11569878..11569978 /note="source:CACAO_M_E84908_F12_scaffold_10 3330 3429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11570056..11571162 /note="source:CACAO_M_E84908_F12_scaffold_10 3414 4432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11572568..11573223 /note="source:scaffold_4_CACTA_0494 1548 2208" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11573489..11575370 /note="source:scaffold_4_CACTA_0494 2217 4041" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11575686..11576069 /note="source:INTACT901F_F95_scaffold_6-int 1059 1442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11576171..11577771 /note="source:INTACT901F_F95_scaffold_6-int 2395 3988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11577049..11578099) /note="source:CACAO_M_E53388_F15_scaffold_8 6067 7154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11577794..11580717 /note="source:INTACT88_F12_scaffold_4-int 1267 4203" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11580810..11581723 /locus_tag="TCM_043966" /note="dbxref CacaoGD:Thecc1EG043966" mRNA 11580810..11581723 /locus_tag="TCM_043966" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043611t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage" CDS 11581156..11581485 /locus_tag="TCM_043966" /note="paralog of Thecc1EG043611t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19170.1" /translation="MKMIEASRERMQMLEENNRWMLETISQLTSFTLTIFQAQLVYLN GDENASYGSTPLVVNTNVNEENATNVVGVRNPNLINSFVVVMPTTTSTAIIPPTIIQS FVTMEQL" gene complement(11583028..11584964) /locus_tag="TCM_043967" /note="dbxref CacaoGD:Thecc1EG043967" mRNA complement(join(11583028..11583551,11583612..11583741, 11584203..11584350,11584673..11584964)) /locus_tag="TCM_043967" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002212t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(11583312..11583551,11583612..11583741, 11584203..11584350,11584673..11584712)) /locus_tag="TCM_043967" /note="paralog of Thecc1EG002212t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19171.1" /translation="MWMLPSFRFTYKKVLVQVGIEIFFLSRYILLTEWHANLGLTNQL RLALLQLSVFILVFLHFSCDEFDDKSVNVDEAEIEGVLAPFDDFIDLDVLFSNHIKSS TMNQIILTPQVIQDEAIPNTEVVPNIEVILTVEVIPDVGVDELFLMLSSIMSKQLQIL RLFMMLELLLMMLELLRLILVILPP" mobile_element complement(11586663..11588237) /note="source:CACAO_M_S_E6875_F7_scaffold_2 1394 2970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11588237..11591152) /note="source:CACAO_M_S_E88027_F247_scaffold_7 1 2904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11591153..11592507) /note="source:CACAO_M_S_E51867_F7_scaffold_4 1 1414" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11593736..11594196 /note="source:CACAO_M_E33977_F20_scaffold_4 421 908" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11594734..11598860 /locus_tag="TCM_043968" /note="dbxref CacaoGD:Thecc1EG043968" mRNA join(11594734..11595604,11598596..11598860) /locus_tag="TCM_043968" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS 11594911..11595555 /locus_tag="TCM_043968" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19172.1" /translation="MGFSSSILGTNPNKILSAAFATKQSWVQPIVSSIVIMCFMNLVL DFPQEIQVPVLPGYPLHPVVIGDGYRCACGATVEEHGFSYCNCGSQYYLSFQLRCANS LMRALKSKSHKHPLFYFGTERQRLFGNMDENYKHGLSICKKCHESLCDVPFFRCPFCD INFHLKCILLPHLIKSKYHIHPFIPKIFLKKMILESTIVIFVKKKAFRKLYLLL" mobile_element complement(11597300..11599576) /note="source:CACAO_M_S_E86211_F313_scaffold_7 842 3008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11599242..11600575 /note="source:CACAO_M_E22953_F359_scaffold_3 1784 3113" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11606323..11612548) /locus_tag="TCM_043969" /note="dbxref CacaoGD:Thecc1EG043969" mRNA complement(join(11606323..11606876,11607036..11608454, 11609396..11609467,11609777..11611180,11612468..11612548)) /locus_tag="TCM_043969" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021645001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031979t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s14420.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4116t1" CDS complement(join(11606518..11606876,11607036..11608454, 11609396..11609467,11609777..11610917)) /locus_tag="TCM_043969" /note="paralog of Thecc1EG031979t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY19173.1" /db_xref="Phytozome:POPTR_0011s14420.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SWC8" /translation="MGNTSFLVSLLVVLLLCNFMAALSMESPNITTDRLALLALKAHI TQDPQNILATNWSTATSVCNWVGVSCGSRNLRVTALDISSLGLTGTIPPHLGNLSFLA WIAVGNNNFHGSLPVELSHLRRLKFINFVNNSFSGEIPSWFGSFTRLERLFLYGNNFG GLIPSSLCSLSRLEVLGLYSNNLNGQIPADIGNFARLKYLYLDHNQLSGAIPSSIFNI SSLEEIDLSNNQLSGEIPRAIGNHPRLITLYLRENKLSGSISSSIFNISSLQRIDLGS NQLSGSIPTIPTIPRNTSSLIRIDLDTNNLTGHLPFDLFNHLPKLKGIYWSSNLLSGR IPASLFKCKELIDLSLSYNHLEGSIPTQIGNLTMLNGLYLGENNLEGEIPWQLGNLTL LTDLDCASNKFTENNELTGKVPTTIGRLIKLQSISLGYNKLQGSIPSDFCQLESLYLL SLTGNKLSGPIPACLGDLVSLRYLLLGSNSFTGSIPSTLTRLLDILRLSLSSNSLNGS LPIDIGNLKAVAIINLSQNRLSGDIPTSLGDLKDLTSLSLSGNKLDGSIPESLGDMVS LEFLDLSRNNLSGMIPMSLEKLSYLKYFNVSFNRLQGEIPNKGQFTNYSFQSFLGNEG LCGAPRLRVMPCKSNLPRRSKTATKLMKYILPAIAATISIVSLIVIFSRSRKRNAKLP TDEENLQPLAAWRRISYQELAQATDGFCESKLLGIGSFGSVYQGTLSDGTNVAVKVFN LDLEGAFESFDVECEVLRNIRHRNLVKIISSCCNIDFKALVLEFIPNGSLEKWLYSHN HFLNILQRLSIMIDVASALEYLHHGHTTPVVHCDLKPSNVLLDEDMVAHLGDFGIAKL LAEENSMIQTMTLATIGYMAPEYGSEGFVSTNGDVYSFGILLMETFTRKKPTNDMFEG EMSLKSWVQKLLPSTIIQVIDPNLLSTGNREDYAIEECALSVLQLALECSAELPEERV DMKEVVANLKKIKIKFLRMSNRFN" mobile_element complement(11613364..11613454) /note="source:CACAO_M_E43348_F5_scaffold_5 20154 20240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11613655..11616306 /note="source:CACAO_M_S_E18857_F335_scaffold_3 1 2609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11616244..11616320) /note="source:CACAO_M_E35511_F5_scaffold_5 11492 11572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11616837..11616928) /note="source:CACAO_M_S_E4534_F4_scaffold_1 4683 4774" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11625047..11625150 /note="source:CACAO_M_S_E99244_F4_scaffold_9 9271 9375" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11625097..11626469 /note="source:INTACT39F_F22_scaffold_1-int 2041 3449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11626468..11629398) /note="source:CACAO_M_E34206_F273_scaffold_4 1 2935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11629399..11629605) /note="source:INTACT537_F22_scaffold_2-int 11924 12122" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11629399..11629515 /note="source:INTACT39F_F22_scaffold_1-int 3448 3568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11629507..11630612 /note="source:INTACT39F_F22_scaffold_1-int 7432 8534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11630715..11631961 /note="source:scaffold_2_CACTA_0239 4608 5869" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11631962..11634917) /note="source:CACAO_M_E84109_F33_scaffold_10 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11634826..11634933 /note="source:CACAO_M_E12131_F243_scaffold_3 2754 2863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11634918..11638369 /note="source:scaffold_2_CACTA_0239 5866 9348" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11638896..11638973 /note="source:CACAO_M_E23991_F4_scaffold_4 16035 16113" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11641842..11642455) /note="source:scaffold_1_CACTA_0009 13237 13830" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11642457..11645158) /note="source:CACAO_M_E3654_F4_scaffold_1 5596 8304" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11645157..11648291) /note="source:CACAO_Mutator_E161_scaffold_1 5657 8799" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(11648396..11648537) /note="source:CACAO_Mutator_E161_scaffold_1 5517 5659" /mobile_element_type="transposon:TIR/Mutator" mobile_element 11648538..11651563 /note="source:CACAO_M_S_E51536_F22_scaffold_4 5661 8737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11651562..11652028) /note="source:INTACT1784F_F24_scaffold_10-int 642 1105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11652014..11652354 /note="source:CACAO_M_E43348_F5_scaffold_5 781 1125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11652337..11652743) /note="source:CACAO_Mutator_E161_scaffold_1 5158 5533" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(11652464..11653486) /note="source:scaffold_1_CACTA_0009 8882 9399" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11653247..11657071) /note="source:CACAO_Mutator_E161_scaffold_1 339 4183" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(11657072..11659833) /note="source:CACAO_M_E84106_F79_scaffold_10 1 2762" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11659834..11660378) /note="source:scaffold_1_CACTA_0009 4290 5190" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11660379..11663155) /note="source:CACAO_M_S_E144177_F233_scaffold_10 1 2777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11663179..11665235) /note="source:scaffold_1_CACTA_0009 1631 4289" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11665896..11666693) /note="source:INTACT558_F9_scaffold_9-int 72 860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11666643..11671406 /note="source:INTACT1625F_F66_scaffold_10-int 3511 7977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11670603..11671663) /note="source:INTACT711_F307_scaffold_9-int 1055 2078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11671912..11673018) /note="source:CACAO_M_E34534_F369_scaffold_5 3448 4554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11673019..11676116) /note="source:CACAO_M_S_E144175_F246_scaffold_10 1 2918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11676117..11676711 /note="source:CACAO_M_E57660_F369_scaffold_9 7233 7827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11676690..11676730 /note="source:scaffold_2_CACTA_0261 11432 11472" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11676756..11677193) /note="source:INTACT280_F60_scaffold_5-int 13870 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11677189..11677309) /note="source:INTACT280_F60_scaffold_5-int 10796 10918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11677303..11677866) /note="source:CACAO_M_S_E14218_F231_scaffold_2 1 559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11678948..11681614) /note="source:CACAO_M_S_E144173_F231_scaffold_10 1 2667" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11681929..11689749) /locus_tag="TCM_043976" /note="dbxref CacaoGD:Thecc1EG043976" mRNA complement(join(11681929..11682565,11682647..11682807, 11685927..11685995,11687529..11687586,11689584..11689749)) /locus_tag="TCM_043976" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023170t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" CDS complement(join(11682137..11682565,11682647..11682807, 11685927..11685995,11687529..11687586,11689584..11689586)) /locus_tag="TCM_043976" /note="paralog of Thecc1EG023170t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19174.1" /translation="MIKRQPVTRSRCPRRFIPLVGFEVRPSLVKKEVNFSWNFLIKLY TLVLFDLRSTHSFVYLHFVLKLDRFCSHMEETLIVTTPLEEIFAVECVYKSCVLASCF AKVDYYRKLVKFKFLKESSFVIYRHCSLVSMGNVSKVASRPMPRQEGHRYLEMPRDVL LEEGSVDFVPSVGEYLDVFLEQLLELPPEREIEFCIDLVLNMQPIWILPYQMGLAKLK ELQEKLEDLLNKGCTHPSVSP" mobile_element 11683610..11685439 /note="source:CACAO_M_E58324_F9_scaffold_9 1297 3028" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11686926..11686963 /note="source:CACAO_M_E58324_F9_scaffold_9 3026 3063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11686961..11687216 /note="source:CACAO_M_S_E101224_F9_scaffold_9 3636 3887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11687214..11689801) /note="source:scaffold_1_CACTA_0016 2871 5500" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11689798..11690648 /note="source:CACAO_M_E33933_F9_scaffold_4 3856 4719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11690627..11690943 /note="source:INTACT558_F9_scaffold_9-int 4788 5137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11690940..11694746) /note="source:CACAO_M_E50029_F245_scaffold_7 1202 4992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11694736..11694951 /note="source:CACAO_M_E12347_F245_scaffold_3 2770 2985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11694952..11696971) /note="source:CACAO_M_E4676_F9_scaffold_2 4353 6374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11696992..11699781) /note="source:CACAO_M_S_E5670_F9_scaffold_2 430 3263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11699782..11699869) /note="source:scaffold_8_CACTA_0860 9475 9562" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11700296..11700885 /note="source:scaffold_4_CACTA_0494 1 597" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11701150..11701241) /note="source:scaffold_1_CACTA_0024 2980 3071" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11702535..11702626 /note="source:scaffold_8_CACTA_0860 5273 5363" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11707542..11708726 /note="source:scaffold_1_CACTA_0024 4768 5940" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11711444..11711998) /note="source:INTACT59_F126_scaffold_9-int 9967 10522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11711996..11714945) /note="source:INTACT19_F111_scaffold_6-int 10678 13628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11714944..11719130) /note="source:INTACT19_F111_scaffold_6-int 5430 9623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11719148..11720440) /note="source:CACAO_M_E5627_F4_scaffold_2 555 1858" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11720441..11729397) /note="source:CACAO_M_S_E144165_F22_scaffold_10 1 8957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11729399..11729955) /note="source:CACAO_M_E5627_F4_scaffold_2 18331 18889" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11734644..11737671) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1 2627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11737672..11739883 /note="source:INTACT518_F239_scaffold_2-int 2791 5020" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11739884..11742594) /note="source:CACAO_M_S_E18399_F231_scaffold_3 7872 10562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11743501..11744473) /note="source:CACAO_M_E43348_F5_scaffold_5 211 1122" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11747079..11747194 /note="source:CACAO_M_E85923_F17_scaffold_12 5330 5434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11747891..11751239) /note="source:CACAO_M_E3326_F17_scaffold_1 3653 7041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11751239..11753249 /note="source:CACAO_M_E26776_F156_scaffold_4 1 2003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11753350..11754365) /note="source:CACAO_M_E14347_F12_scaffold_3 13778 14789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11754358..11754660) /note="source:CACAO_M_E5000_F96_scaffold_2 8467 8769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11754761..11755664) /note="source:CACAO_M_E5000_F96_scaffold_2 1107 2009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11755765..11756020) /note="source:CACAO_M_E73081_F96_scaffold_10 1222 1477" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11756845..11757260 /note="source:CACAO_M_E5702_F90_scaffold_2 9222 9637" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11757256..11762051) /note="source:CACAO_M_E45504_F98_scaffold_6 3089 8997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11761782..11762617) /note="source:INTACT135F_F90_scaffold_2-int 7902 8734" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11763103..11763503) /note="source:INTACT135F_F90_scaffold_2-int 7018 7412" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11764876..11765947) /note="source:CACAO_M_E85507_F96_scaffold_11 1772 2852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11770279..11770619 /note="source:INTACT135_F42_scaffold_4-int 5957 6298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11770610..11774421) /note="source:INTACT741_F17_scaffold_3-int 1 3765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11774597..11775683 /note="source:INTACT135_F42_scaffold_4-int 6708 7777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11776337..11776898) /note="source:INTACT624_F277_scaffold_2-int 10511 11072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11776887..11777026) /note="source:CACAO_M_E35188_F7_scaffold_5 6369 6508" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11777052..11777536) /note="source:CACAO_M_E35188_F7_scaffold_5 5401 6047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11777672..11777897 /note="source:CACAO_M_E14312_F12_scaffold_3 9416 9640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11777699..11780340) /note="source:CACAO_M_E35188_F7_scaffold_5 2523 5134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11780326..11780365) /note="source:INTACT624_F277_scaffold_2-int 10742 10780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11780371..11782205) /note="source:INTACT624_F277_scaffold_2-int 8957 10805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11782264..11784951 /note="source:INTACT624_F277_scaffold_2-int 1192 3909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11784946..11786648 /note="source:INTACT624_F277_scaffold_2-int 2213 3910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11786641..11788344 /note="source:INTACT624_F277_scaffold_2-int 2212 3909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11788331..11788589 /note="source:INTACT135_F42_scaffold_4-int 8733 8991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11788590..11789948) /note="source:INTACT630_F9_scaffold_5-int 8513 9881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11789949..11792930 /note="source:CACAO_M_S_E86211_F313_scaffold_7 1 3010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11792931..11793002) /note="source:INTACT739_F9_scaffold_8-int 1 72" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11793003..11793546 /note="source:INTACT135_F42_scaffold_4-int 8987 9531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11799243..11800489 /note="source:INTACT167_F5_scaffold_2-int 3833 5076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11800487..11801626 /note="source:INTACT135_F42_scaffold_4-int 10144 11286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11801727..11801911) /note="source:CACAO_M_E53388_F15_scaffold_8 4979 5163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11802375..11803615) /note="source:CACAO_M_E53388_F15_scaffold_8 3277 4515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11803606..11804244 /note="source:INTACT167_F5_scaffold_2-int 5062 5699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11804665..11804705) /note="source:scaffold_3_CACTA_0382 11837 11876" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11804835..11805002 /note="source:scaffold_3_CACTA_0382 10027 10192" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11807707..11807749 /note="source:scaffold_2_CACTA_0256 2660 2702" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11808808..11811686) /note="source:CACAO_M_E84076_F15_scaffold_10 1 2879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11811577..11811700 /note="source:CACAO_M_E36185_F9_scaffold_5 10684 10807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11812774..11813830 /note="source:CACAO_M_E4676_F9_scaffold_2 889 1925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11813803..11817877 /note="source:INTACT85_F9_scaffold_4-int 6117 10218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11820438..11821507 /note="source:CACAO_M_E9395_F12_scaffold_2 1 1073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11821506..11821633) /note="source:CACAO_M_E33933_F9_scaffold_4 2803 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11821633..11822363) /note="source:scaffold_3_CACTA_0382 11165 11878" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11822357..11823912) /note="source:CACAO_M_E58324_F9_scaffold_9 7669 9216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11824841..11827850) /note="source:CACAO_M_S_E144143_F7_scaffold_10 1 3010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11827851..11829466 /note="source:CACAO_M_E24592_F195_scaffold_4 4672 6287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11829467..11830825 /note="source:CACAO_M_S_E99035_F335_scaffold_9 6890 8394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11830562..11834048) /note="source:CACAO_M_S_E5046_F335_scaffold_1 16324 19771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11836794..11838312 /note="source:scaffold_2_CACTA_0259 2763 4274" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11839110..11839678 /note="source:CACAO_M_S_E2790_F7_scaffold_1 20156 20745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11842022..11844260) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1474 3780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11842122..11844529 /note="source:INTACT518_F239_scaffold_2-int 5841 8249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11844266..11845396) /note="source:CACAO_M_S_E5046_F335_scaffold_1 18701 19771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11845392..11846268 /note="source:CACAO_M_E24592_F195_scaffold_4 7199 8077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11846269..11853940) /note="source:INTACT1777F_F98_scaffold_10-int 1970 9641" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11854263..11856231) /note="source:INTACT1777F_F98_scaffold_10-int 1 1969" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11854809..11862154 /locus_tag="TCM_043990" /note="dbxref CacaoGD:Thecc1EG043990" mRNA join(11854809..11854848,11858160..11858208, 11861061..11862154) /locus_tag="TCM_043990" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" mobile_element 11856232..11859318 /note="source:INTACT1373F_F385_scaffold_8-int 14444 15999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11857061..11858425) /note="source:CACAO_M_E58601_F7_scaffold_9 4313 5672" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(11858162..11858208,11861061..11861223) /locus_tag="TCM_043990" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19175.1" /translation="MCAMWGLHMSWVRWWCGVTRSGSLRDAITYVATSLDVLSNILEL ITYLQKEDKGVSLIDSVIINSVSRV" mobile_element complement(11859322..11860270) /note="source:CACAO_M_E72867_F9_scaffold_10 1881 2801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11860273..11860737) /note="source:CACAO_M_E42395_F3_scaffold_5 1235 1774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11864295..11865511) /note="source:CACAO_M_E42395_F3_scaffold_5 19117 20338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11865509..11866941) /note="source:CACAO_M_E72867_F9_scaffold_10 458 1884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11866934..11866981) /note="source:CACAO_M_E59463_F12_scaffold_9 1033 1083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11867063..11867273 /note="source:INTACT265_F12_scaffold_7-int 75 277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11868228..11868422) /note="source:CACAO_M_E48538_F49_scaffold_6 12704 12902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11868895..11868957) /note="source:CACAO_M_E84179_F14_scaffold_10 10688 10752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11870824..11871430) /note="source:CACAO_M_S_E1495_F60_scaffold_1 17248 17855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11871430..11874042) /note="source:CACAO_M_S_E18399_F231_scaffold_3 1 2724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11874043..11874069) /note="source:CACAO_M_S_E7818_F60_scaffold_2 24543 24569" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11874070..11877579) /note="source:CACAO_M_E56674_F14_scaffold_8 9610 13107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11877567..11877578 /note="source:CACAO_on_S_E58_scaffold_2 1928 1939" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(11877579..11880233) /note="source:CACAO_M_E42317_F96_scaffold_5 1 2728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11880234..11881813 /note="source:INTACT126_F14_scaffold_3-int 9451 11035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11881796..11881844 /note="source:INTACT41F_F338_scaffold_1-int 32 74" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11881814..11882521 /note="source:INTACT41F_F338_scaffold_1-int 7587 8318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11882532..11884989 /note="source:INTACT82F_F344_scaffold_2-int 297 2541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11884982..11885928 /note="source:INTACT82F_F344_scaffold_2-int 2651 3624" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11885985..11886828) /note="source:CACAO_M_E24592_F195_scaffold_4 1569 2407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11886323..11887001) /note="source:scaffold_4_CACTA_0490 2040 2714" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11886908..11887020 /note="source:INTACT93F_F345_scaffold_2-int 17578 17689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11886999..11887610 /note="source:CACAO_M_S_E31635_F14_scaffold_3 10873 11484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11887611..11888335) /note="source:CACAO_M_E44883_F245_scaffold_6 2224 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11888316..11888544) /note="source:CACAO_on_S_E58_scaffold_2 13635 13868" /mobile_element_type="transposon:TIR/Mutator" mobile_element 11888349..11890459 /note="source:CACAO_M_E84824_F245_scaffold_10 840 2946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11890460..11891089 /note="source:CACAO_M_S_E31635_F14_scaffold_3 11480 12110" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11891082..11892872) /note="source:INTACT18_F7_scaffold_4-int 1154 2946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11892857..11894275) /note="source:CACAO_M_S_E7818_F60_scaffold_2 21666 23070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11894275..11897455 /note="source:scaffold_2_CACTA_0263 2002 5242" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11899954..11901338 /note="source:CACAO_M_E52576_F245_scaffold_7 5572 6952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11901624..11904218 /note="source:scaffold_2_CACTA_0263 2002 4628" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11904196..11905795) /note="source:CACAO_M_S_E1495_F60_scaffold_1 10439 11360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11905789..11905875 /note="source:CACAO_M_E5702_F90_scaffold_2 2041 2128" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11906871..11908289 /note="source:INTACT224_F176_scaffold_8-int 17628 19043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11908285..11908486) /note="source:CACAO_M_S_E1495_F60_scaffold_1 6415 6616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11908482..11909499) /note="source:CACAO_M_E3248_F5_scaffold_1 16950 18032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11908833..11912642 /note="source:CACAO_M_S_E19828_F19_scaffold_3 2495 6319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11912643..11916085) /note="source:INTACT1776F_F322_scaffold_10-int 6897 10339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11916186..11917041) /note="source:INTACT1776F_F322_scaffold_10-int 6041 6896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11923483..11923539 /note="source:CACAO_M_E50804_F245_scaffold_7 4725 4782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11923513..11925108 /note="source:CACAO_M_E11746_F9_scaffold_2 1797 3394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11925108..11926456 /note="source:INTACT789_F335_scaffold_1-int 5033 6378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11926544..11928800 /note="source:CACAO_M_S_E19828_F19_scaffold_3 6730 9000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11928795..11930067) /note="source:CACAO_M_S_E19828_F19_scaffold_3 12062 13415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11929300..11932674 /note="source:CACAO_M_S_E5046_F335_scaffold_1 477 3983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11932670..11933639 /note="source:INTACT506_F233_scaffold_3-int 4537 5532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11933626..11936693) /note="source:CACAO_M_S_E19828_F19_scaffold_3 2446 5535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11935958..11937584 /note="source:CACAO_M_E3248_F5_scaffold_1 16951 18574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11937585..11938661 /note="source:CACAO_M_S_E7818_F60_scaffold_2 15346 16429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11938662..11940468) /note="source:CACAO_M_E48588_F7_scaffold_6 6864 8666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11940469..11943443) /note="source:CACAO_M_S_E144088_F52_scaffold_10 1 2975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11943444..11943639 /note="source:CACAO_M_S_E4555_F7_scaffold_1 3195 3390" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11943611..11943822 /note="source:CACAO_M_S_E4555_F7_scaffold_1 3205 3390" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11943820..11944736) /note="source:CACAO_M_E48588_F7_scaffold_6 5947 6858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11944732..11944779) /note="source:CACAO_M_E1021_F7_scaffold_1 6002 6049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11944777..11945579 /note="source:CACAO_M_S_E14932_F233_scaffold_2 1942 2756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11946249..11947611) /note="source:CACAO_Mariner_E180_scaffold_6 1 1358" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(11947507..11947717) /note="source:INTACT336_F12_scaffold_2-int 5383 5640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11947710..11948350) /note="source:CACAO_M_E50311_F328_scaffold_7 5822 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11948747..11949387 /note="source:INTACT409F_F47_scaffold_4-int 16683 17306" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11949381..11949563) /note="source:CACAO_M_E50311_F328_scaffold_7 4789 4963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11949843..11950395 /note="source:CACAO_M_S_E98440_F51_scaffold_8 1783 2336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11951232..11951785) /note="source:scaffold_2_CACTA_0261 2297 2828" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11952754..11952911) /note="source:INTACT262_F12_scaffold_3-int 12973 13131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11953897..11953977) /note="source:CACAO_M_S_E89272_F5_scaffold_8 1 80" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11953978..11954432 /note="source:CACAO_M_E4676_F9_scaffold_2 12626 13088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11954678..11956935 /note="source:INTACT1327F_F381_scaffold_8-int 6067 8200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11956925..11957024) /note="source:CACAO_M_S_E1495_F60_scaffold_1 15167 15259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11956936..11957023 /note="source:CACAO_M_S_E84326_F143_scaffold_6 1 85" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11957020..11966556 /note="source:CACAO_M_S_E64440_F7_scaffold_5 4264 13800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11966557..11967421) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 6677" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11969343..11971954) /note="source:CACAO_M_E59641_F12_scaffold_9 10420 13004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11973383..11973472 /note="source:scaffold_8_CACTA_0860 500 589" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11976809..11978385) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6733 8217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11979171..11981444) /note="source:CACAO_M_E36294_F51_scaffold_5 11570 13861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11981445..11984453 /note="source:CACAO_M_E48451_F324_scaffold_6 1 3022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11981445..11982050) /note="source:CACAO_M_E59650_F290_scaffold_9 4810 7662" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11984006..11984453) /note="source:CACAO_M_E59650_F290_scaffold_9 2174 3473" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11984454..11985284 /note="source:CACAO_M_S_E86189_F51_scaffold_7 2272 3103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11985985..11988000) /note="source:scaffold_2_CACTA_0262 6552 8555" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11988001..11988225) /note="source:INTACT170_F12_scaffold_5-int 4639 6822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11988222..11988867 /note="source:INTACT329_F199_scaffold_2-int 1262 1909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11989052..11989447 /note="source:scaffold_9_CACTA_0927 6679 7073" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11989442..11989857 /note="source:INTACT537_F22_scaffold_2-int 10352 10768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11989960..11991039) /note="source:INTACT336_F12_scaffold_2-int 5812 6892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11991538..11991852) /note="source:INTACT336_F12_scaffold_2-int 4942 5254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11991580..11992063) /note="source:scaffold_9_CACTA_0937 6413 6936" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11992059..11995685) /note="source:INTACT597_F267_scaffold_2-int 8971 12630" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11992930..11998018) /note="source:scaffold_2_CACTA_0262 6267 11404" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11998020..11998650 /note="source:INTACT329_F199_scaffold_2-int 1262 1894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12001559..12003009) /note="source:INTACT125_F13_scaffold_10-int 14341 15785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12002673..12005390 /note="source:CACAO_M_E48538_F49_scaffold_6 1994 6367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12005388..12005863 /note="source:INTACT537_F22_scaffold_2-int 10358 10833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12005878..12008922) /note="source:CACAO_M_E84004_F201_scaffold_10 1 3027" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12008923..12009357 /note="source:CACAO_M_E48538_F49_scaffold_6 6378 6813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12009350..12010800) /note="source:INTACT125_F13_scaffold_10-int 1825 3247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12012562..12013735) /note="source:CACAO_M_E11328_F51_scaffold_2 1933 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12013740..12016117 /note="source:INTACT226_F51_scaffold_1-int 1618 3983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12016118..12023890 /note="source:CACAO_M_E48700_F15_scaffold_6 1 7740" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12018829..12026672) /note="source:CACAO_M_E3287_F15_scaffold_1 149 8000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12026590..12026799 /note="source:CACAO_M_E1146_F15_scaffold_1 2567 2757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12026800..12028803 /note="source:CACAO_M_S_E84840_F51_scaffold_7 3988 6010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12028795..12028942) /note="source:CACAO_M_E43672_F60_scaffold_5 7216 7365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12028943..12031925) /note="source:CACAO_M_S_E144055_F7_scaffold_10 1 2983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12031926..12036708 /note="source:INTACT226_F51_scaffold_1-int 6311 11064" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12036707..12037075 /note="source:CACAO_M_E49857_F85_scaffold_7 20683 21045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12038639..12040095 /note="source:INTACT163_F158_scaffold_5-int 9480 10934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12040096..12040259 /note="source:CACAO_M_E84893_F51_scaffold_10 2938 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12041173..12041896) /note="source:CACAO_M_E58324_F9_scaffold_9 9503 10225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12043548..12043825) /note="source:CACAO_M_E58324_F9_scaffold_9 7664 7940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12046174..12046822 /note="source:CACAO_M_S_E4591_F5_scaffold_1 17895 18544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12046857..12047698) /note="source:scaffold_4_CACTA_0493 793 1625" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12047699..12049010) /note="source:CACAO_M_E58324_F9_scaffold_9 8956 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12049011..12052017) /note="source:CACAO_M_E83986_F7_scaffold_10 1 3007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12055045..12055330 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18620 18943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12055313..12056300 /note="source:CACAO_M_E5899_F5_scaffold_2 20810 21793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12056729..12057200 /note="source:CACAO_M_S_E4591_F5_scaffold_1 19801 20256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12057091..12057319) /note="source:CACAO_M_E49857_F85_scaffold_7 20639 20845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12057299..12057945) /note="source:CACAO_M_S_E5046_F335_scaffold_1 17491 18135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12060142..12061575) /note="source:CACAO_M_E52877_F7_scaffold_8 3162 4582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12062751..12063776 /note="source:CACAO_M_E5899_F5_scaffold_2 20810 21828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12064651..12064779 /note="source:CACAO_M_E22265_F82_scaffold_3 3233 3360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12064721..12064787) /note="source:INTACT568_F81_scaffold_2-int 5227 5294" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12064993..12065102) /note="source:CACAO_M_E14312_F12_scaffold_3 11193 11302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12065175..12065281) /note="source:CACAO_M_E14312_F12_scaffold_3 11096 11205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12065282..12068298) /note="source:CACAO_M_E83979_F201_scaffold_10 1 3017" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12069990..12070009) /note="source:CACAO_Again_on_E14_scaffold_1 723 789" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(12070010..12070088) /note="source:scaffold_7_CACTA_0789 13923 14002" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12071013..12071706 /note="source:CACAO_M_E56778_F42_scaffold_8 3746 4450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12080084..12080412 /note="source:CACAO_M_E56778_F42_scaffold_8 4850 5178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12083102..12084322) /note="source:INTACT300_F7_scaffold_5-int 5040 6264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12084561..12085362) /note="source:CACAO_M_E11032_F42_scaffold_2 841 1640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12085463..12089685 /note="source:INTACT91_F141_scaffold_4-int 2273 6489" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12089786..12093405) /note="source:INTACT1263F_F42_scaffold_7-int 1 3646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12094457..12094538) /note="source:INTACT296_F13_scaffold_9-int 13176 13256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12097063..12097699 /note="source:CACAO_M_E12385_F15_scaffold_3 1 636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12098530..12098973) /note="source:INTACT584_F15_scaffold_3-int 9298 9742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12102113..12102265) /note="source:CACAO_M_E22265_F82_scaffold_3 4030 4180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12104922..12105009 /note="source:CACAO_M_E5899_F5_scaffold_2 21171 21258" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12105347..12105447 /note="source:CACAO_M_E5899_F5_scaffold_2 21678 21780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12105570..12105640 /note="source:CACAO_M_E5899_F5_scaffold_2 21732 21811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12107785..12108202) /note="source:INTACT135F_F90_scaffold_2-int 13582 13999" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12112062..12114550) /note="source:CACAO_M_E36408_F15_scaffold_5 616 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12114651..12115207 /note="source:CACAO_M_E964_F15_scaffold_1 2545 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12115017..12115231) /note="source:INTACT39F_F22_scaffold_1-int 13705 13920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12118007..12119550) /note="source:CACAO_M_E83970_F17_scaffold_10 1 1544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12121450..12121485 /note="source:INTACT56_F124_scaffold_1-int 2300 2337" /mobile_element_type="retrotransposon:LTR/Copia" gene 12122532..12128535 /locus_tag="TCM_044005" /note="dbxref CacaoGD:Thecc1EG044005" mRNA join(12122532..12122778,12122888..12122959, 12123425..12123548,12123635..12123722,12123837..12123974, 12124067..12124154,12124252..12124329,12127987..>12128015) /locus_tag="TCM_044005" /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30155.m001603" /inference="similar to AA sequence:ricco:30155.m001603" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9432t11; inference alignment:Newbler:10:TSA:cgbaL_g03135t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc585t8" mRNA join(12122597..12122778,12122888..12122959, 12123425..12123548,12123635..12123722,12123837..12123974, 12124067..12124154,12124252..12124372,12127987..12128535) /locus_tag="TCM_044005" /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30155.m001603" /inference="similar to AA sequence:ricco:30155.m001603" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03135t00001" CDS join(12122688..12122778,12122888..12122959, 12123425..12123548,12123635..12123722,12123837..12123974, 12124067..12124154,12124252..12124372,12127987..12128161) /locus_tag="TCM_044005" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30155.m001603" /codon_start=1 /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1" /protein_id="EOY19176.1" /db_xref="TAIR:AT2G25100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SEZ6" /translation="MGSEAEAPLPKWASTPCIMGIDEAGRGPVLGPMVYGCLYCARSY QKALATLNFADSKTLKEEKREELFELLKADESIGWSVDVIDPRELSAKMLKKHKVNLN EMSHDSATGLIKTVLNKGVLLTEVYLDTVGDPDKYRIKLSERFPSIKFVVAKKADSLY PVVSGASIVAKVTRDKALREWVLEETAENMHRSFGSGYPGDPETKAWLEHHKHSVFGF PTLVRFSWGTCNSYYKDMVEVLWESDKVDEDVPNSSSGKQLKLRNVGFTTSKRKSEEI ESSAKGSCKFFQARKLELLTHF" CDS join(12122688..12122778,12122888..12122959, 12123425..12123548,12123635..12123722,12123837..12123974, 12124067..12124154,12124252..12124329,12127987..>12128015) /locus_tag="TCM_044005" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30155.m001603" /codon_start=1 /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2" /protein_id="EOY19177.1" /db_xref="TAIR:AT2G25100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SEZ6" /translation="MGSEAEAPLPKWASTPCIMGIDEAGRGPVLGPMVYGCLYCARSY QKALATLNFADSKTLKEEKREELFELLKADESIGWSVDVIDPRELSAKMLKKHKVNLN EMSHDSATGLIKTVLNKGVLLTEVYLDTVGDPDKYRIKLSERFPSIKFVVAKKADSLY PVVSGASIVAKVTRDKALREWVLEETAENMHRSFGSGYPGDPETKAWLEHHKHSVFGF PTLVRFSWGNLIKWMKMF" mobile_element complement(12130081..12130381) /note="source:CACAO_M_E23991_F4_scaffold_4 13950 14244" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12130421..12130466 /note="source:CACAO_M_S_E99244_F4_scaffold_9 10167 10211" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12132546..12133915 /note="source:CACAO_M_E58601_F7_scaffold_9 4313 5683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12135023..12136340 /note="source:CACAO_M_S_E99244_F4_scaffold_9 3856 5174" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12140443..12140531) /note="source:CACAO_M_E5627_F4_scaffold_2 6290 6379" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12140650..12141061 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18153 18553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12141208..12141253) /note="source:CACAO_M_S_E4534_F4_scaffold_1 3529 3952" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12141254..12141610) /note="source:CACAO_M_E58601_F7_scaffold_9 9619 9939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12141820..12142080) /note="source:scaffold_6_CACTA_0702 9422 9681" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12142469..12142652 /note="source:CACAO_M_S_E4591_F5_scaffold_1 19587 19786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12142716..12143364 /note="source:scaffold_6_CACTA_0702 8259 8892" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12143370..12143472 /note="source:INTACT701_F305_scaffold_10-int 1 102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12143415..12144158) /note="source:CACAO_M_E58601_F7_scaffold_9 10134 10870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12145154..12145905) /note="source:CACAO_M_E58601_F7_scaffold_9 8820 9547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12145865..12145914 /note="source:CACAO_M_E35511_F5_scaffold_5 4483 4533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12145913..12146074) /note="source:CACAO_M_S_E4591_F5_scaffold_1 19587 19769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12146343..12148201) /note="source:CACAO_M_E83965_F4_scaffold_10 1 1859" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12148316..12148576 /note="source:scaffold_6_CACTA_0702 9422 9681" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12148923..12149315) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18585 18943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12150018..12153771 /note="source:CACAO_M_E50108_F4_scaffold_7 1 3760" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12153772..12156773) /note="source:CACAO_M_S_E144016_F7_scaffold_10 1 3002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12156774..12158473 /note="source:CACAO_M_E3654_F4_scaffold_1 3476 5181" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12158463..12160709) /note="source:CACAO_LINE_E_33_scaffold_10 1 2247" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 12160703..12163813 /note="source:INTACT10_F4_scaffold_6-int 5451 8573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12163881..12164434 /note="source:CACAO_M_S_E4534_F4_scaffold_1 4216 4768" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12164676..12167956 /note="source:CACAO_M_E53135_F19_scaffold_8 2427 5674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12167957..12167967) /note="source:CACAO_M_E3499_F262_scaffold_1 2741 2755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12167968..12170875 /note="source:INTACT674_F296_scaffold_6-int 4 2922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12170876..12171555 /note="source:CACAO_M_E53135_F19_scaffold_8 5670 6321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12172656..12175645) /note="source:CACAO_M_S_E144012_F324_scaffold_10 1 2990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12178634..12178689 /note="source:scaffold_2_CACTA_0262 17032 17092" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12178647..12178693) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5673 5720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12179724..12180012 /note="source:CACAO_M_S_E4591_F5_scaffold_1 17896 18183" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12180015..12182920) /note="source:CACAO_M_S_E143869_F164_scaffold_10 1 2904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12182921..12183106 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18181 18397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12185280..12185761 /note="source:scaffold_2_CACTA_0262 7611 8089" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12185757..12185830 /note="source:INTACT597_F267_scaffold_2-int 8589 8667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12185820..12187644) /note="source:scaffold_2_CACTA_0262 6649 8555" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12187633..12187727 /note="source:scaffold_2_CACTA_0261 11420 11514" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12188882..12189024 /note="source:CACAO_M_E42809_F5_scaffold_5 6467 7637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12189025..12192016) /note="source:INTACT56_F124_scaffold_1-int 6491 9488" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12192017..12192283 /note="source:CACAO_M_E42809_F5_scaffold_5 7638 9853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12192020..12192994) /note="source:CACAO_M_S_E14932_F233_scaffold_2 195 1165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12193132..12193454 /note="source:INTACT409F_F47_scaffold_4-int 17873 18176" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12193201..12193523) /note="source:scaffold_2_CACTA_0262 16619 16978" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12193559..12193838) /note="source:CACAO_M_S_E5588_F305_scaffold_2 377 656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12196493..12196601) /note="source:CACAO_M_E5326_F22_scaffold_2 2133 2223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12196592..12196939) /note="source:scaffold_2_CACTA_0262 5420 5767" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12196937..12199922) /note="source:scaffold_9_CACTA_0927 10632 13600" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12199912..12200610) /note="source:scaffold_9_CACTA_0927 7245 7965" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12200617..12203588) /note="source:CACAO_M_E85009_F7_scaffold_10 1 2997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12203594..12204325) /note="source:scaffold_9_CACTA_0927 6509 7238" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12204324..12207218 /note="source:CACAO_M_S_E64440_F7_scaffold_5 3968 6913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12207219..12207856 /note="source:CACAO_M_E5326_F22_scaffold_2 19989 20596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12207857..12209830) /note="source:CACAO_M_E83943_F47_scaffold_10 1 1974" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12211128..12212148 /note="source:scaffold_2_CACTA_0262 7555 8556" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12211253..12212167) /note="source:scaffold_9_CACTA_0927 4255 5160" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12212145..12212288 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18377 18519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12212380..12212483) /note="source:scaffold_2_CACTA_0262 13822 13921" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12212596..12212873 /note="source:CACAO_M_E58601_F7_scaffold_9 8783 9075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12212916..12213898) /note="source:CACAO_M_S_E14932_F233_scaffold_2 8798 9773" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12213937..12213997 /note="source:CACAO_M_S_E4863_F51_scaffold_1 4346 4406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12214354..12214788) /note="source:CACAO_M_S_E6875_F7_scaffold_2 13980 14410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12214819..12214884 /note="source:scaffold_9_CACTA_0927 11314 11379" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12214885..12217742) /note="source:CACAO_M_S_E119734_F305_scaffold_9 1 5289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12218966..12219349 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5429 5837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12219852..12221363) /note="source:CACAO_M_S_E14932_F233_scaffold_2 1090 2658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12221525..12222500) /note="source:CACAO_M_S_E14932_F233_scaffold_2 1 984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12222501..12222550 /note="source:INTACT597_F267_scaffold_2-int 6611 6660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12222754..12224282 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18937 20444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12224794..12226221) /note="source:scaffold_9_CACTA_0927 9192 10611" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12226093..12226248 /note="source:CACAO_M_E5326_F22_scaffold_2 16540 16696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12226492..12226532 /note="source:CACAO_M_E33213_F12_scaffold_4 9861 9901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12226502..12227431 /note="source:CACAO_M_E42809_F5_scaffold_5 9909 10844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12233022..12235777 /note="source:CACAO_M_E5284_F369_scaffold_2 1 2708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12237483..12238341 /note="source:INTACT649F_F368_scaffold_5-int 1 877" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12238344..12238428 /note="source:INTACT649F_F368_scaffold_5-int 789 877" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12238402..12239614 /note="source:INTACT649F_F368_scaffold_5-int 14911 16130" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12243476..12244302) /note="source:CACAO_M_E23991_F4_scaffold_4 4786 5600" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12245954..12246978) /note="source:CACAO_M_E23991_F4_scaffold_4 14459 15492" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12246998..12247247) /note="source:CACAO_M_E23991_F4_scaffold_4 3154 3411" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12247481..12247549) /note="source:scaffold_8_CACTA_0858 10666 10735" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12248580..12249099) /note="source:CACAO_M_E50108_F4_scaffold_7 15422 15941" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12249100..12250544 /note="source:CACAO_M_S_E15657_F60_scaffold_2 3 1444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12250537..12251312 /note="source:CACAO_M_E24389_F60_scaffold_4 1795 2571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12251294..12252068 /note="source:CACAO_M_E65050_F7_scaffold_9 15390 16069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12251305..12251904) /note="source:CACAO_M_S_E65716_F44_scaffold_5 9206 9817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12252017..12252934) /note="source:CACAO_M_E33213_F12_scaffold_4 8523 9449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12252964..12256745) /note="source:CACAO_M_E23991_F4_scaffold_4 6132 9874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12256762..12257317) /note="source:CACAO_M_S_E34046_F60_scaffold_4 2956 3509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12257310..12257446) /note="source:CACAO_M_E42809_F5_scaffold_5 5153 5289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12257444..12261717 /note="source:CACAO_M_S_E15657_F60_scaffold_2 2564 6840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12261717..12262365 /note="source:CACAO_M_S_E1495_F60_scaffold_1 15637 16279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12262368..12263084) /note="source:CACAO_M_E11518_F369_scaffold_2 1994 2711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12263082..12263434 /note="source:INTACT537_F22_scaffold_2-int 11924 12169" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12263359..12264539) /note="source:INTACT39F_F22_scaffold_1-int 2041 3276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12263950..12264612) /note="source:INTACT649F_F368_scaffold_5-int 10102 10761" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12264585..12266271 /note="source:CACAO_M_E14578_F60_scaffold_3 10 1712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12266272..12267603) /note="source:CACAO_M_E24706_F4_scaffold_4 1 1348" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12269961..12271820) /note="source:CACAO_M_E83912_F4_scaffold_10 1 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12272919..12273143 /note="source:INTACT255_F60_scaffold_8-int 1 225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12274107..12275195 /note="source:CACAO_M_E43672_F60_scaffold_5 18467 19554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12276254..12276979) /note="source:INTACT255_F60_scaffold_8-int 5383 6112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12280168..12280363 /note="source:INTACT280_F60_scaffold_5-int 10458 10658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12281139..12281952 /note="source:CACAO_M_E49885_F60_scaffold_7 1070 1882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12281953..12284925) /note="source:CACAO_M_S_E143946_F7_scaffold_10 1 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12284926..12287465 /note="source:CACAO_M_E24389_F60_scaffold_4 1880 4423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12284926..12284971) /note="source:INTACT280_F60_scaffold_5-int 17536 17581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12287445..12288150) /note="source:CACAO_M_S_E109853_F60_scaffold_9 14242 14930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12288196..12288572 /note="source:CACAO_M_E33213_F12_scaffold_4 10331 10706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12288569..12288581 /note="source:CACAO_M_S_E7105_F60_scaffold_2 5122 5367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12288582..12290082 /note="source:CACAO_M_E36574_F4_scaffold_5 3888 5386" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12290083..12290145 /note="source:CACAO_M_S_E7105_F60_scaffold_2 5368 6698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12291227..12291672 /note="source:CACAO_M_E3654_F4_scaffold_1 499 921" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12291768..12292192 /note="source:CACAO_M_E35674_F13_scaffold_5 3361 4204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12292994..12294839 /note="source:INTACT242_F12_scaffold_1-int 2749 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12294835..12295532 /note="source:INTACT487_F4_scaffold_2-int 1030 1724" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12294840..12295678) /note="source:INTACT453_F4_scaffold_9-int 16946 17771" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12296071..12296335 /note="source:CACAO_M_S_E4534_F4_scaffold_1 3762 4076" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12296630..12297334 /note="source:CACAO_M_S_E4534_F4_scaffold_1 4066 4768" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12298637..12300816 /note="source:CACAO_M_E12489_F323_scaffold_3 1 2168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12301443..12302120 /note="source:CACAO_M_E22348_F13_scaffold_3 7406 8075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12302120..12302326) /note="source:INTACT17_F7_scaffold_3-int 4215 4425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12302463..12309568 /note="source:INTACT11_F4_scaffold_8-int 1656 8750" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12310536..12311766) /note="source:CACAO_M_S_E4591_F5_scaffold_1 19207 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12311752..12311931) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17895 18074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12318814..12321800) /note="source:CACAO_M_E43710_F7_scaffold_5 1 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12321660..12321820 /note="source:INTACT9_F4_scaffold_5-int 2082 2250" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12324581..12325852 /note="source:CACAO_M_E85180_F12_scaffold_10 8389 9725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12325784..12325864) /note="source:CACAO_M_E12463_F12_scaffold_3 4646 4709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12328552..12329782) /note="source:CACAO_M_E5627_F4_scaffold_2 3755 4985" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12332987..12333467 /note="source:CACAO_M_S_E4534_F4_scaffold_1 2978 3450" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12333571..12335283 /note="source:scaffold_9_CACTA_0931 15071 16826" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12336998..12339201 /note="source:INTACT137_F12_scaffold_9-int 717 2926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12341264..12343900 /note="source:CACAO_M_S_E146633_F12_scaffold_13 2910 5548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12345156..12347323 /note="source:CACAO_M_E35674_F13_scaffold_5 782 2911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12348970..12352569 /note="source:CACAO_M_E10693_F272_scaffold_2 2624 6198" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12352570..12363496) /note="source:INTACT213_F172_scaffold_10-int 1 10927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12363497..12365345) /note="source:INTACT610_F272_scaffold_5-int 1755 3602" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12365323..12365504) /note="source:CACAO_M_S_E145698_F277_scaffold_11 15897 16059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12365509..12365804 /note="source:CACAO_M_E42514_F40_scaffold_5 17381 17675" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12370677..12370739 /note="source:CACAO_M_E3626_F245_scaffold_1 2947 3010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12370727..12370787 /note="source:INTACT39F_F22_scaffold_1-int 5182 5241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12374229..12374427 /note="source:CACAO_M_E49857_F85_scaffold_7 18630 18827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12374424..12375325) /note="source:CACAO_M_S_E64023_F13_scaffold_5 18744 19647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12375309..12377755 /note="source:CACAO_M_S_E98180_F42_scaffold_8 6937 9415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12377756..12377965) /note="source:CACAO_M_E12297_F14_scaffold_3 9160 9369" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12380049..12380964) /note="source:CACAO_M_E12297_F14_scaffold_3 6346 7261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12385031..12386085 /note="source:CACAO_M_S_E54636_F42_scaffold_5 6393 7448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12386188..12386607) /note="source:CACAO_M_E58440_F42_scaffold_9 1998 2422" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12388650..12388711 /note="source:INTACT204F_F52_scaffold_3-int 8872 8929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12388656..12390700) /note="source:CACAO_M_E69386_F281_scaffold_9 1 2047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12390701..12391054) /note="source:INTACT646F_F95_scaffold_5-int 8860 9220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12390833..12391604 /note="source:INTACT563_F255_scaffold_10-int 5158 5928" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12391615..12392792 /note="source:CACAO_M_E49857_F85_scaffold_7 19860 21045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12393730..12396265 /note="source:CACAO_M_E11054_F12_scaffold_2 10481 13003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12396487..12396628 /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12396622..12398108 /note="source:CACAO_M_S_E65716_F44_scaffold_5 1489 2937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12398107..12400719 /note="source:CACAO_M_E58684_F78_scaffold_9 8084 10790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12400720..12401402 /note="source:INTACT1782F_F71_scaffold_10-int 5321 6002" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12401403..12402453) /note="source:CACAO_M_E58819_F24_scaffold_9 22186 23250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12404659..12410158) /note="source:CACAO_M_S_E6875_F7_scaffold_2 15715 21227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12410159..12412283 /note="source:CACAO_M_E58850_F15_scaffold_9 1 2116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12412384..12413131) /note="source:CACAO_M_S_E51867_F7_scaffold_4 5648 6393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12413132..12414897) /note="source:INTACT504_F7_scaffold_1-int 2593 4354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12414898..12417719) /note="source:CACAO_M_E83880_F15_scaffold_10 1 2822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12417720..12420367) /note="source:CACAO_M_S_E34031_F7_scaffold_4 1 2663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12420707..12420796) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18870 18962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12422165..12423129 /note="source:CACAO_M_E1841_F5_scaffold_1 9632 10576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12423652..12424876 /note="source:CACAO_M_E1841_F5_scaffold_1 13932 15162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12425379..12425752) /note="source:INTACT781_F89_scaffold_5-int 5399 5775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12425960..12428489) /note="source:CACAO_M_S_E85177_F5_scaffold_7 17612 20247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12429118..12429541) /note="source:CACAO_M_S_E5046_F335_scaffold_1 15308 15733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12429523..12429595) /note="source:CACAO_M_E1021_F7_scaffold_1 5267 5340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12429626..12430043 /note="source:INTACT423_F7_scaffold_6-int 4775 5189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12429979..12430219) /note="source:INTACT781_F89_scaffold_5-int 4178 4419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12430419..12430480) /note="source:INTACT781_F89_scaffold_5-int 4187 4247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12431002..12433957) /note="source:CACAO_M_S_E64440_F7_scaffold_5 3971 6919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12433114..12434635 /note="source:CACAO_M_E14312_F12_scaffold_3 16603 18130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12434637..12435484 /note="source:CACAO_M_E14312_F12_scaffold_3 280 1089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12436838..12436929) /note="source:CACAO_M_S_E5046_F335_scaffold_1 17554 17649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12442536..12443792 /note="source:CACAO_M_E42589_F12_scaffold_5 1 1232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12444086..12445631) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18869 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12455444..12458448 /note="source:CACAO_M_E1826_F89_scaffold_1 1 3000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12461474..12464377) /note="source:CACAO_M_S_E143869_F164_scaffold_10 1 2904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12475842..12475853 /note="source:scaffold_4_CACTA_0492 2151 2245" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12475854..12475939) /note="source:CACAO_LINE_E_135_scaffold_5 801 887" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(12475941..12478834) /note="source:CACAO_M_S_E86211_F313_scaffold_7 14 3010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12478835..12478931) /note="source:INTACT649F_F368_scaffold_5-int 10114 10206" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12478932..12478942) /note="source:CACAO_M_S_E86211_F313_scaffold_7 1 13" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12481758..12487766 /note="source:CACAO_M_E22886_F96_scaffold_3 1 7372" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12489282..12490695 /note="source:CACAO_M_S_E122077_F328_scaffold_10 3 1407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12490697..12493272) /note="source:CACAO_M_S_E143688_F259_scaffold_10 1 2576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12493273..12494188 /note="source:CACAO_M_E50311_F328_scaffold_7 4707 5579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12494269..12494529 /note="source:CACAO_M_E50311_F328_scaffold_7 5573 5835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12494848..12495483 /note="source:CACAO_M_E50311_F328_scaffold_7 5822 6458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12494948..12495872 /note="source:scaffold_2_CACTA_0262 8028 8943" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12495125..12496667) /note="source:CACAO_M_E52541_F82_scaffold_7 6074 7263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12496328..12501224 /note="source:CACAO_M_E8481_F245_scaffold_2 3291 8989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12501305..12501565 /note="source:CACAO_M_E8481_F245_scaffold_2 5573 5835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12501878..12502496 /note="source:CACAO_M_E8481_F245_scaffold_2 5822 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12506660..12506933) /note="source:INTACT1896F_F100_scaffold_16-int 10329 10606" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(12508393..12508621) /note="source:scaffold_2_CACTA_0262 7429 7661" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12508803..12509082) /note="source:scaffold_2_CACTA_0262 7146 7425" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12514524..12517482 /note="source:CACAO_M_E57385_F197_scaffold_9 1789 4720" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(12514903..12516952) /locus_tag="TCM_044032" /note="dbxref CacaoGD:Thecc1EG044032" mRNA complement(join(12514903..12515154,12515648..12515698, 12516710..12516952)) /locus_tag="TCM_044032" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc2307t2_G3" CDS complement(join(12514989..12515154,12515648..12515685)) /locus_tag="TCM_044032" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19178.1" /translation="MLATLYCQNFIDWFKIICRQSISSRISFGLTSLEIVGLHSCTLL VISRSICHCRIILNIWLTVLLCV" mobile_element 12524270..12525209 /note="source:INTACT231_F12_scaffold_4-int 6709 7644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12525318..12527059 /note="source:INTACT231_F12_scaffold_4-int 7815 9533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12534688..12547956 /note="source:INTACT1896F_F100_scaffold_16-int 229 17358" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(12556399..12564111) /note="source:scaffold_4_CACTA_0492 272 7947" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12562579..12569244 /note="source:INTACT1896F_F100_scaffold_16-int 1215 11546" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 12569268..12569325 /note="source:INTACT642F_F365_scaffold_5-int 5911 5968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12569318..12569647 /note="source:INTACT642F_F365_scaffold_5-int 6107 6455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12570653..12572070) /note="source:CACAO_M_E53388_F15_scaffold_8 3636 5049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12572071..12574950 /note="source:CACAO_M_E84316_F15_scaffold_10 1 2877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12574951..12575296 /note="source:INTACT135_F42_scaffold_4-int 12892 13238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12575297..12580405) /note="source:scaffold_4_CACTA_0492 12187 17335" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12583832..12584256 /note="source:INTACT1896F_F100_scaffold_16-int 9282 9706" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(12584754..12585274) /note="source:scaffold_4_CACTA_0492 17005 17527" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12596187..12603209) /note="source:scaffold_4_CACTA_0492 3 7057" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12599852..12603599 /note="source:INTACT1941F_F100_scaffold_16-int 13770 17490" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(12603600..12606605) /note="source:INTACT39F_F22_scaffold_1-int 4426 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12606693..12607440) /note="source:INTACT39F_F22_scaffold_1-int 3567 4311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12607540..12607959) /note="source:CACAO_M_S_E5046_F335_scaffold_1 17482 17896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12623476..12626430) /note="source:CACAO_M_E80984_F15_scaffold_10 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12626287..12626451) /note="source:INTACT407F_F356_scaffold_4-int 5154 5318" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12626752..12634700) /note="source:scaffold_4_CACTA_0492 3 8010" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12635266..12637561 /note="source:CACAO_M_E50311_F328_scaffold_7 4436 5579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12637642..12637931 /note="source:CACAO_M_E50311_F328_scaffold_7 5573 5867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12637994..12638039 /note="source:CACAO_M_E5326_F22_scaffold_2 3413 3458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12638244..12638897 /note="source:CACAO_M_E50311_F328_scaffold_7 5809 6461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12638835..12638906) /note="source:CACAO_M_E50311_F328_scaffold_7 9477 9551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12638961..12648326) /note="source:scaffold_4_CACTA_0492 3 8010" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12667087..12668724) /note="source:scaffold_4_CACTA_0492 11393 13027" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12713020..12713489 /note="source:INTACT1896F_F100_scaffold_16-int 4145 4615" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 12714125..12714912 /note="source:INTACT1896F_F100_scaffold_16-int 9039 9827" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 12715658..12716265 /note="source:INTACT6861F_F55_scaffold_78-int 1951 2558" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(12721267..12721524) /note="source:INTACT7724F_F100_scaffold_143-int 6188 6447" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(12721760..12721829) /note="source:INTACT7724F_F100_scaffold_143-int 2584 2653" /mobile_element_type="retrotransposon:LTR/Unclassified" assembly_gap 12728146..12738145 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(12738149..12738419) /note="source:CACAO_M_S_E5162_F13_scaffold_1 361 632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12746109..12747641 /note="source:CACAO_M_E43672_F60_scaffold_5 18657 20191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12747581..12747666) /note="source:INTACT505_F28_scaffold_3-int 12883 12972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12747642..12747897) /note="source:CACAO_M_E35511_F5_scaffold_5 262 517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12747654..12747862 /note="source:CACAO_M_S_E89272_F5_scaffold_8 18043 18252" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12747833..12748226 /note="source:INTACT167_F5_scaffold_2-int 14561 14951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12748178..12748231) /note="source:CACAO_M_E639_F17_scaffold_1 2824 2878" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12748228..12749959) /note="source:INTACT721_F2_scaffold_7-int 145 1855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12749937..12750049 /note="source:CACAO_M_S_E99244_F4_scaffold_9 9252 9360" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12749958..12750145) /note="source:scaffold_9_CACTA_0927 6499 6686" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12750246..12750854) /note="source:scaffold_9_CACTA_0927 15223 15854" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12750258..12750794 /note="source:INTACT280_F60_scaffold_5-int 8720 9469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12750795..12751103) /note="source:CACAO_M_S_E101631_F270_scaffold_9 6486 6777" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12753789..12754652) /note="source:scaffold_9_CACTA_0927 4945 5826" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12754589..12754893) /note="source:INTACT410F_F357_scaffold_4-int 452 723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12755017..12755665) /note="source:INTACT191F_F350_scaffold_3-int 1696 2635" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12755027..12755801) /note="source:scaffold_9_CACTA_0926 873 1685" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12756001..12756875) /note="source:INTACT191F_F350_scaffold_3-int 433 1304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12759740..12759905 /note="source:CACAO_M_E43482_F345_scaffold_5 2144 2301" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12759864..12760247) /note="source:CACAO_on_S_E58_scaffold_2 9592 9978" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(12760157..12760426) /note="source:CACAO_M_E35511_F5_scaffold_5 16070 16331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12760427..12760768) /note="source:INTACT191F_F350_scaffold_3-int 110 453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12763515..12763569) /note="source:INTACT410F_F357_scaffold_4-int 4280 4333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12764350..12764917 /note="source:CACAO_M_E45308_F72_scaffold_6 1 572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12764918..12775569) /note="source:INTACT1638F_F98_scaffold_10-int 1 10652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12775570..12777952 /note="source:CACAO_M_E36584_F72_scaffold_5 567 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12777953..12778989) /note="source:INTACT410F_F357_scaffold_4-int 2595 3632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12778490..12779651 /note="source:INTACT224_F176_scaffold_8-int 16245 17381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12778826..12779749) /note="source:scaffold_9_CACTA_0927 5913 6845" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12779659..12779808 /note="source:INTACT224_F176_scaffold_8-int 4798 4941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12779809..12782394) /note="source:CACAO_M_E3659_F345_scaffold_1 3 2643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12782395..12783326) /note="source:scaffold_9_CACTA_0927 4982 5914" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12783295..12783939) /note="source:INTACT410F_F357_scaffold_4-int 110 754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12783932..12783974 /note="source:INTACT597_F267_scaffold_2-int 8629 8671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12783967..12784112) /note="source:scaffold_9_CACTA_0937 3747 3899" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12784110..12786143 /note="source:scaffold_10_CACTA_0137 5187 7314" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12786145..12789074 /note="source:CACAO_M_S_E124255_F302_scaffold_10 1 2931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12789075..12790324 /note="source:scaffold_10_CACTA_0137 7311 8561" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12790394..12791670 /note="source:scaffold_10_CACTA_0137 8555 9837" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12794130..12794161) /note="source:CACAO_M_E5702_F90_scaffold_2 2024 2046" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12794131..12795522 /note="source:scaffold_10_CACTA_0137 9834 11221" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12797104..12798350 /note="source:CACAO_M_E35511_F5_scaffold_5 2259 3495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12797966..12799957) /note="source:scaffold_9_CACTA_0927 13310 15340" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12798817..12801866) /note="source:INTACT697_F302_scaffold_2-int 11770 14846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12800709..12802370 /note="source:INTACT597_F267_scaffold_2-int 9763 11278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12802360..12802573 /note="source:INTACT597_F267_scaffold_2-int 15033 15247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12802778..12803449) /note="source:scaffold_9_CACTA_0927 7176 7854" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12804100..12805173 /note="source:CACAO_M_E35511_F5_scaffold_5 11581 12651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12812897..12815618 /note="source:scaffold_10_CACTA_0137 1 2691" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12816166..12818275 /note="source:scaffold_10_CACTA_0137 3686 5816" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12818272..12819919 /note="source:scaffold_10_CACTA_0137 5733 7385" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12820020..12821178 /note="source:scaffold_10_CACTA_0137 7403 8561" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12821252..12823891 /note="source:scaffold_10_CACTA_0137 8559 11221" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12823876..12826648 /note="source:INTACT132_F12_scaffold_9-int 7460 11664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12826749..12835271 /note="source:CACAO_M_E58894_F15_scaffold_9 2773 11266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12835957..12835980 /note="source:CACAO_M_S_E64023_F13_scaffold_5 16460 16486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12835981..12839157) /note="source:CACAO_M_E73126_F328_scaffold_10 1 3177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12846054..12850024 /note="source:scaffold_10_CACTA_0137 459 4443" /mobile_element_type="transposon:TIR/CACTA" gene 12847068..12850181 /locus_tag="TCM_044043" /note="dbxref CacaoGD:Thecc1EG044043" mRNA join(12847068..12847146,12847271..12847378, 12847511..12847642,12849078..12849194,12849282..12849398, 12849729..12850181) /locus_tag="TCM_044043" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045969t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS join(12847280..12847378,12847511..12847642, 12849078..12849194,12849282..12849398,12849729..12849821) /locus_tag="TCM_044043" /note="paralog of Thecc1EG045969t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19179.1" /translation="MERVAPTPQAPIDRENFAPNFQSFITDLKGVIHREVKMVKTKAN EESTLSLNLGLYPINRTKNTLISYNTTTPWKSKLNILEPAMKKKRGKSKLVAREITSF RLSDERFDLAQIEKHFQMSLDGKEKEFKYLLIERLDGWKIDCKKRATGKVIDMYYTHE ISKKSFRSVKEVMNFILYEVDPRKR" mobile_element 12850047..12851651 /note="source:scaffold_10_CACTA_0137 4556 6159" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12851650..12852146 /note="source:scaffold_10_CACTA_0137 6287 6784" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12852247..12853859 /note="source:scaffold_10_CACTA_0137 6859 8561" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12865058..12868005 /note="source:CACAO_M_E12604_F246_scaffold_3 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12869877..12877963) /note="source:CACAO_M_E73119_F12_scaffold_10 4421 12507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12878191..12882610) /note="source:CACAO_M_E73119_F12_scaffold_10 1 4420" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12888142..12988496) /locus_tag="TCM_044048" /note="dbxref CacaoGD:Thecc1EG044048" mRNA complement(join(12888142..12888200,12907017..12907482, 12907577..12907698,12988158..12988211,12988302..12988496)) /locus_tag="TCM_044048" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023096t1" /note="quality class is medium-utrpoor, express is none, homology is paralog strong, intron is none, protein is utrpoor_complete" mobile_element complement(12890947..12896421) /note="source:CACAO_M_S_E173_F215_scaffold_1 218 5682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12896428..12903422) /note="source:CACAO_M_E73118_F12_scaffold_10 3051 10045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12904557..12906686) /note="source:CACAO_M_E73118_F12_scaffold_10 1 2116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12906687..12906900) /note="source:CACAO_M_E33933_F9_scaffold_4 23581 23795" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(12907685..12907698,12988158..12988211, 12988302..12988449)) /locus_tag="TCM_044048" /note="paralog of Thecc1EG023096t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19180.1" /translation="MSMIMCVLCHDPKLPIEPVTIAAKPRQTFFTPNVDRNLARLSYK LSHFPGAFSSFLSKTSKLAKNVVSYLM" mobile_element 12909748..12911669 /note="source:INTACT212_F171_scaffold_10-int 4528 6449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12912119..12912438 /note="source:CACAO_M_E85440_F98_scaffold_11 2147 2466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12912539..12912597 /note="source:CACAO_M_E5362_F98_scaffold_2 2699 2748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12912598..12912622) /note="source:CACAO_M_E5702_F90_scaffold_2 7061 7154" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12912653..12912929 /note="source:INTACT88_F12_scaffold_4-int 11543 11817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12912914..12913220 /note="source:CACAO_M_E3248_F5_scaffold_1 2831 3140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12913221..12913882) /note="source:CACAO_M_E33282_F13_scaffold_4 11863 12520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12914102..12914367 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2780 3040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12915860..12916134 /note="source:CACAO_M_E3248_F5_scaffold_1 3136 3411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12916679..12916941) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18293 18553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12916906..12919930 /note="source:CACAO_M_E10603_F306_scaffold_2 4812 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12919921..12919985) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18238 18300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12919933..12919983 /note="source:CACAO_M_E3248_F5_scaffold_1 4099 4149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12919986..12922444 /note="source:CACAO_M_E86305_F7_scaffold_15 1 2450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12928764..12928829) /note="source:CACAO_M_E3524_F15_scaffold_1 360 427" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12928826..12932782 /note="source:CACAO_M_E86361_F7_scaffold_15 8628 12582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12932989..12933082) /note="source:CACAO_M_S_E109853_F60_scaffold_9 11829 11919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12933072..12935299 /note="source:scaffold_10_CACTA_0137 1539 3767" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12936117..12937731 /note="source:CACAO_M_E50032_F60_scaffold_7 335 1949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12937691..12938232) /note="source:INTACT95_F143_scaffold_9-int 9754 10296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12937936..12940503 /note="source:INTACT616_F52_scaffold_1-int 380 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12940503..12940746) /note="source:INTACT254_F60_scaffold_3-int 6577 6821" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12940742..12946351) /note="source:CACAO_M_S_E15657_F60_scaffold_2 1381 7047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12946352..12949463) /note="source:CACAO_M_E73106_F247_scaffold_10 1 2915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12949464..12949822) /note="source:CACAO_M_E33213_F12_scaffold_4 10157 10509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12949505..12950202 /note="source:CACAO_M_S_E109853_F60_scaffold_9 12449 13177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12949949..12950556) /note="source:CACAO_M_E47740_F12_scaffold_6 5414 6048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12951812..12954702) /note="source:CACAO_M_E73105_F247_scaffold_10 1 2891" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12954723..12955764) /note="source:CACAO_M_S_E15657_F60_scaffold_2 345 1384" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12955765..12957836) /note="source:CACAO_M_E73101_F15_scaffold_10 723 2794" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12957937..12958658) /note="source:CACAO_M_E73101_F15_scaffold_10 1 722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12958659..12959008 /note="source:CACAO_M_E50032_F60_scaffold_7 1361 1713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12959008..12959505 /note="source:scaffold_10_CACTA_0137 131 622" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12959496..12962139 /note="source:scaffold_10_CACTA_0137 732 3379" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12962203..12962449 /note="source:scaffold_10_CACTA_0137 3402 3653" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12962444..12966859 /note="source:scaffold_10_CACTA_0137 4066 8561" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12966929..12969574 /note="source:scaffold_10_CACTA_0137 8555 11221" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12976360..12978718 /note="source:CACAO_M_S_E66227_F42_scaffold_5 1 2365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12978820..12979680) /note="source:INTACT548_F247_scaffold_9-int 4864 5697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12980597..12981466) /note="source:CACAO_M_E35188_F7_scaffold_5 4715 5584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12981999..12982585 /note="source:CACAO_M_E14428_F42_scaffold_3 2513 3099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12985557..12986976 /note="source:CACAO_M_E59482_F82_scaffold_9 560 1980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12987078..12987842 /note="source:CACAO_M_E49857_F85_scaffold_7 1992 2755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12988090..12988425 /note="source:CACAO_M_E11044_F82_scaffold_2 2983 3323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12989158..12989471 /note="source:CACAO_M_E86216_F281_scaffold_13 1 310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12989890..12990783 /note="source:scaffold_5_CACTA_0601 12383 13278" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12990671..12990775 /note="source:CACAO_M_E44899_F328_scaffold_6 1887 2334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12990776..12991116) /note="source:CACAO_on_E279_scaffold_9 1448 1787" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 12995622..12996752 /note="source:CACAO_M_E49857_F85_scaffold_7 136 1238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12997016..12997400) /note="source:CACAO_M_E35063_F82_scaffold_5 1452 1836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12997501..12997729) /note="source:CACAO_M_E49665_F86_scaffold_7 996 1223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12998059..12998941 /note="source:CACAO_M_E49857_F85_scaffold_7 22999 23879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12998942..13000662) /note="source:CACAO_M_E69186_F33_scaffold_9 169 1893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13000663..13001023 /note="source:CACAO_M_E11639_F86_scaffold_2 1 361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13001218..13003098) /note="source:CACAO_M_E58905_F86_scaffold_9 1 1897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13003099..13003271) /note="source:CACAO_M_E4238_F33_scaffold_2 1 169" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13003665..13006849) /note="source:CACAO_M_E71405_F316_scaffold_10 4798 7988" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13008123..13011049) /note="source:CACAO_M_E73092_F86_scaffold_10 1 2927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13014783..13018342 /note="source:scaffold_10_CACTA_0137 1 3558" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13018356..13020850 /note="source:scaffold_10_CACTA_0137 3675 6211" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13020287..13021110 /note="source:CACAO_M_E69760_F9_scaffold_9 11952 12739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13021208..13022230 /note="source:scaffold_10_CACTA_0137 6200 7307" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13022229..13022456 /note="source:scaffold_10_CACTA_0137 10994 11221" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13024845..13025381) /note="source:scaffold_10_CACTA_0137 8555 9086" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13025451..13026779) /note="source:scaffold_10_CACTA_0137 7302 8561" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13027877..13029331 /note="source:CACAO_M_E69760_F9_scaffold_9 1 1449" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13030855..13038147 /locus_tag="TCM_044056" /note="dbxref CacaoGD:Thecc1EG044056" mRNA join(13030855..13031579,13031738..13031778, 13033011..13033071,13033152..13033254,13033372..13033474, 13033615..13033668,13033753..13033815,13034160..13034209, 13034306..13034381,13035114..13035329,13035409..13035496, 13036259..13036344,13036462..13036569,13036947..13036991, 13037107..13037195,13037329..13037372,13037849..13038147) /locus_tag="TCM_044056" /product="Zinc induced facilitator-like 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29930.m000605.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023670t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8080t8" mRNA join(13031133..13031579,13031738..13031778, 13033011..13033071,13033152..13033254,13033372..13033474, 13033615..13033668,13033753..13033815,13034160..13034209, 13034306..13034381,13035114..13035329,13035409..13035496, 13036259..13036344,13036462..13036569,13036947..13036991, 13037107..13037195,13037329..13037372,13037882..>13037909) /locus_tag="TCM_044056" /product="Zinc induced facilitator-like 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29930.m000605.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023670t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01110.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8080t2; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8080t8" mRNA join(13031133..13031579,13031738..13031778, 13033011..13033071,13033152..13033254,13033372..13033474, 13033615..13033668,13033753..13033815,13034160..13034209, 13034306..13034381,13035114..13035329,13035409..13035496, 13036259..13036344,13036462..13036569,13036947..13036991, 13037066..13037135) /locus_tag="TCM_044056" /product="Zinc induced facilitator-like 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29930.m000605.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023670t2" /inference="similar to AA sequence:Phytozome:GSVIVT01027391001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8090t2; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8080t8" CDS join(13031435..13031579,13031738..13031778, 13033011..13033071,13033152..13033254,13033372..13033474, 13033615..13033668,13033753..13033815,13034160..13034209, 13034306..13034381,13035114..13035329,13035409..13035496, 13036259..13036344,13036462..13036569,13036947..13036991, 13037107..13037195,13037329..13037372,13037849..13037940) /locus_tag="TCM_044056" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG023670t1" /codon_start=1 /product="Zinc induced facilitator-like 1 isoform 1" /protein_id="EOY19181.1" /db_xref="Phytozome:POPTR_0008s01110.1" /db_xref="TAIR:AT5G13750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK81" /translation="MAQEYREPLLKKKYHENCPGCKVDQMKELQRGLPLRQLVSIWIV VLCAALPISSLFPFLYFMIRDFHISKREEDIGYYAGYVGSAFMLGRASTSVLWGIIAD RYGRKPVIIMGTITVVVFNTLFGLSVNFYMAVTTRFLLGSLNGLLGPIKAYAVEIFRE EHQALGLSTVSTSWGIGLIIGPALGGFLAQPAEKYPNIFSKDSLFGRFPYFLPCLAIS LFALGVTIATFWLPETLHKHNDNDRSSDDSYDALEAAPHESSSKEITEEDEGRESTSK QSLLKNWPLMSSIIVYCVFSLHDMAYTEIFSLWAVSPRKFGGLSYSTKDVGEVLAISG FSLLVFQLSVYPTVERILGPVMVSRIASVLTIPLLQSYSYIALLSGFTLSLVLNCASI LKNVLSVSIITGLFILQNRAVDQHQRGAANGIAMTGMSLFKAAGPAGGGALFSWAEKR QDAAFLPGTQMVFFILNIVEAVGVLMTFKPFLAQHRQ" CDS join(13031435..13031579,13031738..13031778, 13033011..13033071,13033152..13033254,13033372..13033474, 13033615..13033668,13033753..13033815,13034160..13034209, 13034306..13034381,13035114..13035329,13035409..13035496, 13036259..13036344,13036462..13036569,13036947..13036991, 13037107..13037195,13037329..13037372,13037882..>13037907) /locus_tag="TCM_044056" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG023670t1" /codon_start=1 /product="Zinc induced facilitator-like 1 isoform 2" /protein_id="EOY19182.1" /db_xref="Phytozome:POPTR_0008s01110.1" /db_xref="TAIR:AT5G13750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK81" /translation="MAQEYREPLLKKKYHENCPGCKVDQMKELQRGLPLRQLVSIWIV VLCAALPISSLFPFLYFMIRDFHISKREEDIGYYAGYVGSAFMLGRASTSVLWGIIAD RYGRKPVIIMGTITVVVFNTLFGLSVNFYMAVTTRFLLGSLNGLLGPIKAYAVEIFRE EHQALGLSTVSTSWGIGLIIGPALGGFLAQPAEKYPNIFSKDSLFGRFPYFLPCLAIS LFALGVTIATFWLPETLHKHNDNDRSSDDSYDALEAAPHESSSKEITEEDEGRESTSK QSLLKNWPLMSSIIVYCVFSLHDMAYTEIFSLWAVSPRKFGGLSYSTKDVGEVLAISG FSLLVFQLSVYPTVERILGPVMVSRIASVLTIPLLQSYSYIALLSGFTLSLVLNCASI LKNVLSVSIITGLFILQNRAVDQHQRGAANGIAMTGMSLFKAAGPAGGGALFSWAEKR QDAAFLPVEAVGVLMT" CDS join(13031435..13031579,13031738..13031778, 13033011..13033071,13033152..13033254,13033372..13033474, 13033615..13033668,13033753..13033815,13034160..13034209, 13034306..13034381,13035114..13035329,13035409..13035496, 13036259..13036344,13036462..13036569,13036947..13036991, 13037066..13037083) /locus_tag="TCM_044056" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG023670t2" /codon_start=1 /product="Zinc induced facilitator-like 1 isoform 3" /protein_id="EOY19183.1" /db_xref="Phytozome:GSVIVT01027391001" /db_xref="TAIR:AT5G13750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK81" /translation="MAQEYREPLLKKKYHENCPGCKVDQMKELQRGLPLRQLVSIWIV VLCAALPISSLFPFLYFMIRDFHISKREEDIGYYAGYVGSAFMLGRASTSVLWGIIAD RYGRKPVIIMGTITVVVFNTLFGLSVNFYMAVTTRFLLGSLNGLLGPIKAYAVEIFRE EHQALGLSTVSTSWGIGLIIGPALGGFLAQPAEKYPNIFSKDSLFGRFPYFLPCLAIS LFALGVTIATFWLPETLHKHNDNDRSSDDSYDALEAAPHESSSKEITEEDEGRESTSK QSLLKNWPLMSSIIVYCVFSLHDMAYTEIFSLWAVSPRKFGGLSYSTKDVGEVLAISG FSLLVFQLSVYPTVERILGPVMVSRIASVLTIPLLQSYSYIALLSGFTLSLVLNCASI LKNVLSVSIITGLFILQNRAVKYIST" mobile_element complement(13041088..13043833) /note="source:CACAO_M_E73089_F74_scaffold_10 2640 5385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13043934..13044662) /note="source:CACAO_M_E73089_F74_scaffold_10 1911 2639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13044763..13046672) /note="source:CACAO_M_E73089_F74_scaffold_10 1 1910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13047795..13047914) /note="source:CACAO_M_E5047_F230_scaffold_2 1 122" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13047951..13048048 /note="source:CACAO_M_E12463_F12_scaffold_3 4641 4738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13047970..13048059) /note="source:CACAO_M_S_E14444_F98_scaffold_2 2005 2094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13048763..13048862 /note="source:CACAO_M_E12463_F12_scaffold_3 4646 4750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13048779..13048907) /note="source:CACAO_M_E427_F230_scaffold_1 1049 1160" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13050776..13055210 /locus_tag="TCM_044057" /note="dbxref CacaoGD:Thecc1EG044057" mRNA join(13050776..13051094,13051213..13051327, 13051429..13051484,13051961..13052008,13052096..13052193, 13053174..13053243,13053358..13053468,13054417..13054504, 13055139..13055210) /locus_tag="TCM_044057" /product="RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021851001" /inference="similar to AA sequence:ricco:29428.m000321" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01024t00002" CDS join(13050996..13051094,13051213..13051327, 13051429..13051484,13051961..13052008,13052096..13052193, 13053174..13053243,13053358..13053468,13054417..13054467) /locus_tag="TCM_044057" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29428.m000321" /codon_start=1 /product="RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1" /protein_id="EOY19184.1" /db_xref="TAIR:AT5G04600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTT9" /translation="MGLKARKALKKTVKKASSHFALSDSKTASADFLPLEGGPSRELP GNKPQQNKATVLYIGRIPHGFYEKEMEAYFQQFGAIKRLRIARNKKTGKSKHFGFIEF ENPQVAEVVADCMHNYLLFEHLLQVHLIPPEHVHPKLWRGFNYKYKPVDYVQIERKRQ NKVRTLEEHKKLVEKILKRDQKRRKMIEAAGIDYECPEIVGSSQPAPKKIKFDED" mRNA join(<13051004..13051094,13051213..13051327, 13051429..13051484,13051961..13052008,13052096..13052193, 13053174..13053243,13053358..13053468,13054417..13054504, 13054584..13054790) /locus_tag="TCM_044057" /product="RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021851001" /inference="similar to AA sequence:ricco:29428.m000321" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01024t00002; inference alignment:Newbler:10:TSA:cgbaB_g01024t00002" CDS join(<13051005..13051094,13051213..13051327, 13051429..13051484,13051961..13052008,13052096..13052193, 13053174..13053243,13053358..13053468,13054417..13054467) /locus_tag="TCM_044057" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29428.m000321" /codon_start=1 /product="RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2" /protein_id="EOY19185.1" /db_xref="TAIR:AT5G04600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTT9" /translation="KARKALKKTVKKASSHFALSDSKTASADFLPLEGGPSRELPGNK PQQNKATVLYIGRIPHGFYEKEMEAYFQQFGAIKRLRIARNKKTGKSKHFGFIEFENP QVAEVVADCMHNYLLFEHLLQVHLIPPEHVHPKLWRGFNYKYKPVDYVQIERKRQNKV RTLEEHKKLVEKILKRDQKRRKMIEAAGIDYECPEIVGSSQPAPKKIKFDED" gene complement(13055797..13056561) /locus_tag="TCM_044060" /note="dbxref CacaoGD:Thecc1EG044060" mRNA complement(13055797..13056561) /locus_tag="TCM_044060" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29475.m000232" /inference="similar to AA sequence:ricco:29475.m000232" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9616t3" CDS complement(13055839..13056309) /locus_tag="TCM_044060" /note="dbxref ricco:29475.m000232" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19186.1" /db_xref="TAIR:AT4G40045.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL35" /translation="MKMLRLVSSLHPQIPSTSPKLSFTYKDASLFPKPQVQVPKYPSR FALFAQNGNKDDLTKEPNKKQEGEENPKGQPNGSINGGDSRNERRSMFNFRLGDLLDP DPDNIVALGLTGLLTWASVQVLWQLFLISVAILLAALKYSFIAALLIFILITLL" mobile_element 13056584..13056660 /note="source:INTACT135F_F90_scaffold_2-int 12858 12942" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13057838..13058056 /note="source:INTACT135F_F90_scaffold_2-int 13028 13258" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13058057..13059178 /note="source:CACAO_M_E69460_F12_scaffold_9 1 1134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13059127..13059898 /note="source:INTACT135F_F90_scaffold_2-int 13263 13997" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13062530..13062797) /note="source:INTACT649F_F368_scaffold_5-int 13 264" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13064274..13064363) /note="source:scaffold_2_CACTA_0262 891 980" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13067867..13068088) /note="source:CACAO_M_E3884_F22_scaffold_1 12936 13132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13068270..13068349) /note="source:scaffold_2_CACTA_0262 5286 5368" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13068283..13068392) /note="source:CACAO_M_E3884_F22_scaffold_1 13011 13129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13072985..13073059) /note="source:scaffold_2_CACTA_0262 3309 3383" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13073905..13074548) /note="source:CACAO_M_E3884_F22_scaffold_1 17240 17847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13074549..13074710 /note="source:INTACT649F_F368_scaffold_5-int 1 170" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13074722..13090592) /note="source:CACAO_M_E73087_F12_scaffold_10 1 15871" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13093431..13093563 /note="source:INTACT649F_F368_scaffold_5-int 14339 14473" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13094289..13094686 /note="source:INTACT649F_F368_scaffold_5-int 772 1188" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13094687..13097548) /note="source:CACAO_M_E4484_F289_scaffold_2 1 2861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13097551..13097933 /note="source:INTACT649F_F368_scaffold_5-int 15309 15691" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13098108..13098794 /note="source:INTACT649F_F368_scaffold_5-int 8915 9607" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13098742..13098843) /note="source:CACAO_M_E3248_F5_scaffold_1 3645 3723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13101914..13103687 /note="source:CACAO_M_S_E15173_F4_scaffold_2 80 1876" /mobile_element_type="retrotransposon:LTR/Copia" gene 13104876..13106223 /locus_tag="TCM_044063" /note="dbxref CacaoGD:Thecc1EG044063" mRNA 13104876..13106223 /locus_tag="TCM_044063" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage" CDS 13105323..13105541 /locus_tag="TCM_044063" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19187.1" /translation="MTLWIKVNVDYEKELVVTTPLREVFVTRYECRACVVQVKVNDTQ ANLILKDMLEFDIIHGMDWQSPNYASVD" mobile_element 13105834..13105896 /note="source:CACAO_M_E59463_F12_scaffold_9 4717 5237" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13105897..13106354) /note="source:CACAO_M_E42514_F40_scaffold_5 15327 15784" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13106993..13108631 /note="source:CACAO_M_S_E99574_F14_scaffold_9 8540 10212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13111574..13112584 /note="source:CACAO_M_E65323_F12_scaffold_9 7737 8682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13112720..13113415 /note="source:CACAO_M_E65323_F12_scaffold_9 2939 3625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13113313..13114557) /note="source:CACAO_M_S_E31635_F14_scaffold_3 1733 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13114743..13115134) /note="source:CACAO_M_S_E64440_F7_scaffold_5 10284 10674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13115121..13115796) /note="source:CACAO_M_E9571_F13_scaffold_2 8618 9267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13115797..13125929) /note="source:CACAO_M_S_E124346_F13_scaffold_10 1 10133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13125865..13125937) /note="source:CACAO_M_E42514_F40_scaffold_5 14441 14511" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13125929..13128305) /note="source:INTACT504_F7_scaffold_1-int 3056 5416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13128613..13129621 /note="source:CACAO_M_E65323_F12_scaffold_9 7737 8682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13129757..13130447 /note="source:CACAO_M_E65323_F12_scaffold_9 2939 3611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13130338..13131246) /note="source:CACAO_M_S_E31635_F14_scaffold_3 2101 3054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13131247..13133945 /note="source:CACAO_M_E5800_F12_scaffold_2 14415 17096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13133940..13134398 /note="source:CACAO_M_E3248_F5_scaffold_1 18379 18837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13134803..13135759) /note="source:scaffold_2_CACTA_0261 419 1376" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13135415..13136343 /note="source:CACAO_M_S_E4413_F3_scaffold_1 17501 18472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13137917..13140279 /note="source:INTACT1793F_F14_scaffold_10-int 1 2370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13140280..13141675) /note="source:CACAO_M_E58601_F7_scaffold_9 4312 5672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13142676..13144871 /note="source:INTACT1793F_F14_scaffold_10-int 2431 4625" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13142986..13144153) /locus_tag="TCM_044066" /note="dbxref CacaoGD:Thecc1EG044066" mRNA complement(join(13142986..13143581,13143662..13144153)) /locus_tag="TCM_044066" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008755t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage" CDS complement(join(13143033..13143581,13143662..13143667)) /locus_tag="TCM_044066" /note="paralog of Thecc1EG008755t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19188.1" /translation="MQEFAVIATDLGSFLKIECEKGEFEFPKNYDPSSVWEIITGKKE KYSSKSNVGLITSPQIRILHYFIAANIHGKSGNFSYISLQDLCLMEHAFSGTPLNLGR FMIERTTRVCRGDKINLPYGNVITYLVQKKGIWRSRYQMDSVKSRDQAFYLGSLPKMG YKLDGKRYVKTPKATSGKEFSFPA" mobile_element 13144866..13146003 /note="source:CACAO_M_S_E31635_F14_scaffold_3 10928 12067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13145997..13147396 /note="source:CACAO_M_E59463_F12_scaffold_9 4778 6178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13147390..13147498 /note="source:INTACT265_F12_scaffold_7-int 12195 12303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13147445..13147507) /note="source:CACAO_M_E3248_F5_scaffold_1 3663 3725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13148564..13149276 /note="source:CACAO_M_E59463_F12_scaffold_9 6817 7530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13149278..13152912 /note="source:INTACT1793F_F14_scaffold_10-int 6343 10004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13152913..13153606 /note="source:CACAO_M_S_E15593_F7_scaffold_2 1 692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13153607..13162337 /note="source:INTACT715_F7_scaffold_5-int 1 8792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13162338..13165200) /note="source:CACAO_M_S_E124331_F15_scaffold_10 1 2863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13165201..13166328 /note="source:INTACT715_F7_scaffold_5-int 1874 3007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13166331..13168625 /note="source:INTACT90_F13_scaffold_4-int 1994 4298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13168615..13168888 /note="source:CACAO_M_E52936_F14_scaffold_8 6140 6410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13169849..13169962 /note="source:INTACT293_F14_scaffold_5-int 11327 11440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13171268..13171508) /note="source:INTACT234_F12_scaffold_9-int 8981 9190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13174326..13176907 /note="source:INTACT146F_F14_scaffold_2-int 3173 5824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13178620..13178909) /note="source:scaffold_4_CACTA_0493 3947 4269" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13179193..13181186 /note="source:INTACT146F_F14_scaffold_2-int 6024 8043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13181186..13182720) /note="source:CACAO_M_E5899_F5_scaffold_2 3030 4559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13183137..13184366 /note="source:INTACT126_F14_scaffold_3-int 6978 8138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13184353..13184469) /note="source:CACAO_M_E35811_F12_scaffold_5 4967 5082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13184364..13184464 /note="source:INTACT65_F13_scaffold_1-int 8910 9010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13186279..13188974) /note="source:CACAO_M_E73087_F12_scaffold_10 7976 10649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13189917..13190748) /note="source:scaffold_4_CACTA_0493 3598 4438" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13190724..13191413 /note="source:CACAO_M_E3248_F5_scaffold_1 3772 4497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13192114..13192792) /note="source:CACAO_M_E11662_F12_scaffold_2 7819 8500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13192889..13195977) /note="source:CACAO_M_E13038_F22_scaffold_3 10683 13665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13196757..13197007 /note="source:scaffold_5_CACTA_0591 15526 15749" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13197008..13200022) /note="source:CACAO_M_S_E124316_F201_scaffold_10 1 3015" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13202028..13202107 /note="source:INTACT263_F12_scaffold_6-int 9843 9919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13204286..13205711 /note="source:INTACT638_F90_scaffold_1-int 1 1439" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13205439..13205751 /note="source:CACAO_M_S_E83601_F14_scaffold_6 1151 1464" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13207538..13220122) /note="source:INTACT124_F12_scaffold_10-int 1 12585" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13221179..13221500) /note="source:CACAO_M_E3248_F5_scaffold_1 3935 4253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13221837..13222696) /note="source:CACAO_M_E3248_F5_scaffold_1 2831 3653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13222681..13222957) /note="source:INTACT88_F12_scaffold_4-int 11543 11817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13223054..13223790 /note="source:CACAO_M_E5899_F5_scaffold_2 21809 22608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13223209..13223881) /note="source:CACAO_M_E3248_F5_scaffold_1 1653 2360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13224247..13226497 /note="source:CACAO_M_S_E5046_F335_scaffold_1 18259 20407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13226494..13226882 /note="source:CACAO_M_E47740_F12_scaffold_6 6336 6721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13227116..13227959) /note="source:CACAO_M_E58728_F12_scaffold_9 222 1076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13227884..13227969 /note="source:INTACT85F_F12_scaffold_2-int 711 798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13227962..13230516) /note="source:CACAO_M_S_E124302_F266_scaffold_10 1 3072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13230517..13232474) /note="source:CACAO_M_S_E102025_F12_scaffold_9 7395 9354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13232475..13234915 /note="source:CACAO_M_E69800_F12_scaffold_9 9703 12149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13234906..13235019 /note="source:INTACT265_F12_scaffold_7-int 14629 14742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13235011..13236310) /note="source:INTACT116_F12_scaffold_7-int 6161 7480" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13236308..13237226 /note="source:CACAO_M_E14347_F12_scaffold_3 14090 15035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13237212..13237252 /note="source:INTACT263_F12_scaffold_6-int 7147 7186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13237221..13237920 /note="source:CACAO_M_S_E32752_F12_scaffold_4 2469 3174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13238703..13239078) /note="source:CACAO_M_E453_F12_scaffold_1 11626 12015" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13238794..13239092 /note="source:INTACT263_F12_scaffold_6-int 8318 8612" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13239285..13240206 /note="source:INTACT263_F12_scaffold_6-int 8906 9928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13240188..13241939 /note="source:CACAO_M_E59463_F12_scaffold_9 5709 7541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13241925..13247775) /note="source:INTACT130_F12_scaffold_9-int 260 6109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13245789..13248079 /note="source:INTACT111_F36_scaffold_10-int 8661 11005" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13249164..13251642 /note="source:scaffold_9_CACTA_0931 15827 18338" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13249833..13251847) /note="source:INTACT1826F_F12_scaffold_15-int 7950 9935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13253974..13254049) /note="source:INTACT170_F12_scaffold_5-int 1179 1253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13256738..13257052) /note="source:CACAO_M_E5899_F5_scaffold_2 19652 19954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13262327..13262950 /note="source:scaffold_3_CACTA_0382 9598 9937" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13262943..13263733 /note="source:scaffold_3_CACTA_0382 10084 10933" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13263734..13266501) /note="source:CACAO_M_E73030_F79_scaffold_10 1 2768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13266502..13267440) /note="source:INTACT1443F_F12_scaffold_9-int 8259 9199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13267412..13267601) /note="source:CACAO_M_E3248_F5_scaffold_1 3932 4096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13268584..13269145 /note="source:CACAO_M_E5899_F5_scaffold_2 21827 22451" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13268736..13269103) /note="source:CACAO_M_E3248_F5_scaffold_1 1964 2358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13269146..13272025 /note="source:INTACT1335F_F384_scaffold_8-int 96 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13272020..13277417 /note="source:CACAO_M_E3259_F15_scaffold_1 3962 9362" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13277409..13279144 /note="source:CACAO_M_E1803_F345_scaffold_1 948 2665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13279145..13286459 /note="source:INTACT224_F176_scaffold_8-int 6646 13916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13286446..13287101 /note="source:INTACT597_F267_scaffold_2-int 11376 12032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13287095..13288287 /note="source:INTACT597_F267_scaffold_2-int 13009 13908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13289525..13290886 /note="source:INTACT597_F267_scaffold_2-int 8071 9303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13290849..13291061) /note="source:INTACT41F_F338_scaffold_1-int 1139 1376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13291649..13291726 /note="source:CACAO_M_E5326_F22_scaffold_2 21712 21790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13291706..13293347) /note="source:INTACT695_F301_scaffold_5-int 2917 4483" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13294297..13294907 /note="source:INTACT597_F267_scaffold_2-int 8079 8695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13295298..13295381) /note="source:scaffold_8_CACTA_0860 5270 5354" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13295543..13298127 /note="source:CACAO_M_S_E14932_F233_scaffold_2 10283 12871" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13298987..13301945) /note="source:INTACT298_F14_scaffold_10-int 3099 6064" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13303727..13303820) /note="source:scaffold_8_CACTA_0860 5136 5233" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13312627..13322855 /note="source:INTACT767_F326_scaffold_6-int 216 9250" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13316685..13318108) /locus_tag="TCM_044080" /note="dbxref CacaoGD:Thecc1EG044080" mRNA complement(13316685..13318108) /locus_tag="TCM_044080" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003305t1" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.75 coverage" CDS complement(13317422..13317751) /locus_tag="TCM_044080" /note="paralog of Thecc1EG003305t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19189.1" /translation="MRHPFWAHSKVLLCLGPHHLTYSFPSCLRATRQALQDLLAKFRT PDLLLSPEGNAFNHFSVNSFISISSKTLKLQLTKHRIKFNDFRSTCKFNFTSVSFYSC VLDMKCF" mobile_element complement(13323654..13324638) /note="source:scaffold_8_CACTA_0859 16525 17518" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13325275..13325801) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6587 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13325934..13326283) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6262 6604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13327086..13327268) /note="source:CACAO_M_S_E64440_F7_scaffold_5 18868 19049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13327271..13327786) /note="source:INTACT597_F267_scaffold_2-int 8137 8661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13327462..13327904 /note="source:INTACT409F_F47_scaffold_4-int 15795 16256" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13328190..13329065 /note="source:INTACT409F_F47_scaffold_4-int 16257 17306" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13329236..13330855) /note="source:CACAO_M_S_E83372_F14_scaffold_6 13927 15505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13329237..13331052 /note="source:CACAO_M_S_E119127_F246_scaffold_9 1471 3307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13331069..13339125) /note="source:CACAO_M_E73015_F273_scaffold_10 1 8057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13339352..13340567 /note="source:CACAO_M_E69460_F12_scaffold_9 7719 8689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13340578..13341046 /note="source:CACAO_M_E11415_F328_scaffold_2 6497 6947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13341455..13342151) /note="source:INTACT542_F243_scaffold_4-int 2961 3697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13343028..13343109 /note="source:CACAO_M_E3626_F245_scaffold_1 2937 3024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13343108..13343176 /note="source:CACAO_M_E3626_F245_scaffold_1 2956 3024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13343109..13343270) /note="source:CACAO_M_E11662_F12_scaffold_2 6870 7027" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13343715..13343857) /note="source:CACAO_M_E23991_F4_scaffold_4 7969 8111" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13343851..13345313 /note="source:INTACT163_F158_scaffold_5-int 9481 10934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13345314..13348636) /note="source:INTACT37_F117_scaffold_2-int 3567 6858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13348635..13351806) /note="source:INTACT37_F117_scaffold_2-int 1723 4903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13351022..13353499 /note="source:CACAO_M_E11662_F12_scaffold_2 4780 7218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13353500..13353660 /note="source:CACAO_M_S_E32752_F12_scaffold_4 2469 2630" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13353656..13353984 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5447 5776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13353980..13355419) /note="source:INTACT39F_F22_scaffold_1-int 3568 4947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13356126..13359056) /note="source:CACAO_M_S_E124255_F302_scaffold_10 1 2931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13359495..13362098) /note="source:CACAO_M_S_E101631_F270_scaffold_9 375 2986" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13362055..13362108) /note="source:CACAO_M_S_E64023_F13_scaffold_5 16472 16525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13365372..13366164 /note="source:CACAO_M_E43831_F302_scaffold_5 185 1076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13365875..13366345 /note="source:scaffold_4_CACTA_0493 3965 4440" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13366796..13367642 /note="source:CACAO_M_E5899_F5_scaffold_2 21829 22691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13368218..13368262) /note="source:INTACT189_F49_scaffold_5-int 17727 17772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13369338..13373655) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 12574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13373640..13373652 /note="source:scaffold_4_CACTA_0493 6642 6653" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13373653..13379644 /note="source:INTACT204_F15_scaffold_7-int 1 6023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13379653..13387652 /note="source:INTACT204_F15_scaffold_7-int 1 6473" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13389916..13394582 /note="source:INTACT1327F_F381_scaffold_8-int 4557 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13397981..13398068) /note="source:INTACT167_F5_scaffold_2-int 981 1059" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13401899..13410873 /locus_tag="TCM_044087" /note="dbxref CacaoGD:Thecc1EG044087" mRNA join(13401899..13402639,13403468..13405271, 13410849..13410873) /locus_tag="TCM_044087" /product="Transcription factor, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022457t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02580.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4250t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4235t1" CDS join(13402179..13402639,13403468..13404701) /locus_tag="TCM_044087" /note="paralog of Thecc1EG022457t1" /codon_start=1 /product="Transcription factor, putative" /protein_id="EOY19190.1" /db_xref="Phytozome:POPTR_0008s02580.1" /db_xref="TAIR:AT5G03680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SY13" /translation="MEMGDQYGLPDLRQFLARGTHFPDTPQPSEPCFTHTHRNMAPLA PYHEAFMVSNGMAVPSSLIRFGHDHFAGASATTTAIAASASSAAASGPCAALFGVEME SSGIGWSLGNIEGGNSRWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMAEEH GYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNQSSLLET NLAQRTLLCQTPNNTMNQENQEFLQEQKLSESLTFSNASEFETSSSENNDDDLSAIAF MMKQSMVEKQKSINESGSSSRVKKGWKTKVKDFVESQMKKLIDSQDMWMERMLKAIDD KERERVSKEEEWRRQEAARFDKEHEFWAKERSWVEARDAALLDVLKKFTAGKGLEVSS SAEAPVITETHSHNKNQQDAINTNRWTEHEVSSLIQLRKSFESRFQDAGYSKESLWEE IEAKMVGLGYERDAVECKEKWDNMQMYFNMTTECYKKRKEDFRSSNYFQLLDSCDGQE NNTNTVKQRDSPSNSYVGTHQQLQDTNSFQIAVHQGDQRLWDRYGLKLGKGKNQQI" mobile_element 13407830..13410896 /note="source:CACAO_M_E3326_F17_scaffold_1 1 3043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13410895..13410973 /note="source:CACAO_M_E5899_F5_scaffold_2 19652 19730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13411496..13411729 /note="source:scaffold_3_CACTA_0382 10413 10647" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13411515..13411764) /note="source:CACAO_M_E24592_F195_scaffold_4 20556 20835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13411849..13412040) /note="source:CACAO_M_E24592_F195_scaffold_4 20384 20575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13412492..13413325 /note="source:CACAO_M_E5899_F5_scaffold_2 21830 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13413352..13417460 /note="source:CACAO_M_E3326_F17_scaffold_1 3039 7138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13418340..13420086 /note="source:CACAO_M_E34540_F17_scaffold_5 7827 9564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13420072..13420161) /note="source:CACAO_M_E24598_F96_scaffold_4 2700 2793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13422854..13424974 /note="source:INTACT591_F264_scaffold_1-int 18888 21024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13424969..13425208 /note="source:INTACT649F_F368_scaffold_5-int 7460 7699" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13425199..13425222 /note="source:CACAO_M_E9395_F12_scaffold_2 2041 2066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13425223..13436261) /note="source:INTACT592_F15_scaffold_10-int 1 11039" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13440285..13440346 /note="source:CACAO_M_E5899_F5_scaffold_2 8903 8963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13440590..13453998) /note="source:INTACT212_F171_scaffold_10-int 1 13409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13454118..13454552) /note="source:CACAO_M_S_E6875_F7_scaffold_2 13980 14410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13454583..13454655) /note="source:scaffold_3_CACTA_0382 1215 1290" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13456017..13456197 /note="source:scaffold_3_CACTA_0382 10027 10205" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13457096..13457556) /note="source:CACAO_M_E5899_F5_scaffold_2 20509 20960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13458112..13458244) /note="source:CACAO_M_E59641_F12_scaffold_9 10398 10524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13458220..13458748 /note="source:CACAO_M_E5899_F5_scaffold_2 9965 10502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13459130..13460835) /note="source:scaffold_3_CACTA_0382 10226 11876" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13466421..13469415) /note="source:CACAO_M_E72982_F15_scaffold_10 1 2969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13472286..13473028) /note="source:scaffold_3_CACTA_0382 11165 11881" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13480276..13490336) /note="source:INTACT771_F78_scaffold_10-int 1 10061" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13483257..13484125 /locus_tag="TCM_044094" /note="dbxref CacaoGD:Thecc1EG044094" mRNA 13483257..13484125 /locus_tag="TCM_044094" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.66 coverage" CDS 13483805..13484044 /locus_tag="TCM_044094" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19191.1" /translation="MRNVGEYNKLGLRNKGKNLKRRRRIQKRILKILNTFVEVRITIS LDKCRLRENVIVICTKKLIVWLLKCMTRMYYKVAV" mobile_element 13498317..13502154 /note="source:INTACT759_F323_scaffold_6-int 1 3829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13499414..13502472) /note="source:CACAO_M_E33441_F85_scaffold_4 5916 8960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13505881..13506174) /note="source:CACAO_M_E58324_F9_scaffold_9 9491 9788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13506517..13507657) /note="source:CACAO_M_E24592_F195_scaffold_4 1451 2632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13508924..13509530) /note="source:INTACT224_F176_scaffold_8-int 13308 13914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13509533..13520520) /note="source:CACAO_M_E43672_F60_scaffold_5 3 13402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13522611..13525107 /note="source:scaffold_1_CACTA_0011 3747 6251" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13524124..13525282) /note="source:INTACT714_F310_scaffold_9-int 11239 12417" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13525493..13525995) /note="source:scaffold_5_CACTA_0596 4499 4986" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13526850..13526923 /note="source:CACAO_M_E5899_F5_scaffold_2 1 73" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13529225..13531837 /note="source:CACAO_M_E52239_F256_scaffold_7 3828 6438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13533458..13536372) /note="source:INTACT1373F_F385_scaffold_8-int 13326 16210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13536372..13537725 /note="source:CACAO_M_E84368_F4_scaffold_10 4505 5872" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13537724..13540914 /note="source:CACAO_M_E84368_F4_scaffold_10 5828 9020" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13540910..13544834 /note="source:CACAO_M_E84368_F4_scaffold_10 9272 13208" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13544835..13545317) /note="source:INTACT7_F3_scaffold_8-int 5160 5642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13545312..13546264) /note="source:INTACT7_F3_scaffold_8-int 4053 5023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13546267..13546782) /note="source:scaffold_3_CACTA_0384 976 1496" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13548517..13548748 /note="source:INTACT224_F176_scaffold_8-int 2388 2616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13548748..13549759) /note="source:CACAO_M_S_E109853_F60_scaffold_9 6154 7229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13550973..13551121) /note="source:CACAO_M_E42395_F3_scaffold_5 4518 4667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13551128..13551699) /note="source:INTACT33_F7_scaffold_5-int 14578 15148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13551691..13551741) /note="source:CACAO_M_E24592_F195_scaffold_4 3833 3884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13551732..13553853 /note="source:CACAO_M_E49885_F60_scaffold_7 4308 6430" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13556334..13559508) /locus_tag="TCM_044103" /note="dbxref CacaoGD:Thecc1EG044103" mRNA complement(join(13556334..13556561,13556804..13556937, 13559497..13559508)) /locus_tag="TCM_044103" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017619t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(13556410..13556561,13556804..13556909)) /locus_tag="TCM_044103" /note="paralog of Thecc1EG017619t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19192.1" /translation="MSRRDDSLHTPHSSSKGSLDSTAKSQWRLDPRSQESAAVVSREE CIRIQQAWIKDKMGKSQEIKEDPEEDPSMCSDQDDDDPNDT" mobile_element complement(13557148..13557684) /note="source:scaffold_3_CACTA_0384 976 1498" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13559413..13559612 /note="source:INTACT224_F176_scaffold_8-int 2385 2553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13559583..13561941 /note="source:CACAO_M_E12058_F3_scaffold_2 4159 6543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13561942..13563558) /note="source:CACAO_M_S_E16543_F3_scaffold_2 6502 8191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13564711..13564921 /note="source:CACAO_M_E44210_F112_scaffold_5 3543 3752" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13564928..13568720 /note="source:CACAO_M_E44210_F112_scaffold_5 5833 9677" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13569678..13572347) /note="source:INTACT39F_F22_scaffold_1-int 4422 7217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13572587..13573271) /note="source:INTACT39F_F22_scaffold_1-int 3568 4227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13573272..13576675) /note="source:CACAO_M_E5899_F5_scaffold_2 15737 19152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13576752..13576792 /note="source:CACAO_M_S_E5046_F335_scaffold_1 2631 2671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13578167..13578835 /note="source:INTACT83_F5_scaffold_9-int 11472 12138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13579016..13579239 /note="source:INTACT83_F5_scaffold_9-int 12432 12652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13582216..13582323) /note="source:CACAO_M_E5899_F5_scaffold_2 21701 21811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13582321..13583390) /note="source:INTACT167_F5_scaffold_2-int 244 1200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13583190..13585228 /note="source:INTACT118_F5_scaffold_9-int 710 2759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13585223..13585285 /note="source:INTACT118_F5_scaffold_9-int 5839 5901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13587204..13589548) /note="source:INTACT167_F5_scaffold_2-int 1 2348" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13590843..13600367 /locus_tag="TCM_044106" /note="dbxref CacaoGD:Thecc1EG044106" mRNA join(13590843..13591512,13600326..13600367) /locus_tag="TCM_044106" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is none, homology is paralog strong, intron is none, protein is utrpoor_complete" CDS 13591293..13591502 /locus_tag="TCM_044106" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19193.1" /translation="MDPLPHNNNPRVLLYWIPIAMVVSMMLADIEESSSSNRAHPRVS LHPITCGLATYTYHKSWPSPRLIAL" mobile_element complement(13592573..13592837) /note="source:INTACT118_F5_scaffold_9-int 3648 3932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13592763..13592848 /note="source:INTACT280_F60_scaffold_5-int 10466 10550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13592942..13593699 /note="source:CACAO_M_E1841_F5_scaffold_1 15889 16665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13593833..13593960 /note="source:INTACT39F_F22_scaffold_1-int 5559 5685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13601362..13611226) /note="source:CACAO_M_S_E18399_F231_scaffold_3 545 10562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13611227..13614050) /note="source:CACAO_M_E72944_F15_scaffold_10 1 2824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13614051..13614604 /note="source:INTACT93F_F345_scaffold_2-int 2090 2638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13616277..13618299 /note="source:CACAO_M_E5326_F22_scaffold_2 21172 22974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13618514..13619536 /note="source:INTACT695_F301_scaffold_5-int 3493 4459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13619930..13622537 /note="source:INTACT224_F176_scaffold_8-int 4845 6416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13623032..13625018 /note="source:CACAO_M_E12221_F121_scaffold_3 1 1965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13625015..13625602 /note="source:CACAO_M_S_E84376_F22_scaffold_6 16105 16708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13625691..13629860 /note="source:CACAO_M_S_E84376_F22_scaffold_6 11736 15935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13630828..13631985 /note="source:CACAO_M_S_E84376_F22_scaffold_6 17125 18352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13632333..13633562 /note="source:CACAO_M_E49857_F85_scaffold_7 17891 18839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13633573..13634286 /note="source:CACAO_M_E14312_F12_scaffold_3 9669 10363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13634287..13638977 /note="source:INTACT74_F134_scaffold_5-int 1 4703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13638978..13641839 /note="source:CACAO_M_E5899_F5_scaffold_2 1722 4557" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13641839..13646582 /note="source:CACAO_M_E294_F134_scaffold_1 10591 15350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13647249..13647327 /note="source:CACAO_M_E3626_F245_scaffold_1 2944 3024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13647911..13648042 /note="source:INTACT74_F134_scaffold_5-int 5462 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13648036..13649463 /note="source:INTACT163_F158_scaffold_5-int 9481 10934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13649354..13649475) /note="source:CACAO_M_S_E38132_F15_scaffold_4 7766 7884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13649464..13654503 /note="source:CACAO_M_E12221_F121_scaffold_3 4342 9316" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13656579..13656787 /note="source:scaffold_3_CACTA_0382 10414 10645" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13657169..13657426) /note="source:scaffold_3_CACTA_0382 11648 11904" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13657420..13657485) /note="source:CACAO_M_E5899_F5_scaffold_2 22625 22691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13660056..13660361) /note="source:scaffold_3_CACTA_0382 11345 11657" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13660365..13662789 /note="source:INTACT139F_F15_scaffold_2-int 1 2554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13660890..13670960) /note="source:CACAO_M_E33228_F15_scaffold_4 1 10093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13672377..13673753 /note="source:CACAO_M_E58715_F13_scaffold_9 3564 4919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13673595..13673771) /note="source:CACAO_M_E3884_F22_scaffold_1 7856 8057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13673756..13674731 /note="source:CACAO_M_E58715_F13_scaffold_9 5942 6940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13674724..13675164 /note="source:CACAO_M_E58715_F13_scaffold_9 8559 9001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13675156..13675495 /note="source:CACAO_M_E58715_F13_scaffold_9 11832 12172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13675498..13678321) /note="source:CACAO_M_E72916_F15_scaffold_10 1 2824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13678323..13680828 /note="source:CACAO_M_E58715_F13_scaffold_9 3563 5177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13680819..13680978 /note="source:CACAO_M_E1841_F5_scaffold_1 9400 9559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13680979..13681379) /note="source:INTACT288_F14_scaffold_2-int 9816 10211" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13681376..13681824 /note="source:INTACT298_F14_scaffold_10-int 12935 13245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13681893..13682921) /note="source:CACAO_M_S_E118676_F14_scaffold_9 10560 11586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13682923..13684262 /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 1313" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13684996..13692609) /note="source:CACAO_M_S_E15589_F14_scaffold_2 176 7805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13692414..13692867 /note="source:CACAO_M_S_E31635_F14_scaffold_3 17935 18388" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13692868..13693683) /note="source:CACAO_M_E3248_F5_scaffold_1 2456 3257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13693666..13693807) /note="source:CACAO_M_E52239_F256_scaffold_7 6358 6438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13693808..13696812) /note="source:INTACT90_F13_scaffold_4-int 1283 4298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13700030..13701176 /note="source:CACAO_M_E870_F22_scaffold_1 2404 3569" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13701232..13701387 /note="source:CACAO_M_E870_F22_scaffold_1 4062 4218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13701372..13702236 /note="source:CACAO_M_E1841_F5_scaffold_1 15798 16664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13702896..13703495 /note="source:INTACT146F_F14_scaffold_2-int 9658 10258" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13703496..13707355 /note="source:INTACT39F_F22_scaffold_1-int 3568 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13707356..13707779 /note="source:CACAO_M_S_E5046_F335_scaffold_1 18849 19262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13707777..13710044 /note="source:INTACT293_F14_scaffold_5-int 8680 11085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13710043..13711234 /note="source:INTACT146F_F14_scaffold_2-int 10474 11664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13711228..13712703 /note="source:INTACT146F_F14_scaffold_2-int 11870 13174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13712616..13712712) /note="source:CACAO_M_E42514_F40_scaffold_5 14544 14636" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13712629..13712755 /note="source:INTACT563_F255_scaffold_10-int 3043 3173" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13714359..13714464 /note="source:CACAO_M_S_E5046_F335_scaffold_1 17886 17991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13714567..13714709 /note="source:CACAO_M_S_E64832_F14_scaffold_5 10030 10173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13714702..13714835 /note="source:CACAO_M_E58819_F24_scaffold_9 3098 3231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13715234..13717152 /note="source:CACAO_M_E3248_F5_scaffold_1 16955 18837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13717647..13718554 /note="source:INTACT453_F4_scaffold_9-int 3021 3992" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13718555..13729563) /note="source:INTACT626_F15_scaffold_10-int 1 11009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13729564..13730264 /note="source:CACAO_M_S_E4534_F4_scaffold_1 6275 6973" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13730258..13731410 /note="source:CACAO_M_S_E31635_F14_scaffold_3 1870 3040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13732428..13733335 /note="source:CACAO_M_S_E4534_F4_scaffold_1 7121 8026" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13733305..13735087 /note="source:INTACT293_F14_scaffold_5-int 8675 10486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13736000..13737705 /note="source:INTACT453_F4_scaffold_9-int 15872 18803" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13737706..13738922 /note="source:CACAO_M_E35511_F5_scaffold_5 9382 10599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13739701..13742489) /note="source:CACAO_M_E72876_F98_scaffold_10 1 2789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13742496..13743045 /note="source:INTACT597_F267_scaffold_2-int 8137 8670" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13743601..13754337) /note="source:CACAO_M_E72875_F15_scaffold_10 1 10737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13754714..13754990) /note="source:CACAO_M_E35511_F5_scaffold_5 10325 10600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13754993..13755333) /note="source:scaffold_5_CACTA_0591 16243 16582" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13755314..13755408) /note="source:CACAO_M_E24592_F195_scaffold_4 10915 11006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13757246..13758105) /note="source:scaffold_5_CACTA_0591 10058 10909" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13758104..13758757) /note="source:scaffold_5_CACTA_0591 15592 16247" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13759848..13782869) /note="source:CACAO_M_E72867_F9_scaffold_10 1 23022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13782898..13782981) /note="source:INTACT224_F176_scaffold_8-int 921 1004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13784228..13784959 /note="source:CACAO_M_E42395_F3_scaffold_5 1045 1774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13785691..13786266) /note="source:INTACT597_F267_scaffold_2-int 8094 8663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13788356..13791345) /note="source:CACAO_M_E72864_F7_scaffold_10 1 2990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13791346..13791725) /note="source:INTACT597_F267_scaffold_2-int 5756 6135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13793450..13793544 /note="source:CACAO_M_E43672_F60_scaffold_5 16523 16614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13793528..13793642 /note="source:CACAO_M_E43672_F60_scaffold_5 16913 17023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13795881..13806916) /note="source:scaffold_10_CACTA_0134 1 10666" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13806101..13808684) /note="source:CACAO_M_E58324_F9_scaffold_9 7669 10224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13808685..13811397 /note="source:CACAO_M_S_E52921_F60_scaffold_5 2016 4788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13811382..13811487) /note="source:CACAO_M_E5899_F5_scaffold_2 22598 22709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13813558..13813989 /note="source:CACAO_M_E43672_F60_scaffold_5 15742 16174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13813985..13814810 /note="source:INTACT184_F164_scaffold_4-int 7984 8798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13814811..13817671) /note="source:CACAO_M_E72850_F230_scaffold_10 1 2861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13817672..13819773) /note="source:INTACT155_F44_scaffold_4-int 1 2146" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13819776..13820167 /note="source:CACAO_M_S_E52921_F60_scaffold_5 5208 5601" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13823559..13825607 /note="source:CACAO_M_E43672_F60_scaffold_5 17042 19093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13825608..13826671) /note="source:CACAO_M_E65182_F15_scaffold_9 1773 2836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13826772..13836470) /note="source:CACAO_M_E35955_F15_scaffold_5 1 9726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13836471..13836913 /note="source:CACAO_M_E43672_F60_scaffold_5 19113 19557" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13837424..13841755) /note="source:CACAO_LINE_E_32_scaffold_10 1 4332" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(13843613..13844825) /note="source:scaffold_10_CACTA_0134 7365 8583" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13844828..13845696) /note="source:scaffold_10_CACTA_0134 9032 9907" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13845795..13846069) /note="source:scaffold_8_CACTA_0859 1040 1305" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13858296..13858431) /note="source:CACAO_M_E11415_F328_scaffold_2 6342 6479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13858320..13858437 /note="source:INTACT212_F171_scaffold_10-int 10627 10744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13858428..13858629 /note="source:INTACT162_F157_scaffold_6-int 8392 8592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13858630..13863784) /note="source:CACAO_M_E10479_F245_scaffold_2 4369 9481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13863785..13865619 /note="source:CACAO_M_S_E14444_F98_scaffold_2 2 1837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13865614..13865755) /note="source:CACAO_M_E5000_F96_scaffold_2 7646 7774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13865727..13866336 /note="source:CACAO_on_S_E58_scaffold_2 7704 8313" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(13866327..13867731) /note="source:INTACT415F_F22_scaffold_4-int 1203 2593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13868777..13869838) /note="source:CACAO_M_E69038_F143_scaffold_9 1932 2996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13871074..13872355) /note="source:CACAO_M_S_E14444_F98_scaffold_2 2 1329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13872357..13872589) /note="source:CACAO_M_E57120_F143_scaffold_8 1676 1907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13872627..13874369) /note="source:CACAO_M_E214_F143_scaffold_1 1 1727" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13874370..13874655 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2068 2365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13875013..13875135) /note="source:CACAO_M_S_E14849_F156_scaffold_2 698 812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13875178..13875303 /note="source:scaffold_2_CACTA_0262 16697 16857" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13878324..13878366) /note="source:CACAO_M_E57763_F96_scaffold_9 706 748" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13883293..13885736 /locus_tag="TCM_044134" /note="dbxref CacaoGD:Thecc1EG044134" mRNA 13883293..13885736 /locus_tag="TCM_044134" /product="Cytochrome P450 77A3" /inference="alignment:exonerate-protein:2:frave:gene23618" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030188t1" /inference="similar to AA sequence:frave:gene23618" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03662t00001" CDS 13883867..13885417 /locus_tag="TCM_044134" /note="dbxref frave:gene23618; paralog of Thecc1EG030188t1" /codon_start=1 /product="Cytochrome P450 77A3" /protein_id="EOY19194.1" /db_xref="TAIR:AT5G04660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48928" /translation="MATSSYHFTSYSFSSNSHLFFTLVAFVLSCLIFFLSRKSKSKRL NLPPGPPGWPVVGNLFQAARSGKPFFEYVEDLRKKYGPIFTLRMGTRTMIILSDAKLC HEAFIEKGALLASRPRENPTRNIFSCNKFTVNAAVYGPVWRSLRRNMVQNMLSSSRLK EFRSTRQHAMDKLIDRLRAEAEANKGVVSVLKNARFAVFCILLGMCFGIEMDEETVEK MDQVMKTVLITLDPRIDDYLPILSPFFSKQRKRALQVRKEQVEYIVPFIEKRREALLN PGSDKSAMSFSYLDTLFDLKVEGRKSAPSNSELVTLCSEFLNGGTDTTATALEWGIAQ LIENPDVQSKLYDEIKWTVGDRKVDEFDVDKMKYLQATVKELLRRHPPTYFSLTHAAT EPATLGGFDIPTDANLEIFLPGISEDPKIWSNPEKFDPDRFFSEKEAADITGVKGVKM MPFGVGRRICPGLGMATVHVHLMLARMVQEFEWTAYPPNSKMDFSGKLEFTVVMKNTL KAMIKPRG" gene complement(13895204..13899167) /locus_tag="TCM_044136" /note="dbxref CacaoGD:Thecc1EG044136" mRNA complement(join(13895204..13895575,13895698..13895818, 13898979..13899167)) /locus_tag="TCM_044136" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(13895491..13895575,13895698..13895818, 13898979..13899003)) /locus_tag="TCM_044136" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19195.1" /translation="MPPPMDHLGYAVNGFTIGLNFVILLDECILSDDKCERYDKGYRI VPNGSCPCLLALSCHYDVKAYDLSCTSLDRLC" mobile_element complement(13897302..13898831) /note="source:CACAO_M_S_E84261_F4_scaffold_6 99 1633" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13898828..13899082 /note="source:CACAO_M_S_E84261_F4_scaffold_6 1606 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13900280..13904578 /note="source:CACAO_M_E12058_F3_scaffold_2 1 4251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13904579..13906924) /note="source:CACAO_M_E24592_F195_scaffold_4 1515 3873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13906925..13909404) /note="source:CACAO_M_E34534_F369_scaffold_5 1 2699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13909405..13909492 /note="source:CACAO_M_E11054_F12_scaffold_2 13450 13515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13909468..13912299) /note="source:INTACT7_F3_scaffold_8-int 1127 3965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13912780..13913792) /note="source:INTACT714_F310_scaffold_9-int 6222 7237" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13915782..13915941) /note="source:CACAO_M_E58324_F9_scaffold_9 22681 22792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13918682..13919805 /note="source:CACAO_M_E58324_F9_scaffold_9 8258 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13919806..13922968) /note="source:INTACT714_F310_scaffold_9-int 3084 6226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13922970..13924985) /note="source:CACAO_M_E50636_F369_scaffold_7 673 2741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13924973..13925431 /note="source:CACAO_M_E22484_F328_scaffold_3 13157 13615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13925417..13925896 /note="source:CACAO_M_E22484_F328_scaffold_3 13157 13615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13925882..13926326 /note="source:CACAO_M_E22484_F328_scaffold_3 13157 13615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13926293..13926790) /note="source:scaffold_9_CACTA_0931 16473 16968" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13926777..13927227 /note="source:CACAO_M_E22484_F328_scaffold_3 13157 13689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13927199..13927677) /note="source:scaffold_9_CACTA_0931 16475 16970" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13927666..13928124 /note="source:CACAO_M_E22484_F328_scaffold_3 13157 13615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13928091..13928109) /note="source:scaffold_9_CACTA_0931 16849 16968" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13928110..13928577 /note="source:CACAO_M_E22484_F328_scaffold_3 13157 13606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13928559..13928978 /note="source:CACAO_M_E22484_F328_scaffold_3 13163 13606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13928957..13929420 /note="source:CACAO_M_E22484_F328_scaffold_3 13160 13606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13929421..13929482) /note="source:scaffold_9_CACTA_0931 16426 16848" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13929713..13930012) /note="source:CACAO_M_E50636_F369_scaffold_7 625 907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13929915..13930279 /note="source:CACAO_M_E22484_F328_scaffold_3 13160 13503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13930380..13930437 /note="source:CACAO_M_E22484_F328_scaffold_3 13546 13606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13930416..13930795 /note="source:CACAO_M_E22484_F328_scaffold_3 13160 13518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13930438..13930513) /note="source:scaffold_9_CACTA_0931 16426 16541" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13930896..13930936 /note="source:CACAO_M_E22484_F328_scaffold_3 13563 13606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13931334..13931774 /note="source:CACAO_M_E22484_F328_scaffold_3 13160 13606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13931753..13932167) /note="source:CACAO_M_E50636_F369_scaffold_7 673 1083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13931775..13931836) /note="source:scaffold_9_CACTA_0931 16439 16947" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13932136..13932592 /note="source:CACAO_M_E22484_F328_scaffold_3 13157 13615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13932559..13932697) /note="source:CACAO_M_E59093_F12_scaffold_9 13610 13735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13932578..13933013 /note="source:CACAO_M_E22484_F328_scaffold_3 13157 13615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13932982..13933458 /note="source:CACAO_M_E22484_F328_scaffold_3 13157 13615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13933425..13933443) /note="source:scaffold_9_CACTA_0931 16852 16968" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13933444..13933890 /note="source:CACAO_M_E22484_F328_scaffold_3 13157 13606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13933869..13934323 /note="source:CACAO_M_E22484_F328_scaffold_3 13160 13615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13933891..13933952) /note="source:scaffold_9_CACTA_0931 16439 16851" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13934309..13935413 /note="source:CACAO_M_E22484_F328_scaffold_3 13157 14269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13935399..13937796) /note="source:INTACT714_F310_scaffold_9-int 659 3088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13939369..13939981) /note="source:scaffold_8_CACTA_0859 494 1092" /mobile_element_type="transposon:TIR/CACTA" gene complement(13940913..13947889) /locus_tag="TCM_044140" /note="dbxref CacaoGD:Thecc1EG044140" mRNA complement(join(13940913..13941011,13941143..13941801, 13946169..13946266,13947241..13947889)) /locus_tag="TCM_044140" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034700001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005426t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24160.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4303t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4303t1" mRNA complement(join(13941053..13941801,13946169..13946266, 13947241..13947845)) /locus_tag="TCM_044140" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034700001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005426t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24160.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09223t00001; alternateUTRof:Thecc1EG044140t1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9291t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4303t1" CDS complement(join(13941372..13941801,13946169..13946266, 13947241..13947399)) /locus_tag="TCM_044140" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005426t1" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY19196.1" /db_xref="Phytozome:POPTR_0010s24160.1" /translation="MISAGINLVMTVIGFTVSTMFIVFVCTRLVCARIQLNASRRSFP VASRSDLSILERGFHGLEPVVVANFPTKKYSDECFLATEDAQCTVCLSEYHSEDVLRI LPYCGHSFHITCIDIWLQQHSTCPVCRMSLREFPEKKRLMQPLFSSAIRSHFGMESFN THSCNCLLRGHGFPSRAHDNGGMGPIQENSFASGGNGAEVGENMSQIAEGDQAIKDSR SKRVESPSNP" CDS complement(join(13941372..13941801,13946169..13946266, 13947241..13947399)) /locus_tag="TCM_044140" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005426t1" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY19197.1" /db_xref="Phytozome:POPTR_0010s24160.1" /translation="MISAGINLVMTVIGFTVSTMFIVFVCTRLVCARIQLNASRRSFP VASRSDLSILERGFHGLEPVVVANFPTKKYSDECFLATEDAQCTVCLSEYHSEDVLRI LPYCGHSFHITCIDIWLQQHSTCPVCRMSLREFPEKKRLMQPLFSSAIRSHFGMESFN THSCNCLLRGHGFPSRAHDNGGMGPIQENSFASGGNGAEVGENMSQIAEGDQAIKDSR SKRVESPSNP" mobile_element complement(13956287..13959598) /note="source:CACAO_M_E84925_F82_scaffold_10 1 3308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13959599..13960661 /note="source:CACAO_M_E44907_F15_scaffold_6 2041 3103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13961444..13961547) /note="source:INTACT642F_F365_scaffold_5-int 879 973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13963608..13964240) /note="source:INTACT642F_F365_scaffold_5-int 224 868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13964241..13964358 /note="source:CACAO_M_E11165_F323_scaffold_2 1 117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13964347..13965036 /note="source:CACAO_M_E56246_F323_scaffold_8 343 1032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13964359..13964380 /note="source:scaffold_7_CACTA_0789 13923 14052" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13965138..13967550) /note="source:CACAO_M_E43944_F323_scaffold_5 1 2412" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13967452..13967566) /note="source:INTACT261_F189_scaffold_2-int 6132 6243" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13967531..13967777) /note="source:INTACT642F_F365_scaffold_5-int 1 245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13974294..13974384) /note="source:INTACT19F_F94_scaffold_1-int 14253 14343" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13976409..13976489 /note="source:INTACT261_F189_scaffold_2-int 11940 12016" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13978323..13981231 /note="source:CACAO_on_E565_scaffold_5 3059 5929" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 13981922..13981990 /note="source:INTACT261_F189_scaffold_2-int 215 287" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13983311..13983401) /note="source:INTACT19F_F94_scaffold_1-int 14253 14343" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13985425..13985521 /note="source:INTACT261_F189_scaffold_2-int 11940 12035" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13986620..13986721) /note="source:INTACT19F_F94_scaffold_1-int 14261 14343" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13987780..13988474 /note="source:INTACT597_F267_scaffold_2-int 7374 8052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13989048..13989689 /note="source:CACAO_M_E1841_F5_scaffold_1 21987 22402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13989690..13990055 /note="source:scaffold_4_CACTA_0493 3829 4210" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13990056..13990936 /note="source:CACAO_M_E1841_F5_scaffold_1 22403 22974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13990932..13991654 /note="source:CACAO_M_E1841_F5_scaffold_1 25802 26505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13991757..13994692 /note="source:INTACT597_F267_scaffold_2-int 9762 15248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13994900..13995564 /note="source:INTACT597_F267_scaffold_2-int 11848 12519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13996288..13996755 /note="source:CACAO_M_E1841_F5_scaffold_1 21987 22418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13996756..13997359 /note="source:scaffold_4_CACTA_0493 3829 4440" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13997360..13997960 /note="source:CACAO_M_E1841_F5_scaffold_1 22419 22974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13997956..13998635 /note="source:CACAO_M_E1841_F5_scaffold_1 25802 26503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14002838..14003469) /note="source:CACAO_M_E11098_F15_scaffold_2 14699 15305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14003476..14003529) /note="source:CACAO_M_E35511_F5_scaffold_5 13614 13668" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14003489..14004380) /note="source:scaffold_4_CACTA_0493 746 1625" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14004381..14007287) /note="source:CACAO_M_E72811_F15_scaffold_10 1 5728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14007943..14008167 /note="source:CACAO_M_E24592_F195_scaffold_4 1 231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14008285..14014511) /note="source:INTACT224_F176_scaffold_8-int 3100 12269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14014512..14015930 /note="source:CACAO_M_E1841_F5_scaffold_1 9632 10955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14016469..14017324) /note="source:scaffold_5_CACTA_0591 10060 10899" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14017306..14018273) /note="source:scaffold_4_CACTA_0493 354 1298" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14018458..14018686 /note="source:CACAO_M_E24592_F195_scaffold_4 3 231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14018803..14019565) /note="source:CACAO_M_E1841_F5_scaffold_1 3109 3862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14023376..14023614 /note="source:INTACT261_F189_scaffold_2-int 11820 12037" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14025171..14025216) /note="source:scaffold_9_CACTA_0929 8751 8796" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14027608..14029530 /note="source:INTACT597_F267_scaffold_2-int 13009 14932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14029848..14029905) /note="source:INTACT213F_F15_scaffold_3-int 8444 8500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14030380..14034351) /note="source:INTACT329_F199_scaffold_2-int 2442 6518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14034529..14035493) /note="source:INTACT329_F199_scaffold_2-int 1244 2212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14035744..14035788 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18754 18797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14035822..14036476 /note="source:CACAO_M_E49108_F15_scaffold_6 1 655" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14035865..14041686 /locus_tag="TCM_044148" /note="dbxref CacaoGD:Thecc1EG044148" mRNA join(14035865..14035931,14039869..14039997, 14040296..14040567,14041077..14041686) /locus_tag="TCM_044148" /product="Gag protease polyprotein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017418t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" CDS join(14039925..14039997,14040296..14040567, 14041077..14041484) /locus_tag="TCM_044148" /note="paralog of Thecc1EG017418t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY19198.1" /translation="MSVNRDVAAIVMGLREVSGRDNSIAPAAEQADSPPHPPPPPPPT GIPTMPTEAAQALAAFFTAMAGGAPTGQVLPIVPPVTPLVPPPVQDVSISKKLKETRQ LGCVSFTGELDATPVKRGKDSAISGSTTSVSVTSPRPPFPPSQQRPSRFSRSAMTGSG KSFGGSDRCRNCGNYHSGLCREPTRCFQCGQTGHIRSNCPRLGRATVVASSSPARTDI QRRDSSGLPPRQGVAIRSGVESNTPAHPPSRP" mobile_element complement(14041056..14041687) /note="source:CACAO_M_E86338_F15_scaffold_15 6485 7116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14041788..14042794 /note="source:CACAO_M_E5390_F15_scaffold_2 4404 5410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14042895..14043417 /note="source:INTACT139F_F15_scaffold_2-int 5378 5900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14043692..14045024 /note="source:CACAO_M_E23859_F15_scaffold_4 6549 7880" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14045125..14046055 /note="source:INTACT139F_F15_scaffold_2-int 7517 8448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14046506..14048398) /note="source:CACAO_M_E33870_F15_scaffold_4 1 1893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14048201..14048422 /note="source:INTACT230_F178_scaffold_3-int 12874 13091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14048471..14048504) /note="source:CACAO_M_E70891_F369_scaffold_10 8168 8201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14048516..14048621) /note="source:CACAO_M_E70891_F369_scaffold_10 7908 8015" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14050031..14050303 /note="source:CACAO_M_S_E6875_F7_scaffold_2 6402 6662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14057367..14057794 /note="source:INTACT329_F199_scaffold_2-int 621 1047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14057965..14058951 /note="source:CACAO_M_E47740_F12_scaffold_6 5726 6719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14062136..14065084) /note="source:CACAO_M_E72799_F134_scaffold_10 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14065233..14065320) /note="source:CACAO_M_E22186_F143_scaffold_3 9953 10038" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14065437..14070771) /note="source:CACAO_M_E57269_F15_scaffold_8 248 9334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14070773..14076108) /note="source:CACAO_M_E41928_F52_scaffold_5 1 5472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14077401..14080389) /note="source:CACAO_M_S_E124012_F7_scaffold_10 1 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14085878..14085964 /note="source:CACAO_M_E84368_F4_scaffold_10 4502 5236" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14085965..14087108 /note="source:scaffold_8_CACTA_0859 494 1628" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14087109..14087172 /note="source:CACAO_M_E84368_F4_scaffold_10 5237 5799" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14087169..14087616 /note="source:CACAO_M_E84368_F4_scaffold_10 5729 6173" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14087617..14090130) /note="source:CACAO_M_E72797_F344_scaffold_10 1 2501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14090131..14091603 /note="source:CACAO_M_E84368_F4_scaffold_10 6182 7674" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14091601..14091972 /note="source:CACAO_M_E84368_F4_scaffold_10 5771 6138" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14093797..14094839 /note="source:CACAO_M_E42395_F3_scaffold_5 19117 20162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14094839..14095351 /note="source:CACAO_M_E42395_F3_scaffold_5 1260 1774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14095563..14095896 /note="source:CACAO_M_E84368_F4_scaffold_10 4502 4836" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14097731..14097809 /note="source:CACAO_M_E23991_F4_scaffold_4 14455 14543" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14106432..14106506 /note="source:INTACT93F_F345_scaffold_2-int 16850 16921" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14108295..14110749) /locus_tag="TCM_044155" /note="dbxref CacaoGD:Thecc1EG044155" mRNA complement(join(14108295..14109564,14110647..14110749)) /locus_tag="TCM_044155" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene23621" /inference="similar to AA sequence:Phytozome:POPTR_0010s24190.1" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc9930t1" CDS complement(join(14108931..14109564,14110647..14110654)) /locus_tag="TCM_044155" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19199.1" /db_xref="Phytozome:POPTR_0010s24190.1" /translation="MRRHRYTPKLHNFSPREDHMATMDINHCEMQRPEGYPSDEQDLG DMSSIVSDMERSPLFGGDNDLSLLERGLYRRTYSDMGDNHHRIQESAKRLGKSFDPRV LVLLEFFGEFYVRSQELLKQIFPGLRNEFIEFFKKVGTVLAKVKSNQVKVKTMQRSLS LGSPLMPSKEDESSLRLERFRIRTVNIGDVQEGGQSSQGGQGGQGGTKPAGSK" mobile_element complement(14110761..14113421) /note="source:CACAO_M_E72795_F345_scaffold_10 1 2661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14114210..14114358) /note="source:INTACT686_F300_scaffold_3-int 1477 1637" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14114359..14116211) /note="source:CACAO_M_E72794_F4_scaffold_10 1 1853" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14116924..14117237) /note="source:CACAO_M_E23991_F4_scaffold_4 3135 3447" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14117562..14117643) /note="source:CACAO_M_E23991_F4_scaffold_4 16670 16750" /mobile_element_type="retrotransposon:LTR/Copia" gene 14117748..14126800 /locus_tag="TCM_044157" /note="dbxref CacaoGD:Thecc1EG044157" mRNA join(14117748..14120408,14120564..14121440, 14121531..14124508,14126519..14126800) /locus_tag="TCM_044157" /product="Retrotransposon, unclassified-like protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040846.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016761t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040846" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" gene 14117754..14120358 /locus_tag="TCM_044158" /note="dbxref CacaoGD:Thecc1EG044158" mRNA 14117754..14120358 /locus_tag="TCM_044158" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS 14117827..14120319 /locus_tag="TCM_044158" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19201.1" /translation="MAVGRPPDPLPTLPPVATPSMLQSGATPNALATENSKPSLSHGH TQAPVSPRTQKKSFLAVAAGEKSSLIPLDREPFWYKDRPAASFFDDEISTLAQPFKFS MVGKFSRMLRMQEIRVAFKGIGLIGAYEIRWLDYKHILIQLSNEHDLNRIWLKQVWFI SNQKMRVFKWSPEFQPEKESSMVPVWISFPNLKAHLYEKSALSAIVKTVGRPLMVDEA TANGTRPSVARVCVEFDCQQPPIDQVWIVTRNRQSGSVMGGYMQKVEFARLSEFCTHC SHVGHGVSSCMVIGNRPEKNKQPMGGKKQLKKEDKDRTNARKGDLKPQEEKETEPIQA EQQKQSTRWQVMARPGPSSAKGTRGEELVLNAQKKVQVQLSNRFEAVGLMDDAGNEKQ GQTECVNSDIMGKQFFLSEQYGEKKIREGKVVQIVEKEDDWRSQHAAGELPETSAREE ISSTRSPVVERVNSSMHIPDNIFKGKGPQQVMVGTHQVERKILDDLSGTKEQEKGEGT RNATQAAMGESLRIDAVLNARTANTTGDPVNSRRDDNPGIRRSTYATMEESWKTGEDT NDSVAKDGDFDHVQWAIEAGHVSFRKAKEKKHRKLEDQLSVTAMHGDGQMISEVRQSF GRMLAEDSQVGSKEIASSTASIHGGLVEGSGENNQEMSHPENKSALSPHGRQQLGSNS RLEWQQSDSRSSYNPCNRVSVEAPRGAEILKNSGENSQEVSQPGNEQELSPDDFLQHS TIHSKERAIQANLIAKDVEPIPHRVVMLDEKEDTDYGLCGFNKEPSMVPSLENFQLRV QQISGSERHQEKPSTGINQSRDPSQDFHENKQ" CDS join(14120303..14120408,14120564..14121440, 14121531..14124508,14126519..14126664) /locus_tag="TCM_044157" /note="paralog of Thecc1EG016761t1" /codon_start=1 /product="Retrotransposon, unclassified-like protein" /protein_id="EOY19200.1" /db_xref="Phytozome:PGSC0003DMP400040846" /db_xref="TAIR:AT4G29090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XCU0" /translation="MRTSSEIHPLVARRRKSDSDISYSPSKDSSLEKDEKPMVHASKL EYIRRKLGFTGAVSNCSQKIWMFWAEEVGCTVQRDHHQCLHVRIAFPWLPFSFQTSFI YAKCTKTERRHLWDCLRNVATDMQEPWLVGGDFNTILSREERLFGAEPNAGSMEEFAT ALFDCGLMDAGFEGNKFTWTNTHMFQRLDRVVYNMEWASSFSHTRIHHLNRDGFDHCP LLISCCNFSLQRPSSFRFLHAWVKHHGFLNFVANNWRQTIYSTGLMAFWNKQQRLKKS LKGWNKDVFGDIFSNLRAAEKTAEEKELTYQHDSSVFNRTQLQYAYAKLNNQMQKKRV RNSIFKIQDSEGTLMEEPGLIESSAVEFFENLLKAENYDLSRFKAEFIPQMLSDADNN LLCAEPQLQEVKDAVFAIDKDSVVGPDGFSSFFYQQCWPIIAEDLLAAVRDFFKGAVF PRGVTSTTLVLLAKKPDAATWSDFRPISLCTILNKIVTKLLANRLSKVLPSLISENQS GFVSGRLINDNILLAQELIGKIDYKARGGNVVLKLDMMKAYDRLNWDFLILVLERFGF NDMWIDMIRRCITNCWFSVLINGHSAGYFKSERGLRQGDSISPMLFILAAEYLSRGIN ELFSRYISLHYHSGCSLNISHLAFADDIMIFTNGSKSVLEKILEFLQEYEQISGQRVN HQKSCFVTANNMPSSRRQIISQTIGFLHKTLPITYLGAPLFKGPKKVMLFDSLINKIR ERITGWENKILSPGGRITLLRSVLSSMPIYLLQVLKPPACVIQKIERLFNSFLWGSSM DSTRIHWTAWHNITFPSSEGGLGIRSLKDSFDAFSAKLWWRFDTCQSLWVRYMRLKYC TGQIHHNIAPKPHDSATWKPLLAGRATASQQIRWRIGKGDIFFWHDAWMGDEPLVNSF PSFSQSMMKVNYFFNDDAWDVDKLKTFIPNAIVEEILKIPISREKEDIAYWALTANGD FSIKSAWELLRQRKQVNLVGQLIWHKSIPLTVSFFLWRTLHNWLPVEVRMKAKGIQLA SKCLCCKSEESLLHVLWESPVAQQVWNYFSKFFQIYVHNPQNILQILNSWYYSGDFTK PGHIRTLILLFIFWFVWVERNDAKHRDLGMYPDRIIWRIMKILRKLFQGGLLCKWQWK GDLDIAIHWGFNFAQERQARPKIINWIKPLIGELKLNVDGSSKDEFQNAAGGGVLRDH TGNLIFGFSENFGYQNSLQAELLALHRGLCLCMEYNVSRVWIEVDAQVVIQMIQNHHK GSYKIQYLLESIRKCLQVISVRISHIHREGNQAADFLSKHGHTHQNLHVFTEAQGELR GRTLVNRVEHPRCLPELRPGSKPGLDLEPESFYGFKAIVHSLPRTFRA" gene complement(14126269..14135334) /locus_tag="TCM_044159" /note="dbxref CacaoGD:Thecc1EG044159" mRNA complement(join(14126269..14128289,14132532..14132883, 14133271..14133704,14133859..14133976,14135009..14135113)) /locus_tag="TCM_044159" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02540.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02540.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b042601t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc49t4" mRNA complement(join(14126269..14128289,14132532..14132883, 14133271..14133704,14133859..14133976,14134275..14134356, 14134500..14134852)) /locus_tag="TCM_044159" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02540.1" /inference="similar to AA sequence:Phytozome:GSVIVT01034734001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc49t4" mRNA complement(join(14126327..14128289,14132532..14132653, 14132786..14132883,14133271..14133704,14133859..14133976, 14135009..14135334)) /locus_tag="TCM_044159" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02540.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02540.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc49t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc49t4" mRNA complement(join(14126830..14128289,14132532..14132653, 14132786..14132883,14133271..14133704,14133859..14133976, 14135009..14135113)) /locus_tag="TCM_044159" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s02540.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02540.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4307t2; alternateUTRof:Thecc1EG044159t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc49t4" CDS complement(join(14127099..14128289,14132532..14132653, 14132786..14132883,14133271..14133704,14133859..14133976, 14135009..14135043)) /locus_tag="TCM_044159" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY19203.1" /db_xref="Phytozome:POPTR_0008s02540.1" /db_xref="TAIR:AT3G52240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL30" /translation="MHNSDQVKQDQRTTCNVEDSTMTIEFLRARLLSERSVSKSARQR VDELAKRVAELEKQLKFVSVQRRRAEKATADVLAILENNGVSDISEELDSSSDQDAPF ESNINNGSTKEEESSVTSKVRQKESEELSGSEFDCSSASGRSLSWKGRKSASHSPERY KDKLVRSRNSFASISFSSRKHRQGKSCRQIRRRESRSVAEELKSDNIMVDPQVKGLEN SSEVNANHSTGEKDMEKALEHQAQLIVHYEAMERAQREWEEKFREKNSSSPDSCDPGN HSDVTEERDEIKAQAQYVSGTATSQVQGAEEEHISFSAELPKIHSNDLVPPSQADMDR LQDWRYSRSLSPESLNPNSPGQKLTFLMAKENHHQSMQSNNSPSNSSHHFAHPHDSPG NQAVQHISSDLGSHSCRELPRNKNELYALVPHETSGRFTGVLDSLKQARLSLQQKIST LSLVEGASVGKAIETSGSGRKVGERVEIPLGCSGLFRVPTDISVEAPKANFLGSSSQL SLANHYPDRGVAPTASNHLLTTSYMNTQSSSSSNYQPVSSDRFFSGPYMYPRTSSSPF PTAFASSGYIKDDQILTGQCEETGSRLSTPKPSFDPSLEPVLPSSSLQNYPTFPSYPD LVPQIHAKEGFPAFHTTRSVGATPDWFSFYDSHFRPDIHRL" CDS complement(join(14127099..14128289,14132532..14132653, 14132786..14132883,14133271..14133704,14133859..14133976, 14135009..14135043)) /locus_tag="TCM_044159" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY19204.1" /db_xref="Phytozome:POPTR_0008s02540.1" /db_xref="TAIR:AT3G52240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL30" /translation="MHNSDQVKQDQRTTCNVEDSTMTIEFLRARLLSERSVSKSARQR VDELAKRVAELEKQLKFVSVQRRRAEKATADVLAILENNGVSDISEELDSSSDQDAPF ESNINNGSTKEEESSVTSKVRQKESEELSGSEFDCSSASGRSLSWKGRKSASHSPERY KDKLVRSRNSFASISFSSRKHRQGKSCRQIRRRESRSVAEELKSDNIMVDPQVKGLEN SSEVNANHSTGEKDMEKALEHQAQLIVHYEAMERAQREWEEKFREKNSSSPDSCDPGN HSDVTEERDEIKAQAQYVSGTATSQVQGAEEEHISFSAELPKIHSNDLVPPSQADMDR LQDWRYSRSLSPESLNPNSPGQKLTFLMAKENHHQSMQSNNSPSNSSHHFAHPHDSPG NQAVQHISSDLGSHSCRELPRNKNELYALVPHETSGRFTGVLDSLKQARLSLQQKIST LSLVEGASVGKAIETSGSGRKVGERVEIPLGCSGLFRVPTDISVEAPKANFLGSSSQL SLANHYPDRGVAPTASNHLLTTSYMNTQSSSSSNYQPVSSDRFFSGPYMYPRTSSSPF PTAFASSGYIKDDQILTGQCEETGSRLSTPKPSFDPSLEPVLPSSSLQNYPTFPSYPD LVPQIHAKEGFPAFHTTRSVGATPDWFSFYDSHFRPDIHRL" CDS complement(join(14127099..14128289,14132532..14132883, 14133271..14133704,14133859..14133976,14135009..14135043)) /locus_tag="TCM_044159" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY19205.1" /db_xref="Phytozome:POPTR_0008s02540.1" /db_xref="TAIR:AT3G52240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL30" /translation="MHNSDQVKQDQRTTCNVEDSTMTIEFLRARLLSERSVSKSARQR VDELAKRVAELEKQLKFVSVQRRRAEKATADVLAILENNGVSDISEELDSSSDQDAPF ESNINNGSTKEEESSVTSKVRQKESEELSGSEFDCSSASGRSLSWKGRKSASHSPERY KDKLVRSRNSFASISFSSRKHRQGKSCRQIRRRESRSVAEELKSDNIMVDPQVKGLEN SSEVNANHSTGGPHILPMGSEIHENKSTVDNLHSDALKNERNVTGFDLDFHGYEGEKD MEKALEHQAQLIVHYEAMERAQREWEEKFREKNSSSPDSCDPGNHSDVTEERDEIKAQ AQYVSGTATSQVQGAEEEHISFSAELPKIHSNDLVPPSQADMDRLQDWRYSRSLSPES LNPNSPGQKLTFLMAKENHHQSMQSNNSPSNSSHHFAHPHDSPGNQAVQHISSDLGSH SCRELPRNKNELYALVPHETSGRFTGVLDSLKQARLSLQQKISTLSLVEGASVGKAIE TSGSGRKVGERVEIPLGCSGLFRVPTDISVEAPKANFLGSSSQLSLANHYPDRGVAPT ASNHLLTTSYMNTQSSSSSNYQPVSSDRFFSGPYMYPRTSSSPFPTAFASSGYIKDDQ ILTGQCEETGSRLSTPKPSFDPSLEPVLPSSSLQNYPTFPSYPDLVPQIHAKEGFPAF HTTRSVGATPDWFSFYDSHFRPDIHRL" CDS complement(join(14127099..14128289,14132532..14132883, 14133271..14133704,14133859..14133976,14134275..14134356, 14134500..14134572)) /locus_tag="TCM_044159" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19202.1" /db_xref="Phytozome:GSVIVT01034734001" /db_xref="TAIR:AT3G52240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UBW8" /translation="MRTAHADPTLIFQAMVADIGANFRVPILWREPLDTLEVHVSVPL KQAFLLPMTTCNVEDSTMTIEFLRARLLSERSVSKSARQRVDELAKRVAELEKQLKFV SVQRRRAEKATADVLAILENNGVSDISEELDSSSDQDAPFESNINNGSTKEEESSVTS KVRQKESEELSGSEFDCSSASGRSLSWKGRKSASHSPERYKDKLVRSRNSFASISFSS RKHRQGKSCRQIRRRESRSVAEELKSDNIMVDPQVKGLENSSEVNANHSTGGPHILPM GSEIHENKSTVDNLHSDALKNERNVTGFDLDFHGYEGEKDMEKALEHQAQLIVHYEAM ERAQREWEEKFREKNSSSPDSCDPGNHSDVTEERDEIKAQAQYVSGTATSQVQGAEEE HISFSAELPKIHSNDLVPPSQADMDRLQDWRYSRSLSPESLNPNSPGQKLTFLMAKEN HHQSMQSNNSPSNSSHHFAHPHDSPGNQAVQHISSDLGSHSCRELPRNKNELYALVPH ETSGRFTGVLDSLKQARLSLQQKISTLSLVEGASVGKAIETSGSGRKVGERVEIPLGC SGLFRVPTDISVEAPKANFLGSSSQLSLANHYPDRGVAPTASNHLLTTSYMNTQSSSS SNYQPVSSDRFFSGPYMYPRTSSSPFPTAFASSGYIKDDQILTGQCEETGSRLSTPKP SFDPSLEPVLPSSSLQNYPTFPSYPDLVPQIHAKEGFPAFHTTRSVGATPDWFSFYDS HFRPDIHRL" mobile_element complement(14136414..14136461) /note="source:CACAO_Mutator_E1149_scaffold_5 4720 4767" /mobile_element_type="transposon:TIR/Mutator" mobile_element 14140158..14140198 /note="source:CACAO_M_E43428_F369_scaffold_5 1291 1331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14140535..14143492) /note="source:CACAO_Mutator_E1149_scaffold_5 349 3297" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(14144651..14144829) /note="source:CACAO_M_S_E99244_F4_scaffold_9 9991 10168" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14148216..14148291 /note="source:CACAO_M_S_E4534_F4_scaffold_1 4216 4291" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14148292..14156769) /note="source:CACAO_M_E36574_F4_scaffold_5 1 8304" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14159661..14162625 /note="source:CACAO_M_E22525_F273_scaffold_3 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14164671..14166225) /note="source:INTACT194_F169_scaffold_1-int 3313 4931" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(14165022..14174954) /locus_tag="TCM_044162" /note="dbxref CacaoGD:Thecc1EG044162" mRNA complement(join(14165022..14165059,14173918..14174754, 14174838..14174954)) /locus_tag="TCM_044162" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011994t1" /inference="similar to AA sequence:Phytozome:Glyma15g17820.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage" mobile_element complement(14166226..14167949) /note="source:CACAO_M_E9677_F7_scaffold_2 11130 12852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14167950..14170730) /note="source:CACAO_M_E72790_F15_scaffold_10 1 2758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14170731..14171977 /note="source:CACAO_M_S_E145698_F277_scaffold_11 14809 16061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14171949..14175269) /note="source:INTACT194_F169_scaffold_1-int 1 3347" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(14174099..14174754,14174838..14174853)) /locus_tag="TCM_044162" /note="paralog of Thecc1EG011994t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19206.1" /db_xref="Phytozome:Glyma15g17820.1" /translation="MVSELLFVAAAGFNTSAPPVLTGENYVIWSVKIRSYLKAYCLRE VVETSEDLIQHHANPTLAQIRQFEEDKAKRYKALSSLHSAISDEIFFRIMHLDSPKEV WDHLKDEFFGSDRTRHIQSLNLSRQFEMLRMEDDENIKEFFRRMMSIVNQLRLLGKAV TEEKLVHKILVSLLEKYESKISSLEDSRDITQMTMKELVNILEGLKQRRVFRQRGVVD SALVA" gene 14175206..14175752 /locus_tag="TCM_044164" /note="dbxref CacaoGD:Thecc1EG044164" mRNA 14175206..14175752 /locus_tag="TCM_044164" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047097t1" /inference="similar to AA sequence:ricco:29636.m000754" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14554t00001" CDS 14175251..14175565 /locus_tag="TCM_044164" /note="dbxref ricco:29636.m000754; paralog of Thecc1EG047097t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY19207.1" /db_xref="TAIR:AT3G47110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SIS0" /translation="MKPSFNNFLGSATPVVTENETDKRALLEFKAKIIDDHFGVMHSW NNTIPFCQWHVVSCGHRHQRITKLDLRSIKLVGSISPFIGNLSFLRVLNLENNSFHQA IP" gene 14175799..14185620 /locus_tag="TCM_044165" /note="dbxref CacaoGD:Thecc1EG044165" mRNA join(14175799..14176601,14177189..14177512, 14177774..14177875,14178090..14178482,14178632..14178662, 14185327..14185620) /locus_tag="TCM_044165" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate-protein:2:frave:gene23554" /inference="similar to AA sequence:ricco:29685.m000489" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS join(14175962..14176601,14177189..14177512, 14177774..14177875,14178090..14178482,14178632..14178636) /locus_tag="TCM_044165" /note="dbxref ricco:29685.m000489" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY19208.1" /db_xref="TAIR:AT3G47110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SS82" /translation="MNTNQIQGSLPLDLGITMSCIETLAVADNQFTGPIPVSISNASN LVEFNVVENKLSGSLPSFEKLDKLSRFVIGVNLLGSMKSTDLNFLYTLNIASRLKFLL IGENNFGGVLPDCIGNLSSNLVTFKTQDSRILGRIPTGIENLINLELLAVSNNQLSGS IPLDIGRLQKLRTFYSPRNSLSGSIPPSFGNLTMLITLDLEDNNLHGNIPSSLGVTLV FSFLLIWCFRKKKEEPITTYAEKSLLNLSYRCLLEATVSSANLVGSGSFGSVYKGILE ESGVVIVVKVLNLLCRGASRSFMAECETLKNIRHRNLVKVLTEISDFGLAKFITPDMQ NKSSSLSSSLGLRGTIGYAPPEYGLGSIVTTYGDVYSYGILLLEMFTGKKPTDKMFNE NLNLHSFVKTALQNQVVAVTDTVLLQGSFQGENMTNNSRNQRDNKLLQSLNSIFEIRV TCSVVLPTERMNMTDVVAKLSSIRDQLLPTRPLRSLG" mobile_element 14187292..14187818 /note="source:CACAO_M_E58324_F9_scaffold_9 1 528" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14187821..14192813) /note="source:CACAO_M_E58819_F24_scaffold_9 9099 14103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14192793..14193030) /note="source:CACAO_M_E58819_F24_scaffold_9 11277 11459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14192993..14193910 /note="source:CACAO_M_E58324_F9_scaffold_9 527 1446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14194446..14194826 /note="source:scaffold_2_CACTA_0256 11254 11634" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14194689..14194826 /note="source:CACAO_M_E33228_F15_scaffold_4 7856 7903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14194827..14197483) /note="source:CACAO_M_S_E123993_F15_scaffold_10 205 2861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14197720..14197923) /note="source:CACAO_M_S_E123993_F15_scaffold_10 1 204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14197926..14200315 /note="source:CACAO_M_E70068_F87_scaffold_10 397 2785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14201532..14204493) /note="source:CACAO_M_S_E122136_F76_scaffold_10 1324 4288" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14204030..14204989 /note="source:CACAO_M_E22484_F328_scaffold_3 9453 10410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14205324..14205985) /note="source:CACAO_M_E43590_F7_scaffold_5 4815 5481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14205957..14206495 /note="source:CACAO_M_E22484_F328_scaffold_3 14803 15338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14206132..14207034) /note="source:CACAO_M_S_E122136_F76_scaffold_10 3374 4277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14207032..14209985) /note="source:CACAO_M_E72783_F33_scaffold_10 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14209986..14212037 /note="source:INTACT34_F115_scaffold_5-int 1064 3118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14213949..14213981) /note="source:INTACT407F_F356_scaffold_4-int 14349 14382" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14214769..14218627 /note="source:CACAO_M_E58324_F9_scaffold_9 1 3881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14219663..14220297) /note="source:INTACT85_F9_scaffold_4-int 9423 10043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14220368..14224707 /note="source:CACAO_M_S_E52339_F15_scaffold_5 6949 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14224706..14224933) /note="source:CACAO_M_S_E98116_F164_scaffold_8 1480 1705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14224928..14225079) /note="source:INTACT39F_F22_scaffold_1-int 5443 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14226756..14227126) /note="source:INTACT642F_F365_scaffold_5-int 5911 6279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14228317..14228358) /note="source:scaffold_3_CACTA_0382 11836 11876" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14228606..14228787 /note="source:scaffold_3_CACTA_0382 10027 10205" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14228796..14228899) /note="source:INTACT39F_F22_scaffold_1-int 8082 8183" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14229898..14230136) /note="source:scaffold_3_CACTA_0382 10413 10643" /mobile_element_type="transposon:TIR/CACTA" gene 14235168..14239337 /locus_tag="TCM_044169" /note="dbxref CacaoGD:Thecc1EG044169" mRNA join(14235168..14235723,14237232..14237462, 14237647..14237805,14237958..14238110,14238302..14238385, 14238511..14239337) /locus_tag="TCM_044169" /product="Regulatory particle triple-A ATPase 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30045.m000470" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044172t1" /inference="similar to AA sequence:Phytozome:Glyma18g05730.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01494t00002_C2" CDS join(14235226..14235723,14237232..14237462, 14237647..14237805,14237958..14238110,14238302..14238385, 14238511..14238645) /locus_tag="TCM_044169" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044172t1" /codon_start=1 /product="Regulatory particle triple-A ATPase 3 isoform 1" /protein_id="EOY19209.1" /db_xref="Phytozome:Glyma18g05730.1" /db_xref="TAIR:AT5G58290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43686" /translation="MAASAMVVEPKPSAEPPFPSTRSDLGQALVVDPTGTEEDDLYSR LKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK AVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARF DAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEF PLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR YVILPKDFEKGYRTNVKKPDTDFEFYK" mRNA join(<14235610..14235723,14237232..14237462, 14237647..14237805,14237958..14238110,14238302..14238385, 14238511..14238641,14238754..14239051) /locus_tag="TCM_044169" /product="Regulatory particle triple-A ATPase 3 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30045.m000470" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044172t1" /inference="similar to AA sequence:Phytozome:GSVIVT01024544001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7641t2; inference alignment:Newbler:10:TSA:cgbaP2_g01494t00002_C2; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc5518t1" CDS join(<14235610..14235723,14237232..14237462, 14237647..14237805,14237958..14238110,14238302..14238385, 14238511..14238641,14238754..14238757) /locus_tag="TCM_044169" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG044172t1" /codon_start=1 /product="Regulatory particle triple-A ATPase 3 isoform 2" /protein_id="EOY19210.1" /db_xref="Phytozome:GSVIVT01024544001" /db_xref="TAIR:AT5G58290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P34123" /translation="ASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCD IQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIR VVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQR ILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF QVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY RTNVKKPDTDFEFYK" gene complement(14240352..14244515) /locus_tag="TCM_044170" /note="dbxref CacaoGD:Thecc1EG044170" mRNA complement(join(14240352..14241035,14241138..14241272, 14243018..14243098,14243929..14243984,14244274..14244515)) /locus_tag="TCM_044170" /product="Ubiquitin-protein ligase-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044175t2" /inference="similar to AA sequence:ricco:27461.m000099" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc7067t1" CDS complement(join(14240724..14241035,14241138..14241272, 14243018..14243098,14243929..14243984,14244274..14244361)) /locus_tag="TCM_044170" /note="dbxref ricco:27461.m000099; paralog of Thecc1EG044175t2" /codon_start=1 /product="Ubiquitin-protein ligase-like protein" /protein_id="EOY19211.1" /translation="MTNNDLVLLTQNFANLVEFAFLGCKLLNSDARCIISSEWPGLIS IHLKDCKEVTRSSVCSLFNCTALEDLLLRHNGTEQNVMMMVYMIRGYKMKMNDKRSRF NLAEKPCANDSSFTNISETQEIVFANGVTCPVFARNLEGTKIEFKKAVSASDGLNHTD HDMVSGDDVLADKVAGIENVYGNTSSTISNVEKVNAFLAHLGIDSSMDLFLDISDVDS DTISD" mobile_element 14249819..14249880 /note="source:CACAO_M_E70891_F369_scaffold_10 1385 1447" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14252769..14262918 /locus_tag="TCM_044172" /note="dbxref CacaoGD:Thecc1EG044172" mRNA join(14252769..14253126,14258974..14259616, 14261121..14261351,14261535..14261693,14261847..14261999, 14262190..14262273,14262388..14262918) /locus_tag="TCM_044172" /product="Regulatory particle triple-A ATPase 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g05730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044169t1" /inference="similar to AA sequence:Phytozome:Glyma18g05730.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7742t19" mobile_element complement(14254036..14254171) /note="source:INTACT296_F13_scaffold_9-int 4834 4969" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14255146..14256075 /locus_tag="TCM_044173" /note="dbxref CacaoGD:Thecc1EG044173" mRNA 14255146..14256075 /locus_tag="TCM_044173" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS 14255155..14255412 /locus_tag="TCM_044173" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19214.1" /translation="MALFMFQTFPMASPYFVTPTTITLMEVNDCFHRSIIAILSCKGH TSLAQQESIVLFFLFGKNKLSFDISSDSCVNPNIPVIPSDY" mRNA join(14258985..14259616,14261121..14261351, 14261535..14261693,14261847..14262003,14262190..14262273, 14262388..14262543) /locus_tag="TCM_044172" /product="Regulatory particle triple-A ATPase 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g05730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044169t1" /inference="similar to AA sequence:ricco:30045.m000470" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7742t20; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7742t19" CDS join(14259119..14259616,14261121..14261351, 14261535..14261693,14261847..14261999,14262190..14262273, 14262388..14262468) /locus_tag="TCM_044172" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044169t1" /codon_start=1 /product="Regulatory particle triple-A ATPase 3 isoform 1" /protein_id="EOY19212.1" /db_xref="Phytozome:Glyma18g05730.1" /db_xref="TAIR:AT5G58290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43686" /translation="MAASAMVVEPKPLAEPPFPSTRSDLGQALAVDPTGTEEDDLYSR LKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK AVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARF DAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEF PLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAIYQEEEMHAIQKKE PICHTSQGL" CDS join(14259119..14259616,14261121..14261351, 14261535..14261693,14261847..14262003,14262190..14262203) /locus_tag="TCM_044172" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30045.m000470; paralog of Thecc1EG044169t1" /codon_start=1 /product="Regulatory particle triple-A ATPase 3 isoform 2" /protein_id="EOY19213.1" /db_xref="TAIR:AT5G58290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43686" /translation="MAASAMVVEPKPLAEPPFPSTRSDLGQALAVDPTGTEEDDLYSR LKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK AVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARF DAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEF PLPDRRQKRLVFQASLHC" gene 14263506..14264274 /locus_tag="TCM_044174" /note="dbxref CacaoGD:Thecc1EG044174" mRNA 14263506..14264274 /locus_tag="TCM_044174" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17359t4" gene complement(14263600..14279415) /locus_tag="TCM_044175" /note="dbxref CacaoGD:Thecc1EG044175" mRNA complement(join(14263600..14265230,14266735..14266978, 14267670..14267950,14269919..14270046,14271857..14272041, 14272188..14272378,14272462..14272591,14272716..14272775, 14273948..14274019,14274441..14274546,14274615..14274754, 14275034..14275340,14276647..14276752)) /locus_tag="TCM_044175" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032568001" /inference="similar to AA sequence:Phytozome:POPTR_0010s24450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9163t21_C2" mRNA complement(join(14263640..14265230,14266735..14266978, 14267670..14267950,14269919..14270046,14271857..14272041, 14272188..14272378,14272462..14272591,14272716..14272775, 14273948..14274019,14274441..14274546,14277567..14277631, 14278501..14278618,14279069..14279415)) /locus_tag="TCM_044175" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032568001" /inference="similar to AA sequence:ricco:29839.m000429" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc487t10; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9163t21_C2" CDS 14264009..14264245 /locus_tag="TCM_044174" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19215.1" /translation="MIVFVAQSITILSCKGHTSLAQQESIVIFFLFGKNKLSLDINSD SCVNPNVPVIPSDYKSSSLMIDTVHSPKPNVNFK" CDS complement(join(14264443..14265230,14266735..14266978, 14267670..14267950,14269919..14270046,14271857..14272041, 14272188..14272378,14272462..14272591,14272716..14272775, 14273948..14274019,14274441..14274546,14277567..14277631, 14278501..14278618,14279069..14279112)) /locus_tag="TCM_044175" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29839.m000429" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY19217.1" /db_xref="TAIR:AT1G30240.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQA6" /translation="MSGSIACYCCSLAIWSDKCWLGICLLGVTCQECSSDRFLSSYSV WLHKLLSHIQPPADSQLVKVASCAAISVLFTRLARFPNVKKDGTLLAGKLIQPVLKLL NDDSVEAVWEGAASLLYTIITFFPAAIHHYYDRAEAAIASKILSGKYSTRTLKKLGYC LALLPKSKGDEDSWSLMMQKILLSINDLLNDAFQGVEEEAKSDEVRRLLVPPGKDLPS PLGHTPLESASHEATRSSERLPASTVSTLIFCCCKMLTSSYPIQVTAPIRAMLALVER LLMVDGSLPHTMLPFMTAMQHELICSELPVLHAHALELLIAIIKGMRRQLLPHAAYVV RLVTRYFRRCALPELRIKLYSITRMLLISMGVGMAIYLAPDVIDNAINDLNSFGDEDV ETSPTNIGPSTGALPQPSNRKRKHGTKTGSPEEKQTISSEVEPLNPHQTTPITVKIAA LDTLEVLLTVGGASKSESWRSRIDSLLIKTATNSCKRGWGNEENNNFLPHESTSIWVD FQLSSLRALLASFLAPARIRPPFLSQGLELFRKGKQEAGTKLAGFCASALLALEVLIH PRALPLDDFPSSYQTFTDGASHRFPENMPFYGQKGDTMFSKSMQGAEQSALKSDDDDL YDRWLQNENENENIPIENMNDKRSRFNFVEKPCANDSSFTNILEVSEQELAAPDADVH MRGKDEIMVQPWHSQESIQQTQEIVSAKGVTSPVVARNPEGTEIEFKAAVSASDGLNQ TDHDIVSDVLADKVDGFDNVCGNTSSTISNVEKVNASVAHLDSDSSMDSFPAIVDADP DTDSD" CDS complement(join(14264443..14265230,14266735..14266978, 14267670..14267950,14269919..14270046,14271857..14272041, 14272188..14272378,14272462..14272591,14272716..14272775, 14273948..14274019,14274441..14274546,14274615..14274754, 14275034..14275150)) /locus_tag="TCM_044175" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19216.1" /db_xref="Phytozome:POPTR_0010s24450.1" /db_xref="TAIR:AT1G30240.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQA6" /translation="MLGKREDKEEATFLSSTSYDGKFHSFQLHSWVLRPSAFWVESLK VVPLVICLSFLLHSAGACNHFCFSCFYFVIEIVSNSKFNTQRLARFPNVKKDGTLLAG KLIQPVLKLLNDDSVEAVWEGAASLLYTIITFFPAAIHHYYDRAEAAIASKILSGKYS TRTLKKLGYCLALLPKSKGDEDSWSLMMQKILLSINDLLNDAFQGVEEEAKSDEVRRL LVPPGKDLPSPLGHTPLESASHEATRSSERLPASTVSTLIFCCCKMLTSSYPIQVTAP IRAMLALVERLLMVDGSLPHTMLPFMTAMQHELICSELPVLHAHALELLIAIIKGMRR QLLPHAAYVVRLVTRYFRRCALPELRIKLYSITRMLLISMGVGMAIYLAPDVIDNAIN DLNSFGDEDVETSPTNIGPSTGALPQPSNRKRKHGTKTGSPEEKQTISSEVEPLNPHQ TTPITVKIAALDTLEVLLTVGGASKSESWRSRIDSLLIKTATNSCKRGWGNEENNNFL PHESTSIWVDFQLSSLRALLASFLAPARIRPPFLSQGLELFRKGKQEAGTKLAGFCAS ALLALEVLIHPRALPLDDFPSSYQTFTDGASHRFPENMPFYGQKGDTMFSKSMQGAEQ SALKSDDDDLYDRWLQNENENENIPIENMNDKRSRFNFVEKPCANDSSFTNILEVSEQ ELAAPDADVHMRGKDEIMVQPWHSQESIQQTQEIVSAKGVTSPVVARNPEGTEIEFKA AVSASDGLNQTDHDIVSDVLADKVDGFDNVCGNTSSTISNVEKVNASVAHLDSDSSMD SFPAIVDADPDTDSD" gene complement(14277807..14279502) /locus_tag="TCM_044176" /note="dbxref CacaoGD:Thecc1EG044176" mRNA complement(join(14277807..14278792,14279069..14279502)) /locus_tag="TCM_044176" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032568001" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9163t21_C2" CDS complement(join(14278730..14278792,14279069..14279344)) /locus_tag="TCM_044176" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19218.1" /translation="MAGFKQSKNMYDVGLKPLMLRSLMGQYVPDEKHPVSLNSSCFEL SKVVSILQTHRLLSEWYPQSMDVKLVHSWKSAVDEWVNRLLLLLSSDMSKPLNGEIPL IREEKVSKFI" mobile_element 14282575..14283158 /note="source:INTACT135F_F90_scaffold_2-int 13385 14012" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14283193..14284581) /note="source:CACAO_Mariner_E180_scaffold_6 1356 2767" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(14285072..14286578) /note="source:scaffold_2_CACTA_0253 3114 4598" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14288049..14288193) /note="source:CACAO_M_E58601_F7_scaffold_9 4155 4314" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14288478..14288550 /note="source:INTACT713_F309_scaffold_9-int 1007 1075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14288505..14290772 /note="source:CACAO_M_S_E4534_F4_scaffold_1 2503 4771" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(14290784..14291852) /locus_tag="TCM_044177" /note="dbxref CacaoGD:Thecc1EG044177" mRNA complement(join(14290784..14291345,14291658..14291852)) /locus_tag="TCM_044177" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS complement(join(14291035..14291345,14291658..14291754)) /locus_tag="TCM_044177" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19219.1" /translation="MGDLPDAKTSLSMHNFCHALSNGLFICTWYKIGYHKSYTNQFTS HQISEWCSPRHSHVTHNGQSIEKQITHRAKSLAEHKSHACQTSRLRIKSRPVPKQLAK NHIIDWSNLPTVGIALSNLLSATSLGVISRWAT" mobile_element complement(14293529..14295357) /note="source:INTACT224_F176_scaffold_8-int 951 2575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14295361..14295908) /note="source:CACAO_M_E5326_F22_scaffold_2 19816 20358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14298270..14300543 /note="source:scaffold_4_CACTA_0493 2831 5080" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14299070..14300292) /note="source:scaffold_5_CACTA_0596 1826 3046" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14300530..14310762) /note="source:CACAO_M_E72770_F13_scaffold_10 1 10220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14310764..14311168) /note="source:INTACT713_F309_scaffold_9-int 1027 1430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14313389..14315201 /note="source:scaffold_2_CACTA_0276 8458 10312" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14317546..14317856 /note="source:INTACT1443F_F12_scaffold_9-int 8206 8497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14317616..14318166 /note="source:scaffold_5_CACTA_0585 7018 8383" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14318167..14319120) /note="source:CACAO_M_E42395_F3_scaffold_5 16197 17154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14318812..14320257 /note="source:CACAO_M_E56560_F259_scaffold_8 1294 2667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14319121..14319203 /note="source:scaffold_5_CACTA_0585 8384 8594" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14320254..14322952) /note="source:CACAO_M_E72766_F369_scaffold_10 1 2699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14322955..14324465 /note="source:CACAO_M_E56560_F259_scaffold_8 2659 4168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14324459..14325516) /note="source:CACAO_M_E42395_F3_scaffold_5 16197 17154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14325388..14326587 /note="source:CACAO_M_E56560_F259_scaffold_8 1512 2596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14327812..14328666 /note="source:CACAO_M_E48452_F5_scaffold_6 7177 8030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14328647..14329040) /note="source:CACAO_M_S_E15173_F4_scaffold_2 7650 8044" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14329030..14331078 /note="source:CACAO_M_E48452_F5_scaffold_6 8550 10542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14331763..14331853) /note="source:CACAO_M_E35511_F5_scaffold_5 10493 10588" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14331854..14331903) /note="source:CACAO_M_S_E84261_F4_scaffold_6 1717 1849" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14331904..14332379 /note="source:CACAO_M_E3654_F4_scaffold_1 5171 5643" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14332380..14335311) /note="source:CACAO_M_E72761_F170_scaffold_10 1 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14335312..14336412 /note="source:INTACT10_F4_scaffold_6-int 5918 7048" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14336410..14337596) /note="source:CACAO_M_E589_F323_scaffold_1 2278 3465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14337697..14339978) /note="source:CACAO_M_E33634_F323_scaffold_4 1 2280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14339979..14341529) /note="source:CACAO_M_S_E98216_F4_scaffold_8 1 1535" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14341531..14342490) /note="source:CACAO_M_E33018_F264_scaffold_4 1 969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14344402..14345404) /note="source:INTACT409F_F47_scaffold_4-int 1 1019" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14346304..14346377 /note="source:scaffold_5_CACTA_0610 5224 5297" /mobile_element_type="transposon:TIR/CACTA" gene 14347757..14360981 /locus_tag="TCM_044182" /note="dbxref CacaoGD:Thecc1EG044182" mRNA join(14347757..14347939,14348732..14349299, 14349624..14349864,14351200..14351477,14352380..14352550, 14352704..14353483,14353591..14353679,14354530..14354592, 14354748..14354836,14354966..14355004,14355586..14356260, 14356525..14356599,14356801..14356871,14356961..14357018, 14358938..14359205,14359457..14360981) /locus_tag="TCM_044182" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29930.m000630" /inference="similar to AA sequence:Phytozome:POPTR_0010s24490.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc55t7" mRNA join(14348731..14349299,14349624..14349864, 14351200..14351477,14352380..14352550,14352704..14353483, 14353591..14353679,14354530..14354592,14354748..14354836, 14354966..14355004,14355586..14356260,14356525..14356639, 14356801..14356828) /locus_tag="TCM_044182" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29930.m000630" /inference="similar to AA sequence:Phytozome:POPTR_0010s24490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc56t3; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc55t7" CDS join(14348881..14349299,14349624..14349864, 14351200..14351477,14352380..14352550,14352704..14353483, 14353591..14353679,14354530..14354592,14354748..14354836, 14354966..14355004,14355586..14356260,14356525..14356599, 14356801..14356871,14356961..14357018,14358938..14359205, 14359457..14360097) /locus_tag="TCM_044182" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19220.1" /db_xref="Phytozome:POPTR_0010s24490.1" /db_xref="TAIR:AT5G22450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVX5" /translation="MVGNVRVELSSASPDELSFPGSYPNGQRGNYPGVSFDRSGSFRE GNESRMFSPGTSTSRGGSTSAADVPPLSLWLTLDPITMGDQKYTRSGELRKVLGISFG SAAEDNSFGAAHMKPPPVATEELKRFKSSISETFMRARTRAKKLDECLQKLNKYFETI GSKKQQRNEMLTNERSGSNLLKMGILMQRNPSDVVSQRLEDRTKNVVMNKRVRSSMAE LRAEGRSNMPARQPLVMGKDKDMPKDNGESSDLVEEKIRRLPTGGEGWDKKMKRKRSI GTVFTRPMDSDGELKRAMHHKLNNEPGLQSSDTQGFRSGLSNGTNGINKFDGTSLAAN SSVRGMSRNDVEKLSLSRDFVAGSTKERILAKGNNKLNIREDNHLVSNIPVTKGKASR GPRSGPVVAANSSPNFPRSSGALDGWEQSPSANKVHSVGGANNRKRPLPSGSSSPPMA QWGGQRPQKISRTRRTNLVSPVSNLDELQVSSEGCLPDLGSKVTSVGTTELILAKGMV NGAQQLKIKHENVSSSARLSESEESAAGENRESRLKDKAMGSNEVEERTMNAVQNIGS SVLLTKENKMPEEESGDGVRRQGRSGRGSSNSRTSFSPMMEKLENPTSTKPLKITRHG SDKSGSKSGRPPLKKLSDRKLTRLGLTPTGSPDLCGESDDDREELLAAANFSCNASYL KCSSSFWKQMEPIFVPISLEDSSHLKQELRSTEDHHNSLTQGDSLHEEDVLSQTSLSG ETARSLQDQNYSKESARTVDFVDQVEEIVSFSERSNAGGKQISPLYQRVLSALIVEDK TAEFEENGRWSNAFFQHHREDLPGGTCLPTKVEAGKGLWVEAAHESMLSPQAQKHSIG DNFPCNGFTTFSSAASYHPQLQNDDLLPDGCGFSNSDRGMLSEVSKNGSGGPLSIHII SSGISSPDCQYGQMSLEDKLILELLNIGICVESVPDLADGEDEIIDQDIVELQKRLNQ QADKKKKYFNKIINAVEEVKKNEGRNLEQLAMDRLVEIAYKKRLATRASCASKSGITK VSKQVALAFIKRTLARCQKFEETGKSCFTEPAYRDVIFSAPPRGIDSESVKGFGSVVA ASMQPENNNSHMEPGGPDPLASRVERLHNDKIGGAPFDGFGTLTDPSHQEFAKTRPIL NRWKKKDVLLNDVSGSASLRAASALDNTVLGGAKGKRSERERDKDIKVSSGKAGRASI GNLKGERKTKSKPKQKTAQLSTSGNGFSNKLTETTRPTGNKKRVGLMSHDNVPQDSFQ EMKEQLDLQLPEFGSIEELGVANQDLDTWLNIEEDGLQDHDLMGLQIPMDDLSDIL" CDS join(14348881..14349299,14349624..14349864, 14351200..14351477,14352380..14352550,14352704..14353483, 14353591..14353679,14354530..14354592,14354748..14354836, 14354966..14355004,14355586..14356260,14356525..14356635) /locus_tag="TCM_044182" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY19221.1" /db_xref="Phytozome:POPTR_0010s24490.1" /db_xref="TAIR:AT5G22450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AXV9" /translation="MVGNVRVELSSASPDELSFPGSYPNGQRGNYPGVSFDRSGSFRE GNESRMFSPGTSTSRGGSTSAADVPPLSLWLTLDPITMGDQKYTRSGELRKVLGISFG SAAEDNSFGAAHMKPPPVATEELKRFKSSISETFMRARTRAKKLDECLQKLNKYFETI GSKKQQRNEMLTNERSGSNLLKMGILMQRNPSDVVSQRLEDRTKNVVMNKRVRSSMAE LRAEGRSNMPARQPLVMGKDKDMPKDNGESSDLVEEKIRRLPTGGEGWDKKMKRKRSI GTVFTRPMDSDGELKRAMHHKLNNEPGLQSSDTQGFRSGLSNGTNGINKFDGTSLAAN SSVRGMSRNDVEKLSLSRDFVAGSTKERILAKGNNKLNIREDNHLVSNIPVTKGKASR GPRSGPVVAANSSPNFPRSSGALDGWEQSPSANKVHSVGGANNRKRPLPSGSSSPPMA QWGGQRPQKISRTRRTNLVSPVSNLDELQVSSEGCLPDLGSKVTSVGTTELILAKGMV NGAQQLKIKHENVSSSARLSESEESAAGENRESRLKDKAMGSNEVEERTMNAVQNIGS SVLLTKENKMPEEESGDGVRRQGRSGRGSSNSRTSFSPMMEKLENPTSTKPLKITRHG SDKSGSKSGRPPLKKLSDRKLTRLGLTPTGSPDLCGESDDDREELLAAANFSCNASYL KCSSSFWKQMEPIFVPISLEDSSHLKQELRSTEDHHNSLTQGDSLHEEDVLSQTSLSG ETARSLQDQNYSKESARTVDFVDQVEEIVSFSERSNAGGKQISPLYQRVLSALIVEDK TAEFEENGRWSNAFFQHHREDLPGGTCLPTKVEAGKGLWVEAAHESMLSPQAQKHSIG DNFPCNGFTTFSSAASYHPQLQNDDLLPDGCGFSNSDRGMLSEVSKNGSGGPLSIHII SSGISSPDCQYGQMSLEDKLILELLNIGICVESVPDLADGEDEIIDQDIVELQKRLNQ QVIFPAFLKQNL" mobile_element complement(14364075..14366137) /note="source:scaffold_6_CACTA_0709 4043 6134" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14367313..14369170) /note="source:CACAO_M_E72756_F4_scaffold_10 1 1858" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14370033..14370608) /note="source:CACAO_M_E9272_F4_scaffold_2 1272 1854" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14370609..14371443 /note="source:CACAO_M_E52278_F17_scaffold_7 1 853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14373692..14375957) /note="source:CACAO_M_E4753_F17_scaffold_2 11740 14004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14375949..14380600) /note="source:CACAO_M_E11488_F17_scaffold_2 1 7225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14380601..14381199) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3554 4165" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14381389..14386743 /locus_tag="TCM_044184" /note="dbxref CacaoGD:Thecc1EG044184" mRNA join(14381389..14381593,14384292..14384380, 14385906..14386019,14386202..14386743) /locus_tag="TCM_044184" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.26 coverage" CDS join(14384341..14384380,14385906..14386019, 14386202..14386305) /locus_tag="TCM_044184" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19222.1" /translation="MFAGNSERSIEHDGSIVSKAQFGPMVLLCVNALRPDACWFTETN KQKWTSIGSQRKTGSHKNAVGIVCSWSAAMLRAFSLQRSTF" mobile_element 14392380..14392438 /note="source:scaffold_1_CACTA_0028 1903 1962" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14397182..14398694) /note="source:CACAO_M_E1841_F5_scaffold_1 25799 26504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14398773..14399019) /note="source:CACAO_M_E1841_F5_scaffold_1 4251 4483" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14398844..14399064 /note="source:CACAO_M_S_E84376_F22_scaffold_6 17462 17663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14399270..14399577) /note="source:CACAO_M_E1841_F5_scaffold_1 8544 8852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14399624..14400274 /note="source:INTACT506_F233_scaffold_3-int 2666 3310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14400263..14403222 /note="source:CACAO_M_S_E84376_F22_scaffold_6 12350 15327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14403228..14403981 /note="source:INTACT506_F233_scaffold_3-int 6620 7368" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14403904..14405370) /note="source:CACAO_M_E5899_F5_scaffold_2 21827 22974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14405508..14405689) /note="source:CACAO_M_E1841_F5_scaffold_1 9102 9267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14405900..14406234) /note="source:CACAO_M_E1841_F5_scaffold_1 8514 8852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14406234..14409761 /note="source:INTACT51F_F15_scaffold_1-int 2076 5578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14418036..14419643) /note="source:CACAO_M_S_E52921_F60_scaffold_5 1488 3061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14419634..14421796) /note="source:CACAO_M_E5899_F5_scaffold_2 20526 22700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14421691..14422002 /note="source:INTACT506_F233_scaffold_3-int 1364 1598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14421997..14422660) /note="source:CACAO_M_E1841_F5_scaffold_1 16002 16664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14425579..14426438) /note="source:CACAO_M_E5899_F5_scaffold_2 19650 20495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14426437..14427955) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3015 4533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14430632..14431033) /note="source:INTACT667_F51_scaffold_5-int 764 1163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14431889..14432443) /note="source:CACAO_M_E43672_F60_scaffold_5 16012 16574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14433202..14434824 /note="source:CACAO_M_E55707_F243_scaffold_8 231 1361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14434825..14437569) /note="source:CACAO_M_E72739_F15_scaffold_10 1 2733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14437570..14439133) /note="source:CACAO_M_E43772_F246_scaffold_5 1 1563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14437570..14437607 /note="source:INTACT616_F52_scaffold_1-int 2947 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14439025..14439158 /note="source:CACAO_M_S_E52921_F60_scaffold_5 16417 16549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14439134..14441776 /note="source:CACAO_M_S_E32186_F4_scaffold_3 2908 5518" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14441778..14444036) /note="source:CACAO_M_S_E51540_F83_scaffold_4 650 2913" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14444137..14444744 /note="source:CACAO_M_E5417_F281_scaffold_2 2300 2925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14444745..14445220 /note="source:INTACT160_F4_scaffold_7-int 17655 18130" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14445221..14448958) /note="source:INTACT741_F17_scaffold_3-int 5004 8691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14448963..14457173) /note="source:CACAO_M_E72736_F115_scaffold_10 1 8211" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14457498..14462314) /note="source:CACAO_M_E3326_F17_scaffold_1 2330 7088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14462310..14462380) /note="source:INTACT409F_F47_scaffold_4-int 6376 6447" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14462382..14463907) /note="source:INTACT741_F17_scaffold_3-int 8136 9663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14463908..14464207) /note="source:INTACT409F_F47_scaffold_4-int 6075 6379" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14464249..14464719) /note="source:INTACT409F_F47_scaffold_4-int 2643 3101" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14464745..14466156) /note="source:INTACT409F_F47_scaffold_4-int 1130 2568" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14466158..14466215) /note="source:INTACT409F_F47_scaffold_4-int 1130 1186" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14466190..14467396) /note="source:INTACT409F_F47_scaffold_4-int 1 1206" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14471249..14471539 /note="source:CACAO_M_S_E66812_F83_scaffold_6 1 291" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14471537..14474396) /note="source:CACAO_M_E12104_F281_scaffold_3 1 2878" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14475814..14478751) /note="source:CACAO_M_E72732_F246_scaffold_10 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14478861..14478974) /note="source:CACAO_M_S_E4534_F4_scaffold_1 4691 4801" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14486805..14487518) /note="source:CACAO_M_E1841_F5_scaffold_1 4758 5458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14487527..14488219) /note="source:CACAO_M_S_E14932_F233_scaffold_2 909 1629" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14488583..14491538) /note="source:CACAO_M_E72730_F273_scaffold_10 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14491549..14492082 /note="source:CACAO_M_E58819_F24_scaffold_9 15722 16268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14492609..14492637 /note="source:scaffold_4_CACTA_0497 1188 1248" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14492638..14492685) /note="source:CACAO_PIF_E119_scaffold_3 2592 2639" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(14499650..14502633) /note="source:CACAO_M_S_E123918_F7_scaffold_10 1 2984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14510644..14510826 /note="source:scaffold_6_CACTA_0702 12054 12237" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14513378..14521759 /note="source:CACAO_M_E11415_F328_scaffold_2 1 8683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14521840..14522154) /note="source:scaffold_4_CACTA_0498 11025 11339" /mobile_element_type="transposon:TIR/CACTA" gene complement(14533925..14535334) /locus_tag="TCM_044196" /note="dbxref CacaoGD:Thecc1EG044196" mRNA complement(14533925..14535334) /locus_tag="TCM_044196" /product="Matrixin family protein" /inference="alignment:exonerate- protein:2:frave:gene28335.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046068t1" /inference="similar to AA sequence:ricco:29822.m003413" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS complement(14534357..14535292) /locus_tag="TCM_044196" /note="dbxref ricco:29822.m003413; paralog of Thecc1EG046068t1" /codon_start=1 /product="Matrixin family protein" /protein_id="EOY19223.1" /db_xref="TAIR:AT1G70170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LEL9" /translation="MAYNAISFLSFCTLLVLPLLFQATLADSKDKKPYPFDFLKHLQG CHKGDKVKDIRKLKKYLEQFGYLSYSKNKTHANDDDFDDLLESAIKTYQLNFHLNSNG ALDTETVSKMMMPRCGVADIINGTSGMRSGKKKPHRAAGSKSIHEVSHYAFFPRSPRW PPSKSHLTYAFLPGTRADAVNPVAGAFQTWAANTHFRFSRIDNYRDADITIGFQRRDH GDGNPFDGPGGTLAHAFAPTLGRFHYDADETWSVSARPGTMHLETVALHEIGHLLGLG HSSIENAIMYPSITAGTSKGLARDDIEGIKALYNR" gene complement(14535604..14536196) /locus_tag="TCM_044197" /note="dbxref CacaoGD:Thecc1EG044197" mRNA complement(14535604..14536196) /locus_tag="TCM_044197" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(14535813..14536088) /locus_tag="TCM_044197" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19224.1" /translation="MVLCKVDNNNYSHHLIAEMKYKPRVSSTWRKNGKHHLTTPALVR RVFISALLSSNLGSKCRSARTLRSKSFVGPTKDRRPSGSVNRLKWVH" mobile_element 14537924..14541466 /note="source:CACAO_PIF_E62_scaffold_2 7095 10658" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 14541023..14542625 /note="source:CACAO_Mutator_E592_scaffold_3 7208 8823" /mobile_element_type="transposon:TIR/Mutator" mobile_element 14542636..14544942 /note="source:CACAO_Mutator_E592_scaffold_3 8732 11040" /mobile_element_type="transposon:TIR/Mutator" mobile_element 14545042..14545271 /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2251" /mobile_element_type="transposon:TIR/Mutator" mobile_element 14545086..14545536 /note="source:CACAO_PIF_E62_scaffold_2 16130 16589" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(14545294..14545577) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6847 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14545595..14546732) /note="source:CACAO_Mutator_E1744_scaffold_8 5686 6674" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(14546731..14551025) /note="source:CACAO_Mutator_E1744_scaffold_8 2013 6149" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(14549216..14552978) /note="source:CACAO_PIF_E119_scaffold_3 6785 10411" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 14553249..14556184 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3510 6459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14556913..14559302 /note="source:CACAO_Again_on_E100_scaffold_4 1382 3763" /mobile_element_type="transposon:TIR/hAT" mobile_element 14559315..14559537 /note="source:INTACT95_F143_scaffold_9-int 2741 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14561122..14561201 /note="source:CACAO_M_E5899_F5_scaffold_2 21768 21846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14561298..14562051 /note="source:CACAO_M_E1841_F5_scaffold_1 15889 16664" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14563292..14564704) /locus_tag="TCM_044201" /note="dbxref CacaoGD:Thecc1EG044201" mRNA complement(14563292..14564704) /locus_tag="TCM_044201" /product="Matrixin family protein" /inference="alignment:exonerate- protein:2:ricco:29822.m003413.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046068t1" /inference="similar to AA sequence:ricco:29822.m003413" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4346t1" CDS complement(14563724..14564659) /locus_tag="TCM_044201" /note="dbxref ricco:29822.m003413; paralog of Thecc1EG046068t1" /codon_start=1 /product="Matrixin family protein" /protein_id="EOY19225.1" /db_xref="TAIR:AT1G70170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LEL9" /translation="MAYNAISFLSFCTLLVLPLLFQATLADSKDKKPYPFDFLKHLQG CHKGDKVKDIRKLKKYLEQFGYLSYSKNKTHANDNDFDDLLESAIKTYQLNFHLNSNG ALDTETVSKMMMPRCGVADIINGTSGMRSGKKKPHRAAGSKSIHEVSHYAFFPRSPRW PPSKSHLTYAFLPGTRADAVNPVAGAFQTWAANTHFRFSRIDNYRDADITIGFQRRDH GDGNPFDGPGGTLAHAFAPTIGRFHYDADETWSVSARPGTMHLETVALHEIGHLLGLS HSSIENAIMYPSITAGTSKGLARDDIEGIKALYNR" mobile_element complement(14565265..14565392) /note="source:CACAO_PIF_E119_scaffold_3 1821 1948" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 14568211..14571749 /note="source:CACAO_PIF_E62_scaffold_2 7095 10658" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 14571306..14572925 /note="source:CACAO_Mutator_E592_scaffold_3 7208 8836" /mobile_element_type="transposon:TIR/Mutator" mobile_element 14572905..14575210 /note="source:CACAO_Mutator_E592_scaffold_3 8716 11040" /mobile_element_type="transposon:TIR/Mutator" mobile_element 14575310..14575539 /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2251" /mobile_element_type="transposon:TIR/Mutator" mobile_element 14575353..14575804 /note="source:CACAO_PIF_E62_scaffold_2 16129 16589" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(14575861..14580627) /note="source:CACAO_Mutator_E1744_scaffold_8 2013 6676" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(14580077..14582586) /note="source:CACAO_PIF_E119_scaffold_3 6776 9292" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(14582838..14585768) /note="source:CACAO_M_E57385_F197_scaffold_9 1801 4731" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14587549..14587602) /note="source:CACAO_M_S_E144426_F33_scaffold_10 18011 18054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14591896..14592729 /note="source:INTACT95_F143_scaffold_9-int 2128 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 14593879..14603878 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(14604793..14605486) /note="source:CACAO_M_S_E16721_F36_scaffold_2 3817 4515" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14605534..14616994) /note="source:CACAO_M_S_E16721_F36_scaffold_2 6017 17493" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14615588..14617780 /note="source:INTACT52F_F339_scaffold_1-int 8463 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14618482..14619844 /note="source:CACAO_M_E57346_F74_scaffold_9 2760 4112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14627533..14627781 /note="source:scaffold_5_CACTA_0610 5139 5366" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14628676..14628721 /note="source:INTACT622F_F362_scaffold_4-int 11513 11558" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14633829..14638314) /locus_tag="TCM_044208" /note="dbxref CacaoGD:Thecc1EG044208" mRNA complement(join(14633829..14634445,14634623..14634777, 14637173..14637751,14638021..14638171)) /locus_tag="TCM_044208" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30155.m001604" /inference="alignment:exonerate- protein:2:TAIR:AT3G54290.1" /inference="similar to AA sequence:Phytozome:Glyma20g24560.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4355t1; alternateUTRof:Thecc1EG044208t1; inference alignment:Newbler:10:TSA:cgbaL_g14491t00001" mRNA complement(join(14633834..14634445,14634623..14634777, 14637173..14637755,14638021..14638046)) /locus_tag="TCM_044208" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30155.m001604" /inference="alignment:exonerate- protein:2:TAIR:AT3G54290.1" /inference="similar to AA sequence:Phytozome:Glyma20g24560.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc411t4; alternateUTRof:Thecc1EG044208t1; inference alignment:Newbler:10:TSA:cgbaL_g14491t00001" mRNA complement(join(14633988..14634445,14634623..14634777, 14637173..14637848,14638021..14638244)) /locus_tag="TCM_044208" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30155.m001604" /inference="alignment:exonerate- protein:2:TAIR:AT3G54290.1" /inference="similar to AA sequence:Phytozome:Glyma20g24560.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc411t1; alternateUTRof:Thecc1EG044208t1; inference alignment:Newbler:10:TSA:cgbaL_g14491t00001" mRNA complement(join(14634131..14634445,14634623..14634777, 14637173..14638314)) /locus_tag="TCM_044208" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30155.m001604" /inference="similar to AA sequence:Phytozome:Glyma20g24560.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14491t00001" CDS complement(join(14634191..14634445,14634623..14634777, 14637173..14637749)) /locus_tag="TCM_044208" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19226.1" /db_xref="Phytozome:Glyma20g24560.1" /db_xref="TAIR:AT3G54290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RPT8" /translation="MGNCFAQSKKSTAEIAPYDSIRRFKPVPVVPTVRLYGSASSTLA AYIRFALLHKNLPLQFVPTDKPPCDGEPLLLEIGSETVSGYRETLLQFIEDKFPHPPL GFNMVDTTPLTVQVTWLQHRSITWHLERMVRWAEDLSTRGGRRTVDPAVGSPRMELRK FGKNYSQLLELMVEHAQMEERVVFPVLEMADRGLCKSANEEHARDLPVMNGIKEDIKS IGVMDYGTPAYHEGLSNLSTRLKSLQKHCKEHFDEEEKDLLPLIEATELSEEQQTRVF EQCFDAMKATHSHLLNFFLEGLLPSEAMEYVDLINKCSDKERTASMIQMIAK" CDS complement(join(14634191..14634445,14634623..14634777, 14637173..14637749)) /locus_tag="TCM_044208" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19227.1" /db_xref="Phytozome:Glyma20g24560.1" /db_xref="TAIR:AT3G54290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RPT8" /translation="MGNCFAQSKKSTAEIAPYDSIRRFKPVPVVPTVRLYGSASSTLA AYIRFALLHKNLPLQFVPTDKPPCDGEPLLLEIGSETVSGYRETLLQFIEDKFPHPPL GFNMVDTTPLTVQVTWLQHRSITWHLERMVRWAEDLSTRGGRRTVDPAVGSPRMELRK FGKNYSQLLELMVEHAQMEERVVFPVLEMADRGLCKSANEEHARDLPVMNGIKEDIKS IGVMDYGTPAYHEGLSNLSTRLKSLQKHCKEHFDEEEKDLLPLIEATELSEEQQTRVF EQCFDAMKATHSHLLNFFLEGLLPSEAMEYVDLINKCSDKERTASMIQMIAK" CDS complement(join(14634191..14634445,14634623..14634777, 14637173..14637749)) /locus_tag="TCM_044208" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19228.1" /db_xref="Phytozome:Glyma20g24560.1" /db_xref="TAIR:AT3G54290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RPT8" /translation="MGNCFAQSKKSTAEIAPYDSIRRFKPVPVVPTVRLYGSASSTLA AYIRFALLHKNLPLQFVPTDKPPCDGEPLLLEIGSETVSGYRETLLQFIEDKFPHPPL GFNMVDTTPLTVQVTWLQHRSITWHLERMVRWAEDLSTRGGRRTVDPAVGSPRMELRK FGKNYSQLLELMVEHAQMEERVVFPVLEMADRGLCKSANEEHARDLPVMNGIKEDIKS IGVMDYGTPAYHEGLSNLSTRLKSLQKHCKEHFDEEEKDLLPLIEATELSEEQQTRVF EQCFDAMKATHSHLLNFFLEGLLPSEAMEYVDLINKCSDKERTASMIQMIAK" CDS complement(join(14634191..14634445,14634623..14634777, 14637173..14637749)) /locus_tag="TCM_044208" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19229.1" /db_xref="Phytozome:Glyma20g24560.1" /db_xref="TAIR:AT3G54290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RPT8" /translation="MGNCFAQSKKSTAEIAPYDSIRRFKPVPVVPTVRLYGSASSTLA AYIRFALLHKNLPLQFVPTDKPPCDGEPLLLEIGSETVSGYRETLLQFIEDKFPHPPL GFNMVDTTPLTVQVTWLQHRSITWHLERMVRWAEDLSTRGGRRTVDPAVGSPRMELRK FGKNYSQLLELMVEHAQMEERVVFPVLEMADRGLCKSANEEHARDLPVMNGIKEDIKS IGVMDYGTPAYHEGLSNLSTRLKSLQKHCKEHFDEEEKDLLPLIEATELSEEQQTRVF EQCFDAMKATHSHLLNFFLEGLLPSEAMEYVDLINKCSDKERTASMIQMIAK" mobile_element complement(14639334..14640436) /note="source:MITE_hAT_9 1 1103" /mobile_element_type="transposon:TIR/MITE" mobile_element 14640705..14642119 /note="source:CACAO_M_S_E52577_F51_scaffold_5 1 1413" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14642120..14644684) /note="source:CACAO_M_S_E98366_F278_scaffold_8 399 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14644689..14644833) /note="source:CACAO_M_E57011_F326_scaffold_8 1 119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14644834..14646530 /note="source:CACAO_M_S_E66915_F51_scaffold_6 1430 3108" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14647797..14649635) /locus_tag="TCM_044209" /note="dbxref CacaoGD:Thecc1EG044209" mRNA complement(join(14647797..14647954,14648605..14648824, 14649373..14649635)) /locus_tag="TCM_044209" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031813t1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(14647830..14647954,14648605..14648824, 14649373..14649576)) /locus_tag="TCM_044209" /note="paralog of Thecc1EG031813t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19230.1" /translation="MTFNHIECTIPVLTLPNFDSLFEVEFDISGVGIGAVLLQKKKPI AYLSEKLSDTRRKWTTYDKKSYYVENLSMDFVLGLPRAQKGMDFIFVVVDKFSKMAHF IPCKKTSNASEIGKLFFKEVVRLHVVPKTITSNRDNKFLDKPLYLDVQVNLRLSFSQV EGTDVDSLANNFLEQVTRQKPK" gene 14651718..14652165 /locus_tag="TCM_044210" /note="dbxref CacaoGD:Thecc1EG044210" mRNA 14651718..14652165 /locus_tag="TCM_044210" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS 14651853..14652098 /locus_tag="TCM_044210" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19231.1" /translation="MSLKILFLLSLLRMTMMIERIVRQAKCEASRELFCCKLTKGNFF VRAHDGSKMLGYIEKLRQLGFVMDHQLCVDLVLQYNS" gene complement(14652374..14658776) /locus_tag="TCM_044211" /note="dbxref CacaoGD:Thecc1EG044211" mRNA complement(join(14652374..14657340,14658519..14658776)) /locus_tag="TCM_044211" /product="Translocon at the outer envelope membrane of chloroplasts 159" /inference="alignment:exonerate- protein:2:TAIR:AT4G02510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021209t1" /inference="similar to AA sequence:TAIR:AT4G02510.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4419t2" CDS complement(14653289..14657101) /locus_tag="TCM_044211" /note="paralog of Thecc1EG021209t1" /codon_start=1 /product="Translocon at the outer envelope membrane of chloroplasts 159" /protein_id="EOY19232.1" /db_xref="TAIR:AT4G02510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81283" /translation="MDAQLSASEITSQPLSSSPGSSSPSSFPSFLASNDDSKFATSSV ADHALKANENSKTSDNESGEVKSETTPERPLVADSKEEIQALGKDSDASHVHFDGSNV ILKEDSLGAGDNGLEGFRGEGLMEKLDTEGVGCGAKEGKVEMGSIGDANQSVLAMESR EGGRIGMVENNSILGSGAKQADPVVVEAADHKVVEADILKFSGGEDLVVDATPLVGDV SESKKSEIKGTEVVPVSRSASLENGFDQISHDEKHVLNVYSVPDKNIEPVATNRIDTA ELSACEQNADFDAAKKADSAGGGLLAKLNDLQGEEVIDVLEQAGSENIDEGGGDGSQT VDHSAPPIQLMAAYEAENLDSDSQSRRLVEESHSPKSAELTTVSKAEVSLEGEVEEEN HHQDEEGEIEGSDTDGETEGMIFENTKAAKQFLEELERESGFGSHSGADNSHDHSQRI DGQIVVDSDEEVDTDEEGEGKELLNSAALAALLKAATGAGSDGSNITITSQDGSRLFS VERPAGLGSSLNNAKPAPRSNRPSLFTPSAVTSGRDSDNNLTEEDKRKLEKLQSIRVK FLRLVQRLGHSPEDSIAAQVLYRLALVAGRQTSQLFSLDSAKRTALQLETEGKDDLSF SLNILVLGKIGVGKSATINSIFGEEKVSVHAFEPATAVVKEITGTVDGVKLRIIDTPG LKSSAMEQGANRKVLASIKNFIKKCPPDIVLYVDRLDTQTRDLNDMPLLRSITNSLGS SIWKNAIVTLTHGASAPPDGPSGSPLSYEVFVAQRSHVVQQSIGQAVGDLRLMNPSLM NPVSLVENHPSCRKNRDGHKVLPNGQTWRPQLLLLCYSMKVLSEASSLSKPQDPFDHR KLFGFRVRSPPLPYLLSWLLQSRAHPKLSADQGGENGDSDIDMADLSDSDQEEDADEY DQLPPFKPLRKAQLAKLSKEQRKAYFEEYDYRVKLLQKKQWREELRRMREMKKKGKPA VDEYGYMGEDVDQETGGPAAVPVPLPDMSLPPSFDADNPAYRYRFLEPTSQFLARPVL DTHGWDHDCGYDGVNIEHSLAIGSQFPAAIAVQLTKDKKEFNIHLDSSVSTKHGENGS SMAGFDIQNVGKQLAYIFRGETKFKNLKKNKTAAGFSVTFLGENVATGFKLEDNIVVG NRLVLVGSTGIVRSQGDSAYGANLEVQLRDADFPIGQDQSSLGLSLVKWRGDLALGAN FQSQLSVGRSSKIAVRAGLNNKMSGQITVRTSSSDQLQIALTGILPIVMAIYKSIRPG VSENYSMY" mobile_element complement(14661042..14661514) /note="source:scaffold_8_CACTA_0858 14217 14727" /mobile_element_type="transposon:TIR/CACTA" gene complement(14663256..14671561) /locus_tag="TCM_044212" /note="dbxref CacaoGD:Thecc1EG044212" mRNA complement(join(14663256..14663573,14663654..14663716, 14669440..14669560,14669696..14669894,14670523..14670765, 14671468..14671561)) /locus_tag="TCM_044212" /product="Vesicle-associated membrane protein 727" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g42480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002981t1" /inference="similar to AA sequence:frave:gene00360" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01513c00001" CDS complement(join(14663430..14663573,14663654..14663716, 14669440..14669560,14669696..14669894,14670523..14670712)) /locus_tag="TCM_044212" /note="dbxref frave:gene00360; paralog of Thecc1EG002981t1" /codon_start=1 /product="Vesicle-associated membrane protein 727" /protein_id="EOY19233.1" /db_xref="TAIR:AT3G54300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7X9C5" /translation="MNQKGLIYSFVAKGTVVLAEHTSYSGNFSTIAVQCLQKLPSNSS KFTYSCDGHTFNFLIDNGFVFLVVADESVGRSVPFVFLERVQDDFKQRYGASIKNEGL HPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMNNPEEISKLSKLKAQITEV KGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQNLQMKLMVG GAILVLIIILWLIACGGFKC" mobile_element complement(14664254..14664299) /note="source:scaffold_5_CACTA_0610 5704 5749" /mobile_element_type="transposon:TIR/CACTA" gene complement(14672240..14697168) /locus_tag="TCM_044215" /note="dbxref CacaoGD:Thecc1EG044215" mRNA complement(join(14672240..14672287,14681986..14682647, 14684716..14684781,14697066..14697168)) /locus_tag="TCM_044215" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017442t1" /inference="similar to AA sequence:Phytozome:Glyma09g27740.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" mobile_element complement(14677309..14680258) /note="source:CACAO_M_S_E34046_F60_scaffold_4 3508 6459" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(14682171..14682647,14684716..14684739)) /locus_tag="TCM_044215" /note="paralog of Thecc1EG017442t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19234.1" /db_xref="Phytozome:Glyma09g27740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C142" /translation="MQTCYPSHEKKRHEVGLLYHKDYNENQIPTKARPIQMNKEMEEF CRKEIQDLLNKKLIRKNSLPWSCFTFYVIKNAILERGTPRLVINYKPLNKALEWIRYP NPNKKDLLQKLCNAKIFSKFNTKSRFWQIQIKEKERYKTAFTIPFGQYEWNVMPFGLK NAPSEF" mobile_element complement(14684326..14689444) /note="source:CACAO_M_E72710_F85_scaffold_10 2289 7407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14689545..14691832) /note="source:CACAO_M_E72710_F85_scaffold_10 1 2288" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14692875..14693522) /note="source:CACAO_M_E72709_F15_scaffold_10 1493 2140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14694046..14694304) /note="source:CACAO_M_E72709_F15_scaffold_10 1234 1492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14694606..14695838) /note="source:CACAO_M_E72709_F15_scaffold_10 1 1233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14695839..14695882 /note="source:CACAO_M_E52576_F245_scaffold_7 9522 9556" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14698436..14698480 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2089 2134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14706266..14707318) /note="source:CACAO_M_S_E333710_F85_scaffold_30 1185 2237" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14717703..14719656 /locus_tag="TCM_044217" /note="dbxref CacaoGD:Thecc1EG044217" mRNA join(14717703..14718233,14719356..14719656) /locus_tag="TCM_044217" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(14718047..14718233,14719356..14719417) /locus_tag="TCM_044217" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19235.1" /translation="MCGVGVHTAVMVVCGVEVHMTVMVMCGVGVHMNITTMCSVGVHM TFVEVGGYMHRTMLTILEITIRKDMREINEAIGGTLHG" mobile_element 14718245..14718322 /note="source:CACAO_M_E14113_F106_scaffold_3 13800 13871" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14718255..14718363) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3174 3287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14718830..14718888) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3228 3285" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14718850..14718897 /note="source:INTACT415F_F22_scaffold_4-int 2204 2252" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14719709..14719805 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3180 3277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14719766..14719815) /note="source:CACAO_M_S_E122136_F76_scaffold_10 13651 13701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14721902..14724879) /note="source:CACAO_M_E11415_F328_scaffold_2 216 3186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14724874..14725046) /note="source:INTACT95_F143_scaffold_9-int 7108 7274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14724951..14726176 /note="source:INTACT18_F7_scaffold_4-int 341 1592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14726150..14726385 /note="source:CACAO_on_SS_E90_scaffold_6 12127 12361" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(14726183..14729260) /note="source:CACAO_on_SS_E90_scaffold_6 3702 6816" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(14729026..14729445) /note="source:CACAO_M_E49857_F85_scaffold_7 20685 21072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14729446..14729777) /note="source:CACAO_M_S_E51867_F7_scaffold_4 1081 1411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14729766..14740568) /note="source:CACAO_M_E33228_F15_scaffold_4 1 10792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14740581..14741640 /note="source:INTACT18_F7_scaffold_4-int 9898 10952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14741757..14741789) /note="source:scaffold_3_CACTA_0382 10595 10627" /mobile_element_type="transposon:TIR/CACTA" gene complement(14744669..14751173) /locus_tag="TCM_044221" /note="dbxref CacaoGD:Thecc1EG044221" mRNA complement(join(14744669..14745059,14746513..14746577, 14746753..14746984,14747634..14747724,14748089..14748203, 14749523..14749642,14750954..14751173)) /locus_tag="TCM_044221" /product="AMMECR1 family" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010684001" /inference="similar to AA sequence:ricco:30155.m001609" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc103t4" CDS complement(join(14746779..14746984,14747634..14747724, 14748089..14748203,14749523..14749642,14750954..14751057)) /locus_tag="TCM_044221" /note="dbxref ricco:30155.m001609" /codon_start=1 /product="AMMECR1 family" /protein_id="EOY19236.1" /db_xref="TAIR:AT2G38710.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKN6" /translation="MVSANREMVVFCFDTLVAHYNSEEAPPPAFDEGQHPLFVTWKKV VNGGEPRLRGCIGTLEARCLINGFKDYALTSALRDRRFPPIQAKELPCLECTVSILTD YETANNYFDWEVGKHGIIIEFTDDYNIRRSATYLPEVPAHEGWTKVEAIDSLMRKAGF SGPITESLRKRIKLTRYQSTLFTMHYSDYASYVKATRGAAPSIAGARLSNH" mobile_element complement(14758157..14760386) /note="source:CACAO_M_E58819_F24_scaffold_9 14103 16270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14760170..14760662 /note="source:INTACT162_F157_scaffold_6-int 10205 10688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14760649..14760897) /note="source:CACAO_M_E58819_F24_scaffold_9 3008 3257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14767153..14768565 /note="source:scaffold_8_CACTA_0859 16510 17936" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14771107..14773960) /note="source:CACAO_M_E72699_F15_scaffold_10 1 2854" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14780340..14782163) /note="source:INTACT189_F49_scaffold_5-int 1 1840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14788340..14791332) /note="source:CACAO_M_E57916_F277_scaffold_9 5 3005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14792406..14794552) /note="source:scaffold_2_CACTA_0261 1768 3889" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14798053..14800824) /note="source:CACAO_M_E72692_F333_scaffold_10 1 2772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14802171..14802294) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5675 5786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14802492..14802548) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5683 5739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14803082..14803129) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17933 17978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14803652..14803975) /note="source:CACAO_M_E58601_F7_scaffold_9 9619 9939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14803785..14804723 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18932 19930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14804724..14806561) /note="source:CACAO_M_E11328_F51_scaffold_2 1272 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14806572..14807896) /note="source:CACAO_M_E11328_F51_scaffold_2 1 1302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14811483..14814453) /note="source:CACAO_M_S_E7146_F7_scaffold_2 1 2975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14821495..14823139 /note="source:CACAO_M_S_E1495_F60_scaffold_1 10607 12250" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14826923..14831037 /locus_tag="TCM_044224" /note="dbxref CacaoGD:Thecc1EG044224" mRNA join(14826923..14826992,14830625..14831037) /locus_tag="TCM_044224" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS join(14826957..14826992,14830625..14830825) /locus_tag="TCM_044224" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19237.1" /translation="MLILYLCNLHYMHLFHNQRKISNSKYLPWMIILDGYFFHFLLVL FLKIDPITRHPFKASPTFKYYFTSRWYPSNRNMG" mobile_element 14828469..14829069 /note="source:CACAO_M_E47740_F12_scaffold_6 14694 15295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14829070..14829433 /note="source:CACAO_M_E47740_F12_scaffold_6 713 1080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14830171..14830272 /note="source:INTACT510_F235_scaffold_5-int 5224 5297" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14830343..14845768) /locus_tag="TCM_044225" /note="dbxref CacaoGD:Thecc1EG044225" mRNA complement(join(14830343..14830629,14830999..14831115, 14845317..14845768)) /locus_tag="TCM_044225" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" CDS complement(join(14830479..14830629,14830999..14831115, 14845317..14845408)) /locus_tag="TCM_044225" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19238.1" /translation="MIRKEYKHANDVKLGVGMMRIRMDYVRDNLCGVIRVSVESYPWI MGAQHESREGDYINSYSSRSLPLSNTGAAPVSKEDYVNEHQGENDVDDLESDPLMHMS SDSESSKWSRMVYSKLV" mobile_element 14837084..14837196 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18583 18703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14837185..14839624) /note="source:CACAO_M_S_E101805_F5_scaffold_9 2322 4533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14841084..14841111 /note="source:CACAO_Again_on_S_E95_scaffold_3 79 105" /mobile_element_type="transposon:TIR/hAT" mobile_element 14841112..14842812 /note="source:CACAO_M_E71542_F85_scaffold_10 1 1681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14841284..14844459) /note="source:CACAO_M_S_E122077_F328_scaffold_10 3 3164" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14845532..14845922 /note="source:scaffold_3_CACTA_0382 296 689" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14845931..14848716) /note="source:CACAO_M_E22484_F328_scaffold_3 11522 14254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14848718..14850155 /note="source:scaffold_3_CACTA_0382 702 2099" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14850156..14853105) /note="source:CACAO_M_E72689_F143_scaffold_10 1 2950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14853106..14854361 /note="source:scaffold_3_CACTA_0382 2095 3342" /mobile_element_type="transposon:TIR/CACTA" gene 14854353..14860673 /locus_tag="TCM_044227" /note="dbxref CacaoGD:Thecc1EG044227" mRNA join(14854353..14854363,14860180..14860673) /locus_tag="TCM_044227" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage" mobile_element 14854356..14854517 /note="source:scaffold_3_CACTA_0382 6181 6342" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14855670..14856411) /note="source:scaffold_3_CACTA_0382 11165 11883" /mobile_element_type="transposon:TIR/CACTA" CDS 14860187..14860441 /locus_tag="TCM_044227" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19239.1" /translation="MLLVHDPSFQPKFNLVAWSKGIRAAQTTRTHVYRFCTGVPATML LATASTPFGNVALALQGKPYNYQQMKVEFNQLKDEVLDIK" gene complement(14861803..14871251) /locus_tag="TCM_044228" /note="dbxref CacaoGD:Thecc1EG044228" mRNA complement(join(14861803..14862497,14862637..14862904, 14864306..14864395,14866371..14866508,14871188..14871251)) /locus_tag="TCM_044228" /product="Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400041425" /inference="similar to AA sequence:Phytozome:POPTR_0008s01990.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11476t00001" CDS complement(join(14862143..14862497,14862637..14862904, 14864306..14864395,14866371..14866413)) /locus_tag="TCM_044228" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1" /protein_id="EOY19240.1" /db_xref="Phytozome:POPTR_0008s01990.1" /db_xref="TAIR:AT3G52220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94JX8" /translation="MYHPTRGGVRGGRDQFSWDDVKVDKHRENYLGHSIKAPVGRWQK GKDLHWYARDKKSGGSDVEALSEEIRRVKEEEEQAMREALGLAPKRSSQPQGNRLDKH ELSELVKRGSTAEDLGAGHAEAARVHGLGFSRVPRPWEDPSTLPSSQKEASSETVKVD EHLPSTTNTVEKESEDESSRKGRKHEEKRQEKHEKRERHEKRERYEKRERHEKRERYE KRERHEKRESHDSYEKKRRRKDKEKRRHDSNSD" mRNA complement(join(<14862323..14862497,14862637..14862904, 14864306..14864388,14865076..14865080,14866372..14866529)) /locus_tag="TCM_044228" /product="Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400041425" /inference="similar to AA sequence:Phytozome:POPTR_0010s24660.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1036t1; inference alignment:Newbler:10:TSA:cgbaL_g11476t00001" CDS complement(join(<14862323..14862497,14862637..14862904, 14864306..14864388,14865076..14865080,14866372..14866413)) /locus_tag="TCM_044228" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 2" /protein_id="EOY19241.1" /db_xref="Phytozome:POPTR_0010s24660.1" /db_xref="TAIR:AT3G52220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94JX8" /translation="MYHPTRGGVRGGRDNFWDDVKVDKHRENYLGHSIKAPVGRWQKG KDLHWYARDKKSGGSDVEALSEEIRRVKEEEEQAMREALGLAPKRSSQPQGNRLDKHE LSELVKRGSTAEDLGAGHAEAARVHGLGFSRVPRPWEDPSTLPSSQKEASSETVKVDE HLPSTTNTVEKESEDESSRKGRKHEEKRQEK" mobile_element complement(14867732..14868813) /note="source:CACAO_M_E4368_F316_scaffold_2 4403 5465" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14868841..14871321) /note="source:CACAO_M_E4368_F316_scaffold_2 474 3047" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14871321..14875738 /note="source:CACAO_PIF_E62_scaffold_2 7095 11517" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(14875740..14878645) /note="source:CACAO_PIF_E119_scaffold_3 6779 9679" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 14878637..14879119 /note="source:CACAO_M_E71405_F316_scaffold_10 8247 8730" /mobile_element_type="retrotransposon:LTR/Copia" assembly_gap 14881119..14891118 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(14895589..14897078) /note="source:INTACT1896F_F100_scaffold_16-int 2671 4161" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(14898204..14899118) /note="source:INTACT1896F_F100_scaffold_16-int 1822 2739" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(14899495..14899663) /note="source:INTACT1896F_F100_scaffold_16-int 12261 12429" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(14899891..14901093) /note="source:INTACT1896F_F100_scaffold_16-int 1551 2757" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(14901086..14905412) /note="source:scaffold_4_CACTA_0492 11473 15816" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14911314..14911921) /note="source:scaffold_4_CACTA_0492 7003 7613" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14913611..14913668) /note="source:scaffold_4_CACTA_0492 7951 8010" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14913658..14915795) /note="source:CACAO_M_E58819_F24_scaffold_9 14113 16266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14915795..14916088) /note="source:CACAO_on_S_E58_scaffold_2 9575 9873" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(14915902..14916258) /note="source:CACAO_M_E58819_F24_scaffold_9 3002 3359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14916261..14916751) /note="source:scaffold_4_CACTA_0492 7134 7624" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14916752..14920064) /note="source:CACAO_M_E72655_F85_scaffold_10 1 3313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14920065..14921500 /note="source:INTACT1896F_F100_scaffold_16-int 10083 11546" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(14920215..14924941) /note="source:scaffold_4_CACTA_0492 3843 8010" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14924942..14930998 /note="source:INTACT1896F_F100_scaffold_16-int 1217 7233" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(14930999..14935353) /note="source:scaffold_4_CACTA_0492 1 3842" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14939781..14945231 /note="source:INTACT1896F_F100_scaffold_16-int 1 5361" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 14945227..14946433 /note="source:CACAO_M_E43428_F369_scaffold_5 7772 9005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14946430..14946573) /note="source:CACAO_M_E36454_F98_scaffold_5 4211 4354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14946575..14949214) /note="source:CACAO_M_S_E123337_F319_scaffold_10 1 2640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14949159..14949225) /note="source:CACAO_on_S_E58_scaffold_2 1929 1995" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(14949215..14952420) /note="source:CACAO_M_E5429_F369_scaffold_2 951 4195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14952521..14953456 /note="source:CACAO_M_E34534_F369_scaffold_5 1764 2699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14953457..14958875) /note="source:scaffold_4_CACTA_0492 4118 8010" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14958882..14961594) /note="source:CACAO_M_E34470_F15_scaffold_5 1 2735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14961485..14961610 /note="source:CACAO_M_S_E51867_F7_scaffold_4 8419 8543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14961595..14967835) /note="source:scaffold_4_CACTA_0492 11216 17414" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14967836..14975730) /note="source:CACAO_M_E72142_F322_scaffold_10 1992 9886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14976279..14977522) /note="source:CACAO_M_E72142_F322_scaffold_10 748 1991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14977623..14978369) /note="source:CACAO_M_E72142_F322_scaffold_10 1 747" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14978370..14979995) /note="source:scaffold_4_CACTA_0492 6174 7800" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14979995..14981531) /note="source:CACAO_M_E9677_F7_scaffold_2 7880 9415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14981599..14982626) /note="source:scaffold_4_CACTA_0492 6258 7289" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14982625..14983945) /note="source:CACAO_M_E5800_F12_scaffold_2 10232 11549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14983634..14983985 /note="source:CACAO_M_E5892_F98_scaffold_2 1596 1946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14985647..14986876) /note="source:CACAO_M_E43428_F369_scaffold_5 7740 9013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14986854..14988207) /note="source:scaffold_4_CACTA_0492 11526 12880" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14988208..14988351 /note="source:CACAO_M_E52024_F15_scaffold_7 1 144" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14988452..14990944 /note="source:CACAO_M_E1134_F15_scaffold_1 341 2832" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14997710..15002491) /note="source:scaffold_4_CACTA_0492 11275 16060" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15002492..15002663) /note="source:CACAO_M_S_E5046_F335_scaffold_1 2932 3100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15005492..15006117) /note="source:scaffold_4_CACTA_0492 11950 12580" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15006113..15009242) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1 3100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15009243..15009338 /note="source:CACAO_M_E1841_F5_scaffold_1 25707 25802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15009335..15010245 /note="source:CACAO_M_E5899_F5_scaffold_2 21554 22472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15010246..15010933) /note="source:CACAO_M_S_E85957_F12_scaffold_7 387 1077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15010931..15011474) /note="source:INTACT597_F267_scaffold_2-int 8137 8665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15010933..15011299 /note="source:INTACT642F_F365_scaffold_5-int 5911 6271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15014322..15014711) /note="source:INTACT585_F12_scaffold_8-int 12204 12597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15014712..15014945 /note="source:CACAO_M_S_E31635_F14_scaffold_3 4476 4704" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15016421..15019252) /note="source:CACAO_M_E71811_F15_scaffold_10 1 2832" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15019255..15019320 /note="source:CACAO_M_E43348_F5_scaffold_5 4020 4093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15019310..15021974) /note="source:CACAO_M_E58324_F9_scaffold_9 7663 10243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15022520..15022621) /note="source:INTACT224_F176_scaffold_8-int 2487 2587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15022555..15023171 /note="source:INTACT293_F14_scaffold_5-int 8680 9280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15023172..15028596) /note="source:INTACT546_F245_scaffold_7-int 4182 9626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15028589..15031328) /note="source:CACAO_M_E4631_F369_scaffold_2 1 2707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15031033..15031391 /note="source:scaffold_3_CACTA_0382 1 346" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15031326..15035728) /note="source:INTACT620_F275_scaffold_2-int 636 5041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15035734..15038824) /note="source:CACAO_M_E56633_F15_scaffold_8 1 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15038825..15039463) /note="source:INTACT415F_F22_scaffold_4-int 7384 8024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15040744..15040905) /note="source:INTACT597_F267_scaffold_2-int 8509 8671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15040879..15041761) /note="source:CACAO_M_E5899_F5_scaffold_2 21578 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15041892..15043635) /note="source:CACAO_M_E5899_F5_scaffold_2 19650 21393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15046076..15046264) /note="source:scaffold_9_CACTA_0931 458 646" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15047431..15049308) /note="source:INTACT293_F14_scaffold_5-int 9600 11439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15049292..15050717) /note="source:INTACT280_F60_scaffold_5-int 6795 8212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15050718..15051642) /note="source:INTACT293_F14_scaffold_5-int 8680 9606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15051684..15051833) /note="source:CACAO_M_E43348_F5_scaffold_5 24062 24219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15051705..15051905 /note="source:INTACT293_F14_scaffold_5-int 1133 1334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15055736..15056129) /note="source:CACAO_Mariner_E229_scaffold_9 1439 1833" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(15056128..15056568) /note="source:CACAO_M_E5899_F5_scaffold_2 750 1203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15064714..15064811 /note="source:CACAO_Mariner_E229_scaffold_9 9098 9191" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(15065296..15083157) /locus_tag="TCM_044240" /note="dbxref CacaoGD:Thecc1EG044240" mRNA complement(join(15065296..15065348,15069010..15069194, 15070246..15070546,15070757..15071260,15071535..15072405, 15072474..15072556,15073078..15073218,15073324..15073444, 15083144..15083157)) /locus_tag="TCM_044240" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400057319.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023740t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; weak similarity to DNA/RNA polymerases superfamily protein" mobile_element complement(15066530..15067117) /note="source:CACAO_M_S_E119160_F14_scaffold_9 12760 13347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15067347..15067909 /note="source:INTACT224_F176_scaffold_8-int 4856 5433" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15067910..15075288) /note="source:INTACT223_F175_scaffold_5-int 1599 7245" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(15069012..15069194,15070246..15070546, 15070757..15071260,15071535..15072405,15072474..15072556, 15073078..15073218,15073324..15073406)) /locus_tag="TCM_044240" /note="paralog of Thecc1EG023740t1; weak similarity to DNA/RNA polymerases superfamily protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19242.1" /db_xref="TAIR:ATMG00860.1" /translation="MMEKICKALGCSSFRSVELAAFRLEDMAVHNARAREFETLVQTS SMTVSEYDIKFKQLARYAPYLVSTEEMKIQREASGSRGRGTGTSSQDRPSGSRRQSSV GTLFVCNMDARVLFDPGATHSFISPCFASRLGKYRARREEQLIVSTPSKEVFVAEWEY ESCVVRVEDKDTLVNLVVLDTLDFDVILGMDWLAPCHASVDCYHKLVKFDFPCERSFS IQGDRSNAPTNLISVMSTRKLLRQDCLGYLAVVRDTQVKVGDISQVSVVNKFKDVFSE ELPCLPPEREIEFCIDLIPYSRPISIPPYRMAFAELKELKDQLEDLLDKGFIRPSVSP WGAPVLFVKKKDGSLRLCIDYLQLNKVMVKNKYPLPRIDDLFDQLQGAQCFSKIDLRS GSPSVSFGLKAISFLGHVVSKDGVQVDPKKVEVVEKWPRPTSVTELESFLGLACYYSR FVKDFSKIVTPLTKLIRKDTKFEWSNACENSFKKLKACLTTALVLNLPQDTGGYTVFC DASRIGVRCVLMQHGKVIVYASRQLKRHEHNYPAHDLEMVAIEFALKILRHYLRFLIR EVHSLGHMDVHLEVSEVGALLAHFRVKPMLLDQIKKVQSKDEFVAKALEDPQGRKGKM FTKGIDGVLRYGTRLYVPDSDGLRREILEEVHMAAYVLNNDLTYEEQPVAILDRQVKK LPSKEIALVKVLWRNHTSEEVTWEPKEEMLTKYPHLFNM" mobile_element complement(15075502..15076536) /note="source:INTACT223_F175_scaffold_5-int 6207 7245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15076534..15079205) /note="source:CACAO_M_E49805_F5_scaffold_7 2161 4866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15079256..15080669) /note="source:CACAO_M_S_E99214_F90_scaffold_9 5924 7332" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15080700..15084497) /note="source:CACAO_M_E13220_F12_scaffold_3 7195 12421" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15084573..15090125 /note="source:INTACT447_F13_scaffold_6-int 3933 9472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15088450..15090981 /note="source:CACAO_M_S_E99214_F90_scaffold_9 9939 12481" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15090982..15092094) /note="source:CACAO_M_E43348_F5_scaffold_5 878 2005" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15091004..15096508) /locus_tag="TCM_044243" /note="dbxref CacaoGD:Thecc1EG044243" mRNA complement(join(15091004..15091036,15093045..15093117, 15093211..15093279,15093746..15093828,15093895..15094012, 15094926..15095231,15096387..15096508)) /locus_tag="TCM_044243" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036945001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016752t2" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" mobile_element complement(15092739..15092829) /note="source:CACAO_M_E43348_F5_scaffold_5 9472 9567" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(15093100..15093117,15093211..15093279, 15093746..15093828,15093895..15094012,15094926..15095177)) /locus_tag="TCM_044243" /note="paralog of Thecc1EG016752t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19243.1" /translation="MSKIDNSEVKAATSDSTAGKVIFEPISEDGVFRFDSSANDTDAA YPCLSFINSNEGDVPIMSNKVPLYSPPFEHRLGQQIVKLEIDLRIECRIQFTAPTSFA VITFGPFPSPSAILISLSHAIAIIIYCSRYILLYFSCILYNCLTFVLCLLDSTFSSLS LAFSMAISTLDTWHIYDKT" gene 15096016..15099315 /locus_tag="TCM_044244" /note="dbxref CacaoGD:Thecc1EG044244" mRNA join(15096016..15096142,15098245..15098437, 15098572..15099315) /locus_tag="TCM_044244" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" CDS join(15098427..15098437,15098572..15098812) /locus_tag="TCM_044244" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19244.1" /translation="MVTKTDGHTVPTSACHAYAICCSIEHSADGLTSEWVINCTRALP KTEISKSSNLPSSSAKQTCCFHCSSIVSFLMEHVSGFEN" mobile_element complement(15102877..15113056) /note="source:CACAO_M_S_E122174_F12_scaffold_10 1 10180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15119312..15119490) /note="source:CACAO_Mutator_E206_scaffold_1 10483 10696" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15119510..15122838 /note="source:CACAO_M_E57113_F85_scaffold_8 1 3323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15123206..15123376) /note="source:CACAO_Mutator_E206_scaffold_1 9754 9924" /mobile_element_type="transposon:TIR/Mutator" gene complement(15123336..15124187) /locus_tag="TCM_044247" /note="dbxref CacaoGD:Thecc1EG044247" mRNA complement(join(15123336..15123748,15123996..15124187)) /locus_tag="TCM_044247" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS complement(join(15123542..15123748,15123996..15124061)) /locus_tag="TCM_044247" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19245.1" /translation="MLKKYLIQPKHPWSCSPFMASKRSLGCHDQIVDILSTKVSCPTC SSEHTWRANPKVLAIPRQDLASWKMAARSSESFETLIVLSLQLLHL" mobile_element complement(15126826..15127968) /note="source:CACAO_M_E52081_F13_scaffold_7 4427 5542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15127988..15128290) /note="source:INTACT1784F_F24_scaffold_10-int 4588 4890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15128245..15128292 /note="source:scaffold_6_CACTA_0710 13030 13076" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15128293..15130864 /note="source:CACAO_M_S_E18399_F231_scaffold_3 1 2606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15128866..15130980) /note="source:CACAO_M_E3270_F144_scaffold_1 1 2130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15130981..15133639) /note="source:CACAO_M_S_E145352_F33_scaffold_10 1 2658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15133530..15133657 /note="source:CACAO_M_E36294_F51_scaffold_5 6256 6385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15133633..15135472 /note="source:CACAO_M_E42154_F288_scaffold_5 1144 2983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15135269..15135496) /note="source:CACAO_M_E52239_F256_scaffold_7 8136 8364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15137156..15137228 /note="source:CACAO_M_E11098_F15_scaffold_2 16078 16152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15137458..15138127) /note="source:INTACT280_F60_scaffold_5-int 7355 8021" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15141503..15144408 /locus_tag="TCM_044249" /note="dbxref CacaoGD:Thecc1EG044249" mRNA join(15141503..15142186,15142607..15142778, 15142991..15143172,15143474..15143632,15143717..15144408) /locus_tag="TCM_044249" /product="Trichome birefringence-like 36" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g14630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041593t1" /inference="similar to AA sequence:ricco:29839.m000436" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4494t1" CDS join(15141870..15142186,15142607..15142778, 15142991..15143172,15143474..15143632,15143717..15144014) /locus_tag="TCM_044249" /note="dbxref ricco:29839.m000436; paralog of Thecc1EG041593t1" /codon_start=1 /product="Trichome birefringence-like 36" /protein_id="EOY19246.1" /db_xref="TAIR:AT3G54260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKQ5" /translation="MATNARPKTHLALFFISLFVCFFHGKSSSWLNSEENEDVVMVQT RPQESHGRCDFSVGKWVYDQSYPLYDSNCPYLSTAVTCQRNGRPDSGYEKWKWKPNGC SLPRFDALKFLGKMRRKRIMLVGDSIMRNQWESLVCLVQGVIPTGHKKVTYSGLSMAF HALDFETSIEFSWAPLLVELKKGPQNKRVLHLDMIEENARYWRGVDVLVFDSAHWWTH SDQWSSWDYYMEGKSLYKNMNPMIAYQKGLTTWAKWVDLNLDPRKTRVIFRSMSPRHN RDNGWKCYNQKSPLAFFSHPHVPEQVLVLQGVLRRMRFPVYLHDITTMSAFRRDGHPS VYRRALNQADRQHPREFSSDCSHWCLPGVPDIWNEMLSALL" mobile_element complement(15147077..15147780) /note="source:CACAO_M_E1841_F5_scaffold_1 25723 26516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15147776..15148782) /note="source:CACAO_M_E1841_F5_scaffold_1 21987 22974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15148435..15148929) /note="source:scaffold_4_CACTA_0493 3947 4440" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15149154..15149613) /note="source:CACAO_M_E1841_F5_scaffold_1 8387 8852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15149617..15149736) /note="source:CACAO_M_E1841_F5_scaffold_1 22947 23070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15151583..15151817) /note="source:INTACT189_F49_scaffold_5-int 17862 18056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15155241..15155501 /note="source:CACAO_M_E33977_F20_scaffold_4 11993 12313" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15158403..15173269 /locus_tag="TCM_044253" /note="dbxref CacaoGD:Thecc1EG044253" mRNA join(15158403..15158451,15162959..15163133, 15167894..15168631,15168975..15169024,15169113..15169245, 15169320..15169391,15169627..15169698,15169783..15169854, 15169939..15170118,15170641..15171107,15171197..15171377, 15171465..15171880,15173239..15173269) /locus_tag="TCM_044253" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032598t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.41 coverage" mobile_element 15158677..15158798 /note="source:scaffold_5_CACTA_0591 6352 6474" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15160439..15163237) /note="source:CACAO_M_S_E122163_F15_scaffold_10 1 2799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15163313..15163526) /note="source:scaffold_5_CACTA_0607 13860 14051" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15165893..15167659) /note="source:CACAO_M_E33977_F20_scaffold_4 14823 16543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15167549..15174966 /note="source:CACAO_Mutator_E1410_scaffold_6 6 7494" /mobile_element_type="transposon:TIR/Mutator" CDS join(15168152..15168631,15168975..15169024, 15169113..15169245,15169320..15169391,15169627..15169698, 15169783..15169854,15169939..15170118,15170641..15171107, 15171197..15171314) /locus_tag="TCM_044253" /note="paralog of Thecc1EG032598t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19247.1" /translation="MDHELWFAIGKSKARLSKQEFCLITGLKFGPMLDVFKRPYEVAV DGIHARYWNGEDSVKLQALLDTFREGNFQRPGDATKMALILIANNILFGQDYRRRVTP WLLSLVEDIDAWNVFPWGHYIWKLTLDYLLKGFEVPDLSVTKETRLRYNIYGFAWVIQ LWALETLEPIADEALRECEAKRRSLKEKRASGGTKRMRIAAALVDELMDERDDHGQGS EQPLDHGSTASEPPTGHPQMQSGNDLSFAKATTGPEAPISPTQPQTANEPTYAKATTG PEAPIGPTPSQTANEPLLTQSRTVNDGAVTTRQLRGIMRKHEKDMLELKASIQSLSVE MQTIEDRIVGRILDDLKSQGGPSHGAGLEHDNADDGQHHEPGVDIDDDVLGVDGEHVT HVDDVVEEAVAVDVTLQSDDAKGEHLPPTDAFIDAAAGAIVLYCESTPDAVEIQLLSP ESSAVHHGATEISDPTERAWLKTASNYMASLWQPLVTRRDVRDKIVENYEAFKKEESA RRNVDILGDQGVDFFIILEDPNEEMTSEHIDACLSLLCK" gene 15171465..15434749 /locus_tag="TCM_044254" /note="dbxref CacaoGD:Thecc1EG044254" mRNA join(15171465..15171563,15433687..15433791, 15433881..15434061,15434149..15434475,15434592..15434749) /locus_tag="TCM_044254" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006372t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc2740t1" mobile_element 15176683..15176772 /note="source:INTACT610_F272_scaffold_5-int 13059 13151" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(15178630..15182036) /locus_tag="TCM_044257" /note="dbxref CacaoGD:Thecc1EG044257" mRNA complement(join(15178630..15178762,15179156..15179711, 15179852..15179934,15180070..15180420,15180537..15180689, 15181372..15182036)) /locus_tag="TCM_044257" /product="Type-b response regulator" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038943t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s10280.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(15178674..15178762,15179156..15179711, 15179852..15179934,15180070..15180420,15180537..15180689, 15181372..15181498)) /locus_tag="TCM_044257" /note="paralog of Thecc1EG038943t1" /codon_start=1 /product="Type-b response regulator" /protein_id="EOY19249.1" /db_xref="Phytozome:POPTR_0018s10280.1" /db_xref="TAIR:AT2G25180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IM11" /translation="MEENSVVEVDDNAVHELRVLAIDAQIFSLQYLSVVLHKCNYKVK TTTSAAEALEILRANKYEFDTVLVDVDSATIKGFKLLEIIGLEMYLPVIMVTGDGSLE NIVKGLIHGAVDYIIKPVGVQEIKNSLWHCVSLNNAYWGSQQSMDSQESSDHQSLKPL EHSNASITVEDDKHSTPLDDASSSCQKKRRLVWTPELDAKFVRAVQTLSKGSMVHPKR ILAIMNEPGLNRAKVASHLQKYRMSLKKQQGFDIESVTRYSSTKRNNRRNGKAGGVNA DPLAVPSFNPFHSLEDINSIFLDPIGGGNTVMSQHRIPYGGLLVDPQKPYQSVPYSCL DDPNFQTPDFKSFNYYNYCLGMNIQPHDLGSEPLPGTTSRSPYFHDVGSEASTPSSAP FYPSSNAFLAPETDVAFQSPFAVASAPNLFPVKRSWTTWQSTNLGNLLLPAARRLLSC GE" gene complement(15182252..15191173) /locus_tag="TCM_044258" /note="dbxref CacaoGD:Thecc1EG044258" mRNA complement(join(15182252..15183726,15183822..15184015, 15184104..15184236,15186513..15186624,15187685..15187976, 15188073..15188172,15190958..15191173)) /locus_tag="TCM_044258" /product="Xyloglucan endotransglycosylase 6-like protein" /inference="alignment:exonerate- protein:2:ricco:60263.m000009" /inference="similar to AA sequence:Phytozome:POPTR_0018s10320.1" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(15183249..15183726,15183822..15184015, 15184104..15184236,15186513..15186624,15187685..15187976, 15188073..15188172,15190958..15191130)) /locus_tag="TCM_044258" /codon_start=1 /product="Xyloglucan endotransglycosylase 6-like protein" /protein_id="EOY19250.1" /db_xref="Phytozome:POPTR_0018s10320.1" /db_xref="TAIR:AT4G25810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GXE8" /translation="MYEKEIENQYVRMVQDAMGLEIVLNASHDNDSKSVEEDPNPNAT SFYSLLGDVDEPLWIFDEMVKRDVVHISEDELEQIRDARFAQWFQEYVAERRDKTNPL LLEISHGSGRMVRCFTGYFVNGFKFHILDYGQNRKTMNSRAYVKGSFYNDYERDFYGI LVDIIELEYFNTENKVLLFKCHWFDTVKGVSGDGTSLRSRGRGHGVGIHTPTDLTQRL HVTPLGDRVLAIDAQIFSLQYLCAVLHKCNYNGMPLKLVPGNSAGTVVIAYYLSSKGE TWDKIDFEFLGDISGQPYILHTNVFCQGKGNRKQQFYLWLDPTADFHTYSILWNPQRS VFYVDGIPIREFKNLEFLGVPFPKKQKMRLYIYALAMLMTALLGVNLSIQIGVKPPSR LPIGTSMPMLASGHPDHLIAVQTQTHGFGKSMILQRKGRRNGCRILTWTWYNYCTDTK RVPQSLPTECAYANILSKHSLPSFFPLPPPIWFLLFPFSTQFH" mobile_element complement(15187034..15187163) /note="source:scaffold_9_CACTA_0929 820 949" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15187802..15188308) /note="source:scaffold_9_CACTA_0929 3633 4141" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15188306..15188833) /note="source:scaffold_1_CACTA_0009 2222 2729" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15188835..15191147) /note="source:scaffold_5_CACTA_0613 4627 6982" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15191400..15194321) /note="source:CACAO_M_E71746_F86_scaffold_10 1 2922" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15195237..15196481) /locus_tag="TCM_044259" /note="dbxref CacaoGD:Thecc1EG044259" mRNA complement(15195237..15196481) /locus_tag="TCM_044259" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.17 coverage" CDS complement(15195729..15195992) /locus_tag="TCM_044259" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19251.1" /translation="MRERVATEEKKERKSNNRGEEGKKEQRQRRRKKNKKKERGSSDG AKGERGRRERKKEEEKEKKKEKRRLEERPIVRGEKKWEKRENS" mobile_element complement(15196389..15196737) /note="source:scaffold_9_CACTA_0929 945 1288" /mobile_element_type="transposon:TIR/CACTA" gene 15200488..15209928 /locus_tag="TCM_044260" /note="dbxref CacaoGD:Thecc1EG044260" mRNA join(15200488..15200894,15201090..15201144, 15202131..15202253,15202730..15202824,15205547..15205631, 15205795..15205854,15208441..15208496,15208866..15208971, 15209080..15209148,15209368..15209928) /locus_tag="TCM_044260" /product="ACT domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29839.m000443" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030382t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24480.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11049t00001" mRNA join(<15200703..15200894,15201090..15201144, 15202134..15202253,15202730..15202824,15205547..15205631, 15205795..15205854,15208441..15208496,15208866..15208971, 15209080..15209148,15209368..>15209401) /locus_tag="TCM_044260" /product="ACT domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29839.m000443" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030382t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24480.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12849t00001; inference alignment:Newbler:10:TSA:cgbaB_g11049t00001; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9148t5" CDS join(<15200704..15200894,15201090..15201144, 15202134..15202253,15202730..15202824,15205547..15205631, 15205795..15205854,15208441..15208496,15208866..15208971, 15209080..15209148,15209368..>15209400) /locus_tag="TCM_044260" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030382t1" /codon_start=1 /product="ACT domain-containing protein isoform 2" /protein_id="EOY19253.1" /db_xref="Phytozome:POPTR_0010s24480.1" /db_xref="TAIR:AT5G04740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ23" /translation="ELLSSTSMALPNSLFFSSCSSPVGLRRSGISDSHSAPHFSSIES SIIRKNFSGCGSITNFSAKKNIVYAANEGPNAVSSTSLTDQDADYIPMPIVLIDQDSD SEATIVQLSFGDRLGALIDTMRALKDLRLDVAKGTVLTEGSVTQTKFFITRLDTGRKV EDPDMLERIRLTIINNLLKYHPESSEQLAMGEAFGVKAPEKKLDIDIATRIYVKEDGP KRSLLCIETADRPGLLVEIIKIITDVNIDVESAEIDTEGLVAKDKFHVSYRGAALNSS LSQVLVNCLRYYLR" CDS join(15200725..15200894,15201090..15201144, 15202131..15202253,15202730..15202824,15205547..15205631, 15205795..15205854,15208441..15208496,15208866..15208971, 15209080..15209148,15209368..15209430) /locus_tag="TCM_044260" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030382t1" /codon_start=1 /product="ACT domain-containing protein isoform 1" /protein_id="EOY19252.1" /db_xref="Phytozome:POPTR_0010s24480.1" /db_xref="TAIR:AT5G04740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ23" /translation="MALPNSLFFSSCSSPVGLRRSGISDSHSAPHFSSIESSIIRKNF SGCGSITNFSAKKNIVYAANEGPNAVSSTSLKTDQDADYIPMPIVLIDQDSDSEATIV QLSFGDRLGALIDTMRALKDLRLDVAKGTVLTEGSVTQTKFFITRLDTGRKVEDPDML ERIRLTIINNLLKYHPESSEQLAMGEAFGVKAPEKKLDIDIATRIYVKEDGPKRSLLC IETADRPGLLVEIIKIITDVNIDVESAEIDTEGLVAKDKFHVSYRGAALNSSLSQVLV NCLRYYLRRPETDIDSY" misc_feature join(15205607..15205631,15205795..15206584) /locus_tag="TCM_044260" /note="Gene fragment of Thecc1EG044260t1; dbxref gnl|CacaoGD|Thecc1EG044260t1; quality class is mediumpartial-partof is thecc1eg044260t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc123t4; dbxref CacaoGD:Thecc1EG044261t1" gene 15211018..15211919 /locus_tag="TCM_044263" /note="dbxref CacaoGD:Thecc1EG044263" mRNA 15211018..15211919 /locus_tag="TCM_044263" /product="Germin-like protein 18" /inference="alignment:exonerate- protein:2:ricco:29839.m000437" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022573t1" /inference="similar to AA sequence:ricco:29839.m000437" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12550t00001" CDS 15211264..15211905 /locus_tag="TCM_044263" /note="dbxref ricco:29839.m000437; paralog of Thecc1EG022573t1" /codon_start=1 /product="Germin-like protein 18" /protein_id="EOY19254.1" /db_xref="TAIR:AT3G10080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C7S8D2" /translation="MSLKPALLLAIFLHNYAIIATLASDPDPVQDFCIPQKGIATCRN SSAVTVEDFVFSGIKLPGKFSETGLAAKPVNVNVFPGLNTLGMSFVRADFEVGGINVP HFHPRATEIAFVLQGRVYSGFVDTENRIYAKVIEKGEVMVFPRGLLHFQMNVGDTPAT ILGSFDSQNPGLLRIPNAVFGTGIEEKLLEKAFGLSAKEIANLRRKFAPHELS" mobile_element complement(15212889..15213487) /note="source:scaffold_1_CACTA_0009 13256 13851" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15213191..15215364 /note="source:CACAO_M_E33977_F20_scaffold_4 5405 7576" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15217758..15226608) /locus_tag="TCM_044265" /note="dbxref CacaoGD:Thecc1EG044265" mRNA complement(join(15217758..15218116,15219007..15219680, 15220511..15220624,15222720..15222769,15222928..15223021, 15223901..15223978,15224076..15224151,15224463..15224557, 15224654..15224833,15225530..15225841,15225924..15226467)) /locus_tag="TCM_044265" /product="Amidase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01020788001" /inference="similar to AA sequence:Phytozome:GSVIVT01020788001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05135t00001" CDS complement(join(15219588..15219680,15220511..15220624, 15222720..15222769,15222928..15223021,15223901..15223978, 15224076..15224151,15224463..15224557,15224654..15224833, 15225530..15225841,15225924..15226466)) /locus_tag="TCM_044265" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Amidase family protein isoform 1" /protein_id="EOY19255.1" /db_xref="Phytozome:GSVIVT01020788001" /db_xref="TAIR:AT3G25660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E1ZQQ8" /translation="MLSTIQPSRCLSRFPVHLPTCGRTKSRFLRVVSSAQPVTTAPLA DQSQILSIRDSLLSRHLSAVQVADSYLGRLKQTEPQIGSFLHLSEPDKVLKQAQEIDD KIKRNEEVGPLAGVLVAVKDNICTADMPSTGGSHILDGYRPPFDATAVKRLKDLGAIV VGKTNLDEFGMGSSTEASAFKVTANPWDLSRVPGGSSGGSAAAVSARQCVVSLGSDTG GSVRQPASFCGVAGLKPTYGRVSRFGLMAYASSLDVIGCFGSSVADTGILLHAISGHD ALDATSSKREVPDFTSQFLSASSLKSRPLEGLRVGLIRETVDGGVDSGVKSAIQGAAA HLEQLGSIVTEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQASCDELNVLYE DSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFKAALGENDILISP AAPSAAYKIGEKRNDPLAMYAGDIMTVNVNLAGLPALVLPCGFVEGGSAGLPVGLQMI GAAFDEEKLLKVGHIFEQTLQGHKFVPPLIQDGVFA" mRNA complement(join(15219606..15219680,15220511..15220624, 15222720..15222769,15222928..15223029,15223901..15223978, 15224076..15224151,15224463..15224557,15224654..15224833, 15225530..15225841,15225924..15226608)) /locus_tag="TCM_044265" /product="Glutamyl-tRNA(Gln) amidotransferase subunit A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01020788001" /inference="similar to AA sequence:Phytozome:GSVIVT01020788001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc164t2; inference alignment:Newbler:10:TSA:cgbaB_g05135t00001" mRNA complement(join(15222994..15223021,15223901..15223978, 15224076..15224557,15224654..15224833,15225530..15225841, 15225924..15226608)) /locus_tag="TCM_044265" /product="Glutamyl-tRNA(Gln) amidotransferase subunit A isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01020788001" /inference="similar to AA sequence:Phytozome:GSVIVT01020788001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc164t5; inference alignment:Newbler:10:TSA:cgbaB_g05135t00001" CDS complement(join(15223018..15223029,15223901..15223978, 15224076..15224151,15224463..15224557,15224654..15224833, 15225530..15225841,15225924..15226466)) /locus_tag="TCM_044265" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Glutamyl-tRNA(Gln) amidotransferase subunit A isoform 2" /protein_id="EOY19256.1" /db_xref="Phytozome:GSVIVT01020788001" /db_xref="TAIR:AT3G25660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E1ZQQ8" /translation="MLSTIQPSRCLSRFPVHLPTCGRTKSRFLRVVSSAQPVTTAPLA DQSQILSIRDSLLSRHLSAVQVADSYLGRLKQTEPQIGSFLHLSEPDKVLKQAQEIDD KIKRNEEVGPLAGVLVAVKDNICTADMPSTGGSHILDGYRPPFDATAVKRLKDLGAIV VGKTNLDEFGMGSSTEASAFKVTANPWDLSRVPGGSSGGSAAAVSARQCVVSLGSDTG GSVRQPASFCGVAGLKPTYGRVSRFGLMAYASSLDVIGCFGSSVADTGILLHAISGHD ALDATSSKREVPDFTSQFLSASSLKSRPLEGLRVGLIRETVDGGVDSGVKSAIQGAAA HLEQLGSIVTEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQASCDELNVLYE DSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQCFR" CDS complement(join(15224459..15224557,15224654..15224833, 15225530..15225841,15225924..15226466)) /locus_tag="TCM_044265" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Glutamyl-tRNA(Gln) amidotransferase subunit A isoform 3" /protein_id="EOY19257.1" /db_xref="Phytozome:GSVIVT01020788001" /db_xref="TAIR:AT3G25660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E1ZQQ8" /translation="MLSTIQPSRCLSRFPVHLPTCGRTKSRFLRVVSSAQPVTTAPLA DQSQILSIRDSLLSRHLSAVQVADSYLGRLKQTEPQIGSFLHLSEPDKVLKQAQEIDD KIKRNEEVGPLAGVLVAVKDNICTADMPSTGGSHILDGYRPPFDATAVKRLKDLGAIV VGKTNLDEFGMGSSTEASAFKVTANPWDLSRVPGGSSGGSAAAVSARQCVVSLGSDTG GSVRQPASFCGVAGLKPTYGRVSRFGLMAYASSLDVIGCFGSSVADTGILLHAISGHD ALDATSSKREVPDFTSQFLSASSLKSRPLEGLRVGLIRETVDGGVDSGVKSAIQGAAA HLEQLGSIVTEVSLPSFSLGLPAYYILASSESSSNLSRYDGVR" mobile_element 15227448..15227784 /note="source:CACAO_on_E203_scaffold_7 4764 5124" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(15229461..15232511) /locus_tag="TCM_044266" /note="dbxref CacaoGD:Thecc1EG044266" mRNA complement(join(15229461..15230434,15231260..15231340, 15232258..15232511)) /locus_tag="TCM_044266" /product="F1F0-ATPase inhibitor protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24670.1" /note="quality class is strong-utrpoor, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4522t2" CDS complement(join(15230408..15230434,15231260..15231340, 15232258..15232407)) /locus_tag="TCM_044266" /codon_start=1 /product="F1F0-ATPase inhibitor protein" /protein_id="EOY19258.1" /translation="MAMRSALSRFNSATRYRSMESTRGAIRYLSDDKGRILSEEERAK ENVYIQKMERERLEKKKKAEKERAEKEKEGTQKNTEEAHKG" gene complement(15232782..15234154) /locus_tag="TCM_044267" /note="dbxref CacaoGD:Thecc1EG044267" mRNA complement(join(15232782..15233445,15234011..15234154)) /locus_tag="TCM_044267" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" CDS complement(join(15233056..15233445,15234011..15234139)) /locus_tag="TCM_044267" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19259.1" /translation="MDRERREKTNKAEKEKAERKKKRVLRRCDCLRFFVILNVCLKSF QKYSKKPSSQLEPGSLALSDATGGKKTTQTHLYKFGTKVPTASLLDTAQMSEFACGLT SFTNIAATPSPKLEFYNELKQEVTMMKDSIQNMESSITQILQYVRSVGQSGSSSNPSN KEDMPPRDNGTN" assembly_gap 15234490..15244489 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(15245539..15245871) /note="source:CACAO_M_S_E5210_F12_scaffold_1 8024 8352" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15247733..15253187) /locus_tag="TCM_044268" /note="dbxref CacaoGD:Thecc1EG044268" mRNA complement(join(15247733..15249230,15250361..15250595, 15250709..15251733,15252707..15252753,15252901..15253187)) /locus_tag="TCM_044268" /product="Cationic amino acid transporter 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015845t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24730.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4572t2" CDS complement(join(15248662..15249230,15250361..15250595, 15250709..15251733,15252707..15252749)) /locus_tag="TCM_044268" /note="paralog of Thecc1EG015845t1" /codon_start=1 /product="Cationic amino acid transporter 7" /protein_id="EOY19260.1" /db_xref="Phytozome:POPTR_0010s24730.2" /db_xref="TAIR:AT5G04770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SQZ0" /translation="MQRVVMLRKMSLGAATQNAITLHYTPQTEKTHLSSFTFLMDTQA SSFSSFQSYLRALVHTPGRLARRAGSVSTPYEELSRVRARSGSDMQRSLRWFDLVGLG IGGMLGAGVFVTTGKASRLHAGPAIVISYAIAGFCALLSAFCYTEFAVHMPLAGGAFS YLRVTFGEFAAFLTGANLIMEYVMSNAAVARSFTSYLGAAIGISTAKWRFTVPGLPKG FDEIDVVACTVVLIITLIICYSTKQSSVVNMILTALHILFIGFVIFMGFWRGDWNNFT HPANPDNPSGFFPHGPSGVFNGAAAVYLSYIGYDAVSTMAEEVRDPVKDIPVGVSGSV IIVTILYCLMAASMSKLLPYDMIDVEAPFSAAFSGRSDGWEWVSRVIGVGASFGILTS LLVAMLGQARYMCVIGRSSVVPAWFARVHHKTSTPVNASAFLGIFTAAIALFTDLSVL LNLVSIGTLFVFYMVANAVIYRRYVVVGTTKPWSTLSFLCLLSLTSIIFTLLWHFAPP GKPKAFVLGTCVVIAISILQIFRCMVPQARKPDFWGVPFMPWLPSISIFLNIFLMGSL GGPSYVRFGFFSALAVLVYVLYSVHASFDAEVDGSFGQNNGEILKESAESEHPSHKV" mobile_element complement(15254028..15254143) /note="source:CACAO_M_E48538_F49_scaffold_6 12140 12261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15254241..15254300) /note="source:INTACT1818F_F49_scaffold_11-int 19860 19924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15255733..15256154 /note="source:CACAO_M_S_E99646_F215_scaffold_9 436 856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15258024..15258243) /note="source:INTACT1818F_F49_scaffold_11-int 1 210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15258244..15258934 /note="source:CACAO_M_E3884_F22_scaffold_1 13129 13778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15260172..15260902) /note="source:scaffold_8_CACTA_0860 11170 11885" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15261082..15261159) /note="source:scaffold_8_CACTA_0860 11072 11156" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15261273..15262668) /note="source:scaffold_5_CACTA_0585 9474 11643" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15265871..15266080) /note="source:CACAO_M_E84523_F247_scaffold_10 4872 5081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15265992..15267780 /note="source:INTACT540_F242_scaffold_5-int 3625 5418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15267253..15267720) /note="source:INTACT469_F79_scaffold_2-int 51 2982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15267721..15270216) /note="source:CACAO_M_E69554_F279_scaffold_9 1 2482" /mobile_element_type="retrotransposon:LTR/Copia" gene 15268715..15273570 /locus_tag="TCM_044269" /note="dbxref CacaoGD:Thecc1EG044269" mRNA join(15268715..15268932,15270204..15270290, 15270366..15270502,15272518..15273570) /locus_tag="TCM_044269" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.15 coverage" CDS join(15268849..15268932,15270204..15270290, 15270366..15270502,15272518..15272644) /locus_tag="TCM_044269" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19261.1" /translation="MLDHYKINLGSVYMHDMICNLSDYRLNAVELYKGLVVTTPLREG FIAEYEYRAGVVQLSPNYASVDYHYKKVKFEYLEEKPFYIKGDRSIVSNSIVLAMTTS RMIKSTHFLLVKTTYGAAQYARLYIDEIVHGVLVTVVSDRGT" mobile_element complement(15278158..15278251) /note="source:scaffold_5_CACTA_0585 6275 6359" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15278179..15278329 /note="source:scaffold_5_CACTA_0585 6226 6395" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15278463..15278594 /note="source:CACAO_M_E23991_F4_scaffold_4 4951 5081" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15279048..15279169) /note="source:INTACT695_F301_scaffold_5-int 11838 11952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15281561..15281690) /note="source:scaffold_5_CACTA_0585 6280 6502" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15282288..15282402 /note="source:INTACT19F_F94_scaffold_1-int 14303 14400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15282860..15282931) /note="source:scaffold_5_CACTA_0585 6435 6506" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15285247..15285313 /note="source:INTACT1373F_F385_scaffold_8-int 21055 21118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15285256..15286918) /note="source:CACAO_M_E48538_F49_scaffold_6 12220 13659" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15288985..15289034 /note="source:CACAO_M_E5326_F22_scaffold_2 3443 3492" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15289614..15292512 /locus_tag="TCM_044270" /note="dbxref CacaoGD:Thecc1EG044270" mRNA 15289614..15292512 /locus_tag="TCM_044270" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034655001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029817t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034655001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1249t1" CDS 15289999..15291888 /locus_tag="TCM_044270" /note="paralog of Thecc1EG029817t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /protein_id="EOY19262.1" /db_xref="Phytozome:GSVIVT01034655001" /db_xref="TAIR:AT5G04780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ19" /translation="MNTLYRYRRNLYHVYTYTFLSNNFSTLGVASAAAAELETPTPED LSWRKMCCTQVSYLQTVLQLCARNRAAIPGKACHALTIHFGLQADTITSNILINMYSK SGLLSCARKVFDEMPARSLVSWNTLIGSYAQRGQAQEALTLFMFMQKGGNPFSEFTIS SVLCACVANCAVFECKQLHGFAIKTAIDSNMFVGTALVDVYAKSGLVKDASWVFESMQ ERSVVTWSCMMVGYVQNELFEEALLLFHRAQIMELEHDQFMFSSIICACAGLAALIEG KQVHAIISKTGFGSNIFVASSLIDMYAKCGSVEEAYTVFTGIEGKSVVSWNTMISGFA KHARALEAMISFEKMQQVGLYPNEVTYISLFFACSHMGLVDEAKRYFDLMIREQNVSA NVIHYSCMVDILGRAGKISEAYDVIERMPFDATASMWGSLLACCRFHGNLKLAEVAAK HLFEMEPDNAGNHILLSNIYAANKKWEEVARARKFLKESMVKKERGKSWIAIRDKIHK FMVGEINHPRIAEIYSKLDNLMEEMKILGYKVEIEHDLHDVEESRKQEHLKQHSEKLA LAFGLLCLPPTAPIRIMKNLRICGDCHSFMKHASSITQREIIVRDINRFHHFRNGCCS CGDFW" mobile_element complement(15292420..15293904) /note="source:CACAO_M_E71745_F215_scaffold_10 1 1485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15295720..15295777) /note="source:scaffold_8_CACTA_0860 5298 5354" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15296871..15296987) /note="source:CACAO_M_E23991_F4_scaffold_4 4128 4231" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15299051..15299109) /note="source:scaffold_8_CACTA_0860 500 559" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15300127..15300206) /note="source:INTACT136_F150_scaffold_10-int 8223 8300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15301090..15303457 /note="source:scaffold_4_CACTA_0493 2831 5253" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15301921..15303690) /note="source:INTACT713_F309_scaffold_9-int 1023 2852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15306029..15307820) /note="source:INTACT336_F12_scaffold_2-int 13334 15103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15307936..15310888) /note="source:CACAO_M_E71742_F33_scaffold_10 1 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15310890..15311251) /note="source:INTACT47_F12_scaffold_3-int 9622 9982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15310990..15318235 /note="source:INTACT1820F_F94_scaffold_12-int 1728 8832" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15319981..15320827) /locus_tag="TCM_044272" /note="dbxref CacaoGD:Thecc1EG044272" mRNA complement(join(15319981..15320545,15320640..15320827)) /locus_tag="TCM_044272" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24780.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS complement(join(15320168..15320545,15320640..15320795)) /locus_tag="TCM_044272" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19263.1" /translation="MASQQNQQGMSSSLDASADFTPKNCLNIDEFLGEFNKSYHLNSS SIELDDNEKCHKGEARKRSFMEMENGEEEQRGSLDLNLSLTPLGLLQQKDLCGNQSEI SSTSSCMPVNLDSSSSEEVEFSNKTIEDPSLILMGCSHCLIYVMVSEINPKCPKCNSS ILIDIFRHRLGKKSRKT" gene 15332200..15343704 /locus_tag="TCM_044274" /note="dbxref CacaoGD:Thecc1EG044274" mRNA join(15332200..15332338,15333446..15333848, 15337639..15337669,15338023..15338442,15338824..15340588, 15340679..15341063,15341929..15342072,15343681..15343704) /locus_tag="TCM_044274" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400044090.25" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003425t1" /inference="similar to AA sequence:Phytozome:Glyma04g32860.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; weak similarity to DNA/RNA polymerases superfamily protein" mobile_element complement(15332475..15332989) /note="source:CACAO_M_E12224_F51_scaffold_3 2575 3091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15332965..15334921 /note="source:INTACT99F_F96_scaffold_2-int 7351 9306" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15335549..15338501 /note="source:INTACT99F_F96_scaffold_2-int 2303 5245" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15336868..15337452 /locus_tag="TCM_044276" /note="dbxref CacaoGD:Thecc1EG044276" mRNA join(15336868..15337252,15337353..15337452) /locus_tag="TCM_044276" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013205t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS join(15336907..15337252,15337353..15337423) /locus_tag="TCM_044276" /note="paralog of Thecc1EG013205t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19265.1" /translation="MTVSEYDIKFTQLARYAPYLVSTEEMKIQRFVDGLVEPLFRAVA SRDFTTYSAAVDRAQRIEMRTSESRAARERAKRGKTEGYQGRRDFSSGGSSSSRQGPQ RDSRLPQQGSDAPDDIVDGASLLQKLVTGAVNLGIL" CDS join(15337655..15337669,15338023..15338442, 15338824..15340588,15340679..15341061) /locus_tag="TCM_044274" /note="paralog of Thecc1EG003425t1; weak similarity to DNA/RNA polymerases superfamily protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19264.1" /db_xref="Phytozome:Glyma04g32860.1" /db_xref="TAIR:ATMG00860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BR83" /translation="MPWSQGDRSNAPTNLISVISARRLLRQGCIGYLAVVKDSQAKIG DVTQVSVVKEFVDVFPEELPGLPPEREVEFCIDLIPDTRPISIPPYRMAPAELKELKD QLEDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRQLNKCEFWLESVAFLGHVV SKEGIRVDTKKIEAVEKWPRPTSVTEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTRKD TKFEWSDACENSFEKLKACLTTAPVLSLPQGTRGYTVFCDASGVGLGCVLMQHGKVIA YASRQLKRHEQNYPIHDLEMAAIVFALKIWRHYLYGETCEIYMDHKSLKYIFQQRDLN LRQRRWMELLKDYDCTILYHPGKANVVADALSRKSMGSLAHISIGRRSLVREIHSLGD IGVRLEVAETSALLAHFRVRPILMDKIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDG VLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEF VSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDR LTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALG TKLDFSTAFHPQTDGQSERTIKTLEDMLRACVIDLGVKWEQYLPLVEFAYNNSFQTSI QMAAFEALYGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQKMLTAQRVMRFGK KGKLSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYET IQLQNDLTYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSEEVTWEAKDEMRTKHPH LFDM" mobile_element 15338813..15341520 /note="source:CACAO_M_E85507_F96_scaffold_11 5076 7776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15341621..15342313 /note="source:CACAO_M_E42342_F98_scaffold_5 414 1106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15342414..15343946 /note="source:CACAO_M_E85507_F96_scaffold_11 903 2453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15344047..15346630) /note="source:CACAO_M_E24682_F51_scaffold_4 1 2601" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15350451..15351019 /note="source:CACAO_M_S_E1495_F60_scaffold_1 475 1086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15353572..15353648 /note="source:INTACT224_F176_scaffold_8-int 2475 2552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15353649..15354127 /note="source:CACAO_M_S_E1495_F60_scaffold_1 17229 17709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15360483..15363050) /note="source:CACAO_M_E52239_F256_scaffold_7 1633 6195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15360611..15362723 /note="source:CACAO_M_E42395_F3_scaffold_5 15059 17159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15366657..15367585 /note="source:INTACT280_F60_scaffold_5-int 151 1124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15372175..15374969) /note="source:CACAO_M_E71729_F15_scaffold_10 1 2767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15379070..15381767) /note="source:CACAO_M_S_E122145_F231_scaffold_10 1 2698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15387388..15387424) /note="source:CACAO_M_S_E6055_F310_scaffold_2 17019 17055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15391220..15391364 /note="source:INTACT189_F49_scaffold_5-int 15888 16039" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15391689..15392269 /note="source:INTACT414_F210_scaffold_5-int 9329 9906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15392461..15392612 /note="source:INTACT414_F210_scaffold_5-int 10312 10461" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15393930..15406625) /locus_tag="TCM_044279" /note="dbxref CacaoGD:Thecc1EG044279" mRNA complement(join(15393930..15395098,15395611..15395740, 15395880..15396175,15396689..15397117,15399568..15399627, 15401524..15401677,15403778..15403918,15404419..15404546, 15405241..15406625)) /locus_tag="TCM_044279" /product="Pentatricopeptide repeat-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034651001" /inference="similar to AA sequence:Phytozome:POPTR_0008s01830.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b042714t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc42t9" mRNA complement(join(15393930..15395098,15395611..15395740, 15395880..15396175,15396689..15397117,15399568..15399627, 15401524..15401677,15402611..15402697,15403778..15403918, 15404419..15404546,15405241..15406625)) /locus_tag="TCM_044279" /product="Pentatricopeptide repeat-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034651001" /inference="similar to AA sequence:Phytozome:POPTR_0010s24770.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc42t9" CDS complement(join(15394571..15395098,15395611..15395740, 15395880..15396175,15396689..15397117,15399568..15399627, 15401524..15401677,15403778..15403918,15404419..15404546, 15405241..15406122)) /locus_tag="TCM_044279" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat-containing protein isoform 3" /protein_id="EOY19268.1" /db_xref="Phytozome:POPTR_0008s01830.1" /db_xref="TAIR:AT5G04810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKM1" /translation="MEGFLSLPTSQCSTSSLFTSRPHSSSAATSVSFSLQPPPQPPES NLRRPKSIKSSPKPKVPSNPLKNLTTTISTTTTTTSNNPSHVPAPIESEHTTHPLASK LRLSSKFFPPPPPPPSVLQDTQNETLISEPEAPSPQPQNPEKFRQDGKIFIGNLPNWI RKHEVAEFFRQFGPIKDVILIKAHNEIHRNAGFGFVIYGGPPPLAEKSAMKAVEFDGV EFHGRILTVKLDDGKRLMEKAEERARWVEGYQVQDCNNKSKWHQEREGSRKLFRKILE SEPENWQKVVTAFERITKPARREFGLMVNYYARRGDMHRARETFERMRARGIEPTSHV YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMTLVTYSILVGGFAKIGNSDQTCNMERA EALVREMEEEGIDAPIDIYHTMMDGYTMIGNEEKCLIVFERLKECGFIPSVISYGCLI NLYSKIGKVSKALEVSKMMECDGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLVEDG LKPDVVLYNNIIRAFCGMGNMDRAIHTVKEMLKERHRPTTRTFMPIIHAFARAGEMRR AWEVFDVMRRSGCSPTVHTFNALILGLTEKRQMEKAVEILDEMTLAGISPNEHTYTTI MHGYASLGDTAKAFGYFTKLRNEGLEIDVYTYEALLKACCKSGRMQSALAVTKEMSAR KIPRNTFVYNILVDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDML RAMKTIQEMDAIGVKPNVKTYTTLIHGWARASLPEKALKCFEEMKLAGLKPDKAVYHC LMTSLLSRATFAEAYIYSGVLSVCREMIDSGLTVDMGTAVHWSRCLRKIERTGGELTE ALQKTFPPDWSSYHTIAANSDTETDDELESDHDDNDVYFANVTEGDHDLDEDATDYGY E" CDS complement(join(15394571..15395098,15395611..15395740, 15395880..15396175,15396689..15397117,15399568..15399627, 15401524..15401677,15402611..15402697,15403778..15403918, 15404419..15404546,15405241..15406122)) /locus_tag="TCM_044279" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat-containing protein isoform 1" /protein_id="EOY19266.1" /db_xref="Phytozome:POPTR_0010s24770.1" /db_xref="TAIR:AT5G04810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKM1" /translation="MEGFLSLPTSQCSTSSLFTSRPHSSSAATSVSFSLQPPPQPPES NLRRPKSIKSSPKPKVPSNPLKNLTTTISTTTTTTSNNPSHVPAPIESEHTTHPLASK LRLSSKFFPPPPPPPSVLQDTQNETLISEPEAPSPQPQNPEKFRQDGKIFIGNLPNWI RKHEVAEFFRQFGPIKDVILIKAHNEIHRNAGFGFVIYGGPPPLAEKSAMKAVEFDGV EFHGRILTVKLDDGKRLMEKAEERARWVEGYQVQDCNNKSKWHQEREGSRKLFRKILE SEPENWQKVVTAFERITKPARREFGLMVNYYARRGDMHRARETFERMRARGIEPTSHV YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMTLVTYSILVGGFAKIGNSEAADHWFKE AKERHTPLNAIIYGNIIYAHCQTCNMERAEALVREMEEEGIDAPIDIYHTMMDGYTMI GNEEKCLIVFERLKECGFIPSVISYGCLINLYSKIGKVSKALEVSKMMECDGIKHNMK TYSMLINGFLKLKDWANAFAIFEDLVEDGLKPDVVLYNNIIRAFCGMGNMDRAIHTVK EMLKERHRPTTRTFMPIIHAFARAGEMRRAWEVFDVMRRSGCSPTVHTFNALILGLTE KRQMEKAVEILDEMTLAGISPNEHTYTTIMHGYASLGDTAKAFGYFTKLRNEGLEIDV YTYEALLKACCKSGRMQSALAVTKEMSARKIPRNTFVYNILVDGWARRGDVWEAADLM QQMKQEGVQPDIHTYTSFINACCKAGDMLRAMKTIQEMDAIGVKPNVKTYTTLIHGWA RASLPEKALKCFEEMKLAGLKPDKAVYHCLMTSLLSRATFAEAYIYSGVLSVCREMID SGLTVDMGTAVHWSRCLRKIERTGGELTEALQKTFPPDWSSYHTIAANSDTETDDELE SDHDDNDVYFANVTEGDHDLDEDATDYGYE" mRNA complement(join(15395070..15395300,15395611..15395740, 15395880..15396175,15396689..15397117,15399568..15399627, 15401524..15401677,15402611..15402697,15403778..15403918, 15404419..15404546,15405241..15406137)) /locus_tag="TCM_044279" /product="Pentatricopeptide repeat-containing protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene09197" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034651001" /inference="similar to AA sequence:ricco:30155.m001644" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc41t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc42t9" CDS complement(join(15395262..15395300,15395611..15395740, 15395880..15396175,15396689..15397117,15399568..15399627, 15401524..15401677,15402611..15402697,15403778..15403918, 15404419..15404546,15405241..15406122)) /locus_tag="TCM_044279" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30155.m001644" /codon_start=1 /product="Pentatricopeptide repeat-containing protein isoform 2" /protein_id="EOY19267.1" /db_xref="TAIR:AT5G04810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WMY5" /translation="MEGFLSLPTSQCSTSSLFTSRPHSSSAATSVSFSLQPPPQPPES NLRRPKSIKSSPKPKVPSNPLKNLTTTISTTTTTTSNNPSHVPAPIESEHTTHPLASK LRLSSKFFPPPPPPPSVLQDTQNETLISEPEAPSPQPQNPEKFRQDGKIFIGNLPNWI RKHEVAEFFRQFGPIKDVILIKAHNEIHRNAGFGFVIYGGPPPLAEKSAMKAVEFDGV EFHGRILTVKLDDGKRLMEKAEERARWVEGYQVQDCNNKSKWHQEREGSRKLFRKILE SEPENWQKVVTAFERITKPARREFGLMVNYYARRGDMHRARETFERMRARGIEPTSHV YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMTLVTYSILVGGFAKIGNSEAADHWFKE AKERHTPLNAIIYGNIIYAHCQTCNMERAEALVREMEEEGIDAPIDIYHTMMDGYTMI GNEEKCLIVFERLKECGFIPSVISYGCLINLYSKIGKVSKALEVSKMMECDGIKHNMK TYSMLINGFLKLKDWANAFAIFEDLVEDGLKPDVVLYNNIIRAFCGMGNMDRAIHTVK EMLKERHRPTTRTFMPIIHAFARAGEMRRAWEVFDVMRRSGCSPTVHTFNALILGLTE KRQMEKAVEILDEMTLAGISPNEHTYTTIMHGYASLGDTAKAFGYFTKLRNEGLEIDV YTYEALLKACCKSGRMQSALAVTKEMSARKIPRNTFVYNILVDGWARRGDVWEAADLM QQMKQEGVQPDIHTYTSFINACCKAGDMLKSEENERDFICV" gene complement(15410183..15411266) /locus_tag="TCM_044280" /note="dbxref CacaoGD:Thecc1EG044280" mRNA complement(join(15410183..15410932,15410994..15411266)) /locus_tag="TCM_044280" /product="Receptor-like protein kinase-related family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s06720.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029030t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s02720.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4439t1" CDS complement(join(15410452..15410932,15410994..15411181)) /locus_tag="TCM_044280" /note="paralog of Thecc1EG029030t1" /codon_start=1 /product="Receptor-like protein kinase-related family protein, putative" /protein_id="EOY19269.1" /db_xref="Phytozome:POPTR_0007s02720.1" /db_xref="TAIR:AT3G22060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HIL6" /translation="MSSSRFASLLYLLTFAFLLPAAFGVNPIFHFCSNAGNFSAYDPY EGNLKQAHLLPLISSSSLRGDVSTPDCQTCVVEAGNEIRKLCPSTKGAIIWYDNCLLK YSDTEFFGQIDNKNMFYLWNGRVVSDPQSFNQKTKELLSQLANEAYATPKLYATRETE LYGSPKLYGLTQCTRDLSSSDCKKCLDGIIGKLPSCCDGQEGGRVVGGSCNFRYEIYP FVKA" mobile_element complement(15416840..15419618) /note="source:CACAO_M_E71725_F79_scaffold_10 1 2779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15419619..15420110) /note="source:CACAO_M_E14113_F106_scaffold_3 18695 19189" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15420635..15422203) /note="source:CACAO_M_E49539_F76_scaffold_7 1219 2798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15422187..15423340) /note="source:CACAO_M_E57291_F76_scaffold_8 321 1459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15423331..15423379 /note="source:CACAO_M_S_E99001_F76_scaffold_9 5053 5223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15423380..15423497 /note="source:CACAO_M_E71405_F316_scaffold_10 8375 8491" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15423489..15423724) /note="source:CACAO_M_E33835_F76_scaffold_4 230 438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15423675..15423896 /note="source:CACAO_M_S_E99001_F76_scaffold_9 5015 5456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15423897..15424223 /note="source:CACAO_M_E11925_F316_scaffold_2 7619 7958" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15428706..15435242) /note="source:CACAO_M_E33977_F20_scaffold_4 9943 16550" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(15434160..15434475,15434592..15434623) /locus_tag="TCM_044254" /note="paralog of Thecc1EG006372t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19248.1" /translation="MLHTEFPTEDARATMQIPDELQGYVEGERPTYAKKWEDVDFILA PCNVGGHWVVVKIYLVRWTIKVVDSARTLDAKDNGVRAGQMTPLTTMMPFICHQVGYF NNIPYFAIKKDRN" mobile_element 15435656..15439780 /note="source:CACAO_Mutator_E1410_scaffold_6 5053 9151" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15439699..15440417 /note="source:scaffold_1_CACTA_0009 13127 13829" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15441456..15441719) /note="source:CACAO_M_E14658_F15_scaffold_3 2827 3090" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15442744..15444151) /note="source:CACAO_M_E59156_F15_scaffold_9 395 1800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15444252..15444593 /note="source:CACAO_M_E964_F15_scaffold_1 2760 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15444814..15445069 /note="source:CACAO_on_S_E390_scaffold_9 15131 15391" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15444839..15447793) /note="source:CACAO_M_E71723_F228_scaffold_10 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15451270..15454704 /locus_tag="TCM_044283" /note="dbxref CacaoGD:Thecc1EG044283" mRNA join(15451270..15452476,15454583..15454704) /locus_tag="TCM_044283" /product="Ovate family protein 13" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022847t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034649001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11353t00001" CDS 15451336..15452181 /locus_tag="TCM_044283" /note="paralog of Thecc1EG022847t1" /codon_start=1 /product="Ovate family protein 13" /protein_id="EOY19270.1" /db_xref="Phytozome:GSVIVT01034649001" /db_xref="TAIR:AT5G04820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKM2" /translation="MIGPTCKPFPFHLPFHLLTSPLKLSPSILSAPINAPTSKAQLLT NQTKKKKRKPILMGKKMKLPALFKHKEAREPWQWPSCKHPKTLSFRAGDDVFKTVNSV FFEPIDGVETPESWFTKSPESASFSTESDQEFDGESLEMVVRGARSERLFFEPGSDTS SILEEAKTGGLPFKESVVLAMESADPYVDFRKSMEEMVETHGLKDWKILEELLGWYLQ VNGKTNHGFIIGAFIDLLVGLNATSCSDSTSYSSAVSSLPSSPLCSTQGDDNEIEEEE NVRLP" mobile_element complement(15453382..15472077) /note="source:CACAO_M_S_E122136_F76_scaffold_10 1 18696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15472468..15475822 /note="source:CACAO_M_E42343_F106_scaffold_5 1324 3507" /mobile_element_type="retrotransposon:LTR/Copia" gene 15475285..15478250 /locus_tag="TCM_044286" /note="dbxref CacaoGD:Thecc1EG044286" mRNA join(15475285..15475476,15477173..15477917, 15478003..15478250) /locus_tag="TCM_044286" /product="Retrotransposon protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0174s00220.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019329t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s22330.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00412t00002_G2" CDS join(15475411..15475476,15477173..15477917, 15478003..15478025) /locus_tag="TCM_044286" /note="paralog of Thecc1EG019329t1" /codon_start=1 /product="Retrotransposon protein, putative" /protein_id="EOY19271.1" /db_xref="Phytozome:POPTR_0002s22330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D3IVT9" /translation="MVLPHMDAAPPIAMDATALWKEEKKSYVIDTPIPPVPVADASAE DKEAYQCHKDDDDQAACMMLASMTLELQKQHEHMDVQSMILHLRELFDREGRIERYEI SKELFRCKMAEGSSVRPHVLKMIGLIERLRQLGLAMDHELSIDLVLQSLPDSFSQFML NFHMNRLEATLPELLNMLDTAKRSIRKDKGSLLLLSFSKAHTKQQKKKAQKGKKVKSQ NEKALKPKGGVKKDKETDICHHCGKLGHWRRNCKEYLATVSKKKKLIEVSDSGTKDKD E" mobile_element 15475923..15476086 /note="source:CACAO_M_E42343_F106_scaffold_5 3519 3682" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15476187..15480919) /note="source:CACAO_M_E9386_F106_scaffold_2 787 6617" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15481280..15481647) /note="source:CACAO_M_E51854_F82_scaffold_7 9868 10236" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15483369..15485329) /note="source:CACAO_M_E44899_F328_scaffold_6 9374 11377" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15485505..15488458) /note="source:CACAO_M_E71715_F33_scaffold_10 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15488459..15489616 /note="source:CACAO_M_S_E5285_F300_scaffold_1 10529 11688" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15489617..15490146) /note="source:CACAO_M_S_E82995_F85_scaffold_6 4572 5101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15490125..15490242) /note="source:CACAO_M_S_E100312_F82_scaffold_9 6476 6599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15490147..15490540 /note="source:CACAO_M_E3109_F15_scaffold_1 7531 7924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15490641..15491182 /note="source:CACAO_M_S_E119191_F3_scaffold_9 6600 7142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15499099..15499675 /note="source:CACAO_M_E22398_F15_scaffold_3 7522 8097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15504540..15505942 /note="source:CACAO_M_E11481_F33_scaffold_2 1503 2911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15506484..15506839) /note="source:CACAO_M_E58894_F15_scaffold_9 1 356" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15506696..15506857 /note="source:scaffold_8_CACTA_0859 11962 12125" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15506841..15507232) /note="source:INTACT585_F12_scaffold_8-int 3811 4201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15507333..15508338 /note="source:CACAO_M_E58012_F15_scaffold_9 1385 2391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15508335..15509027 /note="source:INTACT51F_F15_scaffold_1-int 10339 11031" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15509373..15509969) /note="source:CACAO_M_E44899_F328_scaffold_6 904 1495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15509970..15511350) /note="source:CACAO_M_E53587_F207_scaffold_8 10585 11967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15511742..15513096) /note="source:INTACT646F_F95_scaffold_5-int 6041 7394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15513197..15513520 /note="source:CACAO_M_E44874_F85_scaffold_6 3010 3332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15513521..15514429) /note="source:CACAO_M_E44899_F328_scaffold_6 1 908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15514430..15515751 /note="source:CACAO_M_E49195_F17_scaffold_6 224 1526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15517366..15520526) /note="source:CACAO_M_S_E122122_F42_scaffold_10 5203 8363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15520627..15525031) /note="source:CACAO_M_S_E122122_F42_scaffold_10 798 5202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15526804..15527600) /note="source:CACAO_M_S_E122122_F42_scaffold_10 1 797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15529560..15529685) /note="source:INTACT296_F13_scaffold_9-int 13151 13267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15529618..15529703 /note="source:scaffold_3_CACTA_0382 1861 1951" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15530425..15530476) /note="source:INTACT296_F13_scaffold_9-int 13177 13228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15533539..15536871) /note="source:CACAO_M_E71708_F85_scaffold_10 1 3333" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15534554..15544060 /locus_tag="TCM_044291" /note="dbxref CacaoGD:Thecc1EG044291" mRNA join(15534554..15534670,15535293..15535372, 15537677..15538277,15538656..15538728,15539379..15539460, 15540208..15540333,15540452..15540747,15540948..15541019, 15541384..15541434,15541566..15541762,15542197..15542359, 15542464..15542881,15543765..15544060) /locus_tag="TCM_044291" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014385t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS join(15538198..15538277,15538656..15538728, 15539379..15539460,15540208..15540333,15540452..15540747, 15540948..15541019,15541384..15541434,15541566..15541762, 15542197..15542359,15542464..15542862) /locus_tag="TCM_044291" /note="paralog of Thecc1EG014385t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19272.1" /translation="MEGICDMPAFRVCDMPWRESVTCQRLEYQSVDFVLCKLDDTTAT MSVISEESRQYEDLDSLLIMSREKWAFNVVINTHFLGNGGNSSLVKDSCPLYSKGQRL PMHVQMAMQLEAKRLLQGIKTLEPTLDEANREYFMDIDVSLSEGHQYVPIGHMEDQAN WGLGAREKRRNLKQKRVTGAMKERRTVTTEVDELSGPELMEEGDDHGNGNEEPVKTVL TLDHATTAPQPQRGHPQTHSANRPSTFEDRVFARILDDLKSQGGPLAHDAGEDHDDAD DGQHDESGVHIHDDIVGANGDPTLEADLDDVVVEDMTLQSNNAEIDPVPERNVRILGD QGANFFTTLKDPKEEMTSEQIDTCLSLLCKWMTRSKLKLYNTRACVDTILILHTTFPT QDALATMEIPNELRGYVEGERPTYDKKWEDVDFILAPCNVDGHWVVTKIDLVRWTIKV VDSARTLGVKNNRVRTAHMTPLTTMMPIICHQVGFFNRTYRKTQDLKPMPLEIHLPKA KMHQ" mobile_element 15538896..15539251 /note="source:CACAO_Mutator_E1149_scaffold_5 1 354" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15539068..15539370) /note="source:scaffold_1_CACTA_0009 12785 13109" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15539130..15541708) /note="source:CACAO_on_E193_scaffold_6 9317 11903" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15540856..15543569 /note="source:CACAO_Mutator_E161_scaffold_1 1501 4427" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15543243..15543672 /note="source:scaffold_1_CACTA_0009 8916 9376" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15543673..15543684) /note="source:CACAO_on_E193_scaffold_6 3875 3962" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15543722..15543860 /note="source:scaffold_5_CACTA_0607 5899 6022" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15543857..15544018) /note="source:scaffold_5_CACTA_0607 5097 5250" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15544054..15544839 /note="source:scaffold_1_CACTA_0009 9522 10300" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15544835..15547212) /note="source:CACAO_on_E193_scaffold_6 120 2501" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15547166..15547362 /note="source:CACAO_Mutator_E1149_scaffold_5 13526 13722" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15547279..15547608) /note="source:CACAO_M_E33977_F20_scaffold_4 5407 5733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15547325..15547887 /note="source:scaffold_1_CACTA_0009 13263 13830" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15548073..15548185 /note="source:INTACT1427F_F390_scaffold_9-int 2956 3067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15548259..15548306 /note="source:INTACT1427F_F390_scaffold_9-int 3593 3642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15548356..15548406 /note="source:INTACT1427F_F390_scaffold_9-int 3590 3642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15548406..15548456) /note="source:INTACT444_F216_scaffold_4-int 16841 16893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15548588..15548764) /note="source:CACAO_Mutator_E1998_scaffold_9 11073 11248" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15549184..15549499) /note="source:CACAO_Mutator_E1998_scaffold_9 10676 11008" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15549644..15549936) /note="source:CACAO_Mutator_E1998_scaffold_9 10547 10918" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15549934..15550524) /note="source:CACAO_Mutator_E1998_scaffold_9 10401 11023" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15550673..15550802) /note="source:CACAO_Mutator_E1998_scaffold_9 10221 10350" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15551525..15551590 /note="source:INTACT1427F_F390_scaffold_9-int 5514 5579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15551988..15553042) /note="source:INTACT584_F15_scaffold_3-int 9511 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15553932..15555139) /note="source:CACAO_M_E5390_F15_scaffold_2 7780 8987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15557194..15559983 /note="source:CACAO_M_E73030_F79_scaffold_10 1 2768" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15567391..15576599 /locus_tag="TCM_044295" /note="dbxref CacaoGD:Thecc1EG044295" mRNA join(15567391..15567534,15575289..15575393, 15575480..15575554,15576213..15576599) /locus_tag="TCM_044295" /product="TCP-1/cpn60 chaperonin family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001640t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000266001" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" mobile_element complement(15569073..15569626) /note="source:INTACT674_F296_scaffold_6-int 4600 5147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15570949..15573747) /note="source:CACAO_M_E71704_F244_scaffold_10 1 2799" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(15575373..15575393,15575480..15575554, 15576213..15576431) /locus_tag="TCM_044295" /note="paralog of Thecc1EG001640t1" /codon_start=1 /product="TCP-1/cpn60 chaperonin family protein" /protein_id="EOY19273.1" /db_xref="Phytozome:GSVIVT01000266001" /db_xref="TAIR:AT5G26360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81503" /translation="MTTLQGKHANGENAWIGIDENTGAIADMKEQKIWDAYNLKAQTF KTAIEMACMLLRIDDIVSGIKKKQAPRANQAPSKPKVETQADHYKKTNFFRWKKFIGN FQ" mobile_element 15576849..15576891 /note="source:scaffold_5_CACTA_0610 5703 5746" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15577276..15577406 /note="source:scaffold_4_CACTA_0495 1068 1182" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15581599..15585062) /note="source:CACAO_M_S_E100409_F33_scaffold_9 7357 10859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15585063..15586121) /note="source:CACAO_M_E623_F328_scaffold_1 2118 3177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15586120..15588224) /note="source:CACAO_M_E45364_F328_scaffold_6 4456 6558" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15588225..15592500 /note="source:CACAO_M_E57889_F328_scaffold_9 1 3161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15592501..15595640 /note="source:CACAO_M_E12297_F14_scaffold_3 9766 12908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15595629..15598618 /note="source:CACAO_M_S_E66372_F33_scaffold_5 6777 9749" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15596894..15620888 /locus_tag="TCM_044299" /note="dbxref CacaoGD:Thecc1EG044299" mRNA join(15596894..15596946,15611875..15612393, 15613190..15613282,15614921..15614996,15617352..15617461, 15619089..15619180,15619441..15619614,15619815..15619908, 15620535..15620888) /locus_tag="TCM_044299" /product="Uricase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24880.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24880.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4521t2" mobile_element complement(15598620..15599087) /note="source:INTACT242_F12_scaffold_1-int 4089 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15599113..15600080) /note="source:INTACT242_F12_scaffold_1-int 3157 4121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15600080..15601006) /note="source:INTACT215F_F14_scaffold_3-int 6710 7637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15600934..15601055 /note="source:CACAO_M_E59641_F12_scaffold_9 3884 4003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15602097..15603181) /note="source:CACAO_M_E11662_F12_scaffold_2 8818 9913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15603180..15603554) /note="source:INTACT88_F12_scaffold_4-int 12285 12578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15603783..15604012 /note="source:INTACT215F_F14_scaffold_3-int 11622 11865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15603971..15604213) /note="source:INTACT88_F12_scaffold_4-int 11277 11510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15604552..15604701) /note="source:CACAO_M_E35674_F13_scaffold_5 3689 3854" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15604916..15606067) /note="source:CACAO_M_S_E100409_F33_scaffold_9 1 1163" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(15612187..15612393,15613190..15613282, 15614921..15614996,15617352..15617461,15619089..15619180, 15619441..15619614,15619815..15619908,15620535..15620618) /locus_tag="TCM_044299" /codon_start=1 /product="Uricase" /protein_id="EOY19274.1" /db_xref="Phytozome:POPTR_0010s24880.1" /db_xref="TAIR:AT2G26230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RSB9" /translation="MAKEMDGFNFEQRHGKARVRVGRVWRSKDGRRHSMVEWNVNISL LSNCTGAYVRDDNSDIVATDTMKNTVYVKAKECSEQLSAEEFAILLGKHFTSFYPQVF TAIVKVVEKPWERVSVNGQAHVHGFKLASEKHTAEAIVQKSGILQLTSGIEGLSLLKT TKSGFEGFIRDKYTALPETRERMLATEVTASWRYSYESVSSIPQKPLYFNECYLNVKK VLADTFFGPPDGGVYSASVQSTLFHMAKAVLSRFMDISSVQLKMPNIHFLPVNISSKD IGVIVKFNDDVYLPTDEPHGSIEATLSRFWSKM" misc_feature join(15616094..15616811,15617352..15617371) /locus_tag="TCM_044299" /note="Gene fragment of Thecc1EG044299t1; dbxref gnl|CacaoGD|Thecc1EG044299t1; quality class is mediumpartial-partof is thecc1eg044299t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04681t00001; dbxref CacaoGD:Thecc1EG044301t1" mobile_element complement(15624490..15627627) /note="source:INTACT261_F189_scaffold_2-int 8860 11991" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15628322..15637879 /note="source:CACAO_M_S_E89200_F13_scaffold_8 1 9639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15630831..15637930) /note="source:INTACT515_F237_scaffold_9-int 498 7570" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15637931..15640836) /note="source:CACAO_M_E71701_F81_scaffold_10 1 2906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15640745..15640850 /note="source:INTACT263_F12_scaffold_6-int 9822 9929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15640837..15641338) /note="source:INTACT515_F237_scaffold_9-int 1 502" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15641644..15641709) /note="source:CACAO_M_E315_F14_scaffold_1 9339 9407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15641679..15641729 /note="source:INTACT537_F22_scaffold_2-int 733 780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15641901..15642000 /note="source:CACAO_M_S_E1795_F14_scaffold_1 952 1069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15642869..15643619) /note="source:INTACT261_F189_scaffold_2-int 4612 5361" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15643622..15645140) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6731 8217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15650551..15652287) /note="source:INTACT695_F301_scaffold_5-int 1929 3620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15658592..15658671 /note="source:scaffold_8_CACTA_0867 18211 18290" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15663527..15672245) /note="source:CACAO_Mutator_E1149_scaffold_5 6 13721" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15672069..15672670 /note="source:scaffold_1_CACTA_0009 12783 13291" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15672440..15672790 /note="source:CACAO_Mutator_E39_scaffold_1 3176 3529" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15673404..15675818) /note="source:scaffold_3_CACTA_0384 7999 10346" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15674319..15676001 /note="source:INTACT785_F332_scaffold_2-int 7290 8947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15676037..15676405 /note="source:CACAO_M_E33977_F20_scaffold_4 15723 16090" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15680336..15693040 /locus_tag="TCM_044307" /note="dbxref CacaoGD:Thecc1EG044307" mRNA join(15680336..15680656,15680751..15680897, 15681788..15681878,15681985..15682103,15682414..15682604, 15682710..15682920,15684478..15684715,15684807..15685231, 15685397..15685538,15686158..15686357,15686515..15686825, 15687177..15687279,15687362..15687580,15688705..15688944, 15690314..15690523,15690891..15691160,15691628..15691831, 15692053..15693040) /locus_tag="TCM_044307" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21694" /inference="similar to AA sequence:Phytozome:POPTR_0017s04900.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc57t1" mRNA join(15680403..15680656,15680751..15680897, 15681788..15681878,15681985..15682103,15682414..15682604, 15682710..15682920,15684478..15684715,15684807..15685231, 15685397..15685538,15686158..15686357,15686515..15686864, 15687183..15687279,15687362..15687580,15688705..15688944, 15690314..15690523,15690891..15691160,15691628..15691831, 15692053..15692769) /locus_tag="TCM_044307" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene21694" /inference="similar to AA sequence:Phytozome:POPTR_0017s04900.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc57t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc57t1" CDS join(15680516..15680656,15680751..15680897, 15681788..15681878,15681985..15682103,15682414..15682604, 15682710..15682920,15684478..15684715,15684807..15685231, 15685397..15685538,15686158..15686357,15686515..15686864, 15687183..15687279,15687362..15687580,15688705..15688944, 15690314..15690523,15690891..15691160,15691628..15691831, 15692053..15692217) /locus_tag="TCM_044307" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY19276.1" /db_xref="Phytozome:POPTR_0017s04900.1" /db_xref="TAIR:AT1G06720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MYB7" /translation="MAMDSGAGEQSHKAHRSRQSGASAKRKAQAKAANKNQNSDRRQQ NPKAFAFRSNAKAKRLQSRAVEKEQRRLHLPVIDRSYSEPPPFVVVVQGPPQVGKSLV IKSLVKHYTKHNLPEVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALLLIDG SYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLKKTKQRLKHRFWTEIYDGA KLFYLSGLIHGKYPKREIHNLARFISVMKFPPLSWRISHPYILVDRFEDVTPPDRVQM NNKCDRNVTLYGYLRGCNLKKGTKVHIAGVGDFSLAGVTGLSDPCPLPSAAKKKGLRD KEKLFYAPMSGLGDLLYDKDAVYININDHFVQYSKVDEMGGTLRKGKERDVGEALVKS LQNIKNPIDEKLEKSKISLFSQNPNGLLETEGGKKDCDESPKHIRDIEPLEQYQPGEE DDAAQFDEESAHSDLDGSKSSDLDDEGSNFGEENADALERPGRVMEQVEFHNGRKRRK AIFGNSIDHSSLKVVDEENADDEYDDDDEDEGEDDGSDEDTQSFLGSEFSDGDNEDLK SDEDGMGNISKWRALLVERTAKKQNINLMQLVYGKSASTSNTFINEVQDDSENEESDG EFFKPKGEQKKNLKEGLDSDNINTEDCSKSTNYSALKNWKEEEVYGSVRDRFVTGDWS KAALRNQMSEAKTEAEDDVYGDFEDLETGEKCESHQKEDSSNGAIQNKDDAATEERRL KKLALRAKFDAQDDGSESPEEETDARHGFKFHQSQANDSGYYDKLKEEIEHQKQMNIA ELNDLDEATRLEIEGFCTGMYLRLEVHGVPFEMVEYFDPCHPVLVGGIGLGEENVGYM QTRLKRHRWHKKVLKTRDPIIVSIGWRRYQTTPVYAIEDQNGRHRMLKYTPEHMHCLA MFWGPLAPPKSGVLAVQSLSNNQAAFRIIATAYVLEFNHAAQIVKKIKLVGCPCKIFK RTALIKDMFTSDLEVARFEGAAVRTVSGIRGQVKKAAKEEIGNQPKKKGGQPREGIAR CTFEDRILMSDIVFLRAWTRVEVPQFYNPLTTSLQPRQTTWQGMKTVAELRREHNLPI PVNKDSLYKPIERKPRKFNPLVIPKALQADLPFESKPKNIPHRKRPLLEDRRAVVMEP HERKVHALVQQLQLIRNDKMKKRRLKEGQKRKELETQRAKDEQLLRKRRREERQERYR EQDKLKKKIRRHAEA" CDS join(15680516..15680656,15680751..15680897, 15681788..15681878,15681985..15682103,15682414..15682604, 15682710..15682920,15684478..15684715,15684807..15685231, 15685397..15685538,15686158..15686357,15686515..15686825, 15687177..15687279,15687362..15687580,15688705..15688944, 15690314..15690523,15690891..15691160,15691628..15691831, 15692053..15692217) /locus_tag="TCM_044307" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY19275.1" /db_xref="Phytozome:POPTR_0017s04900.1" /db_xref="TAIR:AT1G06720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MYB7" /translation="MAMDSGAGEQSHKAHRSRQSGASAKRKAQAKAANKNQNSDRRQQ NPKAFAFRSNAKAKRLQSRAVEKEQRRLHLPVIDRSYSEPPPFVVVVQGPPQVGKSLV IKSLVKHYTKHNLPEVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALLLIDG SYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLKKTKQRLKHRFWTEIYDGA KLFYLSGLIHGKYPKREIHNLARFISVMKFPPLSWRISHPYILVDRFEDVTPPDRVQM NNKCDRNVTLYGYLRGCNLKKGTKVHIAGVGDFSLAGVTGLSDPCPLPSAAKKKGLRD KEKLFYAPMSGLGDLLYDKDAVYININDHFVQYSKVDEMGGTLRKGKERDVGEALVKS LQNIKNPIDEKLEKSKISLFSQNPNGLLETEGGKKDCDESPKHIRDIEPLEQYQPGEE DDAAQFDEESAHSDLDGSKSSDLDDEGSNFGEENADALERPGRVMEQVEFHNGRKRRK AIFGNSIDHSSLKVVDEENADDEYDDDDEDEGEDDGSDEDTQSFLGSEFSDGDNEDLK SDEDGMGNISKWRALLVERTAKKQNINLMQLVYGKSASTSNTFINEVQDDSENEESDG EFFKPKGEQKKNLKEGLDSDNINTEDCSKSTNYSALKNWKEEEVYGSVRDRFVTGDWS KAALRNQMSEAKTEAEDDVYGDFEDLETGEKCESHQKEDSSNGAIQNKDDAATEERRF TDDGSESPEEETDARHGFKFHQSQANDSGYYDKLKEEIEHQKQMNIAELNDLDEATRL EIEGFCTGMYLRLEVHGVPFEMVEYFDPCHPVLVGGIGLGEENVGYMQTRLKRHRWHK KVLKTRDPIIVSIGWRRYQTTPVYAIEDQNGRHRMLKYTPEHMHCLAMFWGPLAPPKS GVLAVQSLSNNQAAFRIIATAYVLEFNHAAQIVKKIKLVGCPCKIFKRTALIKDMFTS DLEVARFEGAAVRTVSGIRGQVKKAAKEEIGNQPKKKGGQPREGIARCTFEDRILMSD IVFLRAWTRVEVPQFYNPLTTSLQPRQTTWQGMKTVAELRREHNLPIPVNKDSLYKPI ERKPRKFNPLVIPKALQADLPFESKPKNIPHRKRPLLEDRRAVVMEPHERKVHALVQQ LQLIRNDKMKKRRLKEGQKRKELETQRAKDEQLLRKRRREERQERYREQDKLKKKIRR HAEA" mobile_element 15693966..15697509 /note="source:INTACT50_F121_scaffold_4-int 1 3532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15697510..15699992 /note="source:INTACT50_F121_scaffold_4-int 4752 7295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15699975..15704182) /note="source:INTACT414F_F358_scaffold_4-int 1766 5975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15704183..15704406 /note="source:INTACT124_F12_scaffold_10-int 3464 4078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15704407..15705202 /note="source:scaffold_5_CACTA_0591 4823 5635" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15705203..15705424 /note="source:INTACT124_F12_scaffold_10-int 4079 4694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15705425..15706837) /note="source:CACAO_M_E44864_F9_scaffold_6 1 1434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15706838..15707702 /note="source:scaffold_5_CACTA_0591 5769 6633" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15707535..15707731 /note="source:INTACT296_F13_scaffold_9-int 13739 13926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15707701..15708079 /note="source:CACAO_M_S_E19200_F389_scaffold_3 8854 9234" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15708080..15709638 /note="source:INTACT50_F121_scaffold_4-int 226 1783" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15710099..15710198 /note="source:CACAO_M_S_E99574_F14_scaffold_9 11051 11154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15710782..15712893 /note="source:scaffold_9_CACTA_0931 1 2126" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15712894..15714432) /note="source:CACAO_M_S_E119160_F14_scaffold_9 13991 15547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15714432..15722043) /note="source:INTACT28_F14_scaffold_3-int 690 9688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15722005..15722094 /note="source:CACAO_M_E58877_F5_scaffold_9 24655 24723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15722074..15722273 /note="source:scaffold_9_CACTA_0931 2122 2306" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15722265..15722708) /note="source:INTACT1443F_F12_scaffold_9-int 10528 10943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15722709..15723241) /note="source:CACAO_M_E48452_F5_scaffold_6 14282 14825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15722781..15723317 /note="source:INTACT255_F60_scaffold_8-int 3751 4289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15723944..15724141 /note="source:INTACT255_F60_scaffold_8-int 4839 5043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15724160..15724677 /note="source:CACAO_M_E84908_F12_scaffold_10 2817 3429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15724588..15726313) /note="source:CACAO_M_E43348_F5_scaffold_5 3689 4991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15726313..15727445 /note="source:CACAO_M_E1841_F5_scaffold_1 3497 4748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15726699..15728409) /note="source:CACAO_M_S_E34046_F60_scaffold_4 9410 11121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15731136..15732840) /note="source:CACAO_M_E5326_F22_scaffold_2 6434 8154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15733133..15733299 /note="source:CACAO_M_S_E109853_F60_scaffold_9 9227 9403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15733300..15733545 /note="source:INTACT255_F60_scaffold_8-int 1 245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15733527..15735203) /note="source:CACAO_M_E43672_F60_scaffold_5 18035 19710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15735189..15737675) /note="source:INTACT653_F88_scaffold_9-int 4254 6713" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15737670..15742234) /note="source:CACAO_M_E43672_F60_scaffold_5 13485 18044" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15742230..15744741) /note="source:CACAO_M_E49885_F60_scaffold_7 1 2503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15748714..15751667 /note="source:CACAO_M_E35778_F7_scaffold_5 1 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15752758..15753082) /note="source:INTACT138_F13_scaffold_4-int 80 453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15752893..15753098 /note="source:scaffold_9_CACTA_0931 327 534" /mobile_element_type="transposon:TIR/CACTA" gene 15755799..15757788 /locus_tag="TCM_044311" /note="dbxref CacaoGD:Thecc1EG044311" mRNA 15755799..15757788 /locus_tag="TCM_044311" /product="UDP-Glycosyltransferase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01910.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01910.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05144t00001" CDS 15755967..15757415 /locus_tag="TCM_044311" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein" /protein_id="EOY19277.1" /db_xref="Phytozome:POPTR_0008s01910.1" /db_xref="TAIR:AT3G10630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LPN6" /translation="MTPNLKSFIICSSSLFVLFLAISFSFSRTNYHRIQQLKLSLNSR HPTFFQSLLSFLLKTPNPNRSHSPNPISRASHCVLWMAPFLSGGGYSSEAWSYVLALN EYMKSLENPSFKLAIDQHGDLESLEFWEGLPQDIRNLAIRLYQTECRINETIVVCHSE PGAWYPPLFETLPCPPTGYHDFMFVIGRTMFESDRLTSQHVKRCNRMDSVWVPTDFHV STFVQSGVDPAKVVKVVQPIDVKFFDPSKYKPLDIASKGNLVLGARIPNSNPRKEFVF LSVFKWEFRKGWDVLLKAYLREFSRDDGVVLYLLTNPYHSNRDFDNKIVQFVEHSHME KPANGWASVCVIDTHIAQVDLPKLYKAADAFVLPSRGEGWGRPIVEAMAMSLPAITTN WSGPTEYLTEENSYPLPVDRLSEVTEGPFKGHLWAEPSVIELQALMRHVISNVEEAKA KGKQARKDMIRKFSPEIVAGMITGHIQNIIDQ" gene complement(15757950..15762870) /locus_tag="TCM_044312" /note="dbxref CacaoGD:Thecc1EG044312" mRNA complement(join(15757950..15758365,15758466..15758580, 15759198..15759292,15761534..15761626,15762440..15762490, 15762595..15762870)) /locus_tag="TCM_044312" /product="Nudix hydrolase" /inference="alignment:exonerate- protein:2:TAIR:AT3G10620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022924t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01880.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05255t00001" CDS complement(join(15758300..15758365,15758466..15758580, 15759198..15759292,15761534..15761626,15762440..15762490, 15762595..15762822)) /locus_tag="TCM_044312" /note="paralog of Thecc1EG022924t1" /codon_start=1 /product="Nudix hydrolase" /protein_id="EOY19278.1" /db_xref="Phytozome:POPTR_0008s01880.1" /db_xref="TAIR:AT3G10620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAF2" /translation="MALCRPLLLYAPLHRFPVSNPTFFFPEYPCYSCKFTNRRNPQTP FCRTCCSSSSMEAPPQGYRRNVGICLINSSKKIFSASRLDIPNAWQMPQGGIDDNEDP KVAALRELKEETGVSSAEVLAEAPYWLTYDFPPEVREKLKHQWGSDWKGQAQKWFLLK FTGKEEEINLLGDGTEKPEFGEWSWMTPEQIVELAVDFKKPVYKKVLEVFAPYLQ" mobile_element complement(15759940..15760046) /note="source:CACAO_Mutator_E1744_scaffold_8 1195 1298" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15760352..15760417) /note="source:CACAO_Mutator_E1744_scaffold_8 894 959" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15763779..15763831 /note="source:CACAO_Mutator_E1744_scaffold_8 1289 1342" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15764613..15767421) /note="source:CACAO_Mutator_E1018_scaffold_5 1534 4382" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15769173..15780541) /note="source:INTACT70_F13_scaffold_10-int 1 11369" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15780542..15782100) /note="source:CACAO_Mutator_E592_scaffold_3 9288 10836" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15782877..15793764) /note="source:CACAO_M_E71671_F17_scaffold_10 1 10888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15796546..15797120 /note="source:CACAO_M_E43348_F5_scaffold_5 9482 10070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15797120..15799988) /note="source:CACAO_M_S_E122081_F78_scaffold_10 1 4983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15799989..15801092 /note="source:CACAO_M_E43348_F5_scaffold_5 10101 11205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15801087..15809394) /note="source:INTACT754_F12_scaffold_5-int 3 8315" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15809501..15810256) /note="source:CACAO_Mutator_E592_scaffold_3 7891 8645" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15810257..15811769) /note="source:CACAO_M_E11488_F17_scaffold_2 6365 7887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15811765..15811950) /note="source:CACAO_Mutator_E592_scaffold_3 7714 7900" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15813050..15813061 /note="source:CACAO_M_E41757_F82_scaffold_5 6618 6629" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15813062..15823259) /note="source:CACAO_M_S_E122077_F328_scaffold_10 1 10198" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15818266..15837674 /locus_tag="TCM_044320" /note="dbxref CacaoGD:Thecc1EG044320" mRNA join(15818266..15818427,15828135..15828540, 15828629..15828724,15828949..15829154,15829912..15830169, 15831864..15832002,15832076..15832288,15833202..15833407, 15834157..15834357,15834448..15834547,15836213..15836322, 15836458..15836604,15837033..15837674) /locus_tag="TCM_044320" /product="Exocyst subunit exo70 family protein A1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034645001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022918t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034645001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04566t00001" mobile_element complement(15823260..15826002) /note="source:CACAO_Mutator_E592_scaffold_3 4031 6763" /mobile_element_type="transposon:TIR/Mutator" CDS join(15828379..15828540,15828629..15828724, 15828949..15829154,15829912..15830169,15831864..15832002, 15832076..15832288,15833202..15833407,15834157..15834357, 15834448..15834547,15836213..15836322,15836458..15836604, 15837033..15837150) /locus_tag="TCM_044320" /note="paralog of Thecc1EG022918t1" /codon_start=1 /product="Exocyst subunit exo70 family protein A1" /protein_id="EOY19279.1" /db_xref="Phytozome:GSVIVT01034645001" /db_xref="TAIR:AT5G03540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZD3" /translation="MGIAVVGMDSLSERAAMMREALLKSQTITDNVVSILGSFDSRLS ALETAMRPTQIRTHAIRKAHENIDKTLKSAEVILAQFDLSRQAEAKILKGPHEDLEGY LGAIDQLRNNIRFFSSSKNFRNSDGVLNQANTLLDKAISKLEDEYKQLLNSYSKPIEP DRLFDGLPNALRPSSGSPGNQGDAGGKSTSHNHSELEKSELETAVYTPPTLIPPRIMP LLHDLAQQMVRAGHQQQLLRIYKETRSLVLEESLRKLGVEKLSKDDVQKMQWEVLEAK IGNWIHFMRIAVKLLFAGERKVCDQMFEGFDSLSDQCFAEVTASSVSVLLSFGEAIAK SKRSPEKLFVLLDMYEIMRELHPEIETIFKGKACTEIRESAFGLTKRLAQTAQETFGD FEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQEFENADGTNSQLA SVTMRIMQALQTNLDGKSKQYKDQALTHLFLMNNIHYMVRSVRRSEAKDLLGDDWVQR HRRIVQQHANQYKRNAWQKILQCLSIQGLTSSGGGSAVGGDGGNSSGVSRALVKDRFK IFNMQFEELHQRQSQWTVPDTELRESLRLAVAEVLLPAYRSFLKRYGPLVESGKNPQK YIKYSVEDLERMLGEFFEGKNLSEPKR" mobile_element 15839400..15840905 /note="source:INTACT591_F264_scaffold_1-int 1 1639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15841828..15841928) /note="source:CACAO_M_E11098_F15_scaffold_2 9132 9233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15841884..15842437 /note="source:INTACT591_F264_scaffold_1-int 5700 6263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15842438..15852967 /note="source:INTACT207_F15_scaffold_4-int 1 10595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15852806..15852986) /note="source:INTACT204F_F52_scaffold_3-int 7949 8124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15852963..15853140 /note="source:INTACT591_F264_scaffold_1-int 6254 6429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15853136..15853828 /note="source:INTACT591_F264_scaffold_1-int 18867 19587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15853826..15855363 /note="source:INTACT591_F264_scaffold_1-int 19708 21282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15861751..15863171 /note="source:scaffold_8_CACTA_0859 16514 17937" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15869382..15869538) /note="source:CACAO_M_S_E85957_F12_scaffold_7 14666 14817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15870305..15870428 /note="source:INTACT93F_F345_scaffold_2-int 17664 17788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15870495..15872248 /note="source:CACAO_M_E24592_F195_scaffold_4 1570 3264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15872248..15873635) /note="source:scaffold_4_CACTA_0493 231 1626" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15874204..15881698) /note="source:INTACT224_F176_scaffold_8-int 4798 12269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15881743..15882409) /note="source:INTACT224_F176_scaffold_8-int 4169 4831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15882404..15883021) /note="source:INTACT41F_F338_scaffold_1-int 7585 8223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15883018..15886493 /note="source:CACAO_on_E22_A_scaffold_2 950 4439" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 15884103..15886304 /locus_tag="TCM_044325" /note="dbxref CacaoGD:Thecc1EG044325" mRNA join(15884103..15884141,15885916..15886304) /locus_tag="TCM_044325" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s09120.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" mobile_element complement(15885936..15886638) /note="source:scaffold_5_CACTA_0608 261 983" /mobile_element_type="transposon:TIR/CACTA" CDS 15885990..15886196 /locus_tag="TCM_044325" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19280.1" /translation="MFNEMALVVGKDMATGNLAKSFADIDFQTNTKADAMPIDLDKVV DKKMRESQSFLSMGTSLSQSRRKR" mobile_element 15886481..15886914 /note="source:CACAO_on_E22_A_scaffold_2 4581 5026" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 15893243..15898795 /locus_tag="TCM_044326" /note="dbxref CacaoGD:Thecc1EG044326" mRNA join(15893243..15893386,15893538..15893649, 15894800..15894883,15896535..15896574,15897258..15897326, 15897438..15897547,15898309..15898795) /locus_tag="TCM_044326" /product="Nuclear transport factor 2 family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g33580.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24810.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11292t00001" CDS join(15893263..15893386,15893538..15893649, 15894800..15894883,15896535..15896574,15897258..15897326, 15897438..15897547,15898309..15898444) /locus_tag="TCM_044326" /codon_start=1 /product="Nuclear transport factor 2 family protein" /protein_id="EOY19281.1" /db_xref="Phytozome:POPTR_0010s24810.1" /db_xref="TAIR:AT5G04830.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RSB2" /translation="MTLALRPHNFSKFPSQLSTCGLAAKKISEFSMEKVEYSKLEDKR DSMREAECVGKEACDSDSMKMKRLSDHIMPHLLNLYGSCATSCDFEIYHVDASFEDPL MCAHGVKQIKSAFYSLSKVFSESRIVEYSVTEKVISDGKQEILIDNKQHYKFLGRNID MISLIRLYVEDGKVVRHEDWWDKKPLRNRETVNLPLVGRIMELTRRGSMLATHALMGF GKDPTG" gene 15901810..15902706 /locus_tag="TCM_044327" /note="dbxref CacaoGD:Thecc1EG044327" mRNA 15901810..15902706 /locus_tag="TCM_044327" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS 15902132..15902449 /locus_tag="TCM_044327" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19282.1" /translation="MICSFLNPLHTSHPITANTNHVNIFLIVYGYGCRSAWPDMNGSV TTTLQTLGIFYCSWELHDCKISWRVRPWQSSFTLLPAACCLLLAACCLLLVPIYMYSH FGV" mobile_element 15906343..15906417 /note="source:CACAO_M_S_E18487_F233_scaffold_3 1252 1324" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15910911..15915073) /locus_tag="TCM_044328" /note="dbxref CacaoGD:Thecc1EG044328" mRNA complement(join(15910911..15912885,15912983..15913184, 15913371..15915073)) /locus_tag="TCM_044328" /product="Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022872t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24800.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4568t1" CDS complement(join(15911749..15912885,15912983..15913184, 15913371..15914572)) /locus_tag="TCM_044328" /note="paralog of Thecc1EG022872t1" /codon_start=1 /product="Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein, putative" /protein_id="EOY19283.1" /db_xref="Phytozome:POPTR_0010s24800.1" /db_xref="TAIR:AT3G52490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVK7" /translation="MRAGVCTVQQALTAEAANLVKQAVGLARRRGHAQVTPLHVASAM LASSTGLLRRACLQSHSHPLQFRALELCFNVALNRLPASSSSPLLGPHSHHPSLSNAL VAAFKRAQAHQRRGSIENQQQPILALKIELEHLVISILDDPSVSRVMREAGFSSTQVK SKVEQTVSLEICSQSPSVSASCQTKESAKPQVLGANVSHCMSYSQVGFGLSLSKPLDQ VRNEDVTNVLNTVVNKRRNTVIIGECIGSAESVVRGVMDKFEKGQVSGDLRYMQFISL PLFSLRNLPKDEVEQKLVELKCLVKSYMGRGVVLYLGDLKWISEFWSNCGEQRSNFYC PVEHIVMELKRFVCGIRETGKLFLMGIATFQTYMKCKTGHPSLETIWELYPLTISVDS LGLSLNLDSDSQPQHRNKATIDGISWPLHEAGVNKNQTSFTDRLLNFDKAAQSTSSLP SWLQNYKEESKTNASHDKDSVNVRDLYRKWNSFRSSASKDHYNTEDALNISPLSSSSP ISASSQERNANLHKTNLSWPVIFEPKKSPKEHQFWLSESTDEGYGLPLRNDPKPDLLS NPNSSPNSASSSEAIEEDIDGLNEFKILNVENLNILCNALEKKVPWQKEMIPEIVSTI LECRSGMRKAKSWLKHREFKEETLLFFLGVDYEAKKKIARELARLIFGSQSNFASISL SNFSSTRADSNEQSGNKRKRDESGSSYLQRFGEALNENPHRVFFMEDLEQVDYCSQKG IKQAIESGRTTLSDGETVPLKDAIIIFSCESFSSVSRACSPRGKPNMGETEEKGNRKE DMELQNSCVSLDLNIAIENNSADECSGIGDIGILEYVDKQIIFRVQEL" mobile_element complement(15915515..15915613) /note="source:CACAO_Mutator_E592_scaffold_3 3626 3732" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15917689..15917828 /note="source:scaffold_5_CACTA_0585 5613 5746" /mobile_element_type="transposon:TIR/CACTA" gene complement(15918171..15923771) /locus_tag="TCM_044329" /note="dbxref CacaoGD:Thecc1EG044329" mRNA complement(join(15918171..15918580,15919293..15919396, 15923283..15923771)) /locus_tag="TCM_044329" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(15918304..15918580,15919293..15919396, 15923283..15923516)) /locus_tag="TCM_044329" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19284.1" /translation="MIEGGFGSVKKKFKNTLNGVIDVESLMNLGHAFKNLDSYNGLNF IGSCDRIESKILVDRNLENGIDQVSAGFNVTLREVKSSFGVIVGNGLSISFWEDEWIK GFIVKGCFLRIWLVIDGFTLDIMLVPNLVKVPSKGPKVFIVVDLVAPLEEWMKFNVDG AARGNSGKVGIGGVLRNNLGEIKITCSNSIRVHDANFAELSAFA" mobile_element 15925985..15926036 /note="source:CACAO_M_E58715_F13_scaffold_9 753 805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15928044..15928086 /note="source:scaffold_8_CACTA_0867 17241 17285" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15930126..15931930) /note="source:CACAO_M_E33977_F20_scaffold_4 14823 16547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15931168..15933688) /note="source:scaffold_9_CACTA_0922 5188 7651" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15933689..15934607) /note="source:CACAO_Mutator_E1012_scaffold_5 5648 6594" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15934325..15936377 /note="source:CACAO_Mutator_E1888_scaffold_9 2151 4979" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15936499..15937420) /note="source:CACAO_M_E33977_F20_scaffold_4 14707 15654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15937325..15937437 /note="source:CACAO_Mutator_E1149_scaffold_5 3296 3412" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15937421..15937493) /note="source:scaffold_9_CACTA_0922 6616 6690" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15937945..15938065) /note="source:CACAO_Mutator_E1410_scaffold_6 426 546" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15938059..15938173 /note="source:CACAO_Mutator_E161_scaffold_1 5878 5993" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15938173..15938437 /note="source:CACAO_Mutator_E161_scaffold_1 3921 4180" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15938187..15938476 /note="source:scaffold_1_CACTA_0009 9000 9283" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15938590..15938629) /note="source:CACAO_M_S_E5162_F13_scaffold_1 431 470" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15938627..15938786 /note="source:CACAO_Mutator_E161_scaffold_1 6073 6232" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15938864..15939143) /note="source:CACAO_Mutator_E1410_scaffold_6 5707 5987" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15938895..15940658 /note="source:CACAO_Mutator_E1410_scaffold_6 5707 7471" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15940654..15942182) /note="source:CACAO_M_E33977_F20_scaffold_4 5714 7532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15942183..15942609) /note="source:scaffold_1_CACTA_0009 4517 4936" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15942577..15943164 /note="source:scaffold_1_CACTA_0009 13256 13829" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15942610..15942867) /note="source:CACAO_M_E33977_F20_scaffold_4 5405 5713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15944712..15944789 /note="source:CACAO_M_E33787_F13_scaffold_4 19529 19613" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15944851..15944996) /note="source:INTACT135F_F90_scaffold_2-int 16997 17113" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15945453..15945544) /note="source:scaffold_8_CACTA_0860 498 589" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15948386..15950447) /note="source:CACAO_M_E1841_F5_scaffold_1 24484 25802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15950447..15951256) /note="source:CACAO_M_E1841_F5_scaffold_1 9632 10412" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15954542..15957500) /note="source:CACAO_M_E71658_F7_scaffold_10 1 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15957988..15961233 /locus_tag="TCM_044333" /note="dbxref CacaoGD:Thecc1EG044333" mRNA join(15957988..15958283,15958437..15958588, 15959011..15959104,15959638..15959709,15959796..15959907, 15960284..15960441,15960886..15961233) /locus_tag="TCM_044333" /product="SNF7 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24890.1" /inference="similar to AA sequence:ricco:30065.m001146" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01888t00001" CDS join(15958215..15958283,15958437..15958588, 15959011..15959104,15959638..15959709,15959796..15959907, 15960284..15960441,15960886..15960939) /locus_tag="TCM_044333" /note="dbxref ricco:30065.m001146" /codon_start=1 /product="SNF7 family protein" /protein_id="EOY19285.1" /db_xref="TAIR:AT5G04850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKM9" /translation="MKRVFGVKKDKEPPPSIEDASDRINKRGDTVDEKLKKLDAELSR YKEQIKKTRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVSFAAEGLKDA QQTMSALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDID EDELMGELDALEADMGSEADGVPSYLQPDKEEPDLDAELNLPSVPSGSTTAPAGRSNA QAEDELGLPTVPRASVRS" gene complement(15963060..15966284) /locus_tag="TCM_044334" /note="dbxref CacaoGD:Thecc1EG044334" mRNA complement(join(15963060..15963210,15963296..15963435, 15964294..15964420,15964958..15965033,15965726..15966284)) /locus_tag="TCM_044334" /product="BZIP-like protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034617001" /inference="similar to AA sequence:Phytozome:POPTR_0008s01930.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10743t00001" CDS complement(join(15963308..15963435,15964294..15964420, 15964958..15965033,15965726..15966126)) /locus_tag="TCM_044334" /codon_start=1 /product="BZIP-like protein" /protein_id="EOY19286.1" /db_xref="Phytozome:POPTR_0008s01930.1" /db_xref="TAIR:AT5G04840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVJ8" /translation="MSSSSQAQRSSSSPDPSTQNSVLEGKAAAGADDLPRQGEANPCG TLVRRAVSDSHALSKALFEDWIPGLAADGAEENSVGLTGLESTLVYGPNSPRRKSASV SDYALASALSKSVSQNMQQSVGEPAIAKTVKRNSWQHSRDRQVQYIAELERTINILQT LNTELEVRVISQNQQCVALYMENNILMQRLATLEDQIFIKEGQYQLLKKENERLMNAF ASGAPEAARSLVTWQILDMTKLNLN" mobile_element complement(15967655..15967847) /note="source:CACAO_Mutator_E1998_scaffold_9 9704 9886" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15968600..15968682 /note="source:CACAO_M_E69800_F12_scaffold_9 14421 14510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15968605..15968678) /note="source:INTACT83_F5_scaffold_9-int 11644 11719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15969014..15969143) /note="source:CACAO_Mutator_E1998_scaffold_9 9827 9941" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15971260..15971433 /note="source:scaffold_8_CACTA_0860 585 760" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15972208..15978215) /note="source:INTACT528_F17_scaffold_6-int 1814 7902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15978215..15980772) /note="source:CACAO_M_E11054_F12_scaffold_2 7421 10845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15980689..15980782) /note="source:scaffold_2_CACTA_0261 11422 11515" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15980774..15982569 /note="source:CACAO_M_E85923_F17_scaffold_12 12751 14527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15984084..15984208) /note="source:scaffold_8_CACTA_0860 229 330" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15984754..15984844) /note="source:scaffold_8_CACTA_0860 500 590" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15987182..15987256) /note="source:scaffold_8_CACTA_0860 472 540" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15987231..15987295) /note="source:INTACT336_F12_scaffold_2-int 10128 10201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15987552..15987748) /note="source:INTACT336_F12_scaffold_2-int 9284 9480" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15988788..15988884 /note="source:CACAO_M_E70891_F369_scaffold_10 12325 12411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15988799..15988904) /note="source:CACAO_M_E1841_F5_scaffold_1 3082 3179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15989909..15991490) /note="source:CACAO_M_E33018_F264_scaffold_4 1 1548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15994588..15997200 /note="source:CACAO_M_E506_F369_scaffold_1 1 2683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16002040..16005312 /note="source:INTACT153_F18_scaffold_9-int 2135 5408" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16005857..16007136 /locus_tag="TCM_044336" /note="dbxref CacaoGD:Thecc1EG044336" mRNA 16005857..16007136 /locus_tag="TCM_044336" /product="Flavonol 4'-sulfotransferase, putative" /inference="alignment:exonerate- protein:2:ricco:29709.m001186" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031898t1" /inference="similar to AA sequence:ricco:29790.m000822" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4554t1" CDS 16005977..16006954 /locus_tag="TCM_044336" /note="dbxref ricco:29790.m000822; paralog of Thecc1EG031898t1" /codon_start=1 /product="Flavonol 4'-sulfotransferase, putative" /protein_id="EOY19287.1" /db_xref="TAIR:AT3G45070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SKF3" /translation="MDSSESRKPLDQLPKESFWDNPLYQWDGFWYRAGHLDAAMALRS QYTARHDDVILASPMKTGTTWLKALCFCIMRTQPQEEDAQKIDEGTLVKSDDGEDPLV KNHPAVYVQTLEVQVFTAKQPLDISGMKSPRLFHTHLPYSALPDSIKNSKCKIVYIAR NPKDTLVSMWHFFNKLRTPEQGPYPFDKAFECFCKGVSHFGPFLDHVLQYWNESLKAP DKVLFLKYEDLKRDPKGHVKKLALFLGRPFTNEKKVEEVIWRCSLERLKNLEVNKNGV DPWVGMQNSAFFRTGKVGDWKNMFTTEMSERLDHITLQKLEGSGLHLDI" mobile_element complement(16007452..16007524) /note="source:INTACT296_F13_scaffold_9-int 13179 13255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16007462..16007532) /note="source:scaffold_3_CACTA_0382 1853 1919" /mobile_element_type="transposon:TIR/CACTA" gene 16008252..16008937 /locus_tag="TCM_044338" /note="dbxref CacaoGD:Thecc1EG044338" mRNA 16008252..16008937 /locus_tag="TCM_044338" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage" CDS 16008475..16008747 /locus_tag="TCM_044338" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19288.1" /translation="MFFSFMPCIFVKSICWCGVCWLLFCEMMLLCCCQVCFLWGSSSV CLFFLALLFRCLLAASAIQICLFSLEPSLSSGGLSTCSLFSLNRHD" mobile_element complement(16010972..16011029) /note="source:scaffold_1_CACTA_0011 7444 7504" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16021031..16021594 /note="source:CACAO_M_E42514_F40_scaffold_5 10287 10850" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16021696..16021732 /note="source:CACAO_M_E56638_F15_scaffold_8 589 625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16021722..16024197) /note="source:CACAO_M_E3774_F15_scaffold_1 1 2456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16026522..16036711) /note="source:INTACT692_F12_scaffold_10-int 1 10190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16041443..16042149) /note="source:CACAO_M_E3248_F5_scaffold_1 18125 18837" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16053149..16058723 /locus_tag="TCM_044341" /note="dbxref CacaoGD:Thecc1EG044341" mRNA join(16053149..16053240,16053494..16053656, 16054422..16054475,16054728..16054781,16055699..16055847, 16057338..16057390,16058389..16058404,16058473..16058723) /locus_tag="TCM_044341" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage" CDS join(16053202..16053240,16053494..16053656, 16054422..16054475,16054728..16054781,16055699..16055847, 16057338..16057390,16058389..16058404,16058473..16058544) /locus_tag="TCM_044341" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19289.1" /translation="MLIGLLSILGLHQVRMSPRTQTTTRGMVEQAAHVDAITRPYFST IRGHGRQGRTTRFASEEPPTAISVDYSQRIETRIAMNQATQVDYSQRIETRIAMNQAT QAEHETKKKREKAGERVAKWQLESEKERLCCYQFVKEKGCCWLPICAGKIRAGISLVH THRHVQSTENSYRQIMAFCGNAPTNVVSAMTTRKLLRHR" mobile_element 16054854..16055010 /note="source:INTACT242_F12_scaffold_1-int 1778 1931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16054954..16055394) /note="source:CACAO_M_E13038_F22_scaffold_3 13696 14150" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16056627..16057693) /note="source:CACAO_M_E43348_F5_scaffold_5 3689 4734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16058728..16058778) /note="source:INTACT230_F178_scaffold_3-int 13074 13122" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16058779..16059062 /note="source:CACAO_M_E57269_F15_scaffold_8 1 285" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16059056..16063981) /note="source:CACAO_M_S_E89806_F15_scaffold_8 1232 6157" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16063982..16066386 /note="source:CACAO_M_E12376_F15_scaffold_3 1 2409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16066487..16067155) /note="source:CACAO_M_E59221_F15_scaffold_9 7990 8658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16067149..16068395) /note="source:CACAO_M_E48700_F15_scaffold_6 7810 9055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16069184..16070856 /note="source:CACAO_M_E43672_F60_scaffold_5 1 1765" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16072430..16075363) /locus_tag="TCM_044343" /note="dbxref CacaoGD:Thecc1EG044343" mRNA complement(join(16072430..16072930,16073925..16075363)) /locus_tag="TCM_044343" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041213t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01950.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc607t5; alternateUTRof:Thecc1EG044343t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc624t3" mRNA complement(join(16072430..16072930,16073611..16073656, 16073925..16075362)) /locus_tag="TCM_044343" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041213t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc624t3; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc624t3" mRNA complement(join(16072430..16072930,16073611..16075362)) /locus_tag="TCM_044343" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041213t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01950.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7852t5; alternateUTRof:Thecc1EG044343t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc624t3" mRNA complement(join(16072882..16073656,16073925..16075362)) /locus_tag="TCM_044343" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041213t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01950.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc624t1; alternateUTRof:Thecc1EG044343t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc624t3" CDS complement(16073935..16075011) /locus_tag="TCM_044343" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041213t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative isoform 1" /protein_id="EOY19290.1" /db_xref="Phytozome:POPTR_0008s01950.1" /db_xref="TAIR:AT3G52060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVJ7" /translation="MLSSSSSSSPFVYSLTLFFSLFLLFFFAPQILPLKKQQSPITFQ DELDDLQLFHEATLASSRGFSKISHLGTTNPTPKIAFLFLTNSDLVFAPLWQRFFQGN DHLFNVYVHADPYSKLSTPQWSVKANFIPAKRTERGSPTLVSAARRLLANAIIDDPFN LYFALLSQHCIPLHSFQYIYTSLLGNPTAASKSFLTQPSHKSSIEILSNEPHLHNRYV ARGEGVMLPEVSFQRFRVGSQFFVLAKRHALLVLKERKLWRKFKLPCLDLDSCYPEEH YFPTLLSMQDPRGCSHYTLTRVNWTDSVDGHPHTYHSPEVSPDLLHTLRKSNSSYSYF FARKFSPDCLKPLMAIADDVIFRD" CDS complement(16073935..16075011) /locus_tag="TCM_044343" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041213t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative isoform 1" /protein_id="EOY19291.1" /db_xref="Phytozome:POPTR_0008s01950.1" /db_xref="TAIR:AT3G52060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVJ7" /translation="MLSSSSSSSPFVYSLTLFFSLFLLFFFAPQILPLKKQQSPITFQ DELDDLQLFHEATLASSRGFSKISHLGTTNPTPKIAFLFLTNSDLVFAPLWQRFFQGN DHLFNVYVHADPYSKLSTPQWSVKANFIPAKRTERGSPTLVSAARRLLANAIIDDPFN LYFALLSQHCIPLHSFQYIYTSLLGNPTAASKSFLTQPSHKSSIEILSNEPHLHNRYV ARGEGVMLPEVSFQRFRVGSQFFVLAKRHALLVLKERKLWRKFKLPCLDLDSCYPEEH YFPTLLSMQDPRGCSHYTLTRVNWTDSVDGHPHTYHSPEVSPDLLHTLRKSNSSYSYF FARKFSPDCLKPLMAIADDVIFRD" CDS complement(16073935..16075011) /locus_tag="TCM_044343" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041213t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative isoform 1" /protein_id="EOY19292.1" /db_xref="Phytozome:POPTR_0008s01950.1" /db_xref="TAIR:AT3G52060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVJ7" /translation="MLSSSSSSSPFVYSLTLFFSLFLLFFFAPQILPLKKQQSPITFQ DELDDLQLFHEATLASSRGFSKISHLGTTNPTPKIAFLFLTNSDLVFAPLWQRFFQGN DHLFNVYVHADPYSKLSTPQWSVKANFIPAKRTERGSPTLVSAARRLLANAIIDDPFN LYFALLSQHCIPLHSFQYIYTSLLGNPTAASKSFLTQPSHKSSIEILSNEPHLHNRYV ARGEGVMLPEVSFQRFRVGSQFFVLAKRHALLVLKERKLWRKFKLPCLDLDSCYPEEH YFPTLLSMQDPRGCSHYTLTRVNWTDSVDGHPHTYHSPEVSPDLLHTLRKSNSSYSYF FARKFSPDCLKPLMAIADDVIFRD" CDS complement(16073935..16075011) /locus_tag="TCM_044343" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG041213t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative isoform 1" /protein_id="EOY19293.1" /db_xref="Phytozome:POPTR_0008s01950.1" /db_xref="TAIR:AT3G52060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVJ7" /translation="MLSSSSSSSPFVYSLTLFFSLFLLFFFAPQILPLKKQQSPITFQ DELDDLQLFHEATLASSRGFSKISHLGTTNPTPKIAFLFLTNSDLVFAPLWQRFFQGN DHLFNVYVHADPYSKLSTPQWSVKANFIPAKRTERGSPTLVSAARRLLANAIIDDPFN LYFALLSQHCIPLHSFQYIYTSLLGNPTAASKSFLTQPSHKSSIEILSNEPHLHNRYV ARGEGVMLPEVSFQRFRVGSQFFVLAKRHALLVLKERKLWRKFKLPCLDLDSCYPEEH YFPTLLSMQDPRGCSHYTLTRVNWTDSVDGHPHTYHSPEVSPDLLHTLRKSNSSYSYF FARKFSPDCLKPLMAIADDVIFRD" mobile_element complement(16077732..16077910) /note="source:INTACT88_F12_scaffold_4-int 800 975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16078883..16078965 /note="source:CACAO_M_E5899_F5_scaffold_2 1122 1203" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16082882..16085771 /locus_tag="TCM_044345" /note="dbxref CacaoGD:Thecc1EG044345" mRNA join(16082882..16083065,16083160..16083326, 16083680..16083845,16083938..16084079,16084188..16084464, 16084586..16084784,16085082..16085771) /locus_tag="TCM_044345" /product="DNAJ" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034612001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041211t2" /inference="similar to AA sequence:ricco:29852.m001983" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5015t1" CDS join(16083177..16083326,16083680..16083845, 16083938..16084079,16084188..16084464,16084586..16084784, 16085082..16085401) /locus_tag="TCM_044345" /note="dbxref ricco:29852.m001983; paralog of Thecc1EG041211t2" /codon_start=1 /product="DNAJ" /protein_id="EOY19294.1" /db_xref="TAIR:AT5G22060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AW8" /translation="MFGRAPKKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDK GGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFQSFFGGN PFGGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNIICFKCKGKGSKSGA SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVVQE KKVLEVIVEKGMQNGQRITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEH TLTLTEALCGFQFILTHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKL YIHFTVDFPDSLIPDQCKALEAVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQ AQAQEAYEEDEDMHGGAQRVQCAQQ" gene 16086508..16094570 /locus_tag="TCM_044346" /note="dbxref CacaoGD:Thecc1EG044346" mRNA join(16086508..16086747,16092246..16092521, 16093711..16094570) /locus_tag="TCM_044346" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040052t1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" mobile_element complement(16088656..16090515) /note="source:CACAO_M_E71646_F4_scaffold_10 1 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16091858..16092139) /note="source:scaffold_8_CACTA_0859 17227 17505" /mobile_element_type="transposon:TIR/CACTA" CDS join(16092284..16092521,16093711..16093901) /locus_tag="TCM_044346" /note="paralog of Thecc1EG040052t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19295.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XX57" /translation="MRRSQCPQEMGCDTFGLTNAPAAFVDLMNRVFWAYLDRFVVVFI DDILEYSKSLEEHKQYLRIVLQSLREDKLYVKFLKSMDFVMGVPQVRGGYDAIWVIID WLTKSAHLLPVKTKYRVARYTQVYINEIVRLHGCSRNDSL" mobile_element 16098303..16101709 /note="source:INTACT506_F233_scaffold_3-int 6689 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16102323..16105279 /note="source:CACAO_M_E10603_F306_scaffold_2 4816 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16105384..16106311 /locus_tag="TCM_044347" /note="dbxref CacaoGD:Thecc1EG044347" mRNA 16105384..16106311 /locus_tag="TCM_044347" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003301t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 16105785..16106210 /locus_tag="TCM_044347" /note="paralog of Thecc1EG003301t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19296.1" /translation="MQLRNKIDNDKTVSFKASVMKRDIKILLYFVLEKMLPSTHINDV TRERGLLIYVIVIGKSINIVQLISNAILHIARTNQDGLWFPSLIAALCGRADVHWDKS EELLHRKAPIDVGFIRRYYDPSIASSNYSSTPRPRAAWP" mobile_element complement(16116315..16124162) /note="source:CACAO_M_E52812_F7_scaffold_8 2052 9912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16124489..16126017) /note="source:CACAO_M_E13038_F22_scaffold_3 10683 12210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16125229..16132508 /note="source:INTACT37_F117_scaffold_2-int 1723 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16134254..16134318) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6339 6404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16134326..16135698) /note="source:CACAO_M_E71642_F82_scaffold_10 1461 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16136184..16137643) /note="source:CACAO_M_E71642_F82_scaffold_10 1 1460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16137808..16138045) /note="source:CACAO_M_S_E7818_F60_scaffold_2 19418 19644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16140944..16141124) /note="source:scaffold_6_CACTA_0702 12 180" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16142551..16142763 /note="source:CACAO_M_E23991_F4_scaffold_4 3999 4232" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(16149738..16151759) /locus_tag="TCM_044351" /note="dbxref CacaoGD:Thecc1EG044351" mRNA complement(join(16149738..16150027,16150791..16150867, 16150986..16151326,16151459..16151759)) /locus_tag="TCM_044351" /product="Blue-copper-binding protein, putative" /inference="alignment:exonerate- protein:2:ricco:29852.m001997" /inference="similar to AA sequence:ricco:29852.m001997" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4596t1" CDS complement(join(16149925..16150027,16150791..16150867, 16150986..16151326,16151459..16151639)) /locus_tag="TCM_044351" /note="dbxref ricco:29852.m001997" /codon_start=1 /product="Blue-copper-binding protein, putative" /protein_id="EOY19297.1" /translation="MAMQSDFSTLFFILASAVAFRRCFCSERYVVGGAVWSIPSYPKF YNDWSSSIIFFIGDSLLFDFELGFYNVIQVPRIDYKDCIANNPIKVLNTGPAIVLLTD PGVLYFICNISNYCDLGQKVSITVQKQYTNLSPTPSPSPSPSSMPSAPPSPRFQPPET APVTFGYSNSSEAPILGLTIASPGPNHTSNDVFNLHHCQMWFFRVGFGHCACLDLHGF LAKVTSLAKSLAVGM" mobile_element 16153360..16153440 /note="source:CACAO_M_E65050_F7_scaffold_9 15387 15466" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16159294..16160309) /locus_tag="TCM_044352" /note="dbxref CacaoGD:Thecc1EG044352" mRNA complement(16159294..16160309) /locus_tag="TCM_044352" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s24960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023049t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s24960.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4588t1" mobile_element complement(16159545..16159630) /note="source:CACAO_M_E5899_F5_scaffold_2 20694 20786" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(16159664..16160152) /locus_tag="TCM_044352" /note="paralog of Thecc1EG023049t1" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY19298.1" /db_xref="Phytozome:POPTR_0010s24960.1" /db_xref="TAIR:AT2G35910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVJ1" /translation="MNSTEDSNDSTQIGKFAYAIGSSTGIIALLFMITLAAYFCNRAN QSTNPSSQHGTTSTDQDSVAREQGLDEETLSSYPNLLYSQAKLHKPDSVSSASSCSIC LGEYKDTDMLRLLPDCGHIFHLKCVDPWLRLHPTCPICRNSPVPTPLATPLAEVTPLA IC" mobile_element complement(16165835..16165958) /note="source:scaffold_5_CACTA_0602 1 120" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16165849..16168791) /note="source:CACAO_M_E71639_F143_scaffold_10 1 2943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16170499..16176206 /note="source:CACAO_M_E33018_F264_scaffold_4 1 5728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16178972..16179105 /note="source:CACAO_M_E11656_F17_scaffold_2 5912 6059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16184312..16186427) /note="source:CACAO_M_E34540_F17_scaffold_5 7820 9913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16187273..16188622) /note="source:CACAO_M_E34540_F17_scaffold_5 5779 7156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16188620..16191333 /note="source:CACAO_M_E50311_F328_scaffold_7 3289 5884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16191566..16192199 /note="source:CACAO_M_E50311_F328_scaffold_7 5780 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16192200..16192698) /note="source:CACAO_M_E34540_F17_scaffold_5 5275 5784" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16193664..16196991) /locus_tag="TCM_044357" /note="dbxref CacaoGD:Thecc1EG044357" mRNA complement(join(16193664..16194083,16196918..16196991)) /locus_tag="TCM_044357" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021681t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(16193746..16194051) /locus_tag="TCM_044357" /note="paralog of Thecc1EG021681t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19299.1" /translation="MSDKGKEIPNQKGANLIGDPIEEGHGAKLNVSMARLETDSLRKY CEHYKIEGMNFDSSREQMLNAVEQHFASQPPLNEQQVIPKFIYVARILKNAQGALNI" mobile_element complement(16199102..16202027) /note="source:CACAO_M_S_E122038_F134_scaffold_10 1 2926" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16202973..16214421 /locus_tag="TCM_044358" /note="dbxref CacaoGD:Thecc1EG044358" mRNA join(16202973..16203676,16206222..16206332, 16214249..16214421) /locus_tag="TCM_044358" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(16203538..16203676,16206222..16206332, 16214249..16214328) /locus_tag="TCM_044358" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19300.1" /translation="MICLTHTTLWHTCYNLIKGTQFVVKINNTAVSHFLTQLKLTSKQ TRCRGLTQDGRSSWLLLISLSSTKSKGKNMWKVPSVERSTCPFPISTHEVFMTHKLFF PIYFVVD" mobile_element 16204687..16206235 /note="source:CACAO_M_E24592_F195_scaffold_4 2287 3873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16206913..16208639) /note="source:CACAO_M_S_E99770_F60_scaffold_9 1 1728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16214367..16216016 /note="source:CACAO_M_S_E7105_F60_scaffold_2 3 1639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16216016..16216743 /note="source:CACAO_M_S_E7105_F60_scaffold_2 8463 9191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16216785..16218334 /note="source:CACAO_M_E49885_F60_scaffold_7 933 2490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16218323..16218439 /note="source:CACAO_M_E24592_F195_scaffold_4 1445 1563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16219987..16222705 /note="source:CACAO_M_E42521_F143_scaffold_5 1 2627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16222785..16225138 /note="source:CACAO_M_E23897_F318_scaffold_4 1 2356" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16225239..16228199 /note="source:INTACT743_F318_scaffold_2-int 2417 5383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16228200..16231688) /note="source:CACAO_M_E589_F323_scaffold_1 1 3465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16231689..16236933 /note="source:INTACT743_F318_scaffold_2-int 5384 10630" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16239512..16242529 /note="source:CACAO_M_E12060_F1_scaffold_2 511 3552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16242747..16243086 /note="source:INTACT1432F_F101_scaffold_9-int 2147 2478" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(16246427..16246627) /note="source:INTACT146F_F14_scaffold_2-int 14232 14433" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16250384..16253218 /note="source:CACAO_M_S_E101805_F5_scaffold_9 1765 4535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16252333..16255608) /note="source:INTACT701_F305_scaffold_10-int 8526 11808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16255604..16257685) /note="source:INTACT701_F305_scaffold_10-int 1195 3273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16256082..16258827 /note="source:CACAO_M_S_E101805_F5_scaffold_9 1774 4535" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16256364..16265437 /locus_tag="TCM_044364" /note="dbxref CacaoGD:Thecc1EG044364" mRNA join(16256364..16256454,16260982..16261041, 16261417..16261768,16264835..16265437) /locus_tag="TCM_044364" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS join(16261018..16261041,16261417..16261768, 16264835..16264842) /locus_tag="TCM_044364" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19301.1" /translation="MSVLISQKEIRKEQTEQGQEKKDGKGEKEVEQEDEVENELQREK EHLVGGKSGASSLGEFEEILVSDFIRYILKEVRADQVKQQAKMHQEVQLAPPKIEQTV REANPDKGKAIDIALITKKTASKGS" mobile_element 16263760..16264276 /note="source:CACAO_M_E49531_F1_scaffold_7 3300 3817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16264277..16264949 /note="source:CACAO_M_E72867_F9_scaffold_10 1 669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16265950..16267282) /note="source:CACAO_M_S_E17693_F1_scaffold_3 4 1346" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16273001..16273095) /note="source:CACAO_M_E5326_F22_scaffold_2 3413 3497" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16273605..16274938) /locus_tag="TCM_044366" /note="dbxref CacaoGD:Thecc1EG044366" mRNA complement(join(16273605..16273694,16274549..16274938)) /locus_tag="TCM_044366" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc608t596" CDS complement(join(16273622..16273694,16274549..16274742)) /locus_tag="TCM_044366" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19302.1" /translation="MLFKGVQGFKFVAGLIKENSNCRRRTVARLFWRGRKLAAEGKGG EEKSKGKERGSRCRKGLGQQGYNIILFKITFNKKINIHAKRAPL" gene 16274894..16282008 /locus_tag="TCM_044367" /note="dbxref CacaoGD:Thecc1EG044367" mRNA join(16274894..16275143,16275242..16275365, 16275498..16275573,16277263..16277358,16278261..16278777, 16280768..16280903,16281295..16282008) /locus_tag="TCM_044367" /product="Mitochondrial substrate carrier family protein" /inference="alignment:exonerate- protein:2:ricco:30160.m000433.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017032t1" /inference="similar to AA sequence:frave:gene04598" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc19881t1" CDS join(16275249..16275365,16275498..16275573, 16277263..16277358,16278261..16278777,16280768..16280903, 16281295..16281492) /locus_tag="TCM_044367" /note="dbxref frave:gene04598; paralog of Thecc1EG017032t1" /codon_start=1 /product="Mitochondrial substrate carrier family protein" /protein_id="EOY19303.1" /db_xref="TAIR:AT4G15010.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940F4" /translation="MDELLQNHLFATHAIAASGSVVFATALTYPLDTIKSLIQVGSSS SKQLTASQVINRVRALSGISGLYTGFEWLAWGKTFGLGARFGMYEVLTAFYKDGREDN YVYISEALMAGMAAGAVESLTSSPFELIKLRAQVTSASHFSRSTLVTENKAVVPAIAR LLCGYTLDMRTLNHSVGMLSILNSKHPNMVSAIQEYPWMMTGSGRPPPVYDVRRPSQI ISLEGWGALWRGLRSGVARDSIFGGIFFSTWQFLHRAMLDWKAVGMDPPPRYDEDIGP LSPLAVSLAAGFSGSVAAAVSHSFDTAKSRSQCIVLPKFISMERKLLKWKIPGKRFER ITGIHPADRTLLYRGIWPRMARSGIASFVLVGSYYLSINYLVSSN" misc_feature join(16275342..16275365,16275498..16276265) /locus_tag="TCM_044367" /note="Gene fragment of Thecc1EG044367t1; dbxref gnl|CacaoGD|Thecc1EG044367t1; quality class is mediumpartial-partof is thecc1eg044367t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc56t9; dbxref CacaoGD:Thecc1EG044368t1" mobile_element 16276094..16276434 /note="source:CACAO_M_E303_F1_scaffold_1 1 340" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16282847..16284577 /locus_tag="TCM_044369" /note="dbxref CacaoGD:Thecc1EG044369" mRNA 16282847..16284577 /locus_tag="TCM_044369" /product="Glutaredoxin family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29852.m002032" /inference="similar to AA sequence:Phytozome:GSVIVT01034614001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06950t00001" CDS 16283209..16284348 /locus_tag="TCM_044369" /codon_start=1 /product="Glutaredoxin family protein, putative" /protein_id="EOY19304.1" /db_xref="Phytozome:GSVIVT01034614001" /db_xref="TAIR:AT5G01420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BMG3" /translation="MKSVKGKFMKKLKSIKPVGYLKPDRVLQVFAIDGFIDSCPKTPN LNEQPKLFSKESEQDKIKESCVTVEQHPEVIDVVELMKDLEDDDEEMDWNDGVDDKEN IRPTTKANIDVVVEKENVNFPVKLETGNRRQSTPLSEIDVSSFRKPDLNTCTLFDPNL LAAFEQAVKEHIKMSEEERKARIEQENLEKSENEPPQKTRRIDDDLVDVVVDDDDDNE GDPLLGFEEKCPPGGDGSVILYTTTLKGIRKTFEGCNSVRFLLESFRVIFYERDISMH TEYKEELWRILDGKVMPPRLFIKGRYIGGAEEVLTLHEQGKLKLLFQGIPADTSNAPC EGCAGVRFVLCFKCNGSHRIIADDGLSSKCLQCNENGLIICPICC" gene 16286584..16292993 /locus_tag="TCM_044370" /note="dbxref CacaoGD:Thecc1EG044370" mRNA join(16286584..16286857,16287913..16288069, 16288265..16288849,16288935..16290412,16290602..16290924, 16291051..16292993) /locus_tag="TCM_044370" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g36320.1.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035549t1" /inference="similar to AA sequence:Phytozome:Glyma02g36320.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc8Loc523t3_G4" mobile_element complement(16287546..16292907) /note="source:INTACT1628F_F1_scaffold_10-int 1 5362" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(16287919..16288069,16288265..16288849, 16288935..16290412,16290602..16290924,16291051..16292434) /locus_tag="TCM_044370" /note="paralog of Thecc1EG035549t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19305.1" /db_xref="Phytozome:Glyma02g36320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BU14" /translation="MVGRARGRGRGNQPQQAELAEMRRMIDDLTRAVQALQRQEPVEA RIENPKEEYLDWEASLENYFEWKPMAENRKVLFVKLKLKGTALQWLKRVEEQRARQSK LKISTWEHMKSKLRKQFLPADYTMELYEKFHCLKQNNMTVEEYISEFNNLSIRVGLAE SNEQITSRYLAGLNHFIRDEMGVVRLYNIEDARQYALSAEKRILRYGARKPLYGTHWQ NNSEARRGYPTSQQNYQGAATINKTNRGGSNSHIRCFTCGENGHTSFAGPQRRVNLAE LREELEPVYDEYEEIEEIDVYPAQGESLVVRRVMTTTVNEEAEDWKRRSIFRTRVVCE GKVCDLVIDGGSMENIISKEAVNKLKLPTNKHPYPYKIGWLKKGHEVPVTTQYLVKFT MGDNLDDEALCDVVPMDVGHILVGRPWLYDHDMVHKTEPNTYSFYNDNKRYTSYPLKE ETKKSANSKINKITGYLSVENFEAEGSEMGIMYALVTKHLKSDQMGKSPQYPTEIQQL LKEFGELFNEDLPKSLPPLRSIQHAIDLVPGAALPNLPAYRMPPMQRVEVQRQVEELL EKGLVRESKSPCACPALLAPKKDGSWRMCVDSRAINKITIKYRFPIPRLDEMLDQLVG SRVFSKIDLKSEYHQIRMRDGDEWKTAFKTPDGLFEWLVMPFGLSNAPSTFMRVMAEV LKPFLNSFVVVYFDDILIYSHTKEKHLKHLRQVLEVLQKEQLYINLKKCSFMQPEVKD GFEWSHSAQKAFERVKALMTKALVLALPDFEKLFVVECDASHVGIGAVLSQDGRPIEF FSEKVTDSRRRYSTYDLEFYALVRAIRHWQHYLAYREFAVYSDHQALRRCKMLSVMST QVTGFEELKNQYSSDSYFSKIIADLQGSLQARNLPYRLHEAYLFKGNQLCIPEGYLRE QIIRELHGNGLGGHFGRDKTLAMVADRYYWPKMRRDVERLVKRCPTCLFGKGSAQNTG LYVPLPEPDAPWIHLSMDFVLGLPKTAKGFDSIFVVVDRFSKMAHFIPCFRTSDATHI AELFFCEVVRLHGIPTSIVSDRDVKFMGHFWRTLWRKFGTELKYSSTCHPQTDSQTEV VNRSLGNILRCLIQNNPKTWDLVKPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDL VPLPQEARVSNEGELFADHIQKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVL VYLRQERFPKGTYHKLKSRKFGPCKVLKKISSNAYLIELPPELQISHIFNVLDLYPFD GCDGTASTIDAQIQHLPIVKVEVIEDVIDVKEVRSRRGNRIDDF" gene complement(16292673..16299992) /locus_tag="TCM_044372" /note="dbxref CacaoGD:Thecc1EG044372" mRNA complement(join(16292673..16292958,16293513..16293836, 16294982..16295118,16295234..16295521,16295880..16296125, 16296203..16296347,16296439..16296589,16297544..16297613, 16297681..16299236,16299549..16299992)) /locus_tag="TCM_044372" /product="ATP-binding cassette sub-family A member 13, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019912001" /inference="similar to AA sequence:Phytozome:GSVIVT01019912001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11765t00001" CDS complement(join(16295243..16295521,16295880..16296125, 16296203..16296347,16296439..16296589,16297544..16297613, 16297681..16299213)) /locus_tag="TCM_044372" /codon_start=1 /product="ATP-binding cassette sub-family A member 13, putative" /protein_id="EOY19306.1" /db_xref="Phytozome:GSVIVT01019912001" /db_xref="TAIR:AT1G73970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HTS4" /translation="MARQVNTLFLEQWLRTCSGGISHTVSGHSSYSGSSSSSARAIIQ AWSELRDSLQNQTFDPYILQPLKTLFNSQTSLHVADPQAKLLLSVLSPQSFDLPSESY PILLRLLYIWVRKSARPSTVLIDSAVDVLSRVFTTEFGLKKSASFLAEGFLLLGAISF VPLVSESSKIVCLELLCRLLEEDHQFVRTWEEIIPDVLAGIGYALSSSLDVHFVRVLD SLLGIWGKEYGPPSTVPTALMILHMVEWVVSGFIKSRSFKKIQAFSQWTFGAPRASYL PFALVMVAAGVLRASRYAASGQGLEIVSTLRISAENGIVSIAQSFVSKTKEFVNSDSD PMDSLLLQCMSLALARSGAISFSAPVLVCLASALLREIFPLRHLYMQILQFLHSIGSE LGLNEIKKHLDSALFKEAGAITGVFCNQYVSADEESKSLVESFIWDYCQDVYSGHRQV ALFLRGRKDELLADLEKIAESAFLMVVVFALAVTKHRLNSNLSQEMQREKAVQILVLL LLRENEAACVSFVESVPSYVDLTTWQDFSSEQKMEYEWSKDEVQTARVLFYVRVIPTC IEQLPARVFRMVVAPTMFLYMGHPNGKVARASHSMFVAFMSSGKDSEDERVLLKEQLV FYYMQRSLEGFPGITPFEGMASGVVAFVRHLPAGSPATFYCINCLVDNANKLCSDAST LKAEEWKNWQGGLEPCKKILELLLRLISLVDIQVLPALMKSLAQLTVQLPKTGQIMVL NELYAQVAESDDVTRKPTLVSWLQSLSYLSSQAKSEVMTSKGRESEESSASPGATEPL DSDKINARL" gene 16300354..16310713 /locus_tag="TCM_044373" /note="dbxref CacaoGD:Thecc1EG044373" mRNA join(16300354..16300949,16301153..16301213, 16301306..16301438,16301627..16301750,16303713..16303769, 16303892..16303988,16304487..16304694,16307243..16307303, 16307721..16308148,16310676..16310713) /locus_tag="TCM_044373" /product="5'-nucleotidase / magnesium ion binding protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29852.m002034" /inference="similar to AA sequence:Phytozome:GSVIVT01034599001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02354t00002" CDS join(16300596..16300949,16301153..16301213, 16301306..16301438,16301627..16301750,16303713..16303769, 16303892..16303988,16304487..16304694,16307243..16307303, 16307721..16307783) /locus_tag="TCM_044373" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="5'-nucleotidase / magnesium ion binding protein isoform 1" /protein_id="EOY19307.1" /db_xref="Phytozome:GSVIVT01034599001" /db_xref="TAIR:AT2G38680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ITW1" /translation="MLSSQSLKSQMSYRLRSSSSSSSIIDIECSALSKLGFFRNSRQL LSPFLFLPSFFSPLILFFLFAIVFRRVWCCSQNTKTKMDKEEDHHLAKFTVINDPLSL NHKIAAIRNAGPSKLQVIADFDATLTRYWINGQRGQSSHGLLQQGNPEFDAKRQALLQ YYHPLEFSPTIPLEEKTKLMEEWWGKTHGLLIEGGLTYDAIKNSVANANIAFRDGVVE LFEFLEERDVPVLIFSAGLADIIEEVLRQKVHRSFMNIKIVSNRMLFDDSGHLVSFKG KLIHSLNKNEHALDMAAPLHDQLGDNDGPVTDNASVKQRTNVLLLGDHIGDLGMSDGL NYENRISVGFLNDNIEKNLESYRNSFDIVYLNDTPMWGVVKLATELCSVEC" mRNA join(16300606..16300720,16300805..16300949, 16301153..16301213,16301306..16301438,16301627..16301750, 16303713..16303769,16303892..16303988,16304487..16304694, 16307243..16307303,16307721..16308226) /locus_tag="TCM_044373" /product="5'-nucleotidase / magnesium ion binding protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29852.m002034" /inference="similar to AA sequence:Phytozome:GSVIVT01034599001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4658t1; inference alignment:Newbler:10:TSA:cgbaB_g02354t00002" CDS join(16300626..16300720,16300805..16300949, 16301153..16301213,16301306..16301438,16301627..16301750, 16303713..16303769,16303892..16303988,16304487..16304694, 16307243..16307303,16307721..16307783) /locus_tag="TCM_044373" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="5'-nucleotidase / magnesium ion binding protein isoform 2" /protein_id="EOY19308.1" /db_xref="Phytozome:GSVIVT01034599001" /db_xref="TAIR:AT2G38680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ITW1" /translation="MSYRLRSSSSSSSIIDIECSALSKLGFFRNSRVWCCSQNTKTKM DKEEDHHLAKFTVINDPLSLNHKIAAIRNAGPSKLQVIADFDATLTRYWINGQRGQSS HGLLQQGNPEFDAKRQALLQYYHPLEFSPTIPLEEKTKLMEEWWGKTHGLLIEGGLTY DAIKNSVANANIAFRDGVVELFEFLEERDVPVLIFSAGLADIIEEVLRQKVHRSFMNI KIVSNRMLFDDSGHLVSFKGKLIHSLNKNEHALDMAAPLHDQLGDNDGPVTDNASVKQ RTNVLLLGDHIGDLGMSDGLNYENRISVGFLNDNIEKNLESYRNSFDIVYLNDTPMWG VVKLATELCSVEC" gene <16310958..16311657 /locus_tag="TCM_044375" /note="dbxref CacaoGD:Thecc1EG044375" mRNA join(<16310958..16311297,16311607..16311657) /locus_tag="TCM_044375" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is partial5; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc566t2_C2" CDS join(<16310960..16311297,16311607..16311616) /locus_tag="TCM_044375" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19309.1" /translation="DSPILFSSFLLSSSSSPTDPSGQPLSLNPLSLTWSPAPSPSPAW AFPAAVPSFFPFPLFFSSPSFCRQFPLFLKKPSQRCLLHSKNFINTSKSILSVSPTFC LSLSLIIHSISFI" gene 16311020..17216894 /locus_tag="TCM_044376" /note="dbxref CacaoGD:Thecc1EG044376" mRNA join(16311020..16311240,17208702..17208781, 17209603..17210811,17211908..17212075,17213263..17213942, 17214311..17214590,17214790..17215079,17215650..17216467) /locus_tag="TCM_044376" /product="GC-rich sequence DNA-binding factor-like protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g03420.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s00320.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc274t58; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc274t58" gene 16311036..16314054 /locus_tag="TCM_044377" /note="dbxref CacaoGD:Thecc1EG044377" mRNA join(16311036..16311297,16311518..16311571, 16311661..16311811,16311940..16312056,16312263..16312329, 16312419..16312567,16312741..16312874,16312970..16313144, 16313798..16314054) /locus_tag="TCM_044377" /product="RAB geranylgeranyl transferase beta subunit 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01400.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019372001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08285t00001" CDS join(16311518..16311571,16311661..16311811, 16311940..16312056,16312263..16312329,16312419..16312567, 16312741..16312874,16312970..16313144,16313798..16313898) /locus_tag="TCM_044377" /codon_start=1 /product="RAB geranylgeranyl transferase beta subunit 1" /protein_id="EOY19312.1" /db_xref="Phytozome:GSVIVT01019372001" /db_xref="TAIR:AT5G12210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T610" /translation="MGELAVEKHVEYILAVEKRKDSFESVVMDHLRLNGAYWGLTTLD LLGKLDTVNADEVISWIMKCQHESGGFAGNIGHDPHILYTVSAVQVLALFNKLDVLDI DKVATYITGLQNEDGSFSGDMWGEVDTRFSYIAICCLSILRRLDKINVEKAVNYIVSC KNLDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGR PEKLPDVCYSWWVLSSLIMIDRVHWIDKGKLFKFILDCQDVENGGISDRPDDAVDVFH TYFGVAGLSLLEYPGLKAIDPAYALPVDVVNRIFFSADN" gene complement(16313769..16324686) /locus_tag="TCM_044378" /note="dbxref CacaoGD:Thecc1EG044378" mRNA complement(join(16313769..16314077,16315295..16315871, 16318922..16319221,16319749..16319788,16320728..16321079, 16324667..16324686)) /locus_tag="TCM_044378" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25070.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01550.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12621t00001" CDS complement(join(16315524..16315871,16318922..16319221, 16319749..16319788,16320728..16320957)) /locus_tag="TCM_044378" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19313.1" /db_xref="Phytozome:POPTR_0008s01550.1" /db_xref="TAIR:AT5G22040.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKK3" /translation="MKRPSAYGDPNVNPYATSEMQHMSAQRIVQHNAAMNNFSVEKDA KLRFSRVDGQWQRNRDAPKLHDQMPSHAFNQGKEKRGCEQEQITKLVVPSLEWFCICI FLSIYYGSVQEVNTTRSYHQGQALDLLENSANVENNAQSREQDIEIRYEDNRSPLTFE GLERKFHDEIMKLVKEQSDAEDKEIARHKEKIMEINTRYQEKLSALRAQHANRREEVL LKELQTRLHQYQQAGISSHLNSGLQDARGYGGTAVAAAAGETRGYTTGQFHSYRDQSR FNAGQTTQGSEVRVPYPEGHFNHTSAQYF" mobile_element complement(16325533..16326156) /note="source:CACAO_M_E69532_F143_scaffold_9 2371 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16326143..16326347 /note="source:scaffold_4_CACTA_0498 7548 7752" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16326448..16326998) /note="source:scaffold_4_CACTA_0498 2897 3447" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16328043..16328752 /note="source:scaffold_4_CACTA_0498 10038 10746" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16329134..16329345) /note="source:scaffold_4_CACTA_0498 2568 2779" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16329343..16331722) /note="source:CACAO_M_E69532_F143_scaffold_9 1 2380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16332848..16333228 /note="source:scaffold_6_CACTA_0700 7285 7631" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16332955..16333752) /note="source:scaffold_8_CACTA_0857 191 1013" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16333230..16333776 /note="source:scaffold_6_CACTA_0700 10007 10522" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16335426..16336699 /note="source:CACAO_M_E22641_F53_scaffold_3 1326 2600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16336779..16336982) /note="source:scaffold_8_CACTA_0857 1 207" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16346678..16349452) /note="source:CACAO_M_E71615_F87_scaffold_10 1 2775" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16353607..16361005 /locus_tag="TCM_044380" /note="dbxref CacaoGD:Thecc1EG044380" mRNA join(16353607..16353748,16354195..16355204, 16356278..16356421,16356572..16356724,16358387..16358502, 16358738..16358905,16359821..16360045,16360317..16361005) /locus_tag="TCM_044380" /product="Calcium dependent protein kinase 1" /inference="alignment:exonerate- protein:2:ricco:29852.m002000" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023099t1" /inference="similar to AA sequence:ricco:29852.m002000" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4649t1" CDS join(16354394..16355204,16356278..16356421, 16356572..16356724,16358387..16358502,16358738..16358905, 16359821..16360045,16360317..16360451) /locus_tag="TCM_044380" /note="dbxref ricco:29852.m002000; paralog of Thecc1EG023099t1" /codon_start=1 /product="Calcium dependent protein kinase 1" /protein_id="EOY19314.1" /db_xref="TAIR:AT5G04870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38870" /translation="MGNSCVGPSISKNGFFQSVSAAMWRSRIPDDSVSHTNGETGSEV ASKEPESPLPVQNKPPEQVTMPKPETKPENKPETNPEKPSKPKSPHMKRVSSAGLRTE SVLQRKTGNFKEYYSLGRKLGQGQFGTTFLCVEKATGKEYACKSIAKRKLVTDDDVED VRREIQIMHHLAGHPNVISIKGAYEDAVAVHVLMELCAGGELFDRIVQRGHYTERKAA ALTRTIVGVVEACHSLGVMHRDLKPENFLFVNQQEDSLLKTIDFGLSIFFKPGEKFTD VVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLSGVPPFWAESEQGIFEQVLHGDLD FESDPWPSISESAKDLVRRMLVRDPRRRLTAHEVLCHPWIQIDGVAPDKALDSAVLSR MKQFSAMNKLKKMALRVIAESLSEEEIAGLKEMFKMIDTDNSGQITFEELKAGLKRVG ANLKESEIYDLMKAADVDNSGTIDYGEFVAATLHLNKIEREDHLFAAFSYFDKDGSGY ITPDELQQACEEFGIEDVRLEEMIREVDQDNDGRIDYNEFVAMMQKGNLASNVAGAGK KGLQNSFSIGFREALKL" gene 16358877..16359845 /locus_tag="TCM_044381" /note="dbxref CacaoGD:Thecc1EG044381" mRNA join(16358883..16358905,16359507..16359682, 16359821..16359845) /locus_tag="TCM_044381" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc201t2_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc240t1" CDS 16359559..16359675 /locus_tag="TCM_044381" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY19315.1" /translation="MSINLRHGMPSTISLSQDNSGRLNSSFTRLIQRGASSS" gene 16361399..16373660 /locus_tag="TCM_044382" /note="dbxref CacaoGD:Thecc1EG044382" mRNA join(16361399..16361602,16362819..16363235, 16363911..16363957,16366612..16366724,16367179..16367368, 16367491..16367793,16367878..16367970,16368057..16368779, 16369045..16369565,16370617..16372431,16372513..16373660) /locus_tag="TCM_044382" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01540.1" /inference="similar to AA sequence:Phytozome:Glyma20g17010.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4696t2" mobile_element complement(16361826..16362200) /note="source:CACAO_on_E33_A_scaffold_3 7606 8002" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(16362950..16363235,16363911..16363957, 16366612..16366724,16367179..16367368,16367491..16367793, 16367878..16367970,16368057..16368779,16369045..16369565, 16370617..16372431,16372513..16372675) /locus_tag="TCM_044382" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19316.1" /db_xref="Phytozome:Glyma20g17010.1" /db_xref="TAIR:AT3G10650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAF4" /translation="MATAREGSNPYDGGFGAGGKFRKRPFRRTTQTTPYDRPPTAIRN PNASGDRNGWLSKLLDPAQRLITSSAHRLFASVFRKRLPPPPPHPPEAPKPETNEEVR ENPPEAASTDSPVLEVANTGCDNSSNHTDGDGVAELEEILKQKTFTRSEIDRLTTLLH SRTVDIPGGNEEKRSDVRSVVLHDRKEEFPKTPVRENGTENRLISTPVVTSTVLDEDV ASPAELAKAYMGSRPSKVSISTLALHNQVPRGDLALLSNKNFHSKSPTMSLVPRPSGH VGNLGNGFVTPRSRGRSAVYSMARTPYSRVNSAAVLKGAGTASDAFGGPLSSSQSAWK QNRISGSRQGALKRGSSVLDNDIGSVGPIRRIRQKSNLLSSKNLSLPASGGPLSAYEA GSSSAGLDTQHHVSLRETPALMGEVRQSITDALAENGDNSTPGTHFTPVPSKSSEMAS KILQQLDKLVSPREKSPTKLSPSMLHGQALKSLENVDSSKFLENMHAIGKLGGSHAAL PDVRDSTSHKQDKVEENGSTKLVDFPEKSGPAVNGVDTDSLMKDNVPHVKAADSAVIK SVVQLPQQKRWAFQMSAHEDYLDLDEDDYINGAASATFVEGREKLDNCVMGSKGAAAE AILVEKPSSLSEVKPISSLVLSKKPDLGTSDGSVVEKNDGITFPVAQVATSSVQAILS DTQSTLTANKDVASKESNATSPMLSFGEKSVPAKQPHAAAPTFGFASTNVGEVSSVSG SSGVKIVTSSDQKLENSISFTSTAPSTTNSSSDKSDKENTLNGVFFRTVETAISSAVS TSTSAGSIFKFGASADSSTLNNGSLASSPFSFCSTTPSLVSSNGQSSSISSTNCTSFT TNSNTAAAATISTTANATISSTSSPSMPASVPSFMAAPVFKFSSSGDPSTSASTLSAT SGEATEAKTQSTSFGNVAIVPFGSTSAFTSSGSSIFGGKSEVTCTVSSTSGGTPAAVT SSVSSSFSGTSSKITNSGSGFFSSTFSTITSTGNGIFGDTTATKGITSTGNGIFGDTT ATKGPGSSVFGGTCLSKASTGSSSFSTTSAITSAGSSIFGFSAPAASTATIQTQGSNP FNAVNTQASAAGTGIATSTQSMPIQFASSASSPSFGLAGNTTISSGSSVFGSSVSEAK PFGSGATFGMSSSSSEANSLSSSSGIASGTFGSNWQAPKAPLFGSTFSPSSSSGFSFG SSASITAPSNAPTIFGSSTGASSSSMFSFTSAAAATSSQPVFGNTSPGLVFGSTSSSN NDQMEDSMAEDTVQASPLTIATFGQQPISPPTSGFIFGASNPSGANSFQFGGQPSMAT SQNSSPFQASGSLEFGGSGSFSLGTGGSDKSARKFVKVRKQRKKRRTAYDCCFRWKPY GIHWVVAEGLSGPGSALVRSFTVSLLSLEKLVTILYGSC" gene complement(16373664..16377734) /locus_tag="TCM_044384" /note="dbxref CacaoGD:Thecc1EG044384" mRNA complement(join(16373664..16374701,16375490..16375574, 16375688..16375694,16375939..16376044,16377206..16377259, 16377380..16377437,16377595..16377734)) /locus_tag="TCM_044384" /product="Prefoldin 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032270001" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400024021" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06175t00001" CDS complement(join(16374588..16374701,16375490..16375574, 16375688..16375694,16375939..16376044,16377206..16377259, 16377380..16377403)) /locus_tag="TCM_044384" /codon_start=1 /product="Prefoldin 1" /protein_id="EOY19317.1" /db_xref="Phytozome:PGSC0003DMP400024021" /db_xref="TAIR:AT2G07340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AF7" /translation="MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRNKEGEKKRAYLT LEELRQLSDDTNTYKSIGRTFVLEPKPVLMNEQEQKLKDSESAIASLQTSKEYLEKQM AEVENNLRELLQQDPGLARQIMSMSVM" gene complement(16379450..16384284) /locus_tag="TCM_044386" /note="dbxref CacaoGD:Thecc1EG044386" mRNA complement(join(16379450..16380025,16380536..16380663, 16382663..16384138)) /locus_tag="TCM_044386" /product="FASCICLIN-like arabinogalactan protein 16 precursor isoform 1" /inference="alignment:exonerate- protein:2:ricco:29854.m001118" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023101t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01310.4" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4660t2; alternateUTRof:Thecc1EG044386t1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8005t5" mRNA complement(join(16379542..16379919,16380536..16380663, 16382663..16384284)) /locus_tag="TCM_044386" /product="FASCICLIN-like arabinogalactan protein 16 precursor isoform 1" /inference="alignment:exonerate- protein:2:ricco:29854.m001118" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023101t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01310.4" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8005t5" CDS complement(join(16380587..16380663,16382663..16383950)) /locus_tag="TCM_044386" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG023101t1" /codon_start=1 /product="FASCICLIN-like arabinogalactan protein 16 precursor isoform 1" /protein_id="EOY19318.1" /db_xref="Phytozome:POPTR_0008s01310.4" /db_xref="TAIR:AT5G06390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93W32" /translation="MALLLFFNFLLLLSGLRFSLALQETPSTTTHSGQINSNSVLVAL LDSHYTELAELVEKALLLQTLEETVGKHNITIFAPKNEALERDLDPEFKRFLLEPGNL KSLQTLLLYHIVPSRIEPHSWPKSTSDSTRHRTLSNDRVQLSSEDSSGAKFIGTAKVI NPNAVDRPDGVIHGIEQLLIPRSVQQDFNNRRSLRSISAVKPEGAPEVDPRTHRLKKP APPVLPGAPPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFNGMRQVKDFIQTLLQYGGY NEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYH VIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQEADGSVKFGHADGSAYLFDPDIY TDGRISVQGIDGVLFPPEEKTKDEKKTIKVATAKPRRGKLLEVACRMLVAIGQDSRFS TCHL" CDS complement(join(16380587..16380663,16382663..16383950)) /locus_tag="TCM_044386" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG023101t1" /codon_start=1 /product="FASCICLIN-like arabinogalactan protein 16 precursor isoform 1" /protein_id="EOY19319.1" /db_xref="Phytozome:POPTR_0008s01310.4" /db_xref="TAIR:AT5G06390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93W32" /translation="MALLLFFNFLLLLSGLRFSLALQETPSTTTHSGQINSNSVLVAL LDSHYTELAELVEKALLLQTLEETVGKHNITIFAPKNEALERDLDPEFKRFLLEPGNL KSLQTLLLYHIVPSRIEPHSWPKSTSDSTRHRTLSNDRVQLSSEDSSGAKFIGTAKVI NPNAVDRPDGVIHGIEQLLIPRSVQQDFNNRRSLRSISAVKPEGAPEVDPRTHRLKKP APPVLPGAPPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFNGMRQVKDFIQTLLQYGGY NEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYH VIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQEADGSVKFGHADGSAYLFDPDIY TDGRISVQGIDGVLFPPEEKTKDEKKTIKVATAKPRRGKLLEVACRMLVAIGQDSRFS TCHL" mobile_element complement(16384629..16384792) /note="source:CACAO_on_E33_A_scaffold_3 7403 7597" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(16385044..16385117) /note="source:CACAO_on_E33_A_scaffold_3 11616 11692" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(16386059..16389050) /note="source:CACAO_M_S_E14990_F87_scaffold_2 1 2525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16389051..16389243) /note="source:CACAO_M_S_E144909_F278_scaffold_10 1 193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16389481..16390811 /note="source:CACAO_M_S_E5860_F197_scaffold_2 173 1512" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16390819..16391791) /note="source:CACAO_M_S_E122136_F76_scaffold_10 5239 6188" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16393858..16394658) /locus_tag="TCM_044388" /note="dbxref CacaoGD:Thecc1EG044388" mRNA complement(join(16393858..16394150,16394236..16394658)) /locus_tag="TCM_044388" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage" CDS complement(join(16394027..16394150,16394236..16394381)) /locus_tag="TCM_044388" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19320.1" /translation="MRESASSGESVASGEKRVEDDDVDNGKEKGEGDVAVRKERPDDM AISGWSMKGIREGEKAGKVMKGQMTKYNVTKDGSMAERKGSNMGS" gene 16398169..16399082 /locus_tag="TCM_044389" /note="dbxref CacaoGD:Thecc1EG044389" mRNA 16398169..16399082 /locus_tag="TCM_044389" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044391t3" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9595t12" CDS 16398402..16398821 /locus_tag="TCM_044389" /note="paralog of Thecc1EG044391t3" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19321.1" /translation="MGWCLYNEVAYLHFHESLFEHHIVYSSHQQMDANPCLLVFMLVL GLALLLSHTTHVVEAVSAPSSADANVPSFDFPYKFKAVSKRLEFGRLRPPPPIPHRPP QFKPPIRRPPPRQRPYKRKSPPPLLPRSPPPPSQPPV" mobile_element complement(16401008..16405107) /note="source:CACAO_M_S_E38262_F319_scaffold_4 9125 13255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16405108..16405480) /note="source:INTACT584_F15_scaffold_3-int 10917 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16408329..16408766 /note="source:CACAO_M_E3859_F82_scaffold_1 3929 4366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16408329..16408354 /note="source:INTACT407F_F356_scaffold_4-int 7917 8168" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16408867..16409712 /note="source:INTACT659F_F82_scaffold_5-int 4527 5373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16409713..16410896 /note="source:CACAO_M_S_E38262_F319_scaffold_4 3023 4235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16410998..16413290) /note="source:scaffold_4_CACTA_0503 3071 5345" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16413291..16413648 /note="source:CACAO_M_S_E121311_F85_scaffold_10 1228 3838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16413634..16414359 /note="source:CACAO_M_E49857_F85_scaffold_7 19318 20043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16414359..16415354) /note="source:CACAO_M_E49195_F17_scaffold_6 8325 9318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16415455..16415985) /note="source:CACAO_M_E53587_F207_scaffold_8 10336 10867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16416086..16416558) /note="source:CACAO_M_E49195_F17_scaffold_6 7304 7775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16416659..16417977 /note="source:CACAO_M_E23040_F82_scaffold_4 1958 3276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16417998..16420243) /note="source:CACAO_M_S_E64699_F85_scaffold_5 1 2244" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16422159..16423494 /locus_tag="TCM_044391" /note="dbxref CacaoGD:Thecc1EG044391" mRNA join(16422159..16422916,16423016..16423376) /locus_tag="TCM_044391" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044396t1" /note="transcript variant 1; alternatively spliced; quality class is medium, express is medium, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9595t12" mRNA join(16422301..16422920,16422979..16423189) /locus_tag="TCM_044391" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044396t1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8207t12; alternateUTRof:Thecc1EG044391t1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9595t12; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9929t4" mRNA join(16422307..16422916,16423021..16423494) /locus_tag="TCM_044391" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044396t1" /note="transcript variant 2; alternatively spliced; quality class is medium, express is medium, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5294t2; alternateUTRof:Thecc1EG044391t1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9595t12; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9929t4" CDS 16422401..16422877 /locus_tag="TCM_044391" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044396t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19322.1" /translation="MGWCLYNEVAYLHFHESLFEHDIVYSSHQQMDANPCLLVFMLVL GLGLGLVLSHTTHVVEANEAVSAPSSADANVPSFDFPYKFKAVSKRLKSNPFLPTPSF PKYYVHAWIPPKFPWKPPKFPWKPPRYPQKPPRSPQKPPRRKKYWNKSPPPPPPRL" CDS 16422401..16422877 /locus_tag="TCM_044391" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG044396t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19323.1" /translation="MGWCLYNEVAYLHFHESLFEHDIVYSSHQQMDANPCLLVFMLVL GLGLGLVLSHTTHVVEANEAVSAPSSADANVPSFDFPYKFKAVSKRLKSNPFLPTPSF PKYYVHAWIPPKFPWKPPKFPWKPPRYPQKPPRSPQKPPRRKKYWNKSPPPPPPRL" CDS 16422401..16422877 /locus_tag="TCM_044391" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG044396t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19324.1" /translation="MGWCLYNEVAYLHFHESLFEHDIVYSSHQQMDANPCLLVFMLVL GLGLGLVLSHTTHVVEANEAVSAPSSADANVPSFDFPYKFKAVSKRLKSNPFLPTPSF PKYYVHAWIPPKFPWKPPKFPWKPPRYPQKPPRSPQKPPRRKKYWNKSPPPPPPRL" gene 16424330..16425346 /locus_tag="TCM_044392" /note="dbxref CacaoGD:Thecc1EG044392" mRNA 16424330..16425346 /locus_tag="TCM_044392" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.44 coverage" CDS 16424509..16424709 /locus_tag="TCM_044392" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19325.1" /translation="MWRKSLYGWETGKRDSESRRNWKKKRWFGEEGKLLGGSKSQYST VMVQIFIFLLFFFYFWIVMFYF" mobile_element complement(16427446..16427990) /note="source:scaffold_1_CACTA_0009 2222 2727" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16427974..16428037 /note="source:CACAO_M_E5899_F5_scaffold_2 20725 20787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16428975..16429551) /note="source:scaffold_1_CACTA_0009 13278 13828" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16429258..16432956 /note="source:CACAO_M_E33977_F20_scaffold_4 5392 9073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16433120..16433399) /note="source:CACAO_Mutator_E1410_scaffold_6 5707 5987" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16433151..16433430 /note="source:CACAO_Mutator_E1410_scaffold_6 5707 5987" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16433495..16433625 /note="source:CACAO_on_E193_scaffold_6 3416 3551" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(16433508..16433667) /note="source:CACAO_Mutator_E161_scaffold_1 6073 6232" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16433665..16433704 /note="source:INTACT1332F_F13_scaffold_8-int 355 394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16434029..16434144) /note="source:CACAO_Mutator_E161_scaffold_1 5878 5993" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16434138..16434258 /note="source:CACAO_Mutator_E1410_scaffold_6 426 546" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(16434710..16434782) /note="source:CACAO_Mutator_E1888_scaffold_9 362 436" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(16434758..16434988) /note="source:CACAO_Mutator_E161_scaffold_1 4 232" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16434783..16435899 /note="source:CACAO_M_E33977_F20_scaffold_4 14707 15708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16435962..16437666) /note="source:CACAO_Mutator_E1888_scaffold_9 3236 4979" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16437693..16439002 /note="source:CACAO_Mutator_E1012_scaffold_5 5648 6944" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16438604..16442214 /note="source:CACAO_M_E33977_F20_scaffold_4 13008 16546" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16445567..16453322) /locus_tag="TCM_044395" /note="dbxref CacaoGD:Thecc1EG044395" mRNA complement(join(16445567..16446439,16447730..16447783, 16449809..16450038,16453029..16453322)) /locus_tag="TCM_044395" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(16445989..16446439,16447730..16447783, 16449809..16450038,16453029..16453169)) /locus_tag="TCM_044395" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19326.1" /translation="MVMNLGSGDVNDRFNKQGNGRPKGSKNKPKVSIVGRMVWSSTKL SEVVFVNVGIIITYEKSIMFWRDAWMRDLVVKLEFLRLFALAQNKDEKLCEYGQWMEI GWQWQIELRRQLFGWEYEQWTLSIPKLQFTSNSFKNHFKRDVIWSEVKWSEMIESYED IYRRPSLVSIAPKQKPAREKSMWEAPSLGWVKFDVDGASTRNPNQTGIEGIVRNYKGD ILLRFSKSMGVCDANCAEIMAVREAFILFTKILRQTHLNLWIESDSTNVIRWLKDLLK TPWRHRQCMGQIGCF" gene 16447447..16465614 /locus_tag="TCM_044396" /note="dbxref CacaoGD:Thecc1EG044396" mRNA join(16447447..16447659,16465112..16465614) /locus_tag="TCM_044396" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044391t3" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage" mobile_element complement(16448245..16448319) /note="source:CACAO_M_E5899_F5_scaffold_2 20715 20792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16449734..16449811 /note="source:CACAO_M_E70891_F369_scaffold_10 12334 12411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16453318..16455870) /note="source:CACAO_M_E58324_F9_scaffold_9 7664 10232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16457162..16457497 /note="source:CACAO_M_E23991_F4_scaffold_4 16827 17158" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16457499..16461240 /note="source:CACAO_M_E23991_F4_scaffold_4 6131 9874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16461245..16462549 /note="source:CACAO_M_E23991_F4_scaffold_4 332 1705" /mobile_element_type="retrotransposon:LTR/Copia" CDS 16465159..16465572 /locus_tag="TCM_044396" /note="paralog of Thecc1EG044391t3" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19327.1" /translation="MGWCLYNESLFEHHIVYSTHQEMDANPCLLVFKLIFGLGLLLSH TTHVVEANEAVSAPSSADANVPSFHFPYKFKAVSKRLKSPQLPTPPSPTPNGDVHTRT APMHQYNRKSPPRQLSRSPSPPPPPPPPSPLEPPV" gene complement(16465620..16467692) /locus_tag="TCM_044398" /note="dbxref CacaoGD:Thecc1EG044398" mRNA complement(join(16465620..16466313,16467450..16467692)) /locus_tag="TCM_044398" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(join(16466220..16466313,16467450..16467568)) /locus_tag="TCM_044398" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19328.1" /translation="MRELMLSLTGFRSAFGVMSAYRDVAAVVTGSMGVSGRDMRSSNY SDVTPKKDLNQNRKRKREKTLKRPNS" mobile_element 16467767..16470288 /note="source:scaffold_4_CACTA_0503 3649 6180" /mobile_element_type="transposon:TIR/CACTA" gene complement(16467787..16470422) /locus_tag="TCM_044399" /note="dbxref CacaoGD:Thecc1EG044399" mRNA complement(join(16467787..16467966,16468832..16468911, 16469539..16469629,16470290..16470422)) /locus_tag="TCM_044399" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021663t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4655t1" CDS complement(join(16467937..16467966,16468832..16468911, 16469539..16469629,16470290..16470364)) /locus_tag="TCM_044399" /note="paralog of Thecc1EG021663t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19329.1" /translation="MRDKFEKVEANIEKLGSKKDELRGEQENKGEKKNKNLGGEIQGK IGENSRKQVTKGGEQITLVKVPKLCLKTGIRSTSTPRTAQDSCLIVD" mobile_element 16470827..16473147 /note="source:CACAO_PIF_E119_scaffold_3 6767 8945" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(16473202..16473512) /note="source:CACAO_Mutator_E206_scaffold_1 11415 11725" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(16473511..16474539) /note="source:CACAO_PIF_E62_scaffold_2 7108 8188" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(16475347..16475412) /note="source:CACAO_M_E5326_F22_scaffold_2 3413 3479" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16479242..16484545) /locus_tag="TCM_044402" /note="dbxref CacaoGD:Thecc1EG044402" mRNA complement(join(16479242..16479915,16480597..16480662, 16481227..16481326,16481726..16481906,16482458..16482641, 16482819..16482988,16483119..16483152,16483274..16483371, 16483834..16484545)) /locus_tag="TCM_044402" /product="Pre-mRNA cleavage complex II family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008098001" /inference="similar to AA sequence:Phytozome:GSVIVT01008098001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b042839t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4719t1" mRNA complement(join(16479452..16479915,16480597..16480724, 16481227..16481326,16481726..16481906,16482458..16482641, 16482819..16482988,16483119..16483152,16483274..16483371, 16483834..16484545)) /locus_tag="TCM_044402" /product="Pre-mRNA cleavage complex II protein family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008098001" /inference="similar to AA sequence:Phytozome:GSVIVT01008098001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4719t1" CDS complement(join(16479854..16479915,16480597..16480662, 16481227..16481326,16481726..16481906,16482458..16482641, 16482819..16482988,16483119..16483152,16483274..16483371, 16483834..16484021)) /locus_tag="TCM_044402" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pre-mRNA cleavage complex II family protein isoform 2" /protein_id="EOY19331.1" /db_xref="Phytozome:GSVIVT01008098001" /db_xref="TAIR:AT5G11010.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R907" /translation="MDSKLESGSSTANIYIPEEWSEAADSIAYDSVTSPPPIAFICGA KNSGKTTFSRLLLNILLQRYQKVAYLDADVGQPEFTAPGFLSLTVVDKLTADLAIPCL KTPERCFFFGDISSKRDPSAYLKYAFTLYDYYRKEYCTFDESELAGRTELPLVVNTPG WVKGIGYEILVDMLKYISPTHVVKINISVGSKNLPGGAFWLDGDSDGMVNIIEIKSAC QDSLNRSVLVQKDARLLRDLRIMAYFRQIFPNDKPITTIKELAYALTSHFPYEVPISS IKIRHLHCQVPSTEIFYSLNATIVGLAVSSEESESLPWCVGLEHSGEGQSFAAGVYSN SYLLVAGQGMQITLCIFKCSAYKLTG" CDS complement(join(16479862..16479915,16480597..16480724, 16481227..16481326,16481726..16481906,16482458..16482641, 16482819..16482988,16483119..16483152,16483274..16483371, 16483834..16484021)) /locus_tag="TCM_044402" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pre-mRNA cleavage complex II protein family isoform 1" /protein_id="EOY19330.1" /db_xref="Phytozome:GSVIVT01008098001" /db_xref="TAIR:AT5G11010.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I335" /translation="MDSKLESGSSTANIYIPEEWSEAADSIAYDSVTSPPPIAFICGA KNSGKTTFSRLLLNILLQRYQKVAYLDADVGQPEFTAPGFLSLTVVDKLTADLAIPCL KTPERCFFFGDISSKRDPSAYLKYAFTLYDYYRKEYCTFDESELAGRTELPLVVNTPG WVKGIGYEILVDMLKYISPTHVVKINISVGSKNLPGGAFWLDGDSDGMVNIIEIKSAC QDSLNRSVLVQKDARLLRDLRIMAYFRQIFPNDKPITTIKELAYALTSHFPYEVPISS IKIRHLHCQVPSTEIFYSLNATIVGLAVSSEESESLPWCVGLGIVRGIDMFKGLLYMI TPVPQSTLEKVNLLLQGYIQIPTCLLQVKGCRSPYVSSNVLPTS" mRNA complement(join(16480420..16480724,16481726..16481906, 16482458..16482641,16482819..16482988,16483119..16483152, 16483274..16483371,16483834..16484429)) /locus_tag="TCM_044402" /product="Pre-mRNA cleavage complex II family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008098001" /inference="similar to AA sequence:Phytozome:GSVIVT01008098001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7928t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4719t1" mRNA complement(join(16480696..16481326,16481726..16481906, 16482458..16482641,16482819..16482988,16483119..16483152, 16483274..16483371,16483834..16484429)) /locus_tag="TCM_044402" /product="Pre-mRNA cleavage complex II family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008098001" /inference="similar to AA sequence:Phytozome:GSVIVT01008098001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8248t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4719t1" CDS complement(join(16480716..16480724,16481726..16481906, 16482458..16482641,16482819..16482988,16483119..16483152, 16483274..16483371,16483834..16484021)) /locus_tag="TCM_044402" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Pre-mRNA cleavage complex II family protein isoform 4" /protein_id="EOY19333.1" /db_xref="Phytozome:GSVIVT01008098001" /db_xref="TAIR:AT5G11010.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R907" /translation="MDSKLESGSSTANIYIPEEWSEAADSIAYDSVTSPPPIAFICGA KNSGKTTFSRLLLNILLQRYQKVAYLDADVGQPEFTAPGFLSLTVVDKLTADLAIPCL KTPERCFFFGDISSKRDPSAYLKYAFTLYDYYRKEYCTFDESELAGRTELPLVVNTPG WVKGIGYEILVDMLKYISPTHVVKINISVGSKNLPGGAFWLDGDSDGMVNIIEIKSAC QDSLNRSVLVQKDARLLRDLRIMAYFRQIFPNDKPITTIKELAYALTSHFPYEVPISS IKIRHLHCQEL" CDS complement(join(16481198..16481326,16481726..16481906, 16482458..16482641,16482819..16482988,16483119..16483152, 16483274..16483371,16483834..16484021)) /locus_tag="TCM_044402" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pre-mRNA cleavage complex II family protein isoform 3" /protein_id="EOY19332.1" /db_xref="Phytozome:GSVIVT01008098001" /db_xref="TAIR:AT5G11010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R907" /translation="MDSKLESGSSTANIYIPEEWSEAADSIAYDSVTSPPPIAFICGA KNSGKTTFSRLLLNILLQRYQKVAYLDADVGQPEFTAPGFLSLTVVDKLTADLAIPCL KTPERCFFFGDISSKRDPSAYLKYAFTLYDYYRKEYCTFDESELAGRTELPLVVNTPG WVKGIGYEILVDMLKYISPTHVVKINISVGSKNLPGGAFWLDGDSDGMVNIIEIKSAC QDSLNRSVLVQKDARLLRDLRIMAYFRQIFPNDKPITTIKELAYALTSHFPYEVPISS IKIRHLHCQVPSTEIFYSLNATIVGLAVSSEESESLPWCVGLGRFGLHCLS" mobile_element complement(16485069..16485241) /note="source:scaffold_4_CACTA_0503 6771 6930" /mobile_element_type="transposon:TIR/CACTA" gene complement(16485701..16486345) /locus_tag="TCM_044403" /note="dbxref CacaoGD:Thecc1EG044403" mRNA complement(16485701..16486345) /locus_tag="TCM_044403" /product="SAUR family protein, putative" /inference="similar to AA sequence:Phytozome:POPTR_0010s23320.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage" CDS complement(16486004..16486309) /locus_tag="TCM_044403" /codon_start=1 /product="SAUR family protein, putative" /protein_id="EOY19334.1" /db_xref="Phytozome:POPTR_0010s23320.1" /translation="MSMAKLRASGMKIVAEKLQVCGDRSGSSVKGVKGGHFAVFAVEN DKTKRFIVPLSYLNHPGFLVLLEQAAEEFGFVQKGALRVPCQWSEMERLLAGNARRI" mobile_element complement(16486926..16486964) /note="source:scaffold_5_CACTA_0610 5709 5747" /mobile_element_type="transposon:TIR/CACTA" gene 16494722..16499492 /locus_tag="TCM_044404" /note="dbxref CacaoGD:Thecc1EG044404" mRNA join(16494722..16495170,16495307..16499492) /locus_tag="TCM_044404" /product="Ataxia-telangiectasia mutated, putative" /inference="similar to AA sequence:ricco:30147.m013943" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4732t1" CDS 16495327..16498557 /locus_tag="TCM_044404" /note="dbxref ricco:30147.m013943" /codon_start=1 /product="Ataxia-telangiectasia mutated, putative" /protein_id="EOY19335.1" /db_xref="TAIR:AT3G48190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GSM8" /translation="MEDPKTPETLEAKNPDLELLEEASEATDLLTFSESRNGLGSILD VQHQENGNAVGGNSLALDRKENGVSVFETEEGCLVDDGVDGKKEDQMGVVVAESTERL QERVDGGSQTNVFIETVRDEGTKEDDGSGINGVDSVKRIQISGDNISLYVDFSGPLNE VNGTGLMGKNEEFREAGNEELIIDGQEHKFYVGDIVWVRTKSQTWWPGKIFDPSDAQE YALKGDQRHCLLVGYFGSSHVAWCCPSQLKPFHVNFEQMTGQNKARSFLGAVEKAVDD FGKRLKLEMTCSCVLKEKKFSVSNSAIKAGASMPECKVGALGEFSAAQFEPAKFLCQL KNLAYVVSKPGMLEFTIIQNCLSAFYCSIGHCQLPMHQLWRMTYDAENASRRPMDGRD ATAGLAGENSISYKLLLEQSDVTKNQMSQLDQNADLAKISGENWGDIVAGEGVILSKL ASTSRKRKGKNYSEVRTSSIQIEGPHQGMCVSSVENGNDMTDLKNEKAFDLRERKKSK YLSYPYVNWESKGLTETEDPNTLNVSHEGVNEFIGSPSVVKSSVKRFQKNWYRKFIRG NNVTPYPELMNTPSAELLSELHFIAVDCLFSTESKNFGLIEWFFSRFRISVYHDESIY EMYCRNMVGQKEATATEPFLSGNDSHDMKPTSSPCMYPGNKMQKGKKLTNSGRSKIKS LSGLSDVNINFATCNLSVKEFQAMASEAPNGKQTLAGQQTKQATDIPDLNGSGAMPIP LAEDSQIMSHIASEPRKRKRKRAASEHLKTRANGNTASSSSLLLDLQVTGPYSIKTIP EQSNREGLNVGLPDSSGKNAHARPDMGALAAEIKPCQKKRGRKPKAPSGHPNPMLAAG IPDLNGTSNEPNILGKDFQEANNVLSVVKPVRKRRRRKGEATLSSKNIIINYDRAEAN GKPLGTTLLLTFTPGASMPSKEALVATFCRFGPLKESEILIMKDSNSAQVVFMRSEDA GNAVKSFEKSNPFGATLMNYHLQNDSILNSQPMEVLRTPAKPSGLTPHLGDAPPIDFI RQNLEMMTSMLERSGDNLSPEMKAKLESEIKGLLKKVSSLPNSSSS" gene <16500035..>16517921 /locus_tag="TCM_044405" /note="dbxref CacaoGD:Thecc1EG044405" mRNA join(<16500035..16500057,16500244..16500373, 16500466..16500635,16501103..16501497,16501576..16502076, 16517796..>16517921) /locus_tag="TCM_044405" /product="Ubiquitin-specific protease 12 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29755.m000431" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044409t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01330.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc421t5; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc421t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4736t1" CDS join(<16500036..16500057,16500244..16500373, 16500466..16500635,16501103..16501497,16501576..16502076, 16517796..>16517921) /locus_tag="TCM_044405" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG044409t1" /codon_start=1 /product="Ubiquitin-specific protease 12 isoform 2" /protein_id="EOY19337.1" /db_xref="Phytozome:POPTR_0008s01330.1" /db_xref="TAIR:AT5G06600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9P5" /translation="ADHLITEVDSSESQSVGSQQVRKCTWRIENFSCIKYKKLYSDIF HVGGNKWRLLVFPKGNPQWNRVDHISFYVDVADAATLPYGWSRYAQLRLTVVNQIDRK YSITKVTDHEFNANENDWGFTSFMPLDELLDPKRGYLVNDACLVEAYIATDRTIDLLS DALIVELETASDKLKSKEADHGKAAIDNQKTAIAEPEEITTRSSAILSAPAVLSSPGQ DKAESTNQNLPPADQTSSQSETIEPEDPTEEDMDTFFTSLESELASGNMVSSQEEAKE ALVNIDEALNMAPANFYDSVMISSLKKAFKVLSCFDCSSTFTIEQKNELLAMEENFKQ LPERVVKAVQDKNLLTEKESVKLALTRNLEDSLDKFKEAKAEVKQAEQKLASLHEQVV EAQKNKENILAERKENFKISQDLKVQLNALGKEWPEYVAKAKVAEEEEKSVEAEWG" mRNA join(16500042..16500167,16500244..16500373, 16500466..16500635,16501103..16501497,16501576..16502503) /locus_tag="TCM_044405" /product="Ubiquitin-specific protease 12 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29755.m000431" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044409t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01330.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4736t1" CDS join(16500092..16500167,16500244..16500373, 16500466..16500635,16501103..16501497,16501576..16502244) /locus_tag="TCM_044405" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044409t1" /codon_start=1 /product="Ubiquitin-specific protease 12 isoform 1" /protein_id="EOY19336.1" /db_xref="Phytozome:POPTR_0008s01330.1" /db_xref="TAIR:AT5G06600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9P5" /translation="MHKERMSMNKQRRVKDWIEHGLELEVDSSESQSVGSQQVRKCTW RIENFSCIKYKKLYSDIFHVGGNKWRLLVFPKGNPQWNRVDHISFYVDVADAATLPYG WSRYAQLRLTVVNQIDRKYSITKVTDHEFNANENDWGFTSFMPLDELLDPKRGYLVND ACLVEAYIATDRTIDLLSDALIVELETASDKLKSKEADHGKAAIDNQKTAIAEPEEIT TRSSAILSAPAVLSSPGQDKAESTNQNLPPADQTSSQSETIEPEDPTEEDMDTFFTSL ESELASGNMVSSQEEAKEALVNIDEALNMAPANFYDSVMISSLKKAFKVLSCFDCSST FTIEQKNELLAMEENFKQLPERVVKAVQDKNLLTEKESVKLALTRNLEDSLDKFKEAK AEVKQAEQKLASLHEQVVEAQKNKENILAERKEIFKISQDLKAQRDAMGKEWPEYAAK AKVAEEEEKSVEAEWGRMKDFISSLKGKI" mobile_element 16502646..16506754 /note="source:CACAO_M_E12058_F3_scaffold_2 1725 5820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16506751..16506994) /note="source:CACAO_M_S_E15974_F3_scaffold_2 2823 3065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16506983..16508464) /note="source:INTACT319_F3_scaffold_1-int 926 2406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16508464..16509214 /note="source:CACAO_M_S_E64889_F3_scaffold_5 490 1240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16509236..16510533 /note="source:scaffold_10_CACTA_0134 3188 4470" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16510201..16511358 /note="source:INTACT160_F4_scaffold_7-int 13776 14933" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16511356..16511719) /note="source:CACAO_M_S_E32860_F3_scaffold_4 176 540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16511719..16513258) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18948 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16512192..16513820 /locus_tag="TCM_044408" /note="dbxref CacaoGD:Thecc1EG044408" mRNA join(16512192..16512317,16512792..16512826, 16513014..16513083,16513459..16513820) /locus_tag="TCM_044408" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044407t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.15 coverage" gene 16512792..16518424 /locus_tag="TCM_044409" /note="dbxref CacaoGD:Thecc1EG044409" mRNA join(16512792..16512826,16513014..16513069, 16516024..16516153,16516226..16516383,16516822..16517216, 16517295..16518217) /locus_tag="TCM_044409" /product="Ubiquitin-specific protease 12 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29755.m000431.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044405t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034603001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4747t1; inference alignment:Newbler:10:TSA:cgbaB_g01255t00001" CDS 16513469..16513711 /locus_tag="TCM_044408" /note="paralog of Thecc1EG044407t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19338.1" /translation="MITTTMRVRCENAHGDDGEVRCGSAHDDIALCGVGVHMMTLVMC GVGVYMSWVEPVVVYVLRHTIKRLGKGYVIALNVEN" mobile_element 16514671..16514852 /note="source:CACAO_M_S_E144751_F3_scaffold_10 1507 1687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16515343..16515433) /note="source:CACAO_Mutator_E592_scaffold_3 3636 3721" /mobile_element_type="transposon:TIR/Mutator" mRNA join(16515561..16515947,16516024..16516153, 16516226..16516383,16516822..16517216,16517295..16518424) /locus_tag="TCM_044409" /product="Ubiquitin-specific protease 12 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29755.m000431.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044405t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034603001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01255t00001" CDS join(16515941..16515947,16516024..16516153, 16516226..16516383,16516822..16517216,16517295..16517963) /locus_tag="TCM_044409" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044405t1" /codon_start=1 /product="Ubiquitin-specific protease 12 isoform 1" /protein_id="EOY19339.1" /db_xref="Phytozome:GSVIVT01034603001" /db_xref="TAIR:AT5G06600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9P5" /translation="MEVDRSESQSMGSQQVRKFTWRIENFSCIKCNKLYSDIFHVGGN KWRLLVFPKGNKVDHISIYVDAADSATLPPGWSRYAQFRLSVINQTDPKTSITKVTNH EFNAKENDWGFTSFMPLDELLDPKRGYLVNDACLVEAYIATDRTIDLLSDALIVELET ASDKLKSKEADHGEAAIDNQKPTIVKPEEITTQSSAILSAPAVLSSPGQDEAESTNQK LPTADQSSSQSETIEPEDPTEEDMDTFFTSLESELARSNIVSSQEEAKEALVNIDEAL NMAPANFYDSGMISSLKKAFKVLSSFDCSSTFTIEQKDELLAMEENFKQLPERVVKAV QDKNLLSEKESVKLALTRNLEDSLIKFKEAKAEVKQVEQKLAALHEQVAEAQKNKENI LAERKENFKISQDLKVQLNALGKEWPEYVAKAKVAEEEEKSVEAEWGRMKGFISSLKG KI" CDS join(16516047..16516153,16516226..16516383, 16516822..16517216,16517295..16517963) /locus_tag="TCM_044409" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG044405t1" /codon_start=1 /product="Ubiquitin-specific protease 12 isoform 2" /protein_id="EOY19340.1" /db_xref="Phytozome:GSVIVT01034603001" /db_xref="TAIR:AT5G06600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9P5" /translation="MGSQQVRKFTWRIENFSCIKCNKLYSDIFHVGGNKWRLLVFPKG NKVDHISIYVDAADSATLPPGWSRYAQFRLSVINQTDPKTSITKVTNHEFNAKENDWG FTSFMPLDELLDPKRGYLVNDACLVEAYIATDRTIDLLSDALIVELETASDKLKSKEA DHGEAAIDNQKPTIVKPEEITTQSSAILSAPAVLSSPGQDEAESTNQKLPTADQSSSQ SETIEPEDPTEEDMDTFFTSLESELARSNIVSSQEEAKEALVNIDEALNMAPANFYDS GMISSLKKAFKVLSSFDCSSTFTIEQKDELLAMEENFKQLPERVVKAVQDKNLLSEKE SVKLALTRNLEDSLIKFKEAKAEVKQVEQKLAALHEQVAEAQKNKENILAERKENFKI SQDLKVQLNALGKEWPEYVAKAKVAEEEEKSVEAEWGRMKGFISSLKGKI" gene complement(16519118..16525946) /locus_tag="TCM_044410" /note="dbxref CacaoGD:Thecc1EG044410" mRNA complement(join(16519118..16519645,16521661..16521858, 16521967..16522525,16523836..16523919,16525594..16525946)) /locus_tag="TCM_044410" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029306t1" /inference="similar to AA sequence:frave:gene20290" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS complement(join(16519500..16519645,16521661..16521858, 16521967..16522525,16523836..16523919,16525594..16525911)) /locus_tag="TCM_044410" /note="dbxref frave:gene20290; paralog of Thecc1EG029306t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY19341.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BCQ9" /translation="MAVELETLEDNGTWGIVPLPTNSSSIGSKWIYKVKMKADGTIER FKARLVVKSYSQVEGFDYQETFSPVARQSTVRVFLALATTKGWCLTQLDINNVFLNGD LDEEVVSPPIKARKLHPRTSRQSASKVCILDINTIFDNGCSQWNKETNSKALRGFGLT FRAMSVYWDTATIVTGSRGVPGRDTSSPQLANNVKEYLSSHFKLKDLGEVEHFLGLEV ARSVKGFSICQRKYVLDMLDEHGFLGAKPVSTPIDYNHKLEKATDEEQLNNVPVYHQL IGKLLYLTFTRPKISYAIQTLSQFMDKPGHIHLMATYRVLKYLKGFYVFIGEPLVSWK SKKQSVVAKSFAEAEYRSMAAACCEVMWLKSLLSDFGIEHSTSIKLYTDSQSAKGVDA GEYARQLMANAIIAVYEEHKLKGNVDLGKSLAYSPYQLGNSD" mobile_element complement(16522375..16525342) /note="source:CACAO_M_E71598_F33_scaffold_10 1 5037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16525958..16526309 /note="source:CACAO_M_E47430_F82_scaffold_6 1 350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16528086..16529419) /note="source:CACAO_M_E69751_F323_scaffold_9 1 1344" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16534116..16535854 /locus_tag="TCM_044412" /note="dbxref CacaoGD:Thecc1EG044412" mRNA join(16534116..16534202,16534384..16534507, 16534586..16534734,16535607..16535854) /locus_tag="TCM_044412" /product="Ubiquitin-specific protease 13, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044465t3" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400005419" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4666t2" CDS join(16534196..16534202,16534384..16534507, 16534586..16534734,16535607..16535761) /locus_tag="TCM_044412" /note="paralog of Thecc1EG044465t3" /codon_start=1 /product="Ubiquitin-specific protease 13, putative" /protein_id="EOY19342.1" /db_xref="Phytozome:PGSC0003DMP400005419" /db_xref="TAIR:AT3G11910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9P5" /translation="MEGNTGSANDEPQSLLFTWKAENFSRLEAKKMYSETVDLGGYKW RLLVFPNKDHLSIFLDVAASENLPDNWSVCPLFTLTVVNQIDKRYSVNKDTYHEFNER DHDWGFNCFMPLTELYNPRTGYLVDDTCIIQVEISIGSLFAD" gene complement(16536229..16548697) /locus_tag="TCM_044413" /note="dbxref CacaoGD:Thecc1EG044413" mRNA complement(join(16536229..16536251,16547566..16548042, 16548130..16548697)) /locus_tag="TCM_044413" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006990t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" gene complement(16538565..16539666) /locus_tag="TCM_044414" /note="dbxref CacaoGD:Thecc1EG044414" mRNA complement(join(16538565..16538983,16539229..16539319, 16539499..16539666)) /locus_tag="TCM_044414" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033263001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006990t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(16538716..16538983,16539229..16539299)) /locus_tag="TCM_044414" /note="paralog of Thecc1EG006990t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19344.1" /translation="MANATIAVHEEHELKGSVDPRTVLGHSRSWHRWLLDSMYPTEME EILKHETKEQKGNVCPDKIASLIAGYALHNSFDRFAFSPFEKAAKKAGLNRMGGKVDD ITVVVRIVQS" CDS complement(join(16547918..16548042,16548130..16548394)) /locus_tag="TCM_044413" /note="paralog of Thecc1EG006990t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19343.1" /translation="MGTQDRVNDCINVISLDNERIFKKLYQIVPKQISDVTSKQNFDD KVISSQGVKIKFRACYLPKDNELKPLEEDVCFICYEEQTLVVADEHMLKGSVDLGKVK LTSISRLKDYRRPVFSSLCGEQWVHDV" gene complement(16548744..16565335) /locus_tag="TCM_044415" /note="dbxref CacaoGD:Thecc1EG044415" mRNA complement(join(16548744..16549624,16549738..16549794, 16550764..16551007,16551106..16551198,16552008..16552080, 16553473..16553597,16555068..16555107,16555208..16555389, 16556184..16556274,16556981..16557150,16557558..16557611, 16559066..16559273,16559379..16559500,16559605..16559793, 16560077..16560231,16561667..16561815,16561907..16561968, 16562048..16562123,16562352..16562419,16562503..16562970, 16563745..16563837,16564185..16564241,16564365..16564575, 16564930..16565335)) /locus_tag="TCM_044415" /product="Replication factor C subunit 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037357001" /inference="similar to AA sequence:Phytozome:POPTR_0001s22140.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4800t4" CDS complement(join(16549308..16549624,16549738..16549794, 16550764..16551007,16551106..16551198,16552008..16552080, 16553473..16553597,16555068..16555107,16555208..16555389, 16556184..16556274,16556981..16557150,16557558..16557611, 16559066..16559273,16559379..16559500,16559605..16559793, 16560077..16560231,16561667..16561815,16561907..16561968, 16562048..16562123,16562352..16562419,16562503..16562970, 16563745..16563837,16564185..16564187)) /locus_tag="TCM_044415" /codon_start=1 /product="Replication factor C subunit 1" /protein_id="EOY19345.1" /db_xref="Phytozome:POPTR_0001s22140.1" /db_xref="TAIR:AT5G22010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C587" /translation="MSDIRKWFMKAHDKGKGNASKPANPAPTNTDSVPGGRENSGRRK TSKYFPAGKQQPKGEQGTEELPAKRKVQNENESVEKPPPSKKPSKVGIDDDFVLPKSR NTVDVTPSKKRKSGSGRGVAQKAEDNDESDEDDAKDLESPVKSGGRGGRGGTGASVAP ASGRGRGRGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAE DLIKRHGGRITTAVSKKTNYLLCDEDIEGRKSSKAKELGIPFLTEDGLFDMIRASNCG KAHSKEESKKSAESFAASLPKKSPQKMEVKSNSSSAKISGKSLTTSVSSTKQRGQPIQ HSSLTWTEKYRPKVPNEMTGNQSLVNQLHNWLAHWNEQFLGTGSKGKGKKQNDPGAKK AVLLSGTPGIGKTTSAKLVSQMLGFQTIEVNASDSRGKADAKISKGIGGSNANSIKEL VSNEALSVNMDRSKHVKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRY SQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVANAEGLQVNEIALQELAERVNGDMRMA LNQLQYMSLSMSVIKYDDIRQRLLSGSKDEDISPFTAVDKLFGIYGGKLRMDQRIDLS MSDPDLVPLLIQENYINYRPSSIGKDDSGMKRMNLIAQAAESIGDGDIINVQIRRYRQ WQLSQAGSLSSCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMSKNYRLLEDLHV HILASRESSSGRETLRLDYLTVLLTQLTNPLRDKPKDEAVKQVVEFMNAYSISQEDFD TVVELSKFQGQSNPLEGIPAAVKAALTKAYNEGSKTQMVRAADLVTLPGMKKAPKKRI AAILEPSDDVLGEENGDTLPESEEKSSDTEDLEGTTDGETLRAELQSLNSKGIEVQME LKGTGNSSAKKAPAGRGRGGKGASGSAEKKGGRGSGAGAKRKXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXIYIYIYIYIYIYIYMCMYTFHQ" mobile_element complement(16549320..16549378) /note="source:scaffold_3_CACTA_0382 1861 1920" /mobile_element_type="transposon:TIR/CACTA" misc_feature complement(join(16557558..16557611,16558370..16559091)) /locus_tag="TCM_044415" /note="Gene fragment of Thecc1EG044415t1; dbxref gnl|CacaoGD|Thecc1EG044415t1; quality class is mediumpartial-partof is thecc1eg044415t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10132t1; dbxref CacaoGD:Thecc1EG044416t1" mobile_element 16565417..16568261 /note="source:scaffold_2_CACTA_0239 5012 7860" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16568267..16568345 /note="source:scaffold_2_CACTA_0239 7781 7861" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16568350..16568425 /note="source:scaffold_2_CACTA_0239 7781 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16568554..16568629 /note="source:scaffold_2_CACTA_0239 7781 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16568639..16568714 /note="source:scaffold_2_CACTA_0239 7781 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16568941..16568997 /note="source:scaffold_2_CACTA_0239 8778 8835" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16569020..16569152 /note="source:scaffold_2_CACTA_0239 8821 8933" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16569944..16580685) /note="source:INTACT790_F336_scaffold_10-int 1 10742" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16583356..16590444 /locus_tag="TCM_044419" /note="dbxref CacaoGD:Thecc1EG044419" mRNA join(16583356..16583468,16586729..16587468, 16587720..16589414,16589512..16589548,16589671..16590080, 16590239..16590444) /locus_tag="TCM_044419" /product="NB-ARC domain-containing disease resistance-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045137t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s26900.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS join(16586808..16587468,16587720..16589414, 16589512..16589513) /locus_tag="TCM_044419" /note="paralog of Thecc1EG045137t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance-like protein" /protein_id="EOY19346.1" /db_xref="Phytozome:POPTR_0001s26900.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVE6" /translation="MIDCHKSKRIEERQQPISVEIETHVSGRDKDKEVLLELLLKSDD EGNFVIPIIGMAGIGKTTLAQLVYNDTCVQNHFDLKAWVCVSDDFDITRITKAILQSV SFEPSNDNNMTSLEEKLKKNLSEKKFLTVLDDVWNENYHNWTILQSPFLTRIPGSKVV VTTRNLDVSATMGASHAHSLKVLSEDDCLSVFAQHALGSTNFGGHPNLEKVAKKIVRK CNEGFLQEARDKQHIKDLGHKYFRDLLSRSLLQISNKDNSRFVMHDLINDLAQSVAGE ICFRIEGDKKISKQARHLSYIGSKYDAIKKFKGICEAKHCRTFLPLRLSNNRCCYVTN NVLTYLLPDLRCLRVLSLRGYQITMLPDFIKDLKHLWYLDFSETFIKSLPESVSTFYN LETLLLMGCEKLEKLPTEMEHLVNLCHLNIICAHRLEGMPSNFGTLTDLQTLSNFVVG KGEGYQIRELKNSSNLKGQLCISGLKNVTETQDAWKVKLQDKAGLDELELEWSGDFDN RTEEVEKKVLDLLQPSKKLKKLAIKNYCGATLAKWVGDSSFNNLLSFCLKDCPNCMSL PSIGKLPLLKEVRIKGLDSVSDVGVEFFGENKPNAFPSLEILQFEDMPKWEKWSFCEV DEEARRFPRLRELRITNCPQLLGTMPKCLPSLEMLVIHVCEKLVISVSSLPMLSVLEI EGCDKVLYKGFADQTSLKRVSFSKLSKFICVAEWLVLGSVRVKSLELCSLRENNWGLL TQSMSLCNMTIQNWPQLFSIGADEEREQLMQLKIPCRVEQMKIWK" gene 16590072..16594822 /locus_tag="TCM_044420" /note="dbxref CacaoGD:Thecc1EG044420" mRNA join(16590072..16590549,16593005..16593084, 16593612..16594822) /locus_tag="TCM_044420" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS join(16590191..16590549,16593005..16593084, 16593612..16593850) /locus_tag="TCM_044420" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19347.1" /translation="MLPGSLTSLDIFDFPKLEILPSNGFQNLTSLETLCVGSCPNLRS LPEKDMLSSLLRLEIWGCEVLKEQCKKDKGPEWSNIEHIPYVQIHGSISMILDGPDSG DGSGSDDYDSKEKDQSFRLTRIICHVEICVVAVFPANLILSFLDGISDTAVATIKTNT QAFALPFCPKSSYLLELYFVVNPCRSSKLSITHVLLKTFRWFFILMNGLDTFSETEYI SIVASIL" mobile_element complement(16590676..16591051) /note="source:CACAO_on_E18_scaffold_1 717 1109" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(16595588..16597982) /locus_tag="TCM_044421" /note="dbxref CacaoGD:Thecc1EG044421" mRNA complement(join(16595588..16595984,16596716..16597982)) /locus_tag="TCM_044421" /product="Ubiquitin, putative" /inference="alignment:exonerate- protein:2:TAIR:AT4G03370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030159t1" /inference="similar to AA sequence:ricco:29842.m003648" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(16596796..16597887) /locus_tag="TCM_044421" /note="dbxref ricco:29842.m003648; paralog of Thecc1EG030159t1" /codon_start=1 /product="Ubiquitin, putative" /protein_id="EOY19348.1" /db_xref="TAIR:AT4G05230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXR6" /translation="MDIIFETPEGRAFSIEIGFFDTVLEIKEKVQKYQGIPVARQILV FNGQVLEDERDVEYCVLFQDCRVQLLIADEPQVMEINEQESSPSKKIQVKVKRPSSDD YVPLEIDEDDTILQLKEKIHEMEPIPTVVNRFVLKSNGEELQDHQSLRDCGFTDDTEI NVFVKPTAIRSGRVEINEEESSPSKKIQLKIKIPSSRASVPLEMDVDDTVLRLKEKIH EMEPIPVNRLVLLSNREELQDHRSLRDCELTDNAEIDVFIKPTAIRSGAGSSKRAKKG TKRLKVMVLPWRGTVKIPVEVNPSDNVKELRKELEKLQQRSQINLPVEGYFFIHKQSI LDDDKSFRWQDVANGDTIEIFRGRVTNGS" gene 16598600..16604214 /locus_tag="TCM_044422" /note="dbxref CacaoGD:Thecc1EG044422" mRNA join(16598600..16598961,16599069..16599167, 16599958..16601042,16601116..16601374,16603171..16604214) /locus_tag="TCM_044422" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29826.m000744" /inference="similar to AA sequence:ricco:29826.m000744" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05326t00001" CDS join(16598943..16598961,16599069..16599167, 16599958..16601042,16601116..16601374,16603171..16603367) /locus_tag="TCM_044422" /note="dbxref ricco:29826.m000744" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY19349.1" /db_xref="TAIR:AT3G21060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJC6" /translation="MNAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD GSCVIWDFETRGIAKELRDRDCTAAITSVCWSKYGHRILVSAADKSLTLWDVVSGEKV TRIVLQQTPLQARLHPGSSIPSVCLACPLSSAPMIVDLSTGSTTALPVIVPDMGNGVT PPSRNKNSDTTPFTLTAACFNKNGDLVYVGNSKGEILIIDHNNVKVLAIIPISGGAVI KNIVFSRNGQYLLTNSNDRIIRIYENLLPLKDGLKALDDLNETIEEEDTVEKMKAVGS KCLVLFREFQDLITKMHWKAPCFSGDGEWVIAASASKGEHKIYIWDRVGHLVKILEGP KEAVFDLAWHPVHPIIVSVSLTGLVYIWAKDYTENWSAFAPDFKELEENEEYVEQEDE FDLVPETEKVKESDVNEDDEVDIVTVDKDPFSDSDMSQEELCFLPAIPCPDVPEQQDK CVGSSSKLIDSNHSGSPLSEENGQNGQAANNASSPLEEDTGGTRLKRKRKPSEKGLEL QAEKVRKPLKPLKSSGRLSKTKNKSVVDQDYGNGVYADDGSDDY" gene complement(16604044..16623616) /locus_tag="TCM_044423" /note="dbxref CacaoGD:Thecc1EG044423" mRNA complement(join(16604044..16604422,16610842..16611301, 16611770..16612095,16612257..16612369,16612432..16612593, 16623369..16623616)) /locus_tag="TCM_044423" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g10880.1" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" CDS complement(join(16604142..16604422,16610842..16611301, 16611770..16612095,16612257..16612369,16612432..16612541)) /locus_tag="TCM_044423" /note="weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19350.1" /db_xref="TAIR:AT4G23160.1" /translation="MLKTVGKLNPLVRKCGFVGYAPTHKGYKCYDPRSKKMETYIGDS KCFDIFQPKNAIQSINTTFDGLIFFINTKPKLKPQTNQNSTENPSNLNTLANSKLAHF EFSMSDLDIPIANCKGIRTCTKYPIANFVSYKNMSPTFFMFTSQLSCVEIPKIVQNTL KVSKWKMAILKEMRALEKNKTYEIAILIMYVDDIILIGDDTIEIERLQQYLASEFKIK DSRSQKYFLGMEVARSKKGIAVSQMKYVIDLLKETSMSGCRPAETPVDPNQKLGDSKG NLMNTLQYQKLVRKLIYLSYTWPDIAFEISLVSQFMHSPHEEHLEAVYRILRYLKSSP RKDIPFHKSNVLVKNDSHFIKEKIEGGAICNPFVPTSQQIADILTKGLLIPNYEFLIN KLGMIDIYVQLEGKCWIVRRISLTGYQSQGKELVLDF" mobile_element 16605675..16606817 /note="source:INTACT117_F146_scaffold_2-int 1 1149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16606914..16607552 /note="source:INTACT726_F314_scaffold_5-int 12650 13272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16607636..16607806 /note="source:INTACT117_F146_scaffold_2-int 1905 2081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16609502..16609805 /note="source:scaffold_2_CACTA_0276 15442 15731" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16609821..16610385 /note="source:INTACT726_F314_scaffold_5-int 13411 13899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16618239..16618641) /note="source:CACAO_M_S_E17277_F85_scaffold_3 5760 6160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16620155..16621763 /note="source:CACAO_M_E71351_F72_scaffold_10 1 1609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16621749..16623632) /note="source:CACAO_M_S_E89975_F72_scaffold_8 1 1888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16621764..16622105) /note="source:scaffold_4_CACTA_0500 8920 10870" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16625327..16626167) /note="source:INTACT464_F222_scaffold_9-int 13552 14423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16627308..16627903 /note="source:INTACT89_F140_scaffold_9-int 1212 1819" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16628019..16637955 /note="source:INTACT89_F140_scaffold_9-int 1852 11508" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16635956..16639840) /note="source:INTACT464_F222_scaffold_9-int 1273 5146" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16637969..16640522 /note="source:INTACT89_F140_scaffold_9-int 13440 15993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16640705..16641243 /note="source:INTACT89_F140_scaffold_9-int 1862 2358" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16641150..16643035) /locus_tag="TCM_044426" /note="dbxref CacaoGD:Thecc1EG044426" mRNA complement(join(16641150..16642269,16642731..16643035)) /locus_tag="TCM_044426" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage" CDS complement(join(16641533..16642269,16642731..16642983)) /locus_tag="TCM_044426" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19351.1" /translation="MEFQVYSLQTWPKVITYITDQLLLHSLLHACLIQRQEWKSKTIA MRPTTVGVSTGAGPQPPQNFKPKSEWKHEEAASFLFVYLPGFVADQLTIKPDYSNRTV KVQGERRLPNNKVLPVNETFSIPEDCILAKMEKQFGRGILLFKIPRDVIPQLTPRKPQ ETVGGRVTREDEDTTGPSKQTSTTGLEKQRPDKAAAIVPLVTTATDEGAVSTKAIDEN KAKTGSTSDEQKLVEKKEENEEESYKEQSRESAMSSATVADKVEMKEKEKSQKSSDAK GKEKETVKANLVLEKKGMVEELNEDRSLLVNMGAAILIIAALVVSLFYTLIRS" gene 16644341..16650936 /locus_tag="TCM_044427" /note="dbxref CacaoGD:Thecc1EG044427" mRNA join(16644341..16644840,16644996..16645209, 16645707..16645911,16646219..16646309,16646441..16646586, 16647285..16647528,16647827..16647931,16648071..16648253, 16648492..16648696,16648873..16649365,16649957..16650036, 16650150..16650936) /locus_tag="TCM_044427" /product="Glycosyl hydrolase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29852.m002020" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025896t1" /inference="similar to AA sequence:ricco:29852.m002020" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4788t1" mRNA join(16644522..16644840,16644996..16645209, 16645707..16645911,16646219..16646309,16646441..16646586, 16647285..16647528,16647827..16647931,16648071..16648253, 16648492..16648696,16648873..16649365,16649957..16650036, 16650153..16650666) /locus_tag="TCM_044427" /product="Glycosyl hydrolase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29852.m002020" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025896t1" /inference="similar to AA sequence:ricco:29852.m002020" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc47t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4788t1; inference alignment:Newbler:10:TSA:cgbaL_g00679t00001" CDS join(16644996..16645209,16645707..16645911, 16646219..16646309,16646441..16646586,16647285..16647528, 16647827..16647931,16648071..16648253,16648492..16648696, 16648873..16649365,16649957..16650036,16650150..16650172) /locus_tag="TCM_044427" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29852.m002020; paralog of Thecc1EG025896t1" /codon_start=1 /product="Glycosyl hydrolase family protein isoform 1" /protein_id="EOY19352.1" /db_xref="TAIR:AT5G04885.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WNW0" /translation="MGRGLLKLVVGVLWLGMVVGAEYVKYKDPNQPVAARIKDLMSKM TLAEKIGQMVQIDRTVATEQILRDYSIGSVLSGGGSAPLPQASAEDWVNMINAYQNGS LASRLGIPMIYGIDAVHGHNNVYNATIFPHNVGLGATRDPALVKKIGAATALEVRATG IPYVFAPCIAVCRDPRWGRCYESYSEDHKIVEEMTDIIFGLQGDIPSGSRKGVPYVGG KDKVAACAKHFVGDGGTTRGINENNTVIDVHGLLSMYMPAYSYSVIKGVSTIMVSYSS WNGEKMHANHELITGFLKNTLKFKGFVISDWQGIDRITSPPHLNYTYSVQAAIQAGID MVMVPFNHTEFVDDLTYLVNSKVIPMDRIDDAVERILLVKFTMGLFENPFADFSLVHE LGSQAHRDLAREAVRKSLVLLKNGKGGTTPLLPLSKKASKILVAGTHADNLGYQCGGW TINWQGFSGNNYTRGTTILGAINSTVDPSTEIVYRENPDADFVKSNNFDYAIVAVGEP PYAETAGDSTTLTMMDPGPSVITNVCGAVKCVVVIISGRPIVIEPYVSTIDALVAAWL PGTEGQGVIDALYGDYGFSGKLPRTWFKTVDQLPMNVEDSHYDPLFPLGFGLKTDSVA SIVSRSTSAAALEGPCLFILIITISLSFYFTAGKIPIY" CDS join(16644996..16645209,16645707..16645911, 16646219..16646309,16646441..16646586,16647285..16647528, 16647827..16647931,16648071..16648253,16648492..16648696, 16648873..16649365,16649957..16650036,16650153..16650172) /locus_tag="TCM_044427" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29852.m002020; paralog of Thecc1EG025896t1" /codon_start=1 /product="Glycosyl hydrolase family protein isoform 2" /protein_id="EOY19353.1" /db_xref="TAIR:AT5G04885.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WNW0" /translation="MGRGLLKLVVGVLWLGMVVGAEYVKYKDPNQPVAARIKDLMSKM TLAEKIGQMVQIDRTVATEQILRDYSIGSVLSGGGSAPLPQASAEDWVNMINAYQNGS LASRLGIPMIYGIDAVHGHNNVYNATIFPHNVGLGATRDPALVKKIGAATALEVRATG IPYVFAPCIAVCRDPRWGRCYESYSEDHKIVEEMTDIIFGLQGDIPSGSRKGVPYVGG KDKVAACAKHFVGDGGTTRGINENNTVIDVHGLLSMYMPAYSYSVIKGVSTIMVSYSS WNGEKMHANHELITGFLKNTLKFKGFVISDWQGIDRITSPPHLNYTYSVQAAIQAGID MVMVPFNHTEFVDDLTYLVNSKVIPMDRIDDAVERILLVKFTMGLFENPFADFSLVHE LGSQAHRDLAREAVRKSLVLLKNGKGGTTPLLPLSKKASKILVAGTHADNLGYQCGGW TINWQGFSGNNYTRGTTILGAINSTVDPSTEIVYRENPDADFVKSNNFDYAIVAVGEP PYAETAGDSTTLTMMDPGPSVITNVCGAVKCVVVIISGRPIVIEPYVSTIDALVAAWL PGTEGQGVIDALYGDYGFSGKLPRTWFKTVDQLPMNVEDSHYDPLFPLGFGLKTDSVA SIVSRSTSAAALEGPCLFILIITISLSFYFTGKIPIY" mRNA join(16646286..16646328,16646441..16647528, 16647827..16647931,16648071..16648253,16648492..16648696, 16648873..16649365,16649957..16650036,16650153..16650666) /locus_tag="TCM_044427" /product="Glycosyl hydrolase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29852.m002020" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041163t3" /inference="similar to AA sequence:Phytozome:POPTR_0008s01410.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc47t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4788t1" CDS join(16647127..16647528,16647827..16647931, 16648071..16648253,16648492..16648696,16648873..16649365, 16649957..16650036,16650153..16650172) /locus_tag="TCM_044427" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041163t3" /codon_start=1 /product="Glycosyl hydrolase family protein isoform 3" /protein_id="EOY19354.1" /db_xref="Phytozome:POPTR_0008s01410.1" /db_xref="TAIR:AT5G04885.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WNW0" /translation="MNTTIYTAYIWNGITNDASILYSVSIILFVRLLNHLCFLYLFSP FTLFLNSARDKVAACAKHFVGDGGTTRGINENNTVIDVHGLLSMYMPAYSYSVIKGVS TIMVSYSSWNGEKMHANHELITGFLKNTLKFKGFVISDWQGIDRITSPPHLNYTYSVQ AAIQAGIDMVMVPFNHTEFVDDLTYLVNSKVIPMDRIDDAVERILLVKFTMGLFENPF ADFSLVHELGSQAHRDLAREAVRKSLVLLKNGKGGTTPLLPLSKKASKILVAGTHADN LGYQCGGWTINWQGFSGNNYTRGTTILGAINSTVDPSTEIVYRENPDADFVKSNNFDY AIVAVGEPPYAETAGDSTTLTMMDPGPSVITNVCGAVKCVVVIISGRPIVIEPYVSTI DALVAAWLPGTEGQGVIDALYGDYGFSGKLPRTWFKTVDQLPMNVEDSHYDPLFPLGF GLKTDSVASIVSRSTSAAALEGPCLFILIITISLSFYFTGKIPIY" gene complement(16652377..16654686) /locus_tag="TCM_044428" /note="dbxref CacaoGD:Thecc1EG044428" mRNA complement(16652377..16654686) /locus_tag="TCM_044428" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004164t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03160.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05759t00001" CDS complement(16652821..16654329) /locus_tag="TCM_044428" /note="paralog of Thecc1EG004164t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY19355.1" /db_xref="Phytozome:POPTR_0016s03160.1" /db_xref="TAIR:AT3G56630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0F8" /translation="MELIIFSIQPLLLLFLVFLFSYYYFFTSHQKPDDNKGFKIYPIL GALPDFLRNRHRFLDWTTDILSRCPTNTSVFRRPGKVHGIISANPLNVEHVLKTNFDN YPKGERFIFLLKDFLGQGIFNSDGELWKIQRKTASYEFNTKSLRNFIMDNVRVETSTR LIPVLNHASKTLQVLDLQDILEQYAFDNICQLAFNVDPGCLGGDGTSGSQFMRAFEDA ASLSSGRFMYAFPLFFKIKKIFNMGSERNLRNSIKIVHEFADDIIQKRLEAQAENQDE DLLSRFIRNDDNSPQFLRDIIISFILAGRDTTSSALTWFFWLLSVNPNVELKIRKELQ LIRQRNGKSIGDAYTFDELRDMHYLHAAISESLRLYPPVPVDTKACLRNDILPDGTFI GKDWFFTYHTYAMGRMEAIWGKNCKEYLPERWLDENGNCKQESPFRFPIFHAGPRMCL GKDMAYIQMKSIVAAVTERFVVEVPGKDKCPQHLLSLTLRMKGGLPVQIKER" mobile_element 16655855..16659293 /note="source:CACAO_M_E84368_F4_scaffold_10 8855 12334" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16659269..16659369 /note="source:INTACT136_F150_scaffold_10-int 7158 7254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16661388..16661585 /note="source:CACAO_M_E5899_F5_scaffold_2 21827 22025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16661536..16667334) /note="source:INTACT1223F_F374_scaffold_6-int 1 10325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16667335..16667725 /note="source:INTACT136_F150_scaffold_10-int 8892 9284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16668110..16668328 /note="source:CACAO_M_S_E14932_F233_scaffold_2 11619 11840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16668137..16668329 /note="source:scaffold_2_CACTA_0259 6870 7063" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16668779..16668975 /note="source:CACAO_M_E5899_F5_scaffold_2 21827 22025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16668926..16669532) /note="source:INTACT1223F_F374_scaffold_6-int 1 583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16669533..16670422 /note="source:CACAO_M_E84368_F4_scaffold_10 12327 13216" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(16671578..16678360) /locus_tag="TCM_044430" /note="dbxref CacaoGD:Thecc1EG044430" mRNA complement(join(16671578..16672096,16672164..16672290, 16672604..16672661,16673121..16673207,16673357..16673442, 16673585..16673631,16675424..16675610,16676003..16676293, 16676369..16676563,16676733..16676834,16677701..16678000, 16678104..16678277)) /locus_tag="TCM_044430" /product="Sucrose-6F-phosphate phosphohydrolase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023137t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s01390.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4703t2" CDS complement(join(16672661,16673121..16673207, 16673357..16673442,16673585..16673631,16675424..16675610, 16676003..16676293,16676369..16676563,16676733..16676834, 16677701..16678000,16678104..16678163)) /locus_tag="TCM_044430" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG023137t2" /codon_start=1 /product="Sucrose-6F-phosphate phosphohydrolase family protein isoform 1" /protein_id="EOY19356.1" /db_xref="Phytozome:POPTR_0008s01390.1" /db_xref="TAIR:AT2G35840.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5IH14" /translation="MDRLNGPARLMIVSDLDQTMVDHDDPENLSLLRFNALWEAYYRQ DSLLVFSTGRSRISYKQLRNEKPLLTPDVTIMSVGTEIAYGESMVPDYDWEQFLDHNW DRDIVNQETAKFPQLIPQSDKNQRPHKVSFFLEKAESLEVIKALSECLEKRGLDVKII YSNGTALDVLPKGAGKGQALAYLLKKFKADGRVPLNTLVCGDSGNDAELFIVPEVYGV MVSNAQEELLQWHAENVKGNPHILRSTERCASGIVQAIEKFTLGPNVSPRDIRDFRKC RVNIFSPGHEVVKFYLFYERWRCAEVEKSDQLMQSLKSSFYLLGTFVHPSGIEQPLNK CMDMMERLYGDKLGKKYRVWLDWVSAAQIDLNSWLVKFDKWESTGETRQCCLTTVLLT TKQAEEPEAFTWMHIHQTWLDGLEAKDQTTWFYSMKCRKFTCRLDKHCFVLNEVVAYN V" mRNA complement(join(16672866..16673207,16673308..16673442, 16673585..16673631,16675424..16675610,16676003..16676293, 16676369..16676563,16676733..16676834,16677701..16678360)) /locus_tag="TCM_044430" /product="Sucrose-6F-phosphate phosphohydrolase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023137t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s01390.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4703t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4703t2" CDS complement(join(16673347..16673442,16673585..16673631, 16675424..16675610,16676003..16676293,16676369..16676563, 16676733..16676834,16677701..16677835)) /locus_tag="TCM_044430" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG023137t2" /codon_start=1 /product="Sucrose-6F-phosphate phosphohydrolase family protein isoform 2" /protein_id="EOY19357.1" /db_xref="Phytozome:POPTR_0008s01390.1" /db_xref="TAIR:AT2G35840.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5IH14" /translation="MSVGTEIAYGESMVPDYDWEQFLDHNWDRDIVNQETAKFPQLIP QSDKNQRPHKVSFFLEKAESLEVIKALSECLEKRGLDVKIIYSNGTALDVLPKGAGKG QALAYLLKKFKADGRVPLNTLVCGDSGNDAELFIVPEVYGVMVSNAQEELLQWHAENV KGNPHILRSTERCASGIVQAIEKFTLGPNVSPRDIRDFRKCRVNIFSPGHEVVKFYLF YERWRCAEVEKSDQLMQSLKSSFYLLGTFVHPSGIEQPLNKCMDMMERLYGDKLGKKY RVWLDWVSAAQIDLNSWLVKFDKWESTGETRQCCLTTVLLTTKQAEEPEAFTWMHIHQ TWLDGLEAKDQTTWFF" mobile_element complement(16678730..16678820) /note="source:CACAO_on_S_E58_scaffold_2 208 319" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16678815..16679044 /note="source:CACAO_on_S_E58_scaffold_2 222 450" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(16680344..16680482) /note="source:CACAO_M_S_E1495_F60_scaffold_1 17683 17822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16680483..16683438) /note="source:CACAO_M_E71593_F143_scaffold_10 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16683439..16684436) /note="source:CACAO_M_S_E1495_F60_scaffold_1 535 1541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16684763..16685807) /note="source:CACAO_M_S_E15173_F4_scaffold_2 11832 12908" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16685800..16686282) /note="source:CACAO_M_S_E1495_F60_scaffold_1 10673 11154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16686306..16686423) /note="source:CACAO_M_S_E1495_F60_scaffold_1 7013 7130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16686411..16689046) /note="source:CACAO_M_E52239_F256_scaffold_7 19813 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16689042..16689968) /note="source:CACAO_M_S_E1495_F60_scaffold_1 6107 7023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16689969..16692900 /note="source:CACAO_M_E23109_F230_scaffold_4 1 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16692656..16699656 /locus_tag="TCM_044434" /note="dbxref CacaoGD:Thecc1EG044434" mRNA join(16692656..16692685,16699026..16699656) /locus_tag="TCM_044434" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element complement(16692901..16693898) /note="source:CACAO_M_S_E1495_F60_scaffold_1 5104 6105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16693902..16695434) /note="source:CACAO_M_E71587_F17_scaffold_10 1 1533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16695435..16697194) /note="source:CACAO_M_E49885_F60_scaffold_7 958 2717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16698277..16698363) /note="source:scaffold_1_CACTA_0028 3514 3602" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16698463..16698592) /note="source:INTACT189_F49_scaffold_5-int 17794 17914" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 16699164..16699382 /locus_tag="TCM_044434" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19358.1" /translation="MLNIEGGRHRQYTGLGTKRAIRICAWLTLMPFTALVTFIIKDRK IDCPFLHPNAILELKTQLINSVFIDKIE" mobile_element complement(16700389..16706911) /note="source:CACAO_M_E71584_F22_scaffold_10 1 6523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16707041..16710010) /note="source:CACAO_M_E71583_F44_scaffold_10 1 2970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16711041..16711898 /note="source:CACAO_M_E11098_F15_scaffold_2 6240 6959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16712798..16712856 /note="source:CACAO_M_E9978_F12_scaffold_2 4499 4557" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16712836..16712958) /note="source:INTACT694_F17_scaffold_5-int 5093 5216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16712959..16715839) /note="source:CACAO_M_S_E121973_F83_scaffold_10 1 2881" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16715850..16720865) /note="source:CACAO_M_E33018_F264_scaffold_4 102 5135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16720868..16723985) /note="source:CACAO_M_E71580_F115_scaffold_10 1 3118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16723994..16724085) /note="source:INTACT694_F17_scaffold_5-int 1 94" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16724088..16724924) /note="source:INTACT280_F60_scaffold_5-int 4394 5230" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16724925..16728807) /note="source:INTACT39F_F22_scaffold_1-int 3568 7435" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16728806..16730103 /note="source:CACAO_M_E49885_F60_scaffold_7 7515 8779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16730103..16730634 /note="source:CACAO_M_E49885_F60_scaffold_7 8000 8807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16733625..16733752 /note="source:CACAO_M_S_E52921_F60_scaffold_5 16417 16543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16733734..16735097 /note="source:CACAO_M_E49885_F60_scaffold_7 9240 10614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16736878..16737413 /note="source:CACAO_M_E33018_F264_scaffold_4 4180 4721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16738332..16739547 /note="source:CACAO_M_S_E53719_F281_scaffold_5 1443 2664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16739984..16740988 /note="source:INTACT694_F17_scaffold_5-int 4663 5656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16741943..16744481) /note="source:CACAO_M_S_E53719_F281_scaffold_5 392 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16743750..16744735 /note="source:CACAO_M_E22484_F328_scaffold_3 8906 9911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16745268..16745994 /note="source:CACAO_M_E11098_F15_scaffold_2 14700 15431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16746170..16746606 /note="source:INTACT280_F60_scaffold_5-int 13871 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16752028..16752059 /note="source:INTACT135_F42_scaffold_4-int 6335 6369" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16753190..16754402 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3541 4755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16755258..16756829 /note="source:INTACT591_F264_scaffold_1-int 19742 21264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16759684..16762418) /note="source:CACAO_M_E71568_F73_scaffold_10 1 2735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16766470..16766546) /note="source:CACAO_M_E44709_F9_scaffold_6 18667 18740" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16767376..16774331) /note="source:CACAO_M_S_E88822_F170_scaffold_7 4009 10933" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16770157..16773341) /locus_tag="TCM_044444" /note="dbxref CacaoGD:Thecc1EG044444" mRNA complement(join(16770157..16771216,16771550..16771948, 16772441..16773341)) /locus_tag="TCM_044444" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009529t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS complement(join(16771041..16771216,16771550..16771948, 16772441..16773227)) /locus_tag="TCM_044444" /note="paralog of Thecc1EG009529t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19359.1" /translation="MAPTELKELKVQLQDLVDKDFIRPSTSPWGAPILFVKKKDGTLR LCIDYHQLNRVIIKNKYPLPQIDDLFNQLRSAMVFFKIDLRYGYYQLKIKEQDVPKTT FRTRYGHYEFLVMPFVLTNAPAAFMDLMNRVFHPYLDKFVIVFIDDILVYSKNDDEHA THLHIVLQTLRERQLYAKFSKCEFWLKEVVFLGHVVSEARIYVDPKKIETILQWEQLR TVTKISSFLSFAGYYRRFVQGFSLIAAPLTRLTRKGVKFEWDDVWIQLNNGEDGTLLA SFVVRPSFLDQIRELQKSDDELKQEVQKLHDGETSEFRLSDDGTLMFRDRICVPKDDQ LRQAILEEAHSSVYALHPRSTKMYRTIKESYWWPSMKRDIAEFITKCLTCQQIKAEHK KSSDGQSERTIQTLEDMLQTCIIDFIGSWDNHLPLVEFAYNNSFQSSIGMAPYEALYG RKC" mobile_element 16775232..16775691 /note="source:CACAO_M_E49298_F73_scaffold_7 1 460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16780821..16781448 /note="source:INTACT650_F73_scaffold_8-int 2678 3304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16781551..16782169 /note="source:CACAO_M_E23493_F73_scaffold_4 3269 3887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16786967..16787453) /note="source:scaffold_4_CACTA_0498 9166 9653" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16787907..16788049 /note="source:CACAO_M_E33228_F15_scaffold_4 10469 10582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16788387..16792418) /note="source:INTACT213_F172_scaffold_10-int 1 4029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16792775..16792840 /note="source:CACAO_M_S_E5046_F335_scaffold_1 18208 18274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16796769..16796899) /note="source:CACAO_on_E565_scaffold_5 828 970" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(16798077..16800824) /note="source:CACAO_M_E71561_F79_scaffold_10 1 2748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16804592..16805325) /note="source:CACAO_M_S_E2040_F42_scaffold_1 2383 3117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16810336..16810375 /note="source:CACAO_M_E51939_F73_scaffold_7 2505 2544" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16810492..16814042) /locus_tag="TCM_044447" /note="dbxref CacaoGD:Thecc1EG044447" mRNA complement(join(16810492..16810718,16812290..16812782, 16813691..16814042)) /locus_tag="TCM_044447" /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025864t1" /inference="similar to AA sequence:Phytozome:Glyma02g08970.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06845t00001" CDS complement(join(16812312..16812782,16813691..16814005)) /locus_tag="TCM_044447" /note="paralog of Thecc1EG025864t1" /codon_start=1 /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative" /protein_id="EOY19360.1" /db_xref="Phytozome:Glyma02g08970.1" /db_xref="TAIR:AT5G16010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKI4" /translation="MLLKYLFPPSLFFTATSLLTLASMANGGLEEVRGKHVQYSKFFG VGSQASKASQITLSTRAAMVILYTPGFLNGVASFLLFPDEGFRFLLLKSAITIHFGKR VFEALLIHKYSGKMGLDTLIFILVSYLISSASMIYSQHLTQGVPEPPVDLKYPGIVLF LVGVSGNFYHHYLLSKLRGKGAKEYKIPKGGLFALVACPHYLFEVLGFWGITFISQTL YTFSFTLGSTLYLMGRSYATRRWYLSKFEDFPEGVRAMIPYIF" mobile_element 16822972..16823037 /note="source:CACAO_M_E3259_F15_scaffold_1 2941 3012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16826161..16826567 /note="source:scaffold_4_CACTA_0494 2438 2824" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16826594..16826718) /note="source:CACAO_M_E5899_F5_scaffold_2 20436 20566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16830938..16831773 /note="source:scaffold_4_CACTA_0494 16919 17730" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16831890..16833761) /note="source:scaffold_4_CACTA_0494 2169 3980" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16840146..16840788) /note="source:scaffold_9_CACTA_0931 1 646" /mobile_element_type="transposon:TIR/CACTA" gene complement(16840209..16846243) /locus_tag="TCM_044450" /note="dbxref CacaoGD:Thecc1EG044450" mRNA complement(join(16840209..16840232,16844942..16845129, 16845868..16846243)) /locus_tag="TCM_044450" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044451t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" mobile_element 16841369..16841457 /note="source:CACAO_M_E69460_F12_scaffold_9 23466 23554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16841458..16841486) /note="source:scaffold_9_CACTA_0931 3040 3060" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16843091..16843148) /note="source:CACAO_M_E59093_F12_scaffold_9 13628 13688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16843324..16844035 /note="source:CACAO_M_E58324_F9_scaffold_9 8623 9298" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(16844989..16845129,16845868..16846104)) /locus_tag="TCM_044450" /note="paralog of Thecc1EG044451t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19361.1" /translation="MAILGLLETRGIHFQYSKFFNPKSAPTRVHVPSRVGMFLLYAPA FLTGLATFWLFPHGDLGFRFLKSAITIHFFKRILEGLLEPSIDLKYPGIVFPNTNKWS FLPSVPSLQTKSKGLQRLQDPQR" gene complement(16847272..16849134) /locus_tag="TCM_044451" /note="dbxref CacaoGD:Thecc1EG044451" mRNA complement(join(16847272..16848042,16848771..16849134)) /locus_tag="TCM_044451" /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein" /inference="alignment:exonerate-protein:2:frave:gene19686" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044452t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01370.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4777t2" gene complement(16847457..16959987) /locus_tag="TCM_044452" /note="dbxref CacaoGD:Thecc1EG044452" mRNA complement(join(16847457..16847557,16958431..16958915, 16959649..16959987)) /locus_tag="TCM_044452" /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01370.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044451t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01370.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06640t00001" CDS complement(join(16847572..16848042,16848771..16849064)) /locus_tag="TCM_044451" /note="paralog of Thecc1EG044452t1" /codon_start=1 /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein" /protein_id="EOY19362.1" /db_xref="Phytozome:POPTR_0008s01370.1" /db_xref="TAIR:AT5G16010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKI5" /translation="MLLQIVFPPTLLHTAASVFTLISMAILGLLETGGIHLQYSKFSN TTRINVPSRVGMFLIYAPAFLAGLASFWLFPHGDVRFLFLKSAITIHFFKRILEVLFV HKFSGVMGLESTIVILGTYFTLSSIMIYAQQLTQGLPEPSIDLKYPGIVLFLIGISGN FYHHYLLSKLRAKGSKDYKIPRGGLFELVICPHYLFEILGFLGMSLISQTLYSFSVSL GSAMYLTCRSYVSRRWYLSKFEDFPKQVKALIPYVF" gene 16852802..16853116 /locus_tag="TCM_044453" /note="dbxref CacaoGD:Thecc1EG044453" mRNA 16852802..16853116 /locus_tag="TCM_044453" /product="Preprotein translocase Sec" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032309t1" /inference="similar to AA sequence:Phytozome:Glyma03g04010.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 16852838..16853083 /locus_tag="TCM_044453" /note="paralog of Thecc1EG032309t1" /codon_start=1 /product="Preprotein translocase Sec" /protein_id="EOY19364.1" /db_xref="Phytozome:Glyma03g04010.1" /translation="MATRIAPPRRSAVVTASMKRRRTTSSMASGGVAGTMLQFYTDDT PRLKISINVMLVMSIGFIALVAILHVMGKLYFVCREA" mobile_element complement(16854993..16858098) /note="source:CACAO_M_E71555_F15_scaffold_10 1 3106" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16857692..16958182) /locus_tag="TCM_044454" /note="dbxref CacaoGD:Thecc1EG044454" mRNA complement(join(16857692..16857706,16881520..16881612, 16882479..16882558,16905073..16905471,16905568..16905754, 16905920..16906071,16906962..16907020,16912886..16912996, 16913641..16913668,16919956..16920102,16920570..16920682, 16920824..16921146,16921366..16921781,16921979..16922854, 16923745..16924293,16924398..16924775,16927675..16927771, 16928063..16928704,16929029..16929429,16929529..16929898, 16930401..16930853,16932452..16932531,16937625..16937682, 16940209..16940294,16940439..16940562,16941669..16941701, 16941826..16941917,16944695..16945157,16945245..16945624, 16946407..16946539,16952457..16953727,16958015..16958182)) /locus_tag="TCM_044454" /product="Gag-pro-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003273t1" /inference="similar to AA sequence:Phytozome:Glyma11g23880.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.37 coverage" mobile_element complement(16858771..16862246) /note="source:CACAO_M_E589_F323_scaffold_1 1 3465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16867259..16867354 /note="source:CACAO_M_S_E64023_F13_scaffold_5 24498 24591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16869090..16869173 /note="source:INTACT1430F_F92_scaffold_9-int 7528 7611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16872455..16872694 /note="source:INTACT1430F_F92_scaffold_9-int 457 701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16875404..16875848 /note="source:INTACT1430F_F92_scaffold_9-int 697 1179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16876269..16876396) /note="source:INTACT1430F_F92_scaffold_9-int 7446 7579" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16879432..16916332) /locus_tag="TCM_044456" /note="dbxref CacaoGD:Thecc1EG044456" mRNA complement(join(16879432..16879664,16881520..16881612, 16882479..16882558,16896727..16897539,16897713..16897884, 16905236..16905471,16905568..16905754,16905920..16906071, 16906962..16907020,16907832..16907866,16916099..16916332)) /locus_tag="TCM_044456" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039268t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.20 coverage" mobile_element 16880997..16881713 /note="source:CACAO_M_S_E6875_F7_scaffold_2 3226 3944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16882054..16883105) /note="source:CACAO_M_S_E64023_F13_scaffold_5 17714 18755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16885747..16891331) /note="source:CACAO_M_S_E121934_F7_scaffold_10 11244 16828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16892089..16893166) /note="source:CACAO_M_S_E121934_F7_scaffold_10 10166 11243" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(16897286..16897539,16897713..16897884, 16905236..16905471,16905568..16905754,16905920..16905973)) /locus_tag="TCM_044456" /note="paralog of Thecc1EG039268t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19366.1" /translation="MGVSGRGNSSGIRAFDLKIIMPPQREHPPLTRSARRGKGRSQHR QLDPIEGESAVSTIRAAPAAEQIETHPHTLSPLPPTIPPVALLVPPSPPPVPPPVLDV SIPKKLKEARKHGCVSFMGELDATVAKEVVQMALRAKKLANENRRMQAELAKRRNLRV LRCAGDTYTTSRRDGSPDASHSISEGSLDSTAKSRWQPEPSCPKSADSNNINVSIRGC GRNVRGQLEKNKEKVTVASKPLRKVSGVRHFPSGCGRNAAPVSDEEYRRIQQAWIEEQ RRKSQEKEDPLMCPDQDNEEPKDV" mobile_element complement(16899091..16900056) /note="source:CACAO_M_S_E121934_F7_scaffold_10 6534 7499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16900299..16900600) /note="source:CACAO_M_S_E121934_F7_scaffold_10 6232 6533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16902543..16903312) /note="source:CACAO_M_S_E121934_F7_scaffold_10 5462 6231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16903443..16908903) /note="source:CACAO_M_S_E121934_F7_scaffold_10 1 5461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16915578..16917313 /note="source:INTACT1391F_F387_scaffold_8-int 11705 13257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16918006..16918979 /note="source:INTACT554_F250_scaffold_7-int 2387 3369" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16918270..16924761) /note="source:INTACT556_F252_scaffold_2-int 8330 14891" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(16922853..16922854,16923745..16924293, 16924398..16924775,16927675..16927771,16928063..16928704, 16929029..16929429,16929529..16929898,16930401..16930853, 16932452..16932531,16937625..16937682,16940209..16940294, 16940439..16940532)) /locus_tag="TCM_044454" /note="paralog of Thecc1EG003273t1" /codon_start=1 /product="Gag-pro-like protein" /protein_id="EOY19365.1" /db_xref="Phytozome:Glyma11g23880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0E2V7" /translation="MSRRGGSLDTSHSDSEGSLDSTARSKWHPDTDFLLNQSEEYHRE HTRKAIARGDIRLRKGREMNPKLYPRRYPTRISVRGGEQSTLVKVQRLCLEIGIRSIS TPRTNAKLQSVNNAVQHEVRRQEQTIQELRNDCCLLETAMEGYKAQYEAVRQEYFQMR ERNDSCTQSLQRKEAEMRWILRQMREVAFKARVMADKTEELRREILSKDELSERLIDH LKMLGTNMTKLVFPFGSYVMILDKDVIRYFSFIDVDFLMRPIGGTSPSDPISVPDLDD PKEQEKLKCASVESKDNLDTHQKFDLLEEILRMIEGMGMYCSMDAIELCLVLDVVIPQ KFKVLNFEKYDGTKCPITHITMYCKRMATYAHDDKLLIHCFQDSLTDMAPDRLSLQNM KKKPTESFKEYAQRWRNMASQVQPPLTKKETTVMFVNTLRAPYYERLVGSAIKNFADM VISGEMIETAIKQGKIERGDTANTKKGGTFKKREGEAQAITSGQPQGGSYNPYQPYPP YPYYPVRWYDASAHCDYHYGIEGHSIENCTTFKHKVQGLIKAGILNFEKKQEQNVNNN PLPNHTGAGVNAIEGEMNVKKNIPEVETPMEKVFEALVKACMLEVWSKRPDMNDSRDI QRPYCLYHKECVGHLIQDCCSFRKEVQRMMDESKIEFYVEASRPAVNMMAKDSTHPMK IKPLTIFYEPRGEPVEDRTQAKMTIEAPKPFPYKDDKAVSWNYNCNAHDNRRDVPIDT HYPECQPEPHKAYISVSFLSWSGFTYNVVEQLNRLPARISLLSLLLSSEPHRNSLMRI LNQACVDHDILVENLDYIIENILVGNIISFSDEEIPSRGRGNYKALHITIKCKSCTVA KVLLDNGSSLNVMPMRTLARLPIDMSFMRKIMDIAPSYNYLLGRRWIHMARAIPSSLH QKVKFIVDGKIVCVNGEEDLLISKPADTPYVEVAKEVPECSFRSFEFVNTTYVGEGTT PPIPRLSKTTKMVVSQIVRKGCRAGAGLGRELQGIRRPIRATKNEERFGLGYKPIKKE REEMIAERKRERLARFKGHELGIHGMTYPHLYETFRSGG" mobile_element 16924762..16927780 /note="source:CACAO_M_E33398_F15_scaffold_4 1 3018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16926484..16927798) /note="source:CACAO_M_S_E38315_F276_scaffold_4 4873 6192" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16927794..16927884 /note="source:CACAO_M_E58877_F5_scaffold_9 14033 14123" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16927803..16930957) /note="source:INTACT556_F252_scaffold_2-int 5054 8214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16930958..16942387) /note="source:CACAO_M_E71542_F85_scaffold_10 1683 13112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16942488..16944265) /note="source:CACAO_M_E71542_F85_scaffold_10 1 1682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16944266..16946390 /note="source:INTACT700_F304_scaffold_7-int 12833 14958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16946390..16946754) /note="source:CACAO_M_E59650_F290_scaffold_9 5060 5424" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16950703..16951661 /note="source:CACAO_M_E86338_F15_scaffold_15 4738 5697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16954975..16955351 /note="source:CACAO_M_E86338_F15_scaffold_15 10737 11113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16955352..16957083 /note="source:INTACT1391F_F387_scaffold_8-int 11706 13257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16957116..16957205) /note="source:INTACT556_F252_scaffold_2-int 1430 1512" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16958039..16958380) /note="source:INTACT556_F252_scaffold_2-int 54 377" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(16958445..16958915,16959649..16959948)) /locus_tag="TCM_044452" /note="paralog of Thecc1EG044451t1" /codon_start=1 /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein" /protein_id="EOY19363.1" /db_xref="Phytozome:POPTR_0008s01370.1" /db_xref="TAIR:AT5G16010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKI5" /translation="MTMLLQIVFPPTLLHTAASVFTLILMAILGLLETGGIHLQYSKF SNTTRMNVPSRVGMFLIYAPAFLAGLASFWLFPHGDLRFLFLKSAMTIHFFKRILEVL FVHKYSGVMGLESTIVILGTYFTLSSIMIYAQQLTQGLPEPSIDLEYPGIVLFLIGIS GNFYHHYLLSKLRANGSKDYKIPRGGLFELVICPHYLFEILGFVGMSLISQTLFSFSA SLGSAMYLTCRSYVSRRWYLSKFEDFPKQVKALIPYVF" mobile_element complement(16964969..16968314) /note="source:CACAO_M_E199_F328_scaffold_1 1 3156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16970448..16973402) /note="source:CACAO_M_E71538_F143_scaffold_10 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16978489..16982868 /locus_tag="TCM_044462" /note="dbxref CacaoGD:Thecc1EG044462" mRNA join(16978489..16978790,16982452..16982868) /locus_tag="TCM_044462" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.15 coverage" CDS join(16978713..16978790,16982452..16982613) /locus_tag="TCM_044462" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19367.1" /translation="MYILDKKYPYISPMYQYIEGKKNAKEPGRIMVSRDGGFLPPVIP SYYSWIYVLLVRIVVHPTCDSCLLCINVMFRLQGW" mobile_element 16980260..16980366 /note="source:CACAO_M_S_E38262_F319_scaffold_4 15649 15721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16985219..16985856) /note="source:CACAO_M_E50311_F328_scaffold_7 5819 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16986104..16986407) /note="source:CACAO_M_E50311_F328_scaffold_7 5573 5883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16986490..16988791) /note="source:CACAO_M_E50311_F328_scaffold_7 3291 5579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16987294..16990428 /note="source:CACAO_M_E49655_F82_scaffold_7 1760 4907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16990419..16991057) /note="source:CACAO_M_E22265_F82_scaffold_3 7332 7976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16991038..16991992 /note="source:CACAO_M_E49857_F85_scaffold_7 20072 21045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16991647..16992263) /note="source:CACAO_M_E50311_F328_scaffold_7 5826 6461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16992523..16992826) /note="source:CACAO_M_E50311_F328_scaffold_7 5573 5883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16992909..16995199) /note="source:CACAO_M_E50311_F328_scaffold_7 3291 5579" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16994827..17032144) /locus_tag="TCM_044465" /note="dbxref CacaoGD:Thecc1EG044465" mRNA complement(join(16994827..16994989,17003764..17004362, 17004642..17004838,17005420..17005506,17005594..17005668, 17005895..17006008,17006169..17006255,17006976..17007041, 17007891..17007956,17009878..17009949,17010048..17010149, 17010271..17010448,17010569..17010624,17011174..17011281, 17011471..17011539,17011631..17011739,17011815..17011903, 17013099..17013176,17014058..17014180,17016147..17016266, 17016372..17016452,17016553..17016699,17016796..17016874, 17016990..17017064,17018720..17018829,17020512..17020610, 17020955..17021070,17021156..17021264,17021392..17021610, 17021690..17021955,17024735..17024892,17024990..17025131, 17025393..17025453,17031802..17032144)) /locus_tag="TCM_044465" /product="Ubiquitin-specific protease 12 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034603001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025045t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034603001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5105t1" mobile_element 16998657..17001603 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3510 6459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17002049..17002677) /note="source:CACAO_Again_on_E205_scaffold_9 8427 9057" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(17002778..17002861) /note="source:CACAO_Again_on_E205_scaffold_9 8330 8412" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(17002856..17003213) /note="source:CACAO_Again_on_E205_scaffold_9 1 378" /mobile_element_type="transposon:TIR/hAT" mRNA complement(join(17004074..17004362,17005420..17005506, 17005594..17005668,17005895..17006008,17006169..17006255, 17006976..17007041,17007891..17007956,17009878..17009949, 17010048..17010149,17010271..17010448,17010569..17010624, 17011174..17011281,17011471..17011539,17011631..17011739, 17011815..17011903,17013099..17013176,17014058..17014180, 17016147..17016266,17016372..17016452,17016553..17016699, 17016796..17016874,17016990..17017064,17018720..17018829, 17020512..17020610,17020955..17021070,17021156..17021264, 17021392..17021610,17021690..17021955,17024735..17024892, 17024990..17025131,17025393..17025456,17025693..17025727)) /locus_tag="TCM_044465" /product="Ubiquitin-specific protease 12 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034603001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025045t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034603001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5105t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5105t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc522t13" mRNA complement(join(17004074..17004838,17005420..17005506, 17005594..17005670,17005895..17006011,17006169..17006255, 17006976..17007041,17007891..17007956,17009878..17009949, 17010048..17010149,17010271..17010448,17010569..17010624, 17011174..17011281,17011471..17011539,17011631..17011739, 17011815..17011903,17013099..17013176,17014058..17014180, 17016147..17016266,17016372..17016452,17016553..17016699, 17016796..17016874,17016990..17017064,17018720..17018829, 17020512..17020610,17020955..17021070,17021156..17021264, 17021392..17021610,17021690..17021955,17024735..17024892, 17024990..17025131,17025393..17025456,17025693..17025727)) /locus_tag="TCM_044465" /product="Ubiquitin-specific protease 12 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034603001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025045t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034603001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5105t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5105t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc522t13" CDS complement(join(17004216..17004362,17005420..17005506, 17005594..17005668,17005895..17006008,17006169..17006255, 17006976..17007041,17007891..17007956,17009878..17009949, 17010048..17010149,17010271..17010448,17010569..17010624, 17011174..17011281,17011471..17011539,17011631..17011739, 17011815..17011903,17013099..17013176,17014058..17014180, 17016147..17016266,17016372..17016452,17016553..17016699, 17016796..17016874,17016990..17017064,17018720..17018829, 17020512..17020610,17020955..17021070,17021156..17021264, 17021392..17021610,17021690..17021955,17024735..17024892, 17024990..17025131,17025393..17025456,17025693..17025722)) /locus_tag="TCM_044465" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025045t1" /codon_start=1 /product="Ubiquitin-specific protease 12 isoform 2" /protein_id="EOY19369.1" /db_xref="Phytozome:GSVIVT01034603001" /db_xref="TAIR:AT5G06600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9P5" /translation="MTLMAPPPLDQEDDEMLVPHNDFVDGPQPMEAAEAASTVDAQAV DDPPSGRFTWTIENFSRLNTKKLYSDIFFVGGYKWRILIFPKGNNVDHLSMYLDVADS ATLPYGWSRYAQFSLAVVNQIHNKYTVRKDTQHQFNSRESDWGFTSFMPLGELYDPTR GFLVNDTCIVEADVAARRVDDYWLHDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYF RKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHD VQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLD VKGCKDVYASFDKYVEVERLEGDNRYHAEQYGLQDARKGVLFIDFPPVLQLQLKRFEY DFMRDTMVKINDRYEFPLQLDLDRENGKYLSPEADRSVRNLYTLHSVLVHSGGVHGGH YYAYIRPTLSDQWFKFDDERVTKEDMKRALEEQYGGEEELPQTNPGFNNTPFKFTKYS NAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEQKRKEKAEAHLYTVIKV ARDEDLVEQIGRDIYFDLVDHEKVRSFRIQKLTPFNVFKEEVAKEFGVPVQNQRFWLW AKRQNHTYRPNRPLTLQEEAQSVGQLREVSNKANNAELKLFLEVELGQDLRPVPPPER TKEDILLFFKLYDPFKEEFRYVGRMYVRSAGKPMEILARINKMAAFGPDEEIELYEEI KFEPNVMCEHIDKKLTFRTSQLEDGDILCFQKSSEVGSEQCRYPDVPSFLEYVHNRQV VRFRSLEKPKEDEFTLELSKLHNYDDVVERVAQHLGLDDPSKIRLTSHNCYSQQPKPQ PIKYRGVEHLLDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHT IRLPKQSTVGDVLDDLKTKVELSHPNAELRLLEVFYHKIYKIFPLSDKIENINDQYWT LRAEEIPEEEKNLGPHDRLIHVYHFMKDTAQNQQVQNFGEPFFLVIHEDETLAEVKVR IQKKLQVPDEEFTKWRFAFLSLGRPEYLQDSDVVSTRFQRRDVYGAWEQYLGLEHSDN APKRSYTANQMPKEHEAPVNVVTVSGAPSCVISSSSSAQLVCVPSYLVKGKSMIYSLP " CDS complement(join(17004797..17004838,17005420..17005506, 17005594..17005668,17005895..17006008,17006169..17006255, 17006976..17007041,17007891..17007956,17009878..17009949, 17010048..17010149,17010271..17010448,17010569..17010624, 17011174..17011281,17011471..17011539,17011631..17011739, 17011815..17011903,17013099..17013176,17014058..17014180, 17016147..17016266,17016372..17016452,17016553..17016699, 17016796..17016874,17016990..17017064,17018720..17018829, 17020512..17020610,17020955..17021070,17021156..17021264, 17021392..17021610,17021690..17021955,17024735..17024892, 17024990..17025131,17025393..17025441)) /locus_tag="TCM_044465" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025045t1" /codon_start=1 /product="Ubiquitin-specific protease 12 isoform 1" /protein_id="EOY19368.1" /db_xref="Phytozome:GSVIVT01034603001" /db_xref="TAIR:AT5G06600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9P5" /translation="MLVPHNDFVDGPQPMEAAEAASTVDAQAVDDPPSGRFTWTIENF SRLNTKKLYSDIFFVGGYKWRILIFPKGNNVDHLSMYLDVADSATLPYGWSRYAQFSL AVVNQIHNKYTVRKDTQHQFNSRESDWGFTSFMPLGELYDPTRGFLVNDTCIVEADVA ARRVDDYWLHDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMP SGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDK MKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYASFDKYV EVERLEGDNRYHAEQYGLQDARKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYE FPLQLDLDRENGKYLSPEADRSVRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSDQWFK FDDERVTKEDMKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDK IICNVDEKDIAEHLRIRLKKEQEEKEQKRKEKAEAHLYTVIKVARDEDLVEQIGRDIY FDLVDHEKVRSFRIQKLTPFNVFKEEVAKEFGVPVQNQRFWLWAKRQNHTYRPNRPLT LQEEAQSVGQLREVSNKANNAELKLFLEVELGQDLRPVPPPERTKEDILLFFKLYDPF KEEFRYVGRMYVRSAGKPMEILARINKMAAFGPDEEIELYEEIKFEPNVMCEHIDKKL TFRTSQLEDGDILCFQKSSEVGSEQCRYPDVPSFLEYVHNRQVVRFRSLEKPKEDEFT LELSKLHNYDDVVERVAQHLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVEHLLDMLV HYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVLDD LKTKVELSHPNAELRLLEVFYHKIYKIFPLSDKIENINDQYWTLRAEEIPEEEKNLGP HDRLIHVYHFMKDTAQNQQVQNFGEPFFLVIHEDETLAEVKVRIQKKLQVPDEEFTKW RFAFLSLGRPEYLQDSDVVSTRFQRRDVYGAWEQYLGLEHSDNAPKRSYTANQNRHTF EKPVKIYN" CDS complement(join(17004811..17004838,17005420..17005506, 17005594..17005670,17005895..17006011,17006169..17006255, 17006976..17007041,17007891..17007956,17009878..17009949, 17010048..17010149,17010271..17010448,17010569..17010624, 17011174..17011281,17011471..17011539,17011631..17011739, 17011815..17011903,17013099..17013176,17014058..17014180, 17016147..17016266,17016372..17016452,17016553..17016699, 17016796..17016874,17016990..17017064,17018720..17018829, 17020512..17020610,17020955..17021070,17021156..17021264, 17021392..17021610,17021690..17021955,17024735..17024892, 17024990..17025131,17025393..17025456,17025693..17025722)) /locus_tag="TCM_044465" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG025045t1" /codon_start=1 /product="Ubiquitin-specific protease 12 isoform 3" /protein_id="EOY19370.1" /db_xref="Phytozome:GSVIVT01034603001" /db_xref="TAIR:AT5G06600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9P5" /translation="MTLMAPPPLDQEDDEMLVPHNDFVDGPQPMEAAEAASTVDAQAV DDPPSGRFTWTIENFSRLNTKKLYSDIFFVGGYKWRILIFPKGNNVDHLSMYLDVADS ATLPYGWSRYAQFSLAVVNQIHNKYTVRKDTQHQFNSRESDWGFTSFMPLGELYDPTR GFLVNDTCIVEADVAARRVDDYWLHDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYF RKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHD VQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLD VKGCKDVYASFDKYVEVERLEGDNRYHAEQYGLQDARKGVLFIDFPPVLQLQLKRFEY DFMRDTMVKINDRYEFPLQLDLDRENGKYLSPEADRSVRNLYTLHSVLVHSGGVHGGH YYAYIRPTLSDQWFKFDDERVTKEDMKRALEEQYGGEEELPQTNPGFNNTPFKFTKYS NAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEQKRKEKAEAHLYTVIKV ARDEDLVEQIGRDIYFDLVDHEKVRSFRIQKLTPFNVFKEEVAKEFGVPVQNQRFWLW AKRQNHTYRPNRPLTLQEEAQSVGQLREVSNKANNAELKLFLEVELGQDLRPVPPPER TKEDILLFFKLYDPFKEEFRYVGRMYVRSAGKPMEILARINKMAAFGPDEEIELYEEI KFEPNVMCEHIDKKLTFRTSQLEDGDILCFQKSSEVGSEQCRYPDVPSFLEYVHNRQV VRFRSLEKPKEDEFTLELSKLHNYDDVVERVAQHLGLDDPSKIRLTSHNCYSQQPKPQ PIKYRGVEHLLDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHT IRLPKQSTVGDVLDDLKTKVELSHPNAELRLLEVFYHKIYKIFPLSDKIENINDQYWT LRAEEIPEEEKNLGPHDRLIHVYHFMKDTAQNQQQVQNFGEPFFLVIHEDETLAEVKV RIQKKLQVPDEEFTKSGGLHFYHWVVPSIFRTLMLCLLVFREGMYMALGNSILDWNTP TMPLRGHIQQIRIVIHLRSQ" mobile_element complement(17029307..17029726) /note="source:scaffold_5_CACTA_0602 2922 3343" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17029727..17032828) /note="source:CACAO_M_E71532_F15_scaffold_10 1 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17032829..17035403) /note="source:CACAO_M_E22588_F143_scaffold_3 1 2575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17037957..17038483) /note="source:scaffold_7_CACTA_0789 11198 11719" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17039467..17039919) /note="source:scaffold_7_CACTA_0789 10271 10732" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17040067..17040484) /note="source:scaffold_5_CACTA_0596 395 801" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17040415..17040550 /note="source:INTACT39F_F22_scaffold_1-int 6629 6765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17040551..17043452) /note="source:CACAO_M_E71529_F86_scaffold_10 1 2902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17047093..17050051) /note="source:CACAO_M_E71526_F33_scaffold_10 1 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17052700..17053243) /note="source:CACAO_M_E52819_F33_scaffold_8 2226 2771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17059107..17060461) /note="source:CACAO_M_E33422_F33_scaffold_4 1 1354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17065052..17065150) /note="source:scaffold_9_CACTA_0934 13628 13725" /mobile_element_type="transposon:TIR/CACTA" gene complement(17066589..17068078) /locus_tag="TCM_044470" /note="dbxref CacaoGD:Thecc1EG044470" mRNA complement(join(17066589..17067027,17067345..17068078)) /locus_tag="TCM_044470" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.28 coverage" CDS complement(17067703..17067921) /locus_tag="TCM_044470" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19371.1" /translation="MSKARRRLRTFWSSMIGLCWWLIQGGASPRSLVEQVLGQGARKV TVEEILWFVWRIGFYCCSRDDMAMFILS" mobile_element 17067911..17068038 /note="source:CACAO_M_E11098_F15_scaffold_2 17650 17778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17067924..17068409) /note="source:CACAO_M_E14081_F316_scaffold_3 13098 13583" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17068510..17069365) /note="source:CACAO_on_S_E390_scaffold_9 13440 14296" /mobile_element_type="transposon:TIR/Mutator" mobile_element 17069825..17070354 /note="source:CACAO_M_E52617_F328_scaffold_7 21509 22053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17070457..17070841) /note="source:CACAO_M_E297_F134_scaffold_1 1 396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17072771..17072851) /note="source:CACAO_M_E40726_F85_scaffold_5 1777 1858" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17072838..17113152 /locus_tag="TCM_044473" /note="dbxref CacaoGD:Thecc1EG044473" mRNA join(17072838..17072912,17080526..17080585, 17096515..17096615,17108862..17109030,17111055..17111138, 17112049..17113152) /locus_tag="TCM_044473" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045733t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.31 coverage" mobile_element 17074287..17076023 /note="source:CACAO_M_S_E90022_F9_scaffold_8 1 1732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17076061..17079002) /note="source:CACAO_M_E71523_F134_scaffold_10 1 2942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17079009..17079548) /note="source:CACAO_M_E53201_F9_scaffold_8 10118 10658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17080315..17083641) /note="source:CACAO_M_E71522_F85_scaffold_10 1 3327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17084018..17084095 /note="source:CACAO_M_E72867_F9_scaffold_10 22649 22730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17084592..17089378 /note="source:CACAO_M_S_E90022_F9_scaffold_8 4753 9548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17091184..17094349 /note="source:CACAO_M_E71405_F316_scaffold_10 4798 7988" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17094780..17097447) /note="source:CACAO_M_E58324_F9_scaffold_9 494 3144" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17098402..17100263) /note="source:CACAO_M_E71517_F4_scaffold_10 1 1862" /mobile_element_type="retrotransposon:LTR/Copia" gene 17102437..17122243 /locus_tag="TCM_044476" /note="dbxref CacaoGD:Thecc1EG044476" mRNA join(17102437..17102529,17106712..17106786, 17114544..17114592,17121082..17121174,17121310..17121463, 17121548..17122243) /locus_tag="TCM_044476" /product="No pollen germination related 2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020943t3" /inference="similar to AA sequence:Phytozome:Glyma10g32710.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc2417t1_G2" mobile_element complement(17105784..17108481) /note="source:CACAO_M_S_E121897_F231_scaffold_10 1 2698" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(17108891..17109030,17111055..17111138, 17112049..17112166) /locus_tag="TCM_044473" /note="paralog of Thecc1EG045733t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19372.1" /translation="MGLPTKLVHRSWTPGLGRDSLSLINLGPTMYNPIAHWAFMKLSL HLVLVTAVAGFVGQPIRGARNSVIFLPRSKREVRKLILKPCEVSIGILGNEYLSEHHG YCHELKESTGS" mobile_element complement(17109374..17112168) /note="source:INTACT771_F78_scaffold_10-int 1 2849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17114154..17114281) /note="source:CACAO_M_S_E32835_F9_scaffold_4 1299 1422" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17114328..17114969) /note="source:scaffold_5_CACTA_0601 8100 8736" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17115539..17116512 /note="source:INTACT176_F12_scaffold_8-int 2701 3667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17116613..17118364 /note="source:INTACT176_F12_scaffold_8-int 3670 5436" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(17121112..17121174,17121310..17121463, 17121548..17121864) /locus_tag="TCM_044476" /note="paralog of Thecc1EG020943t3" /codon_start=1 /product="No pollen germination related 2, putative" /protein_id="EOY19373.1" /db_xref="Phytozome:Glyma10g32710.1" /db_xref="TAIR:AT4G28600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q337L2" /translation="METWHDLANVYTSLSQWRDAELLFLKLLLLYGIDESNGFNLFSK HVKSSSSQKYWEDKIAWNYLSLISSSCISLLNEAKGFHQEALRSYRKALDVEPTHVPS LISTACILRQLGGQSMPIVRSFLTDALRLDRTNPAAGYNLGLLYKADASASALEAAEC FEAAALLEESAPIEPFR" gene 17122249..17125807 /locus_tag="TCM_044478" /note="dbxref CacaoGD:Thecc1EG044478" mRNA join(17122249..17122470,17123872..17123920, 17124586..17125807) /locus_tag="TCM_044478" /product="Ethylene response factor 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb06g024530.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014892t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15550.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc12088t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc3315t1" gene complement(17122381..17124446) /locus_tag="TCM_044479" /note="dbxref CacaoGD:Thecc1EG044479" mRNA complement(join(17122381..17123071,17124136..17124446)) /locus_tag="TCM_044479" /product="Ribosomal L28 family" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s16970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020946t1" /inference="similar to AA sequence:Phytozome:GSVIVT01027870001" /note="quality class is medium, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc2465t1_G2" CDS join(17122384..17122470,17123872..17123920, 17124586..17125286) /locus_tag="TCM_044478" /note="paralog of Thecc1EG014892t1" /codon_start=1 /product="Ethylene response factor 2" /protein_id="EOY19374.1" /db_xref="Phytozome:POPTR_0001s15550.1" /db_xref="TAIR:AT2G44940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8VD29" /translation="MKSYLFVSNYLKSQCSTKHNLLSLVMSESTKGMDCSDKDFFNLI TYSCSINTFASPSSLAFMDLKYIKQSFRKKRSIREKRLTEANERGEKSFKKGKAYRHP TYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTADMAARAHDVASMVIKGDSAYLNFP ESAHELPRPASSSRRDIQEAANKAAYAMVDQHNAMIEVKTEPSQDEMPVPQSPSTTTM SCETQGSPSSQSVDSDSMWFDLPDLSLEANSSHRFGYTSWWQQAGIDTEFQFEETMGW DK" CDS complement(join(17122839..17123071,17124136..17124214)) /locus_tag="TCM_044479" /note="paralog of Thecc1EG020946t1" /codon_start=1 /product="Ribosomal L28 family" /protein_id="EOY19375.1" /db_xref="Phytozome:GSVIVT01027870001" /db_xref="TAIR:AT2G33450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22795" /translation="MSSSRNMEKTPPIFLATLRATFTSDFRRVCPFTGKKANKANKVS FSNHKTKKLQFVNLQCKKVWWEAGKRYIKLRLSTKALKTIEKNGLDAVAKKAGIDLRK E" mobile_element 17125654..17125965 /note="source:CACAO_on_E33_A_scaffold_3 7601 7969" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 17125951..17139123 /locus_tag="TCM_044480" /note="dbxref CacaoGD:Thecc1EG044480" mRNA join(17125951..17126045,17135131..17135550, 17135686..17135736,17136059..17136280,17136530..17136652, 17137503..17137679,17138400..17139123) /locus_tag="TCM_044480" /product="White-brown-complex ABC transporter family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01320.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01320.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc36t4" mRNA join(17125951..17126045,17135131..17135550, 17135686..17135736,17136059..17136280,17137503..17137679, 17138400..17138503,17138659..17139123) /locus_tag="TCM_044480" /product="Non-intrinsic ABC protein 7 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01320.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01320.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b042912t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc36t4" mRNA join(17135113..17135550,17135686..17135736, 17136059..17136280,17136530..17136652,17137503..17137679, 17138400..17138503,17138659..17139088) /locus_tag="TCM_044480" /product="White-brown-complex ABC transporter family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01320.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01320.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc36t4; alternateUTRof:Thecc1EG044480t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc36t4" mRNA join(17135113..17135550,17135686..17135736, 17136059..17136280,17136530..17136652,17137503..17137529, 17138481..17139088) /locus_tag="TCM_044480" /product="White-brown-complex ABC transporter family isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01320.1" /inference="similar to AA sequence:ricco:29840.m000605" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9003t10; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc36t4" mRNA join(17135113..17135550,17136059..17136280, 17136530..17136652,17137503..17137679,17138400..17139088) /locus_tag="TCM_044480" /product="White-brown-complex ABC transporter family isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01320.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01320.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc36t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc36t4" mRNA join(17135113..17135550,17136059..17136280, 17136530..17136652,17137503..17137529,17138481..17139088) /locus_tag="TCM_044480" /product="Non-intrinsic ABC protein 7 isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01320.1" /inference="similar to AA sequence:ricco:29840.m000605" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9003t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc36t4" mRNA join(17135148..17135550,17135686..17135739, 17136059..17136280,17137503..17137679,17138400..17138997) /locus_tag="TCM_044480" /product="Non-intrinsic ABC protein 7 isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01320.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01320.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4936t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc36t4" CDS join(17135239..17135550,17135686..17135739, 17136059..17136280,17137503..17137679,17138400..17138486) /locus_tag="TCM_044480" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Non-intrinsic ABC protein 7 isoform 6" /protein_id="EOY19381.1" /db_xref="Phytozome:POPTR_0008s01320.1" /db_xref="TAIR:AT3G10670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKI2" /translation="MAWQIQCTASSPPASPPPFTPKCLPPRSLFFTLSATSSSRFCPP HMPSLRSVTCSLSAVESPTSTAGLDDSKTPLLEVKGLTAVIAETKQEILKGVNLVVHQ GEIHAIMGKNGSGKSTFSKVVLVGHPDYEVTGGSVVFKGENLLDMEPEERSLAGLFMS FQAPIEIPGVNNIDFLHMAYNARRKKLGEPELGPLEVLGADLAILDEIDSGLDIDALR DVAKAVNGLLTPKNSVLMITHYRRLLEVIKPTCIHIMEDGRIIKTGDSSLAKVLEEKG YTSISAE" CDS join(17135239..17135550,17135686..17135736, 17136059..17136280,17136530..17136652,17137503..17137679, 17138400..17138486) /locus_tag="TCM_044480" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="White-brown-complex ABC transporter family isoform 1" /protein_id="EOY19376.1" /db_xref="Phytozome:POPTR_0008s01320.1" /db_xref="TAIR:AT3G10670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKI2" /translation="MAWQIQCTASSPPASPPPFTPKCLPPRSLFFTLSATSSSRFCPP HMPSLRSVTCSLSAVESPTSTAGLDDSKTPLLEVKGLTAVIAETKQEILKGVNLVVHQ GEIHAIMGKNGSGKSTFSKVLVGHPDYEVTGGSVVFKGENLLDMEPEERSLAGLFMSF QAPIEIPGVNNIDFLHMAYNARRKKLGEPELGPLEFYAYIYPKLDLVNMKTDFLNRNV NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDIDALRDVAKAVNGLLTPKNSVLM ITHYRRLLEVIKPTCIHIMEDGRIIKTGDSSLAKVLEEKGYTSISAE" CDS join(17135239..17135550,17135686..17135736, 17136059..17136280,17136530..17136652,17137503..17137679, 17138400..17138486) /locus_tag="TCM_044480" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="White-brown-complex ABC transporter family isoform 1" /protein_id="EOY19377.1" /db_xref="Phytozome:POPTR_0008s01320.1" /db_xref="TAIR:AT3G10670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKI2" /translation="MAWQIQCTASSPPASPPPFTPKCLPPRSLFFTLSATSSSRFCPP HMPSLRSVTCSLSAVESPTSTAGLDDSKTPLLEVKGLTAVIAETKQEILKGVNLVVHQ GEIHAIMGKNGSGKSTFSKVLVGHPDYEVTGGSVVFKGENLLDMEPEERSLAGLFMSF QAPIEIPGVNNIDFLHMAYNARRKKLGEPELGPLEFYAYIYPKLDLVNMKTDFLNRNV NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDIDALRDVAKAVNGLLTPKNSVLM ITHYRRLLEVIKPTCIHIMEDGRIIKTGDSSLAKVLEEKGYTSISAE" CDS join(17135239..17135550,17135686..17135736, 17136059..17136280,17136530..17136652,17137503..17137529, 17138481..17138486) /locus_tag="TCM_044480" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29840.m000605" /codon_start=1 /product="White-brown-complex ABC transporter family isoform 4" /protein_id="EOY19379.1" /db_xref="TAIR:AT3G10670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKI2" /translation="MAWQIQCTASSPPASPPPFTPKCLPPRSLFFTLSATSSSRFCPP HMPSLRSVTCSLSAVESPTSTAGLDDSKTPLLEVKGLTAVIAETKQEILKGVNLVVHQ GEIHAIMGKNGSGKSTFSKVLVGHPDYEVTGGSVVFKGENLLDMEPEERSLAGLFMSF QAPIEIPGVNNIDFLHMAYNARRKKLGEPELGPLEFYAYIYPKLDLVNMKTDFLNRNV NEGFSGGERKRNEILQLAVLGADLAILE" CDS join(17135239..17135550,17135686..17135736, 17136059..17136280,17137503..17137679,17138400..17138486) /locus_tag="TCM_044480" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Non-intrinsic ABC protein 7 isoform 3" /protein_id="EOY19378.1" /db_xref="Phytozome:POPTR_0008s01320.1" /db_xref="TAIR:AT3G10670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKI2" /translation="MAWQIQCTASSPPASPPPFTPKCLPPRSLFFTLSATSSSRFCPP HMPSLRSVTCSLSAVESPTSTAGLDDSKTPLLEVKGLTAVIAETKQEILKGVNLVVHQ GEIHAIMGKNGSGKSTFSKVLVGHPDYEVTGGSVVFKGENLLDMEPEERSLAGLFMSF QAPIEIPGVNNIDFLHMAYNARRKKLGEPELGPLEVLGADLAILDEIDSGLDIDALRD VAKAVNGLLTPKNSVLMITHYRRLLEVIKPTCIHIMEDGRIIKTGDSSLAKVLEEKGY TSISAE" CDS join(17135239..17135550,17136059..17136280, 17136530..17136652,17137503..17137679,17138400..17138486) /locus_tag="TCM_044480" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="White-brown-complex ABC transporter family isoform 5" /protein_id="EOY19380.1" /db_xref="Phytozome:POPTR_0008s01320.1" /db_xref="TAIR:AT3G10670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKI2" /translation="MAWQIQCTASSPPASPPPFTPKCLPPRSLFFTLSATSSSRFCPP HMPSLRSVTCSLSAVESPTSTAGLDDSKTPLLEVKGLTAVIAETKQEILKGVNLVVHQ GEVLVGHPDYEVTGGSVVFKGENLLDMEPEERSLAGLFMSFQAPIEIPGVNNIDFLHM AYNARRKKLGEPELGPLEFYAYIYPKLDLVNMKTDFLNRNVNEGFSGGERKRNEILQL AVLGADLAILDEIDSGLDIDALRDVAKAVNGLLTPKNSVLMITHYRRLLEVIKPTCIH IMEDGRIIKTGDSSLAKVLEEKGYTSISAE" CDS join(17135239..17135550,17136059..17136280, 17136530..17136652,17137503..17137529,17138481..17138486) /locus_tag="TCM_044480" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29840.m000605" /codon_start=1 /product="Non-intrinsic ABC protein 7 isoform 7" /protein_id="EOY19382.1" /db_xref="TAIR:AT3G10670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKI2" /translation="MAWQIQCTASSPPASPPPFTPKCLPPRSLFFTLSATSSSRFCPP HMPSLRSVTCSLSAVESPTSTAGLDDSKTPLLEVKGLTAVIAETKQEILKGVNLVVHQ GEVLVGHPDYEVTGGSVVFKGENLLDMEPEERSLAGLFMSFQAPIEIPGVNNIDFLHM AYNARRKKLGEPELGPLEFYAYIYPKLDLVNMKTDFLNRNVNEGFSGGERKRNEILQL AVLGADLAILE" gene complement(17139126..17144676) /locus_tag="TCM_044481" /note="dbxref CacaoGD:Thecc1EG044481" mRNA complement(join(17139126..17139163,17141774..17142306, 17144603..17144676)) /locus_tag="TCM_044481" /product="Ribosomal protein S5 domain 2-like superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007091t1" /inference="similar to AA sequence:Phytozome:Glyma07g33800.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage" mobile_element complement(17140828..17141655) /note="source:scaffold_6_CACTA_0713 7560 8233" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(17141868..17142306,17144603..17144613)) /locus_tag="TCM_044481" /note="paralog of Thecc1EG007091t1" /codon_start=1 /product="Ribosomal protein S5 domain 2-like superfamily protein" /protein_id="EOY19383.1" /db_xref="Phytozome:Glyma07g33800.1" /db_xref="TAIR:AT2G09990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SK22" /translation="MAYRVEKASIESVQCCSHKKTAEVVTYCNRASGLIKINGCAIEL VEPEILHFKAVEPILLLGRQRFAGVNMRIRVKGNGHISQIYAIRQSIAKALVAFYQKY VDEQSKKEIKDILVRYDRTLLVADPKRYEPKKFGGRGARARFQNRYR" mobile_element complement(17142385..17142846) /note="source:scaffold_6_CACTA_0713 7900 8306" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17142837..17142963) /note="source:scaffold_6_CACTA_0713 8175 8300" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17143016..17143230) /note="source:scaffold_6_CACTA_0713 752 966" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17143628..17145941) /note="source:CACAO_M_E53201_F9_scaffold_8 10118 12425" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17144771..17156879 /locus_tag="TCM_044482" /note="dbxref CacaoGD:Thecc1EG044482" mRNA join(17144771..17144786,17152769..17152887, 17153365..17155081,17155632..17155682,17155768..17155880, 17156119..17156879) /locus_tag="TCM_044482" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023163001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014412t1" /inference="similar to AA sequence:Phytozome:GSVIVT01023189001" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8549t1" mobile_element complement(17147251..17150013) /note="source:CACAO_M_S_E121893_F87_scaffold_10 1 2763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17150427..17151208) /note="source:CACAO_M_S_E16386_F9_scaffold_2 5766 6555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17151209..17151345 /note="source:INTACT407F_F356_scaffold_4-int 15414 15550" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17151294..17151357) /note="source:INTACT265_F12_scaffold_7-int 17536 17601" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(17153479..17155081,17155632..17155682, 17155768..17155880,17156119..17156730) /locus_tag="TCM_044482" /note="paralog of Thecc1EG014412t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19384.1" /db_xref="Phytozome:GSVIVT01023189001" /db_xref="TAIR:AT1G07090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C6Y9" /translation="MYEFGHEVGGSGLSKPPKEEELVGKEIDLMDNKVSELPESPNCP SLIVLRLQRNYDLGALPPLFFQRMPLLQLLDLSNTSIKSLPKSLPKLVALKKLFLRGC KLFMKLSPQVGKLDNLEELDLDETQIINLPVDIGRLVKLRLLKVSFYGHTNFSKRKLQ SNLVLHPETISNLSQLTELSIDVDPSDKRWDDSVEAVVKGVCNSKGLRSLSLYLPKVQ LLDFISLIYPSLTRFRFILGYDKRRIISRVPHEAEAEFRKWDRCLKFVNGENIPIQIR QVLKISASFFLDRHANAMNLSEFGNENLKMLKCCLLAECNEMETIIDGSELDPGSAEN VLESLQYLSLYYMKNLRSIWKGPLRYGCMSKLKFLALHTCPKLRNIFSHTLLQSFVSL EEFILEDCPKVASLVSHESVKPISDTCLPTLKRLFLLYLPELVSIFNGLFIAPKLERI GFYNCPKLKCLSKRELSSKQLKMIKGESQWWEDIEWNETEWGTRPDYLMHIFSPVKNE EDVMTELAQDKDLSEATIKNGGQKYTDDGKLLDVVRQHKGPWPDCVMEKTMTDNVTKP ISSPSRRMPPSMSPPYFIPPQFNRQQALSFQDSAQNDFSSEKNLSNCSNTIVTAATDK NIISTTTPASSTSTPPPSLIPSRYESQKRRDWNTFGQYLRNHRPPLSLSQCSAAHVLE FLRYLDQFGKTKVHIQICPFFGNPQPPAPCTCPLRQAWGSLDAIIGRLSNAYEEHGGK PEGNPFRARDVRIYLREVRDLQARARGLNYKKRKLPKLKVAPTTFADATTSE" gene 17157706..17159350 /locus_tag="TCM_044483" /note="dbxref CacaoGD:Thecc1EG044483" mRNA join(17157706..17157750,17158771..17159350) /locus_tag="TCM_044483" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039739t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 17158849..17159151 /locus_tag="TCM_044483" /note="paralog of Thecc1EG039739t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19385.1" /translation="MQPLLKNATSLLPFANDTMMVVSDDNAFDQMDYDCAKDDTTDWN DDNYVGRHYDCLNEDKGDDNSIPNCNHVDGSTKHATIVVLEDVQYDDATTVGLEDV" mobile_element 17159674..17160583 /note="source:CACAO_M_E3884_F22_scaffold_1 19182 20111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17160014..17162381) /note="source:INTACT407F_F356_scaffold_4-int 12930 15324" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17162374..17164287 /note="source:INTACT295_F13_scaffold_9-int 2970 4871" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17164285..17167246) /note="source:CACAO_M_E71512_F134_scaffold_10 1 2962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17167248..17172506) /note="source:INTACT135F_F90_scaffold_2-int 246 5531" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17171887..17172832 /note="source:INTACT685_F13_scaffold_5-int 7068 8018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17178939..17187554 /note="source:CACAO_M_E84368_F4_scaffold_10 4512 13218" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(17187533..17190270) /locus_tag="TCM_044486" /note="dbxref CacaoGD:Thecc1EG044486" mRNA complement(join(17187533..17187728,17187883..17187944, 17188065..17188152,17190058..17190270)) /locus_tag="TCM_044486" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(17187600..17187728,17187883..17187944, 17188065..17188101)) /locus_tag="TCM_044486" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19386.1" /translation="MMTCKLMEKLNLALEKLSKDHAGRYATGDEVYMADLFLAPQIDF ATKTFKVDMVMSLPELVTINMCVASTCMCMH" mobile_element 17187793..17187885 /note="source:CACAO_M_E14347_F12_scaffold_3 8760 8839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17187819..17187897 /note="source:scaffold_1_CACTA_0011 7477 7560" /mobile_element_type="transposon:TIR/CACTA" gene complement(17190383..17194737) /locus_tag="TCM_044487" /note="dbxref CacaoGD:Thecc1EG044487" mRNA complement(join(17190383..17190789,17191197..17191327, 17191660..17191719,17192296..17192357,17193342..17193417, 17193550..17193597,17193988..17194059,17194153..17194238, 17194333..17194389,17194465..17194549,17194646..17194737)) /locus_tag="TCM_044487" /product="Glutathione S-transferase 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005510t1" /inference="similar to AA sequence:ricco:30063.m001430" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b042921t1a3; inference alignment:Newbler:10:TSA:cgbaP1_g05704t00001" mRNA complement(join(17190383..17190789,17191197..17191327, 17191660..17191719,17192296..17192357,17193342..17193417, 17193544..17193597,17193988..17194059,17194153..17194238, 17194333..17194549,17194646..17194729)) /locus_tag="TCM_044487" /product="Glutathione S-transferase 2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005510t1" /inference="similar to AA sequence:ricco:30063.m001430" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b042921t1a7; inference alignment:Newbler:10:TSA:cgbaP1_g05704t00001" mRNA complement(join(17190467..17190789,17191660..17191719, 17192296..17192357,17193342..17193417,17193544..17193597, 17193988..17194059,17194153..17194238,17194333..17194389, 17194465..17194549,17194646..17194737)) /locus_tag="TCM_044487" /product="Glutathione S-transferase zeta 1 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005510t1" /inference="similar to AA sequence:ricco:30063.m001430" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00192t00004; inference alignment:Newbler:10:TSA:cgbaP1_g05704t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4596t1" mRNA complement(join(17190471..17190789,17191225..17191327, 17191660..17191719,17192296..17192357,17193342..17193417, 17193544..17193597,17193988..17194059,17194153..17194238, 17194333..17194389,17194465..17194549,17194646..17194733)) /locus_tag="TCM_044487" /product="Glutathione S-transferase 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005510t1" /inference="similar to AA sequence:ricco:30063.m001430" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03271t00002; inference alignment:Newbler:10:TSA:cgbaP1_g05704t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4596t1" mRNA complement(join(17190515..17190789,17191197..17191327, 17191660..17191719,17192296..17192357,17193342..17193417, 17193544..17193597,17193988..17194059,17194153..17194238, 17194333..17194389,17194465..17194549,17194646..17194677)) /locus_tag="TCM_044487" /product="Glutathione S-transferase zeta 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005510t1" /inference="similar to AA sequence:ricco:30063.m001430" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05704t00001; inference alignment:Newbler:10:TSA:cgbaP1_g05704t00001" CDS complement(join(17190743..17190789,17191225..17191327, 17191660..17191719,17192296..17192357,17193342..17193417, 17193544..17193597,17193988..17194059,17194153..17194238, 17194333..17194389,17194465..17194549,17194646..17194648)) /locus_tag="TCM_044487" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30063.m001430; paralog of Thecc1EG005510t1" /codon_start=1 /product="Glutathione S-transferase 2 isoform 3" /protein_id="EOY19389.1" /db_xref="TAIR:AT2G02390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVQ3" /translation="MAHEEKKLKLYSYWRSSCSCRIRIALNLKGLEYQYIPVNLLKGE QFSPEFQKLNPIGYVPVLVDGDIVISDSFAIFMYLEEKYPQHPLLPSDLQKKALNFQA ANIVCSSIQPLQNLAVLKYIEEKASPDEKIPWAKRHIEKGFEALEKLLKDHAGIYATG DEVFMADLFLAPQVHAGIKRFNVDMAKFPLLSRLNEAYSELPHFQNAMPENQPDSPSA WGSMANSSTKSIKCHK" CDS complement(join(17190757..17190789,17191660..17191719, 17192296..17192357,17193342..17193417,17193544..17193597, 17193988..17194059,17194153..17194238,17194333..17194389, 17194465..17194549,17194646..17194648)) /locus_tag="TCM_044487" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30063.m001430; paralog of Thecc1EG005510t1" /codon_start=1 /product="Glutathione S-transferase zeta 1 isoform 5" /protein_id="EOY19391.1" /db_xref="TAIR:AT2G02390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVQ3" /translation="MAHEEKKLKLYSYWRSSCSCRIRIALNLKGLEYQYIPVNLLKGE QFSPEFQKLNPIGYVPVLVDGDIVISDSFAIFMYLEEKYPQHPLLPSDLQKKALNFQA ANIVCSSIQPLQNLAVLKYIEEKASPDEKIPWAKRHIEKGFEALEKLLKDHAGIYATG DEVFMADLFLAPQVHAGIKRFNVDMVPWQTHPQKA" CDS complement(join(17191214..17191327,17191660..17191719, 17192296..17192357,17193342..17193417,17193550..17193597, 17193988..17194059,17194153..17194238,17194333..17194389, 17194465..17194549,17194646..17194648)) /locus_tag="TCM_044487" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30063.m001430; paralog of Thecc1EG005510t1" /codon_start=1 /product="Glutathione S-transferase 2 isoform 2" /protein_id="EOY19388.1" /db_xref="TAIR:AT2G02390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVQ3" /translation="MAHEEKKLKLYSYWRSSCSCRIRIALNLKGLEYQYIPVNLLKGE QFSPEFQKLNPIGYVPVLVDGDIVISDSFAIFMYLEEKYPQHPLLPSDLQKKALNFQA ANIVCSSIQPLQNLAKYIEEKASPDEKIPWAKRHIEKGFEALEKLLKDHAGIYATGDE VFMADLFLAPQVHAGIKRFNVDMAKFPLLSRLNEAYSELPHFQNAMPENQPDSPSAWG TC" CDS complement(join(17191214..17191327,17191660..17191719, 17192296..17192357,17193342..17193417,17193544..17193597, 17193988..17194059,17194153..17194238,17194333..17194389, 17194465..17194549,17194646..17194648)) /locus_tag="TCM_044487" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30063.m001430; paralog of Thecc1EG005510t1" /codon_start=1 /product="Glutathione S-transferase zeta 1 isoform 1" /protein_id="EOY19387.1" /db_xref="TAIR:AT2G02390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVQ3" /translation="MAHEEKKLKLYSYWRSSCSCRIRIALNLKGLEYQYIPVNLLKGE QFSPEFQKLNPIGYVPVLVDGDIVISDSFAIFMYLEEKYPQHPLLPSDLQKKALNFQA ANIVCSSIQPLQNLAVLKYIEEKASPDEKIPWAKRHIEKGFEALEKLLKDHAGIYATG DEVFMADLFLAPQVHAGIKRFNVDMAKFPLLSRLNEAYSELPHFQNAMPENQPDSPSA WGTC" CDS complement(join(17191214..17191327,17191660..17191719, 17192296..17192357,17193342..17193417,17193544..17193597, 17193988..17194059,17194153..17194238,17194333..17194549, 17194646..17194648)) /locus_tag="TCM_044487" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30063.m001430; paralog of Thecc1EG005510t1" /codon_start=1 /product="Glutathione S-transferase 2 isoform 4" /protein_id="EOY19390.1" /db_xref="TAIR:AT2G02390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVQ3" /translation="MAHEEKKLKLYSYWRSSCSCRIRIALNLKGSFFSILSFLHLLLT TFGYRLLSVAGLEYQYIPVNLLKGEQFSPEFQKLNPIGYVPVLVDGDIVISDSFAIFM YLEEKYPQHPLLPSDLQKKALNFQAANIVCSSIQPLQNLAVLKYIEEKASPDEKIPWA KRHIEKGFEALEKLLKDHAGIYATGDEVFMADLFLAPQVHAGIKRFNVDMAKFPLLSR LNEAYSELPHFQNAMPENQPDSPSAWGTC" gene 17195206..17207404 /locus_tag="TCM_044488" /note="dbxref CacaoGD:Thecc1EG044488" mRNA join(17195206..17195312,17196526..17197178, 17197262..17197294,17197610..17197716,17198024..17198110, 17202503..17202562,17207167..17207404) /locus_tag="TCM_044488" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(17196944..17197178,17197262..17197294, 17197610..17197716,17198024..17198110,17202503..17202562, 17207167..17207355) /locus_tag="TCM_044488" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19392.1" /translation="MALLLIVKQYFLRTRPQKSGDSMAVVTSREHRLVECVPMRPLLM ESNYGLHIKGLPSSTNGISSKEMLPPLWICMGASVLSVEAVPDIQIGGSSTLQSPKKR KIIERKEKRVTKVIKQRRIMDEEVFNEGRILMEEREQFQGADLHSICFGISTDPYRPS VKDAVKICMDAGVKVVCWDCFVYANIQKFIQFQLTVNVDALVINVVVALSSSDVPLNL VRVQFFLCPSNVLTSVLI" mobile_element complement(17197813..17199354) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6734 8217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17203878..17203897 /note="source:INTACT610_F272_scaffold_5-int 12168 12271" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17203898..17203986 /note="source:scaffold_9_CACTA_0931 3052 3140" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17204826..17204872) /note="source:CACAO_M_S_E119615_F3_scaffold_9 14635 14681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17205918..17205978 /note="source:CACAO_M_E1841_F5_scaffold_1 28129 28189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17205925..17205983) /note="source:CACAO_M_E58819_F24_scaffold_9 160 215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17205961..17206038 /note="source:scaffold_1_CACTA_0011 3487 3564" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17206042..17206302 /note="source:scaffold_1_CACTA_0011 3496 3754" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17206219..17206432 /note="source:CACAO_M_E3884_F22_scaffold_1 23277 23490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17206539..17206935 /note="source:CACAO_M_E3884_F22_scaffold_1 12746 13130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17206935..17207136) /note="source:INTACT83_F5_scaffold_9-int 11473 11673" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(17208429..17208781,17209552..17210811, 17211908..17212075,17213263..17213942,17214311..17214590, 17214790..17215079,17215650..17215918,17216497..17216894) /locus_tag="TCM_044376" /product="GC-rich sequence DNA-binding factor-like protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g03420.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s00320.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc456t2; alternateUTRof:Thecc1EG044376t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc274t58; inference alignment:Newbler:10:TSA:cgbaP1_g14039t00001" CDS join(17209618..17210811,17211908..17212075, 17213263..17213942,17214311..17214590,17214790..17215079, 17215650..17215842) /locus_tag="TCM_044376" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="GC-rich sequence DNA-binding factor-like protein, putative isoform 1" /protein_id="EOY19310.1" /db_xref="Phytozome:POPTR_0008s00320.1" /db_xref="TAIR:AT5G08550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNN3" /translation="MSSAIRARNFRRRGDDIDDDGNDDNNTPNIASATVTATKKPSSS KPTAKKPPKLLSFADDENEEETTKPSSNRNRDKEREKPFSSRVSKPLSAHKITSTKDC KTPSTLPSNVQPQAGTYTKEALLELQKNMRTLAAPSSRASSVSSEPKIVLKGLLKPQS QNLNSERDNDPPEKLQKDDTESRLATMAAGKGVDLDFSAFPDQATIDAIKAKKDRVRK SFARPAPDYISLDRGSNLGGAMEEELSDDEEPEFPGRLFGESGKKGVFEVIEERAVGV GLRKDGIHDEDDDDNEEEKMWEEEQFRKGLGKRMDDSSNRVVSSSNNSGGVGMVHNMQ QQHQQRYGYSTMGSYGSMMPSVSPAPPSSIVGAAGASQGLDVTSISQQAEITKKALQE NVRRLKESHDRTISSLTKADENLSASLFNITALEKSLSAAGEKFIFMQKLRDFVSVIC EFLQHKAPLIEELEEHMQKLNEERALSVLERRSANNDDEMVEVEAAVTAAMLVFSECG NSAAMIEVAANAAQAAAAAIRGQVNLPVKLDEFGRDVNRQKHLDMERRAEARQRRKAR FDSKRLSSMEIDSSYQKIEGESSTDESDSESTAYRSNRDMLLQTADEIFGDASEEYSQ LSLVKERFERWKKDYSSSYRDAYMSLSIPAIFSPYVRLELLKWDPLHVDEDFSDMKWH NLLFNYGFPEDGSFAPDDADANLVPALVEKVALPVLHHEISHCWDMLSMQETKNAVSA TSLIIDYVPASSEALAELLVTIRTRLSEAVADIMVPTWSPLVMKAVPNAARVAAYRFG MSVRLMRNICLWKEILALPILEKLALDELLYGKILPHVRNITSDVHDAVTRTERIVAS LSGVWAGTNVIQDSSRKLQPLVDYVLLLGKTLERRHASGVTESGTGGLARRLKKMLVE LNEYDSARDIARRFHLKEAL" CDS join(17209618..17210811,17211908..17212075, 17213263..17213942,17214311..17214590,17214790..17215079, 17215650..17215842) /locus_tag="TCM_044376" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="GC-rich sequence DNA-binding factor-like protein, putative isoform 1" /protein_id="EOY19311.1" /db_xref="Phytozome:POPTR_0008s00320.1" /db_xref="TAIR:AT5G08550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNN3" /translation="MSSAIRARNFRRRGDDIDDDGNDDNNTPNIASATVTATKKPSSS KPTAKKPPKLLSFADDENEEETTKPSSNRNRDKEREKPFSSRVSKPLSAHKITSTKDC KTPSTLPSNVQPQAGTYTKEALLELQKNMRTLAAPSSRASSVSSEPKIVLKGLLKPQS QNLNSERDNDPPEKLQKDDTESRLATMAAGKGVDLDFSAFPDQATIDAIKAKKDRVRK SFARPAPDYISLDRGSNLGGAMEEELSDDEEPEFPGRLFGESGKKGVFEVIEERAVGV GLRKDGIHDEDDDDNEEEKMWEEEQFRKGLGKRMDDSSNRVVSSSNNSGGVGMVHNMQ QQHQQRYGYSTMGSYGSMMPSVSPAPPSSIVGAAGASQGLDVTSISQQAEITKKALQE NVRRLKESHDRTISSLTKADENLSASLFNITALEKSLSAAGEKFIFMQKLRDFVSVIC EFLQHKAPLIEELEEHMQKLNEERALSVLERRSANNDDEMVEVEAAVTAAMLVFSECG NSAAMIEVAANAAQAAAAAIRGQVNLPVKLDEFGRDVNRQKHLDMERRAEARQRRKAR FDSKRLSSMEIDSSYQKIEGESSTDESDSESTAYRSNRDMLLQTADEIFGDASEEYSQ LSLVKERFERWKKDYSSSYRDAYMSLSIPAIFSPYVRLELLKWDPLHVDEDFSDMKWH NLLFNYGFPEDGSFAPDDADANLVPALVEKVALPVLHHEISHCWDMLSMQETKNAVSA TSLIIDYVPASSEALAELLVTIRTRLSEAVADIMVPTWSPLVMKAVPNAARVAAYRFG MSVRLMRNICLWKEILALPILEKLALDELLYGKILPHVRNITSDVHDAVTRTERIVAS LSGVWAGTNVIQDSSRKLQPLVDYVLLLGKTLERRHASGVTESGTGGLARRLKKMLVE LNEYDSARDIARRFHLKEAL" mobile_element 17219171..17219437 /note="source:scaffold_1_CACTA_0028 11631 11898" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17219439..17220156) /note="source:CACAO_M_E4300_F2_scaffold_2 87 805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17220152..17220204) /note="source:CACAO_M_E52862_F2_scaffold_8 1 53" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17220211..17220337 /note="source:scaffold_1_CACTA_0028 12024 12152" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17220372..17220967 /note="source:CACAO_MITE_S248_scaffold_10 2 597" /mobile_element_type="transposon:TIR/MITE" gene complement(17225020..17226483) /locus_tag="TCM_044490" /note="dbxref CacaoGD:Thecc1EG044490" mRNA complement(join(17225020..17225094,17226066..17226483)) /locus_tag="TCM_044490" /product="Uncharacterized protein" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(17226113..17226313) /locus_tag="TCM_044490" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19393.1" /translation="MEKHDKPYETRDLFTIWGILQLLRFYTRKLLDLDLLFSIGDSIR IRKGNYQRPNATSPLPLVHYCG" mobile_element complement(17229092..17231084) /note="source:scaffold_9_CACTA_0924 2423 4507" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17233369..17235093) /note="source:scaffold_9_CACTA_0924 4471 6153" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17236537..17236659) /note="source:scaffold_2_CACTA_0277 3874 4003" /mobile_element_type="transposon:TIR/CACTA" gene 17236998..17238271 /locus_tag="TCM_044491" /note="dbxref CacaoGD:Thecc1EG044491" mRNA 17236998..17238271 /locus_tag="TCM_044491" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.31 coverage" CDS 17237378..17237611 /locus_tag="TCM_044491" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19394.1" /translation="MEFVQNFYNTGCLGFEVNESFITLIPKKKNPTSIGDYRLINLVG SIYKLIAKLLVNRLRKVIGEVVEAHQFAFISGR" gene 17238328..17241651 /locus_tag="TCM_044492" /note="dbxref CacaoGD:Thecc1EG044492" mRNA join(17238328..17238741,17239484..17239618, 17240178..17240301,17240411..17240501,17241182..17241651) /locus_tag="TCM_044492" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage" CDS join(17238345..17238741,17239484..17239618, 17240178..17240301,17240411..17240501,17241182..17241196) /locus_tag="TCM_044492" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19395.1" /translation="MSLFKISHGIPDEIKKLQRCFLWGGANNNRGMHFIRWDIVWHEK KNEGLGLVDLETKNRSLLTKWIWRYGNEREHIWRKIVTAKNDYDPHALLPKATVSRNC SKVWKYIISPLISTDKFFLQVKANLGVTIKESQEYIFRNPNLVSIVSKSKLVKGITLW EAPLLGWVKFNVDGASTVGDDWWVVFSHWIDVAVMAVRMFGGVYWPQDNAINNSGREL RSDMRLSFKQGFIAVFGPNMQIIFPSWLLRKVMVH" mobile_element complement(17240711..17240908) /note="source:scaffold_2_CACTA_0277 3622 3874" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17240911..17241127) /note="source:scaffold_2_CACTA_0277 3814 4022" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17242254..17242436) /note="source:scaffold_2_CACTA_0277 3796 3977" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17242596..17242671) /note="source:scaffold_2_CACTA_0277 3651 3726" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17242696..17242891) /note="source:scaffold_2_CACTA_0277 3857 4033" /mobile_element_type="transposon:TIR/CACTA" gene complement(17243035..17244171) /locus_tag="TCM_044493" /note="dbxref CacaoGD:Thecc1EG044493" mRNA complement(join(17243035..17243406,17243749..17244171)) /locus_tag="TCM_044493" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(join(17243151..17243406,17243749..17244008)) /locus_tag="TCM_044493" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19396.1" /translation="MGLSLMANPTVTGYLVGKLSTKYSIGIFIGKGSDLSAKFLVNNE NFSLIISDKVNPLTIPLVCYQWIVDGVGILHDDVCRRWLGIHRNSDYSDEENLEVPEG NNLAAMNSNKLLSLPTNVIKVSKLLTNCQYPLGLDVRGRGGHATTIPQVDSEVLVGAS NLKVGTLEPNP" gene 17247506..17248720 /locus_tag="TCM_044494" /note="dbxref CacaoGD:Thecc1EG044494" mRNA join(17247506..17248095,17248192..17248720) /locus_tag="TCM_044494" /product="Phosphatase 2c-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006990t1" /inference="similar to AA sequence:ricco:30158.m000505" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(17247761..17248095,17248192..17248441) /locus_tag="TCM_044494" /note="dbxref ricco:30158.m000505; paralog of Thecc1EG006990t1" /codon_start=1 /product="Phosphatase 2c-like protein" /protein_id="EOY19397.1" /db_xref="TAIR:AT4G16580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SG89" /translation="MKLGACYVAKDNELKPLREDAYFICNKEQTLDVVDGVGGWAAKG GDVGEYARQLMANVIIAVHEEYMLKRSVDLRRVLHETYFHTKVEGSLTSCILTFKASL LHAVNVRDNGDRPDMAMELVVRVEAGDIVVLGIDGLLDNMYPTKMEEILKRETKGQAG SVCLKKVAQQGMRCTTRLTSLHSLHSLKLQKRQD" gene 17249056..17265266 /locus_tag="TCM_044495" /note="dbxref CacaoGD:Thecc1EG044495" mRNA join(17249056..17249577,17249708..17249862, 17249983..17250070,17250174..17250410,17250870..17250965, 17252516..17252704,17252834..17252993,17253082..17253212, 17253970..17254140,17255382..17255654,17257689..17257883, 17258319..17258522,17259102..17259171,17259585..17259733, 17261125..17261433,17261522..17261581,17262558..17262710, 17262802..17262912,17263884..17265266) /locus_tag="TCM_044495" /product="DEA(D/H)-box RNA helicase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g24630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012528t1" /inference="similar to AA sequence:ricco:29852.m002018" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17169t1" mRNA join(17249149..17249577,17249708..17249862, 17249983..17250070,17250174..17250410,17250870..17250965, 17252516..17252704,17252834..17252993,17253082..17253212, 17253970..17254140,17255382..17255654,17257689..17257883, 17258319..17258522,17259102..17259171,17259585..17259733, 17261125..17261433,17261522..17261581,17262558..17262730, 17263795..17265225) /locus_tag="TCM_044495" /product="DEA(D/H)-box RNA helicase family protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene29220" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g24630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012528t1" /inference="similar to AA sequence:ricco:29852.m002018" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8554t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17169t1" mRNA join(17249149..17249577,17249708..17249862, 17249983..17250070,17250174..17250410,17250870..17250965, 17252516..17252704,17252834..17252993,17253082..17253212, 17253970..17254140,17255382..17255654,17257689..17257883, 17258319..17258522,17259102..17259171,17259585..17259733, 17261125..17261433,17261522..17261581,17262558..17262710, 17262802..17262912,17263722..17263775,17263884..17265225) /locus_tag="TCM_044495" /product="DEA(D/H)-box RNA helicase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene29220" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g24630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012528t1" /inference="similar to AA sequence:ricco:29852.m002018" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc351t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17169t1" mRNA join(17249149..17249577,17249708..17249862, 17249983..17250070,17250174..17250410,17250870..17250965, 17252516..17252704,17252834..17252993,17253082..17253212, 17253970..17254140,17255382..17255654,17257689..17257883, 17258319..17258522,17259102..17259171,17259585..17259733, 17261125..17261433,17261522..17261581,17262558..17262704, 17262802..17262912,17263884..17265225) /locus_tag="TCM_044495" /product="DEA(D/H)-box RNA helicase family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene29220" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g24630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012528t1" /inference="similar to AA sequence:ricco:29852.m002018" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc351t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17169t1" CDS join(17249362..17249577,17249708..17249862, 17249983..17250070,17250174..17250410,17250870..17250965, 17252516..17252704,17252834..17252993,17253082..17253212, 17253970..17254140,17255382..17255654,17257689..17257883, 17258319..17258522,17259102..17259171,17259585..17259733, 17261125..17261433,17261522..17261581,17262558..17262710, 17262802..17262912,17263884..17264345) /locus_tag="TCM_044495" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29852.m002018; paralog of Thecc1EG012528t1" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 1" /protein_id="EOY19398.1" /db_xref="TAIR:AT5G04895.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10CV6" /translation="MQNPKLRGLLLGFNFTHARANTLFDSLLFLLPSSSSSSSNARFC HPKRRRFCGYAAEQFSDDEYECDFESHKASSSVANIDEWKWKLSMLLRSENDQEIVSR DKRDRRDYEQISNLANRMGLYSEMYGKVVVASKVPLPNYRPDLDDKRPQREVVVPLGL QRRVEGLLQEYLDRLQLNSGNVRDNSDNANSIDQAEYVNPDENPDYFLDNSVMEKVLQ RRSLRLRNMQRAWQESPEGKKMMEFRKSLPAFKEKERLLQAIARNQVIVISGETGCGK TTQLPQYILESEIETGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGYKVRL EGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLP RRRDLRLILMSATLNAELFSNYFGGAPKIHIPGFTYPVRAHFLEDVLEFTGYKLTSFN QIDDYGQDKMWKMQRQLAPRKRKNQITALVEDALNKSSFENYSSRARDSLACWMPDCI GFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGS MATSEQKLIFEKSPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPC LLPSWISQASARQRRGRAGRVQPGECYHLYPRCVYEAFSEYQLPELLRTPLNSLCLQI KSLQVESIGEFLSAALQAPEPLAVQNAVGFLKMIGALDEKENLTSLGKFLSMLPVDPK LGKMLIMGAIFCCFDPVLTIVSGLSVKDPFLLPQDKKDLAGTAKSRFSAKDYSDHMAL VRAYEGWKDAEREGSVYEYCWRNFLSAQTLQAIHSLRKQFSFILREAGLVDTDAGSNN KLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYP WLVFGEKVKVNTVFIRDSTGVSDSMLMLFGGALSCGVQAGHLKMMQGYIDFFMDSSLA ECYLKLKEELDRLIQKKLQDPSVDIHKEGKYLMLAVQELVSGDLCEGRFVFGRESKKP KDSTDNSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGK PKKNKQLAERDAAIEALAWLTHTSDNNQDEDDSPLDVTDNMLKLLGKRRRSKRR" CDS join(17249362..17249577,17249708..17249862, 17249983..17250070,17250174..17250410,17250870..17250965, 17252516..17252704,17252834..17252993,17253082..17253212, 17253970..17254140,17255382..17255654,17257689..17257883, 17258319..17258522,17259102..17259171,17259585..17259733, 17261125..17261433,17261522..17261581,17262558..17262704, 17262802..17262912,17263884..17264345) /locus_tag="TCM_044495" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29852.m002018; paralog of Thecc1EG012528t1" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 3" /protein_id="EOY19400.1" /db_xref="TAIR:AT5G04895.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10CV6" /translation="MQNPKLRGLLLGFNFTHARANTLFDSLLFLLPSSSSSSSNARFC HPKRRRFCGYAAEQFSDDEYECDFESHKASSSVANIDEWKWKLSMLLRSENDQEIVSR DKRDRRDYEQISNLANRMGLYSEMYGKVVVASKVPLPNYRPDLDDKRPQREVVVPLGL QRRVEGLLQEYLDRLQLNSGNVRDNSDNANSIDQAEYVNPDENPDYFLDNSVMEKVLQ RRSLRLRNMQRAWQESPEGKKMMEFRKSLPAFKEKERLLQAIARNQVIVISGETGCGK TTQLPQYILESEIETGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGYKVRL EGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLP RRRDLRLILMSATLNAELFSNYFGGAPKIHIPGFTYPVRAHFLEDVLEFTGYKLTSFN QIDDYGQDKMWKMQRQLAPRKRKNQITALVEDALNKSSFENYSSRARDSLACWMPDCI GFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGS MATSEQKLIFEKSPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPC LLPSWISQASARQRRGRAGRVQPGECYHLYPRCVYEAFSEYQLPELLRTPLNSLCLQI KSLQVESIGEFLSAALQAPEPLAVQNAVGFLKMIGALDEKENLTSLGKFLSMLPVDPK LGKMLIMGAIFCCFDPVLTIVSGLSVKDPFLLPQDKKDLAGTAKSRFSAKDYSDHMAL VRAYEGWKDAEREGSVYEYCWRNFLSAQTLQAIHSLRKQFSFILREAGLVDTDAGSNN KLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYP WLVFGEKVKVNTVFIRDSTGVSDSMLMLFGGALSCGAGHLKMMQGYIDFFMDSSLAEC YLKLKEELDRLIQKKLQDPSVDIHKEGKYLMLAVQELVSGDLCEGRFVFGRESKKPKD STDNSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPK KNKQLAERDAAIEALAWLTHTSDNNQDEDDSPLDVTDNMLKLLGKRRRSKRR" CDS join(17249362..17249577,17249708..17249862, 17249983..17250070,17250174..17250410,17250870..17250965, 17252516..17252704,17252834..17252993,17253082..17253212, 17253970..17254140,17255382..17255654,17257689..17257883, 17258319..17258522,17259102..17259171,17259585..17259733, 17261125..17261433,17261522..17261581,17262558..17262730, 17263795..17263807) /locus_tag="TCM_044495" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29852.m002018; paralog of Thecc1EG012528t1" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 4" /protein_id="EOY19401.1" /db_xref="TAIR:AT5G04895.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10CV6" /translation="MQNPKLRGLLLGFNFTHARANTLFDSLLFLLPSSSSSSSNARFC HPKRRRFCGYAAEQFSDDEYECDFESHKASSSVANIDEWKWKLSMLLRSENDQEIVSR DKRDRRDYEQISNLANRMGLYSEMYGKVVVASKVPLPNYRPDLDDKRPQREVVVPLGL QRRVEGLLQEYLDRLQLNSGNVRDNSDNANSIDQAEYVNPDENPDYFLDNSVMEKVLQ RRSLRLRNMQRAWQESPEGKKMMEFRKSLPAFKEKERLLQAIARNQVIVISGETGCGK TTQLPQYILESEIETGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGYKVRL EGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLP RRRDLRLILMSATLNAELFSNYFGGAPKIHIPGFTYPVRAHFLEDVLEFTGYKLTSFN QIDDYGQDKMWKMQRQLAPRKRKNQITALVEDALNKSSFENYSSRARDSLACWMPDCI GFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGS MATSEQKLIFEKSPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPC LLPSWISQASARQRRGRAGRVQPGECYHLYPRCVYEAFSEYQLPELLRTPLNSLCLQI KSLQVESIGEFLSAALQAPEPLAVQNAVGFLKMIGALDEKENLTSLGKFLSMLPVDPK LGKMLIMGAIFCCFDPVLTIVSGLSVKDPFLLPQDKKDLAGTAKSRFSAKDYSDHMAL VRAYEGWKDAEREGSVYEYCWRNFLSAQTLQAIHSLRKQFSFILREAGLVDTDAGSNN KLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYP WLVFGEKVKVNTVFIRDSTGVSDSMLMLFGGALSCGVQVISFVDDLLN" CDS join(17249362..17249577,17249708..17249862, 17249983..17250070,17250174..17250410,17250870..17250965, 17252516..17252704,17252834..17252993,17253082..17253212, 17253970..17254140,17255382..17255654,17257689..17257883, 17258319..17258522,17259102..17259171,17259585..17259733, 17261125..17261433,17261522..17261581,17262558..17262710, 17262802..17262912,17263722..17263727) /locus_tag="TCM_044495" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29852.m002018; paralog of Thecc1EG012528t1" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein isoform 2" /protein_id="EOY19399.1" /db_xref="TAIR:AT5G04895.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10CV6" /translation="MQNPKLRGLLLGFNFTHARANTLFDSLLFLLPSSSSSSSNARFC HPKRRRFCGYAAEQFSDDEYECDFESHKASSSVANIDEWKWKLSMLLRSENDQEIVSR DKRDRRDYEQISNLANRMGLYSEMYGKVVVASKVPLPNYRPDLDDKRPQREVVVPLGL QRRVEGLLQEYLDRLQLNSGNVRDNSDNANSIDQAEYVNPDENPDYFLDNSVMEKVLQ RRSLRLRNMQRAWQESPEGKKMMEFRKSLPAFKEKERLLQAIARNQVIVISGETGCGK TTQLPQYILESEIETGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGYKVRL EGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLP RRRDLRLILMSATLNAELFSNYFGGAPKIHIPGFTYPVRAHFLEDVLEFTGYKLTSFN QIDDYGQDKMWKMQRQLAPRKRKNQITALVEDALNKSSFENYSSRARDSLACWMPDCI GFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGS MATSEQKLIFEKSPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPC LLPSWISQASARQRRGRAGRVQPGECYHLYPRCVYEAFSEYQLPELLRTPLNSLCLQI KSLQVESIGEFLSAALQAPEPLAVQNAVGFLKMIGALDEKENLTSLGKFLSMLPVDPK LGKMLIMGAIFCCFDPVLTIVSGLSVKDPFLLPQDKKDLAGTAKSRFSAKDYSDHMAL VRAYEGWKDAEREGSVYEYCWRNFLSAQTLQAIHSLRKQFSFILREAGLVDTDAGSNN KLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYP WLVFGEKVKVNTVFIRDSTGVSDSMLMLFGGALSCGVQAGHLKMMQGYIDFFMDSSLA ECYLKLKEELDRLIQKKD" gene 17265872..17266443 /locus_tag="TCM_044496" /note="dbxref CacaoGD:Thecc1EG044496" mRNA 17265872..17266443 /locus_tag="TCM_044496" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044499t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage" CDS 17265922..17266281 /locus_tag="TCM_044496" /note="paralog of Thecc1EG044499t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19402.1" /translation="MASFKVLGLMMILFVTSGVVMSIEEVVDPIQAYNCETKMSLNCV MEVFESICNKAKSVTDKCCGELMVLGQVCHNALLKRTLQLPKFKNVDASILLKRSIQT WNKCAFVVDGVAPSPSL" mobile_element complement(17267964..17269489) /note="source:CACAO_M_E44269_F17_scaffold_6 1 1527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17269542..17272799) /note="source:scaffold_4_CACTA_0497 2481 5633" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17272979..17272996) /note="source:CACAO_on_E683_scaffold_9 1563 1621" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 17272997..17273054 /note="source:INTACT639F_F363_scaffold_5-int 8147 8206" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17273055..17273085) /note="source:CACAO_on_E683_scaffold_9 1451 1562" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 17275118..17275586 /note="source:CACAO_M_E70016_F74_scaffold_10 1 471" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17276536..17277058 /locus_tag="TCM_044499" /note="dbxref CacaoGD:Thecc1EG044499" mRNA 17276536..17277058 /locus_tag="TCM_044499" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044496t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS 17276591..17276947 /locus_tag="TCM_044499" /note="paralog of Thecc1EG044496t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19403.1" /translation="MASFNVLSLLVVLFVTSGAVMSIEVADPIQAYNCESKMSLNCVM GVFASIFNNTEMVTDKCCGELIVLGQVCHNALFKRTLQLPKFRKIDSSLILKRSIRTW NKCALLIDSIAQSPYP" mobile_element complement(17277863..17277972) /note="source:INTACT687_F13_scaffold_3-int 1943 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17277907..17278150) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17611 17843" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17278193..17278274) /note="source:scaffold_1_CACTA_0008 932 1363" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17278275..17278604) /note="source:INTACT687_F13_scaffold_3-int 1299 1642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17281555..17281618 /note="source:scaffold_1_CACTA_0005 6292 6355" /mobile_element_type="transposon:TIR/CACTA" gene 17282643..17290037 /locus_tag="TCM_044500" /note="dbxref CacaoGD:Thecc1EG044500" mRNA join(17282643..17282992,17283494..17285017, 17285120..17285426,17286149..17286857,17286949..17287072, 17287204..17287423,17287855..17288313,17288834..17290037) /locus_tag="TCM_044500" /product="Aminophospholipid ATPase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047853" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019687t6" /inference="similar to AA sequence:ricco:29852.m002012" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc548t8" mRNA join(17282710..17283396,17283481..17285017, 17285120..17285426,17286149..17286857,17286949..17287072, 17287204..17287423,17287855..17288313,17288961..17289347) /locus_tag="TCM_044500" /product="Aminophospholipid ATPase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047853" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019687t6" /inference="similar to AA sequence:ricco:29852.m002012" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc546t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc548t8" CDS join(17282893..17282992,17283494..17285017, 17285120..17285426,17286149..17286857,17286949..17287072, 17287204..17287423,17287855..17288313,17288834..17289053) /locus_tag="TCM_044500" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29852.m002012; paralog of Thecc1EG019687t6" /codon_start=1 /product="Aminophospholipid ATPase isoform 1" /protein_id="EOY19404.1" /db_xref="TAIR:AT5G04930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKJ9" /translation="MPLTLDISLSQTRHCNNRKENPPIAIIPTSSFPWDPGFVFGMDS KTPVENLYSIEPALSSSSRRSNFSIQSKASGGNSIREVTFTDLGSKPVRYGSHGADSE TNALSQKEINDEDARLVHINDPVKTNERFEFAGNSIRTAKYSILTFVPRNLFEQFHRV AYIYFLVIAVLNQLPQLAVFGRGASILPLAIVLLVTAVKDAYEDYRRHRSDRIENNRL ASVLVNYQFQQKKWKNIQVGEIIKLHANETIPCDIVLLSTSDPTGVAYVQTINLDGES NLKTRYAKQETLTKIPEEGKITGLIKCEKPNRNIYGFQANMEIDGKRLSLGPSNIILR GCELKNTAWAVGVAVYAGRETKVMLNSSGAPSKRSRLETHMNLEIIILSLFLIALCTV VSVCAAVWLRRHRDELDFLPFYRRKDFSDGEEDDYNYYGWGMEIFFTFLMSVIVFQIM IPISLYISMELVRVGQAYFMIRDTQMYDESSNSRFQCRALNINEDLGQIKYVFSDKTG TLTENKMEFQCASIWGVDYNGGKASSVDGYYVQVDGKVLRPKMKVKTDPELLQFARSG KETKEGSHVYDFFLALAACNTIVPLIIDTSDPTVKLIDYQGESPDEQALVYAAAAYGF MLIERTSGHIVIDIQGERQRFNVLGLHEFDSDRKRMSVILGFPDKSVKLFVKGADTSM FSVIERSLNVNIIRTTEAHLHSYSSSGLRTLVVGMRELSTSEFEVWHSAFETASTALM GRASLLRKVASNIENNLCVLGASGIEDKLQKGVPEAIESLRTAGIKVWVLTGDKQETA ISIGYSSKLLTSKMTQFIINSNSKESCRKSLEDAIIMSKKLMTISDTANNAGGTSGAG LTPVALIIDGTSLVYILDSELEETLFQLACNCSVVLCCRVAPLQKAGIVALVKNRTSD MTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVSLLLVHGHWNY QRMGYMILYNFYRNAVFVLLLFWYVLFTCFTLTTAITEWSSVLYSVIYTSVPTIVVGI LDKDLSRRTLLKDPQLYGAGHRQECYNKRLFWITMIDTFWQSAVVFFIPLLAYWGSTI DGSSIGDLWTIAVVILVNLHLAMDVIRWNWITHAAIWGSIIATCICVIIIDALPSLVG YWAIFKIARTGLFWLCLLAIIVVALVPRFVVKVLYQLYTPCDVQIAREAEKFQSQRAT GALEVEMNPILDPPRR" CDS join(17283517..17285017,17285120..17285426, 17286149..17286857,17286949..17287072,17287204..17287423, 17287855..17288313,17288961) /locus_tag="TCM_044500" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29852.m002012; paralog of Thecc1EG019687t6" /codon_start=1 /product="Aminophospholipid ATPase isoform 2" /protein_id="EOY19405.1" /db_xref="TAIR:AT5G04930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKJ9" /translation="MDSKTPVENLYSIEPALSSSSRRSNFSIQSKASGGNSIREVTFT DLGSKPVRYGSHGADSETNALSQKEINDEDARLVHINDPVKTNERFEFAGNSIRTAKY SILTFVPRNLFEQFHRVAYIYFLVIAVLNQLPQLAVFGRGASILPLAIVLLVTAVKDA YEDYRRHRSDRIENNRLASVLVNYQFQQKKWKNIQVGEIIKLHANETIPCDIVLLSTS DPTGVAYVQTINLDGESNLKTRYAKQETLTKIPEEGKITGLIKCEKPNRNIYGFQANM EIDGKRLSLGPSNIILRGCELKNTAWAVGVAVYAGRETKVMLNSSGAPSKRSRLETHM NLEIIILSLFLIALCTVVSVCAAVWLRRHRDELDFLPFYRRKDFSDGEEDDYNYYGWG MEIFFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDTQMYDESSNSRFQCRALN INEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYNGGKASSVDGYYVQVDGKVLRP KMKVKTDPELLQFARSGKETKEGSHVYDFFLALAACNTIVPLIIDTSDPTVKLIDYQG ESPDEQALVYAAAAYGFMLIERTSGHIVIDIQGERQRFNVLGLHEFDSDRKRMSVILG FPDKSVKLFVKGADTSMFSVIERSLNVNIIRTTEAHLHSYSSSGLRTLVVGMRELSTS EFEVWHSAFETASTALMGRASLLRKVASNIENNLCVLGASGIEDKLQKGVPEAIESLR TAGIKVWVLTGDKQETAISIGYSSKLLTSKMTQFIINSNSKESCRKSLEDAIIMSKKL MTISDTANNAGGTSGAGLTPVALIIDGTSLVYILDSELEETLFQLACNCSVVLCCRVA PLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMG QFRFLVSLLLVHGHWNYQRMGYMILYNFYRNAVFVLLLFWYVLFTCFTLTTAITEWSS VLYSVIYTSVPTIVVGILDKDLSRRTLLKDPQLYGAGHRQECYNKRLFWITMIDTFWQ SAVVFFIPLLAYWGSTIDGSSIGDLWTIAVVILVNLHLAMDVIRWNWITHAAIWGSII ATCICVIIIDALPSLVGY" mRNA join(17283973..17285017,17285120..17285426, 17286149..17286857,17286949..17287075,17287204..17287423, 17287855..17288314,17288834..17289336) /locus_tag="TCM_044500" /product="Aminophospholipid ATPase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047853" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019687t6" /inference="similar to AA sequence:ricco:29852.m002012" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4830t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc548t8" CDS join(17284342..17285017,17285120..17285426, 17286149..17286857,17286949..17287075,17287204..17287423, 17287855..17288314,17288834..17288845) /locus_tag="TCM_044500" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29852.m002012; paralog of Thecc1EG019687t6" /codon_start=1 /product="Aminophospholipid ATPase isoform 3" /protein_id="EOY19406.1" /db_xref="TAIR:AT5G04930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKJ9" /translation="MEIDGKRLSLGPSNIILRGCELKNTAWAVGVAVYAGRETKVMLN SSGAPSKRSRLETHMNLEIIILSLFLIALCTVVSVCAAVWLRRHRDELDFLPFYRRKD FSDGEEDDYNYYGWGMEIFFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDTQM YDESSNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYNGGKASS VDGYYVQVDGKVLRPKMKVKTDPELLQFARSGKETKEGSHVYDFFLALAACNTIVPLI IDTSDPTVKLIDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIQGERQRFNVLGL HEFDSDRKRMSVILGFPDKSVKLFVKGADTSMFSVIERSLNVNIIRTTEAHLHSYSSS GLRTLVVGMRELSTSEFEVWHSAFETASTALMGRASLLRKVASNIENNLCVLGASGIE DKLQKGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTSKMTQFIINSNSKES CRKSLEDAIIMSKKLMTISDTANNAGGTSGAGLTPVALIIDGTSLVYILDSELEETLF QLACNCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGGANDVSMIQMADVGVGIS GQEGRQAVMASDFAMGQFRFLVSLLLVHGHWNYQRMGYMILYNFYRNAVFVLLLFWYV LFTCFTLTTAITEWSSVLYSVIYTSVPTIVVGILDKDLSRRTLLKDPQLYGAGHRQEC YNKRLFWITMIDTFWQSAVVFFIPLLAYWGSTIDGSSIGDLWTIAVVILVNLHLAMDV IRWNWITHAAIWGSIIATCICVIIIDALPSLVGYWGHL" gene complement(17290983..17295793) /locus_tag="TCM_044501" /note="dbxref CacaoGD:Thecc1EG044501" mRNA complement(join(17290983..17292129,17292267..17292378, 17292472..17292521,17292610..17292815,17293120..17293360, 17293558..17293688,17293871..17295258)) /locus_tag="TCM_044501" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene00364" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025852t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s01490.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4613t1" CDS complement(join(17291872..17292129,17292267..17292378, 17292472..17292521,17292610..17292815,17293120..17293360, 17293558..17293688,17293871..17295203)) /locus_tag="TCM_044501" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025852t2" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY19407.1" /db_xref="Phytozome:POPTR_0008s01490.1" /db_xref="TAIR:AT3G03770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKJ7" /translation="MANPVYTLLFLLTLFHSVHLSHQLQPSQANALWEIQQLLNYPSV LSSFDNTWDFCNIEPTPSLTVVCYEDNVTQLHVIGNNGVAPLPQNFSIDAFFASLVSL SNLKVLSLVSLGLWGPLPGGIGKLSSLEILNVSSNYFTGFIPVELSYLWNLQTLFLDH NKFTGQVPGWLSSFHALTVLSLKNNSLFGTLPSAVASLENLRILSVANNHLFGEVPDL QKLTNLQVLDLENNYFGPHFPALHNKVVTLVLRNNSFQFGIPADLGSYYELQKLDISF NGFVGPFLPSLFALPSINYIDVSANKLTGRLFQNMSCNDELAFVNLSSNLLTGDLPAC LQPTFKSRAVMYARNCLSDEEQEQHPSNFCHNEALAVKVLPRKLKYKRHDAKAVLASS IVGGIAGIAVIGSLSFLVIQRRNNRVAGKTLSTRLIMEKVSTVNPVKLLSDARYISET MKLGANHPAYRVFALEELKEATNNFTPSSIIGEGSHGQVYKGKLADGTLVAIRSLKMR KKHSSQTYTHHIETISKLRHSHLASALGHCFEYCPDDSSVSIINLVFEFVPNGTLRGC ISEGLPGQRLKWTQRIAAAIGVAKGIQFLHAGILPGVFSNNLKITDVLLDQNLLAKIS SYNLPLLAENGGMGGAGVSLPGLKANVRGREIHEDKDDVYDIGVILVEILVGRPIMSQ NDVMVVKDILQVSNKMDDTARRSIVDPTIVKECSAESLKTVMEICLRCLSDEAGDRPS VEDVLWTLQFAAQLQDPWRLDSHHIHHLNISSLEKM" mRNA complement(join(17292945..17293360,17293558..17293688, 17293871..17295793)) /locus_tag="TCM_044501" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene00364" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025852t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s01490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc84t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4613t1" CDS complement(join(17293100..17293360,17293558..17293688, 17293871..17295203)) /locus_tag="TCM_044501" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025852t2" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY19408.1" /db_xref="Phytozome:POPTR_0008s01490.1" /db_xref="TAIR:AT3G03770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKJ7" /translation="MANPVYTLLFLLTLFHSVHLSHQLQPSQANALWEIQQLLNYPSV LSSFDNTWDFCNIEPTPSLTVVCYEDNVTQLHVIGNNGVAPLPQNFSIDAFFASLVSL SNLKVLSLVSLGLWGPLPGGIGKLSSLEILNVSSNYFTGFIPVELSYLWNLQTLFLDH NKFTGQVPGWLSSFHALTVLSLKNNSLFGTLPSAVASLENLRILSVANNHLFGEVPDL QKLTNLQVLDLENNYFGPHFPALHNKVVTLVLRNNSFQFGIPADLGSYYELQKLDISF NGFVGPFLPSLFALPSINYIDVSANKLTGRLFQNMSCNDELAFVNLSSNLLTGDLPAC LQPTFKSRAVMYARNCLSDEEQEQHPSNFCHNEALAVKVLPRKLKYKRHDAKAVLASS IVGGIAGIAVIGSLSFLVIQRRNNRVAGKTLSTRLIMEKVSTVNPVKLLSDARYISET MKLGANHPAYRVFALEELKEATNNFTPSSIIGEGSHGQVYKGKLADGTLVAIRSLKMR KKHSSQTYTHHIETISKLRHSHLASALGHCFEYCPDDSSVSIINLVFEFVPNGTLRGC ISGTILCY" mobile_element complement(17297350..17297480) /note="source:scaffold_7_CACTA_0795 2957 3073" /mobile_element_type="transposon:TIR/CACTA" gene 17297749..17299543 /locus_tag="TCM_044502" /note="dbxref CacaoGD:Thecc1EG044502" mRNA join(17297749..17298087,17299396..17299543) /locus_tag="TCM_044502" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1231t1" CDS join(17297891..17298087,17299396..17299483) /locus_tag="TCM_044502" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19409.1" /translation="MLLSRCETWNTKPSQAKYHGNEGKIKPRGNDPSNNNNAKALGFV PNNFLTSMHILIAVLLKPLSHGIGVQKGLMLLLATWEFFHYNASDACDFA" mobile_element 17298332..17298406 /note="source:CACAO_on_E52_scaffold_7 3323 3396" /mobile_element_type="transposon:TIR/hAT" mobile_element 17298774..17298867 /note="source:CACAO_PIF_E465_scaffold_115 6338 6431" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 17298908..17299018 /note="source:CACAO_PIF_E465_scaffold_115 6429 6540" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(17299529..17307558) /locus_tag="TCM_044503" /note="dbxref CacaoGD:Thecc1EG044503" mRNA complement(join(17299529..17299931,17300066..17300176, 17300587..17300628,17300720..17300770,17302488..17302538, 17303601..17303658,17304736..17304821,17304891..17304939, 17305031..17305098,17305866..17305952,17306076..17306137, 17306953..17307021,17307240..17307558)) /locus_tag="TCM_044503" /product="NYC1-like" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01480.2" /inference="similar to AA sequence:Phytozome:POPTR_0008s01480.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09588t00001" CDS complement(join(17299884..17299931,17300066..17300176, 17300587..17300628,17300720..17300770,17302488..17302538, 17303601..17303658,17304736..17304821,17304891..17304939, 17305031..17305098,17305866..17305952,17306076..17306137, 17306953..17307021,17307240..17307528)) /locus_tag="TCM_044503" /codon_start=1 /product="NYC1-like" /protein_id="EOY19410.1" /db_xref="Phytozome:POPTR_0008s01480.2" /db_xref="TAIR:AT5G04900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LEU3" /translation="MATIISSMATAASSTCCQFLTPVWSPGAHPVIFPPISKPTHFQP FLANASLQNSAFSPTPTTSFYSPLSVKAQAATPGETQPMLPPYNVLITGSSKGIGYAL AKEFLKAGDNVVICSRSAERVESAVKSLREEYEEQRVWGTQCDIREAQDVKNLVLFAQ KNLGDIDIWINNAGSNAYSYKPLAEASDEDLIEVVSTNTLGLMICCREAIKMMLQQPR GGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVVVHNLSPGM VTTDLLMSGATTKQAKFFINVLAEPAEVVAEYLVPNIRSIPANGSWKPTYIRFLTGLK AYSQIFSRLAFGARRNRYMLED" gene 17306911..17310769 /locus_tag="TCM_044504" /note="dbxref CacaoGD:Thecc1EG044504" mRNA join(17306911..17307637,17307733..17309424, 17310426..17310769) /locus_tag="TCM_044504" /product="Tetratricopeptide repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s06780.1" /inference="similar to AA sequence:ricco:30128.m008958" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc339t6" CDS join(17307422..17307637,17307733..17309355) /locus_tag="TCM_044504" /note="dbxref ricco:30128.m008958" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY19411.1" /db_xref="TAIR:AT3G49730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H4B8" /translation="MGGKITGWAPGDQTGVKNWQQVEEAAVAIEEIIVAIEAASKLQT AQTVSRCGYSLWLRYYPRGMMLRLFTCQLKGCWLEVGSKMAFRLCGTRTLPTAISLRF LPLSSLCFLSSPSLNLPKLQPSEEADSLSQLLLAHHNPFHSMESSIQLHGISLSPFLL DQILLRLQHSSKIALSFFLYSKSLPPSPSSLLSTTSYNLIIDVLAKVRQFDVVWQLIL EMDQTNIPPDSSTFMILIRRLIAAGLTRQAIRSFDDMGCFVTADNETDTDSSCQNSSF CFCFLLDTLCKYGYVKVAVEIFNKRKSGFRVDSKMYTILISGWCKIGRIDMAERFLKE MIEKGMEPNVVTYNVMLNGICRRVSLHPDDRFDRAIRNAEKLFDEMRQRGIEPDVTSF SIVLHVYSRAHKPELTLDKLKIMKEKGICPSVATYTSVIKCLCSCGRLEEAEKLLGEM VSNGVSPSAATYNCFFKEYRGRKNVNGALNLYRKMKEDRLCELSLHTYNILLGMCMKL DRIELAEEIWNDLKGSTAGPDLDSYTLLINGLCGKQKWREACQLFVEMIEKGLLPQKV TFERLYKGLIQSNMLRTWRRLKKKLDEESLIFGSEFQDYHLKPYRR" gene complement(17310155..17320762) /locus_tag="TCM_044506" /note="dbxref CacaoGD:Thecc1EG044506" mRNA complement(join(17310155..17310409,17312223..17313174, 17313431..17313604,17313712..17313857,17314484..17314582, 17314756..17314827,17314906..17314962,17315044..17315235, 17315423..17315517,17315604..17315703,17315801..17315953, 17316039..17317091,17317502..17317612,17317718..17317880, 17318208..17318305,17318519..17318948)) /locus_tag="TCM_044506" /product="Spc97 / Spc98 family of spindle pole body component isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g03980.1" /inference="similar to AA sequence:frave:gene15042" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc569t8; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc569t9" mobile_element 17311035..17312166 /note="source:scaffold_10_CACTA_0130 11084 12256" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(17312027..17313174,17313431..17313604, 17313712..17313843,17314484..17314582,17314756..17314827, 17314906..17314962,17315044..17315235,17315423..17315517, 17315604..17315703,17315801..17315953,17316039..17317091, 17317502..17317612,17317718..17317880,17318208..17318305, 17318519..17319121,17320549..17320762)) /locus_tag="TCM_044506" /product="Spc97 / Spc98 family of spindle pole body component isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g03980.1" /inference="similar to AA sequence:frave:gene15042" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc569t9" mRNA complement(join(17312237..17313174,17313431..17313604, 17313712..17313843,17314484..17314582,17314756..17314827, 17314906..17314962,17315044..17315235,17315423..17315517, 17315604..17315703,17315801..17315953,17316039..17317091, 17317502..17317612,17317718..17317880,17318208..17318544)) /locus_tag="TCM_044506" /product="Spc97 / Spc98 family of spindle pole body (SBP) component, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g03980.1" /inference="similar to AA sequence:Phytozome:Glyma06g03980.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc560t9; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc569t9" mRNA complement(join(17312719..17313174,17313431..17313604, 17313712..17313843,17314484..17314582,17314756..17314827, 17314906..17314962,17315044..17315235,17315423..17315517, 17315604..17315703,17315801..17315953,17316039..17317091, 17317502..17317612,17317718..17317869,17318208..17318544)) /locus_tag="TCM_044506" /product="Spc97 / Spc98 family of spindle pole body (SBP) component, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g03980.1" /inference="similar to AA sequence:ricco:27451.m000249" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc560t2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc569t9" CDS complement(join(17313013..17313174,17313431..17313604, 17313712..17313843,17314484..17314582,17314756..17314827, 17314906..17314962,17315044..17315235,17315423..17315517, 17315604..17315703,17315801..17315953,17316039..17317091, 17317502..17317612,17317718..17317880,17318208..17318305, 17318519..17318920)) /locus_tag="TCM_044506" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene15042" /codon_start=1 /product="Spc97 / Spc98 family of spindle pole body component isoform 1" /protein_id="EOY19412.1" /db_xref="TAIR:AT1G80260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KJ30" /translation="MKTTSLISSNPDASQSLINKIYGVFSDNDVQFSSPISSARTTEM ELVRGVVRMLQGFSGSLFSWDQKGRRFCVKNGIYVTHLSQLSLGAILNQFMYAATCLE LVQIAVSKVETQLRSPPPTLRAFASSVSSWLKRLRDIALKEEKKISNSNGETMLTLLG LTSSLSSLCSGAEYLLQIVHEAIPQACFEPTSCIPSAEIAIHILDHLYLKLGEACLVQ GGEGDVYQMLVHIFVGTLLPYIEGLDSWLFEGTLDDPFEEMFFYANRAISVDEAEFWE KSYLLRVVQNCKLKVDPSAPTDTNDYVPGTCNKKETAEKEFVSTSSSMKGKEQNNRDL LVCPLFIKDIAKSIVSAGKSLQLIRHVPMTSTLPSSKNNDKCNDGFESYHDDCDINKM NHWQCMTGLALAEIFCVSLAGLLGHGDHISQYFCQGDQSKAGIISSLFSYVKEQIMEY GTAEPLPPSTYSEKIWYNFLVDSLLKKKSIDVEPADKDSCCFPDTKAKNMVIGVENKF SLQQSFCPENLVLTVCQTFLDKNRNSWKALNLSEKFYLPPLNDEYLRKAVFGEKSELV SGPHGTNYTLGFQFGESDHLRAQHDTKLLEVLFPFPTLLPSLQDDIHMSELLPFQKNS TLLSRVLSWIQTFQPRTTPLPMVIMQECLTVYIKKQVDYIGSLILSKLMNGWRLMDEL AVLRAIYLLGSGDLLQHFLTVIFNKLDKGETWDDDFELNTILQESIRNSADGLLLSAP DSLVVSISKTHGIDGDEQTNTANVASALHKSRPHSYGIDGLDSVKFIYKVSWPLELIA NSEAIKKYNQVMAFLLKVKRAKFALDKARRWMWKDKGTVRNNRKRHWLVEQKLLHFVD AFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIHRQCFVAPDKLWALIA SRINSILGLALDFYSIQQTLSSGGTVSAIKARCEMEVDRIEKQFDDCIAFLLRVLSFK LNVGHFPHLADLVARINYNNFYMSDGGNLMTTPSSESATARLGKAFAN" CDS complement(join(17313013..17313174,17313431..17313604, 17313712..17313843,17314484..17314582,17314756..17314827, 17314906..17314962,17315044..17315235,17315423..17315517, 17315604..17315703,17315801..17315953,17316039..17317091, 17317502..17317612,17317718..17317880,17318208..17318245)) /locus_tag="TCM_044506" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Spc97 / Spc98 family of spindle pole body (SBP) component, putative isoform 3" /protein_id="EOY19414.1" /db_xref="Phytozome:Glyma06g03980.1" /db_xref="TAIR:AT1G80260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KJ30" /translation="MLTLLGLTSSLSSLCSGAEYLLQIVHEAIPQACFEPTSCIPSAE IAIHILDHLYLKLGEACLVQGGEGDVYQMLVHIFVGTLLPYIEGLDSWLFEGTLDDPF EEMFFYANRAISVDEAEFWEKSYLLRVVQNCKLKVDPSAPTDTNDYVPGTCNKKETAE KEFVSTSSSMKGKEQNNRDLLVCPLFIKDIAKSIVSAGKSLQLIRHVPMTSTLPSSKN NDKCNDGFESYHDDCDINKMNHWQCMTGLALAEIFCVSLAGLLGHGDHISQYFCQGDQ SKAGIISSLFSYVKEQIMEYGTAEPLPPSTYSEKIWYNFLVDSLLKKKSIDVEPADKD SCCFPDTKAKNMVIGVENKFSLQQSFCPENLVLTVCQTFLDKNRNSWKALNLSEKFYL PPLNDEYLRKAVFGEKSELVSGPHGTNYTLGFQFGESDHLRAQHDTKLLEVLFPFPTL LPSLQDDIHMSELLPFQKNSTLLSRVLSWIQTFQPRTTPLPMVIMQECLTVYIKKQVD YIGSLILSKLMNGWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGETWDDDFEL NTILQESIRNSADGLLLSAPDSLVVSISKTHGIDGDEQTNTANVASALHKSRPHSYGI DGLDSVKFIYKVSWPLELIANSEAIKKYNQVMAFLLKVKRAKFALDKARRWMWKDKGT VRNNRKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAY LLSIHRQCFVAPDKLWALIASRINSILGLALDFYSIQQTLSSGGTVSAIKARCEMEVD RIEKQFDDCIAFLLRVLSFKLNVGHFPHLADLVARINYNNFYMSDGGNLMTTPSSESA TARLGKAFAN" CDS complement(join(17313013..17313174,17313431..17313604, 17313712..17313843,17314484..17314582,17314756..17314827, 17314906..17314962,17315044..17315235,17315423..17315517, 17315604..17315703,17315801..17315953,17316039..17317091, 17317502..17317597)) /locus_tag="TCM_044506" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:27451.m000249" /codon_start=1 /product="Spc97 / Spc98 family of spindle pole body (SBP) component, putative isoform 4" /protein_id="EOY19415.1" /db_xref="TAIR:AT1G80260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KJ30" /translation="MLVHIFVGTLLPYIEGLDSWLFEGTLDDPFEEMFFYANRAISVD EAEFWEKSYLLRVVQNCKLKVDPSAPTDTNDYVPGTCNKKETAEKEFVSTSSSMKGKE QNNRDLLVCPLFIKDIAKSIVSAGKSLQLIRHVPMTSTLPSSKNNDKCNDGFESYHDD CDINKMNHWQCMTGLALAEIFCVSLAGLLGHGDHISQYFCQGDQSKAGIISSLFSYVK EQIMEYGTAEPLPPSTYSEKIWYNFLVDSLLKKKSIDVEPADKDSCCFPDTKAKNMVI GVENKFSLQQSFCPENLVLTVCQTFLDKNRNSWKALNLSEKFYLPPLNDEYLRKAVFG EKSELVSGPHGTNYTLGFQFGESDHLRAQHDTKLLEVLFPFPTLLPSLQDDIHMSELL PFQKNSTLLSRVLSWIQTFQPRTTPLPMVIMQECLTVYIKKQVDYIGSLILSKLMNGW RLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGETWDDDFELNTILQESIRNSADG LLLSAPDSLVVSISKTHGIDGDEQTNTANVASALHKSRPHSYGIDGLDSVKFIYKVSW PLELIANSEAIKKYNQVMAFLLKVKRAKFALDKARRWMWKDKGTVRNNRKRHWLVEQK LLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIHRQCFVAPDK LWALIASRINSILGLALDFYSIQQTLSSGGTVSAIKARCEMEVDRIEKQFDDCIAFLL RVLSFKLNVGHFPHLADLVARINYNNFYMSDGGNLMTTPSSESATARLGKAFAN" CDS complement(join(17313774..17313857,17314484..17314582, 17314756..17314827,17314906..17314962,17315044..17315235, 17315423..17315517,17315604..17315703,17315801..17315953, 17316039..17317091,17317502..17317612,17317718..17317880, 17318208..17318305,17318519..17318920)) /locus_tag="TCM_044506" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene15042" /codon_start=1 /product="Spc97 / Spc98 family of spindle pole body component isoform 2" /protein_id="EOY19413.1" /db_xref="TAIR:AT1G80260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KJ30" /translation="MKTTSLISSNPDASQSLINKIYGVFSDNDVQFSSPISSARTTEM ELVRGVVRMLQGFSGSLFSWDQKGRRFCVKNGIYVTHLSQLSLGAILNQFMYAATCLE LVQIAVSKVETQLRSPPPTLRAFASSVSSWLKRLRDIALKEEKKISNSNGETMLTLLG LTSSLSSLCSGAEYLLQIVHEAIPQACFEPTSCIPSAEIAIHILDHLYLKLGEACLVQ GGEGDVYQMLVHIFVGTLLPYIEGLDSWLFEGTLDDPFEEMFFYANRAISVDEAEFWE KSYLLRVVQNCKLKVDPSAPTDTNDYVPGTCNKKETAEKEFVSTSSSMKGKEQNNRDL LVCPLFIKDIAKSIVSAGKSLQLIRHVPMTSTLPSSKNNDKCNDGFESYHDDCDINKM NHWQCMTGLALAEIFCVSLAGLLGHGDHISQYFCQGDQSKAGIISSLFSYVKEQIMEY GTAEPLPPSTYSEKIWYNFLVDSLLKKKSIDVEPADKDSCCFPDTKAKNMVIGVENKF SLQQSFCPENLVLTVCQTFLDKNRNSWKALNLSEKFYLPPLNDEYLRKAVFGEKSELV SGPHGTNYTLGFQFGESDHLRAQHDTKLLEVLFPFPTLLPSLQDDIHMSELLPFQKNS TLLSRVLSWIQTFQPRTTPLPMVIMQECLTVYIKKQVDYIGSLILSKLMNGWRLMDEL AVLRAIYLLGSGDLLQHFLTVIFNKLDKGETWDDDFELNTILQESIRNSADGLLLSAP DSLVVSISKTHGIDGDEQTNTANVASALHKSRPHSYGIDGLDSVKFIYKVSWPLELIA NSEAIKKYNQVMAFLLKVKRAKFALDKARRWMWKDKGTVRNNRKRHWLVEQKLLHFVD AFHQYVMDRLLVIRCIIAHGVNFVKEWQLLGLWMKL" mobile_element complement(17319225..17319424) /note="source:CACAO_hAT_E71_scaffold_1 437 744" /mobile_element_type="transposon:TIR/hAT" gene complement(17319425..17345531) /locus_tag="TCM_044507" /note="dbxref CacaoGD:Thecc1EG044507" mRNA complement(join(17319425..17319503,17320549..17321114, 17321428..17321621,17322168..17322386,17327821..17327994, 17331532..17331633,17331725..17331791,17333852..17334004, 17334375..17334434,17334742..17334838,17335740..17335804, 17336104..17336244,17336606..17336674,17336757..17336815, 17336994..17337114,17338087..17338150,17338638..17338684, 17339941..17340069,17340188..17340346,17340458..17340519, 17342222..17342322,17344363..17344472,17344589..17344651, 17344727..17345158,17345414..17345531)) /locus_tag="TCM_044507" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032296001" /inference="similar to AA sequence:Phytozome:GSVIVT01032296001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5484t2" mobile_element complement(17319438..17319508) /note="source:INTACT383F_F354_scaffold_3-int 4010 4080" /mobile_element_type="retrotransposon:LTR/Unclassified" mRNA complement(join(17320538..17321112,17321427..17321621, 17322144..17322386,17327821..17327994,17331532..17331633, 17331725..17331791,17333852..17334004,17334375..17334434, 17334742..17334838,17335740..17335804,17336104..17336244, 17336606..17336674,17336757..17336815,17336994..17337114, 17338087..17338150,17338638..17338684,17339941..17340069, 17340188..17340346,17340458..17340519,17342222..17342322, 17344363..17344472,17344589..17344752)) /locus_tag="TCM_044507" /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /inference="similar to AA sequence:Phytozome:GSVIVT01032296001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc126t9" mobile_element complement(17320579..17320636) /note="source:scaffold_7_CACTA_0789 517 574" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(17320588..17321114,17321428..17321621, 17322168..17322386,17327821..17327994,17331532..17331633, 17331725..17331791,17333852..17334004,17334375..17334434, 17334742..17334838,17335740..17335804,17336104..17336244, 17336606..17336674,17336757..17336815,17336994..17337114, 17338087..17338150,17338638..17338684,17339941..17340069, 17340188..17340328,17340458..17340519,17342222..17342322, 17344363..17344472,17344589..17344651,17344727..17345056)) /locus_tag="TCM_044507" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032296001" /inference="similar to AA sequence:Phytozome:GSVIVT01032296001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5484t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5484t2" mRNA complement(join(17321086..17321114,17321428..17321621, 17322144..17322386,17327821..17327994,17331532..17331633, 17331725..17331791,17333852..17334004,17334375..17334434, 17334742..17334838,17335740..17335804,17336104..17336244, 17336606..17336674,17336757..17336815,17336994..17337114, 17338087..17338150,17338638..17338684,17339941..17340069, 17340188..17340328,17340458..17340519,17342222..17342253)) /locus_tag="TCM_044507" /product="Tetratricopeptide repeat-like superfamily protein isoform 4" /inference="similar to AA sequence:Phytozome:GSVIVT01032296001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7796t7" CDS complement(join(17321458..17321621,17322168..17322386, 17327821..17327994,17331532..17331633,17331725..17331791, 17333852..17334004,17334375..17334434,17334742..17334838, 17335740..17335804,17336104..17336244,17336606..17336674, 17336757..17336815,17336994..17337114,17338087..17338150, 17338638..17338684,17339941..17340069,17340188..17340328, 17340458..17340519,17342222..17342322,17344363..17344472, 17344589..17344651,17344727..17344786)) /locus_tag="TCM_044507" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3" /protein_id="EOY19418.1" /db_xref="Phytozome:GSVIVT01032296001" /db_xref="TAIR:AT1G17760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H057" /translation="MAAVDKYNVESAEILANSALHLPITQAAPIYEQLLSIFPTAAKY WRQYVEAQMAVNNDDATKQIFSRCLLNCLQIPLWRCYIRFIRKVNDKKGVEGQEETRK AFDFMLGYVGADIGSGPVWMEYIAFLKSLPAANTQEESQRMTAVRKAYQKAIVTPTHH VEQLWKDYENFENSVSRQLAKGLLSEYQPKYNSARAVYRERKKYVDEIDWNMLAVPPT DSCKEEMQWMTWKRLLAFEKGNPQRIDSASSNKRIIFTYEQCLMYLYHYPDIWYDYAT WHAKSGSMDAATKVFQRALKALPDSEMLKYAYAELEESRGAIQSAKKLYESPLGNGAD TTALAHIQFIRFIRRTEGVEAARKYFLDARKTPTCTYHVYVAYALMAFCLDKDPKVAH NVFEAGLKHFMHEPAYILEYADFLSCLNDDRNIRALFERALSSLPQEESIEVWKQFTQ FEQTYGDLASMLKVEQRRKEALSGKSEEAASVLESSLQDVVARYSFKDLWPCTSKDLD HLSRQEWLAKNIGKKVEKSAFSNGSVTIDKNPSAPTSNSTASVKVLYPDISQMVVYDP RQHSGTAAPPNTTAPAILAASNPLSNPTISAVDSGSANAFDEVLKATPPALVAFLTNL PALEGPKPNVDIVLSICLQSDLPTGQTKKLTALPSQRTTGPAPSTSDLSGSSKSHPIP SSSSFRPRDRHLGKRKDLDRQEEDETTTVQSQPLPRDVFRIRQIQKARGGSASQTGSV SYGSALSGDLSGSTY" CDS complement(join(17321458..17321621,17322168..17322386, 17327821..17327994,17331532..17331633,17331725..17331791, 17333852..17334004,17334375..17334434,17334742..17334838, 17335740..17335804,17336104..17336244,17336606..17336674, 17336757..17336815,17336994..17337114,17338087..17338150, 17338638..17338684,17339941..17340069,17340188..17340346, 17340458..17340519,17342222..17342322,17344363..17344472, 17344589..17344651,17344727..17344786)) /locus_tag="TCM_044507" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY19416.1" /db_xref="Phytozome:GSVIVT01032296001" /db_xref="TAIR:AT1G17760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H057" /translation="MAAVDKYNVESAEILANSALHLPITQAAPIYEQLLSIFPTAAKY WRQYVEAQMAVNNDDATKQIFSRCLLNCLQIPLWRCYIRFIRKVNDKKGVEGQEETRK AFDFMLGYVGADIGSGPVWMEYIAFLKSLPHKMVLQAANTQEESQRMTAVRKAYQKAI VTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQPKYNSARAVYRERKKYVDEIDWNM LAVPPTDSCKEEMQWMTWKRLLAFEKGNPQRIDSASSNKRIIFTYEQCLMYLYHYPDI WYDYATWHAKSGSMDAATKVFQRALKALPDSEMLKYAYAELEESRGAIQSAKKLYESP LGNGADTTALAHIQFIRFIRRTEGVEAARKYFLDARKTPTCTYHVYVAYALMAFCLDK DPKVAHNVFEAGLKHFMHEPAYILEYADFLSCLNDDRNIRALFERALSSLPQEESIEV WKQFTQFEQTYGDLASMLKVEQRRKEALSGKSEEAASVLESSLQDVVARYSFKDLWPC TSKDLDHLSRQEWLAKNIGKKVEKSAFSNGSVTIDKNPSAPTSNSTASVKVLYPDISQ MVVYDPRQHSGTAAPPNTTAPAILAASNPLSNPTISAVDSGSANAFDEVLKATPPALV AFLTNLPALEGPKPNVDIVLSICLQSDLPTGQTKKLTALPSQRTTGPAPSTSDLSGSS KSHPIPSSSSFRPRDRHLGKRKDLDRQEEDETTTVQSQPLPRDVFRIRQIQKARGGSA SQTGSVSYGSALSGDLSGSTY" CDS complement(join(17321458..17321621,17322144..17322386, 17327821..17327994,17331532..17331633,17331725..17331791, 17333852..17334004,17334375..17334434,17334742..17334838, 17335740..17335804,17336104..17336244,17336606..17336674, 17336757..17336815,17336994..17337114,17338087..17338150, 17338638..17338684,17339941..17340069,17340188..17340346, 17340458..17340519,17342222..17342322,17344363..17344439)) /locus_tag="TCM_044507" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /protein_id="EOY19417.1" /db_xref="Phytozome:GSVIVT01032296001" /db_xref="TAIR:AT1G17760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H057" /translation="MAVNNDDATKQIFSRCLLNCLQIPLWRCYIRFIRKVNDKKGVEG QEETRKAFDFMLGYVGADIGSGPVWMEYIAFLKSLPHKMVLQAANTQEESQRMTAVRK AYQKAIVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQPKYNSARAVYRERKKYVD EIDWNMLAVPPTDSCKEEMQWMTWKRLLAFEKGNPQRIDSASSNKRIIFTYEQCLMYL YHYPDIWYDYATWHAKSGSMDAATKVFQRALKALPDSEMLKYAYAELEESRGAIQSAK KLYESPLGNGADTTALAHIQFIRFIRRTEGVEAARKYFLDARKTPTCTYHVYVAYALM AFCLDKDPKVAHNVFEAGLKHFMHEPAYILEYADFLSCLNDDRNIRALFERALSSLPQ EESIEVWKQFTQFEQTYGDLASMLKVEQRRKEALSGKSEEAASVLESSLQDVVARYSF KDLWPCTSKDLDHLSRQEWLAKNIGKKVEKSAFSNGSVTIDKNPSAPTSNSTASVKVL YPDISQMVVYDPRQHSGTAAPPNTTAPAILAASNPLSNPTISAVDSGSANAFDEVLKA TPPALVAFLTNLPALEGPKPNVDIVLSICLQSDLPTGQTKKLTALPSQRTTGPAPSTS DLSGSSKSHPIPSSSSFRPRDRHLGKRKDLDSKFPAVFMGQEEDETTTVQSQPLPRDV FRIRQIQKARGGSASQTGSVSYGSALSGDLSGSTY" CDS complement(join(17321458..17321621,17322144..17322386, 17327821..17327994,17331532..17331633,17331725..17331791, 17333852..17334004,17334375..17334434,17334742..17334838, 17335740..17335804,17336104..17336244,17336606..17336674, 17336757..17336815,17336994..17337114,17338087..17338150, 17338638..17338684,17339941..17340069,17340188..17340328, 17340458..17340519,17342222..17342237)) /locus_tag="TCM_044507" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 4" /protein_id="EOY19419.1" /db_xref="Phytozome:GSVIVT01032296001" /db_xref="TAIR:AT1G17760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H057" /translation="MLGYVGADIGSGPVWMEYIAFLKSLPAANTQEESQRMTAVRKAY QKAIVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQPKYNSARAVYRERKKYVDEI DWNMLAVPPTDSCKEEMQWMTWKRLLAFEKGNPQRIDSASSNKRIIFTYEQCLMYLYH YPDIWYDYATWHAKSGSMDAATKVFQRALKALPDSEMLKYAYAELEESRGAIQSAKKL YESPLGNGADTTALAHIQFIRFIRRTEGVEAARKYFLDARKTPTCTYHVYVAYALMAF CLDKDPKVAHNVFEAGLKHFMHEPAYILEYADFLSCLNDDRNIRALFERALSSLPQEE SIEVWKQFTQFEQTYGDLASMLKVEQRRKEALSGKSEEAASVLESSLQDVVARYSFKD LWPCTSKDLDHLSRQEWLAKNIGKKVEKSAFSNGSVTIDKNPSAPTSNSTASVKVLYP DISQMVVYDPRQHSGTAAPPNTTAPAILAASNPLSNPTISAVDSGSANAFDEVLKATP PALVAFLTNLPALEGPKPNVDIVLSICLQSDLPTGQTKKLTALPSQRTTGPAPSTSDL SGSSKSHPIPSSSSFRPRDRHLGKRKDLDSKFPAVFMGQEEDETTTVQSQPLPRDVFR IRQIQKARGGSASQTGSVSYGSALSGDLSGSTY" mRNA complement(join(<17321592..17321621,17322168..17322386, 17327821..17327985,17331532..17331633,17331725..17331791, 17333852..17334004,17334375..17334434,17334742..17334838, 17335740..17335804,17336104..17336244,17336606..17336674, 17336757..17336815,17336994..17337114,17338087..17338150, 17338638..17338684,17339941..17340069,17340188..17340328, 17340458..17340519,17342222..>17342253)) /locus_tag="TCM_044507" /product="Tetratricopeptide repeat-like superfamily protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032296001" /inference="similar to AA sequence:Phytozome:GSVIVT01032296001" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc127t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5484t2" mRNA complement(join(<17321592..17321621,17322168..17322386, 17327821..17327994,17331532..17331633,17331725..17331791, 17333852..17334004,17334375..17334434,17334742..17334838, 17335740..17335804,17336104..17336244,17336606..17336674, 17336757..17336815,17336994..17337114,17338087..17338150, 17338638..17338684,17339941..17340069,17340188..17340328, 17340458..17340519,17342222..>17342253)) /locus_tag="TCM_044507" /product="Tetratricopeptide repeat-like superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032296001" /inference="similar to AA sequence:Phytozome:GSVIVT01032296001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7796t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5484t2" CDS complement(join(<17321593..17321621,17322168..17322386, 17327821..17327985,17331532..17331633,17331725..17331791, 17333852..17334004,17334375..17334434,17334742..17334838, 17335740..17335804,17336104..17336244,17336606..17336674, 17336757..17336815,17336994..17337114,17338087..17338150, 17338638..17338684,17339941..17340069,17340188..17340328, 17340458..17340519,17342222..>17342252)) /locus_tag="TCM_044507" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 6" /protein_id="EOY19421.1" /db_xref="Phytozome:GSVIVT01032296001" /db_xref="TAIR:AT1G17760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H9L6" /translation="KAFDFMLGYVGADIGSGPVWMEYIAFLKSLPAANTQEESQRMTA VRKAYQKAIVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQPKYNSARAVYRERKK YVDEIDWNMLAVPPTDSCKEEMQWMTWKRLLAFEKGNPQRIDSASSNKRIIFTYEQCL MYLYHYPDIWYDYATWHAKSGSMDAATKVFQRALKALPDSEMLKYAYAELEESRGAIQ SAKKLYESPLGNGADTTALAHIQFIRFIRRTEGVEAARKYFLDARKTPTCTYHVYVAY ALMAFCLDKDPKVAHNVFEAGLKHFMHEPAYILEYADFLSCLNDDRNIRALFERALSS LPQEESIEVWKQFTQFEQTYGDLASMLKVEQRRKEALSGKSEEAASVLESSLQDVVAR YSFKDLWPCTSKDLDHLSRQEWLAKNIGKKVEKSAFSNGSVTIDKNPSAPTSNSTASV KVLYPDISQMVVYDPRQHSAPPNTTAPAILAASNPLSNPTISAVDSGSANAFDEVLKA TPPALVAFLTNLPALEGPKPNVDIVLSICLQSDLPTGQTKKLTALPSQRTTGPAPSTS DLSGSSKSHPIPSSSSFRPRDRHLGKRKDLDRQEEDETTTV" CDS complement(join(<17321593..17321621,17322168..17322386, 17327821..17327994,17331532..17331633,17331725..17331791, 17333852..17334004,17334375..17334434,17334742..17334838, 17335740..17335804,17336104..17336244,17336606..17336674, 17336757..17336815,17336994..17337114,17338087..17338150, 17338638..17338684,17339941..17340069,17340188..17340328, 17340458..17340519,17342222..>17342252)) /locus_tag="TCM_044507" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 5" /protein_id="EOY19420.1" /db_xref="Phytozome:GSVIVT01032296001" /db_xref="TAIR:AT1G17760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H9L6" /translation="KAFDFMLGYVGADIGSGPVWMEYIAFLKSLPAANTQEESQRMTA VRKAYQKAIVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQPKYNSARAVYRERKK YVDEIDWNMLAVPPTDSCKEEMQWMTWKRLLAFEKGNPQRIDSASSNKRIIFTYEQCL MYLYHYPDIWYDYATWHAKSGSMDAATKVFQRALKALPDSEMLKYAYAELEESRGAIQ SAKKLYESPLGNGADTTALAHIQFIRFIRRTEGVEAARKYFLDARKTPTCTYHVYVAY ALMAFCLDKDPKVAHNVFEAGLKHFMHEPAYILEYADFLSCLNDDRNIRALFERALSS LPQEESIEVWKQFTQFEQTYGDLASMLKVEQRRKEALSGKSEEAASVLESSLQDVVAR YSFKDLWPCTSKDLDHLSRQEWLAKNIGKKVEKSAFSNGSVTIDKNPSAPTSNSTASV KVLYPDISQMVVYDPRQHSGTAAPPNTTAPAILAASNPLSNPTISAVDSGSANAFDEV LKATPPALVAFLTNLPALEGPKPNVDIVLSICLQSDLPTGQTKKLTALPSQRTTGPAP STSDLSGSSKSHPIPSSSSFRPRDRHLGKRKDLDRQEEDETTTV" mobile_element 17321852..17321884 /note="source:CACAO_M_E22127_F369_scaffold_3 1619 1650" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17323368..17326694 /locus_tag="TCM_044508" /note="dbxref CacaoGD:Thecc1EG044508" mRNA join(17323368..17323737,17323938..17324047, 17324117..17324261,17324401..17324636,17324768..17324970, 17325071..17325381,17325510..17325621,17325743..17326694) /locus_tag="TCM_044508" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma13g43100.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS join(17323491..17323737,17323938..17324047, 17324117..17324261,17324401..17324636,17324768..17324970, 17325071..17325381,17325510..17325621,17325743..17325908) /locus_tag="TCM_044508" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19422.1" /db_xref="Phytozome:Glyma13g43100.1" /translation="MRDRKGVFERSREENQERNRDRNLVRNHRIGSRRVRAVDWWDSQ GSKVSGGNEEFHRRAMEGEGRFGKSDIQQLEKRSVHSFFIEEAEKPKERNDEEGPVMH QNKKELYGGDQKSSYRDGLKVDSVKVDINEEEVEWLRLSAMGKLRTKTNCKAIQSALF REEVSAGANEVIDILEKGQKGGFLFKVDFEKAYDSVDWGFLQFIMGKIGFARKWRKWI MGCLTTDNISVLVNGVPTEGWKEAYDRAFIDNTMIFYKPQHQNLINAKRVLRCFQLVC SLKNNFHKSSLIGIGVDDQLVRRRAGRIACRIGELPSVGRVTLLQLVLVSLPIFFMSL FPILREVKNELEKIKRRFLWSGVQEKRKIHDIGWDKVCRYEDGGLGIIDLEIKNRTLL NKWIWRYGRERDSLWREVIVEKTRGGNERRIRFWTDRWTKGILKESFPKIFALATDKG GLVNETLSTPWYGKARQRGSSLLNLSAKMQYGSTAPTRECGKKFEPALLRLELRSSLG S" mobile_element 17345526..17346676 /note="source:scaffold_10_CACTA_0130 11081 12256" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17347022..17347078 /note="source:CACAO_M_E73087_F12_scaffold_10 9029 9088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17347821..17347929 /note="source:scaffold_10_CACTA_0130 10687 10778" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17349954..17351684) /note="source:CACAO_M_E71501_F60_scaffold_10 1 1731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17352744..17353575 /note="source:scaffold_10_CACTA_0130 11344 12232" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17354133..17354190 /note="source:scaffold_10_CACTA_0130 5995 6051" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17355236..17355560 /note="source:scaffold_10_CACTA_0130 9606 9902" /mobile_element_type="transposon:TIR/CACTA" gene complement(17356146..17363191) /locus_tag="TCM_044513" /note="dbxref CacaoGD:Thecc1EG044513" mRNA complement(join(17356146..17356558,17359912..17360618, 17362619..17363191)) /locus_tag="TCM_044513" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022777t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.49 coverage" CDS complement(join(17356346..17356558,17359912..17360076)) /locus_tag="TCM_044513" /note="paralog of Thecc1EG022777t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19423.1" /translation="MKHAFNGTPLNLGRFMVKRMRRACIKDKINLPYGNIITSLVQKK GIWCSKYETDKQYKKDIAQEPVKKRRPATQKPYSRSIVGATLEVIQKRSEKPKVRDAA REATLPRKGSRKLRMKRRLRKQK" mobile_element 17357084..17360643 /note="source:INTACT73_F14_scaffold_4-int 1 3566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17360644..17361205) /note="source:INTACT563_F255_scaffold_10-int 17377 17881" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17361206..17361675) /note="source:INTACT295_F13_scaffold_9-int 7252 7775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17361676..17380982) /note="source:INTACT563_F255_scaffold_10-int 1 17376" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17380924..17380992) /note="source:INTACT118_F5_scaffold_9-int 2746 2817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17380983..17387581 /note="source:CACAO_M_S_E66670_F14_scaffold_5 3565 10180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17396583..17397251 /note="source:scaffold_2_CACTA_0276 7493 8159" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17399228..17399322) /note="source:CACAO_M_E3248_F5_scaffold_1 16879 16966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17399245..17399325 /note="source:INTACT288_F14_scaffold_2-int 9036 9115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17399881..17400093) /note="source:CACAO_M_E2975_F12_scaffold_1 140 250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17400052..17400143 /note="source:CACAO_M_E5702_F90_scaffold_2 2036 2122" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17400077..17401732 /note="source:INTACT146F_F14_scaffold_2-int 3182 4919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17401729..17402534) /note="source:INTACT293_F14_scaffold_5-int 8682 9488" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17402499..17402529) /note="source:scaffold_5_CACTA_0611 4865 5125" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17402530..17402753 /note="source:INTACT779_F73_scaffold_9-int 4728 4951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17402854..17404897) /note="source:INTACT599_F268_scaffold_9-int 8222 10256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17404788..17405059 /note="source:INTACT779_F73_scaffold_9-int 2627 2897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17405097..17405698) /note="source:INTACT497_F83_scaffold_2-int 4884 5473" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17405363..17410171 /note="source:INTACT779_F73_scaffold_9-int 2539 7205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17410321..17410369) /note="source:INTACT116_F12_scaffold_7-int 1 49" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17415811..17417860 /locus_tag="TCM_044519" /note="dbxref CacaoGD:Thecc1EG044519" mRNA join(17415811..17416028,17416778..17417860) /locus_tag="TCM_044519" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017725t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS join(17415833..17416028,17416778..17417211) /locus_tag="TCM_044519" /note="paralog of Thecc1EG017725t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19424.1" /translation="MAKTSFTRKLAEKGKRKRKVDDSSTLSFKKKRKKKEPLDKKMKG GKTKMTKKGKGLVDAKTTTGKGIFLRNVLKKEYKIDRNECIKVTEGTPLPPLIGSPST PFTRASQPPLQSDMMFNIFMRIDGKTIDQAEKIEEKLQHLKALLHPTKETKSLEAPTT VTSQSSERTTTEQFEIATSDHEREAEKEILENKDVNQNENEDFEKELAK" mobile_element 17418173..17418309 /note="source:INTACT19F_F94_scaffold_1-int 14770 14908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17418195..17418322) /note="source:CACAO_M_E69945_F12_scaffold_9 980 1101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17419153..17419237 /note="source:INTACT1587F_F5_scaffold_9-int 718 795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17419225..17419293 /note="source:CACAO_M_S_E1820_F12_scaffold_1 9876 9935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17419379..17423798) /note="source:scaffold_10_CACTA_0131 1 4420" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17424423..17424487 /note="source:CACAO_M_E23991_F4_scaffold_4 3074 3138" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17424674..17424738 /note="source:CACAO_M_E23991_F4_scaffold_4 3074 3139" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17425164..17425229 /note="source:CACAO_M_E23991_F4_scaffold_4 3074 3139" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17425416..17425481 /note="source:CACAO_M_E23991_F4_scaffold_4 3074 3139" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17425668..17425733 /note="source:CACAO_M_E23991_F4_scaffold_4 3074 3139" /mobile_element_type="retrotransposon:LTR/Copia" gene 17427344..17428148 /locus_tag="TCM_044522" /note="dbxref CacaoGD:Thecc1EG044522" mRNA 17427344..17428148 /locus_tag="TCM_044522" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS 17427510..17427818 /locus_tag="TCM_044522" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19425.1" /translation="MGRFLSSMGGLCGNKSITMLKLSLKEKDALCSKIETMSKEKSCN AQGGEIATEMKGHDGDNCATSGNIRTRIEIARKYEVLEDFKLKLSQLSVVCSGKNEEG " gene 17429387..17434812 /locus_tag="TCM_044523" /note="dbxref CacaoGD:Thecc1EG044523" mRNA join(17429387..17429472,17432421..17432515, 17433593..17433688,17434155..17434205,17434292..17434524, 17434606..17434812) /locus_tag="TCM_044523" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS join(17432431..17432515,17433593..17433688, 17434155..17434205,17434292..17434524,17434606..17434623) /locus_tag="TCM_044523" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19426.1" /translation="MWRLAFFAIVWTSWLMCNEMVFQGKIWDGADVYCGVITSSFLRE VFLPFFFAFLLLIYGLGKEVGVGVVSQGRQWVKGMSDDSLGSVLQAMFGSKVLLLFVF FLNESLVERLKVLLSWLLSMLIRGLFKVAFVLDLAFATGDCVVGGLLPDCSFKEPPYF " gene complement(17435722..17439313) /locus_tag="TCM_044524" /note="dbxref CacaoGD:Thecc1EG044524" mRNA complement(join(17435722..17436758,17437094..17438330, 17439030..17439313)) /locus_tag="TCM_044524" /product="Cc-nbs-lrr resistance protein, putative" /inference="alignment:exonerate-protein:2:frave:gene34163" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044542t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s44570.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1385t2" CDS complement(join(17435922..17436758,17437094..17438330, 17439030..17439310)) /locus_tag="TCM_044524" /note="paralog of Thecc1EG044542t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative" /protein_id="EOY19427.1" /db_xref="Phytozome:POPTR_0001s44570.1" /translation="MFFKELKVLNVLVLRRVFLSLEELQFLTNLRTLHLEGCHLENAS ALGNLKELEILVIRYSDINKLPELWELTTLRLLVIWNYSPVLIPQNLQPRLERLEELH LYPYIQRRVISLLKLCSSPHLTSLTLTVSSRRIPKSFAFPRLQSFIIIVNLVAEDVYN VYETNSVGYLTSRRILAISGFSLNAFKKLFWNVEELTLDNVMDYKNIVPSADQGGLNE LTSFNIRDCKDLEYLIDTTQEQGPHSAAAFCNLVILTLTNMICLKELCHGRFPNGFLQ KLEILTILECNNLIVAIPDLPNIKEVSVEDCAGLEVVFQINGLLHASEENQTSMLSSL TNLELDSLPELKHIWKGPPHLVKLQSLGVIRIVSCDKLASLFPATIAQSLVHLEELHI HDCSELEHIITEAETDNNEIVSNTHLHPLCWPKLRTLDISNCPRLRYVFPTFVSECLP RLEVLCLKDLAQLKQVFSPAKERDGNNIPLKLLALQELSVENCPQLTCFIVQDQIKEL SLSKLGNSSQLCISTNCSQDYIAVGNHEEVFQVQGEYSFSSLNVLHLEDLSEVRLIWK DVPQVVTLENLTTLNVIDCKRLSYIFSPTTARGLSQLVCLNIQKCDKLDRIIAEDQVC SSSNADLQPISFPNLTTISVGFCKKLKSLFPLGSVRCLPKLEKLIVERNSELEQVFEL EDEAEVIIKKEIKFDQLEELSLQEQPSLIDFCPSGYHFVLPDLKCLMVTKCPKMTTCF FIDSEYSVHAKAEVYTLKTLILCSSRESFNDIIRRNLQSLYLND" mobile_element complement(17443233..17446261) /note="source:INTACT487_F4_scaffold_2-int 5701 8747" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17446315..17446843 /note="source:scaffold_2_CACTA_0276 9775 10312" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17450448..17453588 /note="source:CACAO_M_E84368_F4_scaffold_10 4512 7649" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17453589..17456289) /note="source:CACAO_M_S_E51369_F28_scaffold_4 3031 5720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17456287..17458604 /note="source:INTACT505_F28_scaffold_3-int 16932 19249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17458611..17460712 /note="source:CACAO_M_E84368_F4_scaffold_10 10595 12707" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17460846..17461829 /note="source:scaffold_2_CACTA_0276 7168 8167" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17461830..17467725 /note="source:CACAO_M_E4753_F17_scaffold_2 11638 14831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17470888..17471007) /note="source:CACAO_M_E58148_F12_scaffold_9 10827 10952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17470904..17471856 /note="source:INTACT595F_F13_scaffold_4-int 2445 3424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17471823..17471860) /note="source:CACAO_M_E14347_F12_scaffold_3 9022 9059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17475405..17475484 /note="source:scaffold_1_CACTA_0011 7433 7514" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17475420..17475494) /note="source:CACAO_M_E14347_F12_scaffold_3 8773 8844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17475439..17475501) /note="source:scaffold_3_CACTA_0384 746 808" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17476761..17476810 /note="source:CACAO_M_E85113_F12_scaffold_10 11805 11855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17476762..17476804) /note="source:CACAO_M_E12463_F12_scaffold_3 4571 4613" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17477170..17482220 /note="source:CACAO_hAT_E873_scaffold_2 1 5180" /mobile_element_type="transposon:TIR/hAT" gene complement(17481432..17485476) /locus_tag="TCM_044531" /note="dbxref CacaoGD:Thecc1EG044531" mRNA complement(17481432..17485476) /locus_tag="TCM_044531" /product="Receptor like protein 6, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044742t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13480.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage" CDS complement(17482109..17484946) /locus_tag="TCM_044531" /note="paralog of Thecc1EG044742t1" /codon_start=1 /product="Receptor like protein 6, putative" /protein_id="EOY19428.1" /db_xref="Phytozome:POPTR_0016s13480.1" /db_xref="TAIR:AT1G47890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGI7" /translation="MGSPLYLSISISLLNLLLLFFLVSSVRPLCHPDERSALLQFKES FVINNSASSSPDAHAKTESWKLERESGDCCSWDGVECDNGTGHVTGLNLGSSYLYGSI DSSSNLFHLVHLQRLNLADNVFKNSKVPSAVRNLSRVTSLDLSYSEFSAQIPSEILAL SELELLDLSGDSLKLRRPGLSSLLEKLTKLQGLYLTDVRISSSVPNILAKFSSLKALI LSNCDLRGEFPTGIFELPALLFLSLQSNPKLTGYLPDIQSNHPLLELSLANTNFFGQL PESSGNFKSLELLDIYNCHFSGKLPWSLGNLTELSYLDLSLNNFSGPIPPSLGNLKQL MTLDFSDNNFSGEIPSFIANLTQLVYLSLATNNFDRGTLSWLGTQINLTCLDLSNTGL SGKIPSALKNLTQITTLYLWSNRLEGQIPPWIGNLTKLTEIKFQKNILSGPIPESIFK LENLELLHLHVNQLNGILKLDSFLELKNLTRLRLSRNNLSLLNTVGINATALKIQVLG LAFCNLSEFPDFLRSQDELEVLQLAGNNIHGQIPKWFLRVGKETLWHLNLSFNFLTRF EELPVLLPWTSLELFDLKSSMFRGPLPHPPPSIVYYDFSNNSLSGEIPPILCNLSFLV ALDLSDNNLTGILPRCLVNLSDSLEVLNLRNNHFAGAIPSTYTKSCGLRMMDLSQNQL KGRTPRSLAHCTKLEFLNLGNYLINDTFPSWLGTLPELKVLILRANALHGVIVKPQAK SEFSKLQVIDLSDNSLRGKLASEYFNVWVAMELANTNSLSPYMNANTSFQTRGYEWSN YYNYVVTLANKDRDLRYEKVPDSISAIDLSSNQFQGEIPEVIGNLKLIRMLNLSNNNI TGHIPSSLGEITNLESLDLSRNKLSGQIPQQLANINFLEVFKVSYNNLEGPIPRAVQT GNSVNSVTGYPVTELTELLYKTNRNRTEVKN" mobile_element 17485637..17485688 /note="source:CACAO_M_E73087_F12_scaffold_10 9032 9083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17487054..17492514) /note="source:INTACT235_F12_scaffold_10-int 1 5461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17493458..17493781 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17254 17579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17493951..17494164 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17653 17855" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17494525..17494855) /note="source:INTACT687_F13_scaffold_3-int 1298 1642" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17495300..17581466) /locus_tag="TCM_044534" /note="dbxref CacaoGD:Thecc1EG044534" mRNA complement(join(17495300..17495540,17495657..17495888, 17496254..17497951,17498063..17498458,17498557..17498622, 17498731..17499186)) /locus_tag="TCM_044534" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29794.m003353" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; weak similarity to Cwf21; inference alignment:Newbler:10:TSA:cgbaP1_g00160t00001" mRNA complement(join(17495403..17495888,17496252..17497951, 17498063..17498458,17498557..17498622,17498731..17498916)) /locus_tag="TCM_044534" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29794.m003353" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4987t1; alternateUTRof:Thecc1EG044534t1; weak similarity to Cwf21; inference alignment:Newbler:10:TSA:cgbaP1_g00160t00001" mRNA complement(join(17495837..17495888,17496254..17497951, 17498063..17498458,17498557..17498585,17575503..17575524, 17576372..17576391,17581206..17581230,17581323..17581466)) /locus_tag="TCM_044534" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29794.m003353" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc315t25; alternateUTRof:Thecc1EG044534t1; weak similarity to Cwf21; inference alignment:Newbler:10:TSA:cgbaP1_g00160t00001" CDS complement(join(17496274..17497951,17498063..17498424)) /locus_tag="TCM_044534" /note="encoded by transcript variant 1; alternatively spliced; weak similarity to Cwf21" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19429.1" /db_xref="TAIR:AT3G49601.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DX36" /translation="MYNGIGLTTPRGSGTNGYIQSNKFFVKPKTNRVTDATRPFEAGQ GTAGLTTKKPNKDILEHDRKRQIELKLVILEDKLTEQGYTESEIADKLIEARKALEAQ QEKDEEEGEVIPTPTHQKKVSDTQTHQVAARKEKQMETLRAALGIGIELSESAAPPLM NSDKREHAFLDRERPIATAVDVDDIKVKTDKKKGQTIGDEIDKSKHWKKKKEKGSRHH DTDDETDSSIEYLKKAARKKSRKGYDSENDSDDFATGRKEKSAKKHDRRRPHDSDGNS DDSDSDLDRKDDETGKRNVDKHKTSRRRHDSSEVDSDTNGGKEKKRGEVQRQKIELSG SHRRRRDKNMDSESDSDSNGTRDRKKVTVKKGRYNYDTEEESDSDTAGDEKVEKSRVR GRRHDSDDDEDSSSSYDRKISKVTAPKQRVGRRRSVSLTDDSDSSSSDKDSDSSDQKH KIIGKKNVDRDRRGHGVNADNRGRGSQEDKEFASGAAKNHERRGRTINRDDSLRKSEN SREMMKGKRKLDDKYTDEQPESKSRSRNLGKEVEYERYDPKVDSRLVRSGGEFDGDNR KQDDRIQSKISESHHGSRRNDWDYEDRRGGGRQSKDEEEPRGRKHARDEMDHKYRSRG RDEEQQHGSRRQRKGEEDERGNKGRVRDRQLDHSVKVAYDDARSSERKSRRDDRR" CDS complement(join(17496274..17497951,17498063..17498424)) /locus_tag="TCM_044534" /note="encoded by transcript variant 2; alternatively spliced; weak similarity to Cwf21" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19430.1" /db_xref="TAIR:AT3G49601.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DX36" /translation="MYNGIGLTTPRGSGTNGYIQSNKFFVKPKTNRVTDATRPFEAGQ GTAGLTTKKPNKDILEHDRKRQIELKLVILEDKLTEQGYTESEIADKLIEARKALEAQ QEKDEEEGEVIPTPTHQKKVSDTQTHQVAARKEKQMETLRAALGIGIELSESAAPPLM NSDKREHAFLDRERPIATAVDVDDIKVKTDKKKGQTIGDEIDKSKHWKKKKEKGSRHH DTDDETDSSIEYLKKAARKKSRKGYDSENDSDDFATGRKEKSAKKHDRRRPHDSDGNS DDSDSDLDRKDDETGKRNVDKHKTSRRRHDSSEVDSDTNGGKEKKRGEVQRQKIELSG SHRRRRDKNMDSESDSDSNGTRDRKKVTVKKGRYNYDTEEESDSDTAGDEKVEKSRVR GRRHDSDDDEDSSSSYDRKISKVTAPKQRVGRRRSVSLTDDSDSSSSDKDSDSSDQKH KIIGKKNVDRDRRGHGVNADNRGRGSQEDKEFASGAAKNHERRGRTINRDDSLRKSEN SREMMKGKRKLDDKYTDEQPESKSRSRNLGKEVEYERYDPKVDSRLVRSGGEFDGDNR KQDDRIQSKISESHHGSRRNDWDYEDRRGGGRQSKDEEEPRGRKHARDEMDHKYRSRG RDEEQQHGSRRQRKGEEDERGNKGRVRDRQLDHSVKVAYDDARSSERKSRRDDRR" CDS complement(join(17496274..17497951,17498063..17498424)) /locus_tag="TCM_044534" /note="encoded by transcript variant 3; alternatively spliced; weak similarity to Cwf21" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19431.1" /db_xref="TAIR:AT3G49601.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DX36" /translation="MYNGIGLTTPRGSGTNGYIQSNKFFVKPKTNRVTDATRPFEAGQ GTAGLTTKKPNKDILEHDRKRQIELKLVILEDKLTEQGYTESEIADKLIEARKALEAQ QEKDEEEGEVIPTPTHQKKVSDTQTHQVAARKEKQMETLRAALGIGIELSESAAPPLM NSDKREHAFLDRERPIATAVDVDDIKVKTDKKKGQTIGDEIDKSKHWKKKKEKGSRHH DTDDETDSSIEYLKKAARKKSRKGYDSENDSDDFATGRKEKSAKKHDRRRPHDSDGNS DDSDSDLDRKDDETGKRNVDKHKTSRRRHDSSEVDSDTNGGKEKKRGEVQRQKIELSG SHRRRRDKNMDSESDSDSNGTRDRKKVTVKKGRYNYDTEEESDSDTAGDEKVEKSRVR GRRHDSDDDEDSSSSYDRKISKVTAPKQRVGRRRSVSLTDDSDSSSSDKDSDSSDQKH KIIGKKNVDRDRRGHGVNADNRGRGSQEDKEFASGAAKNHERRGRTINRDDSLRKSEN SREMMKGKRKLDDKYTDEQPESKSRSRNLGKEVEYERYDPKVDSRLVRSGGEFDGDNR KQDDRIQSKISESHHGSRRNDWDYEDRRGGGRQSKDEEEPRGRKHARDEMDHKYRSRG RDEEQQHGSRRQRKGEEDERGNKGRVRDRQLDHSVKVAYDDARSSERKSRRDDRR" mobile_element 17501177..17501218 /note="source:CACAO_M_S_E16683_F28_scaffold_2 8735 8776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17502169..17503049 /note="source:INTACT26_F13_scaffold_9-int 2997 3849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17503095..17503176 /note="source:CACAO_M_E23991_F4_scaffold_4 4464 4545" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17503678..17504548 /note="source:CACAO_M_S_E4413_F3_scaffold_1 456 1324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17504543..17505674) /note="source:CACAO_M_S_E119615_F3_scaffold_9 16484 17623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17505672..17507138 /note="source:CACAO_M_E23991_F4_scaffold_4 11087 12562" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17507182..17509776 /note="source:CACAO_M_E23991_F4_scaffold_4 12554 15123" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17510522..17510622) /note="source:CACAO_M_E23991_F4_scaffold_4 16035 16134" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17510878..17510912) /note="source:scaffold_2_CACTA_0253 4362 4396" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17512513..17512622 /note="source:scaffold_2_CACTA_0253 4300 4398" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17513249..17514761) /note="source:CACAO_M_E71479_F17_scaffold_10 1 1513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17519656..17519754 /note="source:scaffold_1_CACTA_0024 3072 3169" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17519882..17519961) /note="source:CACAO_M_E14347_F12_scaffold_3 8740 8823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17521050..17521142) /note="source:CACAO_M_E5326_F22_scaffold_2 17816 17907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17521063..17521675 /note="source:CACAO_M_S_E99244_F4_scaffold_9 9269 9876" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17521235..17521993 /note="source:CACAO_M_E24592_F195_scaffold_4 1569 2348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17522022..17523665 /note="source:scaffold_2_CACTA_0276 6558 8193" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17527094..17528610) /note="source:CACAO_M_E71478_F17_scaffold_10 1 1517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17539169..17539356 /note="source:CACAO_M_S_E16721_F36_scaffold_2 5805 5984" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17540697..17541401) /note="source:CACAO_M_E57482_F265_scaffold_9 1 737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17540778..17541413) /note="source:scaffold_2_CACTA_0253 7241 7898" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17542282..17543768) /note="source:CACAO_M_E45032_F215_scaffold_6 1 1483" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17544750..17550676) /locus_tag="TCM_044539" /note="dbxref CacaoGD:Thecc1EG044539" mRNA complement(join(17544750..17545139,17548203..17548439, 17550512..17550676)) /locus_tag="TCM_044539" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(17544996..17545139,17548203..17548325)) /locus_tag="TCM_044539" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19432.1" /translation="MLPPISASKGAPLFWGALDYCSIYLGSTCCGVVGRRMGAPRFPT NEYENNNDKNSGLDFGKNTCVDELDNEENIDNCLLSHGLLRLVE" gene complement(17545111..17551276) /locus_tag="TCM_044540" /note="dbxref CacaoGD:Thecc1EG044540" mRNA complement(join(17545111..17545301,17549809..17549960, 17550442..17550511,17550829..17551276)) /locus_tag="TCM_044540" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(join(17549881..17549960,17550442..17550511, 17550829..17550882)) /locus_tag="TCM_044540" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19433.1" /translation="MTKSLQSTLPSEQYLYENVGVDVDLVMVSFWHLNVVLFGTMGSS KDPSDPSDLERWNGSRANQDEGS" gene 17550768..17558229 /locus_tag="TCM_044542" /note="dbxref CacaoGD:Thecc1EG044542" mRNA join(17550768..17552853,17553570..17555328, 17555868..17556611,17557921..17558229) /locus_tag="TCM_044542" /product="Cc-nbs-lrr resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s28800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024673t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s43550.2" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc9475t1_G3" CDS join(17550950..17552853,17553570..17555328, 17555868..17556611,17557921..17558046) /locus_tag="TCM_044542" /note="paralog of Thecc1EG024673t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative" /protein_id="EOY19434.1" /db_xref="Phytozome:POPTR_0001s43550.2" /db_xref="TAIR:AT4G27220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SAE2" /translation="MAAEFAAAAAANTMGNLATEYASPYLSYFFRFGKIVDDFKNRRT ELELKKDRVKNDVDEALTQTKVIEKDVVDWLTRAEKELGEAQSLQDEMERKKCFNWCP SWGWQYCLSKRVVKKTLYISQLLETCNFQRIGHRATLPGLEFISSKDFMSSESSISAF KEVMDALNNCDVNMIGLYGMGGVGKTTLAKEVGKQVKQLFDKVVIVTVSQAPNVNSIQ DKIADFLDLVLEKKTIEGKAEQLWLRIKDVKNILIILDDVWEELDLKAIGIPFGDDHN GCKIFLTTRLQQVCTRMNCQKDVQLNILSEHEAWALFKDNAGLKDVPSPLNDVAKKVS GECKGLPLAIVTVGRALKDETLDGWKVVYQRLKDSRHMENQDVCGGIYNSLKISYDYL KTDSSRSCLLLCSLFPEDHEIRIEELIVYGIGQGIFDGVNLIEDARREMHVTITNLQK SGLLLKANDERLVKMHDVVRDFVHWMTSEGENTFMVKNGLKEWPKSRCYTAISLSKIN VFPDKLEFPNLKTFLLDCDCDNDNESLTRVPSMFFKGMKVLNVLVLKRVFLSLEGLQF LTNLRTLHLEGCHLENASALGNLKELEILVIRYSDINKLPYELWELTTLRLLVIWNYS PVLIPRNLQPRLERLEELHLYPYIQRRVISLLKLCSSPHLTSLTLTVSSRRIPKSFAF PRLQSFIIIVNLVAEDVYNVYETNSVGYLTSRRILAISGFSLNAFKKLFWNVEELTLD NVMDYKDIVPSADQGGLNELTSFNIRDCKDLEYLIDTTQEQGPHSAAAFCNLVILTLT NMICLKELCHGRFPNGFLQKLEILTISECNNLIVAIPGLPNIKELSVEDCARLEVVFQ INGRLHANEENQTSMLSSLTNLELDSLPELKHIWTGPPHLVKLQSLEVIRIASCDKLA SLFPATIAQSLVHLEELHIHDCSELEHIITEAETDNNEIVSDTHLHSLCWPKLKTVHI SCCPKLEYMFPNTSAQGLPCLELVEIIHSPQLKQVFNMASSEVSTYHLSLRKLRLVEI SSKTLASLFPKSVAESLVQLEILQIDRCPLLEQIFSEMKVSTHHANPPGLKDLEVRNC HRLPILFSVPLTPCLVQLERLELENCTILEQIISNKGVGDDKVLKNPLCLSKLTTLKI IACPRLEYIFPGFVAERLPQLKVLHLEDLAQIEQVISPADDRDGDDILLKLPALQTLS VKNCPQLTSFIIQAQIKELYLSKLGNSNQLCISANCNQDYIAVGNYEEVFQVHGGYSF SSIKELHLEHLSKVHNIWRSDVAQVVTLENLTILEVNDCKRLRHIFSPTTARSLSQLV DLNITKCDELDQIIAEDEVCSSSNRYPNPISFPNLTTISVRFCKKLKSLSPLGSACCL SKLQSLRVQGNSKLEQVFEPEDEEEAIAEKEIKFDRLRLLSLEELPSLIDFCPMGYHF VLSDLNCLIVEECPKLTTGFFIDSEKYVHAKAKALQLLQEDLIGGSTSTPNVFHAENI YWFSSMSGVLPPYMEE" mobile_element complement(17563976..17565305) /note="source:CACAO_M_S_E90022_F9_scaffold_8 13162 14499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17567262..17570594) /note="source:CACAO_M_E71475_F85_scaffold_10 1 3333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17570834..17571697 /note="source:CACAO_M_E84368_F4_scaffold_10 3597 4490" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(17573040..17578517) /locus_tag="TCM_044548" /note="dbxref CacaoGD:Thecc1EG044548" mRNA complement(join(17573040..17573129,17575290..17575531, 17575625..17575869,17576164..17576268,17577000..17577209, 17577930..17578517)) /locus_tag="TCM_044548" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(join(17575372..17575531,17575625..17575869, 17576164..17576268,17577000..17577209,17577930..17578097)) /locus_tag="TCM_044548" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19435.1" /translation="MRPGCYDQIEIEAMALQFFRELYRDDGIPESLPKRSHWRLDDNE STDISKPIIDEEILDQFCKASGQKVSLAKSRILFSSNVCSARVNLLSNTTKIPLTMDS GKYLGASMIHGRITRETYSELVFKFGWPMSYKNVQRYKAKLLAASMENSKLKESASIH LRNLTLFDAYFVWPHNAWQQIWTKAKDAWDNLSRKHFRIKKGVMISWKKPKYPFVKLN VDESAKGQPVMAAASGVIRDENGNWGFRKVQVESDSLLAIQKLTNQSSPLDPECSSSQ VYKRTTPTALGLHHISCSL" gene complement(17580949..17581825) /locus_tag="TCM_044549" /note="dbxref CacaoGD:Thecc1EG044549" mRNA complement(join(17580949..17581230,17581323..17581825)) /locus_tag="TCM_044549" /product="Cwf21" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g29550.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044552t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s24910.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14051t00001" CDS complement(join(17581107..17581230,17581323..17581675)) /locus_tag="TCM_044549" /note="paralog of Thecc1EG044552t1" /codon_start=1 /product="Cwf21" /protein_id="EOY19436.1" /db_xref="Phytozome:POPTR_0006s24910.1" /db_xref="TAIR:AT3G49601.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDZ1" /translation="MYNGIGLTTPRGSGSNGYVQGNKLFVKPKTNRLTVTTRPFEAGQ GTAGLTTKKPDKDILEHDRKRQIELKLVILEDKLTEQGYTDSEIADKLVQARKALEAQ DEEEGEVIPTPTHQKKVSDTQTHQVAARKEKQMETLRAALGIGIGLSESAAPCLSG" mobile_element 17586234..17587055 /note="source:CACAO_on_SS_E90_scaffold_6 10669 11481" /mobile_element_type="transposon:TIR/Mutator" misc_feature complement(join(17595114..17595815,17597259..17597344)) /locus_tag="TCM_044552" /note="Gene fragment of Thecc1EG044552t1; dbxref gnl|CacaoGD|Thecc1EG044552t1; quality class is mediumpartial-partof is thecc1eg044552t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9522t6; dbxref CacaoGD:Thecc1EG044550t1" gene complement(17597259..17598203) /locus_tag="TCM_044552" /note="dbxref CacaoGD:Thecc1EG044552" mRNA complement(join(17597259..17597605,17597693..17598203)) /locus_tag="TCM_044552" /product="Cwf21" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g027300.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044549t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s24910.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4934t1" CDS complement(join(17597482..17597605,17597693..17598045)) /locus_tag="TCM_044552" /note="paralog of Thecc1EG044549t1" /codon_start=1 /product="Cwf21" /protein_id="EOY19437.1" /db_xref="Phytozome:POPTR_0006s24910.1" /db_xref="TAIR:AT3G49601.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDZ1" /translation="MYNGIGLTTPRGSGSNGYVQSNKFFVKPKTNRLTDTTRPFEAGQ GTAGLSTKKPDKDILEHDRKRQIELKLVILEDKLTEQGYTNSEIADKLVQARKALEAQ DEEEGEVIPTPAHQKKVSDTQTHQVAVRKEKQMETLRAALGIEIGLSESAAPCLSG" gene complement(17600662..17607831) /locus_tag="TCM_044553" /note="dbxref CacaoGD:Thecc1EG044553" mRNA complement(join(17600662..17601641,17601720..17601869, 17604069..17604215,17604306..17604393,17606603..17606748, 17606834..17607071,17607422..17607831)) /locus_tag="TCM_044553" /product="Zinc ion binding" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18860.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s18860.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9671t7" CDS complement(join(17601558..17601641,17601720..17601869, 17604069..17604215,17604306..17604393,17606603..17606748, 17606834..17607071,17607422..17607669)) /locus_tag="TCM_044553" /codon_start=1 /product="Zinc ion binding" /protein_id="EOY19438.1" /db_xref="Phytozome:POPTR_0003s18860.1" /db_xref="TAIR:AT3G54360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2V1" /translation="MTTPVCPFVKAARPDDAGSAKKAATGGSEAARKDSGDTATVSPK CPFGYDSNNFKLGPLSCMICQALLFDSTKCIPCSHLFCKVCISRFKDCPLCGADIEKL EPDTNLQSIVDRFIEGHARIKRAHVDTNGEGEQVLNEDKKVIYEDVSLDRGAFLVQQA MRAFRAQNIESAKSRLSMCAEDIRDQLDKVGNTSELCSQLGAVLGMLGDCCRAMGDAG AAINYFEESVEFLTKLPTDDLEITHTLSVSLNKIGDLKYYDGDLQAARSYYFRSLGVR RDVIKHNPRVSSQILDVAVSLAKVADVDRTLGKDDVAVDGFQEAITMLESLTLKSEET GLQARRHSVLEFLKTQLAEKQSEATVSSVPPQ" mobile_element 17607966..17609281 /note="source:INTACT653_F88_scaffold_9-int 1 1284" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17611830..17613017) /note="source:CACAO_M_E5800_F12_scaffold_2 20024 21151" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17613009..17613565) /note="source:scaffold_1_CACTA_0009 13282 13837" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17613553..17617436 /note="source:CACAO_M_E33977_F20_scaffold_4 5774 9619" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17613566..17613779) /note="source:CACAO_Mutator_E39_scaffold_1 3330 4096" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17617254..17617674) /note="source:CACAO_Mutator_E1410_scaffold_6 5053 5472" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17618094..17621040) /note="source:CACAO_Mutator_E1410_scaffold_6 2087 5060" /mobile_element_type="transposon:TIR/Mutator" gene complement(17618481..17622642) /locus_tag="TCM_044555" /note="dbxref CacaoGD:Thecc1EG044555" mRNA complement(join(17618481..17618656,17618772..17619009, 17619099..17619189,17619322..17619462,17619552..17619853, 17619911..17620020,17620105..17620303,17620551..17620721, 17620815..17620886,17621024..17621113,17621188..17621284, 17621368..17621459,17621803..17622063,17622249..17622642)) /locus_tag="TCM_044555" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019668t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage" CDS complement(join(17618791..17619009,17619099..17619189, 17619322..17619462,17619552..17619853,17619911..17620020, 17620105..17620303,17620551..17620721,17620815..17620886, 17621024..17621113,17621188..17621284,17621368..17621459, 17621803..17622063,17622249..17622497)) /locus_tag="TCM_044555" /note="paralog of Thecc1EG019668t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19439.1" /translation="MPKEKWVFNVSINTHCKWSQLHYITKTLQQKGEYDLVKRTCFGM LLDVYPQRYFYVGLLHSIMIRQILRASQWTTSYGLPLARPPGDATKMAFILIANNILF DQDYRRRVTPWLLSLVEDIDAWNVFPWGHYVWKLTLDYLLKGFKVLNLSVTKETRLRY NIYGFAWVIQLWALEMLEPTTDEAFREYFVDFDVPLSKGHEASGGTKRMHASAALVDE LMDEGDEHGQGSEQPLDHGPAAPEPPTGHPQMQSGNDPSVQKRRQHAEVMIGPQAPIG PAPPQTANEPSSRTVNDGAVTIRQLRRIMRKHEKEMLELKASIQSLSVAMQTFKDCIV ARILDGLKSQNILLVILDVSPSLSCYAWHVTTFYTFCMECHNIFLVILGVSPSLSCYA WSVTTFYLFCMACDNILLDGPSHGAGLEHDDADDGQHHEPGVDIDYDVLGADREHSDD AEREHLPPVDAFLDAAAGAIVLYRGSTPDAVEIRSSSPESSVVHHGAIEISDQTERAR LKMASKYMASSFVDPLVTRRDVRDKIVENYEALKKEESARRNVDILGDQGADFFITLE DPNEEMTSEHIDACLNLLCKRMTGPKSKLTPSVCYTPNFQQKMPKPQCKFQMGCGAMW RIDLVRWMIKVVDSARTSDAKDNRVRACQMTPLTIMMPFICHQAGYFNNIRRKRWDLT PMPLDIHLPKPKVHR" mobile_element 17621039..17623360 /note="source:CACAO_M_E33977_F20_scaffold_4 13241 15626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17624315..17632525 /note="source:CACAO_M_E3884_F22_scaffold_1 6630 20118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17636083..17638982) /note="source:CACAO_M_S_E83372_F14_scaffold_6 19996 22954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17644457..17645100 /note="source:CACAO_M_S_E1495_F60_scaffold_1 3 649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17645101..17646189) /note="source:CACAO_M_E69800_F12_scaffold_9 13532 14616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17646181..17646230 /note="source:CACAO_M_S_E52921_F60_scaffold_5 664 713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17646218..17648522 /note="source:CACAO_M_E58324_F9_scaffold_9 6209 9292" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17648523..17648646 /note="source:CACAO_M_S_E15657_F60_scaffold_2 8211 8334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17648647..17651644) /note="source:CACAO_M_S_E121846_F7_scaffold_10 1 2998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17651645..17657305 /note="source:CACAO_M_S_E15657_F60_scaffold_2 808 6492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17657274..17660012 /note="source:INTACT254_F60_scaffold_3-int 5989 8722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17660013..17660060 /note="source:CACAO_M_S_E109853_F60_scaffold_9 10348 10395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17661680..17661791 /note="source:CACAO_M_S_E6875_F7_scaffold_2 10336 10447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17662539..17662709) /note="source:CACAO_M_S_E5046_F335_scaffold_1 2617 2784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17663956..17672468 /note="source:CACAO_M_E12710_F15_scaffold_3 1 8506" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17672473..17674397) /note="source:CACAO_M_E5210_F15_scaffold_2 1 1925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17674245..17674416 /note="source:CACAO_M_E9978_F12_scaffold_2 8884 9055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17677358..17678408 /note="source:CACAO_M_S_E85177_F5_scaffold_7 2869 3919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17678413..17679452 /note="source:CACAO_M_S_E85177_F5_scaffold_7 2880 3919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17679457..17680496) /note="source:CACAO_M_E58877_F5_scaffold_9 21467 22506" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17680500..17683329 /note="source:CACAO_M_E516_F5_scaffold_1 2903 5739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17683315..17683858 /note="source:INTACT594_F265_scaffold_8-int 2719 3271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17684376..17691906) /note="source:INTACT283_F50_scaffold_9-int 2812 10268" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17692577..17702010) /note="source:INTACT1625F_F66_scaffold_10-int 1 9434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17704405..17705186 /note="source:INTACT594_F265_scaffold_8-int 4421 5215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17705874..17710216 /note="source:INTACT443_F215_scaffold_4-int 1063 5434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17710240..17710670 /note="source:CACAO_M_E85026_F215_scaffold_10 1066 1495" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17711813..17718518 /locus_tag="TCM_044562" /note="dbxref CacaoGD:Thecc1EG044562" mRNA join(17711813..17712374,17713519..17715674, 17717598..17718518) /locus_tag="TCM_044562" /product="Leucine-rich repeat receptor-like protein kinase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003947t2" /inference="similar to AA sequence:Phytozome:POPTR_0014s18490.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4943t1" CDS join(17713666..17715674,17717598..17717667) /locus_tag="TCM_044562" /note="paralog of Thecc1EG003947t2" /codon_start=1 /product="Leucine-rich repeat receptor-like protein kinase family protein, putative" /protein_id="EOY19440.1" /db_xref="Phytozome:POPTR_0014s18490.1" /db_xref="TAIR:AT1G35710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IBE4" /translation="MSSHRNPCLVLFHVVLLSLLPLKITCSARTQAEALVQWKNSLSF SPPSLNSWSLSNLNNLCNWTSITCDGTGTVCEINLSNANMSGSIAQFNFTPFANLTRL DLINSGMEGPIPSAIGTLSKLLVLDLSNNSFEGNIPSEIGRLAELQYLSLFNNNLNGT IPSQVSNLQKVRYLDLGFNYFVSIDWSDFLVMPLLTHLSLAYNEFDQLEFSQFILNYR NLTSLDLSLNKLTGPIPESLYTNLSKLEYLNLTSNAFEGPLSSNISKLSQLIDLRLGT NQLNGSIPESIGTMSNLETVELFENPFEGKIPSSFSQLRKLKKLDLHSGGLNSAIPSE LGSCTNLTSLVLAGNQMSGKLPMSLSQLTKIIELGLSDNSFDGEIPPALISNWTNLIS LELQNNLFTGRIPPEIGLLTKLHLLFLYGNKLSGSIPSEIGNLKSMITLDLSGNQLLG PIPRTIWSLSNLTVLQLFYNELSGTIPPEVGNMTSLESLDLNTNLLHGELPDSISNLT NLKSISLFTNSFSGSIPRDFGKYSPNLIYVSFSSNSFSGELPPELCSGFALQNLTVNG NNFTGSLPACLRNCTRLRRVRFDGNQFTGDITNAFGVYPDLDFITLSDNQFTGEISPE WGDCQSLTHLAMDNNKIFGEIPAELGKLSQLRFLNLRANKLTGVLVDLEKEFVPDFLQ VEGQEDDVNL" mobile_element complement(17715659..17717798) /note="source:CACAO_M_E84368_F4_scaffold_10 11082 13217" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17717802..17723098 /note="source:CACAO_on_S_E46_scaffold_2 7394 12599" /mobile_element_type="transposon:TIR/Mutator" mobile_element 17719109..17729980 /note="source:INTACT464_F222_scaffold_9-int 1287 11923" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17721181..17728293 /locus_tag="TCM_044564" /note="dbxref CacaoGD:Thecc1EG044564" mRNA join(17721181..17721492,17721673..17721889, 17721999..17722497,17722687..17723037,17723122..17723376, 17723628..17723962,17724060..17724112,17724201..17724687, 17725115..17725189,17725322..17725498,17725593..17726058, 17726575..17727186,17727268..17727433,17727495..17728293) /locus_tag="TCM_044564" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014421t1" /inference="similar to AA sequence:Phytozome:Glyma10g13910.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS join(17721266..17721492,17721673..17721889, 17721999..17722497,17722687..17723037,17723122..17723376, 17723628..17723962,17724060..17724112,17724201..17724687, 17725115..17725189,17725322..17725498,17725593..17725685) /locus_tag="TCM_044564" /note="paralog of Thecc1EG014421t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19441.1" /db_xref="Phytozome:Glyma10g13910.1" /translation="MMELMISFSKGKRVIEEPTPSKNPPAQDSGNQRDDPPYPPRFTP PHAQTSQRVHPQVMPSVYYNAPPPMGHQPTHGFDTMDATELCLVPDVLIPAKFKVLEF EKYDGTKCPMAHITMYCRKMVAQSHDDKLLIQFFQDSLIGSVARWYTMEKKQSENFKE YAQKWRDTVAQVQPPLTDKEMTVLFINTFRAPLYERLIGNATKNFTDLVLSGEIIKGA IKSGKIEGHEVANSKKGNTSKKKEGDVQAVAHDNQQAHNFNPYYPYPPYQPFYPNIGN ITQNPYVYQPTPQPTFQTNVLPQTPPSRPVASTNNPGHGHSTENCITLKHKVQALIKA GLLNFAKKDSSSVDGNPLPNHGRPTVNAIHEGMIRRVKKSIDEIQTPMDKVFEALSKI NAITPEPIDTKELGHDLAYSCKFHIGAIGHSIQNCDSFRDTPAEVASSSFGANKPKPL TIFYEENRSPMNDTSPTMIRSGITIEVPSPFPYKSDKAVPWNYECNILSTTSSALQAS FEDLTGVGAHRNALLKVLNQAYVSQDISVEKLNHIVGNITVGNFISFNDEEIPSGGRG SNKALHITIKCKDHTVPRVLVDNGSALNVMPRSTLTKLPIDVSYMRTSRMVIRAFDGT TREVGVHGFVWQEPYHLPFTKKGDRRSPECSFRSFEFVNATYVGEGEVIPTPRFSIAT KVGVKQTVGKGCHAGLGLEKNLQGINRPLTPIKNEERFGLGYTPTKEERRKLATRKKI KRMAQLEGKEEEFRERTIPHLYETFHSAGFIHPEAPTKVNQILRVFDELSIHMIKDEE PNEKIPVVYPEEKEILPHQKLTETINLENGEEKKELPLGSDCKPIKQKLRRMKPEMLL KITEEVKKQFDAGFLEVAKYPEWVANIVPVPKKDGKQSTLCSHSWMAFLVTIRLRWHP KIWKKQRS" mobile_element complement(17729585..17730421) /note="source:INTACT117_F146_scaffold_2-int 2113 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17730422..17731070 /note="source:CACAO_on_S_E46_scaffold_2 8985 9638" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17731071..17731624) /note="source:CACAO_M_E84368_F4_scaffold_10 10528 11083" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17732516..17732949) /note="source:CACAO_M_S_E173_F215_scaffold_1 5 419" /mobile_element_type="retrotransposon:LTR/Gypsy" misc_feature complement(join(17733316..17733965,17734677..17734720, 17734803..17734835,17736369..17736388)) /locus_tag="TCM_044567" /note="Gene fragment of Thecc1EG044567t1; dbxref gnl|CacaoGD|Thecc1EG044567t1; quality class is mediumpartial-partof is thecc1eg044567t1, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc21410t1; dbxref CacaoGD:Thecc1EG044566t1" gene complement(17733406..17740678) /locus_tag="TCM_044567" /note="dbxref CacaoGD:Thecc1EG044567" mRNA complement(join(17733406..17733965,17734677..17734835, 17736548..17736559,17736699..17738379)) /locus_tag="TCM_044567" /product="Pentatricopeptide repeat-containing protein, putative isoform 3" /inference="similar to AA sequence:ricco:29686.m000888" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4961t2" mRNA complement(join(17733936..17734582,17734677..17734835, 17736369..17736559,17736699..17738889)) /locus_tag="TCM_044567" /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /inference="similar to AA sequence:ricco:29686.m000888" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8488t6; alternateUTRof:Thecc1EG044567t1; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8488t6" mRNA complement(join(17734330..17734582,17734677..17734835, 17736369..17736559,17736699..17738813,17740314..17740678)) /locus_tag="TCM_044567" /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /inference="similar to AA sequence:ricco:29686.m000888" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8488t6" CDS complement(17736771..17738756) /locus_tag="TCM_044567" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29686.m000888" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /protein_id="EOY19442.1" /db_xref="TAIR:AT2G19280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHV3" /translation="MKASFSVVNKLLFRRKTPFWHIPSKNSVSVSSSLLESQHVITQH SQVCNPLSLIKSILWKRGWNINPDNLCPIDFNESSVIGILTHLFEESLDAELALYFFK LSERCVGSLHSVKSVCKMIHILVSGNMNHRAVDFILRLVRISCSKDVSEDLLLKLFYE THSDRMVLETVCSMLVDCYIKENEVGLALELACKMKSFNMIPSIGVCNSLLKALLELN ELDLAWDFLDQMLRQGSGLNVAIVSLFIDKYCRKGQLLSAWTFLMEMKNYGIKPDVVA YTIIIDSLCKVSCLGEATSLLFKITRLGISPDSVLVSSVVEGHCKAGKPKEAINVINF FNLKPNIFVYNSFISKLCADGDMVEASLIFQDMFELGLLPDCVSYTTIIGGYCKDQDM NRAFQYFGKMLKCGIKPSVTTYTVLIDACCKSEDLEMAECLFQKMIMAGLVPDIVTFN TVIDGYGKKGHLHKAFMLLDMMRSAGISPDVTTYNIIIHSLIERGFTNEAKVILDELV QRGISPDMVTFTNIIDGLSKKGDFEEAFLIWFYMSERHVKPDVVTCSALLNGYCRARR MEEANTLFLRMLDVGLNPDLVLYNTLIHGFCRTGNMDEACNLVTMMVRNGILPNNVTH QAFVLGFEKKWVKNPEESAALKLQQLLLRHDIHVDVD" CDS complement(17736771..17738756) /locus_tag="TCM_044567" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29686.m000888" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /protein_id="EOY19443.1" /db_xref="TAIR:AT2G19280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHV3" /translation="MKASFSVVNKLLFRRKTPFWHIPSKNSVSVSSSLLESQHVITQH SQVCNPLSLIKSILWKRGWNINPDNLCPIDFNESSVIGILTHLFEESLDAELALYFFK LSERCVGSLHSVKSVCKMIHILVSGNMNHRAVDFILRLVRISCSKDVSEDLLLKLFYE THSDRMVLETVCSMLVDCYIKENEVGLALELACKMKSFNMIPSIGVCNSLLKALLELN ELDLAWDFLDQMLRQGSGLNVAIVSLFIDKYCRKGQLLSAWTFLMEMKNYGIKPDVVA YTIIIDSLCKVSCLGEATSLLFKITRLGISPDSVLVSSVVEGHCKAGKPKEAINVINF FNLKPNIFVYNSFISKLCADGDMVEASLIFQDMFELGLLPDCVSYTTIIGGYCKDQDM NRAFQYFGKMLKCGIKPSVTTYTVLIDACCKSEDLEMAECLFQKMIMAGLVPDIVTFN TVIDGYGKKGHLHKAFMLLDMMRSAGISPDVTTYNIIIHSLIERGFTNEAKVILDELV QRGISPDMVTFTNIIDGLSKKGDFEEAFLIWFYMSERHVKPDVVTCSALLNGYCRARR MEEANTLFLRMLDVGLNPDLVLYNTLIHGFCRTGNMDEACNLVTMMVRNGILPNNVTH QAFVLGFEKKWVKNPEESAALKLQQLLLRHDIHVDVD" CDS complement(17736771..17738372) /locus_tag="TCM_044567" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29686.m000888" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 3" /protein_id="EOY19444.1" /db_xref="TAIR:AT2G19280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHV3" /translation="MNHRAVDFILRLVRISCSKDVSEDLLLKLFYETHSDRMVLETVC SMLVDCYIKENEVGLALELACKMKSFNMIPSIGVCNSLLKALLELNELDLAWDFLDQM LRQGSGLNVAIVSLFIDKYCRKGQLLSAWTFLMEMKNYGIKPDVVAYTIIIDSLCKVS CLGEATSLLFKITRLGISPDSVLVSSVVEGHCKAGKPKEAINVINFFNLKPNIFVYNS FISKLCADGDMVEASLIFQDMFELGLLPDCVSYTTIIGGYCKDQDMNRAFQYFGKMLK CGIKPSVTTYTVLIDACCKSEDLEMAECLFQKMIMAGLVPDIVTFNTVIDGYGKKGHL HKAFMLLDMMRSAGISPDVTTYNIIIHSLIERGFTNEAKVILDELVQRGISPDMVTFT NIIDGLSKKGDFEEAFLIWFYMSERHVKPDVVTCSALLNGYCRARRMEEANTLFLRML DVGLNPDLVLYNTLIHGFCRTGNMDEACNLVTMMVRNGILPNNVTHQAFVLGFEKKWV KNPEESAALKLQQLLLRHDIHVDVD" mobile_element complement(17739200..17739332) /note="source:scaffold_5_CACTA_0610 5138 5281" /mobile_element_type="transposon:TIR/CACTA" gene 17740553..17762300 /locus_tag="TCM_044568" /note="dbxref CacaoGD:Thecc1EG044568" mRNA join(17740553..17740678,17741123..17741225, 17741496..17741886,17761946..17762300) /locus_tag="TCM_044568" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032855t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS join(17741132..17741225,17741496..17741857) /locus_tag="TCM_044568" /note="paralog of Thecc1EG032855t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19445.1" /translation="MLEALNEDMEFMSSDDEFEDSDSETDDNERKANEAQKVRSSGRF CTSNMSISNFFMGQSFKDPGHFKVILCKYNMVKHSAFIYKKNDNVRVRAKCVVIGYEW GILALKHKNDNSFRVKTYLGTHHCLPTNKNKQVTTKVLTRKLKDDIIKI" mobile_element complement(17745995..17748601) /note="source:CACAO_M_E71458_F74_scaffold_10 1 2607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17753662..17756615) /note="source:CACAO_M_E71457_F172_scaffold_10 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17762899..17764998) /locus_tag="TCM_044571" /note="dbxref CacaoGD:Thecc1EG044571" mRNA complement(join(17762899..17764331,17764433..17764998)) /locus_tag="TCM_044571" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.69 coverage" CDS complement(17763394..17763888) /locus_tag="TCM_044571" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19446.1" /translation="MEEEKWLWIVRDIDFRAQGFVINPSWRNGRNLCIQLSWIISQRE FPRLKLKRFFDEFEVVVDVFVLESASRKRYNFAFVRFSEERELRPAIKGGTKLYIAGR QLLVKEAYTASRRMPLLFFDKLVVDQSLPRTFKEVTKSERPVHVGSRPKVEPPVKDKE EDKA" gene complement(17765129..17797598) /locus_tag="TCM_044572" /note="dbxref CacaoGD:Thecc1EG044572" mRNA complement(join(17765129..17766062,17766151..17766184, 17766269..17766328,17766571..17766704,17768947..17768985, 17771521..17771619,17773575..17773703,17773929..17774075, 17775356..17775486,17776953..17777172,17777833..17777926, 17778012..17778124,17778719..17778853,17778957..17779020, 17779140..17779192,17779272..17779376,17779454..17779558, 17782384..17782471,17783868..17783986,17784091..17784150, 17784539..17784634,17784714..17784866,17785075..17785161, 17791322..17791389,17792063..17792186,17793688..17793783, 17793896..17794005,17794128..17794245,17795101..17795166, 17795896..17796056,17796159..17796410,17796505..17797086, 17797207..17797598)) /locus_tag="TCM_044572" /product="ARM repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07340.1" /inference="similar to AA sequence:ricco:29686.m000889" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5022t2" CDS complement(join(17765856..17766062,17766151..17766184, 17766269..17766328,17766571..17766704,17768947..17768985, 17771521..17771619,17773575..17773703,17773929..17774075, 17775356..17775486,17776953..17777172,17777833..17777926, 17778012..17778124,17778719..17778853,17778957..17779020, 17779140..17779192,17779272..17779376,17779454..17779558, 17782384..17782471,17783868..17783986,17784091..17784150, 17784539..17784634,17784714..17784866,17785075..17785161, 17791322..17791389,17792063..17792186,17793688..17793783, 17793896..17794005,17794128..17794245,17795101..17795166, 17795896..17796056,17796159..17796399)) /locus_tag="TCM_044572" /note="dbxref ricco:29686.m000889" /codon_start=1 /product="ARM repeat superfamily protein" /protein_id="EOY19447.1" /db_xref="TAIR:AT5G06120.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K2C1" /translation="MENLAQLEALCERLYNSQDSAERAHAENTLKCFSVNTDYISQCQ YILENALTPYALMLASSSLLKQVTDHSLALPLRIDIWTYLFNYLATRGPKLEQFVTAS LIQLLSRVTKFGWFDDERFRDVVKESTNFLSQGTSEHYAIGLKILNQLVSEMNQPNPG LSSTHHRRVACSFRDQSLFQIFQISLTSLRHLKNDVASRLQELALSLALKCLSFDFVG TSIDESSEEFGTVQIPSSWRPVLEDSSTLQIFFDYYSITKAPLSKEALECLVRLASVR RSLFANEAARSKFLAHLMTGTKEILQSGQGLADHDNYHEYCRLLGRFRVNYQLSELVN VEGYSDWIRLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVSSVPYLKGDAPSLLDEFV PKITESFLTSRFNSVQAGFPDDLSENPLDNVELLQDQLDCFPYLCRFQYESSGLYIIN MMEPILQSYTERARLQTCDKNELSVIEAKLTWIVHIIAAILKIKQCTGCSMESQEVLD AELSARVLQLINVTDSGLHSQRYGELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQL YARLSELLGLHDHLLLLNVIVGKIATNLKCYTESEEVIDHTLSLFLELASGYMTGKLL LKLETVKFIIANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFMEDSPVKFKSSMEPLL QVFLSLESTPDSVFRTDAVKYALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLI LKGITHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLLVAYGTR ILSLPNPADIYAFKYKGIWISLTILARALAGNYVNFGVFELYGDRALSDALDVALKMT LSIPLADILAFRKLTRAYFSFLEVLFNSHISFILNLDAATFMHIVGSLESGLKGLDTN ISSQCASAVDNLAAFYFNNITMGEAPTSPAAVKLAQHIADCPSLFPQILKTLFEIVLF EDCGNQWSLSRPMLSLVLISEQIFADLKAQILGSQPVDQHQRLSICFDKLMTDVTRSL DSKNRDKFTQNLTVFRHEFRVKSILECYKGLPRCIKLVASLTDGSYLRYPKKEHKEGK QNWVKFGSVFFWLGCGSPEPFLQHISVCMHIIHLQCDILCLAVGAEWKGNFPRQHGAN FCFVR" mobile_element 17786212..17787146 /note="source:CACAO_M_E42514_F40_scaffold_5 1 922" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17787147..17790539) /note="source:CACAO_M_S_E66869_F40_scaffold_6 355 3810" /mobile_element_type="retrotransposon:LTR/Copia" gene 17788527..17789850 /locus_tag="TCM_044573" /note="dbxref CacaoGD:Thecc1EG044573" mRNA join(17788527..17788955,17789150..17789368, 17789439..17789850) /locus_tag="TCM_044573" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="alignment:exonerate- protein:2:frave:gene08647.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023911t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS join(17788554..17788955,17789150..17789368, 17789439..17789597) /locus_tag="TCM_044573" /note="paralog of Thecc1EG023911t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY19448.1" /db_xref="TAIR:AT4G23160.1" /translation="MCFVHKRKVGKLEPTALKCVFAGYSATQKGYKCYHPPSRKYFVS MDVTFRESELYFYTPQSPLQGENKEEEVDVIAPALIQFFSQNPSYDKEQPKTRRLDRP NLKTYTQQEKTNKAIQYVIPDQAPSLSSIPKNGWQEAYHDPKWKEAMVEEMKALAKNQ TWELVTPPLGKKPIGCKWMFTMKHMTDGLVERYKARLVAKGFSQTYELTLIGTYNSDI KNAFLHGNLEEEVYMEIHPGFDDEKTKGKVCRLKKALHGLK" mobile_element 17790532..17790807 /note="source:CACAO_M_E42514_F40_scaffold_5 8 238" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(17798602..17808268) /locus_tag="TCM_044574" /note="dbxref CacaoGD:Thecc1EG044574" mRNA complement(join(17798602..17799516,17799925..17799975, 17800056..17800149,17801739..17801808,17803198..17803289, 17803382..17803455,17804011..17804655,17804755..17804810, 17805475..17805598,17807792..17807886,17807998..17808268)) /locus_tag="TCM_044574" /product="Region-like protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene30532" /inference="similar to AA sequence:Phytozome:POPTR_0010s25280.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04456t00001" mRNA complement(join(17798617..17799516,17799925..17799975, 17800056..17800149,17801739..17801808,17803198..17803289, 17803382..17803455,17804011..17804658,17804755..17804810, 17805475..17805598,17807792..17807886,17808049..17808145)) /locus_tag="TCM_044574" /product="Region-like protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene30532" /inference="similar to AA sequence:Phytozome:POPTR_0008s01290.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00669t00002; alternateUTRof:Thecc1EG044574t2; inference alignment:Newbler:10:TSA:cgbaP2_g04456t00001" mRNA complement(join(17798617..17799516,17799925..17799975, 17800056..17800149,17801739..17801808,17803198..17803289, 17803382..17803455,17804011..17804658,17804755..17804810, 17805475..17805598,17807792..17807886,17807998..17808134)) /locus_tag="TCM_044574" /product="Region-like protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene30532" /inference="similar to AA sequence:Phytozome:POPTR_0008s01290.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00669t00001; inference alignment:Newbler:10:TSA:cgbaP2_g04456t00001" mRNA complement(join(17798617..17799516,17799925..17799975, 17800056..17800149,17801739..17801808,17803198..17803289, 17803382..17803455,17804011..17804658,17804755..17804810, 17805475..17805598,17806480..17806583,17807792..17807829)) /locus_tag="TCM_044574" /product="Region-like protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene30532" /inference="similar to AA sequence:Phytozome:POPTR_0008s01290.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00669t00003; alternateUTRof:Thecc1EG044574t2; inference alignment:Newbler:10:TSA:cgbaP2_g04456t00001" mRNA complement(join(17798623..17799516,17799925..17799975, 17800056..17800146,17801739..17801808,17803198..17803289, 17803382..17803455,17804011..17804658,17804755..17804810, 17805475..17805598,17807792..17807886,17808049..17808142)) /locus_tag="TCM_044574" /product="Region-like protein isoform 5" /inference="alignment:exonerate-protein:2:frave:gene30532" /inference="similar to AA sequence:Phytozome:POPTR_0010s25280.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15531t00001; inference alignment:Newbler:10:TSA:cgbaP2_g04456t00001" mRNA complement(join(17798637..17799516,17799925..17799975, 17800056..17800146,17801739..17801808,17803198..17803289, 17803382..17803455,17804011..17804655,17804755..17804810, 17805475..17805598,17807792..17807886,17807998..17808156)) /locus_tag="TCM_044574" /product="Region-like protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene30532" /inference="similar to AA sequence:Phytozome:POPTR_0010s25280.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5260t4; inference alignment:Newbler:10:TSA:cgbaP2_g04456t00001" CDS complement(join(17798815..17799516,17799925..17799975, 17800056..17800146,17801739..17801808,17803198..17803289, 17803382..17803455,17804011..17804655,17804755..17804810, 17805475..17805511)) /locus_tag="TCM_044574" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Region-like protein isoform 3" /protein_id="EOY19451.1" /db_xref="Phytozome:POPTR_0010s25280.1" /db_xref="TAIR:AT5G18440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVH9" /translation="MTGTKEILQSGQGLADHDNYHEYCRLLGRFRGFQSSSAVENQCN NNMLMMQPQMAIFNPQLPIPLSNNSSAMSLLNNVGFMNGASQLLPSQNNHLGVPQFGP IFPNLNNVSMFQQLHGQFNNPLQSPNQPNWLNLPQQLNQNNMGLTNGQHQQQQQLFLQ NQLQSIGQLLNQIPNLSQFVSGGQTMGCLNPAGVPPNPQFGFMQQNQIQQQANQSQQN LANVNASKPSSSAAGAQVLGGPSFRKPMGSPGKSGQNLNNFPGRNVARDSKWGFHKSK FQQSRFHQVDNAKRKFASSNGQKKKGQDDERAAKFPHSNSTKPDKEKRKSLALTYTEQ EIRQWREERKKHYPTKTNIKKKLSGKVSDAEVAKLRSEQLKEILAKQAELGVEVAEIP SHYLLGSEKKVNGREENSWPLTKRGRFEKRHDKRVRFDKRDRFSRKRRSTNEESFDGT SVNKRSPTLLQKLLSADIRKDKSHLLQVFRFMVINSFFKDWPEKPLKYPLVVVRDGLS EGEIVREKPLVVGEDKLEVCDKTMIQSIVNGENKDGDDSDNDGDRESKDDNDVNGDED DENKHDTQADQVALYAREEKADSGEGIVRNEEEEGEIID" CDS complement(join(17798815..17799516,17799925..17799975, 17800056..17800149,17801739..17801808,17803198..17803289, 17803382..17803455,17804011..17804655,17804755..17804810, 17805475..17805511)) /locus_tag="TCM_044574" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Region-like protein isoform 1" /protein_id="EOY19449.1" /db_xref="Phytozome:POPTR_0010s25280.1" /db_xref="TAIR:AT5G18440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVH9" /translation="MTGTKEILQSGQGLADHDNYHEYCRLLGRFRGFQSSSAVENQCN NNMLMMQPQMAIFNPQLPIPLSNNSSAMSLLNNVGFMNGASQLLPSQNNHLGVPQFGP IFPNLNNVSMFQQLHGQFNNPLQSPNQPNWLNLPQQLNQNNMGLTNGQHQQQQQLFLQ NQLQSIGQLLNQIPNLSQFVSGGQTMGCLNPAGVPPNPQFGFMQQNQIQQQANQSQQN LANVNASKPSSSAAGAQVLGGPSFRKPMGSPGKSGQNLNNFPGRNVARDSKWGFHKSK FQQSRFHQVDNAKRKFASSNGQKKKGQDDERAAKFPHSNSTKPDKEKRKRSLALTYTE QEIRQWREERKKHYPTKTNIKKKLSGKVSDAEVAKLRSEQLKEILAKQAELGVEVAEI PSHYLLGSEKKVNGREENSWPLTKRGRFEKRHDKRVRFDKRDRFSRKRRSTNEESFDG TSVNKRSPTLLQKLLSADIRKDKSHLLQVFRFMVINSFFKDWPEKPLKYPLVVVRDGL SEGEIVREKPLVVGEDKLEVCDKTMIQSIVNGENKDGDDSDNDGDRESKDDNDVNGDE DDENKHDTQADQVALYAREEKADSGEGIVRNEEEEGEIID" CDS complement(join(17798815..17799516,17799925..17799975, 17800056..17800146,17801739..17801808,17803198..17803289, 17803382..17803455,17804011..17804658,17804755..17804810, 17805475..17805511)) /locus_tag="TCM_044574" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Region-like protein isoform 5" /protein_id="EOY19453.1" /db_xref="Phytozome:POPTR_0010s25280.1" /db_xref="TAIR:AT5G18440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVH9" /translation="MTGTKEILQSGQGLADHDNYHEYCRLLGRFRQGFQSSSAVENQC NNNMLMMQPQMAIFNPQLPIPLSNNSSAMSLLNNVGFMNGASQLLPSQNNHLGVPQFG PIFPNLNNVSMFQQLHGQFNNPLQSPNQPNWLNLPQQLNQNNMGLTNGQHQQQQQLFL QNQLQSIGQLLNQIPNLSQFVSGGQTMGCLNPAGVPPNPQFGFMQQNQIQQQANQSQQ NLANVNASKPSSSAAGAQVLGGPSFRKPMGSPGKSGQNLNNFPGRNVARDSKWGFHKS KFQQSRFHQVDNAKRKFASSNGQKKKGQDDERAAKFPHSNSTKPDKEKRKSLALTYTE QEIRQWREERKKHYPTKTNIKKKLSGKVSDAEVAKLRSEQLKEILAKQAELGVEVAEI PSHYLLGSEKKVNGREENSWPLTKRGRFEKRHDKRVRFDKRDRFSRKRRSTNEESFDG TSVNKRSPTLLQKLLSADIRKDKSHLLQVFRFMVINSFFKDWPEKPLKYPLVVVRDGL SEGEIVREKPLVVGEDKLEVCDKTMIQSIVNGENKDGDDSDNDGDRESKDDNDVNGDE DDENKHDTQADQVALYAREEKADSGEGIVRNEEEEGEIID" CDS complement(join(17798815..17799516,17799925..17799975, 17800056..17800149,17801739..17801808,17803198..17803289, 17803382..17803455,17804011..17804658,17804755..17804810, 17805475..17805511)) /locus_tag="TCM_044574" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Region-like protein isoform 2" /protein_id="EOY19450.1" /db_xref="Phytozome:POPTR_0008s01290.1" /db_xref="TAIR:AT5G18440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVH9" /translation="MTGTKEILQSGQGLADHDNYHEYCRLLGRFRQGFQSSSAVENQC NNNMLMMQPQMAIFNPQLPIPLSNNSSAMSLLNNVGFMNGASQLLPSQNNHLGVPQFG PIFPNLNNVSMFQQLHGQFNNPLQSPNQPNWLNLPQQLNQNNMGLTNGQHQQQQQLFL QNQLQSIGQLLNQIPNLSQFVSGGQTMGCLNPAGVPPNPQFGFMQQNQIQQQANQSQQ NLANVNASKPSSSAAGAQVLGGPSFRKPMGSPGKSGQNLNNFPGRNVARDSKWGFHKS KFQQSRFHQVDNAKRKFASSNGQKKKGQDDERAAKFPHSNSTKPDKEKRKRSLALTYT EQEIRQWREERKKHYPTKTNIKKKLSGKVSDAEVAKLRSEQLKEILAKQAELGVEVAE IPSHYLLGSEKKVNGREENSWPLTKRGRFEKRHDKRVRFDKRDRFSRKRRSTNEESFD GTSVNKRSPTLLQKLLSADIRKDKSHLLQVFRFMVINSFFKDWPEKPLKYPLVVVRDG LSEGEIVREKPLVVGEDKLEVCDKTMIQSIVNGENKDGDDSDNDGDRESKDDNDVNGD EDDENKHDTQADQVALYAREEKADSGEGIVRNEEEEGEIID" CDS complement(join(17798815..17799516,17799925..17799975, 17800056..17800149,17801739..17801808,17803198..17803289, 17803382..17803455,17804011..17804658,17804755..17804810, 17805475..17805511)) /locus_tag="TCM_044574" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Region-like protein isoform 2" /protein_id="EOY19452.1" /db_xref="Phytozome:POPTR_0008s01290.1" /db_xref="TAIR:AT5G18440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVH9" /translation="MTGTKEILQSGQGLADHDNYHEYCRLLGRFRQGFQSSSAVENQC NNNMLMMQPQMAIFNPQLPIPLSNNSSAMSLLNNVGFMNGASQLLPSQNNHLGVPQFG PIFPNLNNVSMFQQLHGQFNNPLQSPNQPNWLNLPQQLNQNNMGLTNGQHQQQQQLFL QNQLQSIGQLLNQIPNLSQFVSGGQTMGCLNPAGVPPNPQFGFMQQNQIQQQANQSQQ NLANVNASKPSSSAAGAQVLGGPSFRKPMGSPGKSGQNLNNFPGRNVARDSKWGFHKS KFQQSRFHQVDNAKRKFASSNGQKKKGQDDERAAKFPHSNSTKPDKEKRKRSLALTYT EQEIRQWREERKKHYPTKTNIKKKLSGKVSDAEVAKLRSEQLKEILAKQAELGVEVAE IPSHYLLGSEKKVNGREENSWPLTKRGRFEKRHDKRVRFDKRDRFSRKRRSTNEESFD GTSVNKRSPTLLQKLLSADIRKDKSHLLQVFRFMVINSFFKDWPEKPLKYPLVVVRDG LSEGEIVREKPLVVGEDKLEVCDKTMIQSIVNGENKDGDDSDNDGDRESKDDNDVNGD EDDENKHDTQADQVALYAREEKADSGEGIVRNEEEEGEIID" CDS complement(join(17798815..17799516,17799925..17799975, 17800056..17800149,17801739..17801808,17803198..17803289, 17803382..17803455,17804011..17804658,17804755..17804810, 17805475..17805511)) /locus_tag="TCM_044574" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Region-like protein isoform 2" /protein_id="EOY19454.1" /db_xref="Phytozome:POPTR_0008s01290.1" /db_xref="TAIR:AT5G18440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVH9" /translation="MTGTKEILQSGQGLADHDNYHEYCRLLGRFRQGFQSSSAVENQC NNNMLMMQPQMAIFNPQLPIPLSNNSSAMSLLNNVGFMNGASQLLPSQNNHLGVPQFG PIFPNLNNVSMFQQLHGQFNNPLQSPNQPNWLNLPQQLNQNNMGLTNGQHQQQQQLFL QNQLQSIGQLLNQIPNLSQFVSGGQTMGCLNPAGVPPNPQFGFMQQNQIQQQANQSQQ NLANVNASKPSSSAAGAQVLGGPSFRKPMGSPGKSGQNLNNFPGRNVARDSKWGFHKS KFQQSRFHQVDNAKRKFASSNGQKKKGQDDERAAKFPHSNSTKPDKEKRKRSLALTYT EQEIRQWREERKKHYPTKTNIKKKLSGKVSDAEVAKLRSEQLKEILAKQAELGVEVAE IPSHYLLGSEKKVNGREENSWPLTKRGRFEKRHDKRVRFDKRDRFSRKRRSTNEESFD GTSVNKRSPTLLQKLLSADIRKDKSHLLQVFRFMVINSFFKDWPEKPLKYPLVVVRDG LSEGEIVREKPLVVGEDKLEVCDKTMIQSIVNGENKDGDDSDNDGDRESKDDNDVNGD EDDENKHDTQADQVALYAREEKADSGEGIVRNEEEEGEIID" mobile_element 17809537..17809627 /note="source:scaffold_5_CACTA_0586 8194 8297" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17810080..17810562) /note="source:CACAO_on_E732_scaffold_9 3465 3929" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(17810697..17810770) /note="source:CACAO_on_E732_scaffold_9 3388 3467" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(17810776..17814108) /note="source:CACAO_on_E732_scaffold_9 138 3470" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 17819663..17820038 /note="source:CACAO_M_E59164_F88_scaffold_9 8133 8508" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17820040..17820519 /note="source:CACAO_M_E59164_F88_scaffold_9 9700 10185" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17820707..17821366 /note="source:CACAO_M_E59164_F88_scaffold_9 10169 10831" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17821365..17821902 /note="source:INTACT88_F12_scaffold_4-int 13450 13988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17823019..17824838) /note="source:CACAO_M_S_E119572_F76_scaffold_9 302 2131" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17829493..17832062 /locus_tag="TCM_044576" /note="dbxref CacaoGD:Thecc1EG044576" mRNA join(17829493..17829811,17829931..17830218, 17831793..17832062) /locus_tag="TCM_044576" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS join(17829570..17829811,17829931..17830135) /locus_tag="TCM_044576" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19455.1" /translation="MSRFVPHKIYNISDVVEIFVYFLYDNFIHNLICLQLIILIINSH GNYQLCTTYFRYCIQLIIKDNTAQMSLVAFGWPVENWGIKTGFANYKIFDSADLKDQE WNTTIVATTSKSSTPSPLTLGSSAFKATTEKPEEQLSPTPIKMEMS" mobile_element complement(17833639..17836431) /note="source:CACAO_M_E71453_F87_scaffold_10 1 2793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17836396..17836439 /note="source:INTACT567_F258_scaffold_9-int 9232 9275" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17849313..17862639 /locus_tag="TCM_044579" /note="dbxref CacaoGD:Thecc1EG044579" mRNA join(17849313..17850191,17850751..17850954, 17856331..17856424,17857449..17857506,17857606..17857675, 17860426..17860561,17860647..17860731,17862049..17862102, 17862256..17862639) /locus_tag="TCM_044579" /product="EAP30/Vps36 family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003578" /inference="similar to AA sequence:ricco:29842.m003578" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06379t00001" mRNA join(17849369..17850191,17850751..17850954, 17856331..17856424,17860426..17860453) /locus_tag="TCM_044579" /product="EAP30/Vps36 family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene22472" /inference="alignment:exonerate- protein:2:ricco:29842.m003578" /inference="similar to AA sequence:ricco:29842.m003578" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7915t2; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7915t4; inference alignment:Newbler:10:TSA:cgbaB_g06379t00001" CDS join(17849514..17850191,17850751..17850954, 17856331..17856424,17857449..17857506,17857606..17857675, 17860426..17860561,17860647..17860731,17862049..17862102, 17862256..17862265) /locus_tag="TCM_044579" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003578" /codon_start=1 /product="EAP30/Vps36 family protein isoform 1" /protein_id="EOY19456.1" /db_xref="TAIR:AT5G04920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FF81" /translation="MANFFSKAEVTSSGRPVLLRSEVECHLLSSVDLEPEDHHNFSPL KSGLLILTTHRLLWLPSSSASTPTSAAAIPLPAISHIFSSKKSLKSMFHSPRIRFQVL VSPDGRVFDPGSGSGSGSGLGSRSVVLTAVVRGKGDCDGFLGKFWDSWRARAWETNET SGSGSSSVSGSGTGTGTGTGTGGGLYSSDGSVRMVGVAGILRKEQELWESTDKSLQDA FQDLNALMSKAKEMVMLAEKMRQKLLSGTNSQASATNDEDMGSKEEMQDWLLSVGIIS PVTKESAGALYHQQLSRQLADFVRTPLERAGGMINLIDVYCLFNRARGTELISPDDML QACSLWEKFDVPVMLRKFDSGVMVIQNKSHSDEEVFVRIKSLVTKPEALRSGISPSDA AMTLGIAPAMAKEHLLTAESTGLLCRDVSPDGFRFYINLFPEIDPRDVYLVKDYGICD TWIKAVSTSGLR" CDS join(17849514..17850191,17850751..17850954, 17856331..17856424,17860426..17860436) /locus_tag="TCM_044579" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003578" /codon_start=1 /product="EAP30/Vps36 family protein isoform 2" /protein_id="EOY19457.1" /db_xref="TAIR:AT5G04920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FF81" /translation="MANFFSKAEVTSSGRPVLLRSEVECHLLSSVDLEPEDHHNFSPL KSGLLILTTHRLLWLPSSSASTPTSAAAIPLPAISHIFSSKKSLKSMFHSPRIRFQVL VSPDGRVFDPGSGSGSGSGLGSRSVVLTAVVRGKGDCDGFLGKFWDSWRARAWETNET SGSGSSSVSGSGTGTGTGTGTGGGLYSSDGSVRMVGVAGILRKEQELWESTDKSLQDA FQDLNALMSKAKEMVMLAEKMRQKLLSGTNSQASATNDEDMGSKEEMQDWLLSVGIIS PVTKESAGALYHQQLSRQLADFVRTPLERAGGMINLIDVYCLFNRARGTGFC" mobile_element complement(17863496..17863657) /note="source:scaffold_9_CACTA_0946 17767 17957" /mobile_element_type="transposon:TIR/CACTA" gene complement(17863702..17866666) /locus_tag="TCM_044581" /note="dbxref CacaoGD:Thecc1EG044581" mRNA complement(join(17863702..17864262,17865507..17865611, 17865689..17865785,17866365..17866666)) /locus_tag="TCM_044581" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027313001" /inference="similar to AA sequence:Phytozome:Glyma06g47280.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12606t00001" mRNA complement(join(17863760..17864262,17865507..17865611, 17865692..17865785,17866365..17866644)) /locus_tag="TCM_044581" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027313001" /inference="similar to AA sequence:Phytozome:Glyma06g47280.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg4973t2; inference alignment:Newbler:10:TSA:cgbaL_g12606t00001" mRNA complement(join(17863760..17864262,17865507..17865611, 17865719..17865785,17866365..17866609)) /locus_tag="TCM_044581" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027313001" /inference="similar to AA sequence:Phytozome:Glyma06g47280.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8216t2; inference alignment:Newbler:10:TSA:cgbaL_g12606t00001" CDS complement(join(17863993..17864262,17865507..17865611, 17865719..17865785,17866365..17866552)) /locus_tag="TCM_044581" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY19460.1" /db_xref="Phytozome:Glyma06g47280.1" /db_xref="TAIR:AT5G04910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PE01" /translation="MEDFEKKVSIKDSMEIEGEEEGSGGGGCSSSSSSSKNEEILQLL RKFLDIQQRRAQAYAKLKTGFSEYMNSGGELAYQQLCSEITVLEMESLFLSPDYCRVD LAQLLRSVQTQEKQKLHLTATIQLLKKAGRPSERLVSHENCLFKKPMEHECVHVHEIT EASGTEDAEANAEYDNALKEAIRGVQDAVTAINEHLEEVRYEIAALEAE" CDS complement(join(17863993..17864262,17865507..17865611, 17865692..17865785,17866365..17866552)) /locus_tag="TCM_044581" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY19459.1" /db_xref="Phytozome:Glyma06g47280.1" /db_xref="TAIR:AT5G04910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PE01" /translation="MEDFEKKVSIKDSMEIEGEEEGSGGGGCSSSSSSSKNEEILQLL RKFLDIQQRRAQAYAKLKTGFSEYMNSGGELAYQQLCSEITVKFKDCSKQVLEMESLF LSPDYCRVDLAQLLRSVQTQEKQKLHLTATIQLLKKAGRPSERLVSHENCLFKKPMEH ECVHVHEITEASGTEDAEANAEYDNALKEAIRGVQDAVTAINEHLEEVRYEIAALEAE " CDS complement(join(17863993..17864262,17865507..17865611, 17865689..17865785,17866365..17866552)) /locus_tag="TCM_044581" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19458.1" /db_xref="Phytozome:Glyma06g47280.1" /db_xref="TAIR:AT5G04910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PE01" /translation="MEDFEKKVSIKDSMEIEGEEEGSGGGGCSSSSSSSKNEEILQLL RKFLDIQQRRAQAYAKLKTGFSEYMNSGGELAYQQLCSEITVKFKDCSKQVVLEMESL FLSPDYCRVDLAQLLRSVQTQEKQKLHLTATIQLLKKAGRPSERLVSHENCLFKKPME HECVHVHEITEASGTEDAEANAEYDNALKEAIRGVQDAVTAINEHLEEVRYEIAALEA E" mobile_element 17866794..17867729 /note="source:CACAO_M_E49279_F74_scaffold_6 996 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17867013..17915155) /locus_tag="TCM_044582" /note="dbxref CacaoGD:Thecc1EG044582" mRNA complement(join(17867013..17867278,17885998..17886616, 17886705..17886787,17887847..17888062,17893395..17893749, 17894256..17894466,17895487..17895642,17896552..17896651, 17896785..17896839,17896926..17897046,17897753..17897889, 17899037..17899138,17899227..17899391,17899479..17899560, 17900147..17900304,17900424..17900549,17901919..17902008, 17902126..17902196,17902363..17902456,17902670..17902756, 17903543..17903591,17904585..17904673,17904791..17904856, 17906392..17906454,17906554..17906662,17907915..17907985, 17909174..17909260,17909462..17909560,17909666..17909710, 17913611..17913712,17913788..17913853,17913987..17914056, 17914478..17915155)) /locus_tag="TCM_044582" /product="DNA gyrase subunit A" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25320.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s25320.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc512t8" mobile_element complement(17867776..17868234) /note="source:CACAO_PIF_E119_scaffold_3 1795 2267" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(17868243..17869188) /locus_tag="TCM_044583" /note="dbxref CacaoGD:Thecc1EG044583" mRNA complement(join(17868243..17868985,17869081..17869188)) /locus_tag="TCM_044583" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010352t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(17868709..17868985,17869081..17869169)) /locus_tag="TCM_044583" /note="paralog of Thecc1EG010352t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19462.1" /translation="MVKFNVDGASRGNPSEARIGGVLRDDGGKMWGNANCIIVENNSE IAVKWAREPSTTPWTYITTMMHMEFFKSQLKNWSFLKIQRLVNKVVDSLAKAEVERED EFLWVIIEDGEDGPILLKD" mobile_element complement(17869925..17870802) /note="source:CACAO_M_E11307_F106_scaffold_2 1158 2033" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17870803..17871935) /note="source:CACAO_on_E745_scaffold_10 1 1133" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(17871936..17873107) /note="source:CACAO_M_E42343_F106_scaffold_5 12076 13244" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17876353..17877018 /note="source:scaffold_2_CACTA_0253 7254 7927" /mobile_element_type="transposon:TIR/CACTA" gene 17876823..17877382 /locus_tag="TCM_044584" /note="dbxref CacaoGD:Thecc1EG044584" mRNA 17876823..17877382 /locus_tag="TCM_044584" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage" CDS 17876973..17877269 /locus_tag="TCM_044584" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19463.1" /translation="MLNCYNSAQGSMWRKATTLSYSRPQCRGSQDCNAEENKATMLVK GRAPYKFTRLEHYNAKKGRTRCYCSKKGSSAKLGNYGHDAGRFSKNKNLTRFWK" mobile_element complement(17880313..17880856) /note="source:CACAO_on_SS_E135_scaffold_10 6742 7284" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17881345..17882190) /note="source:CACAO_on_SS_E135_scaffold_10 5495 6279" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17884871..17885351) /note="source:CACAO_on_E732_scaffold_9 3464 3925" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(17885487..17888763) /note="source:CACAO_on_E732_scaffold_9 138 3468" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS complement(join(17886206..17886616,17886705..17886787, 17887847..17888062,17893395..17893749,17894256..17894466, 17895487..17895642,17896552..17896651,17896785..17896839, 17896926..17897046,17897753..17897889,17899037..17899138, 17899227..17899391,17899479..17899560,17900147..17900304, 17900424..17900549,17901919..17902008,17902126..17902196, 17902363..17902456,17902670..17902756,17903543..17903591, 17904585..17904673,17904791..17904856,17906392..17906454, 17906554..17906662,17907915..17907985,17909174..17909260, 17909462..17909560,17909666..17909710,17913611..17913712, 17913788..17913853,17913987..17914056,17914478..17914848)) /locus_tag="TCM_044582" /codon_start=1 /product="DNA gyrase subunit A" /protein_id="EOY19461.1" /db_xref="Phytozome:POPTR_0010s25320.1" /db_xref="TAIR:AT3G10690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5YLB5" /translation="MSLSYTLRFSFLRHNLYLAPSGVSALRPNLSHLRFLSVTPTRPL LSPVKARRAGGQEDEDGAGNGSLTAIVNDGSGGGGDGRVVPTELHKEATESYMAYALS VLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGEVLGKFHPHGDTAV YDSLVRMAQDFSLRFPLIQGHGNFGSIDADPPAAMRYTECRLEALTEAILLADLEQDT VDFVPNFDNSHKEPSLLPARLPTLLLNGTSGIAVGMATNIPPHNLGELVDVLCALIQN PEASLQELLEYMPGPDFPTGGLIMGNLGILEAYRTGRGRIVVRGKADIELLDSKTKRS AVIIKEIPYQTNKSSLVEKIAELVENKSLEGISDIRDESDRSGMRVVIELKRGSDPSI VLNNLYRLTALQSSFSCNMVGILDGQPKQMGLKELLQSFLDFRCSVVERRARYKLSQA QDRRHIVEGIVVGLDNLDSVIDIIREASSNAAASAGLRNEFNLSDKQAEAILDINLRR LNLLERKKFVGESRSLMEQISKLTELLSSRKNILQLIEQEAIELKSKFSSPRRSILED SDGGQLEDIDVIPNEEMLLAFSEKGYVKRMKPNTFNLQNRGTIGKSVGKLRFNDAMSD FIVCRAHDHVLYFSDKGIVYTARAYKIPESSRTAAGTPLVQIISLSEGERITSIISVS EFAEDQFLAMLTVNGYIKKVSLNYFSAIRSTGIIAIQLVPGDELKWVRCCINDDLVAM ASQNGMVILSSCGIIRALSRNTRGAIAMRLKEGDKMASMDIIPAPRHKDLDKAEEDSM NNNKGGSGPWLLFVSENGYGKRVPLSSFKRSPLNRVGLIGYKFSSEDRLAAVFVVGFS LAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYARGVILMRLEYAGKIQSASLISAS AHEAEELLPDMLLEESATNVVATENISEASAGVIVKVYKTECILVDSNIVAIKSIDLD QYSKADFDNNIRRETKIMLLFSHPHILNANCSFIVDGQRFWVGLPSVEERFKVNKIPK KGVDVDGESWFQLVESKGLLCGSSMKDRFELELIFLNKSKEELIVKWSHFSGKTIIPK KVGETNRTSNSDGTNLNSPEGIGKEADEEESSIEGIVGDKPRVEGARDGIYIRVKVPS TDKPRYRTRKEDIATNMLGVCTPNMQFVFVLPGWEGSVADSRVLRDALRRRNGLKVPH GTHTSGFGWDDQKNMVVADDPVWESYIQSHKEVAPFRIKSFPFFNELSLIYARDRAIG KDAQTAIDILEEMQDCNDTINVETEGENLARYSFDDEDFSNIQPQTSAPKSETTSVRK KKRQNETSDPITSESIITAATILGENIKEVGIEFSKSVGAEVNIQQKA" mobile_element complement(17890278..17890317) /note="source:CACAO_PIF_E8_scaffold_1 1 40" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(17891990..17892936) /note="source:CACAO_Helitron_E242_scaffold_9 181 1116" /mobile_element_type="transposon:Helitron" mobile_element 17911026..17911389 /note="source:scaffold_4_CACTA_0482 5967 6324" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17918167..17922847 /note="source:CACAO_M_E12058_F3_scaffold_2 1037 5757" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17921069..17942487) /locus_tag="TCM_044585" /note="dbxref CacaoGD:Thecc1EG044585" mRNA complement(join(17921069..17921384,17932903..17933384, 17933458..17933812,17933941..17934188,17934300..17934526, 17934609..17934974,17937700..17937807,17942443..17942487)) /locus_tag="TCM_044585" /product="Cytochrome P450" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037154001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043636t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s02630.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc522t1" mobile_element 17922848..17925799 /note="source:CACAO_M_S_E86211_F313_scaffold_7 1 3010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17925800..17928272 /note="source:CACAO_M_E12058_F3_scaffold_2 5753 8216" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(17932959..17933384,17933458..17933812, 17933941..17934188,17934300..17934526,17934609..17934903)) /locus_tag="TCM_044585" /note="paralog of Thecc1EG043636t1" /codon_start=1 /product="Cytochrome P450" /protein_id="EOY19464.1" /db_xref="Phytozome:POPTR_0008s02630.1" /db_xref="TAIR:AT5G24910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL41" /translation="MEMQSVLVKVWVTSLLLGIFTIIIHLFDTLILKPGRLRSRLQKQ GIQSPPSSMLLGNLRDIKKTRLKASKSLEEGEQVITHNCSSLVFPYFDKWREQYGSTF MFALGNTQILHISNPDLLKEISISTSLDLGRPSYQQKALGPLLGQGIVASNGALWAHQ RKILAPEFYMERVKGMVKLMVESSIEIVNLWNSKIDSEGGVADIKIDDYMRSFSGDVI SRACFGSNYSKGEEIFSKIRALIDYMPARVLYLSIPGMRYLPIKINRETWRLEKEIRT LILQVVKEREEGTSEKDLLQMILEAAKSSDSGQDAANRFIVDNCKNIYLAGYETSAVT ATWTLMLLALYPEWQEKVREEILDICRGELPNADVLLRMKTLTMVINEALRLYPPVSL MTREALEDIKLGNINVPKGVNLWILVVTLHKDPNIWGAEADKFNPERFANGVTGACKF PHVYMPFGTGSHTCLGQYFAMAELKILLSLLLSNFSFSLSPRYRHSPAMNLIMEPQYG VDLLVRKL" mobile_element complement(17938239..17941342) /note="source:CACAO_M_E71449_F15_scaffold_10 1 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17940936..17949889 /locus_tag="TCM_044587" /note="dbxref CacaoGD:Thecc1EG044587" mRNA join(17940936..17941333,17943803..17944054, 17948925..17949178,17949666..17949889) /locus_tag="TCM_044587" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g019880.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc2Loc4114t2_G2" CDS join(17941209..17941333,17943803..17944054, 17948925..17949178,17949666..17949778) /locus_tag="TCM_044587" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19465.1" /translation="MIAHRKGKKLICKPYGVPVGILDNECQPRRRDDCHGPEGGSGIL ILLSNICTSSVYKSTTEKFCTNAQQSHQIKGGGPQAPRSALPIGADPIANPLRVTPVN IDKDWLHAVLAVSYAKELDQILSSGDRENEIDLNEEVYQEDMSISINITPSEELDNFT VLASGDYEEVNLLIEDEKDDMQGDEDEEDDMEGDKDEDEDEVEDEDKETFGAFAEQVD NETSTHDSRRSTFIDLGASVDDTSSRSKV" mobile_element 17941471..17941677 /note="source:scaffold_5_CACTA_0613 48 221" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17941749..17942582 /note="source:scaffold_5_CACTA_0613 207 1421" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17942745..17942898 /note="source:scaffold_5_CACTA_0613 524 691" /mobile_element_type="transposon:TIR/CACTA" assembly_gap 17951186..17961185 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 17961205..17962880 /note="source:CACAO_M_E14312_F12_scaffold_3 4935 6593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17963036..17963283 /note="source:CACAO_M_E3884_F22_scaffold_1 22839 23085" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17967720..17971867 /locus_tag="TCM_044588" /note="dbxref CacaoGD:Thecc1EG044588" mRNA join(17967720..17967985,17968081..17968163, 17968376..17968384,17968480..17968568,17968670..17968794, 17968978..17969054,17970780..17971867) /locus_tag="TCM_044588" /product="Integrase-type DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01260.1.2" /inference="similar to AA sequence:ricco:30069.m000440" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc728t1" CDS join(17967774..17967985,17968081..17968163, 17968376..17968384,17968480..17968568,17968670..17968794, 17968978..17969054,17970780..17971426) /locus_tag="TCM_044588" /note="dbxref ricco:30069.m000440" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein, putative" /protein_id="EOY19466.1" /db_xref="TAIR:AT3G54320.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVF9" /translation="MKRSPASSSSSSPSSPSSSSSSCLGPDTPHLPSSEKPKAKRARK DQNSERCLNANSPNSGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQNKKGRQVYLG AYDSEEAAARTYDLAALKYWGPETTLNFPIDRYEKEMEEMKKVTKEEYLASLRRRSSG FSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYNTQEEAAAAYDMAALEYRGT NAVTNFDISHYIERLKQKGILFVDQTQEQIPHSSGAERGGAETAQPQQQQQQQQQQQQ QEQLQQQGEEEEADPQHFQYMQMQQLPLCIDNASMVGMETADSNELAWSFCMDSGMTS LLVPDFPLGKTGGLPNLFDDTGFEDNIDLIFDVGPNENEGVGQVGVSMNMEVDMGKER LLPSSDSPFSSTTTVSCNYSV" gene 17973200..17988418 /locus_tag="TCM_044589" /note="dbxref CacaoGD:Thecc1EG044589" mRNA join(17973200..17973821,17973942..17974217, 17975789..17975933,17976042..17976101,17976203..17976298, 17977821..17977869,17977957..17978237,17981597..17981737, 17981824..17981994,17984438..17984695,17984787..17984935, 17985406..17985942,17986801..17987074,17987472..17988418) /locus_tag="TCM_044589" /product="Ubiquitin carboxyl-terminal hydrolase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001899001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015615t4" /inference="similar to AA sequence:Phytozome:POPTR_0006s03230.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc16t2" mRNA join(17973530..17973821,17973942..17974217, 17975789..17975933,17976042..17976101,17976203..17976298, 17977821..17978237,17981597..17981737,17981824..17981994, 17984438..17984695,17984787..17984935,17985406..17985942, 17986801..17987074,17987472..17988156) /locus_tag="TCM_044589" /product="Ubiquitin carboxyl-terminal hydrolase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001899001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015615t4" /inference="similar to AA sequence:Phytozome:POPTR_0006s03230.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5004t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc16t2" CDS join(17973685..17973821,17973942..17974217, 17975789..17975933,17976042..17976101,17976203..17976298, 17977821..17978237,17981597..17981737,17981824..17981994, 17984438..17984695,17984787..17984935,17985406..17985942, 17986801..17987074,17987472..17987651) /locus_tag="TCM_044589" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015615t4" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase isoform 2" /protein_id="EOY19468.1" /db_xref="Phytozome:POPTR_0006s03230.1" /db_xref="TAIR:AT2G40930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDU9" /translation="MTEVATSTATTKELSPEEERVLIRDIAITAEANTKEGDSFFLIT QKWWQHWIDYVNQEQQLNTNNNTNEGSSSLAGNSDSPRLTTLKRPSGIDNSDLISDGP SEDSSPGSGIEIHDTLLEGRDYVLLPQQVWNQLYSWYGGGPTLSRKVIDSGLSQTEFA VEVYPLRLQLLVTPKGDRSTIRISKKETIGELHRRACEIFYLNLEQVCIWDYYGHRKH ALMNDMDKTLDDANIQMDQDILVEVLNNVNGTALSGGISFPDNGFADKEATSVLLEPS KSSLSIAGGLSANKIASRGYSAEHMQSQTLSYPGRELDNTYANSGVITRGASGGLTGL LNLGNTCFMNSAIQCLVHTPEFARYFREDYHQEINWQNPLGMVGELALAFGELLRKLW APGRTPVAPRPFKAKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYINSR DADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSL PLQFTITRTMTITVFTCDGSALPSTCTVTVPKQGRYRDLIQALSNACSLKQTEEIKLV EIRNHLIHRFLDDSYISLSTIKDDDHLAAYKIQKSVKGNVFLQLIHRRQEQETSDAQR WKPFGTPLISSLSCDDVIASGDIQTIVQTMLTPLLKESLEYTDNSDPSTSVAATDPSD RNSGEVDTNRASTSVNKKVLPKLPLQLVDESMTCIDLSVGDEKAVNLSASLPIVVYLD WSSKLLEKYNMHYLENLPEVFKYGPITKKARTEPLSLYTCLEAFLREEPLVPEDMWYC PQCKEQRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYVAD KRSSRSQLYDLYALINHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEEDVKSAA AYVLFYRRVKSDASASNAAGSGRVREKTSSKH" CDS join(17973685..17973821,17973942..17974217, 17975789..17975933,17976042..17976101,17976203..17976298, 17977821..17977869,17977957..17978237,17981597..17981737, 17981824..17981994,17984438..17984695,17984787..17984935, 17985406..17985942,17986801..17987074,17987472..17987651) /locus_tag="TCM_044589" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015615t4" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase isoform 1" /protein_id="EOY19467.1" /db_xref="Phytozome:POPTR_0006s03230.1" /db_xref="TAIR:AT2G40930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDU9" /translation="MTEVATSTATTKELSPEEERVLIRDIAITAEANTKEGDSFFLIT QKWWQHWIDYVNQEQQLNTNNNTNEGSSSLAGNSDSPRLTTLKRPSGIDNSDLISDGP SEDSSPGSGIEIHDTLLEGRDYVLLPQQVWNQLYSWYGGGPTLSRKVIDSGLSQTEFA VEVYPLRLQLLVTPKGDRSTIRISKKETIGELHRRACEIFYLNLEQVCIWDYYGHRKH ALMNDMDKTLDDANIQMDQDILVEVLNNVNGTALSGGGLSANKIASRGYSAEHMQSQT LSYPGRELDNTYANSGVITRGASGGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED YHQEINWQNPLGMVGELALAFGELLRKLWAPGRTPVAPRPFKAKLARFAPQFSGYNQH DSQELLAFLLDGLHEDLNRVKHKPYINSRDADGRPDEEVADEYWANHIARNDSIIVDV CQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQFTITRTMTITVFTCDGSALPSTCTVT VPKQGRYRDLIQALSNACSLKQTEEIKLVEIRNHLIHRFLDDSYISLSTIKDDDHLAA YKIQKSVKGNVFLQLIHRRQEQETSDAQRWKPFGTPLISSLSCDDVIASGDIQTIVQT MLTPLLKESLEYTDNSDPSTSVAATDPSDRNSGEVDTNRASTSVNKKVLPKLPLQLVD ESMTCIDLSVGDEKAVNLSASLPIVVYLDWSSKLLEKYNMHYLENLPEVFKYGPITKK ARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKEQRQASKKLDLWRLPEVLVIHLKRF SYSRSMKHKLETFVNFPIHDFDLTNYVADKRSSRSQLYDLYALINHYGGMGSGHYTAH IKLLDENRWYNFDDSHISPINEEDVKSAAAYVLFYRRVKSDASASNAAGSGRVREKTS SKH" mRNA join(17976273..17976464,17976668..17976699, 17976754..17976837,17977821..17978237,17981597..17981737, 17981824..17981994,17984438..17984695,17984787..17984935, 17985406..17985942,17986801..17987074,17987472..>17987617) /locus_tag="TCM_044589" /product="Ubiquitin carboxyl-terminal hydrolase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001899001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015615t4" /inference="similar to AA sequence:Phytozome:GSVIVT01001899001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc16t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc16t2" CDS join(17978007..17978237,17981597..17981737, 17981824..17981994,17984438..17984695,17984787..17984935, 17985406..17985942,17986801..17987074,17987472..>17987615) /locus_tag="TCM_044589" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015615t4" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase isoform 3" /protein_id="EOY19469.1" /db_xref="Phytozome:GSVIVT01001899001" /db_xref="TAIR:AT2G40930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U6B4" /translation="MQSQTLSYPGRELDNTYANSGVITRGASGGLTGLLNLGNTCFMN SAIQCLVHTPEFARYFREDYHQEINWQNPLGMVGELALAFGELLRKLWAPGRTPVAPR PFKAKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYINSRDADGRPDEEV ADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQFTITRTM TITVFTCDGSALPSTCTVTVPKQGRYRDLIQALSNACSLKQTEEIKLVEIRNHLIHRF LDDSYISLSTIKDDDHLAAYKIQKSVKGNVFLQLIHRRQEQETSDAQRWKPFGTPLIS SLSCDDVIASGDIQTIVQTMLTPLLKESLEYTDNSDPSTSVAATDPSDRNSGEVDTNR ASTSVNKKVLPKLPLQLVDESMTCIDLSVGDEKAVNLSASLPIVVYLDWSSKLLEKYN MHYLENLPEVFKYGPITKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKEQRQAS KKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYVADKRSSRSQLYD LYALINHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEEDVKSAAAYVLFYRRVK SDASASNAAGS" mobile_element complement(17980370..17980708) /note="source:CACAO_M_E71448_F1_scaffold_10 1 339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17986322..17986408 /note="source:scaffold_10_CACTA_0137 6927 7013" /mobile_element_type="transposon:TIR/CACTA" gene 17988709..17993497 /locus_tag="TCM_044590" /note="dbxref CacaoGD:Thecc1EG044590" mRNA join(17988709..17989727,17991297..17991351, 17991438..17991548,17991664..17991896,17992130..17992337, 17992565..17992624,17992715..17993497) /locus_tag="TCM_044590" /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027353001" /inference="similar to AA sequence:ricco:30226.m002047" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc14819t1" CDS join(17988997..17989727,17991297..17991351, 17991438..17991548,17991664..17991896,17992130..17992337, 17992565..17992624,17992715..17992891) /locus_tag="TCM_044590" /note="dbxref ricco:30226.m002047" /codon_start=1 /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase" /protein_id="EOY19470.1" /db_xref="TAIR:AT3G10660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6AVM3" /translation="MGQEKGKLCDEYEIQDILGRGGFSVVRRGIKIKTDGQKSSQQVA IKTLKRFGTSASTPSGSFRVSAEKSIASMGLPAWNQVSISDALLTNEILVMRKIVENV SPHPNVIDLYDVYEDQSGVHLVLELCSGGELFDRIVAQERYSEAGAAAVVKQIAQGLA ALHQANIVHRDLKPENCLFFNKSDDSTLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPE ALSQGKITFKSDMWSLGVILYILLSGYPPFIAQSNRQKQQMIMAGDYNFDERTWKNIS SSAKHLISNLLQVDSDRRPSAEQLLAHPWVIGDSAKQEQMDAEVVSRLQSFNARRKLR AAAIASVLSSKVLLRTKKLRTLLGSHDLTKEEIDNLKIYFKNICAKGDNATLPEFEEV LKAMNMSSLLPLATRIFDLFDSNRDGTVDMREIVCGFSSLRNSKGDDALRLCFEMYDT DRSGCITREELASMLRALPDDCLPPDITEPGKLDEIFDRMDANSDGKVTFDEFKAAMQ RDSSLQDVVLSSLRQQ" mobile_element complement(17991042..17991169) /note="source:scaffold_7_CACTA_0795 2852 2987" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17991156..17991214) /note="source:scaffold_10_CACTA_0130 10594 10654" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17991298..17991682) /note="source:scaffold_10_CACTA_0130 10254 10593" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17993834..17995267) /note="source:scaffold_10_CACTA_0130 10789 12225" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17995367..17995465) /note="source:scaffold_10_CACTA_0130 10687 10792" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17995486..17997885 /note="source:scaffold_5_CACTA_0584 7145 9499" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17997914..17999007) /note="source:scaffold_10_CACTA_0130 9597 10691" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17999000..17999351) /note="source:scaffold_10_CACTA_0130 5907 6253" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17999969..18000180) /note="source:CACAO_Again_on_S_E225_scaffold_7 735 989" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18000018..18000609) /note="source:CACAO_on_SS_E42_scaffold_2 23886 24473" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18002227..18003238) /note="source:CACAO_Again_on_S_E187_scaffold_5 1 1003" /mobile_element_type="transposon:TIR/hAT" gene complement(18006470..18008476) /locus_tag="TCM_044592" /note="dbxref CacaoGD:Thecc1EG044592" mRNA complement(18006470..18008476) /locus_tag="TCM_044592" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s16570.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015125t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16570.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc2246t1" CDS complement(18006493..18008223) /locus_tag="TCM_044592" /note="paralog of Thecc1EG015125t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY19471.1" /db_xref="Phytozome:POPTR_0011s16570.1" /db_xref="TAIR:AT4G20820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Y11" /translation="MVDPVLTSLLVFVAIKAHIFKVLCTINTATPPPNLHAQLSQLHK MKSAHYSTFAFLFAILFSFSWETSAQSPEKFLHCLSLRSNDSSSISKVIYSQNNYSYS SILESSIQNLRFSTIDIPKPLVIVTPLHASHIQATIQCSKELGLQIRSRSGGHDFEGL SYVSEVPFVLIDLVNLRSIDVNVENGVAWVEAGATIGELYFRIAEKSRTLAFPAGICH TVGVGGHFSGGGYGGLFRKYGLAADNIIDAQLIDANGRILDRQSMGEDLFWAIRGGGG GSYGIVLAWKLKLVPVPATVTVFSITKTLEQNATELIHRWQDVAHKLPDDIFLIVTIT RVNSGQEGKDTIQAAFTALFLGGVDNLISLMEIRFPELGVVKQDCIEMSWIQSLLYLD QFPIERPEILLDRTAVNKTLFKVKSDYVKEPIPKIVFEGMWQKFYEEEGKYGIIFLIP YGGRMDEIPETETPFPHRAGNMYKIIYYVGRAQEENLEFQKYINWIRRIYRHMTPYVS KSPREAYANYRDLDIGVNNKGNTSYAQASTWGFKYFKNNFNKLVRVKTLVDPKNFFRH EQSIPPVSSW" mobile_element complement(18009144..18009872) /note="source:CACAO_MITE_S12_scaffold_1 1 789" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(18009714..18009899) /note="source:CACAO_Again_on_E34_scaffold_1 675 894" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18010760..18023015) /note="source:scaffold_10_CACTA_0130 1 12256" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18022894..18023216) /note="source:CACAO_M_S_E33139_F368_scaffold_4 4810 5188" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18023229..18023842) /note="source:scaffold_1_CACTA_0016 8001 8620" /mobile_element_type="transposon:TIR/CACTA" gene complement(18025267..18028416) /locus_tag="TCM_044594" /note="dbxref CacaoGD:Thecc1EG044594" mRNA complement(join(18025267..18028010,18028271..18028416)) /locus_tag="TCM_044594" /product="SU(VAR)3-9, putative" /inference="alignment:exonerate- protein:2:ricco:29686.m000897" /inference="similar to AA sequence:ricco:29686.m000897" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04283t00001" CDS complement(18025779..18027800) /locus_tag="TCM_044594" /note="dbxref ricco:29686.m000897" /codon_start=1 /product="SU(VAR)3-9, putative" /protein_id="EOY19472.1" /db_xref="TAIR:AT1G73100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FF80" /translation="MEGGLGGNSVPLNSFDKSKVLDVKPLRTLVPLFPDASEGSPFVC VPPNGPFPTGFSPFFPFSGPQGSQSTPDLNQNDFNATAVPIRSFRAEPPASNGQNMSP MDTFGSHKHKSAGSSSVKRKAKRHKDLEFAITALSDFNPGISFSERDDGNRDLVENVL LRFDALRRRLSQMEDAKESHSGIIKRADLKAGNIMMSKGVRTNMKKRIGVVPGVEIGD IFFFRMELCVVGLHSQSMAGIDYMVVKGDSEGEPVALSIVSSGGYDDDAEDPDVLVYS GQGGNANKDKEASDQKLERGNLALERSLHRANEVRVIRGLKDAVHQTSKVYVYDGLFK LQESWMEKGKSGCNMFKYKLVRVPGQTSAFSIWKSIQKWKEGLSSRVGLILPDLTSGA ESTPVSLVNEVDDEKGPAHFTYNPTVKYSKSFKLVQPSFGCKCRDACQAGNSNCSCNQ KNGGDFPYTANGILVCRKPLIYECGPSCLCFRNCKNKVSQTGFKVHLEVFKTRDRGWG LRSWDPIRAGTFICEYAGEVIDEIKARQDRGDGEKNDYVFRTNRLYESFKWNYETGLV GEESSDPTEDFDIPSPLIISAKNSGNVARFMNHSCSPNVFWQPIMYEHNNEAFLHIAF FAKRHIPPMTELTYDYGTPHPDETQSKAAHEKKKCLCGSPKCRGFFIEV" gene complement(18031093..18042452) /locus_tag="TCM_044595" /note="dbxref CacaoGD:Thecc1EG044595" mRNA complement(join(18031093..18032058,18032168..18032240, 18033647..18033708,18033803..18033859,18035794..18035863, 18035983..18036083,18036166..18036240,18036554..18036715, 18036857..18037190,18037877..18038013,18038123..18038368, 18039241..18039400,18040491..18040723,18041594..18042452)) /locus_tag="TCM_044595" /product="Heat shock protein 70 (Hsp 70) family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29724.m000869" /inference="similar to AA sequence:ricco:29724.m000869" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc363t3" CDS complement(join(18031852..18032058,18032168..18032240, 18033647..18033708,18033803..18033859,18035794..18035863, 18035983..18036083,18036166..18036240,18036554..18036715, 18036857..18037190,18037877..18038013,18038123..18038368, 18039241..18039400,18040491..18040723,18041594..18042352)) /locus_tag="TCM_044595" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29724.m000869" /codon_start=1 /product="Heat shock protein 70 (Hsp 70) family protein isoform 1" /protein_id="EOY19473.1" /db_xref="TAIR:AT4G16660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ZFX8" /translation="MRNMLFRVGIFLSLLSLFLIKSESAVSSIDLGSEWMKVAVVNLK PGQSPITIAINEMSKRKSPALVAFQSEARLLAEEAAGIVARYPDKVFSNLRDMIGKPY QDVKRFADSMYLPFDIMEDSRGAARIRVSDDVSYSVEELLGMLLKYAANLAEFHSKVT VKDAVISVPPYFGQAERKGLLAAAELAGINVVSLINEHSGAALQYGIDKNFSNESRHV IFYDMGSSSTYAALVYYSAYNAKEFGKTVSVNQFQVKDVRWDSELGGQNMELRLVEYF ADEFNKQVGNGIDVRKYPKAMAKLKKQVKRTKEILSANTVAPISVESLYDDRDFRSTI TREKFEELCGDLWDKSLLPVKELLKHSGLQTDDIYAVELIGGATRVPKLQVKLQEYFG RKDLDKHLDADEAIVLGAALLAANLSDGIKLNRKLGMVDGSSYSFIVELDGPDLSKYG ATRLLLVPRMKKLPSKIFKSLNHSKDFEVSLAYDHEDLLPPGLSSPIFAQYAVSGLTD AAEKYSSRNLSSPIKTNLHFSLSRSGILSLDQAEAVIQISEWIEVAKRNLTVENTTSA SLNVSVDVGTKNTSEQSNNGLDSDGGISNASNSSEPNTMDLGTERKLKKRTYKIPLKI VEKTMGPGMSLSKESFSDAKRKLEALDKKDAERRRTAELKNNLEEYIYATKEKLETSE DVEKISSIDERQSVIKKLDEVQEWLYTDGEDATATEFQEHLNLLKATADPIFFRLKEL TALPEAVEVARLYVTELQQTIRGWETDKPWLPKDRVDELSVNMDNFKTWLDGKEAERN KTSGFSAPVFTSEEVYEKLFSLQDKAASIKRIPKPKPKVEKPIKNETETNSENANTSD STPEKDTSQNDKPAGDSDSSTNEEVNVESEPHDEL" mRNA complement(join(18032215..18032240,18033647..18033708, 18033803..18033859,18035794..18035863,18035983..18036083, 18036166..18036240,18036554..18037190,18037877..18038013, 18038123..18038368,18039241..18039400,18040491..18040723, 18041594..18042323)) /locus_tag="TCM_044595" /product="Heat shock protein 70 (Hsp 70) family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29724.m000869" /inference="similar to AA sequence:ricco:29724.m000869" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc429t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc363t3" CDS complement(join(18036848..18037190,18037877..18038013, 18038123..18038368,18039241..18039400,18040491..18040723, 18041594..18042247)) /locus_tag="TCM_044595" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29724.m000869" /codon_start=1 /product="Heat shock protein 70 (Hsp 70) family protein isoform 2" /protein_id="EOY19474.1" /db_xref="TAIR:AT4G16660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ZFX8" /translation="MKVAVVNLKPGQSPITIAINEMSKRKSPALVAFQSEARLLAEEA AGIVARYPDKVFSNLRDMIGKPYQDVKRFADSMYLPFDIMEDSRGAARIRVSDDVSYS VEELLGMLLKYAANLAEFHSKVTVKDAVISVPPYFGQAERKGLLAAAELAGINVVSLI NEHSGAALQYGIDKNFSNESRHVIFYDMGSSSTYAALVYYSAYNAKEFGKTVSVNQFQ VKDVRWDSELGGQNMELRLVEYFADEFNKQVGNGIDVRKYPKAMAKLKKQVKRTKEIL SANTVAPISVESLYDDRDFRSTITREKFEELCGDLWDKSLLPVKELLKHSGLQTDDIY AVELIGGATRVPKLQVKLQEYFGRKDLDKHLDADEAIVLGAALLAANLSDGIKLNRKL GMVDGSSYSFIVELDGPDLSKYGATRLLLVPRMKKLPSKIFKSLNHSKDFEVSLAYDH EDLLPPGLSSPIFAQYAVSGLTDAAEKYSSRNLSSPIKTNLHFSLSRSGILSLDQAEA VIQISEWIEVAKRNLTVENTTSASLNVSVDVGTKNTSEQSNNGLDSDGGISNASNSSE PNTMDLGTERKLKKRTYKIPLKVQ" gene complement(18043173..18050000) /locus_tag="TCM_044596" /note="dbxref CacaoGD:Thecc1EG044596" mRNA complement(join(18043173..18043608,18047710..18047784, 18047913..18048871,18049892..18050000)) /locus_tag="TCM_044596" /product="BZIP domain class transcription factor isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g47220.1" /inference="alignment:exonerate- protein:2:ricco:30226.m002055" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042034t5" /inference="similar to AA sequence:Phytozome:POPTR_0008s01130.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5008t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4611t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc624t1" mRNA complement(join(18043181..18043608,18047710..18047781, 18047913..18048960,18049892..18049978)) /locus_tag="TCM_044596" /product="BZIP domain class transcription factor isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g47220.1" /inference="alignment:exonerate- protein:2:ricco:30226.m002055" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042034t5" /inference="similar to AA sequence:Phytozome:POPTR_0008s01130.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06513t00001; alternateUTRof:Thecc1EG044596t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4611t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc624t1" mRNA complement(join(18043263..18043608,18047710..18047781, 18047913..18048871,18049892..18049935)) /locus_tag="TCM_044596" /product="BZIP domain class transcription factor isoform 1" /inference="alignment:exonerate- protein:2:ricco:30226.m002055" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042034t5" /inference="similar to AA sequence:Phytozome:POPTR_0008s01130.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4611t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4611t1" CDS complement(join(18043528..18043608,18047710..18047781, 18047913..18048725)) /locus_tag="TCM_044596" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042034t5" /codon_start=1 /product="BZIP domain class transcription factor isoform 1" /protein_id="EOY19475.1" /db_xref="Phytozome:POPTR_0008s01130.1" /db_xref="TAIR:AT3G56850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIQ3" /translation="MGIQTMVSQGDSGSNGKESQFQQLTRQNSMYSLTLDEVQNQLGD LGKPLSSMNLDELLKNVWTAEANQNYGMETEGTALTNQTALQRQSSLSLTSALSKKTV DEVWRDIQQSKNDGEKKYRERQPTLGEMTLEDFLVKAGVVAEASTDKKGGGSVAGVDL SVAPQFAQQGQWMQYPQPQYQHPQQSLMGVYMSAQPMPQPLTIGATAVMDVSYPDNQV PLPSPLMGTLSDTQASGRKRGAPEDMIEKNVDRRQKRMIKNRESAARSRARKQAYTNE LENKVSRLEEENARLKDRKEQEMKLPSAPPPEPKYQLRRTSSAPF" CDS complement(join(18043528..18043608,18047710..18047781, 18047913..18048725)) /locus_tag="TCM_044596" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042034t5" /codon_start=1 /product="BZIP domain class transcription factor isoform 1" /protein_id="EOY19476.1" /db_xref="Phytozome:POPTR_0008s01130.1" /db_xref="TAIR:AT3G56850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIQ3" /translation="MGIQTMVSQGDSGSNGKESQFQQLTRQNSMYSLTLDEVQNQLGD LGKPLSSMNLDELLKNVWTAEANQNYGMETEGTALTNQTALQRQSSLSLTSALSKKTV DEVWRDIQQSKNDGEKKYRERQPTLGEMTLEDFLVKAGVVAEASTDKKGGGSVAGVDL SVAPQFAQQGQWMQYPQPQYQHPQQSLMGVYMSAQPMPQPLTIGATAVMDVSYPDNQV PLPSPLMGTLSDTQASGRKRGAPEDMIEKNVDRRQKRMIKNRESAARSRARKQAYTNE LENKVSRLEEENARLKDRKEQEMKLPSAPPPEPKYQLRRTSSAPF" CDS complement(join(18043528..18043608,18047710..18047784, 18047913..18048725)) /locus_tag="TCM_044596" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042034t5" /codon_start=1 /product="BZIP domain class transcription factor isoform 4" /protein_id="EOY19478.1" /db_xref="Phytozome:POPTR_0008s01130.1" /db_xref="TAIR:AT3G56850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIQ3" /translation="MGIQTMVSQGDSGSNGKESQFQQLTRQNSMYSLTLDEVQNQLGD LGKPLSSMNLDELLKNVWTAEANQNYGMETEGTALTNQTALQRQSSLSLTSALSKKTV DEVWRDIQQSKNDGEKKYRERQPTLGEMTLEDFLVKAGVVAEASTDKKGGGSVAGVDL SVAPQFAQQGQWMQYPQPQYQHPQQSLMGVYMSAQPMPQPLTIGATAVMDVSYPDNQV PLPSPLMGTLSDTQASGRKRGAPEDMIEKNVDRRQKRMIKNRESAARSRARKQQAYTN ELENKVSRLEEENARLKDRKEQEMKLPSAPPPEPKYQLRRTSSAPF" mRNA complement(join(<18043584..18043608,18047710..18047781, 18047913..18049084)) /locus_tag="TCM_044596" /product="BZIP domain class transcription factor isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g47220.1" /inference="alignment:exonerate- protein:2:ricco:30226.m002055" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042034t3" /inference="similar to AA sequence:Phytozome:POPTR_0008s01130.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc656t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4611t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc624t1" mRNA complement(join(18043584..18043608,18047431..18047520, 18047710..18047781,18047913..18049084)) /locus_tag="TCM_044596" /product="BZIP domain class transcription factor isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g47220.1" /inference="alignment:exonerate- protein:2:ricco:30226.m002055" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042034t3" /inference="similar to AA sequence:Phytozome:POPTR_0008s01130.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc656t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc624t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4611t1" CDS complement(join(<18043585..18043608,18047710..18047781, 18047913..18048725)) /locus_tag="TCM_044596" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG042034t3" /codon_start=1 /product="BZIP domain class transcription factor isoform 5" /protein_id="EOY19479.1" /db_xref="Phytozome:POPTR_0008s01130.1" /db_xref="TAIR:AT3G56850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIQ3" /translation="MGIQTMVSQGDSGSNGKESQFQQLTRQNSMYSLTLDEVQNQLGD LGKPLSSMNLDELLKNVWTAEANQNYGMETEGTALTNQTALQRQSSLSLTSALSKKTV DEVWRDIQQSKNDGEKKYRERQPTLGEMTLEDFLVKAGVVAEASTDKKGGGSVAGVDL SVAPQFAQQGQWMQYPQPQYQHPQQSLMGVYMSAQPMPQPLTIGATAVMDVSYPDNQV PLPSPLMGTLSDTQASGRKRGAPEDMIEKNVDRRQKRMIKNRESAARSRARKQAYTNE LENKVSRLEEENARLKDRKEQEMKLPS" CDS complement(join(18047470..18047520,18047710..18047781, 18047913..18048725)) /locus_tag="TCM_044596" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042034t3" /codon_start=1 /product="BZIP domain class transcription factor isoform 3" /protein_id="EOY19477.1" /db_xref="Phytozome:POPTR_0008s01130.1" /db_xref="TAIR:AT3G56850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIQ3" /translation="MGIQTMVSQGDSGSNGKESQFQQLTRQNSMYSLTLDEVQNQLGD LGKPLSSMNLDELLKNVWTAEANQNYGMETEGTALTNQTALQRQSSLSLTSALSKKTV DEVWRDIQQSKNDGEKKYRERQPTLGEMTLEDFLVKAGVVAEASTDKKGGGSVAGVDL SVAPQFAQQGQWMQYPQPQYQHPQQSLMGVYMSAQPMPQPLTIGATAVMDVSYPDNQV PLPSPLMGTLSDTQASGRKRGAPEDMIEKNVDRRQKRMIKNRESAARSRARKQAYTNE LENKVSRLEEENARLKDRKLFLVQLSSILRHYPII" mRNA complement(join(18047713..18047815,18047913..18049084)) /locus_tag="TCM_044596" /product="BZIP domain class transcription factor isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g47220.1" /inference="alignment:exonerate- protein:2:ricco:30226.m002055" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042034t3" /inference="similar to AA sequence:Phytozome:POPTR_0008s01130.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc656t3; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc624t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4611t1" CDS complement(join(18047807..18047815,18047913..18048725)) /locus_tag="TCM_044596" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG042034t3" /codon_start=1 /product="BZIP domain class transcription factor isoform 6" /protein_id="EOY19480.1" /db_xref="Phytozome:POPTR_0008s01130.1" /db_xref="TAIR:AT3G56850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIQ3" /translation="MGIQTMVSQGDSGSNGKESQFQQLTRQNSMYSLTLDEVQNQLGD LGKPLSSMNLDELLKNVWTAEANQNYGMETEGTALTNQTALQRQSSLSLTSALSKKTV DEVWRDIQQSKNDGEKKYRERQPTLGEMTLEDFLVKAGVVAEASTDKKGGGSVAGVDL SVAPQFAQQGQWMQYPQPQYQHPQQSLMGVYMSAQPMPQPLTIGATAVMDVSYPDNQV PLPSPLMGTLSDTQASGRKRGAPEDMIEKNVDRRQKRMIKNRESAARSRARKQII" mobile_element complement(18050214..18050268) /note="source:INTACT415F_F22_scaffold_4-int 2204 2262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18050230..18050287 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3230 3290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18056367..18056617) /note="source:INTACT405F_F91_scaffold_4-int 7316 7600" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18056462..18056859 /note="source:CACAO_M_S_E101805_F5_scaffold_9 1907 2322" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18057138..18057422) /note="source:INTACT280_F60_scaffold_5-int 10217 10498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18057836..18058325) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5952 6404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18058478..18058989) /note="source:CACAO_M_S_E7818_F60_scaffold_2 18547 19087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18059541..18061327 /note="source:CACAO_M_S_E90022_F9_scaffold_8 12669 14497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18059766..18061989) /note="source:CACAO_M_S_E84261_F4_scaffold_6 9174 11495" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18061991..18063532 /note="source:CACAO_M_S_E6284_F17_scaffold_2 2 1545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18063535..18064647) /note="source:CACAO_M_S_E84261_F4_scaffold_6 8428 9170" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18064978..18065235) /note="source:CACAO_M_S_E84261_F4_scaffold_6 4823 5091" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18065234..18066224) /note="source:CACAO_M_E43348_F5_scaffold_5 4976 5868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18066265..18067576) /note="source:CACAO_M_E43348_F5_scaffold_5 3689 4991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18067562..18069038) /note="source:INTACT280_F60_scaffold_5-int 2626 4053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18068005..18069171) /note="source:CACAO_M_S_E84261_F4_scaffold_6 3234 4341" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18070387..18072187 /note="source:CACAO_M_S_E90022_F9_scaffold_8 12666 14466" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18073101..18080213 /locus_tag="TCM_044597" /note="dbxref CacaoGD:Thecc1EG044597" mRNA join(18073101..18074527,18079536..18080213) /locus_tag="TCM_044597" /product="SAD1/UNC-84 domain protein 2, putative" /inference="alignment:exonerate- protein:2:ricco:28842.m000925" /inference="similar to AA sequence:ricco:28842.m000925" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01902t00001" CDS join(18073427..18074527,18079536..18079835) /locus_tag="TCM_044597" /note="dbxref ricco:28842.m000925" /codon_start=1 /product="SAD1/UNC-84 domain protein 2, putative" /protein_id="EOY19481.1" /db_xref="TAIR:AT5G04990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BJ94" /translation="MSASNVSISATPAAVARRRPVVVGEKKSSIELLTAEPNPNGVNI GDDKAGAAAAAGHSRDLSHHSVRGEASKDTVQARKSALGQNSNATLRRTRKGVANKTE KPRWLTVVSIFIKNLVLLLVLVGLVQIIRRLALKTGEVSGVGTQMELTEFEGRVAEVE SFLKTTAKMIQVQVEVVDRKIENEIGGLRRELNERIDDQIGVVESSLKKLEEKSEGLD KSLSELRSSNLLTKEEFDKLYEQLIKEKGENGDNENAVSLSDLGAYAREIVKNEIEKH ASDGLARADYALFSGGGKVVRHSEPLLVGKGSNWFLKSSQNGVHRDADKMLKPSFGEP GQCFPLKGSNGFVQIKLRTAIIPEAITLEHVAKSVAYDRSSAPKDCCVSGWQQGRDLD SPVDGYKMFRLAEFTYDLEKSSAQTFDVLDAAGVGIIDTVRLDFSSNYGSPSHTCIYR LRVHGHEPDSVSVVKM" gene 18080824..18081566 /locus_tag="TCM_044598" /note="dbxref CacaoGD:Thecc1EG044598" mRNA join(18080824..18080994,18081064..18081566) /locus_tag="TCM_044598" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage" CDS join(18080970..18080994,18081064..18081302) /locus_tag="TCM_044598" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19482.1" /translation="MAGMLQAAAAISASLQSLNGTASVAADDMEVEFVMGSNVNRMLA GTPHPIDASKTPGKPAGKSLPRKNSPKKNQPCSIYTRDCHRYK" mobile_element complement(18084572..18087754) /note="source:CACAO_M_E71445_F328_scaffold_10 1 3183" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18089703..18089796 /note="source:scaffold_4_CACTA_0482 7630 7723" /mobile_element_type="transposon:TIR/CACTA" gene 18090734..18093003 /locus_tag="TCM_044599" /note="dbxref CacaoGD:Thecc1EG044599" mRNA join(18090734..18090889,18092645..18093003) /locus_tag="TCM_044599" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:POPTR_0001s44370.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" mobile_element 18090774..18090823 /note="source:INTACT505_F28_scaffold_3-int 12904 12948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18090779..18092411) /note="source:CACAO_M_E84368_F4_scaffold_10 11579 13211" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(18090851..18090889,18092645..18092923) /locus_tag="TCM_044599" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19483.1" /db_xref="Phytozome:POPTR_0001s44370.1" /translation="MLNTLWIFYIMYEHEMYQVKNNGCYLTLCNKNDLVTERFLGIAY VLDTSATSLKATIEAMFPKYGLSLSRVCGECFDGANNIRSEFSGLKTFIMRENESAYY IHC" gene complement(18093086..18095259) /locus_tag="TCM_044600" /note="dbxref CacaoGD:Thecc1EG044600" mRNA complement(join(18093086..18093933,18095034..18095259)) /locus_tag="TCM_044600" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.42 coverage" CDS complement(18093353..18093577) /locus_tag="TCM_044600" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19484.1" /translation="MVGVQTTRTHIYKFGNKTLDSKLLASIETFESACGLTPSSDVAQ APLSKIQGYHEMKVEMKQLHTQMLDIQTSL" mobile_element complement(18095958..18096483) /note="source:INTACT160_F4_scaffold_7-int 13846 14367" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18096481..18101122) /note="source:CACAO_M_E11488_F17_scaffold_2 6 4603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18101124..18104980) /note="source:INTACT160_F4_scaffold_7-int 7641 11504" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18105167..18107295) /note="source:INTACT160_F4_scaffold_7-int 12826 14939" /mobile_element_type="retrotransposon:LTR/Copia" gene 18112004..18117250 /locus_tag="TCM_044604" /note="dbxref CacaoGD:Thecc1EG044604" mRNA join(18112004..18112382,18112446..18112655, 18112797..18112872,18113842..18113923,18114030..18114134, 18114634..18115141,18115252..18115445,18115569..18115677, 18116188..>18116336) /locus_tag="TCM_044604" /product="DNAse I-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001155t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s25410.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8128t3; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc708t10_C2" mRNA join(18112004..18112382,18112446..18112655, 18112797..18112872,18113842..18113923,18114030..18114134, 18114634..18115141,18115252..18115445,18115569..18115677, 18116103..18116214) /locus_tag="TCM_044604" /product="DNAse I-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001155t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01160.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8128t2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc708t10_C2" mRNA join(18112527..18112655,18112797..18112872, 18113842..18113923,18114030..18114134,18114634..18115141, 18115252..18115445,18115569..18115677,18116188..18116336, 18116418..18117233) /locus_tag="TCM_044604" /product="DNAse I-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001155t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s25410.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc708t10_C2" CDS join(18112590..18112655,18112797..18112872, 18113842..18113923,18114030..18114134,18114634..18115141, 18115252..18115445,18115569..18115677,18116188..18116336, 18116418..18116562) /locus_tag="TCM_044604" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG001155t1" /codon_start=1 /product="DNAse I-like superfamily protein isoform 1" /protein_id="EOY19485.1" /db_xref="Phytozome:POPTR_0010s25410.1" /db_xref="TAIR:AT5G04980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK84" /translation="MIGVGLSGLNLMNQDRTNQQTSSLIGKIFSVKGRNQSKETEVSI GSSEGQYNLPLEPLLSRGVSTKVPSENLSFRVFVATWNVGGKSPDTKLNLDDILQVRE ESDIYVLGFQEVVPLNAGNVLVIEDNEPAAKWLALINQSLNKAHNVPLRGPRSIASSG GSLVFQKTSLRKVSKAFRTESKRRLKSCNCPTDLGRKNSKEFCFRCPQSQTNENEFSS EEDEDGSSNFDTNQIKYGLVACKQMVGIFLTVWTRKELVQHVSHLRISCVGRGILGCL GNKGCISVSMIFHKTSFCFLCSHLASGEKEGDELRRNVDVVEILRNTQFPRICRTSGY RVPEKVLDHDRVIWLGDLNYRIALSYSDTGKLLKEEAWDALYDKDQLKIEREAGRVFK GWKEGKIYFAPTYKYSDGSNRYAGETVETKSKRRTPAWCDRILWHGSKIYQLSYGRKE SRFSDHRPVCATFWVSVEATEDGSRKR" CDS join(18112590..18112655,18112797..18112872, 18113842..18113923,18114030..18114134,18114634..18115141, 18115252..18115445,18115569..18115677,18116188..>18116334) /locus_tag="TCM_044604" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG001155t1" /codon_start=1 /product="DNAse I-like superfamily protein isoform 2" /protein_id="EOY19486.1" /db_xref="Phytozome:POPTR_0010s25410.1" /db_xref="TAIR:AT5G04980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK84" /translation="MIGVGLSGLNLMNQDRTNQQTSSLIGKIFSVKGRNQSKETEVSI GSSEGQYNLPLEPLLSRGVSTKVPSENLSFRVFVATWNVGGKSPDTKLNLDDILQVRE ESDIYVLGFQEVVPLNAGNVLVIEDNEPAAKWLALINQSLNKAHNVPLRGPRSIASSG GSLVFQKTSLRKVSKAFRTESKRRLKSCNCPTDLGRKNSKEFCFRCPQSQTNENEFSS EEDEDGSSNFDTNQIKYGLVACKQMVGIFLTVWTRKELVQHVSHLRISCVGRGILGCL GNKGCISVSMIFHKTSFCFLCSHLASGEKEGDELRRNVDVVEILRNTQFPRICRTSGY RVPEKVLDHDRVIWLGDLNYRIALSYSDTGKLLKEEAWDALYDKDQLKIEREAGRVFK GWKEGKIYFAPTYKYSDGSNRYAGETVETKSKRRTPA" CDS join(18112590..18112655,18112797..18112872, 18113842..18113923,18114030..18114134,18114634..18115141, 18115252..18115445,18115569..18115677,18116103..18116114) /locus_tag="TCM_044604" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG001155t1" /codon_start=1 /product="DNAse I-like superfamily protein isoform 3" /protein_id="EOY19487.1" /db_xref="Phytozome:POPTR_0008s01160.1" /db_xref="TAIR:AT5G04980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BXV6" /translation="MIGVGLSGLNLMNQDRTNQQTSSLIGKIFSVKGRNQSKETEVSI GSSEGQYNLPLEPLLSRGVSTKVPSENLSFRVFVATWNVGGKSPDTKLNLDDILQVRE ESDIYVLGFQEVVPLNAGNVLVIEDNEPAAKWLALINQSLNKAHNVPLRGPRSIASSG GSLVFQKTSLRKVSKAFRTESKRRLKSCNCPTDLGRKNSKEFCFRCPQSQTNENEFSS EEDEDGSSNFDTNQIKYGLVACKQMVGIFLTVWTRKELVQHVSHLRISCVGRGILGCL GNKGCISVSMIFHKTSFCFLCSHLASGEKEGDELRRNVDVVEILRNTQFPRICRTSGY RVPEKVLDHDRVIWLGDLNYRIALSYSDTGKLLKEEAWDALYDKDQSCL" mRNA join(<18113879..18113923,18114030..18114134, 18114634..18115141,18116185..18116336,18116418..18117250) /locus_tag="TCM_044604" /product="DNAse I-like superfamily protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25410.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s25410.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial5; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc906t11; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc708t10_C2" CDS join(<18113880..18113923,18114030..18114134, 18114634..18115141,18116185..18116336,18116418..18116562) /locus_tag="TCM_044604" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="DNAse I-like superfamily protein, putative isoform 5" /protein_id="EOY19489.1" /db_xref="Phytozome:POPTR_0010s25410.1" /db_xref="TAIR:AT5G04980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK84" /translation="RGVSTKVPSENLSFRVFVATWNVGGKSPDTKLNLDDILQVREES DIYVLGFQEVVPLNAGNVLVIEDNEPAAKWLALINQSLNKAHNVPLRGPRSIASSGGS LVFQKTSLRKVSKAFRTESKRRLKSCNCPTDLGRKNSKEFCFRCPQSQTNENEFSSEE DEDGSSNFDTNQIKYGLVACKQMVGIFLTVWTRKELVQHVSHLRISCVGRGILGCLGN KQLKIEREAGRVFKGWKEGKIYFAPTYKYSDGSNRYAGETVETKSKRRTPAWCDRILW HGSKIYQLSYGRKESRFSDHRPVCATFWVSVEATEDGSRKR" mRNA join(<18113894..18113904,18114030..18114134, 18114634..18115141,18115252..18115445,18115569..18115677, 18116188..18116336,18116418..18117220) /locus_tag="TCM_044604" /product="DNAse I-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001155t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s25410.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc708t2_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc708t10_C2" CDS join(<18113894..18113904,18114030..18114134, 18114634..18115141,18115252..18115445,18115569..18115677, 18116188..18116336,18116418..18116562) /locus_tag="TCM_044604" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG001155t1" /codon_start=1 /product="DNAse I-like superfamily protein isoform 4" /protein_id="EOY19488.1" /db_xref="Phytozome:POPTR_0010s25410.1" /db_xref="TAIR:AT5G04980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK84" /translation="KSAYVFVATWNVGGKSPDTKLNLDDILQVREESDIYVLGFQEVV PLNAGNVLVIEDNEPAAKWLALINQSLNKAHNVPLRGPRSIASSGGSLVFQKTSLRKV SKAFRTESKRRLKSCNCPTDLGRKNSKEFCFRCPQSQTNENEFSSEEDEDGSSNFDTN QIKYGLVACKQMVGIFLTVWTRKELVQHVSHLRISCVGRGILGCLGNKGCISVSMIFH KTSFCFLCSHLASGEKEGDELRRNVDVVEILRNTQFPRICRTSGYRVPEKVLDHDRVI WLGDLNYRIALSYSDTGKLLKEEAWDALYDKDQLKIEREAGRVFKGWKEGKIYFAPTY KYSDGSNRYAGETVETKSKRRTPAWCDRILWHGSKIYQLSYGRKESRFSDHRPVCATF WVSVEATEDGSRKR" mobile_element complement(18117300..18117382) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3179 3291" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18121674..18123982 /locus_tag="TCM_044606" /note="dbxref CacaoGD:Thecc1EG044606" mRNA join(18121674..18121938,18122079..18122162, 18122262..18122391,18122476..18122558,18122728..18122807, 18123564..18123982) /locus_tag="TCM_044606" /product="Plant invertase/pectin methylesterase inhibitor superfamily, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026687t1" /inference="similar to AA sequence:ricco:30155.m001621" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(18121914..18121938,18122079..18122162, 18122262..18122391,18122476..18122558,18122728..18122807, 18123564..18123839) /locus_tag="TCM_044606" /note="dbxref ricco:30155.m001621; paralog of Thecc1EG026687t1" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily, putative" /protein_id="EOY19490.1" /db_xref="TAIR:AT3G10720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94CB1" /translation="MLDKDITKSSNSLSPNYNKKNHNRIDGWTTYNSSTFVVDGERFK AVEVAFQNTAGLEKHQAVAMKNSADYCTFYRCSFERNAATIFQSCNIYVRKPLPEQKN TITAQVLLDGWNGMKRLDLTLCIMRSLETMDKYSRTVFMQSYIDELISPPWWLEWNET FGLDTLYYGEFENYGPGANTSMRVKWPGYSLWNATQAMGFTVYNFTMGDTWLHETDVP FSGGLCH" mobile_element complement(18131815..18133215) /note="source:CACAO_M_E57346_F74_scaffold_9 2667 4111" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18136730..18138784 /locus_tag="TCM_044607" /note="dbxref CacaoGD:Thecc1EG044607" mRNA join(18136730..18136848,18137374..18138784) /locus_tag="TCM_044607" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /inference="similar to AA sequence:ricco:30174.m009054" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(18136844..18136848,18137374..18138019) /locus_tag="TCM_044607" /note="dbxref ricco:30174.m009054" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /protein_id="EOY19491.1" /db_xref="TAIR:AT1G18485.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GTF8" /translation="MWNFMDIQLGMAFQDDELVVNAFVAAYAKCGLLCSAKLVFNVIE TKIVSSLNALISGYAQNDAPMKALEFFLQMTNSGLGPNYFNIRILLLACSHLKSLHFG KKIHGYLLRNGLEVDPFIVISLLSLYIHCGKSATIRLLFKDMTDKSLVSWNALIVGYS QNGFLYQALVLFCQMLSNGIEPNEISINNVFGACSQLSTLQLRKEAHCYAFKALLA" mobile_element 18139152..18139242 /note="source:scaffold_4_CACTA_0482 7636 7726" /mobile_element_type="transposon:TIR/CACTA" gene 18140811..18150627 /locus_tag="TCM_044608" /note="dbxref CacaoGD:Thecc1EG044608" mRNA join(18140811..18141168,18141525..18143835, 18143996..18144085,18144409..18144558,18147121..18147236, 18148813..18149333,18150269..18150627) /locus_tag="TCM_044608" /product="Far1-related sequence 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042009t5" /inference="similar to AA sequence:Phytozome:POPTR_0008s01240.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc760t7" mRNA join(18140990..18141168,18141529..18143835, 18143996..18144085,18144409..18144558,18147121..18147236, 18148813..18149413) /locus_tag="TCM_044608" /product="Far1-related sequence 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042009t5" /inference="similar to AA sequence:Phytozome:POPTR_0008s01240.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5111t2; alternateUTRof:Thecc1EG044608t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc760t7" mRNA join(18140990..18141168,18141529..18143835, 18143996..18144085,18144409..18144558,18147121..18147236, 18148836..18149413) /locus_tag="TCM_044608" /product="Far1-related sequence 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042009t5" /inference="similar to AA sequence:Phytozome:POPTR_0008s01240.3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5111t3; alternateUTRof:Thecc1EG044608t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc760t7" mRNA join(18141021..18141168,18141525..18143835, 18143996..18144085,18144409..18144558,18147121..18147236, 18148836..18149413) /locus_tag="TCM_044608" /product="Far1-related sequence 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042009t5" /inference="similar to AA sequence:Phytozome:POPTR_0008s01240.3" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc580t12; alternateUTRof:Thecc1EG044608t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc760t7" CDS join(18141610..18143835,18143996..18144085, 18144409..18144558,18147121..18147231) /locus_tag="TCM_044608" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042009t5" /codon_start=1 /product="Far1-related sequence 3 isoform 1" /protein_id="EOY19492.1" /db_xref="Phytozome:POPTR_0008s01240.3" /db_xref="TAIR:AT2G27110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVC9" /translation="MDVGGGKGDNVTGVNVVSNKGGDNNWDVTEQSPEIEVVVNQDDD GAGGGKPCVGMEFESEDAGKSFYDGYARQLGFSTHVGQFKRAKPDGPIVTWDFACSRE VFKRKNIESCNAMFRIEQKDGGKWVATKFVEDHNHSMVTPSKVHYLRPRRHFAGATKN VPETLDATTDVFVSVDGNHVSYEANRVRSASSVEPNRLVRNMMPVGYVRPSNQRRMLG RDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFWADARSRTAYNYFGDAVIFDTM YRPNQYQIPFAPFTGINHHGQTVLFGCALLLDESESSFAWLFKTWLSAMNDRPPLSIT TDQDRAIQAAVSQVFPETRHCICRWHILREGQERLAHIYLVHPSFYGELYGCINFSEA IEDFESSWSALLDKYDLHKNEWLQAVYNARKQWAPVYFRGTFFATLSSNQGVSSFFDG YVHQQTTIPLFFKQYERALEHSLEKEIEADCDTICTTPVLKTPSPMEQQAANLYTKKV FSKFQEELVETFVYTANKIEGDGIASKYRVAKYEHDHKAYFVTLNVSEMKASCSCQMF EYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSWVGLDDQPPDPQGIETLTTRF NSLCQEAFKLAEEGAVAPETYNTAISALREAGKRIAFVKKNVVKVTLPSSHNSGNSHE EGSKKITSPVSDIVPSLWPWQDAVSPRFNLNDVGAPLADLNQPSMVPVSIHRDSGHPD STVVLTCFKSMTWVIENKNAMEAGKVAVINLKLHDYGKNPSGETEVQFRLTRITLEPM LRSMAYISQQLSTPVNRVAVINLKLQDTKTTSGETEVKFQVSRDTLGSMLRSMAYIRE QL" CDS join(18141610..18143835,18143996..18144085, 18144409..18144558,18147121..18147231) /locus_tag="TCM_044608" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042009t5" /codon_start=1 /product="Far1-related sequence 3 isoform 1" /protein_id="EOY19493.1" /db_xref="Phytozome:POPTR_0008s01240.3" /db_xref="TAIR:AT2G27110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVC9" /translation="MDVGGGKGDNVTGVNVVSNKGGDNNWDVTEQSPEIEVVVNQDDD GAGGGKPCVGMEFESEDAGKSFYDGYARQLGFSTHVGQFKRAKPDGPIVTWDFACSRE VFKRKNIESCNAMFRIEQKDGGKWVATKFVEDHNHSMVTPSKVHYLRPRRHFAGATKN VPETLDATTDVFVSVDGNHVSYEANRVRSASSVEPNRLVRNMMPVGYVRPSNQRRMLG RDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFWADARSRTAYNYFGDAVIFDTM YRPNQYQIPFAPFTGINHHGQTVLFGCALLLDESESSFAWLFKTWLSAMNDRPPLSIT TDQDRAIQAAVSQVFPETRHCICRWHILREGQERLAHIYLVHPSFYGELYGCINFSEA IEDFESSWSALLDKYDLHKNEWLQAVYNARKQWAPVYFRGTFFATLSSNQGVSSFFDG YVHQQTTIPLFFKQYERALEHSLEKEIEADCDTICTTPVLKTPSPMEQQAANLYTKKV FSKFQEELVETFVYTANKIEGDGIASKYRVAKYEHDHKAYFVTLNVSEMKASCSCQMF EYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSWVGLDDQPPDPQGIETLTTRF NSLCQEAFKLAEEGAVAPETYNTAISALREAGKRIAFVKKNVVKVTLPSSHNSGNSHE EGSKKITSPVSDIVPSLWPWQDAVSPRFNLNDVGAPLADLNQPSMVPVSIHRDSGHPD STVVLTCFKSMTWVIENKNAMEAGKVAVINLKLHDYGKNPSGETEVQFRLTRITLEPM LRSMAYISQQLSTPVNRVAVINLKLQDTKTTSGETEVKFQVSRDTLGSMLRSMAYIRE QL" CDS join(18141610..18143835,18143996..18144085, 18144409..18144558,18147121..18147231) /locus_tag="TCM_044608" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042009t5" /codon_start=1 /product="Far1-related sequence 3 isoform 1" /protein_id="EOY19494.1" /db_xref="Phytozome:POPTR_0008s01240.3" /db_xref="TAIR:AT2G27110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVC9" /translation="MDVGGGKGDNVTGVNVVSNKGGDNNWDVTEQSPEIEVVVNQDDD GAGGGKPCVGMEFESEDAGKSFYDGYARQLGFSTHVGQFKRAKPDGPIVTWDFACSRE VFKRKNIESCNAMFRIEQKDGGKWVATKFVEDHNHSMVTPSKVHYLRPRRHFAGATKN VPETLDATTDVFVSVDGNHVSYEANRVRSASSVEPNRLVRNMMPVGYVRPSNQRRMLG RDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFWADARSRTAYNYFGDAVIFDTM YRPNQYQIPFAPFTGINHHGQTVLFGCALLLDESESSFAWLFKTWLSAMNDRPPLSIT TDQDRAIQAAVSQVFPETRHCICRWHILREGQERLAHIYLVHPSFYGELYGCINFSEA IEDFESSWSALLDKYDLHKNEWLQAVYNARKQWAPVYFRGTFFATLSSNQGVSSFFDG YVHQQTTIPLFFKQYERALEHSLEKEIEADCDTICTTPVLKTPSPMEQQAANLYTKKV FSKFQEELVETFVYTANKIEGDGIASKYRVAKYEHDHKAYFVTLNVSEMKASCSCQMF EYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSWVGLDDQPPDPQGIETLTTRF NSLCQEAFKLAEEGAVAPETYNTAISALREAGKRIAFVKKNVVKVTLPSSHNSGNSHE EGSKKITSPVSDIVPSLWPWQDAVSPRFNLNDVGAPLADLNQPSMVPVSIHRDSGHPD STVVLTCFKSMTWVIENKNAMEAGKVAVINLKLHDYGKNPSGETEVQFRLTRITLEPM LRSMAYISQQLSTPVNRVAVINLKLQDTKTTSGETEVKFQVSRDTLGSMLRSMAYIRE QL" CDS join(18141610..18143835,18143996..18144085, 18144409..18144558,18147121..18147231) /locus_tag="TCM_044608" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042009t5" /codon_start=1 /product="Far1-related sequence 3 isoform 1" /protein_id="EOY19495.1" /db_xref="Phytozome:POPTR_0008s01240.3" /db_xref="TAIR:AT2G27110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVC9" /translation="MDVGGGKGDNVTGVNVVSNKGGDNNWDVTEQSPEIEVVVNQDDD GAGGGKPCVGMEFESEDAGKSFYDGYARQLGFSTHVGQFKRAKPDGPIVTWDFACSRE VFKRKNIESCNAMFRIEQKDGGKWVATKFVEDHNHSMVTPSKVHYLRPRRHFAGATKN VPETLDATTDVFVSVDGNHVSYEANRVRSASSVEPNRLVRNMMPVGYVRPSNQRRMLG RDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFWADARSRTAYNYFGDAVIFDTM YRPNQYQIPFAPFTGINHHGQTVLFGCALLLDESESSFAWLFKTWLSAMNDRPPLSIT TDQDRAIQAAVSQVFPETRHCICRWHILREGQERLAHIYLVHPSFYGELYGCINFSEA IEDFESSWSALLDKYDLHKNEWLQAVYNARKQWAPVYFRGTFFATLSSNQGVSSFFDG YVHQQTTIPLFFKQYERALEHSLEKEIEADCDTICTTPVLKTPSPMEQQAANLYTKKV FSKFQEELVETFVYTANKIEGDGIASKYRVAKYEHDHKAYFVTLNVSEMKASCSCQMF EYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSWVGLDDQPPDPQGIETLTTRF NSLCQEAFKLAEEGAVAPETYNTAISALREAGKRIAFVKKNVVKVTLPSSHNSGNSHE EGSKKITSPVSDIVPSLWPWQDAVSPRFNLNDVGAPLADLNQPSMVPVSIHRDSGHPD STVVLTCFKSMTWVIENKNAMEAGKVAVINLKLHDYGKNPSGETEVQFRLTRITLEPM LRSMAYISQQLSTPVNRVAVINLKLQDTKTTSGETEVKFQVSRDTLGSMLRSMAYIRE QL" mobile_element complement(18145223..18145631) /note="source:CACAO_MITE160_scaffold_10 1 409" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(18145518..18145648) /note="source:scaffold_4_CACTA_0482 4481 4615" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18151904..18152370 /note="source:CACAO_M_E58957_F253_scaffold_9 1 465" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18154938..18154974 /note="source:scaffold_6_CACTA_0702 14632 14668" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18155243..18158618 /note="source:CACAO_M_E58957_F253_scaffold_9 459 3288" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18158617..18158895) /note="source:CACAO_M_E4063_F12_scaffold_2 7443 7726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18159017..18159199 /note="source:CACAO_M_E12289_F140_scaffold_3 259 440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18159244..18164532 /note="source:scaffold_2_CACTA_0248 3104 8436" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18164527..18164671 /note="source:INTACT556_F252_scaffold_2-int 14171 14335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18164738..18165015) /note="source:CACAO_M_E4063_F12_scaffold_2 7443 7726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18164950..18165239 /note="source:CACAO_M_E57346_F74_scaffold_9 1564 1848" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18165147..18165408) /note="source:INTACT622F_F362_scaffold_4-int 11453 11759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18165409..18166039 /note="source:INTACT36_F116_scaffold_6-int 3291 3955" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18166040..18167044) /note="source:INTACT622F_F362_scaffold_4-int 10271 11452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18167062..18169056) /note="source:CACAO_M_S_E50888_F253_scaffold_4 1 1993" /mobile_element_type="retrotransposon:LTR/Copia" gene 18170486..18175130 /locus_tag="TCM_044611" /note="dbxref CacaoGD:Thecc1EG044611" mRNA join(18170486..18170834,18170957..18171085, 18171883..18172295,18173109..18174108,18174547..18175130) /locus_tag="TCM_044611" /product="Myb domain protein 65, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29686.m000890" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041010t1" /inference="similar to AA sequence:ricco:29686.m000890" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc710t4" mRNA join(18170720..18170834,18170957..18171085, 18171883..18172295,18173109..18174108,18174592..18175088) /locus_tag="TCM_044611" /product="Myb domain protein 65, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29686.m000890" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041010t1" /inference="similar to AA sequence:ricco:29686.m000890" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7738t7_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc710t4" mRNA join(18170720..18170834,18170957..18171081, 18171883..18172295,18173109..18174108,18174547..18175088) /locus_tag="TCM_044611" /product="Myb domain protein 65, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29686.m000890" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041010t1" /inference="similar to AA sequence:ricco:29686.m000890" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7738t1_C2; alternateUTRof:Thecc1EG044611t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc710t4" CDS join(18171936..18172295,18173109..18174108, 18174547..18174854) /locus_tag="TCM_044611" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29686.m000890; paralog of Thecc1EG041010t1" /codon_start=1 /product="Myb domain protein 65, putative isoform 1" /protein_id="EOY19496.1" /db_xref="TAIR:AT5G06100.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXK6" /translation="MSHTKNEREDGMLSEDQAESPLADDGNCGGAGGGVVMKKGPWTS AEDAILIEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQL IIELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQALQES HSTSAVNGGDKGPQDIMQNNSYQIPDVIFDSLKANQSVLPYVPELPDISTSSMLMKGL GSSQYCSFMPPTIHRQKRLRESTAFFPGYTGAVKNECPLFDQFQDDMSDKAAQSFGVS FQIEPDPTAKNSESFGVFPGSHALTNGNFSASESSLEAVKLELPSLQYPETELGNWGT ISCPPPLLESVDAFIQSPPPTSGVESDSLSPHNSGLLDALLHEAKTLSSAKNHASDKS SNSSTPGDIAESSNFNICETEWENCGQPLSPMGHSATSLFSECISASGSSLDEQPPAE TFTESHVKSETADHVFTPEIQKEAPIRLDSTRPDTLLASNWLEQGCVYDKDQTIMSDA IATLLGDDLSSEYKNMAAGTSISSQAWGLGSCAWNNMPAVCQMSELP" CDS join(18171936..18172295,18173109..18174108, 18174547..18174854) /locus_tag="TCM_044611" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29686.m000890; paralog of Thecc1EG041010t1" /codon_start=1 /product="Myb domain protein 65, putative isoform 1" /protein_id="EOY19497.1" /db_xref="TAIR:AT5G06100.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXK6" /translation="MSHTKNEREDGMLSEDQAESPLADDGNCGGAGGGVVMKKGPWTS AEDAILIEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQL IIELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQALQES HSTSAVNGGDKGPQDIMQNNSYQIPDVIFDSLKANQSVLPYVPELPDISTSSMLMKGL GSSQYCSFMPPTIHRQKRLRESTAFFPGYTGAVKNECPLFDQFQDDMSDKAAQSFGVS FQIEPDPTAKNSESFGVFPGSHALTNGNFSASESSLEAVKLELPSLQYPETELGNWGT ISCPPPLLESVDAFIQSPPPTSGVESDSLSPHNSGLLDALLHEAKTLSSAKNHASDKS SNSSTPGDIAESSNFNICETEWENCGQPLSPMGHSATSLFSECISASGSSLDEQPPAE TFTESHVKSETADHVFTPEIQKEAPIRLDSTRPDTLLASNWLEQGCVYDKDQTIMSDA IATLLGDDLSSEYKNMAAGTSISSQAWGLGSCAWNNMPAVCQMSELP" CDS join(18171936..18172295,18173109..18174108, 18174592..18174854) /locus_tag="TCM_044611" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29686.m000890; paralog of Thecc1EG041010t1" /codon_start=1 /product="Myb domain protein 65, putative isoform 3" /protein_id="EOY19498.1" /db_xref="TAIR:AT5G06100.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXK6" /translation="MSHTKNEREDGMLSEDQAESPLADDGNCGGAGGGVVMKKGPWTS AEDAILIEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQL IIELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQALQES HSTSAVNGGDKGPQDIMQNNSYQIPDVIFDSLKANQSVLPYVPELPDISTSSMLMKGL GSSQYCSFMPPTIHRQKRLRESTAFFPGYTGAVKNECPLFDQFQDDMSDKAAQSFGVS FQIEPDPTAKNSESFGVFPGSHALTNGNFSASESSLEAVKLELPSLQYPETELGNWGT ISCPPPLLESVDAFIQSPPPTSGVESDSLSPHNSGLLDALLHEAKTLSSAKNHASDKS SNSSTPGDIAESSNFNICETEWENCGQPLSPMGHSATSLFSECISASGSSLDEQPPAE TFTEIQKEAPIRLDSTRPDTLLASNWLEQGCVYDKDQTIMSDAIATLLGDDLSSEYKN MAAGTSISSQAWGLGSCAWNNMPAVCQMSELP" gene complement(18175278..18178961) /locus_tag="TCM_044612" /note="dbxref CacaoGD:Thecc1EG044612" mRNA complement(join(18175278..18176400,18176568..18176647, 18176737..18176990,18178676..18178961)) /locus_tag="TCM_044612" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010475t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(join(18175976..18176400,18176568..18176647, 18176737..18176768)) /locus_tag="TCM_044612" /note="paralog of Thecc1EG010475t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19499.1" /translation="MTCRGLKPLVIESTPRAEVSSQVKEQSISKSKGGEESFLGNVSS SFEPNRFTDFQGTPILSRYLELLKYMYDVEGQFWSFRTKNMNAAVMATMDNALEIASS SWADISLEQLKEMGDCMEDILRAGCKVKCLDTCIAKAKTLTALKEIKSQIASPKSRKK ELRRRLDSFSTPLNFTFN" mobile_element 18177582..18178166 /note="source:scaffold_8_CACTA_0867 422 1008" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18178167..18179673 /note="source:CACAO_M_E72735_F17_scaffold_10 1 1508" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18179687..18182748 /note="source:CACAO_Mutator_E592_scaffold_3 4629 7637" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18181985..18182958 /note="source:scaffold_8_CACTA_0867 3572 4577" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18183027..18183401) /note="source:CACAO_M_E58877_F5_scaffold_9 20414 20735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18183088..18183450) /note="source:scaffold_5_CACTA_0614 6054 6405" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18183402..18183448) /note="source:CACAO_on_E205_scaffold_7 4772 5186" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18183805..18184387) /note="source:INTACT641_F282_scaffold_1-int 4376 6494" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18184388..18185893) /note="source:INTACT700_F304_scaffold_7-int 7 1492" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18186280..18193423) /locus_tag="TCM_044615" /note="dbxref CacaoGD:Thecc1EG044615" mRNA complement(join(18186280..18186877,18187550..18187699, 18188140..18188367,18188776..18188924,18189051..18189758, 18189942..18190141,18191176..18191247,18191663..18191760, 18192339..18192481,18192589..18193423)) /locus_tag="TCM_044615" /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024648001" /inference="similar to AA sequence:ricco:29686.m000891" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10929t1" CDS complement(join(18186638..18186877,18187550..18187699, 18188140..18188367,18188776..18188924,18189051..18189758, 18189942..18190141,18191176..18191247,18191663..18191760, 18192339..18192481,18192589..18192832)) /locus_tag="TCM_044615" /note="dbxref ricco:29686.m000891" /codon_start=1 /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain" /protein_id="EOY19500.1" /db_xref="TAIR:AT1G55200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHV6" /translation="MATEAERVVVILDASRELGLSTIKWALLGLPLKPGDKLILLGIL HQVNNPSTLSFMGAGKLSKNSCVFVLEKEKEKTIDMIMGYRIKVDPSSMFGTNRKIIA EEMERKIEEYKKHAEIVKISERCKKGQIEFRIEMRAGSPLKAVASKAAKRLHATWIVL DSLFLMEVTVPKSETNAYLRKVHYDRHLKNDRRYFLENLSCNIVRMKKDNNVEELRGP NVRDNYKAPAARKSNVTYAEMIPATSPCKAQTPRKSQRVENTSLVKEQGGEGSGEHPW HYSRKSTSYSASTSSRGSNRASTSGYNESKSPSSHLHDEEYTTTTGPETGGEHSPLSI IESGDQKDLYSPDENEKQHNHNDDWMGRNPGDQVFKNSICLICQNRRPKIGWMRDFTY AELQAATDGFHARNFLSEGGFGSVYKGVINGLKIAVKQHKYNASLQGEKEFKSEVQVL RKARHENLVMLVGSCSEGNHRLLVYEFVCNGSLDLHLSKHTRRPLTLEKRVKIALGAA RGLKYLHDNNIVHRDMRPNNILVTHDFEPLLGDFGLAKTQQEDSDQSSETVTRVVGTL GYLAPEYAECGKVSTKTDVYSFGVVLLQLITGMKTTDKRLGGKSLVGWARPLLKDRNY PDLIDPRILESHDVHQLFWMVRVAEKCLSKDPQKRLSMDKVVYALNYIMDCDSVCGFR DFSPAESDKVSRDSCESQSPSPCDDDSTFTIEITSPSHFSGRLPPSPSISRKSSASTL YGE" mobile_element 18195825..18196966 /note="source:CACAO_Again_on_E92_scaffold_3 140 1287" /mobile_element_type="transposon:TIR/hAT" gene complement(18197326..18208261) /locus_tag="TCM_044616" /note="dbxref CacaoGD:Thecc1EG044616" mRNA complement(join(18197326..18199822,18201460..18201646, 18208077..18208261)) /locus_tag="TCM_044616" /product="DnaJ domain,Myb-like DNA-binding domain" /inference="alignment:exonerate- protein:2:ricco:29628.m000773" /inference="similar to AA sequence:Phytozome:POPTR_0001s07310.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04448t00001" CDS complement(18197776..18199716) /locus_tag="TCM_044616" /codon_start=1 /product="DnaJ domain,Myb-like DNA-binding domain" /protein_id="EOY19501.1" /db_xref="Phytozome:POPTR_0001s07310.1" /db_xref="TAIR:AT3G11450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LHS5" /translation="MAVHTSIQLISYSQELVDGQPLYVSSNCLPVKALNYEPAGHAFH CAALKLLGCEEDDIAEVDDQNVSNNKEQVYMPSSDSYSSKGKKKSAADGKQQDHYALL GLSHLRYLATEDQIRRSYREAALRHHPDKLAALLLAEETEAAKQVKKDEIENHFKSIQ EAYEILIDPVRRRIYDSTDEFDDEIPTDCGPQDFFKVFGPAFMRNGRWSVNQPIPTLG DDSTPLKDVDNFYNFWYSFKSWREFPHADEYDLEQAESRDHKRWMERQNAKLSEKARR EEYARIRALVDNAYKRDPRILRRKEEQKAEKQRKKEAKFRAKQLQEEEAARAAEEERC RKEEEEKRAAEAALQHKKMKEKEKKLLRKERTRLRTLSAPALSQHLLDLSEDDVESLC TSLGIEQLRSLCDKMENKEGLEQAKIIRDARGYSGNLEKKPDEKKSSELNGSVESNGS VLLSSFEKKEKPWTKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKT VLFQKPDAAKAFDSFLEKRKPAQSIASPLSTRDEVEGVSTPSGTESSAVKTVSPEDSG RIANNPVDVASGIGVSSSSEQDVWSAVQERALVQALKTFPKETSQRWERVAAAVPGKT VNQCKKKFASLKENFRNKKNAV" gene 18201562..18205762 /locus_tag="TCM_044617" /note="dbxref CacaoGD:Thecc1EG044617" mRNA join(18201562..18202176,18204291..18204453, 18204514..18204761,18204845..18204902,18205173..18205216, 18205330..18205762) /locus_tag="TCM_044617" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene17721" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(18201883..18202176,18204291..18204453, 18204514..18204761,18204845..18204902,18205173..18205216, 18205330..18205584) /locus_tag="TCM_044617" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19502.1" /translation="MLHLDQDLIKDFDLYGEKELWEIGDLYGECNLQSGDDFYFVKTL KKKSKNGSSINHSVGTTTWMGEDSSKAIIYSPFLAVQPLGFKNRLWYKGGVSQQRLFK NGVRSGDKGRGGDRGGFGGRGRGRRDQNGGWNNGDCAKDTSFSWNKEANNGPRDRAKT WKQGGQSSIRNQSNDVKQGGWNKGTGSTNEADGLSDSNLAELLGIKEVFTIFAASKWA NSHELDLESDSTNVVLWSIHHVNREANQKADDLAKSGLACSAFLFTGHLDRVGPNVLA GTIQQVTRKLMKVTIKDMALLEVGITKEQALEIKLGLGINQMLLMKAHLLVGIKIHGV RHAASSSWGQGSGSCKGGC" mobile_element complement(18207955..18209487) /note="source:CACAO_M_S_E121812_F17_scaffold_10 1 1533" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18214511..18215283 /locus_tag="TCM_044619" /note="dbxref CacaoGD:Thecc1EG044619" mRNA 18214511..18215283 /locus_tag="TCM_044619" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene17721" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044667t1" /inference="similar to AA sequence:frave:gene24342" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS 18214740..18215177 /locus_tag="TCM_044619" /note="dbxref frave:gene24342; paralog of Thecc1EG044667t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19503.1" /translation="MSMLHLDQDLIKDFDLYGEKEPWEIWDLYGGCNLQSDEDLYFFT KLKKKSQNSSRINRSVGMGTWMGEDSGKPIYSHLSAVQPLGFKKRLRYEGGVPHQVGQ WIMHEYSLNIDLVPENDQGYVLCRLRKNDREEKKAEKRRKLIT" gene 18217646..18218755 /locus_tag="TCM_044620" /note="dbxref CacaoGD:Thecc1EG044620" mRNA join(18217646..18218418,18218507..18218755) /locus_tag="TCM_044620" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044677t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(18217906..18218418,18218507..18218677) /locus_tag="TCM_044620" /note="paralog of Thecc1EG044677t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19504.1" /translation="MAANPAVALAAQRATVVPVSMCQQLRRNVVTKTHETKIMAAKSN PVVQYEAGLLTSTPRQGLHRNRVSSKRDKTVMAAYPVTIQFATDIPECTECKLENLSG QVLRLDDKTFWEGSILDLPREIIDKAEFTHIADAKGSVIGSVGALVYVIGDGTSKWII AGSNSKNDLNKVYTEMVSYDVVDWDRIKESTDKCGNTVHIENLGFSSDVEIDQTNAKP TMKEKFTIA" gene 18220534..18221179 /locus_tag="TCM_044621" /note="dbxref CacaoGD:Thecc1EG044621" mRNA 18220534..18221179 /locus_tag="TCM_044621" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400012529" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044673t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1086t1" CDS 18220572..18220814 /locus_tag="TCM_044621" /note="paralog of Thecc1EG044673t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19505.1" /translation="MGEDSGKPIYSQLSAIQPVGFKRRFRYEGGVPQQVGQWIMHEYS LNTTLVPENDQGYVLCRVRKNDREEKKAEKRRKLIT" mobile_element complement(18223757..18223881) /note="source:INTACT133_F149_scaffold_2-int 4694 4809" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(18223872..18224458) /note="source:INTACT133_F149_scaffold_2-int 2523 3136" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(18224879..18224976) /note="source:INTACT88_F12_scaffold_4-int 13891 13988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18224977..18227877) /note="source:CACAO_M_E71438_F86_scaffold_10 1 2901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18227878..18229497) /note="source:INTACT505_F28_scaffold_3-int 2080 3740" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18230800..18233101) /note="source:INTACT133_F149_scaffold_2-int 2 2270" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(18233102..18233578) /note="source:INTACT133_F149_scaffold_2-int 2669 3130" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(18233578..18235110) /note="source:INTACT242_F12_scaffold_1-int 3032 4549" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18234310..18243974 /locus_tag="TCM_044624" /note="dbxref CacaoGD:Thecc1EG044624" mRNA join(18234310..18234653,18239958..18240489, 18240581..18240758,18241175..18241780,18243648..18243974) /locus_tag="TCM_044624" /product="Receptor like protein 34" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030700t1" /inference="similar to AA sequence:Phytozome:GSVIVT01020334001" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS join(18234528..18234653,18239958..18240489, 18240581..18240758,18241175..18241643) /locus_tag="TCM_044624" /note="paralog of Thecc1EG030700t1" /codon_start=1 /product="Receptor like protein 34" /protein_id="EOY19506.1" /db_xref="Phytozome:GSVIVT01020334001" /db_xref="TAIR:AT3G11010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SWS3" /translation="MKINSWSRYHVITSGSLAPLNPTCHGSLKMFSDIGESSGSNRVI VFPSLISLEFSYNFLNRTLPSWLYTASSLKYISLSNNELNSDIKEFLYKSLEKIFLRN NKLKSPLPSSISQLVNLTHVSLSLNNLSDIVEFDMFSKLKNLQYLDLSYNCLSLNTNG TSADYTLPNLSSLYLSSCNVSEFPQFLKGLKRFHSLDLSKNRINGKIPKWMGDVAKDS LNLPIPSSTTNVFLTSNNSLSEEISYLICNADSLEFLDLSHNNLSGIIPQCFRNLSKG LSIGRFYSYSIGIAIKGLEIELVKIFILLTIIDLLNNEFQGEIPVIVRELNSLKGFNL SHNNLSGYIPTSLGNLIGLEWLDLFSNKLVGKVPEQLLDLTSLSFLILSKNELVGCIP LSKQFNTFENNSYEGNDGLCGLPLTRDCNNNEPTQQLSPSNL" mobile_element complement(18235119..18235390) /note="source:INTACT88_F12_scaffold_4-int 12227 12501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18235957..18237126 /note="source:INTACT745_F320_scaffold_4-int 2283 3313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18239364..18239558 /note="source:CACAO_M_S_E5657_F17_scaffold_2 1343 1531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18244380..18245407) /note="source:CACAO_Again_on_S_E290_scaffold_10 1 1028" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18246880..18247822) /note="source:CACAO_M_S_E17777_F2_scaffold_3 7117 8044" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18250677..18253269) /note="source:INTACT705_F74_scaffold_10-int 1 2593" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18260094..18260838 /locus_tag="TCM_044626" /note="dbxref CacaoGD:Thecc1EG044626" mRNA join(18260094..18260384,18260477..18260838) /locus_tag="TCM_044626" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044674t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5071t1" CDS join(18260151..18260384,18260477..18260665) /locus_tag="TCM_044626" /note="paralog of Thecc1EG044674t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19507.1" /translation="MATNPPTNVQFTNSSGEILYLNAVNIWVGPPQSYIPLKIPVGPT VGVTQQGSVVGIEYKFKDNYSLIVAWINNGVSNKVYAQILPAGTGSQSVQWARIKESV EKSGNSFDTANLYGYRCALVIDTVGPTPTLGATFSQAT" mobile_element complement(18268846..18270606) /note="source:INTACT622F_F362_scaffold_4-int 9525 11283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18275240..18275486 /note="source:CACAO_on_S_E46_scaffold_2 13548 13794" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18279428..18279726 /note="source:INTACT52F_F339_scaffold_1-int 9367 9673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18279853..18281187 /note="source:scaffold_1_CACTA_0011 11664 12711" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18280501..18282097) /note="source:INTACT622F_F362_scaffold_4-int 10274 11930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18283901..18283962) /note="source:CACAO_hAT_E1468_scaffold_3 374 435" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18283956..18284032) /note="source:CACAO_hAT_E1468_scaffold_3 25 100" /mobile_element_type="transposon:TIR/hAT" gene 18287834..18289350 /locus_tag="TCM_044628" /note="dbxref CacaoGD:Thecc1EG044628" mRNA join(18287834..18288377,18288557..18289350) /locus_tag="TCM_044628" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044620t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc11277t1" CDS join(18287871..18288377,18288557..18288751) /locus_tag="TCM_044628" /note="paralog of Thecc1EG044620t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19508.1" /translation="MAAIPAVSLALQHAPGVPVSGCQLRRNLVVTRTHNTSIMAAKSN PAVQYEAGVLVSTPCQLDRNWGSTKREKTIVAAFPAPVEYSTGVPVQTDVKLTNSSDA NLKLDDVNFWEGSLEDDKVPKDIESSQELEFSHPADAKGSVGGLEYKFGENLKWIVAW SNSKNDSNKVYAQIVDQNSTVRWAQIKEALDKSGSTFDTGEQFGYSSSVEIHPTSATP KMTVTFANGKPPPPQ" mobile_element 18289896..18290826 /note="source:CACAO_Mariner_E38_scaffold_2 4501 5353" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(18290304..18291354) /note="source:CACAO_Mariner_E180_scaffold_6 5217 6248" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 18292344..18294868 /locus_tag="TCM_044629" /note="dbxref CacaoGD:Thecc1EG044629" mRNA join(18292344..18292830,18293557..18293651, 18294532..18294868) /locus_tag="TCM_044629" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021522t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(18292539..18292830,18293557..18293651, 18294532..18294681) /locus_tag="TCM_044629" /note="paralog of Thecc1EG021522t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19509.1" /translation="MDAKWVHWALWQKVMLPCMEGGLDIRRLMDVVEGFSLKLWWRFK TCTSFWSKFMKAKYCANRIPILVQPKFHDSQAWKRMLSGYNIAEKNIRWRIEKGKLLE RWQWKGDIQIANMLGLKFQHEHFAVPKVYAQILPAGQVVNWAQIRESLKNSSSEVDTG NQFGHKCIGVMLHNKFKD" mobile_element 18294275..18294412 /note="source:CACAO_Again_on_S_E283_scaffold_10 1257 1399" /mobile_element_type="transposon:TIR/hAT" mobile_element 18295272..18296216 /note="source:scaffold_6_CACTA_0700 1 930" /mobile_element_type="transposon:TIR/CACTA" gene complement(18296119..18298346) /locus_tag="TCM_044630" /note="dbxref CacaoGD:Thecc1EG044630" mRNA complement(join(18296119..18296505,18296617..18296758, 18296975..18297102,18298089..18298346)) /locus_tag="TCM_044630" /product="Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019934t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029842001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5084t1" CDS complement(join(18296266..18296505,18296617..18296758, 18296975..18297102,18298089..18298184)) /locus_tag="TCM_044630" /note="paralog of Thecc1EG019934t1" /codon_start=1 /product="Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent" /protein_id="EOY19510.1" /db_xref="Phytozome:GSVIVT01029842001" /db_xref="TAIR:AT3G08590.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O04499" /translation="MKQSNGKVSKGLVNYGVPFLSIMGGRFFRYYKGAPEKWRLIRAH GTAVGLPTEDDMGNSEVGHNALGVGRIYAQGAKLVDLALASGKIYDGEGFKYISESFE KGTLHLIGLLSDGGVHSRLQLLLKGASDHGAKRIRVHVLTDGRDVLVGSSIGFVETLE NDLANLREKGVDAQIASGGGVMYVTMDRYEVRNNCQSPKSM" mobile_element 18297343..18298051 /note="source:CACAO_Again_on_S_E52_scaffold_2 1 743" /mobile_element_type="transposon:TIR/hAT" mobile_element 18298755..18299287 /note="source:scaffold_10_CACTA_0130 9070 9606" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18299110..18299307) /note="source:CACAO_Mutator_E206_scaffold_1 9728 9924" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18301608..18301783) /note="source:CACAO_hAT_E938_scaffold_2 3876 4053" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18302204..18302904) /note="source:scaffold_6_CACTA_0702 7112 7820" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18303782..18303862 /note="source:CACAO_hAT_E1468_scaffold_3 1677 1764" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18306280..18306790) /note="source:INTACT212F_F351_scaffold_3-int 4404 4911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18308445..18309710 /note="source:CACAO_on_S_E46_scaffold_2 8522 9818" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18309811..18318458) /note="source:INTACT72F_F343_scaffold_2-int 854 8909" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18319884..18365804 /locus_tag="TCM_044633" /note="dbxref CacaoGD:Thecc1EG044633" mRNA join(18319884..18320013,18355625..18356128, 18356492..18357258,18361592..18361736,18365714..18365804) /locus_tag="TCM_044633" /product="Transcription factor-like protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400012529.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044667t1" /inference="similar to AA sequence:frave:gene17720" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.17 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc11491t1" mobile_element complement(18320121..18322197) /note="source:CACAO_M_S_E1488_F231_scaffold_1 1 2148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18322198..18329951 /note="source:INTACT498_F231_scaffold_5-int 2618 10436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18330500..18330674 /note="source:scaffold_5_CACTA_0607 9868 10043" /mobile_element_type="transposon:TIR/CACTA" gene complement(18331594..18332560) /locus_tag="TCM_044636" /note="dbxref CacaoGD:Thecc1EG044636" mRNA complement(join(18331594..18332292,18332364..18332560)) /locus_tag="TCM_044636" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030924t3" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(18331768..18332292,18332364..18332426)) /locus_tag="TCM_044636" /note="paralog of Thecc1EG030924t3" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19512.1" /translation="MHKLKCVLSLEFKKLFSLHSEELYLSDLGNDKGCDTINFPLKQN LVNLEYVIVGNCVKIFQIQAGHFFSRVELIQLKHLYQLQGPIEVASLQCLKGLCVSEC SRLKFLLSPMLARNLPQLINLVVEYCKELEEIIDMDQTSASSSQGYLQPISFPNLKYI QIQEYSNLKSLFPLVSPILFQNSKTSQFMGLLNLS" mobile_element 18332900..18333029 /note="source:CACAO_M_E24018_F98_scaffold_4 2000 2108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18332968..18333035) /note="source:CACAO_M_E14347_F12_scaffold_3 8770 8839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18332969..18333043) /note="source:scaffold_7_CACTA_0785 10900 10970" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18334621..18334694) /note="source:INTACT753_F322_scaffold_5-int 7279 7354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18335806..18337288) /note="source:INTACT1407F_F388_scaffold_9-int 3560 5042" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18337281..18339418) /note="source:INTACT1407F_F388_scaffold_9-int 278 2417" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18342021..18342142) /note="source:CACAO_M_S_E1488_F231_scaffold_1 375 493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18342326..18342397 /note="source:CACAO_M_E14347_F12_scaffold_3 8771 8822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18342334..18342398) /note="source:CACAO_M_E72142_F322_scaffold_10 742 788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18343861..18343950) /note="source:INTACT93F_F345_scaffold_2-int 17664 17759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18348318..18348575) /note="source:CACAO_M_E69460_F12_scaffold_9 6896 7165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18348345..18349564 /note="source:CACAO_M_S_E84995_F83_scaffold_7 26 1259" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18349565..18352277 /note="source:CACAO_M_E33007_F33_scaffold_4 1 2718" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18353765..18360900 /locus_tag="TCM_044639" /note="dbxref CacaoGD:Thecc1EG044639" mRNA join(18353765..18353902,18360348..18360900) /locus_tag="TCM_044639" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(18353886..18353902,18360348..18360543) /locus_tag="TCM_044639" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19513.1" /translation="MFVRLRNHILLLYHRSAIMIHRPNRNSIRQDGQRQFEEHKPLES TFTSLAPGSRLLQYLLQLQRLSLFVV" CDS 18356716..18357225 /locus_tag="TCM_044633" /note="dbxref frave:gene17720; paralog of Thecc1EG044667t1" /codon_start=1 /product="Transcription factor-like protein" /protein_id="EOY19511.1" /translation="MFVGFGFEPSDRSLMCYLFSKVTSKSMLHLDQVQIKDFDLYGEK EPWEIWDLHGGFNLQSDEDLYFFTKLKKKSQNGSRINRSVGTGTWMGEDSGKPIYSRL SAIQPLGFKRRFRYEGGVPQQVGQWIMHEYSLNTTLVPENDQGYVLCRVRKNDREEKK AEKRRKLIT" gene 18367923..18371996 /locus_tag="TCM_044640" /note="dbxref CacaoGD:Thecc1EG044640" mRNA join(18367923..18368085,18368200..18368310, 18368471..18368516,18368623..18368677,18369389..18369562, 18370068..18370121,18370303..18370368,18371203..18371281, 18371359..18371838) /locus_tag="TCM_044640" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012409001" /inference="similar to AA sequence:ricco:29686.m000893" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc500t2_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5113t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc752t2" mRNA join(18367996..18368085,18368200..18368310, 18368471..18368516,18368623..18368677,18369467..18369562, 18370068..18370121,18370303..18370368,18371203..18371282, 18371359..18371996) /locus_tag="TCM_044640" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012409001" /inference="similar to AA sequence:Phytozome:GSVIVT01004028001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5113t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5113t1" CDS join(18368017..18368085,18368200..18368310, 18368471..18368516,18368623..18368677,18369467..18369562, 18370068..18370121,18370303..18370368,18371203..18371282, 18371359..18371495) /locus_tag="TCM_044640" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19514.1" /db_xref="Phytozome:GSVIVT01004028001" /db_xref="TAIR:AT2G38695.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T5M9" /translation="MLCSVMSLSLKLTPNSALLFPHRGFNGFSSLSFPGICNSTSLVS QNFNKVSCSIGGDNNIVYGATDNGSYSTNNEGARMGKSESNEGESFSSKDVLKKLRRY GISGVLSYGLLNTAYYLTTFLLVWFYIAPVPGRMGYMAAVERFLKVMAMIWAGSQVTK LVRAGGALALAPFVDRALSWFTVKFKFESQGKGFHGDYRILFWAGFHAVFGCDSALGI KLAIFGSHQLTYLVSPKSC" CDS join(18368017..18368085,18368200..18368310, 18368471..18368516,18368623..18368677,18369389..18369562, 18370068..18370121,18370303..18370368,18371203..18371281, 18371359..18371436) /locus_tag="TCM_044640" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29686.m000893" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY19515.1" /db_xref="TAIR:AT2G38695.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T5M9" /translation="MLCSVMSLSLKLTPNSALLFPHRGFNGFSSLSFPGICNSTSLVS QNFNKVSCSIGGDNNIVYGATDNGSYSTNNEGARMGKSESNEGESFSSKDSEPCNERN VRGESMQIQYLCLLLFFSVLKKLRRYGISGVLSYGLLNTAYYLTTFLLVWFYIAPVPG RMGYMAAVERFLKVMAMIWAGSQVTKLVRAGGALALAPFVDRALSWFTVKFKFESQGK ASMVIIGFCFGLAFMLFLVVTVLWA" gene complement(18373293..18383813) /locus_tag="TCM_044642" /note="dbxref CacaoGD:Thecc1EG044642" mRNA complement(join(18373293..18373776,18377110..18377264, 18377359..18377451,18378642..18378738,18378871..18378956, 18379039..18379257,18380489..18380710,18381903..18382003, 18382291..18382700)) /locus_tag="TCM_044642" /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 3" /inference="alignment:exonerate- protein:2:ricco:29686.m000894" /inference="similar to AA sequence:Phytozome:POPTR_0001s07300.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5129t3; alternateUTRof:Thecc1EG044642t3; inference alignment:Newbler:10:TSA:cgbaL_g10388t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc245t5" mRNA complement(join(18373403..18374324,18377110..18377264, 18377359..18377451,18378642..18378738,18378871..18378956, 18379039..18379257,18380489..18380710,18381903..18382003, 18382291..18382730)) /locus_tag="TCM_044642" /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 1" /inference="alignment:exonerate- protein:2:ricco:29686.m000894" /inference="similar to AA sequence:Phytozome:POPTR_0001s07300.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10388t00001" mRNA complement(join(18373586..18373776,18377110..18377264, 18377359..18377451,18378642..18378740,18380492..18380710, 18381903..18382003,18382291..18382634,18383784..18383809)) /locus_tag="TCM_044642" /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 5" /inference="alignment:exonerate- protein:2:ricco:29686.m000894" /inference="similar to AA sequence:frave:gene00260" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc210t1; inference alignment:Newbler:10:TSA:cgbaL_g10388t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc245t5" mRNA complement(join(18373749..18373776,18377110..18377264, 18377359..18377451,18378642..18378738,18378871..18378956, 18379039..18379257,18380489..18380710,18381903..18382003, 18382291..18382634,18383784..18383813)) /locus_tag="TCM_044642" /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 3" /inference="alignment:exonerate- protein:2:ricco:29686.m000894" /inference="similar to AA sequence:Phytozome:POPTR_0001s07300.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc251t10; inference alignment:Newbler:10:TSA:cgbaL_g10388t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc245t5" mRNA complement(join(18373749..18373776,18376045..18376133, 18377110..18377264,18377359..18377451,18378642..18378738, 18378871..18378956,18379039..18379257,18380489..18380710, 18381903..18382003,18382291..18382634,18383784..18383813)) /locus_tag="TCM_044642" /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 2" /inference="alignment:exonerate- protein:2:ricco:29686.m000894" /inference="similar to AA sequence:Phytozome:POPTR_0001s07300.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc248t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc245t5; inference alignment:Newbler:10:TSA:cgbaL_g10388t00001" CDS complement(join(18373761..18373776,18377110..18377264, 18377359..18377451,18378642..18378740,18380492..18380710, 18381903..18382003,18382291..18382594)) /locus_tag="TCM_044642" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene00260" /codon_start=1 /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 5" /protein_id="EOY19520.1" /db_xref="TAIR:AT3G54380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BLN4" /translation="MDESGRRRQQWRNHPSSSSSSTGHTRFRSQQYSSNPTKTTRSSN FVPRSTTTTGTTPHNTRNPGYVPKWKSVSNANNQQEGETEAGEEVGSIVGTCPFMCPE GERAQRERLRDLAIFERLNGDPRKTSAALAVKKFCRTISLKYVQASDVRPLSVLEDTL NYLLNLLDWSEHPFEVVHDFIFDRTRSIRQDLGMQNIVNDRAICMYEKRFYRMGNYRS FLCTVSAEASYLQYCIIEPYVNEVRALAVSYINNCCYKLHPYPLEHLSKLLMMKESDM ESFCHACGLKTLSDDGGNKLLPTKQTTFCNPKGSFQSCSILGLEQYQRQTAA" CDS complement(join(18373761..18373776,18377110..18377264, 18377359..18377451,18378642..18378738,18378871..18378956, 18379039..18379257,18380489..18380710,18381903..18382003, 18382291..18382594)) /locus_tag="TCM_044642" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 3" /protein_id="EOY19518.1" /db_xref="Phytozome:POPTR_0001s07300.1" /db_xref="TAIR:AT3G54380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHV9" /translation="MDESGRRRQQWRNHPSSSSSSTGHTRFRSQQYSSNPTKTTRSSN FVPRSTTTTGTTPHNTRNPGYVPKWKSVSNANNQQEGETEAGEEVGSIVGTCPFMCPE GERAQRERLRDLAIFERLNGDPRKTSAALAVKKFCRTISLKYVQASDVRPLSVLEDTL NYLLNLLDWSEHPFEVVHDFIFDRTRSIRQDLGMQNIVNDRAICMYEKMVKFHAVSHH RLQNCGSSSISSLQYLNMEQLMKTLASLYTLYEANHSSNSISENEAEFRSFYVLLHLD SKSQQREESLSFWFRRVPSLVMKSKEMHFARQVLRFYRMGNYRSFLCTVSAEASYLQY CIIEPYVNEVRALAVSYINNCCYKLHPYPLEHLSKLLMMKESDMESFCHACGLKTLSD DGGNKLLPTKQTTFCNPKGSFQSCSILGLEQYQRQTAA" CDS complement(join(18373761..18373776,18377110..18377264, 18377359..18377451,18378642..18378738,18378871..18378956, 18379039..18379257,18380489..18380710,18381903..18382003, 18382291..18382594)) /locus_tag="TCM_044642" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 3" /protein_id="EOY19519.1" /db_xref="Phytozome:POPTR_0001s07300.1" /db_xref="TAIR:AT3G54380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHV9" /translation="MDESGRRRQQWRNHPSSSSSSTGHTRFRSQQYSSNPTKTTRSSN FVPRSTTTTGTTPHNTRNPGYVPKWKSVSNANNQQEGETEAGEEVGSIVGTCPFMCPE GERAQRERLRDLAIFERLNGDPRKTSAALAVKKFCRTISLKYVQASDVRPLSVLEDTL NYLLNLLDWSEHPFEVVHDFIFDRTRSIRQDLGMQNIVNDRAICMYEKMVKFHAVSHH RLQNCGSSSISSLQYLNMEQLMKTLASLYTLYEANHSSNSISENEAEFRSFYVLLHLD SKSQQREESLSFWFRRVPSLVMKSKEMHFARQVLRFYRMGNYRSFLCTVSAEASYLQY CIIEPYVNEVRALAVSYINNCCYKLHPYPLEHLSKLLMMKESDMESFCHACGLKTLSD DGGNKLLPTKQTTFCNPKGSFQSCSILGLEQYQRQTAA" CDS complement(join(18374297..18374324,18377110..18377264, 18377359..18377451,18378642..18378738,18378871..18378956, 18379039..18379257,18380489..18380710,18381903..18382003, 18382291..18382594)) /locus_tag="TCM_044642" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 1" /protein_id="EOY19516.1" /db_xref="Phytozome:POPTR_0001s07300.1" /db_xref="TAIR:AT3G54380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHV9" /translation="MDESGRRRQQWRNHPSSSSSSTGHTRFRSQQYSSNPTKTTRSSN FVPRSTTTTGTTPHNTRNPGYVPKWKSVSNANNQQEGETEAGEEVGSIVGTCPFMCPE GERAQRERLRDLAIFERLNGDPRKTSAALAVKKFCRTISLKYVQASDVRPLSVLEDTL NYLLNLLDWSEHPFEVVHDFIFDRTRSIRQDLGMQNIVNDRAICMYEKMVKFHAVSHH RLQNCGSSSISSLQYLNMEQLMKTLASLYTLYEANHSSNSISENEAEFRSFYVLLHLD SKSQQREESLSFWFRRVPSLVMKSKEMHFARQVLRFYRMGNYRSFLCTVSAEASYLQY CIIEPYVNEVRALAVSYINNCCYKLHPYPLEHLSKLLMMKESDMESFCHACGLKTLSD DGGNKLLPTKQTTFCNPKGSFQSCSILGLEQYQRFEEFVRCL" CDS complement(join(18376100..18376133,18377110..18377264, 18377359..18377451,18378642..18378738,18378871..18378956, 18379039..18379257,18380489..18380710,18381903..18382003, 18382291..18382594)) /locus_tag="TCM_044642" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 2" /protein_id="EOY19517.1" /db_xref="Phytozome:POPTR_0001s07300.1" /db_xref="TAIR:AT3G54380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHV9" /translation="MDESGRRRQQWRNHPSSSSSSTGHTRFRSQQYSSNPTKTTRSSN FVPRSTTTTGTTPHNTRNPGYVPKWKSVSNANNQQEGETEAGEEVGSIVGTCPFMCPE GERAQRERLRDLAIFERLNGDPRKTSAALAVKKFCRTISLKYVQASDVRPLSVLEDTL NYLLNLLDWSEHPFEVVHDFIFDRTRSIRQDLGMQNIVNDRAICMYEKMVKFHAVSHH RLQNCGSSSISSLQYLNMEQLMKTLASLYTLYEANHSSNSISENEAEFRSFYVLLHLD SKSQQREESLSFWFRRVPSLVMKSKEMHFARQVLRFYRMGNYRSFLCTVSAEASYLQY CIIEPYVNEVRALAVSYINNCCYKLHPYPLEHLSKLLMMKESDMESFCHACGLKTLSD DGGNKLLPTKQTTFCNPKGSFQSCSILGLEQYQRGGGIRTLLFR" gene 18383505..18395616 /locus_tag="TCM_044643" /note="dbxref CacaoGD:Thecc1EG044643" mRNA join(18383505..18383680,18383784..18383870, 18384084..18384216,18384373..18384439,18384997..18385144, 18385229..18385364,18385454..18385700,18385797..18385982, 18386078..18386203,18386316..18386702,18386772..18386879, 18386976..18387752,18388522..18388663,18388797..18389968, 18390778..18390987,18391879..18392374,18392979..18395616) /locus_tag="TCM_044643" /product="Global transcription factor group B1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s02900.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02900.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5501t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5501t3" CDS join(18383650..18383680,18383784..18383870, 18384084..18384216,18384373..18384439,18384997..18385144, 18385229..18385364,18385454..18385700,18385797..18385982, 18386078..18386203,18386316..18386702,18386772..18386879, 18386976..18387752,18388522..18388663,18388797..18389968, 18390778..18390987,18391879..18392374,18392979..18393379) /locus_tag="TCM_044643" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Global transcription factor group B1 isoform 1" /protein_id="EOY19521.1" /db_xref="Phytozome:POPTR_0016s02900.1" /db_xref="TAIR:AT1G65440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80815" /translation="MGKNVVSDEEDELEVDEEGEPIEGDRLNDRDPDDEDEEDEEGQD EYENDGFIVDDVEDEEVDEDEEREDSDEERRKKKKKRKKKEAEDLDEDDYELLRENDV NVPKGSKKFKRLKKAQRDFDEERFGSDEEFDGSIKGGVTAEEKLKRTLFGDDDGQPLE DIPEDEVQIDEEEDGDMGEEDDMADFIVDEDDLDEHGASVRRKKLKKNKSRQAPGVTS SALLEAQEIFGDVDELLQLRKQGLDSSEWRERRLEDQFEPTVLSEKYMTEKDDQIRMT DIPERMQISEESTGTPPIDEMSIIEESTWILHQLIIGAVPLFGKEGQDLSINREDVMR FLELTHVQKLDIPFIATYRKEQCLSLLKDPEQHEVDDVDQDKSEKTPTIKWHRVLWAI QDLDRKWLLLQKRKTGLQSHYSKRFEEESRRVYDETRLNLNQQLFESILKALKDADSE REVDDVDAKFNLHFPPGEVGVDEGQYKRPKRRSQYSICNKAGLWMVASKFGYSAEQLG SQLSLEKMNDELEDAKETPEEMASNFTCAMFETPQAVLKGARHMAAVEISCEPSVKKC VRGIYMENAVVSTIPTPDGKIAIDSFHQFAGVNWLREKPLSRFDDAQWLLIQKAEEEK LLQVTIKLPEKCLDELNKEFNVYLSNGVSKSAQQWNEQRQLILKDALFGFLLSSMEKE ARSLLTSRAKNWLLLEYGKVLWNKVSVGPYQRKENDINSDEEAAPRVMACCWGPGKPA TTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQQRVLKFMTDHQPHVVVLGAV NLSCTRLKDDIYEIIFKMVEENPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPG QSGIVKRAVAVGRYLQNPLAMVATLCGPGKEILSWKLSPLENFLTADEKYGMVEQVLV DVTNQVGLDVNLATSHEWLFAPLQFISGLGPRKAASLQRSLVRVGTIFTRKDFVTTHG LGKKVFVNAVGFLRVRRSGLAANSSQFIDLLDDTRIHPESYLLAQELAKDVYDEDLKG DNDEEDALEMAIEQVRDRPSLLKSLRLDKYLESKERKNKRETFEDIRRELIQGFQDWR KQYKEPSQDEEFFMISGETEDTLTEGRIVQATVRRVQGGRAICVLESGLTGMIMKEDY ADDWRDIIELSDRLHEGDILTCKIKSIQKNRYQVFLVCKDSEMRSNRYQHVQNLDPYY HEERSSLQSEQEKARKEKELAKKHFKPRMIVHPRFQNITADEAMEYLSDKDPGESIIR PSSRGPSYLTLTLKVYDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEV MDRYVDPLVSHLKAMLSYRKFRRGTKTEVDELLRIEKSEYPMRIVYCFGISHEHPGTF ILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHESAPSIRSVA AMVPMRSPASGGSAGASMGSGWGGSTNEGGWRGHSFDRGQSSTPGSRTGRNDYRNSGS RDGHPSGLPRPYGGRGRGRGPYNSSRGHEGQDSSYDAPKWDSGAKKGDDGWGNFPGAK VQNSPGREAFPGGWGGGGNESGSGSGSGWGGGGNESGSGSGGGWGGDNSGWGQASAGT DNGGSGW" mRNA join(18383842..18383870,18384084..18384216, 18384373..18384439,18384997..18385144,18385229..18385364, 18385454..18385700,18385797..18385982,18386078..18386203, 18386316..18386702,18386772..18386879,18386976..18387752, 18388522..18388663,18388797..18389968,18390778..18390987, 18391879..18392104,18392886..18394194) /locus_tag="TCM_044643" /product="Global transcription factor group B1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s02900.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025815001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc24t21; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5501t3" CDS join(18385291..18385364,18385454..18385700, 18385797..18385982,18386078..18386203,18386316..18386702, 18386772..18386879,18386976..18387752,18388522..18388663, 18388797..18389968,18390778..18390987,18391879..18392104, 18392886..18393379) /locus_tag="TCM_044643" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Global transcription factor group B1 isoform 2" /protein_id="EOY19522.1" /db_xref="Phytozome:GSVIVT01025815001" /db_xref="TAIR:AT1G65440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80815" /translation="MGEEDDMADFIVDEDDLDEHGASVRRKKLKKNKSRQAPGVTSSA LLEAQEIFGDVDELLQLRKQGLDSSEWRERRLEDQFEPTVLSEKYMTEKDDQIRMTDI PERMQISEESTGTPPIDEMSIIEESTWILHQLIIGAVPLFGKEGQDLSINREDVMRFL ELTHVQKLDIPFIATYRKEQCLSLLKDPEQHEVDDVDQDKSEKTPTIKWHRVLWAIQD LDRKWLLLQKRKTGLQSHYSKRFEEESRRVYDETRLNLNQQLFESILKALKDADSERE VDDVDAKFNLHFPPGEVGVDEGQYKRPKRRSQYSICNKAGLWMVASKFGYSAEQLGSQ LSLEKMNDELEDAKETPEEMASNFTCAMFETPQAVLKGARHMAAVEISCEPSVKKCVR GIYMENAVVSTIPTPDGKIAIDSFHQFAGVNWLREKPLSRFDDAQWLLIQKAEEEKLL QVTIKLPEKCLDELNKEFNVYLSNGVSKSAQQWNEQRQLILKDALFGFLLSSMEKEAR SLLTSRAKNWLLLEYGKVLWNKVSVGPYQRKENDINSDEEAAPRVMACCWGPGKPATT FVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQQRVLKFMTDHQPHVVVLGAVNL SCTRLKDDIYEIIFKMVEENPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQS GIVKRAVAVGRYLQNPLAMVATLCGPGKEILSWKLSPLENFLTADEKYGMVEQVLVDV TNQVGLDVNLATSHEWLFAPLQFISGLGPRKAASLQRSLVRVGTIFTRKDFVTTHGLG KKVFVNAVGFLRVRRSGLAANSSQFIDLLDDTRIHPESYLLAQELAKDVYDEDLKGDN DEEDALEMAIEQVRDRPSLLKSLRLDKYLESKERKNKRETFEDIRRELIQGFQDWRKQ YKEPSQDEEFFMISGETEDTLTEGRIVQATVRRVQGGRAICVLESGLTGMIMKEDYAD DWRDIIELSDRLHEGDILTCKIKSIQKNRYQVFLVCKDSEMRSNRYQHVQNLDPYYHE ERSSLQSEQEKARKEKELAKKHFKPRMIVHPRFQNITADEAMEYLSDKDPGESIIRPS SRGPSYLTLTLKVYDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMD RYVDPLVSHLKAMLSYRKFRRGTKTEVDELLRIEKSEYPMRIVYCFGISHEHPGTFIL TYIRSTNPHHEYIGSFAYCTVKGSSSLVACLLFLSNLWLVLFGTVGRNDYRNSGSRDG HPSGLPRPYGGRGRGRGPYNSSRGHEGQDSSYDAPKWDSGAKKGDDGWGNFPGAKVQN SPGREAFPGGWGGGGNESGSGSGSGWGGGGNESGSGSGGGWGGDNSGWGQASAGTDNG GSGW" gene 18393494..18399224 /locus_tag="TCM_044644" /note="dbxref CacaoGD:Thecc1EG044644" mRNA 18393494..18395788 /locus_tag="TCM_044644" /product="Mitochondrial transcription termination factor family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29686.m000886" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044645t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage" CDS 18394039..18395217 /locus_tag="TCM_044644" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044645t1" /codon_start=1 /product="Mitochondrial transcription termination factor family protein, putative isoform 1" /protein_id="EOY19523.1" /db_xref="Phytozome:POPTR_0001s07220.1" /db_xref="TAIR:AT5G07900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLT9" /translation="MRKFLQIKPLISSKTQWRATIPLRDLPCLIRNRFLQTDAIPSPA SEPPPLGSALSLSKRLRIPQNNSPNSSSVLNCLKSHGFEDTQIAKLVRKRPDILNCKV QTKLKPKLRYLIQKGFTGKLLPDLILSNPFLLFRGLDSQIRPSFEFLRPFLNDEEMFV ALKRASWLLTISLNSVLQPNVDLLISEGVPASRISKLLILQPRVLLQSHDRMVYAVKT IKEIGIEPKETRFIHALRVICSMSKSNWKKKVEVFMSLGWSKEEVLNTFKKDPLCLAC SENKLRYLMDFYVNTMKLDARAIIAYPKLLGYSVERRVHARYIVLKALESMKLIKDDK KIVWVIKLPEKKFLEEYIAKHIDKVPGLLDMYHGAVKPRKTIRGKKEKFDPKSASLAL " mRNA join(<18394284..18395843,18398781..18399224) /locus_tag="TCM_044644" /product="Mitochondrial transcription termination factor family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29686.m000886" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044645t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07200.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is none, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc24t16; inference alignment:Newbler:10:TSA:cgbaP1_g00708t00001" CDS <18394285..18395217 /locus_tag="TCM_044644" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG044645t1" /codon_start=1 /product="Mitochondrial transcription termination factor family protein, putative isoform 2" /protein_id="EOY19524.1" /db_xref="Phytozome:POPTR_0001s07200.1" /db_xref="TAIR:AT5G07900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLT9" /translation="EDTQIAKLVRKRPDILNCKVQTKLKPKLRYLIQKGFTGKLLPDL ILSNPFLLFRGLDSQIRPSFEFLRPFLNDEEMFVALKRASWLLTISLNSVLQPNVDLL ISEGVPASRISKLLILQPRVLLQSHDRMVYAVKTIKEIGIEPKETRFIHALRVICSMS KSNWKKKVEVFMSLGWSKEEVLNTFKKDPLCLACSENKLRYLMDFYVNTMKLDARAII AYPKLLGYSVERRVHARYIVLKALESMKLIKDDKKIVWVIKLPEKKFLEEYIAKHIDK VPGLLDMYHGAVKPRKTIRGKKEKFDPKSASLAL" gene 18396134..18398668 /locus_tag="TCM_044645" /note="dbxref CacaoGD:Thecc1EG044645" mRNA join(18396134..18396489,18396833..18398052, 18398474..18398668) /locus_tag="TCM_044645" /product="Mitochondrial transcription termination factor family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07220.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044644t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07220.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc16902t2" CDS join(18396467..18396489,18396833..18398036) /locus_tag="TCM_044645" /note="paralog of Thecc1EG044644t1" /codon_start=1 /product="Mitochondrial transcription termination factor family protein, putative" /protein_id="EOY19525.1" /db_xref="Phytozome:POPTR_0001s07220.1" /db_xref="TAIR:AT5G07900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLT9" /translation="MVSNVLSGRVLGIQPAMHKLLQVKPLITSQTLWRATIPSTNLLS LIQKRFLQTQAIPSSASEPPPLGSAPSLSKRLQILQTNSPNSSSVLNCLKSHGFEDTQ IAKLVGKRPDILNCKVHTKLVPKLRYLIEKGFTGKLLPDLILSNPLILFRGLDSHIKP SFEFLRPFLNGEEMLVAIKRSSWLLTISRNAILQPNVDLLIRAGIPASRISKLLILQP RVISQSNDRMVYAIKTVKQIGLEPKVPRFIHALRVICSMSESNWKKKVEVFMSLGWSK EEVLNTFKKDPPCLACSENKLRCLMDFYVNTMKSDVKTIIAYSKLLHYSVEKRVHARY IVLKVLESMKLIKEYKKIVWAIVLSEKKFLEAYITKHIDKVPELLDMYHGAVKRRKTI RGKREKFDPKSASLAL" gene complement(18399252..18400809) /locus_tag="TCM_044646" /note="dbxref CacaoGD:Thecc1EG044646" mRNA complement(join(18399252..18399983,18400050..18400809)) /locus_tag="TCM_044646" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(join(18399797..18399983,18400050..18400234)) /locus_tag="TCM_044646" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19526.1" /translation="MCIAINFKLDMSNSTLMGLLEVTLVSQVREDILRNEDGGNPGYA PFESDSYNAVKWIQSHKRQIRHIPRPANEAADNLAPQDLLWVNSEAAQSSRVSPATNI EDDASCQVVDLSYWVYRVELS" mobile_element 18408431..18408676 /note="source:scaffold_4_CACTA_0494 2323 4037" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18408677..18410210 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18938 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18410211..18411194 /note="source:CACAO_Mutator_E592_scaffold_3 18276 19277" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18411095..18411840 /note="source:CACAO_MITE88_scaffold_5 1 756" /mobile_element_type="transposon:TIR/MITE" mobile_element 18411471..18412627 /note="source:CACAO_Mutator_E592_scaffold_3 19250 20154" /mobile_element_type="transposon:TIR/Mutator" gene complement(18415537..18416579) /locus_tag="TCM_044648" /note="dbxref CacaoGD:Thecc1EG044648" mRNA complement(18415537..18416579) /locus_tag="TCM_044648" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS complement(18416168..18416416) /locus_tag="TCM_044648" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19527.1" /translation="MEKSNKLLCVINDILLGSLIYLKRKIIRNLYIFMYGLLSSYGAE LVHKLASFVNNKRPAMKGTKVIRQASDHGSKPHISRAH" mobile_element 18417334..18418388 /note="source:CACAO_M_E43890_F17_scaffold_5 1 1074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18419516..18421109 /note="source:CACAO_M_E57461_F236_scaffold_9 1 1658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18421513..18421649) /note="source:CACAO_M_E3884_F22_scaffold_1 12993 13129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18421619..18421635 /note="source:CACAO_Again_on_E84_scaffold_3 383 447" /mobile_element_type="transposon:TIR/hAT" mobile_element 18421636..18421681 /note="source:INTACT904F_F49_scaffold_6-int 5707 5752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18421649..18421693 /note="source:CACAO_M_E36454_F98_scaffold_5 7904 7947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18421650..18421682) /note="source:CACAO_M_E42040_F98_scaffold_5 2667 2699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18421672..18423343) /note="source:CACAO_M_S_E89656_F313_scaffold_8 928 2600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18423038..18424384 /note="source:INTACT904F_F49_scaffold_6-int 7545 8825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18423338..18425311) /note="source:INTACT786_F333_scaffold_7-int 2788 4601" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18425312..18425355) /note="source:CACAO_M_E50239_F322_scaffold_7 6812 6848" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18425334..18427005) /note="source:CACAO_M_S_E89656_F313_scaffold_8 928 2600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18426701..18428021 /note="source:INTACT904F_F49_scaffold_6-int 7545 8828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18428019..18428486) /note="source:CACAO_M_E3884_F22_scaffold_1 12529 12997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18428217..18429550) /note="source:scaffold_6_CACTA_0709 4350 5691" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18429548..18429721) /note="source:scaffold_6_CACTA_0709 4049 4230" /mobile_element_type="transposon:TIR/CACTA" gene complement(18431252..18437217) /locus_tag="TCM_044651" /note="dbxref CacaoGD:Thecc1EG044651" mRNA complement(join(18431252..18431969,18432062..18432385, 18435369..18435487,18436653..18437217)) /locus_tag="TCM_044651" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044626t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5310t1" CDS complement(join(18431946..18431969,18432062..18432385, 18435369..18435487,18436653..18436770)) /locus_tag="TCM_044651" /note="paralog of Thecc1EG044626t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19528.1" /translation="MIAHRKGKKLICKPCGVPVGIPDNECQSRRRGDCHGPEAVVTSE LACGPMPSIVATCVSSSEPKGYREMKSDLKELKIEYISIVSIQVLKHKQKQSNSQDCR NLITKTIMATNPSTNVQFTNSSGEILYLNAVNIWDGPPQSYIPLVIQVGPTVGVTQNG SVVGVEYKLKDNKSLIVAWTNNLVSNKVYAQILM" mobile_element 18436266..18436636 /note="source:scaffold_1_CACTA_0028 4612 6764" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18439732..18439999 /note="source:scaffold_1_CACTA_0028 6765 8334" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18441597..18442058 /note="source:INTACT556_F252_scaffold_2-int 1 506" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18442953..18443364 /note="source:INTACT556_F252_scaffold_2-int 1402 1829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18443146..18444550) /note="source:INTACT458_F219_scaffold_7-int 14991 16378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18444551..18447401) /note="source:CACAO_M_E71412_F87_scaffold_10 1 2794" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18447402..18458247 /note="source:INTACT556_F252_scaffold_2-int 2991 13863" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18455579..18457353 /locus_tag="TCM_044654" /note="dbxref CacaoGD:Thecc1EG044654" mRNA 18455579..18457353 /locus_tag="TCM_044654" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002386t1" /inference="similar to AA sequence:Phytozome:Glyma06g26140.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage" CDS 18455598..18456671 /locus_tag="TCM_044654" /note="paralog of Thecc1EG002386t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19529.1" /db_xref="Phytozome:Glyma06g26140.1" /translation="MCCALAWTAHRLRQYMLYHTSLLIAKLDPIKYIFEKPSLSGRVV RWQVLLSEYDIVYVSQKAIKGSAIVDFLVKRVEEDYELMDFEFPDKDLMSVCQTNKEE SKEKENWKMFFDGASNALGHGIGVVLVSPEGDHYPVIAKLNFYCTNNVVEYETCFMGL QEAIERKIHILEVYGDSGWVIYQLRGEWEARDSKLIQYHKYVSKLIENFNKICFTHLP REENQMADALATLAAMFKVGTDVKIQPIMITLRECPAHCSSVEEEVDGKLWYHDIVHY LKFQQYPKQNSENDKKIIRRLAMNFFLDGDILYKRSRDQVLLRCVDSAEARRIVEEVH EGICGAHASGHMLAKQVMRAGYY" mobile_element 18458243..18458476 /note="source:INTACT556_F252_scaffold_2-int 1801 2045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18458271..18459654) /note="source:INTACT458_F219_scaffold_7-int 1 1387" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18460711..18463956 /note="source:INTACT83_F5_scaffold_9-int 813 4033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18463999..18465569 /note="source:INTACT83_F5_scaffold_9-int 3985 5547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18465988..18468931) /note="source:CACAO_M_E71411_F86_scaffold_10 1 2925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18478722..18479004) /note="source:CACAO_M_S_E66657_F76_scaffold_5 8242 8525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18481530..18483389) /note="source:CACAO_M_S_E121775_F4_scaffold_10 1 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18491250..18499861 /note="source:CACAO_Mutator_E1149_scaffold_5 1673 13722" /mobile_element_type="transposon:TIR/Mutator" gene 18501472..18504062 /locus_tag="TCM_044659" /note="dbxref CacaoGD:Thecc1EG044659" mRNA join(18501472..18501952,18502039..18502634, 18502739..18504062) /locus_tag="TCM_044659" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS join(18501490..18501952,18502039..18502634, 18502739..18503131) /locus_tag="TCM_044659" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19530.1" /translation="MSAFNSRSYSEVVVGPGKTIAKNHGKERGNDKSQPEVRMQDTKK RREVISQSKKETGGKRKTKQHNGAKMVTIKTNIPEEEMLWIKCSAIGKLKVKADCERI QKGLSREGIHAQERILDDQSVLVTFEELGIVEAMLDHYLEQFDGWFEYLALVSYRRML GEFIATDKSTFKRERFVEAFILVKVRSRSMIPDYVTIKVEGKFHIICISIVGSESQCK LEAYWKRKKKLLEETSGGYGVDSRVVASLVHGDGTFPVNRKRGTVMSDCVKEFKLEGD LTSEGREGPKERVFGQKRVDGKSDRLRVIDTREDMGEKSEKGTTESVKQVKELVVLSR YKKVGRETGTLDSRMEKKKKTARRKENSKIDMEDQSLSGEWAKEIQIGPLEGKKEIDK LSSNAKMGSSSQIPRKKELEPGKVSVVALMDQVKQGPKDQVKQGTEGLNLVNDEKENQ KSEMNKEGRAKHDDIWGNEEYRLRMGRKRLTKV" gene complement(18504521..18505941) /locus_tag="TCM_044660" /note="dbxref CacaoGD:Thecc1EG044660" mRNA complement(join(18504521..18504914,18505025..18505177, 18505703..18505941)) /locus_tag="TCM_044660" /product="Type-b response regulator, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038943t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s10280.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(join(18504727..18504914,18505025..18505177, 18505703..18505853)) /locus_tag="TCM_044660" /note="paralog of Thecc1EG038943t1" /codon_start=1 /product="Type-b response regulator, putative" /protein_id="EOY19531.1" /db_xref="Phytozome:POPTR_0018s10280.1" /db_xref="TAIR:AT4G31920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IM11" /translation="MEESFLDKHPENSVVEVDDDVVHELRALTIDAQIFSLHYLCTVL HKCNYRIKTTTSAVEALEILRANKYEFDIVLVDVDSASIKGFKLLEITELEMYLPVIM VTGDGSLENIVNGLIYGAVDYIIKPVGVREINNTIWHRVTLNNTWVLNNLRTPKNHRT TKI" gene 18510369..18513803 /locus_tag="TCM_044661" /note="dbxref CacaoGD:Thecc1EG044661" mRNA join(18510369..18510421,18511437..18511587, 18511688..18511830,18512339..18512503,18513415..18513803) /locus_tag="TCM_044661" /product="Mediator of RNA polymerase II transcription subunit 11" /inference="alignment:exonerate-protein:2:frave:gene14291" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044665t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(18511511..18511587,18511688..18511830, 18512339..18512503,18513415..18513614) /locus_tag="TCM_044661" /note="paralog of Thecc1EG044665t1" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 11" /protein_id="EOY19532.1" /translation="MAMAKYFEGQASPITGIGEENKKWTCFCDEYRRWNLESVKQLLP QNLILMISAMMIDPSGEEMDDSYWLHSSTDGSAKGQLGLAAAGGLIRDSSETWLTRFT YKIGISFSLTAELWAIYYGLMICWSKESVMTVFEMVRYHVTRVLGCLIVYCLGAHLWM AFFAITLNMSVTYQNPCNHLSRGEPLAPSDFNTY" mobile_element 18518732..18524176 /note="source:CACAO_M_E14113_F106_scaffold_3 10685 19881" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18524578..18527548) /note="source:CACAO_M_S_E121774_F134_scaffold_10 1 2971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18527736..18527873) /note="source:INTACT649F_F368_scaffold_5-int 14334 14472" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(18529163..18535557) /locus_tag="TCM_044663" /note="dbxref CacaoGD:Thecc1EG044663" mRNA complement(join(18529163..18529454,18529547..18529689, 18530255..18530646,18535174..18535557)) /locus_tag="TCM_044663" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044674t1" /inference="similar to AA sequence:Phytozome:Glyma16g28520.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7788t7" CDS complement(join(18529266..18529454,18529547..18529689, 18530255..18530646,18535174..18535229)) /locus_tag="TCM_044663" /note="paralog of Thecc1EG044674t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19533.1" /db_xref="Phytozome:Glyma16g28520.1" /translation="MVYICISLVHNFHSRENKNLSDNQLEGSILDEITIFRNLISLDF SCNLLNRTLPSWLYTASSLKCMSLSNNELSSDIKEFQYKPLEKIFFRNNRLKGHLPSS ISQLVNLTCVSLSSNNLSGIVEFDMFSKLKNLQYLDLSYNYLSLNTNGSVVPLVIDVG SQVEFNQVGSLVGFECKFGETCCTLVVAWSNNGVSNKVYAQILPAGLGTHTVEWAQIK AKLEKSGSKCNTGNQFGYKYTLEIDPKSGAPTMKGTFTTVI" mobile_element complement(18530656..18531718) /note="source:CACAO_M_E71410_F22_scaffold_10 1 1063" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18541487..18593893) /locus_tag="TCM_044664" /note="dbxref CacaoGD:Thecc1EG044664" mRNA complement(join(18541487..18541621,18590850..18591574, 18591995..18592104,18593720..18593893)) /locus_tag="TCM_044664" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" gene 18543082..18550396 /locus_tag="TCM_044665" /note="dbxref CacaoGD:Thecc1EG044665" mRNA join(18543082..18543731,18547615..18547694, 18548412..18548706,18549949..18550396) /locus_tag="TCM_044665" /product="Mediator of RNA polymerase II transcription subunit 11" /inference="alignment:exonerate- protein:2:ricco:29842.m003514" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044670t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040776" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc8805t1" CDS join(18543389..18543731,18547615..18547694, 18548412..18548706,18549949..18550148) /locus_tag="TCM_044665" /note="paralog of Thecc1EG044670t1" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 11" /protein_id="EOY19535.1" /db_xref="Phytozome:PGSC0003DMP400040776" /db_xref="TAIR:AT3G01435.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ID77" /translation="MDSPAQNTSLQRLQNVEKRIVRVLDLAGGVMDELANPTGPRKEF INNHCREFMKMIKDIQVTLRDEIKSACEYRPFEKCDYSSRISNEICCRKLEYVLSQLE AMKQTVDEYQGEAGFTVRFGKTFFDFIPTKVKNNNSKVKARPVLLQGLGRRIRNGHGT KFWTESWLPCGPLLDHVGVDLSEAEAELPVASFCDEYGRWNLESVKQLLPQNLILMIS AMMIDPSGEEMDDSYWLHSSTESVMTVFEMVRYHVTRVLGCLIVYCLGAHLWMAFFAI TLNMSVTYQNPCNHLSRGEPLAPSDFNTY" mobile_element 18544223..18544252 /note="source:CACAO_Mutator_E161_scaffold_1 4041 4070" /mobile_element_type="transposon:TIR/Mutator" gene 18545063..18574289 /locus_tag="TCM_044666" /note="dbxref CacaoGD:Thecc1EG044666" mRNA join(18545063..18545347,18573836..18574289) /locus_tag="TCM_044666" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.31 coverage" CDS join(18545247..18545347,18573836..18573935) /locus_tag="TCM_044666" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19536.1" /translation="MPNHNKPYLAHEFLIQLHIMYVFRIHNKILTVADEKKKSHLGVL KILLKDKFDKFFYSTKNDTKEK" gene complement(18550472..18562334) /locus_tag="TCM_044667" /note="dbxref CacaoGD:Thecc1EG044667" mRNA complement(join(18550472..18551254,18561986..18562139, 18562234..18562334)) /locus_tag="TCM_044667" /product="Transcription factor-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044633t1" /inference="similar to AA sequence:frave:gene17721" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(18550522..18551031) /locus_tag="TCM_044667" /note="dbxref frave:gene17721; paralog of Thecc1EG044633t1" /codon_start=1 /product="Transcription factor-like protein" /protein_id="EOY19537.1" /translation="MFVGFGFGPSDRSLMCYLFSKVTSKSMLHFDQDQIKDFDLYGEK EPWEIWDLYGGCNRQSGEDLYFFTKLKKKSQNGSRINRSVGMGTWMGEDSGKPIYSQL SAIQPLVFKKRLRYEGGVPHQVGQWIMHEYSLNTVLVPGNDQGYVLCRLRKNDRDEKK AEKRRKLIT" mobile_element complement(18556061..18557469) /note="source:INTACT649F_F368_scaffold_5-int 7435 8856" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(18561763..18581302) /locus_tag="TCM_044669" /note="dbxref CacaoGD:Thecc1EG044669" mRNA complement(join(18561763..18562139,18580795..18581302)) /locus_tag="TCM_044669" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc2939t1" CDS complement(join(18561945..18562139,18580795..18581265)) /locus_tag="TCM_044669" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19538.1" /translation="MAVVPAVALAVQHTPGVSVPGWQLHGNLVSRTHETRALVSTPFQ FHRNWRPLIYTKRHKTMAATVPKTPQSAAKNPEYTFVNFTNSSGQTLVLDEHVIWKRA SGLPTPIHKPYQFSHIAEKLSYHRLIGSVVGLKFHIRDSNCTLIVAWSHTSVSNKVYA EILPAGIVKNWSQIKKSLAYSKSQFDTYNNKSKSQHGYRCILEIHPTSGTPTVKATFT KAL" mobile_element complement(18563397..18563465) /note="source:scaffold_7_CACTA_0789 3161 3228" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18563853..18563971 /note="source:scaffold_5_CACTA_0596 12442 12562" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18563993..18564100 /note="source:scaffold_5_CACTA_0596 952 1061" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18564824..18565432) /note="source:CACAO_M_E3248_F5_scaffold_1 1650 2246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18569832..18570230) /note="source:CACAO_M_S_E121769_F205_scaffold_10 1 399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18575574..18576129 /note="source:INTACT172_F47_scaffold_2-int 4587 5152" /mobile_element_type="retrotransposon:LTR/Copia" gene 18581422..18597999 /locus_tag="TCM_044670" /note="dbxref CacaoGD:Thecc1EG044670" mRNA join(18581422..18581502,18589930..18591244, 18597717..18597999) /locus_tag="TCM_044670" /product="Mediator of RNA polymerase II transcription subunit 11" /inference="alignment:exonerate- protein:2:ricco:29842.m003514.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044665t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040776" /note="quality class is medium, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc8805t1_G2" mobile_element 18583170..18583288 /note="source:scaffold_5_CACTA_0596 12442 12562" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18583313..18583417 /note="source:scaffold_5_CACTA_0596 12442 12548" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18583533..18584554 /note="source:scaffold_5_CACTA_0596 3956 4987" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18584160..18584773) /note="source:CACAO_M_E3248_F5_scaffold_1 1650 2246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18589167..18589502) /note="source:CACAO_M_S_E121769_F205_scaffold_10 64 399" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 18590530..18590883 /locus_tag="TCM_044670" /note="paralog of Thecc1EG044665t1" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 11" /protein_id="EOY19539.1" /db_xref="Phytozome:PGSC0003DMP400040776" /db_xref="TAIR:AT3G01435.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ID77" /translation="MDSPAQNTSLQRLQNVEKRIVRVLDLAGGVMDELANPTGPRKEF INNHCREFMKMIKDIQVTLRDEIKSACEYRPFEKCDYSSRISNEICCRKLEYVLSQLE AMKQTVDEYQGEGTI" CDS complement(join(18591428..18591574,18591995..18592104, 18593720..18593816)) /locus_tag="TCM_044664" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19534.1" /translation="MIENAEFTHIADAKGSVIGLVGGLRYIIGHSNWRSFNKWLTLKK EYLAKTSVLKSTVNMKSREVKQEDEERTNEGAAEEKPTVAKEELRAQESAENQREESR NSTELEMHKESEKTQ" gene 18594767..18596950 /locus_tag="TCM_044671" /note="dbxref CacaoGD:Thecc1EG044671" mRNA join(18594767..18595084,18595842..18595933, 18596027..18596950) /locus_tag="TCM_044671" /product="Ribonuclease H protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008198t1" /inference="similar to AA sequence:frave:gene27481" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(18594974..18595084,18595842..18595933, 18596027..18596690) /locus_tag="TCM_044671" /note="dbxref frave:gene27481; paralog of Thecc1EG008198t1" /codon_start=1 /product="Ribonuclease H protein, putative" /protein_id="EOY19540.1" /translation="MDILIIIFITAGFTVRFGKTFFDFIPTKVKNNNSKVKGLGRRIR NGHGTKFWTESWLPCGPVLDQVRVXXSEAEAELPMASFCDEYRRWNLESVKQLLPQNL ILMISAMMIDPSGEEMDDSYWLHSSTGMFTIKSTYEMQISDPIHQTICWKKVWALNSS NKVRMFVWRVLHDSLPTASWLQNRGLVYSPVCLSCGYSEEQLIHVLHDCSRVKRTWLS FLLDLVTEDFFLQGPQVWILNNMQSTVFLEGIPWGTIFIHALWYFWYWRNLSIFDGKF SWPYNAKQLIWT" gene 18600619..18602098 /locus_tag="TCM_044672" /note="dbxref CacaoGD:Thecc1EG044672" mRNA join(18600619..18601009,18601681..18602098) /locus_tag="TCM_044672" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(18600714..18601009,18601681..18601954) /locus_tag="TCM_044672" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19541.1" /translation="MFVVSNWINCELEIESDSFNVVKWVQSPLQVPWRLTKPILQISN LLRNVQDWRIILVFRSANVEADSLAKSGVLRPLDFLCINSECVQVQGNVNVNIHEKPS PYRPASYCTTGLDLAAMILVLCVLVTKFLRSCWHLDTGTPVACCTANATAGLAAMIVN FVSFGYQGFYYLGYCFACDCASELAWTYA" gene complement(18601452..18642584) /locus_tag="TCM_044673" /note="dbxref CacaoGD:Thecc1EG044673" mRNA complement(join(18601452..18601799,18642029..18642584)) /locus_tag="TCM_044673" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400012529.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044621t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" mobile_element complement(18604858..18608765) /note="source:CACAO_M_S_E33139_F368_scaffold_4 2119 6068" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18606766..18610118 /note="source:CACAO_M_E14113_F106_scaffold_3 16516 19899" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18610060..18610147) /note="source:scaffold_5_CACTA_0584 3561 3659" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18610327..18610460) /note="source:scaffold_8_CACTA_0860 3895 4021" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18610842..18611008 /note="source:scaffold_3_CACTA_0383 5092 5254" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18611273..18611438 /note="source:scaffold_3_CACTA_0383 5302 5463" /mobile_element_type="transposon:TIR/CACTA" gene complement(18612006..18613033) /locus_tag="TCM_044674" /note="dbxref CacaoGD:Thecc1EG044674" mRNA complement(join(18612006..18612593,18612686..18613033)) /locus_tag="TCM_044674" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044663t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc46t5" CDS complement(join(18612405..18612593,18612686..18612997)) /locus_tag="TCM_044674" /note="paralog of Thecc1EG044663t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19543.1" /translation="MQVLKHKQKQSNTKGFRNLITKTMMAANAKYTNVKFTNSSDQIL KQNAVTIWDGPLGSVVPLVINVGSQVEFNQVGSLVGFECKFGETCCTLIVAWSNNGVS NKVYAQILPAGPGTHTVEWAQIRAKLEKSGSNYDTGNQFGYKCTLEIDPKSGTPTMKG TFTTVN" mobile_element 18617335..18618120 /note="source:INTACT785_F332_scaffold_2-int 10942 11746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18618608..18621562 /note="source:CACAO_M_E43479_F273_scaffold_5 1 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18621563..18621600 /note="source:INTACT283_F50_scaffold_9-int 10267 10306" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18621568..18623136) /note="source:CACAO_M_E11488_F17_scaffold_2 4987 6608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18625001..18626663) /note="source:CACAO_M_S_E121767_F226_scaffold_10 1 1663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18630051..18630207 /note="source:CACAO_M_S_E1495_F60_scaffold_1 49 202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18631295..18634626 /note="source:INTACT507_F234_scaffold_4-int 1 3370" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(18637955..18639163) /locus_tag="TCM_044677" /note="dbxref CacaoGD:Thecc1EG044677" mRNA complement(join(18637955..18638508,18638586..18639163)) /locus_tag="TCM_044677" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044620t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc3331t4" CDS complement(join(18638365..18638508,18638586..18639104)) /locus_tag="TCM_044677" /note="paralog of Thecc1EG044620t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19544.1" /translation="MATIPAIALAVQYAAGVPLSGCQQLRRNLVTKTHHKTIMAAKSN PAVRYETGVLVSTPCQVLDRNRESSKRVKTIMAAYPIQFATDVPESTDCNLRNFSGGE LKLDDKTFWEGLDMNAKDLPRQILDKGTPKFKHDAFGGSVIGSSGGLEYVFGGGEYKW IIAWSNSKNELNKVYTKIFKGDVVGWNEIRESLAKSDDQSSCNEFGYSSDVVIVKPAL RQ" CDS complement(18642322..18642564) /locus_tag="TCM_044673" /note="paralog of Thecc1EG044621t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19542.1" /translation="MGEDSGKPIYSQLSAIQPLGFKRRFRYEGGVPQQVGQWIMHEYS LNTTLVPENDQGYVLCRVRKNDREEKKAEKRRKLIT" gene complement(18643711..18655503) /locus_tag="TCM_044678" /note="dbxref CacaoGD:Thecc1EG044678" mRNA complement(join(18643711..18645044,18645262..18645534, 18645926..18646494,18648623..18649843,18650147..18650285, 18650765..18650847,18650931..18650992,18651175..18651301, 18651868..18652196,18653512..18653701,18653799..18653864, 18654651..18654728,18654836..18655503)) /locus_tag="TCM_044678" /product="Telomerase reverse transcriptase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s01700.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s01700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:PASA:2:TSA:puevd3b043109t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5161t1" mRNA complement(join(18643711..18644699,18644924..18645044, 18645262..18645384,18645488..18645534,18645910..18646494, 18648623..18649843,18650147..18650285,18650765..18650847, 18650931..18650992,18651175..18651301,18651868..18652196, 18653512..18653701,18653799..18653864,18654651..18654728, 18654836..18655503)) /locus_tag="TCM_044678" /product="Telomerase reverse transcriptase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s01700.1" /inference="similar to AA sequence:frave:gene26999" /note="transcript variant 1; alternatively spliced; quality class is strong-expresste, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5161t1" CDS complement(join(18644682..18644699,18644924..18645044, 18645262..18645384,18645488..18645534,18645910..18646494, 18648623..18649843,18650147..18650285,18650765..18650847, 18650931..18650992,18651175..18651301,18651868..18652196, 18653512..18653701,18653799..18653864,18654651..18654728, 18654836..18655144)) /locus_tag="TCM_044678" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene26999" /codon_start=1 /product="Telomerase reverse transcriptase, putative isoform 1" /protein_id="EOY19545.1" /db_xref="TAIR:AT5G16850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B5B378" /translation="MARKKKRSWKVPKILWRIFNEKARSLATTITCIIPPPPSQPFPI PCRCEGRSCLQCCEDPISFLLRPDDPLDYKKLLHDCFVVVNDDAPFLEFNPGRHWSQK QIVGRVIEMMLFQRPKPCNLVCTGYNKLTRSSMIVELLTSSAWDILLERVGDECMVYL LWHASIFLPLSHKKHLQVAGSPINKLCKKSSNNERKPKSGIQELNILCVFVHIDRAGK KRKGTDNSISVSKRQQCSSFSGYDIYCAGSRIQEAAAKSSNGELQRSSSQTAEKHKKF YRPFDWKRQKRHRQLNIPECRHEIISRTIFSDESCLPGNLKSPSNISQMPVQCSCYLM LKAPHLFSHWNEINRQSMFYNLECSSSVLPQELPNFSSSKRLMENIFCLSDANIRYSR VVMFYEFCGIVNGGSDLAVASLGYHSFLKLLKMLIRRSRRCKSLKLLEKYCPLSFFNQ KAVGKSSTIVESNILDKRVLKESHGVGAKEYNKILEADNVQLESTKPYCLQSQVGAFI WAVCRSIVPPDLLGTPFNWRILRRNIFKFIRLRRFEKFSMKQCMHQLKRSDFPFLLNN HTSCCLNGQVPKNGTGQKKFSEASFSIHDIKHKLFVNWIFWFFSSLVVSLVQANFYVT ESEHGKQDVFYYRKPVWEKLTDHAITCLKDRSYLELDEAAVRAIIDKRPFGFSRLRLC PKQNGVRMLANLKASSRMLEGKSCSKHKCSWMHRSLKACSRKVKSKRFKSVNSVLRGT HAVLKGLLLKEPEKLGSSVFDYNDVYRKLCPFLTTLKNVSTTVPGLFVVVADVSKAFD SIDQDKLLSIMEDVITKDEYHLQQIRQVGCSSRCLWDYENLMLVDGTVNKGSNLISSV PVRSLSSVLVDQGCSRILKKEELFSNLYEHVKRNVLQLDKKFYLQGMGIPQGSVLSSL LCSLYYGYMEKHEIFPYLEKTFEPAAEDLSTRHVFSDASDAQNSSEDAVIFPPTYLLL RFIDDFLFISTSKEQASGFLSMLRRGFPDYNCYMNEEKFCLNFDIEHQAGLLSNRIYV VDDGSSFLRWSGLLINCCSLEIQGDYTRSVFCMVFGQPLKFHSYHPLARLNIYQAFLL SAMKFHRYVSEISEIFKPFGRYCLKIIERSFRYMQRLIGKRMGSIRLGSGLSPVLKLM KEEVVWLGLNAYIEGYIQV" CDS complement(join(18644771..18645044,18645262..18645534, 18645926..18646494,18648623..18649843,18650147..18650285, 18650765..18650847,18650931..18650992,18651175..18651301, 18651868..18652196,18653512..18653701,18653799..18653864, 18654651..18654728,18654836..18655144)) /locus_tag="TCM_044678" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Telomerase reverse transcriptase, putative isoform 2" /protein_id="EOY19546.1" /db_xref="Phytozome:POPTR_0003s01700.1" /db_xref="TAIR:AT5G16850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B5B378" /translation="MARKKKRSWKVPKILWRIFNEKARSLATTITCIIPPPPSQPFPI PCRCEGRSCLQCCEDPISFLLRPDDPLDYKKLLHDCFVVVNDDAPFLEFNPGRHWSQK QIVGRVIEMMLFQRPKPCNLVCTGYNKLTRSSMIVELLTSSAWDILLERVGDECMVYL LWHASIFLPLSHKKHLQVAGSPINKLCKKSSNNERKPKSGIQELNILCVFVHIDRAGK KRKGTDNSISVSKRQQCSSFSGYDIYCAGSRIQEAAAKSSNGELQRSSSQTAEKHKKF YRPFDWKRQKRHRQLNIPECRHEIISRTIFSDESCLPGNLKSPSNISQMPVQCSCYLM LKAPHLFSHWNEINRQSMFYNLECSSSVLPQELPNFSSSKRLMENIFCLSDANIRYSR VVMFYEFCGIVNGGSDLAVASLGYHSFLKLLKMLIRRSRRCKSLKLLEKYCPLSFFNQ KAVGKSSTIVESNILDKRVLKESHGVGAKEYNKILEADNVQLESTKPYCLQSQVGAFI WAVCRSIVPPDLLGTPFNWRILRRNIFKFIRLRRFEKFSMKQCMHQLKRSDFPFLLNN HTSCCLNGQVPKNGTGQKKFSEASFSIHDIKHKLFVNWIFWFFSSLVVSLVQANFYVT ESEHGKQDVFYYRKPVWEKLTDHAITCLKDRSYLELDEAAVRAIIDKRPFGFSRLRLC PKQNGVRMLANLKASSRMLEGKSCSKHKCSWMHRSLKACSRKVKSKRFKSVNSVLRGT HAVLKGLLLKEPEKLGSSVFDYNDVYRKLCPFLTTLKNVSTTVPGLFVVVADVSKAFD SIDQDKLLSIMEDVITKDEYHLQQIRQVGCSSRCLWDYENLMLVDGTVNKGSNLISSV PVRSLSSVLVDQGCSRILKKEELFSNLYEHVKRNVLQLDKKFYLQGMGIPQGSVLSSL LCSLYYGYMEKHEIFPYLEKTFEPAAEDLSTRHVFSDASDAQNSSEDAVIFPPTYLLL RFIDDFLFISTSKEQASGFLSMLRRGFPDYNCYMNEEKFCLNFDIEHQAGLLSNRIYV VDDGSSFLRWSGLLINCCSLEIQGDYTRYLDNHLSSTLTIRWQGKPGNYLKKKLCGFM RPRCHPLFFDLNINSASVVRLNIYQAFLLSAMKFHRYVSEISEIFKPFGRYCLKIIER SFRYMQRLIGKRMGSIRLGSGLSPVLKLMKEEVVWLGLNAYIEVLKRKQSRHRVLLSM LRCKYFAHRITGNESSELRYAVERSHSSSLWKIKY" gene complement(18657391..18659273) /locus_tag="TCM_044679" /note="dbxref CacaoGD:Thecc1EG044679" mRNA complement(join(18657391..18657956,18658055..18658188, 18658943..18659033,18659122..18659273)) /locus_tag="TCM_044679" /product="Alpha chain of nascent polypeptide associated complex" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g27570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015524t1" /inference="similar to AA sequence:frave:gene00265" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06516t00001" CDS complement(join(18657624..18657956,18658055..18658188, 18658943..18659033,18659122..18659190)) /locus_tag="TCM_044679" /note="dbxref frave:gene00265; paralog of Thecc1EG015524t1" /codon_start=1 /product="Alpha chain of nascent polypeptide associated complex" /protein_id="EOY19547.1" /db_xref="TAIR:AT3G12390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2PYH3" /translation="MTAQTDKEIEEILATHLDQQKIDSDQPEQPVVEDDDEDEDDDDD DDKDEDDAEGHQEGDGSGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFV ISKPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQFKAPDLSHVISKPESSAMAQD DEEVDETGVEPKDIELVMTQAGVSRSKAVKALKAADGDIVSAIMELTT" mobile_element 18660166..18661001 /note="source:INTACT46_F120_scaffold_6-int 6518 7378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18661798..18661845) /note="source:scaffold_8_CACTA_0856 929 976" /mobile_element_type="transposon:TIR/CACTA" gene complement(18662850..18666811) /locus_tag="TCM_044680" /note="dbxref CacaoGD:Thecc1EG044680" mRNA complement(join(18662850..18663393,18663512..18663662, 18663832..18663863,18664141..18664271,18665116..18665409, 18665496..18665677,18665738..18665899,18665955..18665998, 18666081..18666150,18666627..18666811)) /locus_tag="TCM_044680" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s11310.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(join(18663069..18663393,18663512..18663662, 18663832..18663863,18664141..18664271,18665116..18665409, 18665496..18665677,18665738..18665899,18665955..18665998, 18666081..18666142)) /locus_tag="TCM_044680" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19548.1" /translation="MANILYDLMVHHNREVMATGTVGYLHYFTALYIKGGANEIHLYL NLILAIPLYTMDFRKCFASVNVRLDAAGGVSASDVNVNVGVVIGRGNGRGRGPSSPID VDVSHKSSATSRDTDTGDLSSEDLDWMFETKNVQERSQSQGNFKDDIQKGRVINKSFK EIHYAPDENGKVVLVENMLFNSVYHFMEMMADYMVQEGIKLYRAKNEKTRFKAFCQGN GYEWMIHAALCLDRKIFKTKKVGNEHTCFKVENDAYKWLMEKPLTRWARHTLDPSVMT GHVTNNMAKSFNNWIRIPCKHPVACINQRRIEEGNLGKGHLDLVVLRERALSGAFSTK SLVIIKGHVLGFLWDIIERSSSKTLKSASRIASGSTSRITRAPSTSVQGRPINTTTTL GHGGVAGEHGGGGAAVATKEHGGAAQTAKSTSFTKRPSSVVAFARHATPTSSIMNFVN ALFESGTEGT" mobile_element complement(18666989..18667068) /note="source:scaffold_8_CACTA_0858 14201 14279" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18667237..18675984) /note="source:CACAO_M_E71405_F316_scaffold_10 1 11629" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(18676200..18679127) /locus_tag="TCM_044682" /note="dbxref CacaoGD:Thecc1EG044682" mRNA complement(join(18676200..18677526,18678806..18679127)) /locus_tag="TCM_044682" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:POPTR_0001s07150.1" /note="quality class is strong, express is strong, homology is paralog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; weak similarity to Global transcription factor group B1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10044t1" CDS complement(join(18676346..18677526,18678806..18679109)) /locus_tag="TCM_044682" /note="weak similarity to Global transcription factor group B1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19549.1" /db_xref="Phytozome:POPTR_0001s07150.1" /db_xref="TAIR:AT1G65440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLV1" /translation="MRVVYCFGISYEHPGTFILSYIKSRNLHHEYVGLLPNGFKFRKQ TFEKIEHLVGLFQKNIDRLQHTSLTLGNLAFGNSSGACTIGGLQGQLNCSKDRSISRG RSFYHGDGNDDGGKMHPSELPRPHNGSGHDSSNDGFNSFGNEDKDPSQGAAAKWGSCS EDQDRRNEKWGRTNNKLGNDIHFAPNNEDWPGGWSDGVGASGRNWDSGDRRGSGGNWD RNDGTRNSGWSKGIGVDRTGGKWGQRGGRGSRGGCTSGWGSTKNGDSSGSDEVWRASG NNVHVRGRAHTSGWGATKESESGGNFGYNEGDWPVSGNNVGGHRHHGGGRGRGCGCGF RCGHGGSSCWGGTKEGESSASFGGDEGAWHTTGNNVWGRGRHGAGCGGGRMSGWGGSK EGESGGTFDGNGEDWHASGNNVGGHGHCGGGRDHGPGRGRGRGRGRGRGRAGSWDCDR GGHRGGARNACSFGRGRGRSNERGDNCHRESESGHNSSMVNGGW" gene complement(18677499..18680539) /locus_tag="TCM_044683" /note="dbxref CacaoGD:Thecc1EG044683" mRNA complement(join(18677499..18677526,18678806..18678871, 18679021..18679235,18679780..18679989,18680089..18680533)) /locus_tag="TCM_044683" /product="Global transcription factor group, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07150.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044643t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025815001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1473t1" CDS complement(join(18678829..18678871,18679021..18679235, 18679780..18679989,18680089..18680529)) /locus_tag="TCM_044683" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044643t2" /codon_start=1 /product="Global transcription factor group, putative isoform 1" /protein_id="EOY19550.1" /db_xref="Phytozome:GSVIVT01025815001" /db_xref="TAIR:AT1G65440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLV1" /translation="MICGKNGTALAEGSLVLAIVRHVESQRAFCVLDSGLTGIIMKDD FSDEDGDFALEDKLHEGDKVSCKVKQIDKSTFQAFLTCKESEVKRSRYEDILEVDPYY HESGNILLNQQEKACMDEKLDKKHFKPRTISHPFFRNMTLDQAMEFLSDKDAGESIFR PSSRGPSYLTLTLKVFDELYLSKDIVESGKDHKDMTSLLHLGKVLKIGNDKFRDLDEV RDRYVIPLVKHLKEMLGFQKFKRGAKSEVDEVLRAEKLEYPMRVVYCFGISYEHPGTF ILSYIKSRNLHHESMYNWWFARPVEL" mRNA complement(join(18678961..18678984,18679780..18679989, 18680089..18680539)) /locus_tag="TCM_044683" /product="Global transcription factor group, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07150.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044643t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025815001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1332t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1473t1" CDS complement(join(18678970..18678984,18679780..18679989, 18680089..18680529)) /locus_tag="TCM_044683" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG044643t2" /codon_start=1 /product="Global transcription factor group, putative isoform 2" /protein_id="EOY19551.1" /db_xref="Phytozome:GSVIVT01025815001" /db_xref="TAIR:AT1G65440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLV1" /translation="MICGKNGTALAEGSLVLAIVRHVESQRAFCVLDSGLTGIIMKDD FSDEDGDFALEDKLHEGDKVSCKVKQIDKSTFQAFLTCKESEVKRSRYEDILEVDPYY HESGNILLNQQEKACMDEKLDKKHFKPRTISHPFFRNMTLDQAMEFLSDKDAGESIFR PSSRGPSYLTLTLKVFDELYLSKDIVESGKDHKDMTSLLHLGKVLKIGNDKFRDLDEE TNI" gene complement(18686900..18688308) /locus_tag="TCM_044686" /note="dbxref CacaoGD:Thecc1EG044686" mRNA complement(join(18686900..18687045,18687185..18687302, 18687481..18687562,18687821..18687911,18688007..18688308)) /locus_tag="TCM_044686" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc945t1" CDS complement(join(18687186..18687302,18687481..18687562, 18687821..18687885)) /locus_tag="TCM_044686" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19552.1" /translation="MMMMMLSWFKKTESYAFVIFLMKLKRLSGSKTLEKVLRWLSNLV FLMMRAFYLMISLEKRKLHMIMKRMRWQILLWMMEYHMEIDHL" mobile_element complement(18688815..18689023) /note="source:INTACT1373F_F385_scaffold_8-int 16742 16950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18688965..18689069 /note="source:CACAO_M_E49559_F88_scaffold_7 7587 7702" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(18689791..18692314) /locus_tag="TCM_044687" /note="dbxref CacaoGD:Thecc1EG044687" mRNA complement(join(18689791..18690643,18691238..18691814, 18691986..18692314)) /locus_tag="TCM_044687" /product="O-methyltransferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034498001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015522t1" /inference="similar to AA sequence:ricco:30131.m007226" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(18689965..18690643,18691238..18691814, 18691986..18692061)) /locus_tag="TCM_044687" /note="dbxref ricco:30131.m007226; paralog of Thecc1EG015522t1" /codon_start=1 /product="O-methyltransferase, putative" /protein_id="EOY19553.1" /db_xref="TAIR:AT5G54160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGD7" /translation="MALTPSLFTLPLPLSFFLSWFLFLFVVGLFHFYKCYGDNKEQLH DYFIYFFVSNCKPLLIPLFNVIKGKPKPKKQTELSPWGARVSEEMSTSMSEEEEAFGY AWCLRSSDMFCFVLDAAIQLGLFDIIAKAGPGAHLSSSEIASQLNANNPEAPSLLDRV LRLLACYDLVTCITRNLDGDGKVERLYGLALPGKAFVPDESRGCLAGFAITKAKIEAY LYLKDMILDGGNVFERLHGAGVPVYQYMSLHPDMARKFDTTMTNLSKVVMNKVLDKYH GFQGIPCLVDVGGGYGISLNIIISKYPSIHGINYDMPHVIQDAPSFPGIQHIGGDMFS SVPKADAIMIKDVLHNWNDERCLKLLKNCYEALPERGKVIVVSYVMIDEPEASDGAKF VCQMDLLMALQGGAKQRTENQFKDLSKAAGFSDFQLNCRIFNAIGVMEFFK" gene complement(18693705..18696983) /locus_tag="TCM_044689" /note="dbxref CacaoGD:Thecc1EG044689" mRNA complement(join(18693705..18694008,18694241..18694396, 18695001..18695082,18695317..18696780,18696889..18696983)) /locus_tag="TCM_044689" /product="Binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033992001" /inference="similar to AA sequence:frave:gene18827" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7667t3" CDS complement(18695355..18696767) /locus_tag="TCM_044689" /note="dbxref frave:gene18827" /codon_start=1 /product="Binding protein, putative" /protein_id="EOY19554.1" /db_xref="TAIR:AT3G09030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZD2" /translation="MADQNSNPTIPFDRIKLNVGGKLLETTVSTLQSGGPDSLLAALS NRPLHHDSNPIFIDRDPEIFSVLLSLLRSNSLPSAALRRFSLQELTDEALYYGVESRL RSASLPSPLRGIDAALVDTIRPAAEAVPSTFSAAEDGSLWIAHGGQISLYDSYLSYST AVRTHLDDITLICRVWPDIAAVGSESSSGLHFYDLSSGRYAGSVHWTDQADPRIYKAR VSAIANSPDSLFASFDCPHRENGVLVIDKSTLQVSSELARQSGTAAKNTVAGKLTWLP ATGLVIGSAVTSGAFGYSGYIRVWDPRSRQVVWETNEPGSGRSSRFGDAFADVDVDAD DLTLFKICSKSGDLAMADIRSLGEDPWVYMKDTNPSLRDTSCGRNNVILHCYRGQVFV GKDGGLEVWSREKPCQQVCESQTQSLRRNYVDKVEDAERGMIKRIEGGGQRLFVSRED VEGIEVWESSNYSGAVSVSS" gene complement(18697213..18708754) /locus_tag="TCM_044690" /note="dbxref CacaoGD:Thecc1EG044690" mRNA complement(join(18697213..18698397,18698500..18698855, 18708691..18708754)) /locus_tag="TCM_044690" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29686.m000883" /inference="similar to AA sequence:ricco:29686.m000883" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07092t00001" CDS complement(join(18697837..18698397,18698500..18698853)) /locus_tag="TCM_044690" /note="dbxref ricco:29686.m000883" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19555.1" /db_xref="TAIR:AT4G02550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JHK5" /translation="MDHYDLQAQRREMKHKGRNVVWSIAMDKCLIEALAIQAKNGNKI DKCFNENAYTAACIAVNSRFNLNLNNQKVVNRLKTIKKRYKVMRDMLSQDGFRWNPNS KMIECDSEDLWKRYIAAHSDARGFRGKQIEMYDELKIVCGNYQAPSRWAKMKDGSHPT GYKNFEEDSASFLSPSSDDLSDTDGTESYTGQPEYLQDGSQDPPVMEPLRQLPKRPRG SDSLQEAMLAVASSIRRLADAMERSKTPINPSELLEAVMEVDGLEEAKQMYAFEYLNA DPIKARAFMTYNVRMRKTYLFRQFWWWK" gene complement(18713279..18715093) /locus_tag="TCM_044692" /note="dbxref CacaoGD:Thecc1EG044692" mRNA complement(18713279..18715093) /locus_tag="TCM_044692" /product="Ubiquitin-conjugating enzyme/RWD-like protein" /inference="alignment:exonerate- protein:2:ricco:29686.m000879" /inference="similar to AA sequence:ricco:29686.m000879" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5342t1" CDS complement(18713669..18714898) /locus_tag="TCM_044692" /note="dbxref ricco:29686.m000879" /codon_start=1 /product="Ubiquitin-conjugating enzyme/RWD-like protein" /protein_id="EOY19556.1" /db_xref="TAIR:AT3G12400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LHG8" /translation="MVPPPSTPPPNPQQIQQFLSSVLSQRGPSSLPYTEDTKWLIRQH LLSVTSHYPSLEPKTATFTHNDGRSVNLLQADGTIPMPFQGITYNIPIIIWLMESYPR HPPVVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVLNLSSAFARDP PLYSQRRPNPSPDPSPNPSINSSMTSSYGQHPPPPRVAAAAAGYPPSPYGRVQLPQSP APQTEDASEVYKRNAVNKLVEMVHGDIIGMRKAREVEVEGLFSAQAVLRRREEEINKG LKEMQDEKEGLEQQLQVVLMNTDVLDSWVRDNEGKRKNLGMTNVNVDEAFHCADVLSK QMLDCTSADLAIEDVVYSLDKAVQDGAVPFDQYLRNVRLLSREQFFHRATAAKVRAVQ MQAQVASMAARAPHYAT" mobile_element complement(18715248..18717706) /note="source:CACAO_on_SS_E42_scaffold_2 275 2693" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18715622..18720366 /note="source:CACAO_M_S_E145422_F88_scaffold_10 411 5187" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18718153..18720616 /note="source:INTACT502_F76_scaffold_5-int 2845 5312" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18721337..18725594) /locus_tag="TCM_044693" /note="dbxref CacaoGD:Thecc1EG044693" mRNA complement(join(18721337..18721581,18721701..18721829, 18721935..18724813,18725160..18725594)) /locus_tag="TCM_044693" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19010.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19010.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5346t1" CDS complement(join(18722399..18724813,18725160..18725405)) /locus_tag="TCM_044693" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY19557.1" /db_xref="Phytozome:POPTR_0003s19010.1" /db_xref="TAIR:AT1G11290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I6N4" /translation="MVPPPSTPPPNPQQFLSSVLSHLGPSSLPYTKDTKWLIRQYLLS VTSHYPSLEPKTATFTHNDGRSVNLLQADGTIPMPFQGLLTSPPPFTIPTPKPHSHTL SQRTQIPLHVYKHPTAILLELSTSIKEVYQILPHIIKSNLYSQHLFQTKLLSLFCNHG CIPEAACVFEPIEDKLDVLYYTLLKGYAKHSSLNQALSFFVRMKVDNVKPVVYNFTYL LKVCGDNGELRRGKEIHGQLIKNGFSSNVFAMTGVVNLYSKCRQIDEAYKMFDRTPER DLVSWNTIISGFAQNGLAKLALGLVVRMQEEGQRPDSITLVSVLPAVADMGLVKIGKA VHGYVIRAGLEGLVNVNTALLDMYSKCGFVGIGRLVFDGMKQRTAVSWNSMIDGYVQS GNAEEAMVVFQKMLDERVEPTDVTIMGAAHACADLGDLDRGMFVHKVSDQLKLGSNVS VMNSLISMYSKCKRVDIAADIFKKLHGKTLVSWNAMILGFAQNGRSNDALNYFYEMHS RNIRPDTFTMVGVIPALADLSVTRQAKWIHGFCIRSCLDADVFAMTALVDMYAKCGAI HTARKLFDMMNEQHVTTWNAMIDGYGTHGLGKAALELFNEMQKGSIKPNDVTFLCVLS ACSHSGMVDEGLCYFNSMKKDYGIEPAMDHYGAMVDLLGRAGRLDEAWNFIQKMTIEP GINVYGAMLGACKIHKNVELGEKAANKLFALNPDEGGYHVLLANIYAMASMWGKVAKV RTLMKKKGLQKTPGCSVVELRNEVHSFYSGTTNHPQSKKIYAFLEELGDKIKAAGYVP DTSSIHDVEDDVKEQLNSTHSERLAIAFGLLNTSQGTPIHIRKNLRVCGDCHNATKYI SLVTGREIIVRDMHRFHHFKNGTCSCGDYW" mobile_element 18727973..18728411 /note="source:CACAO_on_S_E58_scaffold_2 4 459" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18728411..18729552) /note="source:scaffold_6_CACTA_0709 4992 6134" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18733296..18733679 /note="source:CACAO_Mutator_E1888_scaffold_9 10514 10898" /mobile_element_type="transposon:TIR/Mutator" gene complement(18739178..18741696) /locus_tag="TCM_044695" /note="dbxref CacaoGD:Thecc1EG044695" mRNA complement(join(18739178..18739547,18739627..18739717, 18740115..18740206,18740300..18740403,18740482..18740655, 18741627..18741696)) /locus_tag="TCM_044695" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS complement(join(18739468..18739547,18739627..18739717, 18740115..18740206,18740300..18740403,18740482..18740603)) /locus_tag="TCM_044695" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19558.1" /translation="MLKSFSDYDMYHQKLFSRQEFDPLTSPQVSLFINSAIFPSSPGV AISDPHLLPNVFSERTECTTGSRVYLLRVRVDGNFIQFENAEKPKQTKVSVLARRSHG AFLLLQDGIPHTLSLNVTLATFCFGSETQPKYLKSNDAADNLAKEGVARPNNPLWVLG DD" mobile_element complement(18741388..18741430) /note="source:scaffold_5_CACTA_0584 1922 1965" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18741391..18741457) /note="source:CACAO_Mutator_E39_scaffold_1 10719 10790" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18745024..18747497 /note="source:CACAO_on_SS_E42_scaffold_2 19410 21906" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18747542..18747666 /note="source:CACAO_on_SS_E42_scaffold_2 21896 22006" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18747667..18748090) /note="source:INTACT897F_F376_scaffold_6-int 6497 6923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18748088..18748622 /note="source:CACAO_on_E175_scaffold_1 438 970" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18748620..18749413) /note="source:INTACT897F_F376_scaffold_6-int 5711 6505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18749440..18751867 /note="source:CACAO_on_SS_E42_scaffold_2 19410 21875" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18751943..18752067 /note="source:CACAO_on_SS_E42_scaffold_2 21896 22006" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18752068..18753288) /note="source:INTACT897F_F376_scaffold_6-int 5705 6923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18753308..18755816 /note="source:CACAO_on_SS_E42_scaffold_2 19410 21928" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18755840..18756071 /note="source:CACAO_on_SS_E42_scaffold_2 21896 22116" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18756348..18756814 /note="source:CACAO_M_S_E16721_F36_scaffold_2 17779 18234" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18756819..18757423) /note="source:INTACT345_F202_scaffold_1-int 12389 12739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18757598..18758051 /note="source:CACAO_M_S_E52027_F3_scaffold_5 6236 6693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18757973..18759627) /note="source:INTACT19_F111_scaffold_6-int 12443 14072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18758158..18768133 /note="source:CACAO_M_S_E16721_F36_scaffold_2 5987 16005" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18768125..18770843) /note="source:INTACT51_F23_scaffold_9-int 3135 5818" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(18768498..18775330) /locus_tag="TCM_044698" /note="dbxref CacaoGD:Thecc1EG044698" mRNA complement(join(18768498..18768596,18768707..18768908, 18769137..18769741,18769967..18770792,18775241..18775330)) /locus_tag="TCM_044698" /product="T6D22.19, putative" /inference="alignment:exonerate- protein:2:frave:gene11537.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036599t1" /inference="similar to AA sequence:Phytozome:Glyma04g34950.1" /note="quality class is medium-expresste, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS complement(join(18768541..18768596,18768707..18768908, 18769137..18769741,18769967..18770783)) /locus_tag="TCM_044698" /note="paralog of Thecc1EG036599t1" /codon_start=1 /product="T6D22.19, putative" /protein_id="EOY19559.1" /db_xref="Phytozome:Glyma04g34950.1" /db_xref="TAIR:AT3G42170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMZ8" /translation="MDQSVENCINVDDDVNILNEDEIPSQSHISESEQLNKRVKKETS NVWNYFTKIGKKQDGVERATCNGCKTEYKVGPKPGGSNYGTSHLRRHIDTCKFISYFN PHQMLIDYEGKVKARKFDPRISRDMLAEAIIKHDLPYAFVEYDKIRAWAKYVNPDVVM PSRNTTVSDVQRIHLREKEKLKQAMAKVPNRICLTSDVWTASTSEGYICLTAHFVNKN WKLCSKLLNFCRMPPPHTGVELAATIFDCLKEWGIDRKVFSLTLDNASANDNMQGVGL RLDASTRWNSTYLMFESAIKYQKAFASLQFVDRTYKYNPSDKEWGRAMIICEFLEPFY ETINLISGSSYPTSNLYFMQVWKIESILNENLHNEDEVIKDMSQRMKMKFDKYWKDYS VVLAFGAILDPRMKLDFLRFCYSKIDASTCHEKLENVKTKLYELFEQYASNTSASSTS SHSTSNLPKQAGRGTKPKGLKIFSDNAKRFPDLSVMARDVLNISITTVASESAFSISG HVLTKFRSSLHHENVQMLVCTKNWLHGFSLAADDDDSELETSLLSKQDSNV" gene complement(18771380..18775843) /locus_tag="TCM_044699" /note="dbxref CacaoGD:Thecc1EG044699" mRNA complement(join(18771380..18772244,18775254..18775843)) /locus_tag="TCM_044699" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(18771989..18772244,18775254..18775297)) /locus_tag="TCM_044699" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19560.1" /translation="MMGLFEKACEGEFLRCSALCCGPNGLLSLSRLRLEPIDNRQSPN PQIPNSPEPSRSLILLPNYKAFQLLDFISQFSLPIRHPAIGIWPSASTHHPWYKA" mobile_element complement(18772596..18772781) /note="source:INTACT51_F23_scaffold_9-int 1265 1448" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18772770..18775340 /note="source:CACAO_M_S_E16721_F36_scaffold_2 15996 18563" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18775570..18776405) /note="source:scaffold_2_CACTA_0252 1237 2071" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18776524..18776863) /note="source:INTACT345_F202_scaffold_1-int 848 1188" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18777023..18777150) /note="source:INTACT345_F202_scaffold_1-int 213 334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18777037..18777510 /note="source:CACAO_M_S_E52027_F3_scaffold_5 6226 6696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18777758..18777871 /note="source:CACAO_on_SS_E42_scaffold_2 23348 23464" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18777789..18777877 /note="source:CACAO_Again_on_S_E228_scaffold_7 1 89" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18777868..18778037) /note="source:scaffold_3_CACTA_0398 3993 4162" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18778124..18778550 /note="source:CACAO_Again_on_S_E228_scaffold_7 2678 3101" /mobile_element_type="transposon:TIR/hAT" gene 18778628..18780166 /locus_tag="TCM_044700" /note="dbxref CacaoGD:Thecc1EG044700" mRNA 18778628..18780166 /locus_tag="TCM_044700" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400045104" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026877t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS 18778664..18779158 /locus_tag="TCM_044700" /note="paralog of Thecc1EG026877t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19561.1" /translation="MAADGPSNPPNHSFSVPPSLPMVAAPTPSPLEEGKLQPPPSHGF PQPIQTQIQPPTSPRFQKKSFLSIISKRKPPVVPPTRDPFVYKDRPAAAFFEDEIQTL AQPFKTSLVGKFSRMPKLLEVRSAFKGIGLAGAYEVRWLDYKHVLIHLSNEQDFNRIW TKQN" mobile_element complement(18781221..18786600) /note="source:CACAO_LINE_E_29_scaffold_10 1 5380" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 18786593..18786941 /note="source:CACAO_on_SS_E42_scaffold_2 24174 24537" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18790263..18790361) /note="source:CACAO_Helitron_S_E29_scaffold_3 1167 1256" /mobile_element_type="transposon:Helitron" mobile_element 18792325..18792650 /note="source:CACAO_on_E69_scaffold_9 4 344" /mobile_element_type="transposon:TIR/hAT" mobile_element 18792843..18793459 /note="source:CACAO_on_E48_scaffold_6 2746 3264" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18793545..18793726) /note="source:INTACT1232F_F375_scaffold_6-int 354 535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18793572..18793733) /note="source:scaffold_2_CACTA_0248 10164 10327" /mobile_element_type="transposon:TIR/CACTA" gene complement(18794220..18794851) /locus_tag="TCM_044703" /note="dbxref CacaoGD:Thecc1EG044703" mRNA complement(18794220..18794851) /locus_tag="TCM_044703" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(18794300..18794515) /locus_tag="TCM_044703" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19562.1" /translation="MGHRLGERKGMREKKKREEKNGATPAGRKERKRKRKRKKERKKK STGKEKGKGERGKKKRRRRRRKKKEKS" mobile_element complement(18794769..18794803) /note="source:scaffold_2_CACTA_0248 9106 9140" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18794808..18794972 /note="source:INTACT257_F186_scaffold_6-int 2096 2257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18795307..18796401) /note="source:CACAO_M_E70357_F3_scaffold_10 616 1713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18796387..18796483 /note="source:CACAO_M_S_E119191_F3_scaffold_9 1594 1712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18800320..18800406) /note="source:CACAO_Helitron_S_E29_scaffold_3 1167 1243" /mobile_element_type="transposon:Helitron" mobile_element complement(18805149..18805645) /note="source:CACAO_on_E459_scaffold_2 2054 2549" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(18806276..18806739) /note="source:INTACT52F_F339_scaffold_1-int 378 845" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18816186..18821201) /locus_tag="TCM_044705" /note="dbxref CacaoGD:Thecc1EG044705" mRNA complement(join(18816186..18818433,18820455..18820566, 18820708..18821201)) /locus_tag="TCM_044705" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032030t1" /inference="similar to AA sequence:Phytozome:Glyma08g41350.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc5143t1_G3" mobile_element complement(18816355..18817432) /note="source:INTACT1330F_F382_scaffold_8-int 3749 4825" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(18816813..18818433,18820455..18820566, 18820708..18820846)) /locus_tag="TCM_044705" /note="paralog of Thecc1EG032030t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19563.1" /db_xref="Phytozome:Glyma08g41350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HW90" /translation="MPATEGEVVRRLREKSEKKGEDTTAGEERRRRFLERRERAPRLE RESIKTVRFGLHRAGFLKQAGVLNLGSHGSPSWANRSPTRKSICHLTTINRVDPIAYM ESSWPSSSYDGIYQVTQHMASTQQSEGDCLSKDHFSSLPDRVHLDLKQNDFTDLLNIW DKWGATTRANFDRKYGHIARLLKVQVDEQLLKAIVQFWDPSYRCFVFNKVDMVPTIEE YSALLQIDLDNPDKIYWRGQKTGHRRKLAKMMDITSAEVDQNLRKKGDNECIPWSFLR GYIMKQRDTEQGQLVMALAIYGLVIFPKVLGHIEVGIIDFFEQVVNKANPSPSILAET LRSLNYCRRKGEGRFVGCAQLLSIWIVSHFECKVDKFRKPFHPQTAPIREXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXLMSVEVTWRAPWMPHHPVLYKCGNEPWVPLMG PWGAISYAPIMVRRQFGSEQFVPMTHRLNTLEFAYGEPGFLKRIEEIAQAWKKTSQVD QGRYTDEVTTGYQIWHDQRVKDVVYPKEDALRGPVDPEPRDALLESELARKKSEAENA SWKQRYEDLQKECEKMKREVSQQRKKVRKMEGKYESLNDKFSAITSELQREIQVREN" mobile_element 18817533..18819884 /note="source:INTACT60_F127_scaffold_9-int 12356 14690" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18820438..18821269) /note="source:INTACT464_F222_scaffold_9-int 1 818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18821522..18825342) /note="source:INTACT1622F_F10_scaffold_10-int 1 3821" /mobile_element_type="retrotransposon:LTR/Copia" gene 18821716..18853988 /locus_tag="TCM_044707" /note="dbxref CacaoGD:Thecc1EG044707" mRNA join(18821716..18821931,18842901..18843393, 18843563..18844011,18844644..18844811,18853856..18853988) /locus_tag="TCM_044707" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s03975.1" /inference="similar to AA sequence:Phytozome:GSVIVT01017026001" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" mobile_element 18828511..18828610 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3809 3953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18828523..18828616 /note="source:CACAO_M_E14113_F106_scaffold_3 13795 13886" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18829759..18829850) /note="source:CACAO_Helitron_S_E29_scaffold_3 1167 1248" /mobile_element_type="transposon:Helitron" mobile_element complement(18832766..18833128) /note="source:scaffold_4_CACTA_0511 13058 13422" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18838748..18838847 /note="source:scaffold_4_CACTA_0511 5704 5799" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18838757..18838861) /note="source:scaffold_4_CACTA_0511 7084 7185" /mobile_element_type="transposon:TIR/CACTA" CDS join(18842948..18843393,18843563..18844011, 18844644..18844789) /locus_tag="TCM_044707" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19564.1" /db_xref="Phytozome:GSVIVT01017026001" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AGQ8" /translation="MTIEKERHLKNMLMTIKKRSRSLDDYLKDFKSICDTLAAIKQPV LDHDKVFQFGRVLGPTYDNFQITMLTKPPYPSFTQFVQALQSFEQDQIAKKDEEKAFL EHAQAFFGQRGRGQNNRGGHENFNSRGKGFAPASRSNSRCPLFCQIRFDYSYQFEEIP QALATLSTNDQNDPSFYVDFGATSHMTNDSSKLSYIKPYNGNDVIYVGDGNIFPICEV NINTENGQLNLKDVLVVSDLKKNLLSIGKLTQDNLCTVEFTSTDFVVEDQKQSMIAKG RKRGQLYALNDTSQEVLSAIRKVLSNDTQYHKLYKRHLVTTRNSHRARDNRRDVAIDT NYPECRSKPRKA" mobile_element complement(18844690..18847643) /note="source:CACAO_M_S_E122136_F76_scaffold_10 1327 4277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18857376..18857430) /note="source:CACAO_M_S_E85177_F5_scaffold_7 20171 20224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18861731..18861844) /note="source:INTACT1581F_F99_scaffold_9-int 7394 7487" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18861816..18869563 /note="source:INTACT93_F15_scaffold_3-int 3542 11266" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18870576..18876589 /locus_tag="TCM_044709" /note="dbxref CacaoGD:Thecc1EG044709" mRNA join(18870576..18871167,18873603..18873810, 18873923..18874006,18874095..18874199,18874808..18874948, 18875393..18875635,18875763..18875894,18876425..18876589) /locus_tag="TCM_044709" /product="Syntaxin of plants 81 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20150.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09670t00001" CDS join(18873733..18873810,18873923..18874006, 18874095..18874199,18874808..18874948,18875393..18875635, 18875763..18875894,18876425..18876568) /locus_tag="TCM_044709" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Syntaxin of plants 81 isoform 1" /protein_id="EOY19565.1" /db_xref="Phytozome:POPTR_0010s20150.1" /db_xref="TAIR:AT1G51740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT21" /translation="MSRFRDRTEDFKDAVRHTAISSGYSESKLAAIMASFIIHKPWQT TPFTKSALKTLESIGALDQFMSKHRKDYVDLHRTTEQEKDSIEQEVTAFIKACKDQID VLKNSINDEEATSKGWLGIRDTSNADTIAHKHGVVLILSEKLHSVTAQFDQLRAIRFQ DAINRATPRRKLKRVVDSNSLDTSKPVNLDLRETNELQPESLRVQQELLDNETRALQV ELTSLLDAVQETETKMVEMSALNHLMSTHVLQQAQQIEHLYDQAVEATKNVELGNKEL SQAIQRNSGSRTFLLLFLFVLTFSILFLDWYN" mRNA join(18873927..18874199,18874808..18874948, 18875393..18875635,18875763..18875894,18876425..18876587) /locus_tag="TCM_044709" /product="Syntaxin of plants 81 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20150.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s20150.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06311t00001; inference alignment:Newbler:10:TSA:cgbaP2_g09670t00001" CDS join(18874125..18874199,18874808..18874948, 18875393..18875635,18875763..18875894,18876425..18876568) /locus_tag="TCM_044709" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Syntaxin of plants 81 isoform 2" /protein_id="EOY19566.1" /db_xref="Phytozome:POPTR_0010s20150.1" /db_xref="TAIR:AT1G51740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HT21" /translation="MSKHRKDYVDLHRTTEQEKDSIEQEVTAFIKACKDQIDVLKNSI NDEEATSKGWLGIRDTSNADTIAHKHGVVLILSEKLHSVTAQFDQLRAIRFQDAINRA TPRRKLKRVVDSNSLDTSKPVNLDLRETNELQPESLRVQQELLDNETRALQVELTSLL DAVQETETKMVEMSALNHLMSTHVLQQAQQIEHLYDQAVEATKNVELGNKELSQAIQR NSGSRTFLLLFLFVLTFSILFLDWYN" gene complement(18876728..18882610) /locus_tag="TCM_044710" /note="dbxref CacaoGD:Thecc1EG044710" mRNA complement(join(18876728..18876933,18877156..18877305, 18878110..18878260,18878555..18878654,18879920..18879958, 18880628..18880693,18880916..18880999,18881501..18881545, 18881637..18881672,18882009..18882063,18882230..18882610)) /locus_tag="TCM_044710" /product="KHG/KDPG aldolase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012452001" /inference="similar to AA sequence:Phytozome:POPTR_0001s07070.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc198t10_C2" CDS complement(join(18877266..18877305,18878110..18878260, 18878555..18878654,18879920..18879958,18880628..18880693, 18880916..18880999,18881501..18881545,18881637..18881672, 18882009..18882063,18882230..18882435)) /locus_tag="TCM_044710" /codon_start=1 /product="KHG/KDPG aldolase" /protein_id="EOY19567.1" /db_xref="Phytozome:POPTR_0001s07070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLV9" /translation="MVFTCTLTCLSGTQSQRLFTWNSVQQHYSALPLPPYPFKPCCSS SSRNHNHTFSLIQDCAVIACLRANSAEQAMEAARAAVNGGIEVLEIVRSTPGVFEVLQ ALVKEYPTKAFGVGTVLNAEDAKTAMNAGAKFLMSPATVKDIMDDVQDADVLYMPGVM TPTEIFSAYNSGAKIVKIYPVSALGGTRYISAIMKPFPHIPMVASQGITIDSVGDYIA QGAISVVLSDAIFDKEAMGRNNFNAIHQLAKSAALQGKIAVEWKRNCRLTFFPHS" gene 18884456..18888519 /locus_tag="TCM_044711" /note="dbxref CacaoGD:Thecc1EG044711" mRNA join(18884456..18884466,18885250..18885732, 18886140..18886429,18886569..18886782,18887111..18887364, 18887676..18888519) /locus_tag="TCM_044711" /product="Pectin lyase-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29738.m001005" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044713t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s18510.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS join(18885310..18885732,18886140..18886429, 18886569..18886782,18887111..18887364,18887676..18887805) /locus_tag="TCM_044711" /note="paralog of Thecc1EG044713t1" /codon_start=1 /product="Pectin lyase-like superfamily protein" /protein_id="EOY19568.1" /db_xref="Phytozome:POPTR_0010s18510.1" /db_xref="TAIR:AT1G65570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04474" /translation="MAKQTRPRLSSRHGMQAAATKFNVLAFGAKPNGKTDSTKGFFKA WNAACGSADSTMMYVPKWRYLLGSMAFKGDCKSPQITIRIDGTLVAPGDYSVLGKSAN WLSFEGVSGVSIIGGALDAKGPALWACKASRTNCPSGATTLSFTNSNNIKINGLMSLN SQMFHIVINGCQNVHIQGVRIIAADNSPNTDGIHVQLSTNVEIINCSIKTGDDCTSIG PGTKNLWIEQVTCGPGHGISQGFERGRGPKCYSKKDNILCTQNGLRIKSWARPSNGFV QGVRFMDSVMRNVQNPTVVDQNYCPHNPNCPDQVLGIKIRDIVYEGIRGTSSTLIAIK FDCSAKQPCIGIRLQNVNLAYLNKTAQSSCSNVVGKAFDLVRPNSCFVIMEMKWLPFS FWKSNIAGKEKEAMEGQSDVNYPLRLSFRKTTIGARPSSLEVSY" mobile_element 18888288..18888681 /note="source:INTACT189_F49_scaffold_5-int 17859 18253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18889624..18892611 /note="source:CACAO_M_E12963_F15_scaffold_3 1 2946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18892612..18892982 /note="source:INTACT189_F49_scaffold_5-int 1469 1839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18892647..18893019) /note="source:INTACT39F_F22_scaffold_1-int 18288 18625" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18900896..18909417 /locus_tag="TCM_044713" /note="dbxref CacaoGD:Thecc1EG044713" mRNA join(18900896..18901164,18906488..18907039, 18907392..18907865,18908060..18908349,18908495..18908723, 18909032..18909417) /locus_tag="TCM_044713" /product="Pectin lyase-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29738.m001005.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044711t1" /inference="similar to AA sequence:ricco:29738.m001005" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS join(18907407..18907865,18908060..18908349, 18908495..18908723,18909032..18909250) /locus_tag="TCM_044713" /note="dbxref ricco:29738.m001005; paralog of Thecc1EG044711t1" /codon_start=1 /product="Pectin lyase-like superfamily protein" /protein_id="EOY19569.1" /db_xref="TAIR:AT1G65570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04474" /translation="MSNMMKLSSPFQGMILILFVMLGINSASAATTKSNVLAFGAKPN GKTDSTKAFLEAWNAACGSADSTMIYVPKGRYLLGSMAFKGDCKSPQITIRIDGTLVA PGDYSVLGKSASWLSFEGVSDVSIIGGALDAKGPALWACKTSHTNCPSGATTLSFTNS NNVRINGLTSFNSQMFHIVINGCQNVHIQGVKIIAAGNSPNTDGIHVQLSTNVEIINC SIKTGDDCISIGPGTKSLWVERVTCGPGHGISIGSLAKDLKEEGVQNITVRKTIFSGT QNGLRIKSWARPSNGFVQGVRFINSVMRNVQNPIVIDQNYCPHNLNCPGQVSGIKIRD IVYKNIRGTSSTPIAIKFDCSAKQPCTGIRLQNVNLTYLEKAAQSSCSNVVGKAFDLV RPNSCL" gene complement(18909766..18910800) /locus_tag="TCM_044714" /note="dbxref CacaoGD:Thecc1EG044714" mRNA complement(18909766..18910800) /locus_tag="TCM_044714" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage" CDS complement(18909981..18910676) /locus_tag="TCM_044714" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19570.1" /translation="MQTQPLLESSAMASVGGNKKKMKSDIICHHCGKIGHVKDNCYRL IRFSPDFKFTKGKGVLKNVISSVNNVSASGSSAEQEDIDSVMPHISLTKQQFQKLLTL INEGATDFGDKPSASTVPTAIKGINVQSVKPSIVNSSVAGIITRPYCFNSLHGIYGES SYTNIFKIDPYCWIVDSGATDHIACSLNLFITSIPVKNAFVQMPNNLRAVVTHWFSEN ITKSYPSSCLVCT" mobile_element 18916079..18918043 /note="source:scaffold_9_CACTA_0932 716 2660" /mobile_element_type="transposon:TIR/CACTA" gene complement(18923449..18928420) /locus_tag="TCM_044716" /note="dbxref CacaoGD:Thecc1EG044716" mRNA complement(join(18923449..18924203,18924613..18924634, 18924723..18925486,18926176..18927085,18928072..18928420)) /locus_tag="TCM_044716" /product="DEAD-box ATP-dependent RNA helicase 35 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017454001" /inference="similar to AA sequence:Phytozome:GSVIVT01017454001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b043142t1a3; alternateUTRof:Thecc1EG044716t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc190t1_C1" mRNA complement(join(18923449..18924203,18924613..18924634, 18924723..18925486,18926176..18927085,18927452..18927597, 18928072..18928420)) /locus_tag="TCM_044716" /product="DEAD-box ATP-dependent RNA helicase 35 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017454001" /inference="similar to AA sequence:Phytozome:GSVIVT01017454001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc190t1_C1" CDS complement(join(18923927..18924203,18924613..18924634, 18924723..18925486,18926176..18927074)) /locus_tag="TCM_044716" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DEAD-box ATP-dependent RNA helicase 35 isoform 1" /protein_id="EOY19571.1" /db_xref="Phytozome:GSVIVT01017454001" /db_xref="TAIR:AT5G51280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU46" /translation="MEEDDDYVEYIPVAKRRAMEAQKILQRKGKSSALEDENEKSNLA EVKPSLLVKATQLKKDQPEISQMEQIVQQEKEMIEHLSDRKTLMSVRELAKGITYTEP LLTGWKPPLHIRRMSKKERDLIWKQWHIIVDGEDIPPPIKNFKDMKFPDPILKKLKAK GIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIMIALQEEMMMPILPGEG PFGLIVCPSRELARQTYEVVEQFLVPMRENGYPELRPLLCIGGVDMRSQLDVVKKGVH IVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLL FSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT PPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVAT DVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD LKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHQEKFDMYLELLA YLDQQFLQRTYLVYLGLPLKKLLRHFMLHAKAATLIWQTRTSIMELQKGFRFLRCFLS YLMWLLRQMIYQMNKKLKFARVWLRQISV" CDS complement(join(18923927..18924203,18924613..18924634, 18924723..18925486,18926176..18927074)) /locus_tag="TCM_044716" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DEAD-box ATP-dependent RNA helicase 35 isoform 1" /protein_id="EOY19572.1" /db_xref="Phytozome:GSVIVT01017454001" /db_xref="TAIR:AT5G51280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU46" /translation="MEEDDDYVEYIPVAKRRAMEAQKILQRKGKSSALEDENEKSNLA EVKPSLLVKATQLKKDQPEISQMEQIVQQEKEMIEHLSDRKTLMSVRELAKGITYTEP LLTGWKPPLHIRRMSKKERDLIWKQWHIIVDGEDIPPPIKNFKDMKFPDPILKKLKAK GIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIMIALQEEMMMPILPGEG PFGLIVCPSRELARQTYEVVEQFLVPMRENGYPELRPLLCIGGVDMRSQLDVVKKGVH IVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLL FSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT PPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVAT DVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD LKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHQEKFDMYLELLA YLDQQFLQRTYLVYLGLPLKKLLRHFMLHAKAATLIWQTRTSIMELQKGFRFLRCFLS YLMWLLRQMIYQMNKKLKFARVWLRQISV" gene complement(18924177..18928266) /locus_tag="TCM_044717" /note="dbxref CacaoGD:Thecc1EG044717" mRNA complement(join(18924177..18924203,18928072..>18928255)) /locus_tag="TCM_044717" /product="Uncharacterized protein isoform 1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc193t2; alternateUTRof:Thecc1EG044717t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc18077t2" mRNA complement(join(18927057..18927085,18928072..>18928255)) /locus_tag="TCM_044717" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc193t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc18077t2" CDS complement(18928088..>18928255) /locus_tag="TCM_044717" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY19573.1" /translation="FSSPFSCRLFPLFLKKPSHGCLLHSKNVINTSKSILSVPPTSVS PKRKTYFPFSL" CDS complement(18928088..>18928255) /locus_tag="TCM_044717" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19574.1" /translation="FSSPFSCRLFPLFLKKPSHGCLLHSKNVINTSKSILSVPPTSVS PKRKTYFPFSL" mobile_element 18930657..18931396 /note="source:CACAO_M_E44150_F74_scaffold_5 1512 2251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18931497..18933797 /note="source:CACAO_M_E44150_F74_scaffold_5 2305 4595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18939361..18940103 /note="source:CACAO_M_E56772_F15_scaffold_8 1 743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18942194..18943994 /note="source:INTACT584_F15_scaffold_3-int 9486 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18943854..18944013) /note="source:INTACT407F_F356_scaffold_4-int 5160 5315" /mobile_element_type="retrotransposon:LTR/Copia" gene 18947061..18948699 /locus_tag="TCM_044718" /note="dbxref CacaoGD:Thecc1EG044718" mRNA join(18947061..18947474,18947593..18948699) /locus_tag="TCM_044718" /product="Metacaspase 9" /inference="alignment:exonerate- protein:2:ricco:29822.m003455" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044720t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02510.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5270t1" CDS join(18947120..18947474,18947593..18948176) /locus_tag="TCM_044718" /note="paralog of Thecc1EG044720t1" /codon_start=1 /product="Metacaspase 9" /protein_id="EOY19575.1" /db_xref="Phytozome:POPTR_0016s02510.1" /db_xref="TAIR:AT5G04200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FYE1" /translation="MDKGKKRLAVLVGCNYPNTKHELHGCINDVVAMREVLVERFGFD PSHVKLLTDAPGSLVMPTGANMKAALNEMVNKAEAGDVLFFHYSGHGTRIPSLKPDNH FRQDEAIVPCDFNLITDVDFRQLVNRLPKGATFTILSDSCHSGGLIDKEKEQIGPSTI KNTTSVSYRVKTIPFQSVLQHLSSLTSINTSDIGTHLLEFFGADASLKFRLPQLESDL LESLKTDEGILLSGCQADETSADMNAIEGGGKAYGAFSNAVHMVLKENPGALSNRKVV LMARKVLEAQGFEQHPCLYCSDGNSDATFLLQPKAK" gene complement(18948387..18958994) /locus_tag="TCM_044719" /note="dbxref CacaoGD:Thecc1EG044719" mRNA complement(join(18948387..18948466,18949181..18949359, 18949553..18949618,18953458..18954004,18958838..18958994)) /locus_tag="TCM_044719" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(18948436..18948466,18949181..18949359, 18949553..18949618,18953458..18953862)) /locus_tag="TCM_044719" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19576.1" /translation="MQSSPKNAVGPLPFANDTIMVVSDDETSGQMDDDCEEDDTTNWN DEMDNDCEENYIDGHNDCSKEDKDDNNDIPNCNYADGSIKHATTIELEDVQCYDHATT IVLEDVQCDDPIYDNSIVGDNRIRSLDDSDQIMQCLIHLLCVPYGFHTSLCDAKMSFQ YLLFIFTFYRVDVNIDVALTGQLRWDQVVDMANIDDVVGKIDGHTDVALMPRDILGRD YLSTLTIV" gene 18958855..18960401 /locus_tag="TCM_044720" /note="dbxref CacaoGD:Thecc1EG044720" mRNA join(18958855..18959504,18959617..18960401) /locus_tag="TCM_044720" /product="Metacaspase 9" /inference="alignment:exonerate- protein:2:ricco:29822.m003455.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044718t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02510.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8735t1" CDS join(18959150..18959504,18959617..18960200) /locus_tag="TCM_044720" /note="paralog of Thecc1EG044718t1" /codon_start=1 /product="Metacaspase 9" /protein_id="EOY19577.1" /db_xref="Phytozome:POPTR_0016s02510.1" /db_xref="TAIR:AT5G04200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FYE1" /translation="MDKGKKRLAVLVGCNYANTQHELHGCINDVVAMREVLVERFGFD PSHIELLTDAPGSLVMPTGANIKASLNEMMNKAEAGDVLFFHYSGHGTRIPSWKPGHH FRQDEAIVPCDFNLITDVDFRQLVNRLPRGATFTILSDSCHSGGLIDKEKEQIGPSIV KNTTSVSYTVKTIPFQSVLRHLSSLTSINTSDIGTHLLEFFGADASLKFRLPKLESDL LESLKTDEGILLSGCQADETSADMNAIEGGGKAYGVFSNAVHMALNENSGALSNRKVV MMARRVLEAQGFAQHPCLYCSDGNADATFLLQPEAN" gene complement(18961651..18968712) /locus_tag="TCM_044721" /note="dbxref CacaoGD:Thecc1EG044721" mRNA complement(join(18961651..18962597,18968650..18968712)) /locus_tag="TCM_044721" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032186t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(18962053..18962544) /locus_tag="TCM_044721" /note="paralog of Thecc1EG032186t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19578.1" /translation="MARSSTKLAFLMLTLLEKANIIFIKFNVDRAARGCPGLAEIRKA LRDNNGYVIILFSKPLRVVNSNVVVITAIIKAFILFTTCPWAYSHELIVELDSSNVVK WCNDSSFATWRIRSTLNFINSLKHKILKWSVMHVPRSLNQLADCLAQEGVDRSIDILQ TFN" mobile_element complement(18962602..18969567) /note="source:INTACT746_F84_scaffold_2-int 1 6082" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18970326..18971306 /note="source:CACAO_M_E69938_F9_scaffold_9 1 991" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18971428..18972268 /locus_tag="TCM_044723" /note="dbxref CacaoGD:Thecc1EG044723" mRNA join(18971428..18971729,18971790..18972268) /locus_tag="TCM_044723" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s03760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003989t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s03760.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc781t1_C1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc781t1_C2" CDS join(18971538..18971729,18971790..18972050) /locus_tag="TCM_044723" /note="paralog of Thecc1EG003989t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY19579.1" /db_xref="Phytozome:POPTR_0002s03760.1" /db_xref="TAIR:AT1G03905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3EDJ0" /translation="MVGGRDVVRVLNRSAFHDTQLVCSGDLTYLGGSWSKTIGSAGEV PLQGDFSAEHMIFGVEGIDPVSDGQRQRVQICMGLLHPFQVLLLDEVTVNLDVVARMD LLDFFKEECEQRGATIVYATHIFDGLETWATHLAYIQDGELKRSEKLT" mobile_element complement(18972492..18979300) /note="source:CACAO_M_S_E32835_F9_scaffold_4 21 6871" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18978446..18998473) /locus_tag="TCM_044725" /note="dbxref CacaoGD:Thecc1EG044725" mRNA complement(join(18978446..18978582,18980150..18981037, 18998069..18998473)) /locus_tag="TCM_044725" /product="C2H2 and C2HC zinc fingers superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0025s00650.1" /inference="similar to AA sequence:Phytozome:POPTR_0025s00650.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(join(18980211..18981037,18998069..18998207)) /locus_tag="TCM_044725" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein, putative" /protein_id="EOY19580.1" /db_xref="Phytozome:POPTR_0025s00650.1" /translation="MLPIYLLVYVDNIILSGRLFSQLDNFILELDNEFSTKCFGQIHY FLAMVIISAELCPSEASSISATLEGVTPNKVNEAAKASESSLGILLDLKLFSDDSLCK PKIELNLFNPMSPTSSHSKDSGDHQTLREKRSDDSNRVFSCNYCKREFSTSQALGGHQ NAHKQERALAKRRQGMDVNGFGFPPYPYNPYSTISPHPFYGSLNRSPLGVRLDSMIHK PSYPWTSIGGFHHLGHGWSSQAILTPPRPTISERLSMNNGGFGISGPSSSSRFQETGA PCSFSDISQANVATNKAARSDYLQPSNPSGSDNNDASKIDLSLKL" mobile_element complement(18983340..18984136) /note="source:CACAO_M_E85278_F18_scaffold_10 4557 5386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18984178..18985961 /note="source:INTACT153_F18_scaffold_9-int 3647 5408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18987321..18987367) /note="source:INTACT537_F22_scaffold_2-int 1055 1101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18988615..18988706) /note="source:CACAO_M_E11746_F9_scaffold_2 2321 2408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18990732..18993390) /note="source:INTACT724_F4_scaffold_8-int 6356 8984" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18994030..18995257) /note="source:CACAO_M_S_E51565_F2_scaffold_4 1205 2451" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18995263..18995939) /note="source:CACAO_M_S_E51565_F2_scaffold_4 689 1362" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19008951..19010467) /note="source:CACAO_M_S_E6284_F17_scaffold_2 2 1545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19012175..19012256 /note="source:scaffold_9_CACTA_0929 4234 4322" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19012749..19012793 /note="source:scaffold_3_CACTA_0384 5564 5607" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19012949..19013683 /note="source:scaffold_2_CACTA_0269 6213 6935" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19014878..19015031) /note="source:CACAO_M_E3336_F73_scaffold_1 2555 2718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19014920..19015641 /note="source:scaffold_4_CACTA_0503 3219 3927" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19015980..19016801) /note="source:CACAO_M_E71704_F244_scaffold_10 1108 1930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19017340..19017916 /note="source:CACAO_M_S_E98445_F244_scaffold_8 1262 1831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19020677..19022639) /note="source:CACAO_M_E4368_F316_scaffold_2 3490 5404" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19022596..19022678) /note="source:INTACT265_F12_scaffold_7-int 12254 12337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19022613..19022739 /note="source:CACAO_M_E49559_F88_scaffold_7 7607 7762" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19025483..19025537 /note="source:CACAO_M_E34409_F73_scaffold_5 2281 2329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19025509..19029043 /note="source:CACAO_M_E44088_F76_scaffold_5 1958 5475" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19029653..19036484 /locus_tag="TCM_044728" /note="dbxref CacaoGD:Thecc1EG044728" mRNA join(19029653..19030256,19033112..19033184, 19033273..19033366,19034576..19034698,19034790..19034847, 19035237..19036057) /locus_tag="TCM_044728" /product="Nuclear factor Y isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040962t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19130.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4675t1" mRNA join(19029922..19030256,19033112..19033184, 19033273..19033366,19034630..19034698,19034790..19034847, 19035237..19036484) /locus_tag="TCM_044728" /product="Nuclear factor Y isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040962t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19130.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc47t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4675t1" CDS join(19030224..19030256,19033112..19033184, 19033273..19033366,19034576..19034698,19034790..19034847, 19035237..19035749) /locus_tag="TCM_044728" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040962t1" /codon_start=1 /product="Nuclear factor Y isoform 1" /protein_id="EOY19581.1" /db_xref="Phytozome:POPTR_0003s19130.1" /db_xref="TAIR:AT3G12480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LHG0" /translation="MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQ DLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLRDIVSRVPDYGHGHSDAGADDR TISKRRKAAGDEGNDSDEESKRSRMHDVGHAGTSGRGRGRGRGRGRGRGARNVERDSH RELEPEPCQPLQHSNKSLSTPGMVIDDGSESKELMKENTIGEDANQAVRNFDLNAEVD ENVDTKASAGASAAAATTATATAAAAAQPSSAEPTTETKHEEYPGWSLSEMDKMAIDP LQLAQLGRRLDEDEEDYDEEG" CDS join(19030224..19030256,19033112..19033184, 19033273..19033366,19034630..19034698,19034790..19034847, 19035237..19035749) /locus_tag="TCM_044728" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040962t1" /codon_start=1 /product="Nuclear factor Y isoform 2" /protein_id="EOY19582.1" /db_xref="Phytozome:POPTR_0003s19130.1" /db_xref="TAIR:AT3G12480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LHG0" /translation="MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQ DLCDRTYEITLQRGAKTMSSLHLRVPDYGHGHSDAGADDRTISKRRKAAGDEGNDSDE ESKRSRMHDVGHAGTSGRGRGRGRGRGRGRGARNVERDSHRELEPEPCQPLQHSNKSL STPGMVIDDGSESKELMKENTIGEDANQAVRNFDLNAEVDENVDTKASAGASAAAATT ATATAAAAAQPSSAEPTTETKHEEYPGWSLSEMDKMAIDPLQLAQLGRRLDEDEEDYD EEG" mRNA join(19033337..19033366,19034630..19034698, 19034795..19034847,19035237..19036484) /locus_tag="TCM_044728" /product="Nuclear factor Y isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07050.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19130.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc64t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4675t1" CDS join(19034644..19034698,19034795..19034847, 19035237..19035749) /locus_tag="TCM_044728" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Nuclear factor Y isoform 3" /protein_id="EOY19583.1" /db_xref="Phytozome:POPTR_0003s19130.1" /translation="MVMAILMLVLTIELFPKEAAGDEGNDSDEESKRSRMHDVGHAGT SGRGRGRGRGRGRGRGARNVERDSHRELEPEPCQPLQHSNKSLSTPGMVIDDGSESKE LMKENTIGEDANQAVRNFDLNAEVDENVDTKASAGASAAAATTATATAAAAAQPSSAE PTTETKHEEYPGWSLSEMDKMAIDPLQLAQLGRRLDEDEEDYDEEG" gene complement(19037255..19039009) /locus_tag="TCM_044729" /note="dbxref CacaoGD:Thecc1EG044729" mRNA complement(join(19037255..19037591,19038218..19038363, 19038478..19039009)) /locus_tag="TCM_044729" /product="Cysteine proteinase inhibitor 12" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400045978" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023881t1" /inference="similar to AA sequence:Phytozome:Glyma13g25870.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08206t00001" CDS complement(join(19037454..19037591,19038218..19038363, 19038478..19038913)) /locus_tag="TCM_044729" /note="paralog of Thecc1EG023881t1" /codon_start=1 /product="Cysteine proteinase inhibitor 12" /protein_id="EOY19584.1" /db_xref="Phytozome:Glyma13g25870.1" /db_xref="TAIR:AT3G12490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0X6" /translation="MRKPNCLLFSFFSVAIQFLFFDKFSAESILCSEPMATTLGGVHP SHGSQNSAELENLARFAVDEHNKKENAMVEFVRVVKATEQVVAGTLHHLTVEAIDAGK KKLYEAKVWVKPWMNFKELQEFKHAGDADVSPSFTASDLGVKKDVHGPGLQALPTHDP VVQDAANHAVKTIQQRSNSLVPYELKEIVHAKAEVLEDFAKLDMLLKVKRGDKEEKFK VEVHHKSEGTFHLNRMEPDHS" mobile_element complement(19039347..19040096) /note="source:CACAO_PIF_E144_scaffold_10 1202 1909" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(19040068..19048229) /locus_tag="TCM_044730" /note="dbxref CacaoGD:Thecc1EG044730" mRNA complement(join(19040068..19040709,19040960..19041126, 19041532..19041711,19042279..19042357,19042810..19042843, 19043132..19043174,19043247..19043397,19044814..19045458, 19047070..19047269,19047585..19048229)) /locus_tag="TCM_044730" /product="Cytochrome P450 superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036583001" /inference="similar to AA sequence:Phytozome:GSVIVT01036583001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5330t3" mRNA complement(join(19040106..19040707,19043247..19043397, 19044814..19045458,19047070..19047269,19047585..19048095)) /locus_tag="TCM_044730" /product="Cytochrome P450, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036583001" /inference="similar to AA sequence:Phytozome:GSVIVT01036583001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8056t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5330t3" mRNA complement(join(19040118..19040709,19040958..19041129, 19041532..19041711,19043247..19043397,19044814..19045458, 19047070..19047269,19047585..>19047851)) /locus_tag="TCM_044730" /product="Cytochrome P450, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036583001" /inference="similar to AA sequence:Phytozome:GSVIVT01036583001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5330t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5330t3" CDS complement(join(19040602..19040709,19040960..19041126, 19041532..19041711,19042279..19042357,19042810..19042843, 19043132..19043174,19043247..19043397,19044814..19045458, 19047070..19047269,19047585..19047882)) /locus_tag="TCM_044730" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cytochrome P450 superfamily protein, putative isoform 1" /protein_id="EOY19585.1" /db_xref="Phytozome:GSVIVT01036583001" /translation="MKSCTATTTATSNPFLSFFVRAWNSGSCDYSLDTSRFLRDYAVW EINAFLWISLITITCLLTNKLFQLFKLWTQARKIPGPPCPSFYGHFNTVSKQSLTELL SDSHGDYGSVVKLWLGPTQLLVSIKEPELIKEMLLKAKDKLPLTGKAFRLAFGRSTLF ASSFVKVEKRRESLASELNGRLIERANVIPTKAVDCIMEKLHHIMGKGSIDCKMVSQH MAFTLLGAMLFGDTFLAWSKATIYEELLMRIAKDACFWASYSVTPFWERGFWRYQRIC TKLKCLTQDLVQQCSKNYKLYHGMDPVSDNETANAGMEATVGSKSYSGIFLQDFFSLE ELNCHLKAREEPCGNIMGMMFHGCLTTAGLISNMLVRLVTHPETQHKIYSEIIMAQKG SGEIDQPNVEKMPLLLATVYESARLMPAGPLLQRCSLKHVFENYLGDGYGTCNKWYSE LAFPGFKGLRREAWLELNQASVSSLSSIRKSDQDLRLKSGVIIPAGAILVVPVQLVQM DDSSWGNDAAKFNPYRFLSTTEKTSGSLNKDISVAGPVELLDQGQSSFVLNDPNKNPA FLPFGSGTRACVCQKFVIQGIARLFASLLERYEVRLQPGSKTNSKPMTNDSLFQNFPS PEIAFAIRNN" CDS complement(join(19040667..19040707,19043247..19043397, 19044814..19045458,19047070..19047269,19047585..19047882)) /locus_tag="TCM_044730" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Cytochrome P450, putative isoform 5" /protein_id="EOY19589.1" /db_xref="Phytozome:GSVIVT01036583001" /translation="MKSCTATTTATSNPFLSFFVRAWNSGSCDYSLDTSRFLRDYAVW EINAFLWISLITITCLLTNKLFQLFKLWTQARKIPGPPCPSFYGHFNTVSKQSLTELL SDSHGDYGSVVKLWLGPTQLLVSIKEPELIKEMLLKAKDKLPLTGKAFRLAFGRSTLF ASSFVKVEKRRESLASELNGRLIERANVIPTKAVDCIMEKLHHIMGKGSIDCKMVSQH MAFTLLGAMLFGDTFLAWSKATIYEELLMRIAKDACFWASYSVTPFWERGFWRYQRIC TKLKCLTQDLVQQCSKNYKLYHGMDPVSDNETANAGMEATVGSKSYSGIFLQDFFSLE ELNCHLKAREEPCGNIMGMMFHGCLTTAGLISNMLVRLVTHPETQHKIYSEIIMAQKG SGEIDQPNVEKMPLLLATVYESARLMPAGPLLQRCSLKHGGFSQDQRQTQNQ" mRNA complement(join(<19040685..19040709,19040936..19041126, 19041532..19041711,19043247..19043397,19044814..19045458, 19047070..19047269,19047585..19048095)) /locus_tag="TCM_044730" /product="Cytochrome P450, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036583001" /inference="similar to AA sequence:Phytozome:GSVIVT01036583001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc224t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5330t3" mRNA complement(join(19040686..19041126,19041532..19041711, 19043247..19043397,19044814..19045458,19047070..19047269, 19047585..19048095)) /locus_tag="TCM_044730" /product="Cytochrome P450, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036583001" /inference="similar to AA sequence:Phytozome:GSVIVT01036583001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc224t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5330t3" CDS complement(join(<19040686..19040709,19040936..19041126, 19041532..19041711,19043247..19043397,19044814..19045458, 19047070..19047269,19047585..19047882)) /locus_tag="TCM_044730" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cytochrome P450, putative isoform 2" /protein_id="EOY19586.1" /db_xref="Phytozome:GSVIVT01036583001" /translation="MKSCTATTTATSNPFLSFFVRAWNSGSCDYSLDTSRFLRDYAVW EINAFLWISLITITCLLTNKLFQLFKLWTQARKIPGPPCPSFYGHFNTVSKQSLTELL SDSHGDYGSVVKLWLGPTQLLVSIKEPELIKEMLLKAKDKLPLTGKAFRLAFGRSTLF ASSFVKVEKRRESLASELNGRLIERANVIPTKAVDCIMEKLHHIMGKGSIDCKMVSQH MAFTLLGAMLFGDTFLAWSKATIYEELLMRIAKDACFWASYSVTPFWERGFWRYQRIC TKLKCLTQDLVQQCSKNYKLYHGMDPVSDNETANAGMEATVGSKSYSGIFLQDFFSLE ELNCHLKAREEPCGNIMGMMFHGCLTTAGLISNMLVRLVTHPETQHKIYSEIIMAQKG SGEIDQPNVEKMPLLLATVYESARLMPAGPLLQRCSLKHDLRLKSGVIIPAGAILVVP VQLVQMDDSSWGNDAAKFNPYRFLSTTEKTSGSLNKDISVAGPVELLDQGQSSFVLND PNKNPAFLPFGSGTRACVCQKFVIQGIARLFASLLERYEVCPMNNFLVRLQPGSK" CDS complement(join(19040706..19040709,19040958..19041129, 19041532..19041711,19043247..19043397,19044814..19045458, 19047070..19047269,19047585..>19047849)) /locus_tag="TCM_044730" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Cytochrome P450, putative isoform 4" /protein_id="EOY19588.1" /db_xref="Phytozome:GSVIVT01036583001" /translation="SNPFLSFFVRAWNSGSCDYSLDTSRFLRDYAVWEINAFLWISLI TITCLLTNKLFQLFKLWTQARKIPGPPCPSFYGHFNTVSKQSLTELLSDSHGDYGSVV KLWLGPTQLLVSIKEPELIKEMLLKAKDKLPLTGKAFRLAFGRSTLFASSFVKVEKRR ESLASELNGRLIERANVIPTKAVDCIMEKLHHIMGKGSIDCKMVSQHMAFTLLGAMLF GDTFLAWSKATIYEELLMRIAKDACFWASYSVTPFWERGFWRYQRICTKLKCLTQDLV QQCSKNYKLYHGMDPVSDNETANAGMEATVGSKSYSGIFLQDFFSLEELNCHLKAREE PCGNIMGMMFHGCLTTAGLISNMLVRLVTHPETQHKIYSEIIMAQKGSGEIDQPNVEK MPLLLATVYESARLMPAGPLLQRCSLKHDLRLKSGVIIPAGAILVVPVQLVQMDDSSW GNDAAKFNPYRFLSTTEKTSGSLNKDISVAAGPVELLDQGQSSFVLNDPNKNPAFLPF GSGTRACVCQKFVIQGIARLFASLLERYEV" CDS complement(join(19040870..19041126,19041532..19041711, 19043247..19043397,19044814..19045458,19047070..19047269, 19047585..19047882)) /locus_tag="TCM_044730" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cytochrome P450, putative isoform 3" /protein_id="EOY19587.1" /db_xref="Phytozome:GSVIVT01036583001" /translation="MKSCTATTTATSNPFLSFFVRAWNSGSCDYSLDTSRFLRDYAVW EINAFLWISLITITCLLTNKLFQLFKLWTQARKIPGPPCPSFYGHFNTVSKQSLTELL SDSHGDYGSVVKLWLGPTQLLVSIKEPELIKEMLLKAKDKLPLTGKAFRLAFGRSTLF ASSFVKVEKRRESLASELNGRLIERANVIPTKAVDCIMEKLHHIMGKGSIDCKMVSQH MAFTLLGAMLFGDTFLAWSKATIYEELLMRIAKDACFWASYSVTPFWERGFWRYQRIC TKLKCLTQDLVQQCSKNYKLYHGMDPVSDNETANAGMEATVGSKSYSGIFLQDFFSLE ELNCHLKAREEPCGNIMGMMFHGCLTTAGLISNMLVRLVTHPETQHKIYSEIIMAQKG SGEIDQPNVEKMPLLLATVYESARLMPAGPLLQRCSLKHDLRLKSGVIIPAGAILVVP VQLVQMDDSSWGNDAAKFNPYRFLSTTEKTSGSLNKDISVAGPVELLDQGQSSFVLND PNKNPAFLPFGSGTRACVCQKFVIQGIARLFASLLERYEVCPMNNFLVICRASFNFCY NQSSSEVIIR" mobile_element 19054081..19054307 /note="source:scaffold_5_CACTA_0610 5116 5348" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19054947..19055051 /note="source:scaffold_5_CACTA_0607 9990 10097" /mobile_element_type="transposon:TIR/CACTA" gene 19055500..19064504 /locus_tag="TCM_044731" /note="dbxref CacaoGD:Thecc1EG044731" mRNA join(19055500..19055762,19055866..19056072, 19056786..19057031,19057139..19057354,19059305..19059460, 19059557..19059716,19060647..19060798,19061470..19061557, 19062526..19062599,19062678..19062752,19063518..19063816, 19064108..19064504) /locus_tag="TCM_044731" /product="65-kDa microtubule-associated protein 5 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29686.m000864" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030789t5" /inference="similar to AA sequence:Phytozome:GSVIVT01036585001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8169t3" mRNA join(19055527..19055762,19055866..19056072, 19056786..19057031,19057139..19057354,19059305..19059460, 19059557..19059716,19060647..19060798,19061470..19061557, 19062526..19062599,19062678..19062752,19062972..19063033) /locus_tag="TCM_044731" /product="65-kDa microtubule-associated protein 5 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29686.m000864" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030789t5" /inference="similar to AA sequence:Phytozome:GSVIVT01036585001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc432t4; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8169t3" CDS join(19055688..19055762,19055866..19056072, 19056786..19057031,19057139..19057354,19059305..19059460, 19059557..19059716,19060647..19060798,19061470..19061557, 19062526..19062599,19062678..19062752,19063518..19063766) /locus_tag="TCM_044731" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030789t5" /codon_start=1 /product="65-kDa microtubule-associated protein 5 isoform 1" /protein_id="EOY19590.1" /db_xref="Phytozome:GSVIVT01036585001" /db_xref="TAIR:AT2G38720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVJ3" /translation="MTTLPPSLSPCHSQTTCASLLQELQIIWDEIGESDGERDKMLLE LEQECLDIYRRKVEMTRKYKADLHHSLAQSESEIANLVSALGEHSLSFSRGKGTLKQQ ISAVRPVLEDLRSKKEQRMKDFTETQSQIIRICAEIAGNSQDIMSADPQVNEHDMTIK KLGELKSHLQELQNEKIIRLQKVNSHINMIHELSVLMSFDFLKTVSGIHPGLIDTPNG QSKSISNDTLAKLTGIIHSLQQEKQKRLQKLQSLGSILMELWNLLDSPADERKKFEHV TSLISSSIDEVSRQGCLGLDVIEQVEVHVERLNVLKASKMKELVFKRQNELEEIYRGV HMDVNSDAARQLLINLIESGDVDLSNLLSSMDDEITKAKQEALSRKDILDKVEKWKHA SEEEKWLDDYEKDENRYTAGRGVHKNLKRAEKARILVGKLPAIVETLTAKVKAWELEK GIPFLYDKISLLNKLEEYTVLRQEREEEKRRSREQKRLQEQFAAEQEALFGSRPKKPL GQTNTMVGTPIGRRVSTPSSRHGVSSLKERRESGRVNNVIPLNFVALPKDDSVSRGS" CDS join(19055688..19055762,19055866..19056072, 19056786..19057031,19057139..19057354,19059305..19059460, 19059557..19059716,19060647..19060798,19061470..19061557, 19062526..19062599,19062678..19062752,19062972..19063001) /locus_tag="TCM_044731" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030789t5" /codon_start=1 /product="65-kDa microtubule-associated protein 5 isoform 2" /protein_id="EOY19591.1" /db_xref="Phytozome:GSVIVT01036585001" /db_xref="TAIR:AT2G38720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVJ3" /translation="MTTLPPSLSPCHSQTTCASLLQELQIIWDEIGESDGERDKMLLE LEQECLDIYRRKVEMTRKYKADLHHSLAQSESEIANLVSALGEHSLSFSRGKGTLKQQ ISAVRPVLEDLRSKKEQRMKDFTETQSQIIRICAEIAGNSQDIMSADPQVNEHDMTIK KLGELKSHLQELQNEKIIRLQKVNSHINMIHELSVLMSFDFLKTVSGIHPGLIDTPNG QSKSISNDTLAKLTGIIHSLQQEKQKRLQKLQSLGSILMELWNLLDSPADERKKFEHV TSLISSSIDEVSRQGCLGLDVIEQVEVHVERLNVLKASKMKELVFKRQNELEEIYRGV HMDVNSDAARQLLINLIESGDVDLSNLLSSMDDEITKAKQEALSRKDILDKVEKWKHA SEEEKWLDDYEKDENRYTAGRGVHKNLKRAEKARILVGKLPAIVETLTAKVKAWELEK GIPFLYDKISLLNKLEEYTVLRQEREEEKRRSRVLPGALDRW" mobile_element 19064928..19065017 /note="source:CACAO_M_E49559_F88_scaffold_7 7626 7723" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19068638..19070556 /note="source:CACAO_hAT_E410_scaffold_1 601 2489" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(19072893..19074003) /note="source:CACAO_Again_on_E217_scaffold_10 1 1111" /mobile_element_type="transposon:TIR/hAT" gene complement(19076345..19078875) /locus_tag="TCM_044732" /note="dbxref CacaoGD:Thecc1EG044732" mRNA complement(join(19076345..19076864,19077191..19077342, 19077448..19077609,19077707..19077956,19078076..19078192, 19078295..19078447,19078541..19078875)) /locus_tag="TCM_044732" /product="Nodulin MtN21 /EamA-like transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044735t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19170.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc2853t1" CDS complement(join(19076585..19076864,19077191..19077342, 19077448..19077609,19077707..19077956,19078076..19078192, 19078295..19078447,19078541..19078740)) /locus_tag="TCM_044732" /note="paralog of Thecc1EG044735t1" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein" /protein_id="EOY19592.1" /db_xref="Phytozome:POPTR_0003s19170.1" /db_xref="TAIR:AT5G07050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL41" /translation="MEKLRCGSFLESSKPYFAMISLQFGYAGMNIITKVSLNRGMSHY VLVVYRHAFATAVIAPFALIFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSK ITFPVFMQIFILALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVMCRMEK VDVKKVRCQAKIVGTLVTVAGAMLMTLYKGPIVELFWTKSIHPRQSNGTDSAGTTDKD WVKGSIFLIIATLAWASLFVLQAKALKTYKNHQLSLTSLVCFVGTLQAIVVTFVMERK TSAWQIGWDMNLLAAAYAGIVTSSISYYVQGMVIKKRGPVFATAFSPLMMIIVAIMGS FILAEKIFLGGVIGAILIVMGLYSVLWGKHKENKEKEVNEEEIPEPVKIQANGNTILV IEDIEANEVELKKLAEANKLSAVAITMPMPESPMKVNQDQTSFKV" mobile_element complement(19082358..19082433) /note="source:scaffold_2_CACTA_0239 7781 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19082442..19082529) /note="source:scaffold_2_CACTA_0239 7777 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19082519..19082594) /note="source:scaffold_2_CACTA_0239 7781 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19082604..19085508) /note="source:scaffold_2_CACTA_0239 5014 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19086260..19087947 /note="source:CACAO_LINE_E_205_scaffold_8 5 1690" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 19094287..19095442 /note="source:INTACT1334F_F383_scaffold_8-int 2929 4109" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19098255..19113125) /locus_tag="TCM_044735" /note="dbxref CacaoGD:Thecc1EG044735" mRNA complement(join(19098255..19098262,19110789..19111207, 19111536..19111687,19111793..19111846,19111904..19111954, 19112052..19112301,19112421..19112465,19112637..19112699, 19112793..19113125)) /locus_tag="TCM_044735" /product="Nodulin MtN21 /EamA-like transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025798001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044732t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19170.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5406t1" mobile_element complement(19102516..19102591) /note="source:scaffold_5_CACTA_0596 1728 1798" /mobile_element_type="transposon:TIR/CACTA" gene 19104918..19108658 /locus_tag="TCM_044736" /note="dbxref CacaoGD:Thecc1EG044736" mRNA join(19104918..19105381,19106002..19106038, 19106150..19106200,19106278..19106420,19108595..19108658) /locus_tag="TCM_044736" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044731t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19160.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(19105152..19105381,19106002..19106038, 19106150..19106200,19106278..19106340) /locus_tag="TCM_044736" /note="paralog of Thecc1EG044731t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19594.1" /db_xref="Phytozome:POPTR_0003s19160.1" /translation="MLYICYCFQVEVHVERLNVLKASKMKELVFKRQNELEEIYRGVH MDVNSDAARQLLINLLESGSAKLSPCSGLSISSTFLSIIIALQNLVMKSFFAVNILNK SATMICPICFQAWMMRLQKPNRKL" mobile_element complement(19107233..19108341) /note="source:CACAO_Again_on_E217_scaffold_10 1 1111" /mobile_element_type="transposon:TIR/hAT" CDS complement(join(19110928..19111207,19111536..19111687, 19111793..19111846,19111904..19111954,19112052..19112301, 19112421..19112465,19112637..19112699,19112793..19112992)) /locus_tag="TCM_044735" /note="paralog of Thecc1EG044732t1" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein" /protein_id="EOY19593.1" /db_xref="Phytozome:POPTR_0003s19170.1" /db_xref="TAIR:AT5G07050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL41" /translation="MEKLRCGSFLESSKPYFAMISLQFGYAGMNIITKVSLNRGMSHY VLVVYRHAFATAVIAPFALIFERRGQSKITFPVFMQIFILALLGNILPAMTFVMAVMC RMEKIDVKKVRCQAKIVGTLVTVAGAMLMTLNKGPIVELFWTKSIHPRQSTGTDTAGT TDKDWVKGSILLIIATLAWASLFVLQAKALKTYKNHHLSLTSLTSAWQIGWDMNLLAA AYAGIVTSSISYYVQGMVIKKRGPVFATAFSPLMMIIVAIMGSFILAEKIFLGGVIGA IWIVIGLYSVLWGKHKENKEKEVNEEEIPEPVKIQANGNTILVIEDIEANEVEFKKLA EANKLSAVAIAMPMPESPMKANQDQTSFKD" mobile_element 19114318..19114370 /note="source:scaffold_4_CACTA_0482 16744 16795" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19116168..19116243) /note="source:scaffold_2_CACTA_0239 7781 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19116252..19116327) /note="source:scaffold_2_CACTA_0239 7781 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19116336..19116423) /note="source:scaffold_2_CACTA_0239 7777 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19116413..19116488) /note="source:scaffold_2_CACTA_0239 7781 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19116498..19119382) /note="source:scaffold_2_CACTA_0239 5018 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19120138..19121750) /note="source:CACAO_LINE_E_108_scaffold_4 1437 3047" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(19121993..19122114) /note="source:CACAO_Mutator_E1888_scaffold_9 316 436" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19122108..19122223 /note="source:CACAO_Mutator_E161_scaffold_1 5878 5993" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19122244..19122548 /note="source:scaffold_1_CACTA_0009 8921 9252" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19122495..19122556 /note="source:CACAO_Mutator_E1888_scaffold_9 4725 4787" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19122547..19122586) /note="source:CACAO_M_E35704_F13_scaffold_5 364 403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19122617..19126769 /note="source:scaffold_1_CACTA_0009 9411 13830" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19128747..19128997 /note="source:scaffold_1_CACTA_0008 1115 1353" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19129080..19129323 /note="source:INTACT687_F13_scaffold_3-int 1719 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19130683..19132264 /locus_tag="TCM_044739" /note="dbxref CacaoGD:Thecc1EG044739" mRNA 19130683..19132264 /locus_tag="TCM_044739" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene27279" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044743t1" /inference="similar to AA sequence:frave:gene00151" /note="quality class is medium-utrpoor, express is none, homology is paralog strong, intron is none, protein is utrpoor_complete" CDS 19131209..19131721 /locus_tag="TCM_044739" /note="dbxref frave:gene00151; paralog of Thecc1EG044743t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19595.1" /translation="MEDNNAVAPLLVGLRFQPSDAMLLGYLFSKITGKSRLHLDQQVI KDFDLYGEKEPWEIWELYGGDNLRSGEDLYFFTQSKKKTQNSSKMNRLIGTGTWMITG PAEAITYSQLSAQPLGFKKRFRYKGEVAQQVSQWIMFEYSLDTNLVSKNDCNYVLCQL KKKDLKEEKG" mobile_element 19133615..19134324 /note="source:CACAO_M_E10278_F15_scaffold_2 1 718" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19138206..19139455) /locus_tag="TCM_044740" /note="dbxref CacaoGD:Thecc1EG044740" mRNA complement(join(19138206..19138826,19138898..19139455)) /locus_tag="TCM_044740" /product="Alpha/beta-Hydrolases superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044744t1" /inference="similar to AA sequence:ricco:29686.m000861" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS complement(join(19138480..19138826,19138898..19139237)) /locus_tag="TCM_044740" /note="dbxref ricco:29686.m000861; paralog of Thecc1EG044744t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY19596.1" /db_xref="TAIR:AT5G27320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQQ0" /translation="MAEAVPPHEEFIEGVATRDVTSDSDSSLKVRIHLLEQSLTTKTK LPIILHFHGGGFCISQADWYMYYIIYTRLARSVPAICVSVYLRLAPENKLPAACDDGY ATLLWLKSLAKGGNIMHQVAARAGNLDLSPLRLAGGIPIHPGFVRAERSKLELEQPES PFLTLDMVDKFLALALPVGSTKDHPITCPMGPAAPAMEGLNLPPFLFCVAENDLIKDT EMEYYEAMKS" gene complement(19145537..19149900) /locus_tag="TCM_044741" /note="dbxref CacaoGD:Thecc1EG044741" mRNA complement(join(19145537..19146079,19146096..19147859, 19147965..19148858,19149834..19149900)) /locus_tag="TCM_044741" /product="Receptor like protein 6, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044742t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13460.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(join(19145968..19146079,19146096..19147859, 19147965..19148815)) /locus_tag="TCM_044741" /note="paralog of Thecc1EG044742t1" /codon_start=1 /product="Receptor like protein 6, putative" /protein_id="EOY19597.1" /db_xref="Phytozome:POPTR_0016s13460.1" /db_xref="TAIR:AT1G45616.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGI7" /translation="MGSPLYLSISISLLNLLLLFFLVSSVRPLCHPDERSALLQFKES FVINNSASGSLDAHAKTESWKLERESGDCCSWDGVECDNGTGHVTGLNLGSSYLYGSI DSSSSLFHLVHLQRLNLADNVFKNSKVPSEVRNLSRLTSLNLSYSEFSGQIPSEILEL SELQLLDLSGNSLKLRKTGLSSLLEKLTKLQVLYLTDVRISSSVPNILANFSSLKALI LSNCDLRGEFPTGIFELPALQFLSLRSNPKLTGYLPDIQSNHPLLKLSLANTSFFGQM PESFGNFNFWRPIPPSLGNLKQLMTLDFSHNNFSGEIPSSLVNLTQLVYLSLATNHFD PGTISWLGTQINLSYLGLSNTRLAGTIPSALKNLTQITSLDLWSNRLEGQIPPWIGNL TKLTRIQFQENILSGPIPESIFKLENLELLYLHANQLNGILKLDSFLELKNLTRLQLS GNNLSLLNTVGINATAPKLKLLGLASCNLSEFPDFLRSQDELEFLELAGNNIHGQIPK WFLRVGKETLWYLNLGFNFLTRFEELPAVLPWTSLELFKLKSNMFQGPLPHPPPSIVD YVFSNNSLSGEIPPILCNLSFLVALDLSDNNLTGILPRCLVNLSDSLEVLNLRNNHFA GAIPSTYTKSCGLRMMDLSQNQLKGRVPRSLAHCTKLEFLNLGNNLINDTFPSWLGTL PELKVLILRANGLHGVIGKPQAKSEFSKLQVIDLSDNSLRGKLPSEYFSVWVAMKLAN TTSLSPYMKANTSFKARGYSLSNNYPYVVTLANKDRDLNYENVPDSISAIDLSSNQFQ GEIPEVIGNLKLIRMLNLSNNNITGHIPSSLGEITNLESLDLSRNKLSGQIPQQLANI NFLEVFKVSYNNLEGPSWIPLIMIRTREIQDCVDTLCQKIVEILKSCSHHLL" gene complement(19151722..19155684) /locus_tag="TCM_044742" /note="dbxref CacaoGD:Thecc1EG044742" mRNA complement(19151722..19155684) /locus_tag="TCM_044742" /product="Receptor like protein 6, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044531t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13460.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8852t1" CDS complement(19152160..19155171) /locus_tag="TCM_044742" /note="paralog of Thecc1EG044531t1" /codon_start=1 /product="Receptor like protein 6, putative" /protein_id="EOY19598.1" /db_xref="Phytozome:POPTR_0016s13460.1" /db_xref="TAIR:AT1G47890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGI7" /translation="MGSPLYLSISISLLNLLLLFFLVSSVRPLCHPDERSALLQFKES FVINNSASSSPDAHAKTESWKLERESGDCCSWDGVECDNGTGHVTGLNLGSSYLYGSI DSSSSLFHLVHLQRLNLADNVFENSKVPSEVRNLSRLTSLDLSYSEFSGQIPSEILEL SELELLDLSGNSLKLGKTGFSSLLEKLTKLQGLYLTDVRISSSLPNILANFSSLKALI LSNCDLRGEFPTGIFELPALQFLSLRSNPKLTGYLPDIQSNHPLLKLSLANTSFLGQL PESFGNFKSLEFLDINNCHFSGKLPCSLGNLTKLNYLDLSFNSFWRPIPPSVGNLKQF MTLDFSSNNFSGEIPSSIANLTQLVYLSLANNNFDRGTLSWLGTQINLTYLDLTNTGL SGKIPSALKNLTQITTLYLWSNRLEGQIPPWIGNLTKLTEIKFQENILSGPIPESIFK LENLELLYLHDNQLNGILKLDSFLELKYLTRLQLSGNNLSLLNTVGINATAPKFKILG LALCNLSEFPDFLRSQDELGFLELTGNNIHGQIPKWFLRVGKETLQYLNLGFNFLTRF EELPVVLPWTSLEVFKLRSNMFRGPLPHPPPSIVNYAFSNNSLSGEIPPILCNLSFLV ALDLSDNNLTGMLPRCLVNQSDYLKVLNLRNNRFACAIPSTYTKSCGLRMMDLSQNQL KGRIPRSLAHCTKLEFLNLGNNLINDTFPSWLGTLPELKVLILRANGLHGVIGKPQAK SEFSNLQIIDLSDNSLRGKLPSEYFSIWVAMKLANTNSLSPYMNAHTSFQTSGYEWSN YDNLKVILANKGRDLVYEYLPDSMSAIDLSSNKFQGEIPEAIGDLKLTRVLNLSNNNI TGHIPSSLGEITNLESLDLSRNKLLGEIPQHLANINFLEVFKVSYNNLEGPIPRGAQF DTFNNDSYEGNSRLCGYPLLKNCGNPKVLQPPPPLTSKEDEGISFKFGWKIVLTGYGV GLIIGLSHGYNFTTRKHEWFVKVVRKWQRFV" gene complement(19160874..19162007) /locus_tag="TCM_044744" /note="dbxref CacaoGD:Thecc1EG044744" mRNA complement(19160874..19162007) /locus_tag="TCM_044744" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g15930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044745t1" /inference="similar to AA sequence:ricco:29686.m000861" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7612t6" CDS complement(19160968..19161948) /locus_tag="TCM_044744" /note="dbxref ricco:29686.m000861; paralog of Thecc1EG044745t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY19599.1" /db_xref="TAIR:AT1G68620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQQ0" /translation="MEQEKKLVDEVSGWLRAYDDGSVDRTWTGPPEVKFMTEAVPPHE EFIEGVATRDVTIDSDSSLRVRIYLPEQSLTTKTKLPIILHFHGGGFCISQADWYMHY IIYTRLARSVPAICVSVYLRLAPENKLPAACDDGYATLLWLKSLAKGESHEPWLNDHV DFNRVFLIGDSSGGNIMHQVAARAGNLDLSPLRLAGGIPIHPGFVRAERSKSELEQPE SPFLTLDMVDKFLALALPVGSTKGHPITCPMGLAAPAMEGLNLPPFLFCVVEKDLIKD TEMEYYEAMKSQKHKFGKSSLSVKSFVVINLLWRHFFLLMGFYRSSMYCL" mobile_element 19165847..19167379 /note="source:CACAO_Helitron_E2_scaffold_1 218 1750" /mobile_element_type="transposon:Helitron" gene complement(19169372..19173739) /locus_tag="TCM_044745" /note="dbxref CacaoGD:Thecc1EG044745" mRNA complement(join(19169372..19170786,19173679..19173739)) /locus_tag="TCM_044745" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29686.m000861" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044744t1" /inference="similar to AA sequence:ricco:29686.m000861" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc30t9" CDS complement(19169702..19170709) /locus_tag="TCM_044745" /note="dbxref ricco:29686.m000861; paralog of Thecc1EG044744t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY19600.1" /db_xref="TAIR:AT5G16080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQQ0" /translation="MVQEKKLVDEVSGWLRAYDDGSVDRTWTGPPEVKFMAEAVPPHE DFIEGVATRDVTIDSNSGLRVRIYLPEQVLTAKTKLPILLHFHGGGFCISQADWYMYY HIYARLARSVPAICVSVYLRLAPENKLPAACDDGYATLLWLKSLAKGESHEPWLNDHA DFNRVFLIGDSSGGNIVHQVAVRAGNLDLSPLRLAGGIPIHPGFVRAERSKSELEQPE SPFLTLDMVDKFLALALPIGSTKDHPITCPMGPAAPAMEGLNLPPFLFCVAEKDLIKD TEMEYYEAMRNANKEVELLISPGMGHSFYLNKIAVDMDPNYAAQTASLIAGIKEFVNK H" gene complement(19173786..19175117) /locus_tag="TCM_044746" /note="dbxref CacaoGD:Thecc1EG044746" mRNA complement(19173786..19175117) /locus_tag="TCM_044746" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:frave:gene21464.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044745t1" /inference="similar to AA sequence:ricco:29686.m000861" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6388t2" CDS complement(19174099..19174938) /locus_tag="TCM_044746" /note="dbxref ricco:29686.m000861; paralog of Thecc1EG044745t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY19601.1" /db_xref="TAIR:AT1G68620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQQ0" /translation="MVQEKKLVDEVLGWLRAYDDGSVDRTFTGPPEVKFMAEAVPPHE EFIEGVATSDVTIDSNSGLRVRIYLPEQIPTAKTKLPIMLHFHGGGFCISQADWYVYY HIYTRLARSLPAICVSVYLRLAPENRLPAACDDGYAALLWLRSLAKSESHESWLNDHA DFNNVFLIGDSTGGNIVHQVAARAGNLDLSPLRLAGGILIHPGFVRAERSKSELEQPE SPFLTLDMVDKFLAMALPLGSSKNHPITCPMGPVAQPMESLNLPPFLLCVAETEGHRD GIL" mobile_element 19178308..19179027 /note="source:scaffold_9_CACTA_0934 9886 10640" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19178748..19179443) /note="source:scaffold_5_CACTA_0607 4006 4734" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19179402..19180705 /note="source:scaffold_9_CACTA_0934 13572 14876" /mobile_element_type="transposon:TIR/CACTA" gene 19181526..19182265 /locus_tag="TCM_044747" /note="dbxref CacaoGD:Thecc1EG044747" mRNA 19181526..19182265 /locus_tag="TCM_044747" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06960.1" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5326t1" CDS 19181693..19182124 /locus_tag="TCM_044747" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19602.1" /translation="METMTAIWDAPYGILGLILRQADGAWAVVGPRQTTAFAENNLRV GLDHGPIEAQNHYNRVILVHNWSLGHPIAIVVGIPATITAAAAATASTITATSFNSYA SVGSEHDGGDEYKDAYCNGYAITKADSGGGSRRVGRRHIYL" gene 19183442..19190050 /locus_tag="TCM_044748" /note="dbxref CacaoGD:Thecc1EG044748" mRNA join(19183442..19183703,19184446..19184870, 19185364..19185485,19185604..19185799,19187068..19187185, 19187274..19187321,19187788..19187888,19188632..19188749, 19189672..19190050) /locus_tag="TCM_044748" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29686.m000858" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035745t1" /inference="similar to AA sequence:frave:gene21441" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b043175t1a2; alternateUTRof:Thecc1EG044748t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5328t1" mRNA join(19183442..19183703,19184446..19184870, 19185364..19185485,19185604..19185799,19187068..19187185, 19187274..19187321,19187788..19187888,19188632..19188745, 19189672..19190032) /locus_tag="TCM_044748" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29686.m000858" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035745t1" /inference="similar to AA sequence:frave:gene21441" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b043175t1a3; alternateUTRof:Thecc1EG044748t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5328t1" mRNA join(19183442..19183703,19184446..19184870, 19185364..19185485,19185604..19185799,19187068..19187185, 19187274..19187321,19187788..19187888,19188632..19188755, 19189672..19189736) /locus_tag="TCM_044748" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29686.m000858" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035745t1" /inference="similar to AA sequence:frave:gene21441" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5328t1" mRNA join(19183478..19183703,19184446..19184870, 19185364..19185485,19185604..19185799,19187068..19187185, 19187274..19187324,19187788..19187888,19188632..19188749, 19189672..19190032) /locus_tag="TCM_044748" /product="Kinase superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29686.m000858" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035745t3" /inference="similar to AA sequence:frave:gene21441" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5328t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5328t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc645t3" mRNA join(19183502..19183703,19184446..19184870, 19185364..19185485,19185604..19185799,19187068..19187185, 19187274..19187338,19187788..>19187817) /locus_tag="TCM_044748" /product="Kinase superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:29686.m000858" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035745t2" /inference="similar to AA sequence:frave:gene21441" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc664t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5328t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc645t3" CDS join(19184529..19184870,19185364..19185485, 19185604..19185799,19187068..19187185,19187274..19187324, 19187788..19187888,19188632..19188730) /locus_tag="TCM_044748" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene21441; paralog of Thecc1EG035745t3" /codon_start=1 /product="Kinase superfamily protein isoform 4" /protein_id="EOY19606.1" /db_xref="TAIR:AT1G74320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L518" /translation="MGASTNKENRLPREVKDALQLLASDWDDVVDSKALQVIPLKGAM TNQVFQIKWPTRTDEVSRKVLVRIYGEGVEVFFDRDNEIRTFEFMSKHRQGPRLLGRF PNGRIEEFIRARTLSASDLRDPNVSALIAAKLREFHELDMPGPKKVWLWDRLQNWLNA AKRVCPLEEAKAFRLEVIEEEISMLEKKLSGCHQHIGFCHNDLQYGNIMIDEETKSIT IIDYEYASYNPVAYDIANHFCEMAADYHTEMPHIMDYSKYPGWGERLRFLRIYLHSSG SKEPRDTEVDQLLKDVEKFTLASHLTWGLWGIISEHVNEIDFDYKEYAKQRFQQYWMQ RPELLGSS" CDS join(19184529..19184870,19185364..19185485, 19185604..19185799,19187068..19187185,19187274..19187321, 19187788..19187888,19188632..19188730) /locus_tag="TCM_044748" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene21441; paralog of Thecc1EG035745t1" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY19603.1" /db_xref="TAIR:AT1G74320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L518" /translation="MGASTNKENRLPREVKDALQLLASDWDDVVDSKALQVIPLKGAM TNQVFQIKWPTRTDEVSRKVLVRIYGEGVEVFFDRDNEIRTFEFMSKHRQGPRLLGRF PNGRIEEFIRARTLSASDLRDPNVSALIAAKLREFHELDMPGPKKVWLWDRLQNWLNA AKRVCPLEEAKAFRLEVIEEEISMLEKKLSGCHQHIGFCHNDLQYGNIMIDEETKSIT IIDYEYASYNPVAYDIANHFCEMAADYHTEMPHIMDYSKYPGWGERLRFLRIYLHSSG KEPRDTEVDQLLKDVEKFTLASHLTWGLWGIISEHVNEIDFDYKEYAKQRFQQYWMQR PELLGSS" CDS join(19184529..19184870,19185364..19185485, 19185604..19185799,19187068..19187185,19187274..19187321, 19187788..19187888,19188632..19188730) /locus_tag="TCM_044748" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene21441; paralog of Thecc1EG035745t1" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY19604.1" /db_xref="TAIR:AT1G74320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L518" /translation="MGASTNKENRLPREVKDALQLLASDWDDVVDSKALQVIPLKGAM TNQVFQIKWPTRTDEVSRKVLVRIYGEGVEVFFDRDNEIRTFEFMSKHRQGPRLLGRF PNGRIEEFIRARTLSASDLRDPNVSALIAAKLREFHELDMPGPKKVWLWDRLQNWLNA AKRVCPLEEAKAFRLEVIEEEISMLEKKLSGCHQHIGFCHNDLQYGNIMIDEETKSIT IIDYEYASYNPVAYDIANHFCEMAADYHTEMPHIMDYSKYPGWGERLRFLRIYLHSSG KEPRDTEVDQLLKDVEKFTLASHLTWGLWGIISEHVNEIDFDYKEYAKQRFQQYWMQR PELLGSS" CDS join(19184529..19184870,19185364..19185485, 19185604..19185799,19187068..19187185,19187274..19187321, 19187788..19187888,19188632..19188730) /locus_tag="TCM_044748" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene21441; paralog of Thecc1EG035745t1" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY19605.1" /db_xref="TAIR:AT1G74320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L518" /translation="MGASTNKENRLPREVKDALQLLASDWDDVVDSKALQVIPLKGAM TNQVFQIKWPTRTDEVSRKVLVRIYGEGVEVFFDRDNEIRTFEFMSKHRQGPRLLGRF PNGRIEEFIRARTLSASDLRDPNVSALIAAKLREFHELDMPGPKKVWLWDRLQNWLNA AKRVCPLEEAKAFRLEVIEEEISMLEKKLSGCHQHIGFCHNDLQYGNIMIDEETKSIT IIDYEYASYNPVAYDIANHFCEMAADYHTEMPHIMDYSKYPGWGERLRFLRIYLHSSG KEPRDTEVDQLLKDVEKFTLASHLTWGLWGIISEHVNEIDFDYKEYAKQRFQQYWMQR PELLGSS" CDS join(19184529..19184870,19185364..19185485, 19185604..19185799,19187068..19187185,19187274..19187338, 19187788..>19187817) /locus_tag="TCM_044748" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene21441; paralog of Thecc1EG035745t2" /codon_start=1 /product="Kinase superfamily protein isoform 5" /protein_id="EOY19607.1" /db_xref="TAIR:AT1G74320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L518" /translation="MGASTNKENRLPREVKDALQLLASDWDDVVDSKALQVIPLKGAM TNQVFQIKWPTRTDEVSRKVLVRIYGEGVEVFFDRDNEIRTFEFMSKHRQGPRLLGRF PNGRIEEFIRARTLSASDLRDPNVSALIAAKLREFHELDMPGPKKVWLWDRLQNWLNA AKRVCPLEEAKAFRLEVIEEEISMLEKKLSGCHQHIGFCHNDLQYGNIMIDEETKSIT IIDYEYASYNPVAYDIANHFCEMAADYHTEMPHIMDYSKYPGWGERLRFLRIYLHSSG ICLLHVRNPETLKWT" gene complement(19190273..19192394) /locus_tag="TCM_044749" /note="dbxref CacaoGD:Thecc1EG044749" mRNA complement(join(19190273..19190848,19191161..19191295, 19192013..19192394)) /locus_tag="TCM_044749" /product="Proline-rich family protein" /inference="alignment:exonerate- protein:2:ricco:29686.m000859" /inference="similar to AA sequence:Phytozome:POPTR_0003s19210.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4650t1" CDS complement(join(19190486..19190848,19191161..19191295, 19192013..19192183)) /locus_tag="TCM_044749" /codon_start=1 /product="Proline-rich family protein" /protein_id="EOY19608.1" /db_xref="Phytozome:POPTR_0003s19210.1" /db_xref="TAIR:AT5G07020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL44" /translation="MACASQAMISANSCAFTSPKLFKKCYELNNKTSFFTVRASSDDS DDCNEEECAPDKEVGKVSVEWLAGDKTKVVGTYPPRRRGWTGYVEKDTAGQTNIYSVE PAVYIAESAISSGVAGSSADGAKSTLAINAGIALVFVAAASAVVLQVGRNSPQVKTAE YTGPALSYYINKFKPPEIIQATAPSLTESPSSVLPESSAPEVSQVEVQSALPPESSSP STNS" gene 19193099..19221288 /locus_tag="TCM_044750" /note="dbxref CacaoGD:Thecc1EG044750" mRNA join(19193099..19193260,19193367..19193463, 19193561..19193682,19196928..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198303..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210692, 19210762..19210901,19211027..19211117,19213802..19213926, 19214012..19214147,19214257..19214387,19215568..19215693, 19215797..19215852,19216715..19216785,19217454..19217538, 19217631..19217734,19218373..19218501,19219599..19219707, 19219885..19220428,19220921..19221288) /locus_tag="TCM_044750" /product="DNA-directed RNA polymerase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29686.m000857.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024705t1" /inference="similar to AA sequence:ricco:29686.m000857" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7677t3" mRNA join(19193099..19193260,19193367..19193463, 19193561..19193682,19196928..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198318..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210692, 19210762..19210901,19211027..19211117,19213802..19213926, 19214012..19214147,19214257..19214387,19215568..19215693, 19215797..19215852,19216715..19216785,19217454..19217538, 19217631..19217734,19218373..19218501,19219599..19220428, 19220921..19221288) /locus_tag="TCM_044750" /product="DNA-directed RNA polymerase isoform 3" /inference="alignment:exonerate- protein:2:ricco:29686.m000857.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024705t1" /inference="similar to AA sequence:ricco:29686.m000857" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b043177t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7677t3" mRNA join(19193116..19193260,19193367..19193463, 19193561..19193682,19196928..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198303..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210692, 19210762..19210901,19211027..19211117,19213802..19213926, 19214012..19214147,19214257..19214387,19215568..19215693, 19215797..19215852,19216710..19216785,19217454..19217539, 19217631..19217733,19218372..19218501,19219599..19219865) /locus_tag="TCM_044750" /product="DNA-directed RNA polymerase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g00980.1" /inference="alignment:exonerate- protein:2:ricco:29686.m000857.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s00530.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5442t2; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9803t10; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7677t3" mRNA join(19193181..19193260,19193367..19193463, 19193561..19193682,19196928..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198303..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210901, 19211027..19211117,19213802..19213926,19214012..19214147, 19214257..19214387,19215568..19215693,19215797..19215849, 19216713..19216785,19217454..19217538,19217631..19217734, 19218373..19218501,19219599..19220416) /locus_tag="TCM_044750" /product="DNA-directed RNA polymerase isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g00980.1" /inference="alignment:exonerate- protein:2:ricco:29686.m000857.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s00530.2" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9803t5; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9803t10; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7677t3" mRNA join(19193181..19193260,19193367..19193463, 19193561..19193682,19196928..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198303..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210692, 19210762..19210901,19211027..19211117,19213802..19213926, 19214012..19214147,19214257..19214387,19215568..19215693, 19215797..19215849,19216713..19216785,19217454..19217538, 19217631..19217734,19218373..19218501,19219599..19219707, 19219885..19220416) /locus_tag="TCM_044750" /product="DNA-directed RNA polymerase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g00980.1" /inference="alignment:exonerate- protein:2:ricco:29686.m000857.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s00530.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9803t4; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9803t10; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7677t3" mRNA join(19193181..19193260,19193367..19193463, 19193561..19193682,19196928..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198318..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210692, 19210762..19210901,19211027..19211117,19213802..19213926, 19214012..19214147,19214257..19214387,19215568..19215693, 19215797..19215849,19216713..19216785,19217454..19217538, 19217631..19217734,19218373..19218501,19219599..19220416) /locus_tag="TCM_044750" /product="DNA-directed RNA polymerase isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g00980.1" /inference="alignment:exonerate- protein:2:ricco:29686.m000857.2" /inference="similar to AA sequence:Phytozome:POPTR_0015s00530.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9803t1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9803t10; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7677t3" CDS join(19193214..19193260,19193367..19193463, 19193561..19193682,19196928..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198303..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210692, 19210762..19210901,19211027..19211117,19213802..19213926, 19214012..19214147,19214257..19214387,19215568..19215693, 19215797..19215852,19216715..19216785,19217454..19217538, 19217631..19217734,19218373..19218501,19219599..19219649) /locus_tag="TCM_044750" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29686.m000857; paralog of Thecc1EG024705t1" /codon_start=1 /product="DNA-directed RNA polymerase isoform 1" /protein_id="EOY19609.1" /db_xref="TAIR:AT5G45140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHS2" /translation="MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLP EFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTI NAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCC CVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINAS VTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPH YNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLAN VPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLF KTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHR KGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG LVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKH RRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIK EHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTIL GVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTR TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQK YETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVS SESLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFS SRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG RFHYGSAFGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYY QKLKHMVLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER LMISSDPFEVQVCRKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQS MNIVPRLKLSEA" CDS join(19193214..19193260,19193367..19193463, 19193561..19193682,19196928..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198318..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210692, 19210762..19210901,19211027..19211117,19213802..19213926, 19214012..19214147,19214257..19214387,19215568..19215693, 19215797..19215852,19216715..19216785,19217454..19217538, 19217631..19217734,19218373..19218501,19219599..19219649) /locus_tag="TCM_044750" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29686.m000857; paralog of Thecc1EG024705t1" /codon_start=1 /product="DNA-directed RNA polymerase isoform 3" /protein_id="EOY19611.1" /db_xref="TAIR:AT5G45140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHS2" /translation="MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLP EFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTI NAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCC CVLYGKDEAELARLGECPLDPGGYFVIKGAEKEQLSKNRIIIDADKKGNINASVTSSS EATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVL LPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRS NNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTIS EVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHRKGMTQ VLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL ALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKHRRPQH FAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMK ELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAG LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELV GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGA SDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLP DSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQ KGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG SAFGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKH MVLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISS DPFEVQVCRKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVP RLKLSEA" CDS join(19193214..19193260,19193367..19193463, 19193561..19193682,19196928..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198303..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210692, 19210762..19210901,19211027..19211117,19213802..19213926, 19214012..19214147,19214257..19214387,19215568..19215693, 19215797..19215852,19216710..19216777) /locus_tag="TCM_044750" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase isoform 4" /protein_id="EOY19612.1" /db_xref="Phytozome:POPTR_0015s00530.2" /db_xref="TAIR:AT5G45140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHS2" /translation="MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLP EFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTI NAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCC CVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINAS VTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPH YNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLAN VPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLF KTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHR KGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG LVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKH RRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIK EHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTIL GVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTR TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQK YETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVS SESLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFS SRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG RFHYGSAFGEPSGHADRVEAISETLIKHGFSYNGKDFIYSVQVLQVVHCKHIFLWDQF TTRS" CDS join(19193214..19193260,19193367..19193463, 19193561..19193682,19196928..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198303..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210901, 19211027..19211117,19213802..19213926,19214012..19214147, 19214257..19214387,19215568..19215693,19215797..19215849, 19216713..19216714) /locus_tag="TCM_044750" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase isoform 6" /protein_id="EOY19614.1" /db_xref="Phytozome:POPTR_0015s00530.2" /db_xref="TAIR:AT5G45140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHS2" /translation="MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLP EFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTI NAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCC CVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINAS VTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPH YNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLAN VPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLF KTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHR KGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG LVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKH RRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIK EHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTIL GVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTR TIELVSGLYVVDYSTPFCPVNCLLCFQVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN KSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQILDDDGIATPGE IIRPNDIYINKESSIHTRGSRVSSESLPDSAYRPARQTYKGPEGESCVVDRVALCTDR NSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHG FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADRVEAISETLIKHGFSYNGK DFIY" CDS join(19193214..19193260,19193367..19193463, 19193561..19193682,19196928..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198303..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210692, 19210762..19210901,19211027..19211117,19213802..19213926, 19214012..19214147,19214257..19214387,19215568..19215693, 19215797..19215849,19216713..19216714) /locus_tag="TCM_044750" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase isoform 2" /protein_id="EOY19610.1" /db_xref="Phytozome:POPTR_0015s00530.2" /db_xref="TAIR:AT5G45140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHS2" /translation="MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLP EFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTI NAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCC CVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINAS VTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPH YNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLAN VPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLF KTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHR KGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG LVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKH RRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIK EHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTIL GVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTR TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQK YETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVS SESLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFS SRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG RFHYGSAFGEPSGHADRVEAISETLIKHGFSYNGKDFIY" CDS join(19193214..19193260,19193367..19193463, 19193561..19193682,19196928..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198318..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210692, 19210762..19210901,19211027..19211117,19213802..19213926, 19214012..19214147,19214257..19214387,19215568..19215693, 19215797..19215849,19216713..19216714) /locus_tag="TCM_044750" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase isoform 5" /protein_id="EOY19613.1" /db_xref="Phytozome:POPTR_0015s00530.2" /db_xref="TAIR:AT5G45140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHS2" /translation="MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLP EFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTI NAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCC CVLYGKDEAELARLGECPLDPGGYFVIKGAEKEQLSKNRIIIDADKKGNINASVTSSS EATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVL LPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRS NNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTIS EVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHRKGMTQ VLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL ALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKHRRPQH FAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMK ELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAG LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELV GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGA SDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLP DSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQ KGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG SAFGEPSGHADRVEAISETLIKHGFSYNGKDFIY" mRNA join(19196932..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198303..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210901, 19211027..19211117,19213802..19213926,19214012..19214147, 19214257..19214387,19215568..19215693,19215797..19215852, 19216715..19216785,19217454..19217538,19217631..19217734, 19218373..19218501,19219599..19219707) /locus_tag="TCM_044750" /product="DNA-directed RNA polymerase isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g00980.1" /inference="alignment:exonerate- protein:2:ricco:29686.m000857.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024705t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00530.2" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc743t4; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7677t3; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9803t10" CDS join(19196959..19197020,19197190..19197262, 19197343..19197433,19197525..19197577,19198303..19198367, 19199067..19199172,19199300..19199410,19200524..19200583, 19202300..19202338,19202538..19202588,19202671..19202769, 19203473..19203532,19203635..19203727,19204553..19204657, 19204753..19204863,19205003..19205119,19206594..19206710, 19207812..19207892,19209441..19209545,19209623..19209703, 19209793..19209924,19210018..19210062,19210615..19210901, 19211027..19211117,19213802..19213926,19214012..19214147, 19214257..19214387,19215568..19215693,19215797..19215852, 19216715..19216785,19217454..19217538,19217631..19217734, 19218373..19218501,19219599..19219649) /locus_tag="TCM_044750" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG024705t1" /codon_start=1 /product="DNA-directed RNA polymerase isoform 7" /protein_id="EOY19615.1" /db_xref="Phytozome:POPTR_0015s00530.2" /db_xref="TAIR:AT5G45140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHS2" /translation="MTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLE KNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLS KNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAM GMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPAS EKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNK RLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLE RTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPS QWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELH TPNSFLVILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGG RVCRPLVIADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEG EATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMD TLLYLLVYPQRPLLTTRTIELVSGLYVVDYSTPFCPVNCLLCFQVGYDKLGAGQNATV AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPG SERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLPDSAYRPARQTYKG PEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDF PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADRV EAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGNGP RVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRKCGL LGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPRLKLSEA" mobile_element complement(19221230..19221707) /note="source:scaffold_9_CACTA_0931 163 644" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19221707..19221938 /note="source:INTACT36_F116_scaffold_6-int 2662 2877" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19221939..19222236) /note="source:scaffold_2_CACTA_0248 27 500" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19222039..19229246) /note="source:INTACT89_F140_scaffold_9-int 2052 16347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19229235..19235650 /note="source:INTACT59_F126_scaffold_9-int 7789 14261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19234160..19236121) /note="source:INTACT89_F140_scaffold_9-int 1982 3863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19235804..19236303) /note="source:scaffold_2_CACTA_0248 27 500" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19236134..19236968) /note="source:INTACT89_F140_scaffold_9-int 15437 16347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19236575..19237025 /note="source:INTACT36_F116_scaffold_6-int 3457 3885" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19237382..19238129 /note="source:CACAO_M_E49298_F73_scaffold_7 1191 1937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19238650..19238887) /note="source:CACAO_M_E59741_F73_scaffold_9 1 234" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19238889..19239968) /note="source:CACAO_M_S_E52027_F3_scaffold_5 4417 5498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19242814..19243278) /note="source:scaffold_9_CACTA_0931 407 874" /mobile_element_type="transposon:TIR/CACTA" gene complement(19244659..19245750) /locus_tag="TCM_044753" /note="dbxref CacaoGD:Thecc1EG044753" mRNA complement(join(19244659..19244881,19245147..19245210, 19245288..19245363,19245486..19245549,19245632..19245750)) /locus_tag="TCM_044753" /product="High chlorophyll fluorescence phenotype 173, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027599t4" /inference="similar to AA sequence:Phytozome:GSVIVT01029443001" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(19244717..19244881,19245147..19245210, 19245288..19245363,19245486..19245549,19245632..19245667)) /locus_tag="TCM_044753" /note="paralog of Thecc1EG027599t4" /codon_start=1 /product="High chlorophyll fluorescence phenotype 173, putative" /protein_id="EOY19616.1" /db_xref="Phytozome:GSVIVT01029443001" /db_xref="TAIR:AT1G16720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W4D6" /translation="MKIITLEQIIIMKYNGGMDAKFKYTKVIEAIFFGYVFSRCIYVK LSKKFSLLLGRTLDKYIDSSLKVYLTLWNIWCSSIKVRVTFSSFRFMKPDDSSLDPFL IHTLTICFKPRRQVLCILKIFLYHLVWKLVKV" gene 19246562..19258974 /locus_tag="TCM_044754" /note="dbxref CacaoGD:Thecc1EG044754" mRNA join(19246562..19246641,19248079..19248314, 19248461..19248544,19248741..19248872,19249122..19249928, 19250126..19250210,19250308..19250381,19250989..19252054, 19252148..19252428,19252958..19253064,19253998..19254148, 19255499..19255651,19255914..19256057,19256164..19256382, 19256622..19257275) /locus_tag="TCM_044754" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19240.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b043181t1a2; alternateUTRof:Thecc1EG044754t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5356t1" mRNA join(19246562..19246641,19248079..19248314, 19248461..19248544,19248741..19248872,19249122..19249928, 19250126..19250210,19250308..19250381,19250989..19252054, 19252148..19252428,19252958..19253064,19253998..19254148, 19255499..19255651,19255914..19256057,19256164..19256382, 19256642..19256867,19256994..19257275) /locus_tag="TCM_044754" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19240.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5356t1" CDS join(19248276..19248314,19248461..19248544, 19248741..19248872,19249122..19249928,19250126..19250210, 19250308..19250381,19250989..19252054,19252148..19252428, 19252958..19253064,19253998..19254148,19255499..19255651, 19255914..19256045) /locus_tag="TCM_044754" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19617.1" /db_xref="Phytozome:POPTR_0003s19240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX90" /translation="MGSSGFRPPQFSEELAWLPAYLQRITDTSVEPRSPSHQQFKELS CVQGEDLELLLWREESRCNSFHLFLSGEDKSPISSFPSSKDVLNFRLHLSPDSDSPYC QSQFLSTSCAQHGSDRVLQLPQVVSSGSGDQIDLIKTKIGAGGVNALPLTSIARAVEN DGPQLSNHVKACSEHSVEKVTVRNLKGIDIMDAVELSIAASETLVIHELVKSDPASEA FSTAAVLEAALQVKQARLEISEDAFDCSSEKSDEIDFLLDLDDLTMADAFEDVGLSIR GLDDQHACGSDESLVKDTPVSENCFGSENISKNAEHFSQNKSSNDPSFGLRISDFTGN SDPMLHKLGQEISHVSATVQRVGFSIVDTSVQPQADVNCSAFWNLENAGGESNASPSI ADGFRSRWFGGWAGKEEADPVQLKPKGKNIPKYFAAETSFFSESADVAPDENSVVLKC EKNRSKIASDQSIPFEGLYDQVDEGIMVSQDVRSSNLSLVDPLCSIVPCSISSENDSS ALGHKGNSEEANVGNCFGSTAVLGNENLDGESTYGTRQALPTFCGEHSVAKVRRRLTS LRTYSTVLHEHDSTLGSERLCLNQSTSLNLRHNMNGIRFSDKRNSEMSLAASSTPECT IGRDTEENKHTTVVDNPDGETTNYKQNSDKHAKDGAALQDQPSRGSSPLILHQRMRQR LQAARLLVCGSLGKANAEQAVAQKASVALSSRSSLQWIQSKCNNAFDMQFPSRKRVHF SEIEVNLQRNKNLHERQPFHQKCSVSRPSKRFKPDAEILDDKRFSTIHFRDQKSLIFQ DLKFLLTGFSRGKEKEIEGLIRKYGGVVLVDIPSPSNRGKRCSRLKFLQLPIVLCPKK LQTTKFLYACAVNSLILKVKWLTDSIAAGSALSPGKYMVLLNQPDTRFTRIGKPVRQD NYTYIFDGIGIMLHGKQLFCTKFAKVIQHGGGRVFKTLLWLLQNLDNEKISLAVIVSE GESKASRHLRHCASERKIPMMPSSWIVRSLYSGKLLPFVEKKDTTLHAAMGTDFLVSD DWSQEI" CDS join(19248276..19248314,19248461..19248544, 19248741..19248872,19249122..19249928,19250126..19250210, 19250308..19250381,19250989..19252054,19252148..19252428, 19252958..19253064,19253998..19254148,19255499..19255651, 19255914..19256045) /locus_tag="TCM_044754" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19618.1" /db_xref="Phytozome:POPTR_0003s19240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX90" /translation="MGSSGFRPPQFSEELAWLPAYLQRITDTSVEPRSPSHQQFKELS CVQGEDLELLLWREESRCNSFHLFLSGEDKSPISSFPSSKDVLNFRLHLSPDSDSPYC QSQFLSTSCAQHGSDRVLQLPQVVSSGSGDQIDLIKTKIGAGGVNALPLTSIARAVEN DGPQLSNHVKACSEHSVEKVTVRNLKGIDIMDAVELSIAASETLVIHELVKSDPASEA FSTAAVLEAALQVKQARLEISEDAFDCSSEKSDEIDFLLDLDDLTMADAFEDVGLSIR GLDDQHACGSDESLVKDTPVSENCFGSENISKNAEHFSQNKSSNDPSFGLRISDFTGN SDPMLHKLGQEISHVSATVQRVGFSIVDTSVQPQADVNCSAFWNLENAGGESNASPSI ADGFRSRWFGGWAGKEEADPVQLKPKGKNIPKYFAAETSFFSESADVAPDENSVVLKC EKNRSKIASDQSIPFEGLYDQVDEGIMVSQDVRSSNLSLVDPLCSIVPCSISSENDSS ALGHKGNSEEANVGNCFGSTAVLGNENLDGESTYGTRQALPTFCGEHSVAKVRRRLTS LRTYSTVLHEHDSTLGSERLCLNQSTSLNLRHNMNGIRFSDKRNSEMSLAASSTPECT IGRDTEENKHTTVVDNPDGETTNYKQNSDKHAKDGAALQDQPSRGSSPLILHQRMRQR LQAARLLVCGSLGKANAEQAVAQKASVALSSRSSLQWIQSKCNNAFDMQFPSRKRVHF SEIEVNLQRNKNLHERQPFHQKCSVSRPSKRFKPDAEILDDKRFSTIHFRDQKSLIFQ DLKFLLTGFSRGKEKEIEGLIRKYGGVVLVDIPSPSNRGKRCSRLKFLQLPIVLCPKK LQTTKFLYACAVNSLILKVKWLTDSIAAGSALSPGKYMVLLNQPDTRFTRIGKPVRQD NYTYIFDGIGIMLHGKQLFCTKFAKVIQHGGGRVFKTLLWLLQNLDNEKISLAVIVSE GESKASRHLRHCASERKIPMMPSSWIVRSLYSGKLLPFVEKKDTTLHAAMGTDFLVSD DWSQEI" mRNA join(19249774..19249928,19250126..19250210, 19250308..19250381,19250989..19252054,19252148..19252428, 19252958..19253064,19253998..19254148,19255499..19255651, 19255914..19256057,19256164..19256259,19256815..19256867, 19256994..19257153) /locus_tag="TCM_044754" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010889" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19240.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19240.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9904t4_C1; alternateUTRof:Thecc1EG044754t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5356t1" mRNA join(19249774..19249928,19250126..19250210, 19250308..19250381,19250989..19252054,19252148..19252428, 19252958..19253064,19253998..19254148,19255499..19255651, 19255914..19256057,19256164..19256867) /locus_tag="TCM_044754" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010889" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19240.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19240.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8547t7; alternateUTRof:Thecc1EG044754t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5356t1" mRNA join(19249794..19249928,19250126..19250210, 19250308..19250381,19250989..19252054,19252148..19252428, 19252958..19253064,19253998..19254148,19255499..19255651, 19255914..19256057,19256164..19256382,19256642..19256867, 19258613..19258974) /locus_tag="TCM_044754" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010889" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19240.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19240.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5356t2; alternateUTRof:Thecc1EG044754t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5356t1" mRNA join(19249794..19249928,19250126..19250210, 19250308..19250381,19250989..19252054,19252148..19252428, 19252958..19253064,19253998..19254148,19255499..19255651, 19255914..19256057,19256164..19256382,19256622..19256867, 19256994..19257153) /locus_tag="TCM_044754" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010889" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19240.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19240.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5356t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5356t1" CDS join(19249878..19249928,19250126..19250210, 19250308..19250381,19250989..19252054,19252148..19252428, 19252958..19253064,19253998..19254148,19255499..19255651, 19255914..19256045) /locus_tag="TCM_044754" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY19619.1" /db_xref="Phytozome:POPTR_0003s19240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX90" /translation="MLHKLGQEISHVSATVQRVGFSIVDTSVQPQADVNCSAFWNLEN AGGESNASPSIADGFRSRWFGGWAGKEEADPVQLKPKGKNIPKYFAAETSFFSESADV APDENSVVLKCEKNRSKIASDQSIPFEGLYDQVDEGIMVSQDVRSSNLSLVDPLCSIV PCSISSENDSSALGHKGNSEEANVGNCFGSTAVLGNENLDGESTYGTRQALPTFCGEH SVAKVRRRLTSLRTYSTVLHEHDSTLGSERLCLNQSTSLNLRHNMNGIRFSDKRNSEM SLAASSTPECTIGRDTEENKHTTVVDNPDGETTNYKQNSDKHAKDGAALQDQPSRGSS PLILHQRMRQRLQAARLLVCGSLGKANAEQAVAQKASVALSSRSSLQWIQSKCNNAFD MQFPSRKRVHFSEIEVNLQRNKNLHERQPFHQKCSVSRPSKRFKPDAEILDDKRFSTI HFRDQKSLIFQDLKFLLTGFSRGKEKEIEGLIRKYGGVVLVDIPSPSNRGKRCSRLKF LQLPIVLCPKKLQTTKFLYACAVNSLILKVKWLTDSIAAGSALSPGKYMVLLNQPDTR FTRIGKPVRQDNYTYIFDGIGIMLHGKQLFCTKFAKVIQHGGGRVFKTLLWLLQNLDN EKISLAVIVSEGESKASRHLRHCASERKIPMMPSSWIVRSLYSGKLLPFVEKKDTTLH AAMGTDFLVSDDWSQEI" CDS join(19249878..19249928,19250126..19250210, 19250308..19250381,19250989..19252054,19252148..19252428, 19252958..19253064,19253998..19254148,19255499..19255651, 19255914..19256045) /locus_tag="TCM_044754" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY19620.1" /db_xref="Phytozome:POPTR_0003s19240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX90" /translation="MLHKLGQEISHVSATVQRVGFSIVDTSVQPQADVNCSAFWNLEN AGGESNASPSIADGFRSRWFGGWAGKEEADPVQLKPKGKNIPKYFAAETSFFSESADV APDENSVVLKCEKNRSKIASDQSIPFEGLYDQVDEGIMVSQDVRSSNLSLVDPLCSIV PCSISSENDSSALGHKGNSEEANVGNCFGSTAVLGNENLDGESTYGTRQALPTFCGEH SVAKVRRRLTSLRTYSTVLHEHDSTLGSERLCLNQSTSLNLRHNMNGIRFSDKRNSEM SLAASSTPECTIGRDTEENKHTTVVDNPDGETTNYKQNSDKHAKDGAALQDQPSRGSS PLILHQRMRQRLQAARLLVCGSLGKANAEQAVAQKASVALSSRSSLQWIQSKCNNAFD MQFPSRKRVHFSEIEVNLQRNKNLHERQPFHQKCSVSRPSKRFKPDAEILDDKRFSTI HFRDQKSLIFQDLKFLLTGFSRGKEKEIEGLIRKYGGVVLVDIPSPSNRGKRCSRLKF LQLPIVLCPKKLQTTKFLYACAVNSLILKVKWLTDSIAAGSALSPGKYMVLLNQPDTR FTRIGKPVRQDNYTYIFDGIGIMLHGKQLFCTKFAKVIQHGGGRVFKTLLWLLQNLDN EKISLAVIVSEGESKASRHLRHCASERKIPMMPSSWIVRSLYSGKLLPFVEKKDTTLH AAMGTDFLVSDDWSQEI" CDS join(19249878..19249928,19250126..19250210, 19250308..19250381,19250989..19252054,19252148..19252428, 19252958..19253064,19253998..19254148,19255499..19255651, 19255914..19256045) /locus_tag="TCM_044754" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY19621.1" /db_xref="Phytozome:POPTR_0003s19240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX90" /translation="MLHKLGQEISHVSATVQRVGFSIVDTSVQPQADVNCSAFWNLEN AGGESNASPSIADGFRSRWFGGWAGKEEADPVQLKPKGKNIPKYFAAETSFFSESADV APDENSVVLKCEKNRSKIASDQSIPFEGLYDQVDEGIMVSQDVRSSNLSLVDPLCSIV PCSISSENDSSALGHKGNSEEANVGNCFGSTAVLGNENLDGESTYGTRQALPTFCGEH SVAKVRRRLTSLRTYSTVLHEHDSTLGSERLCLNQSTSLNLRHNMNGIRFSDKRNSEM SLAASSTPECTIGRDTEENKHTTVVDNPDGETTNYKQNSDKHAKDGAALQDQPSRGSS PLILHQRMRQRLQAARLLVCGSLGKANAEQAVAQKASVALSSRSSLQWIQSKCNNAFD MQFPSRKRVHFSEIEVNLQRNKNLHERQPFHQKCSVSRPSKRFKPDAEILDDKRFSTI HFRDQKSLIFQDLKFLLTGFSRGKEKEIEGLIRKYGGVVLVDIPSPSNRGKRCSRLKF LQLPIVLCPKKLQTTKFLYACAVNSLILKVKWLTDSIAAGSALSPGKYMVLLNQPDTR FTRIGKPVRQDNYTYIFDGIGIMLHGKQLFCTKFAKVIQHGGGRVFKTLLWLLQNLDN EKISLAVIVSEGESKASRHLRHCASERKIPMMPSSWIVRSLYSGKLLPFVEKKDTTLH AAMGTDFLVSDDWSQEI" CDS join(19249878..19249928,19250126..19250210, 19250308..19250381,19250989..19252054,19252148..19252428, 19252958..19253064,19253998..19254148,19255499..19255651, 19255914..19256045) /locus_tag="TCM_044754" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY19622.1" /db_xref="Phytozome:POPTR_0003s19240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX90" /translation="MLHKLGQEISHVSATVQRVGFSIVDTSVQPQADVNCSAFWNLEN AGGESNASPSIADGFRSRWFGGWAGKEEADPVQLKPKGKNIPKYFAAETSFFSESADV APDENSVVLKCEKNRSKIASDQSIPFEGLYDQVDEGIMVSQDVRSSNLSLVDPLCSIV PCSISSENDSSALGHKGNSEEANVGNCFGSTAVLGNENLDGESTYGTRQALPTFCGEH SVAKVRRRLTSLRTYSTVLHEHDSTLGSERLCLNQSTSLNLRHNMNGIRFSDKRNSEM SLAASSTPECTIGRDTEENKHTTVVDNPDGETTNYKQNSDKHAKDGAALQDQPSRGSS PLILHQRMRQRLQAARLLVCGSLGKANAEQAVAQKASVALSSRSSLQWIQSKCNNAFD MQFPSRKRVHFSEIEVNLQRNKNLHERQPFHQKCSVSRPSKRFKPDAEILDDKRFSTI HFRDQKSLIFQDLKFLLTGFSRGKEKEIEGLIRKYGGVVLVDIPSPSNRGKRCSRLKF LQLPIVLCPKKLQTTKFLYACAVNSLILKVKWLTDSIAAGSALSPGKYMVLLNQPDTR FTRIGKPVRQDNYTYIFDGIGIMLHGKQLFCTKFAKVIQHGGGRVFKTLLWLLQNLDN EKISLAVIVSEGESKASRHLRHCASERKIPMMPSSWIVRSLYSGKLLPFVEKKDTTLH AAMGTDFLVSDDWSQEI" gene 19263202..19264722 /locus_tag="TCM_044756" /note="dbxref CacaoGD:Thecc1EG044756" mRNA join(19263202..19263354,19263575..19264722) /locus_tag="TCM_044756" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5352t1" CDS 19263798..19264091 /locus_tag="TCM_044756" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19623.1" /translation="MQYCSTSMQLQQNSKLEKTECEVGWHQKRELNIYQDHHQAENVV SLSTLYLAKEFAKLLPSLKMRLKDTVPRETHRESISLKMFHLSQGRCVLYLKN" mobile_element 19264096..19270462 /note="source:INTACT512_F236_scaffold_5-int 1 6250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19270509..19273498 /note="source:CACAO_M_E199_F328_scaffold_1 1 2982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19273457..19273504 /note="source:CACAO_M_E14081_F316_scaffold_3 13580 13626" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19273495..19274619 /note="source:INTACT512_F236_scaffold_5-int 6246 7379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19274882..19275151) /note="source:CACAO_M_E14081_F316_scaffold_3 15243 15528" /mobile_element_type="retrotransposon:LTR/Copia" gene 19275492..19284892 /locus_tag="TCM_044758" /note="dbxref CacaoGD:Thecc1EG044758" mRNA join(19275492..19275622,19283486..19284892) /locus_tag="TCM_044758" /product="Sulfotransferase 2A, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044787t1" /inference="similar to AA sequence:ricco:30040.m000261" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage" mobile_element complement(19281120..19281165) /note="source:scaffold_3_CACTA_0382 1858 1903" /mobile_element_type="transposon:TIR/CACTA" CDS 19283578..19284549 /locus_tag="TCM_044758" /note="dbxref ricco:30040.m000261; paralog of Thecc1EG044787t1" /codon_start=1 /product="Sulfotransferase 2A, putative" /protein_id="EOY19624.1" /db_xref="TAIR:AT5G07010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940P4" /translation="MEGEQSHENHPPSMVAEGDDHHIITKKQGPTFCQFQGFWCRSSL VPNIISFQKHFQALDDDIIVASKPKAGTTWLKALVFTIVNRARFSLSNSPLNLTNPHK LIPYLEITVYGQDHIPDLTSIPSPRLFATHLPFAVLAESSIKQAKSRIVYVTRNPLDI IVSFWHFIRGIECPDWPLVECFEMFCRGEEGFGPFWDHALGYWKESSEKPHKVLFLKY EHLKENPIQQIKRIAEFIGFPFSVEEERAGAIEEIKTFCSFSNMKDLVGNMTGTMGRL HIQPKELFRKGEVGDHINYLSPSAIERFCKIVEEKLSGSGLAYDLPC" mobile_element complement(19286234..19289798) /note="source:CACAO_M_S_E17777_F2_scaffold_3 8471 11913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19289871..19291331 /note="source:CACAO_M_S_E51565_F2_scaffold_4 11311 12785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19291313..19292438 /note="source:INTACT721_F2_scaffold_7-int 2903 3994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19295112..19296796) /note="source:CACAO_M_S_E121733_F60_scaffold_10 1 1685" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19296740..19298110) /locus_tag="TCM_044760" /note="dbxref CacaoGD:Thecc1EG044760" mRNA complement(join(19296740..19297231,19297608..19298110)) /locus_tag="TCM_044760" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044758t1" /inference="similar to AA sequence:ricco:29686.m000854" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(join(19296960..19297231,19297608..19297947)) /locus_tag="TCM_044760" /note="dbxref ricco:29686.m000854; paralog of Thecc1EG044758t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19625.1" /translation="MEGEQSHENHPPSSIVEGDDDVIVASKPKAGTIWLKALAFSIVN RTRYWLSNNLLNSAISYNFVPFVEITLYGQDQIPDLTSIPPPRLFATHLSYSVLPESM KQGNSQIVYVTPRQQQHPFAAPHPRLLVNLPKRPPPEAKEVFKTKPAPHYKALSITTA TGSTVQPPIKGNPTAPKEEKPPAATKTTSEAIPNKRSQPKKQP" gene complement(19301028..19304491) /locus_tag="TCM_044761" /note="dbxref CacaoGD:Thecc1EG044761" mRNA complement(join(19301028..19302212,19303883..19304491)) /locus_tag="TCM_044761" /product="Sulfotransferase 2A, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044758t1" /inference="similar to AA sequence:Phytozome:GSVIVT01036599001" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS complement(join(19301550..19302212,19303883..19303966)) /locus_tag="TCM_044761" /note="paralog of Thecc1EG044758t1" /codon_start=1 /product="Sulfotransferase 2A, putative" /protein_id="EOY19626.1" /db_xref="Phytozome:GSVIVT01036599001" /db_xref="TAIR:AT5G07010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HFY6" /translation="MSVLLGRRKTTSLFDINVIFGGQVGQINLKAPVLAIVNHTRFSL SNSPLNWANPHNLVPFLELTLYAGDGIPDLTSIPCRRLFATHLPYAALAESIKQGKSR IVYITRNPLDVIVSFWHFNISIPGLADWPLEECFEMFCRGEELFGPFRDHALGYWKES LEKAHRVLFLRYEDMKEDPILQIKRIAEFRALPFSDEEETAGVIEEIAKFCSLSNLKD LKGNKIGKFQGFQIEYKFLFRKGEVGDHVN" gene complement(19307100..19309141) /locus_tag="TCM_044762" /note="dbxref CacaoGD:Thecc1EG044762" mRNA complement(19307100..19309141) /locus_tag="TCM_044762" /product="Sulfotransferase 2B, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s13470.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044758t1" /inference="similar to AA sequence:ricco:30040.m000261" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc9887t1" CDS complement(19307864..19308577) /locus_tag="TCM_044762" /note="dbxref ricco:30040.m000261; paralog of Thecc1EG044758t1" /codon_start=1 /product="Sulfotransferase 2B, putative" /protein_id="EOY19627.1" /db_xref="TAIR:AT5G07000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TXM0" /translation="MAEENSPVSQHSEKHAPALTHFQGHWCLSQLVPNVISFQKHFQA LDDDIILASTPKAGTTWLKALAFTIMNRNRFTLSNSPLNSSNPHDLVPYFEMMLYKDG QIPDFAGVSSPRLFATHLPYQALAESIKQSNSRIVYIARNPLDVIVSLWHFITSEPEC ADWSLEECFEQFCRGEDAYGPFWDHVLRYWKESLEKPNKVLFLKYEDMKENPIPHIRK MAEFTGFPFSMEEEKAGVI" mobile_element complement(19308682..19314406) /note="source:INTACT648_F285_scaffold_10-int 1 5725" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19321679..19325921) /locus_tag="TCM_044764" /note="dbxref CacaoGD:Thecc1EG044764" mRNA complement(join(19321679..19321761,19321922..19322445, 19322721..19322943,19323717..19323816,19324096..19324200, 19324309..19324421,19324673..19324745,19324921..19324988, 19325236..19325270,19325887..19325921)) /locus_tag="TCM_044764" /product="Ca2+ antiporter/cation exchanger, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g026070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040977t1" /inference="similar to AA sequence:frave:gene01698" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc608t5" CDS complement(join(19323738..19323816,19324096..19324200, 19324309..19324421,19324673..19324745,19324921..19324988, 19325236..19325256)) /locus_tag="TCM_044764" /note="dbxref frave:gene01698; paralog of Thecc1EG040977t1" /codon_start=1 /product="Ca2+ antiporter/cation exchanger, putative" /protein_id="EOY19628.1" /db_xref="TAIR:AT3G55600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IN18" /translation="MGMSKTEYVATLRELLGHLAEERTPEGLPRVSKAVASDYSENIE DIASKLTATLPNIKVPQEAVTRNSFEQSPKSDAENHKPSSPGLRRRAVPTSSIKDRMQ DRTEAYTSAPVKLDAAAEAHIQKHKKLQEDLTDEMVGLARQLKESSLMMS" mobile_element complement(19329880..19332808) /note="source:CACAO_M_E71380_F15_scaffold_10 1 2929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19332665..19332830 /note="source:INTACT642F_F365_scaffold_5-int 15900 16066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19337641..19340986) /note="source:CACAO_M_E71378_F82_scaffold_10 1 3346" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19345822..19347144) /locus_tag="TCM_044767" /note="dbxref CacaoGD:Thecc1EG044767" mRNA complement(join(19345822..19346900,19346985..19347144)) /locus_tag="TCM_044767" /product="Sulfotransferase 2A, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007541001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024317t1" /inference="similar to AA sequence:ricco:29686.m000854" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00907t00002" CDS complement(join(19346075..19346900,19346985..19347124)) /locus_tag="TCM_044767" /note="dbxref ricco:29686.m000854; paralog of Thecc1EG024317t1" /codon_start=1 /product="Sulfotransferase 2A, putative" /protein_id="EOY19629.1" /db_xref="TAIR:AT5G07010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TXM0" /translation="MGSFRTTPSPSPQVTEESDQEIEALLLSLPKGKGWLAGGLFLYQ GCWPKSGTTWLKALIFSIVNRSRYTNATSPLLTTNPHELVPFIEFTLYGEKELPDLTS IQSPRLFSTHIPYMSLPVSIKECNNTRIVYICRNPFDVVVSSWHFAARARNSLERSME DLVDNFCKGIEAFGSFWDHVLGYWKESLENPHKVLFLKYEDLKEDTNFHLKRLAEFIG FPFSMEEEKEGVIEEISKLFSLSSLKDLEVNKTGKFMPNFENKCYFRNGEVGDWVNHL TPSMVERLEKVIEEKLEGSGLSFQASTGLISSSSLDPNMPHIQNK" mobile_element 19350845..19350951 /note="source:CACAO_M_S_E119615_F3_scaffold_9 18311 18417" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19351869..19352950 /locus_tag="TCM_044768" /note="dbxref CacaoGD:Thecc1EG044768" mRNA 19351869..19352950 /locus_tag="TCM_044768" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.59 coverage" CDS 19352345..19352701 /locus_tag="TCM_044768" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19630.1" /translation="MFSLINSLMHLLNHCQRPYFTFFYRRLVSPMVLPSCGPYKKVIL AILTSTSTSITIDPLCTSKSIFVIKAILATTSLLVYAFVDILATTKFIKQYNNKSEHL THNTQTRSYNDQITTT" mobile_element complement(19359353..19364637) /note="source:CACAO_M_E69946_F329_scaffold_9 1 5353" /mobile_element_type="retrotransposon:LTR/Copia" gene 19365710..19367110 /locus_tag="TCM_044771" /note="dbxref CacaoGD:Thecc1EG044771" mRNA 19365710..19367110 /locus_tag="TCM_044771" /product="Sulfotransferase 2A" /inference="alignment:exonerate- protein:2:ricco:35683.m000014" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024317t1" /inference="similar to AA sequence:ricco:35683.m000014" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09558t00001" CDS 19365809..19366858 /locus_tag="TCM_044771" /note="dbxref ricco:35683.m000014; paralog of Thecc1EG024317t1" /codon_start=1 /product="Sulfotransferase 2A" /protein_id="EOY19631.1" /db_xref="TAIR:AT5G07010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940P4" /translation="MPLSTCTTTSMVIPHFTKNPKIGVVGKEEEENLSNECKGLIHSL PKEKGWRTPFIYLFQGFWCQPKEIQAIISFQKHFQARDSDVILATIPKSGTTWIKALT FAIMNRKRFTTSSKNHPLLTSNPHDLVPFFEYKLYANNQIPDLSNLPKPRLFGTHVPF ASLQESIKSSSCRIIYVCRNPFDTFISSWHYINKVRPESLPPFPLEEAFNLYCKGVVG FGPFWEHMLGYWKESTERPEKVLFMKYEDMKEDTVSHLKMLANFLGVPFSIEEEEEGM IKDIAKLCSFENLKDLEVNKCGKSIKNFENKHLFRKGAVGDWVNYLSPSMVEQLSKVI EEKLGDSGLKFNVFS" mobile_element complement(19370092..19373082) /note="source:CACAO_M_E71377_F143_scaffold_10 1 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19379539..19381517) /locus_tag="TCM_044773" /note="dbxref CacaoGD:Thecc1EG044773" mRNA complement(join(19379539..19379993,19380165..19380562, 19380989..19381517)) /locus_tag="TCM_044773" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(19379832..19379993,19380165..19380562, 19380989..19381448)) /locus_tag="TCM_044773" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19632.1" /translation="MEKGKTHKEFRNGERHCSQLSWGHFDNDVNWRQLKSYFDEFGVV VDVFFLQLKRPFESKYAFMLYRETRELARAIYLGNGKMFYGMRFRVVEAKSPRSTKNT RLGDEDHGRKESYKKKKRVRSYKEILLTGRPKYDRNNREGEVGKSEIGNANDRDTVEK WRFNQVMIFVKVKSLRNIRTYIYLTDNGREHFVRATKVDIMQSESRLRSSKLVDGSLL GDMVEDWAEKEFLEKVMEELKGLSLKDDWKSFKRSVHVGLRFEIVTKQTRTTNGNFRF DEANSDYEDSDKELKEDMEKKNELGSLNAEGNPNSFERINSGVEENSKRPVEELDISK GSIKK" mobile_element complement(19383189..19383299) /note="source:scaffold_5_CACTA_0596 1744 1844" /mobile_element_type="transposon:TIR/CACTA" gene complement(19387073..19389182) /locus_tag="TCM_044774" /note="dbxref CacaoGD:Thecc1EG044774" mRNA complement(join(19387073..19388360,19388696..19389182)) /locus_tag="TCM_044774" /product="NADPH-dependent diflavin oxidoreductase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001237t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19310.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5416t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5414t1" CDS complement(19387608..19388351) /locus_tag="TCM_044774" /note="paralog of Thecc1EG001237t1" /codon_start=1 /product="NADPH-dependent diflavin oxidoreductase 1" /protein_id="EOY19633.1" /db_xref="Phytozome:POPTR_0003s19310.1" /db_xref="TAIR:AT5G06990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SVG4" /translation="MAAQSIPSPPPHQSQSSPPTPASMQFESRPAISLQQPSNKKGSS KSSKLFKRFRSVFRSFPIITPMCKIPVTLHGNRPQDNHIHGGTRMTGTLFGYRKARVN LAIQENPRCLPILVLELAITTGKLLQDMGLGLVRIALECEKRPTEKTKILDEPIWTLF CNGKKSGYGVKREPTDEDLMVMQTLHPVSMGAGVIPSEAKENPDGELTYMRANFERVI NSRDSETYYMMNPDGNSGPELSIFFVRIG" gene complement(19388560..19396163) /locus_tag="TCM_044775" /note="dbxref CacaoGD:Thecc1EG044775" mRNA complement(join(19388560..19388637,19390265..19390925, 19391376..19391524,19391615..19391731,19392701..19392908, 19393628..19393930,19394187..19394262,19394381..19394771, 19395568..19396061)) /locus_tag="TCM_044775" /product="MATH and LRR domain-containing protein PFE0570w, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21503" /inference="similar to AA sequence:Phytozome:POPTR_0001s06910.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc482t4" mRNA complement(join(19390312..19390925,19391376..19391524, 19391615..19391731,19393657..19393930,19394389..19394771, 19395698..19396163)) /locus_tag="TCM_044775" /product="MATH and LRR domain-containing protein PFE0570w, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene21503" /inference="similar to AA sequence:Phytozome:POPTR_0001s06910.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b043205t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc482t4" CDS complement(join(19390646..19390925,19391376..19391524, 19391615..19391731,19392701..19392908,19393628..19393930, 19394187..19394262,19394381..19394771,19395568..19395651)) /locus_tag="TCM_044775" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="MATH and LRR domain-containing protein PFE0570w, putative isoform 1" /protein_id="EOY19634.1" /db_xref="Phytozome:POPTR_0001s06910.1" /translation="MFLTMLVISLMGKKEFFLEGERCEIFYSIKAQHMDWCFGNGIED LVVPMDQELADRLPSPESWSKWGYYAPGNFESSNKCFVVDENLTCEELKFNGRFCNGT EFETSADAKDPSSFPSVCGGLSEESLNQAPLSYPQPDYELDDFGRFQQMDDIFLYKRF KSIGQLFYKNYLFIIEIGSRHHQWSSLLEDLLGSEDLQKSVCFSPEDQCGRVPADYLL TDVSLDSQTISKNEHGMGSAKYLKTHAFSPSMTLEKEIPALRFKPRKSGLKNSPSVKV RFSTCRFIGKNKFQKFFTSDETSFVAYKSLLRSPVPATHLANIWHKNQTSSKPCQIYH HRRLFSCQSFFKESFIRISYAPLAKILAPPERNSETGFVSEGISLEESVLQELEMVTV QLSNKTRICFRDAFYRLAKNSKQNPVVINQHGNVCVRTHAPMWIVSEEKMRSGRKETT ESETNSIDRAIANLTFNNMETNVRDFPIATPAKSKQHAIRVTGQKNNSSNQSGIHYFP RSSVASTDAEVPFLVHKRSQMRMAGHE" CDS complement(join(19390646..19390925,19391376..19391524, 19391615..19391731,19393657..19393930,19394389..19394756)) /locus_tag="TCM_044775" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="MATH and LRR domain-containing protein PFE0570w, putative isoform 2" /protein_id="EOY19635.1" /db_xref="Phytozome:POPTR_0001s06910.1" /db_xref="TAIR:AT5G06980.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX84" /translation="MDWCFGNGIEDLVVPMDQELADRLPSPESWSKWGYYAPGNFESS NKCFVVDENLTCEELKFNGRFCNGTEFETSADAKDPSSFPSVCGGLSEESLNQAPLSY PQPDYELDDFGRFQQMDDIFLSSLLEDLLGSEDLQKSVCFSPEDQCGRVPADYLLTDV SLDSQTISKNEHGMGSAKYLKTHAFSPSMTLEKEIPALRFKPRKSGLKNSPSVKAPLA KILAPPERNSETGFVSEGISLEESVLQELEMVTVQLSNKTRICFRDAFYRLAKNSKQN PVVINQHGNVCVRTHAPMWIVSEEKMRSGRKETTESETNSIDRAIANLTFNNMETNVR DFPIATPAKSKQHAIRVTGQKNNSSNQSGIHYFPRSSVASTDAEVPFLVHKRSQMRMA GHE" gene complement(19397966..19400077) /locus_tag="TCM_044777" /note="dbxref CacaoGD:Thecc1EG044777" mRNA complement(join(19397966..19398463,19398875..19400077)) /locus_tag="TCM_044777" /product="RNA polymerase II ctd phosphatase-like protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g025580.1.3" /inference="similar to AA sequence:Phytozome:Glyma17g08260.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5420t1" CDS complement(join(19398462..19398463,19398875..19400060)) /locus_tag="TCM_044777" /codon_start=1 /product="RNA polymerase II ctd phosphatase-like protein" /protein_id="EOY19636.1" /db_xref="Phytozome:Glyma17g08260.1" /db_xref="TAIR:AT5G58003.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SJP1" /translation="MMKVDPMTVEDVAANLEPVLSFKEGGVRELIQRLQCSSKRGHGV LPDNTLVLERSCEHPAVVNGVCNDCCQTIEEDGNYGLDFSYLHMGLRLSRGEIDRLCC LETERLFSQKKLHLVLDIDNTLIHSFRSEAFSKLGVPKDDMQEVDGIFVKLRPLVSDF LERASTMFEMHLYTLGSRSYAKKMAKILDPQDKYFDHRIISRDESPGLVKTLDLVLGM ESSILILDDNDEVWPNHERNLILMKEFLFTGKKTDENEMNTPLNDILKALSAIHTAFF DDNIQATFRDRDVRELAASVRSTVLKGCNLYVSNVKYSGILRLIAKELGATCSKELNH SVTHLVSCYKGTEDFNRAVREEKYLVRPRWVKDAYFLWKRPAEENFPIKKSSKAILKA IIA" gene complement(19404100..19406624) /locus_tag="TCM_044778" /note="dbxref CacaoGD:Thecc1EG044778" mRNA complement(join(19404100..19404124,19405934..19406022, 19406113..19406624)) /locus_tag="TCM_044778" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc6248t2_C2" CDS complement(join(19406017..19406022,19406113..19406427)) /locus_tag="TCM_044778" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19637.1" /translation="MNLCYLSIIITAPSQLLPKTLRPSSSASSSPFLTWTQICDSCNM LSGQQRIAEATTRFGSRDGVWTRVQPNLFKAFQPATFQVWLIREMKGKNSGNKINSEL DKPS" gene 19406052..19422057 /locus_tag="TCM_044779" /note="dbxref CacaoGD:Thecc1EG044779" mRNA join(19406052..19406061,19408891..19409365, 19409471..19409528,19409665..19409748,19410414..19410488, 19411565..19411658,19412994..19413139,19413303..19413374, 19414472..19414544,19414628..19414693,19414799..19414845, 19415294..19415365,19415516..19415641,19415720..19415785, 19415886..19415924,19417276..19417392,19417488..19417570, 19418600..19418666,19419911..19419982,19420135..19420185, 19420997..19421056,19421133..19421282,19421566..19422057) /locus_tag="TCM_044779" /product="Nuclear matrix protein-related isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036611001" /inference="similar to AA sequence:Phytozome:POPTR_0001s06900.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5521t4" mRNA join(19409283..19409365,19409471..19409528, 19409665..19409748,19410414..19410488,19411565..19411658, 19412994..19413139,19413303..19413374,19414472..19414544, 19414628..19414693,19414799..19414845,19415294..19415365, 19415516..19415641,19415720..19415785,19415886..19415924, 19417276..19417392,19417488..19417570,19418600..19418666, 19419911..>19419947) /locus_tag="TCM_044779" /product="Nuclear matrix protein-related isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036611001" /inference="similar to AA sequence:Phytozome:GSVIVT01036631001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07925t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5521t4; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7931t2" CDS join(19409523..19409528,19409665..19409748, 19410414..19410488,19411565..19411658,19412994..19413139, 19413303..19413374,19414472..19414544,19414628..19414693, 19414799..19414845,19415294..19415365,19415516..19415641, 19415720..19415785,19415886..19415924,19417276..19417392, 19417488..19417570,19418600..19418666,19419911..19419982, 19420135..19420185,19420997..19421056,19421133..19421282, 19421566..19421808) /locus_tag="TCM_044779" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nuclear matrix protein-related isoform 1" /protein_id="EOY19638.1" /db_xref="Phytozome:POPTR_0001s06900.1" /db_xref="TAIR:AT5G09860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H134" /translation="MMEAFRRAILQPGPPETFALKIVQEVIKPQKQTKLAQDENQLLE NMLRTLLQELVSSSVPSGEEIMQYGKSIDDESDTQGVIPRLLDFVLYLCEKEHVEGGM IFQLLEDLNEMSTMRNCKDIFRYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKA NDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPEGISVDFNFYKTFW SLQDYFCNPASLSTAPVKWQKFTSSLMVVLNTFEAQPLSEEEGADNNLEEEATTFNIK YLTSSKLMGLELKDPSFRRHILLQCLILFDYLKAPGKNDKDSSESMKEEIKSCEDRVK KLLEVTPPKGKDFLCSIEHILEREKNWVWWKRDGCPPFEKQPIEKKPVQNGAKKRRPR WRLGNKELSQLWKWADQNPNALTDPQRVRTPAITDYWKPLAEDMDESAGIEAEYHHKN NRVYCWKGLRFAARQDLEGFSKFTEHGIEGVVPLELLPPDVRSKFQGKPSDRSKRAKK EETKTSSHQVEESQIATPASEVDGEGMRADMEASAALMDADVTAGTGNNSQGGTPTPD EHQKQSPDTDVGQEAGQLEADAEVEAGIDGETDPEA" CDS join(19409523..19409528,19409665..19409748, 19410414..19410488,19411565..19411658,19412994..19413139, 19413303..19413374,19414472..19414544,19414628..19414693, 19414799..19414845,19415294..19415365,19415516..19415641, 19415720..19415785,19415886..19415924,19417276..19417392, 19417488..19417570,19418600..19418666,19419911..>19419946) /locus_tag="TCM_044779" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Nuclear matrix protein-related isoform 4" /protein_id="EOY19641.1" /db_xref="Phytozome:GSVIVT01036631001" /db_xref="TAIR:AT5G09860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H134" /translation="MMEAFRRAILQPGPPETFALKIVQEVIKPQKQTKLAQDENQLLE NMLRTLLQELVSSSVPSGEEIMQYGKSIDDESDTQGVIPRLLDFVLYLCEKEHVEGGM IFQLLEDLNEMSTMRNCKDIFRYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKA NDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPEGISVDFNFYKTFW SLQDYFCNPASLSTAPVKWQKFTSSLMVVLNTFEAQPLSEEEGADNNLEEEATTFNIK YLTSSKLMGLELKDPSFRRHILLQCLILFDYLKAPGKNDKDSSESMKEEIKSCEDRVK KLLEVTPPKGKDFLCSIEHILEREKNWVWWKRDGCPPFEKQPIEKKPVQNGAKKRRPR WRLGNKELSQLWKWADQNPNALTDPQRVRTP" mRNA join(19409746..19409748,19410414..19410488, 19411565..19411658,19411834..19411878,19412994..19413139, 19413303..19413374,19414472..19414544,19414628..19414693, 19414799..19414845,19415294..19415365,19415516..19415641, 19415720..19415785,19415886..19415924,19417276..19417392, 19417488..19417570,19418600..19418666,19419911..19419982, 19420135..19420185,19420997..19421056,19421133..19421282, 19421566..19421921) /locus_tag="TCM_044779" /product="Nuclear matrix protein-related isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036611001" /inference="similar to AA sequence:Phytozome:POPTR_0001s06900.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7931t2; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7931t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5521t4" mRNA join(19409746..19409748,19410414..19410488, 19411565..19411658,19412994..19413374,19414472..19414544, 19414628..19414693,19414799..19414845,19415294..19415365, 19415516..19415641,19415720..19415785,19415886..19415924, 19417276..19417392,19417488..19417570,19418600..19418666, 19419911..19419982,19420135..19420185,19420997..19421056, 19421133..19421282,19421566..19421921) /locus_tag="TCM_044779" /product="Nuclear matrix protein-related isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036611001" /inference="similar to AA sequence:Phytozome:POPTR_0001s06900.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7931t5; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7931t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5521t4" CDS join(19410459..19410488,19411565..19411658, 19411834..19411878,19412994..19413139,19413303..19413374, 19414472..19414544,19414628..19414693,19414799..19414845, 19415294..19415365,19415516..19415641,19415720..19415785, 19415886..19415924,19417276..19417392,19417488..19417570, 19418600..19418666,19419911..19419982,19420135..19420185, 19420997..19421056,19421133..19421282,19421566..19421808) /locus_tag="TCM_044779" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nuclear matrix protein-related isoform 2" /protein_id="EOY19639.1" /db_xref="Phytozome:POPTR_0001s06900.1" /db_xref="TAIR:AT5G09860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H134" /translation="MLRTLLQELVSSSVPSGEEIMQYGKSIDDESDTQGVIPRLLGYV RVLIAEMTTIMQNFVLYLCEKEHVEGGMIFQLLEDLNEMSTMRNCKDIFRYIESKQDI LGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGV FNTSNETKYEKDPPEGISVDFNFYKTFWSLQDYFCNPASLSTAPVKWQKFTSSLMVVL NTFEAQPLSEEEGADNNLEEEATTFNIKYLTSSKLMGLELKDPSFRRHILLQCLILFD YLKAPGKNDKDSSESMKEEIKSCEDRVKKLLEVTPPKGKDFLCSIEHILEREKNWVWW KRDGCPPFEKQPIEKKPVQNGAKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRT PAITDYWKPLAEDMDESAGIEAEYHHKNNRVYCWKGLRFAARQDLEGFSKFTEHGIEG VVPLELLPPDVRSKFQGKPSDRSKRAKKEETKTSSHQVEESQIATPASEVDGEGMRAD MEASAALMDADVTAGTGNNSQGGTPTPDEHQKQSPDTDVGQEAGQLEADAEVEAGIDG ETDPEA" mRNA join(19411629..19411661,19411837..19411878, 19412994..19413374,19414472..19414544,19414628..19414693, 19414799..19414845,19415294..19415365,19415516..19415641, 19415720..19415785,19415886..19415924,19417276..19417392, 19417488..19417570,19418600..19418666,19419911..19419982, 19420135..19420185,19420997..19421056,19421133..19421282, 19421566..19421921) /locus_tag="TCM_044779" /product="Nuclear matrix protein-related isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036611001" /inference="similar to AA sequence:Phytozome:POPTR_0001s06900.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc332t4; alternateUTRof:Thecc1EG044779t3; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7931t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5521t4" mobile_element 19412356..19412420 /note="source:CACAO_M_S_E6117_F51_scaffold_2 1129 1194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19412380..19412445 /note="source:CACAO_M_E42343_F106_scaffold_5 6721 6782" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(19413333..19413374,19414472..19414544, 19414628..19414693,19414799..19414845,19415294..19415365, 19415516..19415641,19415720..19415785,19415886..19415924, 19417276..19417392,19417488..19417570,19418600..19418666, 19419911..19419982,19420135..19420185,19420997..19421056, 19421133..19421282,19421566..19421808) /locus_tag="TCM_044779" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Nuclear matrix protein-related isoform 3" /protein_id="EOY19640.1" /db_xref="Phytozome:POPTR_0001s06900.1" /db_xref="TAIR:AT5G09860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H134" /translation="MLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKG VFNTSNETKYEKDPPEGISVDFNFYKTFWSLQDYFCNPASLSTAPVKWQKFTSSLMVV LNTFEAQPLSEEEGADNNLEEEATTFNIKYLTSSKLMGLELKDPSFRRHILLQCLILF DYLKAPGKNDKDSSESMKEEIKSCEDRVKKLLEVTPPKGKDFLCSIEHILEREKNWVW WKRDGCPPFEKQPIEKKPVQNGAKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVR TPAITDYWKPLAEDMDESAGIEAEYHHKNNRVYCWKGLRFAARQDLEGFSKFTEHGIE GVVPLELLPPDVRSKFQGKPSDRSKRAKKEETKTSSHQVEESQIATPASEVDGEGMRA DMEASAALMDADVTAGTGNNSQGGTPTPDEHQKQSPDTDVGQEAGQLEADAEVEAGID GETDPEA" CDS join(19413333..19413374,19414472..19414544, 19414628..19414693,19414799..19414845,19415294..19415365, 19415516..19415641,19415720..19415785,19415886..19415924, 19417276..19417392,19417488..19417570,19418600..19418666, 19419911..19419982,19420135..19420185,19420997..19421056, 19421133..19421282,19421566..19421808) /locus_tag="TCM_044779" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Nuclear matrix protein-related isoform 3" /protein_id="EOY19642.1" /db_xref="Phytozome:POPTR_0001s06900.1" /db_xref="TAIR:AT5G09860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H134" /translation="MLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKG VFNTSNETKYEKDPPEGISVDFNFYKTFWSLQDYFCNPASLSTAPVKWQKFTSSLMVV LNTFEAQPLSEEEGADNNLEEEATTFNIKYLTSSKLMGLELKDPSFRRHILLQCLILF DYLKAPGKNDKDSSESMKEEIKSCEDRVKKLLEVTPPKGKDFLCSIEHILEREKNWVW WKRDGCPPFEKQPIEKKPVQNGAKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVR TPAITDYWKPLAEDMDESAGIEAEYHHKNNRVYCWKGLRFAARQDLEGFSKFTEHGIE GVVPLELLPPDVRSKFQGKPSDRSKRAKKEETKTSSHQVEESQIATPASEVDGEGMRA DMEASAALMDADVTAGTGNNSQGGTPTPDEHQKQSPDTDVGQEAGQLEADAEVEAGID GETDPEA" mobile_element 19422234..19422493 /note="source:CACAO_M_E23991_F4_scaffold_4 2866 3140" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19424429..19424624) /note="source:CACAO_M_E23991_F4_scaffold_4 2940 3104" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19424620..19424690) /note="source:CACAO_M_E10997_F98_scaffold_2 722 793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19424638..19424715) /note="source:scaffold_8_CACTA_0853 3738 3811" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19424663..19424730) /note="source:CACAO_PIF_E144_scaffold_10 5986 6054" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 19424667..19434671 /locus_tag="TCM_044780" /note="dbxref CacaoGD:Thecc1EG044780" mRNA join(19424667..19425166,19425616..19425803, 19425898..19426376,19434631..19434671) /locus_tag="TCM_044780" /product="Non-intrinsic ABC protein 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s13190.1" /inference="similar to AA sequence:Phytozome:POPTR_0018s13190.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4658t1" CDS join(19424824..19425166,19425616..19425803, 19425898..19426152) /locus_tag="TCM_044780" /codon_start=1 /product="Non-intrinsic ABC protein 3" /protein_id="EOY19643.1" /db_xref="Phytozome:POPTR_0018s13190.1" /db_xref="TAIR:AT1G67940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9W0" /translation="MSAEHLLLTVDDSDHQHSNHHDRGVKFEIRGLRKVSEAGVPILN GISVDIPKGMIVGIIGPSGSGKSTMLRALNRLWEPQSNTVFLDGHDIVDLDVLGLRRK VGMLFQLPVLFQGTVADNIRYGPRLRGKKLSDEEVSKLLTLADLDSSFLSKTGGELSV GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKKKGMTVVMVSHSI KQIQRVADVVCLLVNGEIVEVLKPGELSEAKHPMAQRFLQLSS" mobile_element complement(19426502..19426615) /note="source:scaffold_4_CACTA_0506 6799 6903" /mobile_element_type="transposon:TIR/CACTA" gene 19426848..19434335 /locus_tag="TCM_044781" /note="dbxref CacaoGD:Thecc1EG044781" mRNA join(19426848..19427357,19427753..19427853, 19427963..19428064,19428154..19428296,19428387..19428483, 19428583..19428629,19429475..19429673,19429952..19430018, 19430206..19430385,19430470..19430663,19430765..19431635, 19431852..19432002,19432094..19432166,19432411..19432587, 19432672..19432797,19432875..19433019,19433137..19433249, 19433566..19433681,19433758..19434335) /locus_tag="TCM_044781" /product="Retinoblastoma-related 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035560001" /inference="similar to AA sequence:ricco:30040.m000267" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5663t2" CDS join(19427770..19427853,19427963..19428064, 19428154..19428296,19428387..19428483,19428583..19428629, 19429475..19429673,19429952..19430018,19430206..19430385, 19430470..19430663,19430765..19431635,19431852..19432002, 19432094..19432166,19432411..19432587,19432672..19432797, 19432875..19433019,19433137..19433249,19433566..19433681, 19433758..19433908) /locus_tag="TCM_044781" /note="dbxref ricco:30040.m000267" /codon_start=1 /product="Retinoblastoma-related 1" /protein_id="EOY19644.1" /db_xref="TAIR:AT3G12280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LKZ3" /translation="MEDRKPSVTTSNSSDGDAIEARFTALCKNELSLAEKTCTEAMKL FKETKNLLSSNVSIGSGTLEEAERFCFSFVLYSLKQLSEKSGENVKQGSDENGFTICQ ILRATKLNIVDFFKELPQFVVKAGPVLNIMYGEDWESRLEAKELQANFVHLSLLSKSY KRAFRELFLTSDANIDKEQSATSAPDYVSEYHRFGWLLFLALRVHAFSRFKDLVTCAN GFVSVLAILIIHVPVRFRNFKISDSPRFVKKGGKGVDLLASLCNMYDASEDDLRKTME MANKLVEDILKKKPCSASEFKTETLENIDTDGLIYFEGLMDEQSLSSSLNILEKDYDD AIRNKGELDERVFINEEDSFLGSGSLFGGAGNVTGIKRKFDSIASPSKTISSPLSPHR SPASHGNGVLGPPNAKVAATPVSTAMTTAKWLRTVICPLPSKPSAELQRFLSSCDKDV TNDVIRRAHIILEAIFPSNHERSVTGSLQGANLMDDIWMEHRRLEALKLYYRVLEAMC TAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTATMLFPTVLDRTGITAFDL SKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWDNGSSMYNSLIVARPALAAEIDR LGLLAEPMPSLDAIAMHINFSGGMPPLPSSQKHETSPGQNGDVRSPKRLCTDYRSVLV ERNSFTSPVKDRLLAFSNLKKAPLQSAFASPTRPNPGGGGETCAETGINIFFSKINKL AAVRINGMVERLQLSQQIRESVYCLFQQVLSQRTSLFFNRHIDQIILCCFYVVAKISQ LQSSLTFGEIIRNYKKQPQCKPQVFCSVFVDRLAAQRNGVTGQDHVDIITFYNKIFIP AIKPLLVEVGLTGANISTSQVPEANNSNHGPCPGSPKVAPFPSLPDMSPKKVSATHNV YVSPLRTSKMDALISHSSRSYYACVGESTRAFQSPSKDLTAINNHLNGNRKIRGALNF DDVDVGLVSDSMVASSLHLQNGSCASSSGAPLKSEQPES" mobile_element 19428968..19429066 /note="source:scaffold_6_CACTA_0706 1405 1506" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19428980..19429070) /note="source:CACAO_M_E69634_F98_scaffold_9 1995 2087" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19434717..19441164) /locus_tag="TCM_044782" /note="dbxref CacaoGD:Thecc1EG044782" mRNA complement(join(19434717..19435484,19435625..19435800, 19436608..19437200,19440752..19440836,19440945..19441164)) /locus_tag="TCM_044782" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30040.m000273" /inference="similar to AA sequence:Phytozome:GSVIVT01036640001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06522t00001" CDS complement(join(19435031..19435484,19435625..19435800, 19436608..19437200,19440752..19440773)) /locus_tag="TCM_044782" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19645.1" /db_xref="Phytozome:GSVIVT01036640001" /translation="MMALENKETMQNCEAALKCLQTKGFPYNLQCTGNSIEGLPELKD GIGVHPGGDVVEPVCSLSGEFMELPSEFYHKPTLQHEYGSWPTFYPDSHKLQPYPMNA FGSQFYHFPVDNRFHYSPFNVITHGYPYEFQLQDFQYFVVIDFEATCDKEKNPHPQEI IEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR HDKWLEKKGIKNTNFAVVTWSNWDCRVMLESECRFKKIRKPPYFNRWINLKVPFSEVF GGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHKGFKFSITNSLMWQTSD GPLTWNPIPENMAFSPHHPHKPKDQQMPLFQYHPYCFCGVKSSKGMVRKPGPKQGSVF FGCGNWTVARGARCHYFEWASP" mobile_element 19441317..19441585 /note="source:scaffold_5_CACTA_0580 4395 4708" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19442658..19442829) /note="source:scaffold_4_CACTA_0511 13663 13812" /mobile_element_type="transposon:TIR/CACTA" gene 19443619..19459833 /locus_tag="TCM_044784" /note="dbxref CacaoGD:Thecc1EG044784" mRNA join(19443619..19444171,19444252..19444504, 19444601..19444720,19446104..19446180,19446611..19446674, 19446986..19447056,19447206..19447283,19447377..19447422, 19448734..19448914,19448997..19449049,19449206..19449279, 19449410..19449527,19450236..19450323,19451293..19451408, 19452700..19452827,19452928..19453007,19453721..19453962, 19454037..19454201,19454330..19454494,19454579..19454653, 19455255..19455358,19455440..19455515,19455957..19456085, 19456195..19456335,19456905..19457117,19457517..19457771, 19458313..19458588,19458711..19458859,19458955..19459833) /locus_tag="TCM_044784" /product="DNA-directed RNA polymerase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g26190.1" /inference="similar to AA sequence:Phytozome:GSVIVT01036642001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc4t6" mRNA join(19443648..19443907,19444422..19444504, 19444601..19444720,19446104..19446180,19446611..19446674, 19446986..19447056,19447206..19447283,19447377..19447422, 19448734..19448914,19448997..19449049,19449206..19449279, 19449410..19449527,19450236..19450323,19451293..19451408, 19452700..19452827,19452928..19453007,19453721..19453962, 19454037..19454201,19454330..19454494,19454579..19454653, 19455255..19455358,19455440..19455515,19455957..19456085, 19456195..19456335,19456905..19457117,19457517..19457771, 19458313..19458859,19458955..19459115) /locus_tag="TCM_044784" /product="Nuclear RNA polymerase A2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g26190.1" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g001790.1" /inference="similar to AA sequence:ricco:30040.m000275" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc4t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc4t6; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc4t4" CDS join(19443721..19443907,19444422..19444504, 19444601..19444720,19446104..19446180,19446611..19446674, 19446986..19447056,19447206..19447283,19447377..19447422, 19448734..19448914,19448997..19449049,19449206..19449279, 19449410..19449527,19450236..19450323,19451293..19451408, 19452700..19452827,19452928..19453007,19453721..19453962, 19454037..19454201,19454330..19454494,19454579..19454653, 19455255..19455358,19455440..19455515,19455957..19456085, 19456195..19456335,19456905..19457117,19457517..19457771, 19458313..19458726) /locus_tag="TCM_044784" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30040.m000275" /codon_start=1 /product="Nuclear RNA polymerase A2 isoform 2" /protein_id="EOY19647.1" /db_xref="TAIR:AT1G29940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I366" /translation="MERQRRKRPGPFSDAEELEELKELFKHHIESFDYMIDEGLDLML KRVKPVQIFDSSSNKTLRIWLDHPEVYPPQKDRSSKTSAGALYPFECRQAKISYTGSF HIDVCFQWDGGVVVREKLNFGEFPIMLKSKRCYLREADPRKLVACKEESREMGGYFIL NGLERVVRLLILPKRNYPMSLVRNSFRDRREGYTDKAVVIRCVRGDLSSVTVKLYYLH NGSARLGFWVQGREYMLPVGIILKALIDTNDREIYTKLTCCYNEKNGEGKGAVGTQLV GERAKIILDEVQHLALFTQEQCLQHIGEHFQPIMEGMESESYSTVADVVLRNYIFVHL DDNNDKFNLLIFMVQKLFSLIDQTSAPDNSDSLQNQEVLLPGHLITIYLKEKLEDWLR KGKKLIEDAINNKSKNFDFCSMKDVKKVMEKNRPTQVSAAIENLLKTGRLITQTGLDL QQRAGFTVQAERLNYHRFLSFFRCVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG EPCGLLNHMTCTCRITSYYNSPGNIRDFFKIRMSILDVLVGVGMTTSWPKVDHAGPPQ VLPVLLDGRVVGSLPSGEAEKVVAHLRRLKLAAASVIPDDLEVGYVPLSLGGTYPGLY LFTSPSRFVRPVRNISIPSADGKDIELIGPFEQVFMEIRCPDGGNGGRSNIFPATHEE ISPTAMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAINARADQKLYHLQTPQ TPIVRTKTYTKYCMDEYPSGTNAIVAVLAYTGYDMEDAMILNKSSVERGMCHGQIYQT ETIDLGDDKSKSDRGQRIFKREHSDRSISSCLDSDGLPHVGQVIRPNEPYCSTINQVT NSKRLYNHKGSETVIVDYVAVDTKSKKHLQKANIRFRHPRNPVIGDKFSSRHGQKGVC SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFVDATPF SDSVKEAKGKTEAESESLVDELGSMLRARGFNYHGVEVLYSGVYGTELTCEIFIGPVY YQRLRHMVSDKYQVRATGQVDQITRQPIKGRKRGGGIRFGEMERDAMLAHGAAYLLHD RLHTCSDYHIADVCSLCGSILTTSIVQPPKRVVREIGGLPPARAPKKVTCHACQTSKG METVAMPYVFRYLAAELAAMNITMTIQLNSGAGA" CDS join(19444712..19444720,19446104..19446180, 19446611..19446674,19446986..19447056,19447206..19447283, 19447377..19447422,19448734..19448914,19448997..19449049, 19449206..19449279,19449410..19449527,19450236..19450323, 19451293..19451408,19452700..19452827,19452928..19453007, 19453721..19453962,19454037..19454201,19454330..19454494, 19454579..19454653,19455255..19455358,19455440..19455515, 19455957..19456085,19456195..19456335,19456905..19457117, 19457517..19457771,19458313..19458588,19458711..19458859, 19458955..19459006) /locus_tag="TCM_044784" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase isoform 1" /protein_id="EOY19646.1" /db_xref="Phytozome:GSVIVT01036642001" /db_xref="TAIR:AT1G29940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLY1" /translation="MLKSKRCYLREADPRKLVACKEESREMGGYFILNGLERVVRLLI LPKRNYPMSLVRNSFRDRREGYTDKAVVIRCVRGDLSSVTVKLYYLHNGSARLGFWVQ GREYMLPVGIILKALIDTNDREIYTKLTCCYNEKNGEGKGAVGTQLVGERAKIILDEV QHLALFTQEQCLQHIGEHFQPIMEGMESESYSTVADVVLRNYIFVHLDDNNDKFNLLI FMVQKLFSLIDQTSAPDNSDSLQNQEVLLPGHLITIYLKEKLEDWLRKGKKLIEDAIN NKSKNFDFCSMKDVKKVMEKNRPTQVSAAIENLLKTGRLITQTGLDLQQRAGFTVQAE RLNYHRFLSFFRCVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTC TCRITSYYNSPGNIRDFFKIRMSILDVLVGVGMTTSWPKVDHAGPPQVLPVLLDGRVV GSLPSGEAEKVVAHLRRLKLAAASVIPDDLEVGYVPLSLGGTYPGLYLFTSPSRFVRP VRNISIPSADGKDIELIGPFEQVFMEIRCPDGGNGGRSNIFPATHEEISPTAMLSVVA NLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAINARADQKLYHLQTPQTPIVRTKTYTK YCMDEYPSGTNAIVAVLAYTGYDMEDAMILNKSSVERGMCHGQIYQTETIDLGDDKSK SDRGQRIFKREHSDRSISSCLDSDGLPHVGQVIRPNEPYCSTINQVTNSKRLYNHKGS ETVIVDYVAVDTKSKKHLQKANIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDIDMPF SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFVDATPFSDSVKEAKGKT EAESESLVDELGSMLRARGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDK YQVRATGQVDQITRQPIKGRKRGGGIRFGEMERDAMLAHGAAYLLHDRLHTCSDYHIA DVCSLCGSILTTSIVQPPKRVVREIGGLPPARAPKKWSWGLKAIAVLKGFVQNPNHQG LKNVAVMAGWREIGMISANMESSSLNEGYAKILFCKQFSNNHLL" mobile_element complement(19451020..19451076) /note="source:CACAO_M_S_E101856_F12_scaffold_9 7017 7073" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19459995..19466537 /locus_tag="TCM_044785" /note="dbxref CacaoGD:Thecc1EG044785" mRNA join(19459995..19460265,19461950..19463788, 19466462..19466537) /locus_tag="TCM_044785" /product="Polynucleotide adenylyltransferase family protein" /inference="alignment:exonerate- protein:2:ricco:28505.m000119" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036384t1" /inference="similar to AA sequence:ricco:28505.m000119" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5470t1" CDS join(19460192..19460265,19461950..19463615) /locus_tag="TCM_044785" /note="dbxref ricco:28505.m000119; paralog of Thecc1EG036384t1" /codon_start=1 /product="Polynucleotide adenylyltransferase family protein" /protein_id="EOY19648.1" /db_xref="TAIR:AT1G22660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94K06" /translation="MASKGLRATYTIRALDCLMDCASVDGTSIDWPTTFTATSNPTYQ NQSLPSPFLTCGAAMATAACNPVKEQIELTETERKIFDRLLNTLRYFNLQTQLRVAGG WVRDKLLGKECCDIDIALDNMLGSEFVYKVREYLSSIGEEAQGLAVIPSNPEQSKHLE TARMRLFDLWIDFVNLRCEDYSENSHIPRRKFGTAEEDAYRRDLTINSLFYNININLV EDFTKRGIEDLKFGRIVTPLPPKETFSDDPLRVLRAIRFATRFGFALDEELKKAAACA DVKTALADKISRERIGTEIDLMISCNQPVQAVDYICDLTFFWVVFNLPPGVQPAVSEG CYRLSAAYLDATWKLLQRIGCSSFSDEQRRLALYSALFLPLRNATYKDRKAKKIPAVN YIFKDSLKRKASDAETVINIHKSLGKFLSLIPCLLSNDDMQLTELDWGREFVHVPVSS KLRVLTGFLLREIKDFWRVALLMSTLLYPTDIDCTQDDGDKQFQLDKRKKLFVSVENA VVKLGLEKVWDIKPLVNGKDIMNVLQLRVGGPLVSEWHQKVLAWQLGHPSGTAEECLD WMRERCSNCLRLS" mobile_element 19461059..19461221 /note="source:scaffold_4_CACTA_0510 5730 5882" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19461758..19461882 /note="source:CACAO_M_E44184_F10_scaffold_5 4522 4668" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19464499..19464558) /note="source:CACAO_Mutator_E1149_scaffold_5 4718 4774" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19464514..19464570 /note="source:CACAO_PIF_E144_scaffold_10 5999 6054" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(19466620..19467654) /locus_tag="TCM_044786" /note="dbxref CacaoGD:Thecc1EG044786" mRNA complement(19466620..19467654) /locus_tag="TCM_044786" /product="QLTG3-1 protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044788t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s15850.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(19466784..19467482) /locus_tag="TCM_044786" /note="paralog of Thecc1EG044788t1" /codon_start=1 /product="QLTG3-1 protein" /protein_id="EOY19649.1" /db_xref="Phytozome:POPTR_0001s15850.1" /db_xref="TAIR:AT4G12500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D6RRB2" /translation="MASKGGVSTALFVSLNLLFFALVNSRNVNYQPAESNASSNGVGE NSHDHRSSNQIQSNSNGSSNDGSFASGRTNSDDSSLRVGEILHDLLNGDSSNKKGLSN FNDLSNESGDNSNDNSKDSTTNSRNPVDNLPAAAMILGALNQQGKSPCNPLNLGVCAN LLNGLVKVELGDVPTKPCCTLIQGLADLEAAVCLCTAIKANVLGIELNLPISLSVLLN NCGRQVSSDYQCTP" mobile_element 19467819..19467910 /note="source:scaffold_4_CACTA_0511 5700 5794" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19467835..19467953) /note="source:scaffold_1_CACTA_0016 6322 6435" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19468807..19468889) /note="source:scaffold_4_CACTA_0483 16546 16631" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19469827..19469900 /note="source:CACAO_Mutator_E592_scaffold_3 3652 3721" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19470088..19470143 /note="source:CACAO_hAT_E731_scaffold_2 987 1052" /mobile_element_type="transposon:TIR/hAT" mobile_element 19470223..19470479 /note="source:CACAO_on_E10_scaffold_2 2794 3061" /mobile_element_type="transposon:TIR/hAT" gene complement(19470639..19474072) /locus_tag="TCM_044787" /note="dbxref CacaoGD:Thecc1EG044787" mRNA complement(join(19470639..19470661,19472300..19474072)) /locus_tag="TCM_044787" /product="Sulfotransferase 2A, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044758t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19250.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage" mobile_element complement(19471849..19472022) /note="source:scaffold_7_CACTA_0795 2890 3060" /mobile_element_type="transposon:TIR/CACTA" CDS complement(19472760..19473707) /locus_tag="TCM_044787" /note="paralog of Thecc1EG044758t1" /codon_start=1 /product="Sulfotransferase 2A, putative" /protein_id="EOY19650.1" /db_xref="Phytozome:POPTR_0003s19250.1" /db_xref="TAIR:AT5G07010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TX55" /translation="MEAGHGHPSSVSEEEHDHPKNHGPIFTPFQGFWFLPQLVPNIIS FQKHFQALDDDIIVASMAKAGTTWLKALVFAVVNRTRYTLLSESPLNTATPHQLVPYF EMTLFNEDHGIPDLATIPSPRLFSTHLPYSVLAQSIKQSNARIVYVTRNPLDVIVSFW HFLRSKPEHANWPFEECFESCCRGEEYCGPFWDHVLGYWKEGLEKPNKILFLRYEDMK RDPTLQIKRIAEFLGLPFSMEEERDGVIKEIARFCSFSNLKNLEVNKTGRLLPFTPDN KHLFRKGEVSDHVNYLTPSAIERYGKILEEKLSGSGLAF" mobile_element complement(19473802..19474154) /note="source:CACAO_M_E71376_F145_scaffold_10 1 353" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19474426..19474468 /note="source:scaffold_9_CACTA_0936 4273 4316" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19474516..19474886) /note="source:INTACT146_F154_scaffold_7-int 5560 5924" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19476070..19476261) /note="source:scaffold_2_CACTA_0281 402 562" /mobile_element_type="transposon:TIR/CACTA" gene complement(19476950..19478793) /locus_tag="TCM_044788" /note="dbxref CacaoGD:Thecc1EG044788" mRNA complement(19476950..19478793) /locus_tag="TCM_044788" /product="QLTG3-1 protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G46890.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044786t1" /inference="similar to AA sequence:frave:gene09178" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5448t1" CDS complement(19477355..19478533) /locus_tag="TCM_044788" /note="dbxref frave:gene09178; paralog of Thecc1EG044786t1" /codon_start=1 /product="QLTG3-1 protein" /protein_id="EOY19651.1" /db_xref="TAIR:AT1G62510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D6RRB2" /translation="MASKAGVSTALFVSLNLLFFALVSSRNVNYQPEESNGLSKRVGE NSHGHHSSNQIQSNSNSSSNVGGFASGGTNSDDSSDGVGENSHDHHSSNQIQSNSNGS SNEGRFASGRTSSNDSSNRVGENSHDHHSSNQIQSNSNSSSNDGSFANRRTNSDNLSK RVGENSHNHHSSNQIQSNSNGSSNDGSFANGRTNSNDSSNGVGENSHNHHSSNQIQSN SNGSSNDGSFASGRTNSDDSSSRVGEILHDLLNGDSSNEKGLLNFNDLSNGSGDNSND NSKDSTTNSRKPVDILPAAAMILGGLNQQGKSTCNPLNLGVCANLLNGLVKVELGDVP TKPCCTLIQGLADLEAAVCLCTAIKANVLGIDLNLPISLSVLLNNCGREVSSDYQCTP " gene 19478887..19489415 /locus_tag="TCM_044789" /note="dbxref CacaoGD:Thecc1EG044789" mRNA join(19478887..19479478,19479567..19479930, 19480145..19480181,19480466..19480503,19480789..19480876, 19481917..19482027,19487963..19488067,19488284..19488579, 19488653..19488745,19488850..19489415) /locus_tag="TCM_044789" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g35310.1.3" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00028t00002" mobile_element 19479214..19479296 /note="source:CACAO_M_E14347_F12_scaffold_3 8757 8836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19479613..19479774) /note="source:CACAO_on_S_E46_scaffold_2 6985 7147" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19479799..19481007) /note="source:CACAO_on_S_E46_scaffold_2 5626 6833" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19480608..19481255) /note="source:scaffold_9_CACTA_0921 5354 5999" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19481430..19481533 /note="source:scaffold_1_CACTA_0010 2998 3101" /mobile_element_type="transposon:TIR/CACTA" gene complement(19481441..19483527) /locus_tag="TCM_044791" /note="dbxref CacaoGD:Thecc1EG044791" mRNA complement(join(19481441..19481798,19482692..19482821, 19483187..19483527)) /locus_tag="TCM_044791" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031484t1" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage" CDS complement(join(19481682..19481798,19482692..19482821, 19483187..19483437)) /locus_tag="TCM_044791" /note="paralog of Thecc1EG031484t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19653.1" /translation="MLSFFSPPPTGNGIQGSCRPPFTGSDAAALGSLFLPLRRQPLLS LFLRSALLSLAPAADPWRQSAAGIHAGDAGQGLDPLSTCLSPFPLLQCPSPLYPVSEH WGGTFHYPARREFFASGRVREVPGRILNSDNVEEAARDTDGYFIKSGIVTVIKDALIP SGTVI" mobile_element complement(19481712..19482240) /note="source:CACAO_on_S_E46_scaffold_2 4642 5170" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19482230..19482563) /note="source:scaffold_9_CACTA_0921 3858 4191" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19482564..19483749) /note="source:INTACT700_F304_scaffold_7-int 17023 18190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19483850..19483906 /note="source:INTACT146F_F14_scaffold_2-int 13471 13527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19483869..19485743) /note="source:INTACT700_F304_scaffold_7-int 14936 16791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19485726..19485890) /note="source:scaffold_9_CACTA_0921 3698 3862" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19487894..19490047 /note="source:scaffold_5_CACTA_0582 3199 4602" /mobile_element_type="transposon:TIR/CACTA" CDS join(19488316..19488579,19488653..19488745, 19488850..19488912) /locus_tag="TCM_044789" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19652.1" /translation="MDAQRMVENARRVAMDEMKEVKDKLEEEMQKKLEQQVQSIKIEM TDQVLTIKSEILQQINLLISQLQMRFPRPATSTINDWPSTSSQMLNESSLIDCQEMEQ IIKHQIFDNISLNQICKMVKVNVPYCSWKNKGTTSNK" gene 19498474..19499993 /locus_tag="TCM_044798" /note="dbxref CacaoGD:Thecc1EG044798" mRNA 19498474..19499993 /locus_tag="TCM_044798" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.20 coverage" CDS 19498897..19499283 /locus_tag="TCM_044798" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19654.1" /translation="MRVQHGLVGTLPSSTFTKPFSRLAQTPRFSGLQVDLPCWLRAPR IMAAAGRISTGFPEFVVESFELSLEFSPFPFDKSLKFNNPFPFDGSSFNKSCKIFSTP SDESSEFVLPLAKLPSFDEPLELLWI" gene complement(19500329..19516934) /locus_tag="TCM_044799" /note="dbxref CacaoGD:Thecc1EG044799" mRNA complement(join(19500329..19500659,19500747..19500820, 19501274..19501356,19501536..19501574,19502291..19502344, 19502438..19502551,19502663..19502715,19503185..19503258, 19503373..19503452,19503691..19503762,19504083..19504426, 19516800..19516934)) /locus_tag="TCM_044799" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044818t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5482t1" CDS complement(join(19500428..19500659,19500747..19500820, 19501274..19501356,19501536..19501574,19502291..19502344, 19502438..19502551,19502663..19502715,19503185..19503258, 19503373..19503452,19503691..19503762,19504083..19504146)) /locus_tag="TCM_044799" /note="paralog of Thecc1EG044818t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19655.1" /translation="MVRGEARLHSHASSSFSLSSSVELESTLMMLPEDKISEGEDVEN KEDNISRDSGGSSNNYGTNLSLYRNRKRWYRVGLLEMNDRDEQVALLLDMLKCICLFQ AYMTYAEAQKFREVKYVAMVSPSDDVQSAKRIMSGIFKVRPKSKKQKLSLGSILSERR QNKEKWTYNEDLEQKDSEEEEFSEDECSYDFSGFSDDKYDSYFHFDEFGKRWYKECLV DDKTEDDQVALLLDMLKCDQSEIRSIYKYHIPDLFKARMSEEEADKVAGWFLSPIFLT VLLDKIPVLKFVFSLYFLGSKEVEFVEPLCYAIFLK" gene complement(19501520..19521434) /locus_tag="TCM_044801" /note="dbxref CacaoGD:Thecc1EG044801" mRNA complement(join(19501520..19501574,19502291..19502344, 19519258..19519327,19519497..19519588,19520016..19520089, 19520204..19520283,19520520..19520591,19520775..19520829, 19521151..19521434)) /locus_tag="TCM_044801" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044818t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5498t1" mobile_element 19505429..19505533 /note="source:CACAO_PIF_E119_scaffold_3 4227 4325" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 19507868..19508506 /note="source:scaffold_9_CACTA_0931 1 645" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19508465..19508533 /note="source:INTACT292_F22_scaffold_5-int 1010 1096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19511730..19511917 /note="source:CACAO_M_E3884_F22_scaffold_1 12936 13081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19512125..19512211 /note="source:scaffold_1_CACTA_0024 6556 6643" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(19519296..19519327,19519497..19519588, 19520016..19520089,19520204..19520283,19520520..19520591, 19520775..19520829,19521151..19521183)) /locus_tag="TCM_044801" /note="paralog of Thecc1EG044818t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19656.1" /translation="MQAVLSPSHRQLMVQPEEKIGEGEDRKDKVELESSLVMQPEEKI GEGEDVKNKVDNISKDSCGSSNSYGTNLSLYRNRKRWYKVRFSEMHYRDEQVALLLDA LKCDKFELPSIYRYRSIRLFEAYMTYAEAQKVRVCKTNQVWNF" mobile_element 19521969..19522114 /note="source:CACAO_Mutator_E592_scaffold_3 3626 3762" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19522372..19523363 /note="source:INTACT522_F240_scaffold_3-int 5236 6233" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19527993..19528779) /locus_tag="TCM_044806" /note="dbxref CacaoGD:Thecc1EG044806" mRNA complement(join(19527993..19528058,19528335..19528377, 19528485..19528580,19528681..19528779)) /locus_tag="TCM_044806" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc15136t1" CDS complement(join(19528035..19528058,19528335..19528377, 19528485..19528580,19528681..19528682)) /locus_tag="TCM_044806" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19657.1" /translation="MIACIIYGGGFNYIQIILLLFLLGTETPKIKNFLRRKSGKGKIK KTKLSLSPPW" mobile_element 19531337..19534140 /note="source:CACAO_Mutator_E1018_scaffold_5 1752 4633" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19533121..19534431 /note="source:scaffold_8_CACTA_0867 13774 15135" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19534432..19536141 /note="source:INTACT287_F193_scaffold_2-int 1 1710" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19536142..19536816 /note="source:INTACT295_F13_scaffold_9-int 1 2442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19536821..19547837 /note="source:CACAO_M_S_E83372_F14_scaffold_6 11017 22014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19549787..19552322 /note="source:scaffold_5_CACTA_0603 1 2546" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19553480..19553637 /note="source:CACAO_Mariner_E229_scaffold_9 12426 12582" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 19553606..19553925 /note="source:CACAO_M_E33282_F13_scaffold_4 10299 10617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19553930..19554064) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3976 4109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19554977..19555298) /note="source:INTACT146F_F14_scaffold_2-int 4402 4641" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19555123..19555345) /note="source:scaffold_3_CACTA_0382 10413 10629" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19556486..19557113) /note="source:CACAO_M_E33804_F134_scaffold_4 2339 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19561105..19563456) /note="source:CACAO_M_E979_F134_scaffold_1 1 2353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19564528..19566514) /note="source:CACAO_M_E12782_F33_scaffold_3 972 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19566615..19567552 /note="source:CACAO_M_E58911_F33_scaffold_9 2018 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19573179..19575719) /note="source:CACAO_M_S_E4911_F76_scaffold_1 13693 16262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19575948..19579156) /note="source:CACAO_M_E71369_F328_scaffold_10 1 3209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19580888..19581889 /note="source:CACAO_M_E35674_F13_scaffold_5 10897 11896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19583432..19584192 /note="source:INTACT405F_F91_scaffold_4-int 6877 7609" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19584056..19584211) /note="source:CACAO_M_E23144_F272_scaffold_4 8120 8275" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19584801..19584963) /note="source:CACAO_M_S_E122136_F76_scaffold_10 5779 5938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19585064..19588052 /note="source:CACAO_M_E157_F76_scaffold_1 2740 5729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19588547..19594168 /note="source:CACAO_M_E72736_F115_scaffold_10 1 5623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19592171..19594245) /note="source:INTACT34_F115_scaffold_5-int 2508 4585" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19594246..19597342) /note="source:CACAO_M_S_E121717_F42_scaffold_10 1 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19597343..19599856 /note="source:CACAO_M_E52269_F115_scaffold_7 601 3115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19603426..19604519 /note="source:INTACT135F_F90_scaffold_2-int 12866 13997" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(19605762..19644771) /locus_tag="TCM_044818" /note="dbxref CacaoGD:Thecc1EG044818" mRNA complement(join(19605762..19606801,19606897..19606988, 19607077..19607150,19607611..19607690,19607873..19607923, 19608708..19608761,19608850..19608972,19609091..19609182, 19609614..19609687,19609800..19609879,19610120..19610191, 19610482..19610553,19610833..19610892,19617624..19617751, 19622831..19623063,19626387..19626639,19627028..19627310, 19644258..19644771)) /locus_tag="TCM_044818" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00081t00003" CDS complement(join(19606746..19606801,19606897..19606988, 19607077..19607150,19607611..19607690,19607873..19607923, 19608708..19608761,19608850..19608972,19609091..19609182, 19609614..19609687,19609800..19609879,19610120..19610191, 19610482..19610553,19610833..19610892,19617624..19617751, 19622831..19623063,19626387..19626639,19627028..19627083)) /locus_tag="TCM_044818" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19658.1" /translation="MVSNELKDGVIWKATTSGRNEIIFNGKRWDSIQLFSVSKMRIVV WMKAKWLELVKQIDDTFRWPNRVKMMQEKAIAHGPILWLTPEEGWLKFNTNGAASISL EKEKENEGRWMGVSIEGVDWPKEGKWKGANRTRDCTGWTSKGLGRSLAERAMRLGVGF GDKWNVETKKRRKKWEDWGKRIDVTTWNSYRAHDNCRDIPMALITPNADRNPVRLSIN FRISPESTLMMQPEEKIGEEDVKSKVEPESTLMMQCEDKLSEGEDVKNKVELESTLMM QPEEKIGEGEDVKNKEDIISQDYGSSSNSYGTNLSLYRNRKRWYKVRFAETHYRDEQV ALLLDALKCDKSELHSIYRHRSIRMFEAYMTYAEAQKVRALEEVAYVGLVPMSDNVQS AKRTKSGIFEARPKSKKQKRSLGSILSERRQNKEKWRYNEDLEQEAKIEDSEEEDFSE DEWSRDYSGSSDTCEGYYGFDEFGKRWYKVCLSGEKAKDDQVALLLDVLNCEQSGIRS IYIYHTPDLFKARMTEEEADRVAGLGEVEFVEPLSYIIALD" mobile_element complement(19614804..19617745) /note="source:CACAO_M_E71365_F86_scaffold_10 1 2942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19635990..19636069) /note="source:CACAO_M_E13038_F22_scaffold_3 17643 17727" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19636159..19636381 /note="source:CACAO_M_S_E100312_F82_scaffold_9 3906 4128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19636483..19637379 /note="source:CACAO_M_S_E100312_F82_scaffold_9 5246 6138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19637482..19638188) /note="source:CACAO_M_E14534_F323_scaffold_3 1 712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19640049..19640974 /note="source:INTACT217_F173_scaffold_6-int 5221 5781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19642947..19643065 /note="source:INTACT217_F173_scaffold_6-int 7497 7626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19643066..19645475) /note="source:CACAO_M_E2982_F85_scaffold_1 945 3335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19645472..19645710 /note="source:scaffold_4_CACTA_0494 7496 7735" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19645811..19649000) /note="source:CACAO_M_E84927_F323_scaffold_10 1 3193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19649001..19649949 /note="source:CACAO_M_E43781_F323_scaffold_5 2512 3457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19649950..19650073 /note="source:INTACT217_F173_scaffold_6-int 8158 8281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19650076..19652134) /note="source:INTACT214_F33_scaffold_8-int 2673 4734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19650136..19652777 /note="source:INTACT217_F173_scaffold_6-int 6309 8962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19652717..19654474) /note="source:INTACT182_F33_scaffold_9-int 1 1764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19656285..19657171) /note="source:CACAO_M_E57385_F197_scaffold_9 3855 4722" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(19656896..19666811) /locus_tag="TCM_044824" /note="dbxref CacaoGD:Thecc1EG044824" mRNA complement(join(19656896..19656971,19663951..19664270, 19666210..19666811)) /locus_tag="TCM_044824" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" mobile_element 19657172..19657444 /note="source:CACAO_M_E1255_F15_scaffold_1 1 273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19657440..19657544) /note="source:CACAO_M_E57385_F197_scaffold_9 3855 3959" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19657545..19660375) /note="source:CACAO_M_E71358_F15_scaffold_10 1 2831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19660376..19662444) /note="source:CACAO_M_E57385_F197_scaffold_9 1805 3859" /mobile_element_type="retrotransposon:LTR/Copia" gene 19663826..19667274 /locus_tag="TCM_044826" /note="dbxref CacaoGD:Thecc1EG044826" mRNA join(19663826..19664113,19666427..19666689, 19666874..19667274) /locus_tag="TCM_044826" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016903t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS complement(join(19664045..19664270,19666210..19666352)) /locus_tag="TCM_044824" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19659.1" /translation="MLTNLIIGGKEIKADNVICLFIVDAVLDARNTNLNCASFFSNLQ FGQSLSIDWVFMLTIGVGRLYSANVVELLLQSTQCIGRVSKDPSGGFSFSHAQKVDLV YFIATCIGRRKPPPDRRTPS" CDS join(19666431..19666689,19666874..19667004) /locus_tag="TCM_044826" /note="paralog of Thecc1EG016903t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19660.1" /translation="MRFKLSSIKYIESILEEGHVYCISDFKVSKLKKSYNVISAPCTI TITLKTKIVKASSSVLSFQRHYFQFLEFEHLPRRYKINETLTNVIGLIISMSKVTAMY VSNKSTKAPKRNFQLQNIRFATSNYTF" gene complement(19669336..19675377) /locus_tag="TCM_044828" /note="dbxref CacaoGD:Thecc1EG044828" mRNA complement(join(19669336..19670072,19670550..19670603, 19671299..19671408,19671517..19672123,19672212..19672404, 19672696..19672822,19672923..19673279,19673435..19673493, 19673585..19674152,19674241..19674458,19675287..19675377)) /locus_tag="TCM_044828" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma10g23520.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.34 coverage; weak similarity to Subtilisin-like serine endopeptidase family protein; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7836t1" CDS complement(join(19669873..19670072,19670550..19670603, 19671299..19671408,19671517..19672123,19672212..19672404, 19672696..19672822,19672923..19673279,19673435..19673493, 19673585..19674152,19674241..19674455)) /locus_tag="TCM_044828" /note="weak similarity to Subtilisin-like serine endopeptidase family protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19661.1" /db_xref="Phytozome:Glyma10g23520.1" /db_xref="TAIR:AT5G03620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TLL6" /translation="MLVQQSMFKFRKFIMDEEERERIEDEEKVVDEEKAKKVIGIIDT GINVNHECFEDKHLPILEGKKLQIPFRRKFVALENFTKAKRPTIAPALLDYNFPEDLN GHGTACASIAAGTLIELEWLKDIYGVSNTRIQGANPFARIASYKVNGSYMVLDKSFQV LKSSLLDAIKKAIADKVDVILVALATDVKQDRASYLFDPVNLGGYLAMKENILLCTSS GNKGDDYFTLSGGLAPWVLTVGSCNSGGKFITNIELGDALKLKGYGAFIDTDGHACEL IDYSECFEQDSEINKGKGIAKGVDAKERGKQIEETYPKRKKTIKEETQPQKKDWKIRE EVVEGRIIYYNGDRIWPINAILDAKVAGVICVDDGMQFRSYELWRPVVYVKDGDGQQI VSYIENNSKFETKAKARIYKTVYEEEDEEVCRVSYESGKGPNSYDSYVLKPDICAPGE DILCASKYDMQNMYAHYSVMSGTSMASAVTVGLISYIRAIHKNWGPARIKSAIMTSAK SINKPADMDVLGYGNECLNPLKAIDPGLVYDISLEEFRRYLLNLDGDKEYLSSNGENI QGEEILGMDLNLPNFSLVLDERSEYIFNRTLTNVGSSQCSYKAKIIFHPRFFTNKVGR ALQERFPRSIDIRVEPDVLEFNNIEQQRCFRLIVRSSGSLGNILTKVMLVRATLVWQE QKERNGRDQPHSVSSPIIIMSSHLWRLRPPIEKIAHDSMLPKKRFAEQGDVATSKGKQ KAIKIGLYKASNTWNRVREKRPQELTALQHKFSTLQRCLVPLLRGRNISAAASSSQRC SAVPPYQTELTALQHQVLNAAALFSTIATRQ" gene complement(19678181..19682634) /locus_tag="TCM_044829" /note="dbxref CacaoGD:Thecc1EG044829" mRNA complement(join(19678181..19678654,19678769..19678845, 19679408..19679458,19679548..19679584,19680207..19680256, 19680390..19680476,19680594..19680646,19681111..19681184, 19681297..19681376,19681610..19681681,19682023..19682634)) /locus_tag="TCM_044829" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044799t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5552t6" CDS complement(join(19678502..19678654,19678769..19678845, 19679408..19679458,19679548..19679584,19680207..19680256, 19680390..19680476,19680594..19680646,19681111..19681184, 19681297..19681376,19681610..19681681,19682023..19682038)) /locus_tag="TCM_044829" /note="paralog of Thecc1EG044799t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19662.1" /translation="MKETKVQPESTSMVQPEEKIGEGEDVKNREDNISRDSGGFSNSY GTNLSLYTTEKRWYRVGLLEMNERDEQVALLLDVLKCICLFQAYMTYAQAQKFHALEE VKYVAIVSPSDNVQSAKRTKSGILEAYSRTRDKTRKNGGIMKVYTVFLRAVKVGNLEQ VSKIEDSEEEDFLVASLLYVVKWLWYKVGLVDEKTEDDQQDQSEIDSIYNYYTPDLFN AHMTEEEADRVDGWFLYPIVLILPLDKIPVC" gene complement(19685405..19686321) /locus_tag="TCM_044830" /note="dbxref CacaoGD:Thecc1EG044830" mRNA complement(19685405..19686321) /locus_tag="TCM_044830" /product="QLTG3-1 protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044788t1" /inference="similar to AA sequence:frave:gene09178" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(19685643..19686239) /locus_tag="TCM_044830" /note="dbxref frave:gene09178; paralog of Thecc1EG044788t1" /codon_start=1 /product="QLTG3-1 protein" /protein_id="EOY19663.1" /db_xref="TAIR:AT1G62510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D6RRB2" /translation="MASKVIASTALFLYFNLLILAFSVSFRNIDYPSDNDAKTNSHDS LNGVGEILHDLLNGDSSNGKGLINFNGLSNESGDNSNDNSKDSTANSEKPVVILPAEA MILGALNHQGKSTCNSLNLGVCANLLNGLVKAELGDVPTKPCCSLIQGLADLEAAACL CTAIKASVLGINLDLPISLSVLLNNCGREVSSDYQCTP" gene complement(19688896..19689881) /locus_tag="TCM_044831" /note="dbxref CacaoGD:Thecc1EG044831" mRNA complement(19688896..19689881) /locus_tag="TCM_044831" /product="QLTG3-1 protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400048750" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044830t1" /inference="similar to AA sequence:Phytozome:Glyma17g14850.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(19689206..19689805) /locus_tag="TCM_044831" /note="paralog of Thecc1EG044830t1" /codon_start=1 /product="QLTG3-1 protein" /protein_id="EOY19664.1" /db_xref="Phytozome:Glyma17g14850.1" /db_xref="TAIR:AT4G12500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D6RRB2" /translation="MASKVTASTALFLSFNLLFLAFSVSSHNVDDPSNNDATINPHDS SSGVGEILDGLLNGDSSNGKGLINFDDLSNGSGDNSNNNSKDSATNSENPVVNLAAAA MVLGALNQQGKSTCKPLNLGVCANLLNGLVKVELGDVPTKPCCSLIQGLADLEAAVCL CTAIKANVLGIIKLDLPISLSVLLNNCGREVASDYQCTP" gene complement(19691421..19697081) /locus_tag="TCM_044832" /note="dbxref CacaoGD:Thecc1EG044832" mRNA complement(join(19691421..19691525,19693178..19693735, 19696461..19697081)) /locus_tag="TCM_044832" /product="QLTG3-1 protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s20110.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044830t1" /inference="similar to AA sequence:frave:gene09178" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(19691514..19691525,19693178..19693735, 19696461..19697027)) /locus_tag="TCM_044832" /note="dbxref frave:gene09178; paralog of Thecc1EG044830t1" /codon_start=1 /product="QLTG3-1 protein" /protein_id="EOY19665.1" /db_xref="TAIR:AT1G12090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D6RRB2" /translation="MASKVSASTALFLSFNLLFLAFSVSSHSVDYPSDNDGKINPHDS SNGVGKVLHDLLNGDSSNGKGLVNSDELSNGSGHNSNDNSKDSTTNSENPVVNLAAAA MVLGALNQQGKSSCKPLNLGVCANLLNGLVKVDLGDVPTKPCCSLIQGLADLEAAVCL CTAIKANVLGIKLDLPISLSVLLNNCGREVSASTALFLSFNLLFLAFSVSSHNVDYPS DDDGKINPHDSSNGVGKVSHDLLNGDSSNGKGLVNSDELPNGSEDNSNDNSKDSAKNS ENPIVNLAAAAMVLGALSQQGKSNCNPLNLGVCANLLNGLVKVELGDVPTKPCCSLIQ GLADIEAAVCLCTAIKANVLGIIKLDLPISLSVLLNNCGRELYF" gene 19697603..19700258 /locus_tag="TCM_044833" /note="dbxref CacaoGD:Thecc1EG044833" mRNA join(19697603..19697649,19698908..19699358, 19699631..19700258) /locus_tag="TCM_044833" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037902t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(19698952..19699358,19699631..19700138) /locus_tag="TCM_044833" /note="paralog of Thecc1EG037902t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19666.1" /translation="MTWNVEKINNIFLPYERGLILSMPLSFKRPKDRQVWFFNTHGRY KVQSGCRLIQAASLNNVVGCLNGNRLGLWKKIWQLNIPRKIILFVWKTINGILLTREA IIQSKVNVEGNCPNWENELELNTIVCVVAHWLGQTVKWSLPRVCKMNVDAALVRLDDE KKMGASFVVRDESGQLILAGASKLNFRTSAEEAELVAVVWSLQCCKREGLTIPELELD SLMVVNWIKEKKVTGVFGNTVRDFFDLMRQVGCEYVQYCPRVCNNVAHLVAKRVKEMA EEAMAWRRIEDMYSNIQHAMLRDIRSSN" mobile_element complement(19701745..19701799) /note="source:scaffold_3_CACTA_0382 1861 1916" /mobile_element_type="transposon:TIR/CACTA" gene complement(19703460..19708268) /locus_tag="TCM_047099" /note="dbxref CacaoGD:Thecc1EG047099" mRNA complement(join(19703460..19703647,19703810..19703869, 19703984..19704106,19704868..19705322,19706154..19706690, 19707189..19708268)) /locus_tag="TCM_047099" /product="Staurosporin and temperature sensitive 3-like b" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s00900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037807t1" /inference="similar to AA sequence:frave:gene09173" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc258t7" CDS complement(join(19703518..19703647,19703810..19703869, 19703984..19704106,19704868..19705322,19706154..19706690, 19707189..19708040)) /locus_tag="TCM_047099" /note="dbxref frave:gene09173; paralog of Thecc1EG037807t1" /codon_start=1 /product="Staurosporin and temperature sensitive 3-like b" /protein_id="EOY19667.1" /db_xref="TAIR:AT1G34130.1" /translation="MSSMISSDLLKPFKLKTKQQELLIRVSILCLVYILAFITRLFSV LRYESMIHEFDPYFNYRTTLYLTQNGFYDFWNWFDSESWYPLGRIIGGTLYPGLMVTA ALIYRLLHFLRFAVHIREVCVLTAPFFASNTTLVAYFFGKEIWDSGAGLVAAILIAVC PGYISRSVAGSYDNEGVAIFALLFTFYLFVKAVNTGSLAWGLASAFGYFYMVSAWGGY VFIINLIPLYVLVLLITGRYSMRLYVAYNCMYILGMLLAMQIRFVGFQHVQSGEHMAA MGVFFLMQVFYFLDWVKHMLSDTKLFQAFLKITVTFAVAVGAVALGVGMVSGYISPWT GRFYSLLDPTYAKDHIPIIASVSEHQPTAWSSFMFDFHILLFLFPAGLYFCFKRLSDA TIFIVMYGLTSLYFAGVMVRLILVATPAVCLISAIAVSATVKNLTVLLRSKNKVVQTG STKGTSSGKASSKASLDQSQPFQKNGAMALLFGAFYLLSKYATHCTWVTSEAYSSPSI VLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDNNT WNNTHIATVGRAMSSYEDEAYEIMRSLDVDYVLVVFGGVTGYSSDDINKFLWMVRIGG GVFPVIREPDYLVNGEYRVDKGAAPKMLNCLMYKLSYYRFGELVTEYGRPPGYDRARG VEIGNKDIKLEHLEEAFTTSNWIVRIYKVKPPNNRW" gene complement(19708698..19713984) /locus_tag="TCM_047100" /note="dbxref CacaoGD:Thecc1EG047100" mRNA complement(join(19708698..19709484,19710808..19710975, 19711061..19711321,19711407..19711485,19712011..19712108, 19712192..19712740,19713597..19713984)) /locus_tag="TCM_047100" /product="Arginine N-methyltransferase 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06750.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06750.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5717t2" CDS complement(join(19709026..19709484,19710808..19710975, 19711061..19711321,19711407..19711485,19712011..19712108, 19712192..19712740,19713597..19713896)) /locus_tag="TCM_047100" /codon_start=1 /product="Arginine N-methyltransferase 3" /protein_id="EOY19668.1" /db_xref="Phytozome:POPTR_0001s06750.1" /db_xref="TAIR:AT3G12270.1" /translation="MANNLRETEETNRLTQENQEEEEDDDDSKEPWTEEENEDDDENG EESEFLCLFCDSKYGSCDALFEHCRLTHFFDFNGIRKELGLDFYGSFKLINYVRSQVA DNRCWSCGVHCQSKQDLQSHLHQSVNSKDFKLLLDDDKYLNPFMQEDSLLYSFGGDEE DENDYNTSFDEEEVVRNFGNVCIDDDDIAEEIELNAETSNKDRNKAVMTDSNGHLSLA SSSKRIAENGRDYGESVSSCDSNPKDKHSTVYIADVVEKDIKKVNESYFGSYSSFGIH REMISDKVRTDAYREALLKNPSLLNGAVVMDVGCGTGILSLFAAQGGASRVIAIEASE KMSTVATQIAKDNGLWRSKTDIAGNNNCSGVIEVVQNMVENLDKSIQIQPHSVDILVS EWMGYCLLYESMLSSVLFARDRWLKPGGAILPDTATIFVAGFGKGGTSLPFWENVYGF NMSSIGKEVVEDAAKFPIVDVVNHHDLVTNAALLQSFDLATMKPEEVDFTAITELEAK LDSLASNPNDLKQQATSCYGIVLWFETGFTSRFCKETPTVLSTSPYTPKTHWKQTILT FREPIAMASCKFTADGSAPVGTDACPASKILLRISIARATQHRSIDISLETDGVCPNG QKRSWPVQMFNLS" mobile_element 19716381..19717441 /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 1093" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19717431..19717649) /note="source:CACAO_M_S_E51722_F106_scaffold_4 7039 7234" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19718663..19719880 /note="source:INTACT8_F106_scaffold_3-int 2397 3606" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19722614..19723228 /note="source:CACAO_M_E84368_F4_scaffold_10 17362 17981" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(19726559..19738431) /locus_tag="TCM_044835" /note="dbxref CacaoGD:Thecc1EG044835" mRNA complement(join(19726559..19726846,19735612..19736721, 19737587..19737666,19738320..19738431)) /locus_tag="TCM_044835" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is paralog weak, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" mobile_element complement(19728286..19733129) /note="source:INTACT123_F40_scaffold_10-int 1 4844" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(19735817..19736224) /locus_tag="TCM_044835" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19669.1" /translation="MRKLMLSLAGFRSAFGVMSAYRDVAEVVTGPMGVPGRDKNHIFC LYLHGERNNHIYVNSIYNSNNSLSKRDNKIIDRESHNQIEWLRKRLLFSLNQLIKLLY DCLICLTMVIVSYFFCHMHFLSFLLFILFFSFR" mobile_element complement(19739771..19742885) /note="source:CACAO_M_E71354_F42_scaffold_10 1 3115" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19743946..19768102 /locus_tag="TCM_044838" /note="dbxref CacaoGD:Thecc1EG044838" mRNA join(19743946..19744299,19744469..19744504, 19744662..19744837,19744945..19745009,19745734..19746058, 19746338..19746404,19746549..19746702,19749451..19749618, 19749754..19749864,19750183..19750392,19750769..19750870, 19750948..19751178,19752346..19752420,19752572..19752652, 19758078..19758257,19758380..19758535,19759927..19760019, 19760652..19760723,19762146..19762263,19763273..19763451, 19764461..19764545,19765056..19765160,19765231..19765337, 19765965..19766042,19766124..19766219,19766552..19766647, 19766972..19768102) /locus_tag="TCM_044838" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene14192" /inference="similar to AA sequence:ricco:30131.m007160" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5741t3" CDS join(19744497..19744504,19744662..19744837, 19744945..19745009,19745734..19746058,19746338..19746404, 19746549..19746702,19749451..19749618,19749754..19749864, 19750183..19750392,19750769..19750870,19750948..19751178, 19752346..19752420,19752572..19752652,19758078..19758257, 19758380..19758535,19759927..19760019,19760652..19760723, 19762146..19762263,19763273..19763451,19764461..19764545, 19765056..19765160,19765231..19765337,19765965..19766042, 19766124..19766219,19766552..19766647,19766972..19767121) /locus_tag="TCM_044838" /note="dbxref ricco:30131.m007160" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19670.1" /db_xref="TAIR:AT5G06970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL49" /translation="MDEETAVELLQRYRRDRQILLDFILSGSLVKKVVMPPGAVTLDD VDLDQVSVDYVLSCIKKGGMLELSEAIRDYHDHTGLPQMNSAGSAGEFFLVTNTESSG SPPRRAPPPIPVSVSIPTPSAPVFAPSPVLPTVSRSESFDSEQVQELTVDDIEDFEYD DDLEEVNSLKISRRNPNDVGDLVLKLPSFATGITDDDLRETAYEILLACAGASGGLIV PSKEKKKEKRSKLMRKLGRSRSENIVSQSQNAPGLVGLLETMRVQMEISEAMDIRTRQ GLLNALAGKVGKRMDALLIPLELLSCISRTEFSDKKAYIRWQKRQLNMLAEGLVNHPA VGFGESGRKASEFRILLAKIEESEAFPPSAGEVQRTESLRSLRDIAIPLAERPARGDL TGEVCHWADGYHLNVRLYEKLLLSVFDVLDEGKLTEEVEEILELLKSTWRVLGITETI HYTCYAWILFRQYVITSEQGILRHAIDQLKKIPLKEQRGPQERLHLKSLHVRVDGEEG SRDVSLLQSFLSPIQKWADKQLGDYHLNFAEGSVVMQDIVTVAMIVRRLLLEESDKAV QSSTVSDRDQIELYISSSVKNSFARKLQTVDKSDAIEHPLALLAEEVKMLLKKDSTVF MPILCQRHPNATIVSASLLHKLYGNKLKPFVDGAEHLTEDVVSVFPAADNLEQYILDL IKSACEGENVEIHFRKLIPYQIESISGTVVMRWINSQLGRIIGWVERTLQQERWDPIS PQQRHGSSIVEVYRIVEETVDQFFAIKAPMRPMELNALFSGIDNAFQVYANHIVDNLA SKDDLIPPLPVLTRYRKEAGIKAFVKKELFDSRLPDQRRSIEINVLTTATLCVQLNTL YYAISQLNKLEDSIWERWTRKKPQDKIYIRKSMDDKSKSSTQKGTFDRSRKDINAAID RIREFTGTKIIFWDLREPFIENLYKPNVSQSRLEAVIEPLDAELNQLCDIIVEPLRDR VVTSLLQASLEGFLRVLLDGGPSRVFLPSDAKLLEEDLEILKEFFISGGDGLPRGVVE NQVARVRLVVKLQGLETRELVEDLRSSSGKLGADNQTLLRILCHRADSEASQFVKKQY KIPKSSA" mobile_element 19753070..19754180 /note="source:CACAO_M_S_E66869_F40_scaffold_6 1 1102" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19754852..19755905) /note="source:INTACT123_F40_scaffold_10-int 2700 3754" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19755905..19757378 /note="source:INTACT278_F40_scaffold_5-int 2251 3765" /mobile_element_type="retrotransposon:LTR/Copia" gene 19768542..19770807 /locus_tag="TCM_044843" /note="dbxref CacaoGD:Thecc1EG044843" mRNA join(19768542..19768569,19770123..19770807) /locus_tag="TCM_044843" /product="RNA polymerase Rpb7-like, N-terminal domain isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s16160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044847t1" /inference="similar to AA sequence:ricco:29838.m001644" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09411t00001; inference alignment:Newbler:10:TSA:cgbaP1_g09411t00001" mRNA join(19769990..19770015,19770123..>19770658) /locus_tag="TCM_044843" /product="RNA polymerase Rpb7-like, N-terminal domain isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s16160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044847t1" /inference="similar to AA sequence:ricco:29838.m001644" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is medium, protein is partial3; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc112t4; inference alignment:Newbler:10:TSA:cgbaP1_g09411t00001" CDS 19770130..19770660 /locus_tag="TCM_044843" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29838.m001644; paralog of Thecc1EG044847t1" /codon_start=1 /product="RNA polymerase Rpb7-like, N-terminal domain isoform 1" /protein_id="EOY19671.1" /db_xref="TAIR:AT4G14660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HDY5" /translation="MFLKVQLPWNVIIPADSLGAKGLMLQKAIVVHLLDDFACKKATK DLGYFIAVTTLESIGDGKVRQNTGDVLFPVVFSGITFKMFRGEILEGVVHKILKHGVF LRCGPVQNIYLSHLKMPDYHYVPGENAIFMNDKHSKIEKDVVVRFIVIGTKWLEAERE FQALVSLEGDYLGPVS" CDS 19770130..>19770657 /locus_tag="TCM_044843" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29838.m001644; paralog of Thecc1EG044847t1" /codon_start=1 /product="RNA polymerase Rpb7-like, N-terminal domain isoform 2" /protein_id="EOY19672.1" /db_xref="TAIR:AT4G14660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HDY5" /translation="MFLKVQLPWNVIIPADSLGAKGLMLQKAIVVHLLDDFACKKATK DLGYFIAVTTLESIGDGKVRQNTGDVLFPVVFSGITFKMFRGEILEGVVHKILKHGVF LRCGPVQNIYLSHLKMPDYHYVPGENAIFMNDKHSKIEKDVVVRFIVIGTKWLEAERE FQALVSLEGDYLGPVS" gene complement(19771801..19775951) /locus_tag="TCM_044844" /note="dbxref CacaoGD:Thecc1EG044844" mRNA complement(join(19771801..19772658,19772837..19775212, 19775360..19775951)) /locus_tag="TCM_044844" /product="Leucine-rich repeat receptor-like protein kinase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044853t1" /inference="similar to AA sequence:ricco:29666.m001469" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc341t6" CDS complement(join(19772282..19772658,19772837..19775212, 19775360..19775630)) /locus_tag="TCM_044844" /note="dbxref ricco:29666.m001469; paralog of Thecc1EG044853t1" /codon_start=1 /product="Leucine-rich repeat receptor-like protein kinase family protein, putative" /protein_id="EOY19673.1" /db_xref="TAIR:AT4G08850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9INP4" /translation="MASFLIPFQALFFLMLVPPQSSNGFTSLAAAAAAKEAETLLKWK ASLDNKSQTLLSSWLGDTHCNWVGITCDKAGSITNLSLPNYVEGLRGNIPSEICLLKS LQWVSLVGNKISGSIPQEIGRLSSVSEIYFNHNYLSGPIPASIGSLHNLTKLHLGSNR LTGRIPGEVGMLRSLLYLDFSNNSLSGPIPESIGNLTKLVQLYLHRNELSGSIPSEIG QLGSLSDLQLSTNNLTGVIPASIGNLTSLSYLNLNGNMFSGSIPPEVGMLKSLSVLVL AKNNFSGSIPASIGNLTKLTVLFLIYNNLSGSIPPTFSNLTHLESLQLGHNHLSGQLP ENLCSNGLLVNISVINNNLMGQIPTSLRDCKSLYRVRLEGNHLTGNISEAFGVYPNLN YIALSNNWFYGELSPKWGQCHNLTSLQISNNNISGKIPPELEHATQLQELDLSFNHLI GEIPKDLGSLSLMFRLLLSGNQLSGKIPLEIGVLSNLEHLNLASNDLSGPIPNQLGEC SKFLSLNLSRNKLGESIPFSLSYIYGLRSLDLSQNLLVGVIPQQLGKLHTLEILDLSH NMLRGSIPIDFHYLQSLTFVNISYNQLEGPIPNIKAFHEASFDGLRNNKGLCGNATGL MPCASITSNKMGHKKRTTVTILVVLLPFGIPLLIFTLAGGFLILRQKIRNKKSESREA QLGDIFTVLGFDGRILYEKIIEATEDFSSNYCIGSGRYGNVYKAVLPMGQVVAVKKLH QHEDSMLINNLKAFESEIHALTEIRHRNVVKLHGFCSHSKHSFLVYEFMERGSLRMIL SNNEEAAELDWIKRLNVVKGLANALSYMHHDHSPPIIHRDISSNNVLLDFDYEAHVSD FGTARLLNPDSSNWTSFAGTIGYTAPELAYTMKVDEKCDVYSFGVLTMEILMGRHPGD LISCLSSSLSAPEANDQKILLQGVIDQRLSPLVRQVAKDVVFATKLAFACVNGNPKFR PTMGQVAQALTHPSPQLPKPFSMIELGELFGGVPG" mobile_element complement(19780305..19780401) /note="source:CACAO_M_E22965_F8_scaffold_4 6033 6129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19780402..19784565) /note="source:INTACT375_F10_scaffold_10-int 1 4164" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19784566..19785137 /note="source:INTACT20_F8_scaffold_7-int 6363 6942" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19785504..19821263 /locus_tag="TCM_044847" /note="dbxref CacaoGD:Thecc1EG044847" mRNA join(19785504..19786113,19821142..19821263) /locus_tag="TCM_044847" /product="RNA polymerase Rpb7-like, N-terminal domain" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s16160.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044843t1" /inference="similar to AA sequence:ricco:29838.m001644" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7851t2" CDS join(19785609..19786113,19821142..19821167) /locus_tag="TCM_044847" /note="dbxref ricco:29838.m001644; paralog of Thecc1EG044843t1" /codon_start=1 /product="RNA polymerase Rpb7-like, N-terminal domain" /protein_id="EOY19674.1" /db_xref="TAIR:AT4G14660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HDY5" /translation="MFLKVQLPWNVIIPADSLGAKGLMLQKAIVVRLLDDFACKKATK DLGYFIAVTTLESIGDGKVRQNTGDVLFPVVFSGITFKMFRGEILEGVVHKILKHGVF LRCGPVQNIYLSHLKMPDYHYVPGENAIFMNEKHSKIEKDVVVRFIVIGTKWLEAERE FQALVSLEGDYLGPVS" gene complement(19786670..19791361) /locus_tag="TCM_044848" /note="dbxref CacaoGD:Thecc1EG044848" mRNA complement(join(19786670..19787662,19787762..19788605, 19788719..19788729,19788911..19791361)) /locus_tag="TCM_044848" /product="Leucine-rich repeat receptor-like protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008436001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044853t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s14960.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14618t00001" CDS complement(join(19787295..19787662,19787762..19788605, 19788719..19788729,19788911..19790996)) /locus_tag="TCM_044848" /note="paralog of Thecc1EG044853t1" /codon_start=1 /product="Leucine-rich repeat receptor-like protein kinase family protein, putative" /protein_id="EOY19675.1" /db_xref="Phytozome:POPTR_0019s14960.1" /db_xref="TAIR:AT1G35710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9INP4" /translation="MASFLIPFQVLFFLMLMPLLSSNVFASLTAAAPAKEAETLLKWK ASLDNKSQTLLSSWLGDSHCNWVGITCDKAGSITNLSLPNYEEGLRGTLHSLNFFSFP KLMNLQLRNNSLYGPIPSHIGNLSKLIFLDLSYNNFSGNIPSEICLLKSLKVIFLRNN MISGSIPQEIGSLSSVSEIFFNDNNLSGPIPTSIGSLHNLTRLDVSVNDISGNIPQEI GRLSSATVILFRENNLSGSIPASIGSLHNLLRLDLGRNSLTGRIPREVGMLRSLQLLD FSGNYLTGPIPESIGNLSKLPWLYLYGNELSGPIPSEIGQLGSLSVLQLFGNYLTGAI PPSIGNLTKLFNLLLRQNMLSGSIPQEVGMLKSLSVLELSENNFSGSIPASIRNLTKL TGLFLSSNNLSGSIPPTFSNFIVLEYLQLSDNRLSGQLPENVCHGGRLTYLAVMNNNL TGQIPPSLRNCKSLYRVRLEGNHLTGNLSEAFGVYPNLNFIALSNNKFYGELSPKWGQ CHNLTSLQISNNNISGKIPPELEHATQLQELDLSSNHLIGEIPKELGSLSLMFRLLLS GNQLSGKIPSEIGVLSNLAHLNLASNNLSGPIPNQLGECLKLLILNLSRNKLEEIIPF SLSYIDGLQSLDLSQNLLVGAIPQQLGKLQTLEILDLSHNMLNGSIPIAFNGLQSLTI VNLSYNQLEGPIPCVFYAFHEASFDALRNNKGLCGNATGLMPCAPITSNKISHKKSSR VIILVVLPLLGILLLIFPLAGGFLILRRKIRTRKSESREAQLGDIFTVLGYDGRILYE NILEATEDFSSNHCIGSGGYGNVYKAVLPTGQVVAVKKLHQHEDSMLINNLKAFESEI HALTEIRHRNIVKLHGFCSHSKHSFLVYEFVERGSLRMILSNNKEAEVLDWNKRLNVV KGLANALSYMHHDHSPPIIHRDISSNNVLLDLEYEAHVSDFGTARLLKPDSSNWTSFA GTIGYTAPELAYTMKVDEKCDVYSFGMLTMEILMGRHPGDLISCLSSSPLAPEANDQQ ILLKDVIDQRLSPPVKQVAEDVVFATKLAFACLNGNPKFRRTMGQVAQAFTCPSPQLP KPFSTTKLGELFGD" mobile_element complement(19788620..19788911) /note="source:CACAO_M_E71352_F43_scaffold_10 1 292" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19797320..19797381) /note="source:scaffold_3_CACTA_0384 154 212" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19811999..19812094 /note="source:CACAO_M_S_E16386_F9_scaffold_2 2044 2139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19812222..19812557) /note="source:scaffold_10_CACTA_0131 4084 4420" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19812591..19812664) /note="source:scaffold_5_CACTA_0593 3401 3474" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19812852..19812916 /note="source:scaffold_2_CACTA_0280 205 269" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19812948..19813856 /note="source:CACAO_M_E57409_F8_scaffold_9 1 904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19813801..19813901 /note="source:scaffold_5_CACTA_0596 1744 1844" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19814021..19820164 /note="source:INTACT20_F8_scaffold_7-int 869 6942" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19820526..19821562 /locus_tag="TCM_044852" /note="dbxref CacaoGD:Thecc1EG044852" mRNA 19820526..19821562 /locus_tag="TCM_044852" /product="RNA polymerase Rpb7-like, N-terminal domain" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s16160.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044847t1" /inference="similar to AA sequence:ricco:29838.m001644" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5844t1" gene complement(19820558..19841081) /locus_tag="TCM_044853" /note="dbxref CacaoGD:Thecc1EG044853" mRNA complement(join(19820558..19821499,19821788..19822147, 19822247..19825079,19840854..19841081)) /locus_tag="TCM_044853" /product="Leucine-rich repeat receptor-like protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29666.m001469.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044848t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s14960.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS 19820637..19821167 /locus_tag="TCM_044852" /note="dbxref ricco:29838.m001644; paralog of Thecc1EG044847t1" /codon_start=1 /product="RNA polymerase Rpb7-like, N-terminal domain" /protein_id="EOY19676.1" /db_xref="TAIR:AT4G14660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HDY5" /translation="MFLKVQLPWNVIIPADSLGAEGLMLQKAIVVRLWDDFACKKATK DLGYFIAVTTLESIGDGKVRQNTGDVPFPVVFSGITFKMFRGEILEGVVHKILKHGVF LRCGPVQNIYLSHLKMPDYHYVPGENAIFMNDKHSKIEKDVVVRFIVIGTKWLEAERE FQALFSLEGDYLGPVS" CDS complement(join(19821402..19821499,19821788..19822147, 19822247..19825064)) /locus_tag="TCM_044853" /note="paralog of Thecc1EG044848t1" /codon_start=1 /product="Leucine-rich repeat receptor-like protein kinase family protein, putative" /protein_id="EOY19677.1" /db_xref="Phytozome:POPTR_0019s14960.1" /db_xref="TAIR:AT4G08850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9INP4" /translation="MLVPLQSSNVFTSLAAAAPAKEAETLLKWKASLDNRSQTFLSSW LGDSHCNWVGITCDKAGSTTNLSLPNYGFRGTLHLLNSFSFPNLIGLHLPNNALYGPI PSHIGNLSKLIFLDLSFNNFTGNIPPEICLLKSLQWISLAGNKISGSIPQKIQRLSSV TNILFHENYLNGSIPASVGSMHTLMRLDLGSNRLTGPIPGEVGMLRSLLYLDFSRNYL IGPIPESIGNLSKLVWLYLYSNKLSGSLPGEVGRLRSLSVMQLSTNNLIGVIPTSIGN LTNLSSLTLDGNMISGQIPASIGNLASLSILYIQQNMFSGSIPQEVGLLKSLTELSVA LNMISGQIPASIGNLTKLTILSFTSNNLSGSIPPTFSNFIVLENLQLSDNHLSGQLPE NVCHGGRLTYLAVMNNNLTGQIPSSLRNCKSLYRVRLEGNHLTGNLSEAFGVYPNLNF IALSNNKFYGELSPKWGQCHNLTSLQISNNNISGKIPPELEHATQLQELDLSSNHLIG EIPKELGSLSLMFRLLLSGNQLSGKIPSEIGVLSNLAHLNLASNNLSGPIPNQLGECL KLLILNLSRNKLGEIIPFSLSYIYGLQSLDLSQNLLVGAIPQQLGKLQTLEILDLSHN MLNGSIPIAFNGLLSLTIVNLSYNQLEGPIPNLKAFHEASFDALRNNKGLCGNATGLM PCAPITSNKISHKKSSRVIILVVLPLLGILLLTFTLAGGFLILRRKIQTRKSESREAQ LGDIFTVLGYDGRILYENILEATEDFSSNHCIGSGGYGNVYKAVLPTGQVVAVKKLHQ HEDSMLINNLKAFESEIRALTETRHRNIVKLHGFCSHSKHSFLVYEFVERGSLRMILS NNQEAEVLDWNKRLNVVKGLANALSYMHHDHSPPIIHRDISSNNVLLDLEYEAHVSDF GTARLLKPDSSNWTSFAGTIGYTAPELAYTMKVDEKCDVYSFGMLTMEILMGRHPGDL ISCLSSSPLAPEANDQQILLKDVIDQRLSPPVKQVAEDVVFATKLAFACLNGNPKFRP TMGQVAQAFTCPSPQLPKPFSTTKLGELFELAYTFSMTEKCDVCSFCMLTLEIANCDH VAC" mobile_element complement(19829485..19832439) /note="source:CACAO_M_E71351_F72_scaffold_10 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19832548..19845531) /locus_tag="TCM_044855" /note="dbxref CacaoGD:Thecc1EG044855" mRNA complement(join(19832548..19832802,19841351..19841690, 19841946..19842635,19842738..19845531)) /locus_tag="TCM_044855" /product="Leucine-rich repeat receptor-like protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s14960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044848t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s14960.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS complement(join(19841437..19841690,19841946..19842635, 19842738..19845045)) /locus_tag="TCM_044855" /note="paralog of Thecc1EG044848t1" /codon_start=1 /product="Leucine-rich repeat receptor-like protein kinase family protein, putative" /protein_id="EOY19678.1" /db_xref="Phytozome:POPTR_0019s14960.1" /db_xref="TAIR:AT1G35710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9INP4" /translation="MLYILHKFLAILSSQPNLQQLIKTLSTIQIMASFLIPFQVLFFL MLVPLQSSNVFASLTAAAPAKEAETLLKWKASLDNKSQTLLSSWLGDSHCNWLGITCD EVGSITNLTLPNYEEGLIGTLHSLNFFSFPKLMSLELRNNSLYGPIPSHIGNLSKLIF LDLSYNNFSGNIPPEICLLKSLELISLSNNRINGSIPQEIGRLSSISYIFFYDNSLSG PIPTSIGSLHNLTALDLSRNKLNGSIPASIGSLHNLTGLNLSGNKLNGSIPASIGSLH NLTGLNLSGNKLNGSIPASIGSLHNLMQLVLGNNSLSGHVPGEVGMLRSLGVLDFSSN YLTGPIPESIGNLSKLAELYLYGNELTGSIPSEIGQLGSLLLLQLLSNYLTGVIPLSI GNLTSLSNFKLNQNMFSGSIPQEVGMLKSLSVLELTENNFSGSIPASIGNLTKLTGLL LTSNNLSGSIPPTFSNFTLLEYFQLSDNHLSGQLPENVCRGGRLTYLAVMNNNLTGQI PPSLRNCKSLYRVRLEGNHLTGNLSEAFGVYPNLNFIALSNYKFYGELSPKWGQCHNL TSLQISNNNIFGKIPPELENATQLQELDLSSNHLIGEIPKELGSLSLMFRLLLSGNQL SGKIPSEIGVLSNLAHLNLALNNLSGPIPNQLGECLKLLFLNLSRNKLGESIPFSLSY IYGLQSLDLSQNLLVGAIPQQLGKLQTLEILDLSHNMLNGSIPIAFNGLQSLTIVNLS YNQLEGPIPNLKAFHEASFDALRNNKGLCGILLLIFTLAGGFLILRRKIQTRKSESRE AQLGDIFTVLGYDGRILYENILEATEDFSSNYGIGSGGYGNVYKAVLPTGQVVAVKKL HQHEDSVLINNLKAFESEIHALTEIRHRNIVKLHGFCSHSKHLFLVYEFVERGSLRMI LSNNEEAVELDWNKRLNVVKGLANALSYMHHDHSPPIIHRDISSNNILLDLDYEAHVS DFGTARLLKPDSSNWTSFAGSIGYTAPAPEANDQEILLKDVIDQRLSRPVRQVAEDVV SATKLAFACLNGNPKFRPTMGQVAQAFTRPSPQLTKPFSTIKLGELFGDKVSG" gene 19846176..19854750 /locus_tag="TCM_044856" /note="dbxref CacaoGD:Thecc1EG044856" mRNA join(19846176..19846321,19850675..19851943, 19852689..19852816,19854016..19854750) /locus_tag="TCM_044856" /product="Gag protease polyprotein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028587t1" /inference="similar to AA sequence:Phytozome:POPTR_1126s00200.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc7287t2" CDS join(19846301..19846321,19850675..19851943, 19852689..19852816,19854016..19854022) /locus_tag="TCM_044856" /note="paralog of Thecc1EG028587t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY19679.1" /db_xref="Phytozome:POPTR_1126s00200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBB7" /translation="MNQGVYVSTMPPRRGRPPLYRSVGRGRGRARLSQPDPVERESAA PTFRAAPAVEPTEIPPPPTATPGVHAMSLEAVQALTAFLNVIMGQAQAGRVPHTVPPA VSPVPPPPPLVPPPVPDVSISKKLKEARQLGCTSFIGDLDATAAKDWITQVTETFVDM KLDDDMKLMVATRLLEKRARTWWSSVKSRSITSLTWIDFLQEFDGQYYTYFHQKEKKR EFLSLQQGNLTIEEYEARFNELMSYVPDLVKSEQDQASYFEEGLRNEIRERMTVTGRE PHKEVVQMALRAEKLTNENRRMRAEFAKRRNPNVSSSQLPKRGKDTFASENTVSVPVI SPRPPLSQLQQRPPRFNRSGMSSTSEKSFGGLNKCEKCGRYHVGECWGIRCFHCDQSG HIRSDCPQLGRATVAAPSPLTHTDMQRRDSSRVHPRQGFEKSLKDDIAPNGIIESIKP RTSSNRNFKVKLRVSQFKDDSKWW" mobile_element 19847518..19848464 /note="source:CACAO_M_E56826_F244_scaffold_8 4226 5171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19852142..19853179) /note="source:scaffold_4_CACTA_0503 564 1603" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19853180..19853363 /note="source:INTACT615_F273_scaffold_2-int 5310 5568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19853809..19855576) /note="source:scaffold_4_CACTA_0503 3236 5002" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19855677..19856924) /note="source:CACAO_M_E59164_F88_scaffold_9 6669 7912" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19856925..19857891) /note="source:CACAO_M_S_E118867_F115_scaffold_9 1990 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19858303..19859075 /note="source:CACAO_M_E35241_F115_scaffold_5 1388 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19862629..19863262) /note="source:CACAO_M_E44805_F115_scaffold_6 1 632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19863263..19863305 /note="source:CACAO_M_E58962_F13_scaffold_9 12620 12669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19863264..19867018 /note="source:CACAO_M_E4368_F316_scaffold_2 1753 5465" /mobile_element_type="retrotransposon:LTR/Copia" assembly_gap 19869137..19879136 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 19879137..19882395 /note="source:INTACT918F_F377_scaffold_6-int 98 3428" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 19894183..19894227 /note="source:INTACT127_F12_scaffold_6-int 10803 10847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19894216..19894778 /note="source:CACAO_M_E13038_F22_scaffold_3 9863 10291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19894767..19894856 /note="source:CACAO_M_S_E14583_F322_scaffold_2 7285 7378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19894782..19895075) /note="source:CACAO_M_E3248_F5_scaffold_1 18551 18838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19895075..19895868) /note="source:CACAO_M_E14347_F12_scaffold_3 8749 9540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19895892..19895949) /note="source:INTACT93F_F345_scaffold_2-int 16823 16876" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19902782..19904743) /note="source:CACAO_M_E10675_F96_scaffold_2 1 1974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19904744..19907082) /note="source:CACAO_M_E43348_F5_scaffold_5 18073 20377" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19908892..19908918 /note="source:CACAO_M_S_E6027_F12_scaffold_2 2070 2096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19910522..19912426 /note="source:INTACT1404F_F12_scaffold_9-int 1 1907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19911235..19912815 /note="source:CACAO_M_E5702_F90_scaffold_2 848 2444" /mobile_element_type="retrotransposon:LTR/Copia" gene 19911590..19912365 /locus_tag="TCM_044857" /note="dbxref CacaoGD:Thecc1EG044857" mRNA 19911590..19912365 /locus_tag="TCM_044857" /product="Integrase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028116t1" /inference="similar to AA sequence:Phytozome:Glyma11g25770.1" /note="quality class is strong-expresste, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5563t1" CDS 19911653..19912144 /locus_tag="TCM_044857" /note="paralog of Thecc1EG028116t1" /codon_start=1 /product="Integrase, putative" /protein_id="EOY19680.1" /db_xref="Phytozome:Glyma11g25770.1" /translation="MAQQKTIVAEGQSTNRPPLFDGSNYPYWSTRMSIYIRAIDYEMW DVITDGPFMPSTVNVVTNELMPKPRSKWTKAETKKIQINFKAINTLHCALTPTEFNKV SSCTTVKQVWEKLRIIHEGTSQVNESKIALLTHSYEMFKMEHGEDITSMFDRFTNITN KLS" mobile_element complement(19912427..19915004) /note="source:CACAO_M_E73087_F12_scaffold_10 7862 9773" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19915004..19917669) /note="source:CACAO_M_E3248_F5_scaffold_1 12371 15056" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19915092..19915568 /locus_tag="TCM_044859" /note="dbxref CacaoGD:Thecc1EG044859" mRNA 19915092..19915568 /locus_tag="TCM_044859" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene26514.15" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043869t1" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; inference alignment:Velvet:11:TSA:cacao3v1Svsc4Loc6586t1_G2" CDS 19915141..19915452 /locus_tag="TCM_044859" /note="paralog of Thecc1EG043869t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19681.1" /translation="MNCYECKKPGHFKSECPLLKDETPKKNKKSKKAMVAVAWSDSDT SSFETDDEKSEERANICLMVQEEKQRYPHPLVLILMMIYKMSMSAFMMNLKSFSQNTN H" gene 19915880..19918502 /locus_tag="TCM_044860" /note="dbxref CacaoGD:Thecc1EG044860" mRNA join(19915880..19917345,19917529..19918502) /locus_tag="TCM_044860" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene26514.15" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040667t1" /inference="similar to AA sequence:Phytozome:Glyma09g26090.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc4Loc7049t2_G2" CDS join(19915963..19917345,19917529..19917663) /locus_tag="TCM_044860" /note="paralog of Thecc1EG040667t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19682.1" /db_xref="Phytozome:Glyma09g26090.1" /translation="MTGHEMLFAQLDKRKGRTISFGDDSKGRIHGIGTVGKNSQTQIS HVLLVKGLKHNFLSISQLCDKGLRVCFDSTKCEVIDMSTNKISFIGNRLKNMHVIFLE VLKVNSEVCLIANAENDSWLWHRRLGHVSMNTMSKLIKKNLITGLLELKFENDRICDA CQLGKQVRTSFKSKKIVSTSRPLELLHIDLFGPISTTSLGGKSYGFVIVDDYSRYTWV YFLAHKNAALQAFLSHYKKVENEKGLAIVSIKSDHGGEFENDEFEKFCNEKGLDHNCS APRTPQQNGVVERKNQTLKEMARTMLCENNLLKYLWAEVVNTTTYILNRVLIRLLISK TPYELYKGRKPNISHLKSFCCKCFVLNNGKQPLGKFDAKSDEAIFLGYALKSKAYRGF NKRTLTVEESIHVVFDESNALQKKVHDDDDDVEVLEKQMKEMSLENNKNNEESSPKRE DETSPLENLQRESLIMAMQEELDQFTRSHVWSLVPRPSNHPIVGTKWVFRNKVDD" mobile_element 19917668..19920086 /note="source:INTACT118_F5_scaffold_9-int 2758 5032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19920087..19920658 /note="source:CACAO_M_E14537_F4_scaffold_3 5395 5965" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19920659..19920861 /note="source:CACAO_M_E50816_F322_scaffold_7 1 203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19921464..19922455 /note="source:CACAO_M_E70226_F322_scaffold_10 1820 2811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19922456..19924439 /note="source:INTACT93F_F345_scaffold_2-int 567 2582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19924440..19927454) /note="source:INTACT1295F_F378_scaffold_7-int 9227 11416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19926622..19927578 /note="source:CACAO_M_E56172_F378_scaffold_8 2241 3163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19927579..19928480) /note="source:INTACT170_F12_scaffold_5-int 1178 2081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19927643..19928779 /note="source:INTACT329_F199_scaffold_2-int 1057 2212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19927821..19929728) /note="source:scaffold_2_CACTA_0262 14560 16490" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19928976..19933153 /note="source:INTACT329_F199_scaffold_2-int 2455 7626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19932627..19935331 /note="source:CACAO_M_E14537_F4_scaffold_3 5391 8084" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19935324..19935515 /note="source:INTACT329_F199_scaffold_2-int 6238 6428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19935343..19936651) /note="source:scaffold_2_CACTA_0262 7397 8703" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19936631..19936729) /note="source:INTACT146F_F14_scaffold_2-int 14331 14424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19936652..19937188 /note="source:INTACT170_F12_scaffold_5-int 1179 1714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19937384..19939454) /note="source:CACAO_Mariner_E180_scaffold_6 6242 8287" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 19939443..19940957 /note="source:INTACT118_F5_scaffold_9-int 3929 5448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19940558..19940987) /note="source:CACAO_M_E5326_F22_scaffold_2 20187 20638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19940986..19941098) /note="source:INTACT597_F267_scaffold_2-int 5796 5908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19941105..19941402) /note="source:INTACT597_F267_scaffold_2-int 5967 6263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19941403..19944338) /note="source:CACAO_M_E71102_F246_scaffold_10 1 2936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19944243..19944350 /note="source:CACAO_M_S_E100312_F82_scaffold_9 6476 6584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19944339..19944554) /note="source:INTACT597_F267_scaffold_2-int 5756 5971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19944340..19944590 /note="source:INTACT170_F12_scaffold_5-int 2185 2425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19944555..19945876) /note="source:CACAO_M_E14347_F12_scaffold_3 4050 5375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19945852..19945941) /note="source:INTACT676_F297_scaffold_3-int 2534 2624" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19945942..19953972) /note="source:CACAO_M_E57660_F369_scaffold_9 2430 10510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19953944..19954163 /note="source:CACAO_M_E5800_F12_scaffold_2 9975 10188" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19954132..19955422) /note="source:INTACT145_F153_scaffold_5-int 1 1268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19955423..19958025 /note="source:CACAO_M_E35511_F5_scaffold_5 16140 18679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19958020..19962259 /note="source:CACAO_M_E50198_F12_scaffold_7 5868 10170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19963669..19964417 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19964537..19965883 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5808 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19968780..19971012) /note="source:CACAO_M_E71075_F7_scaffold_10 737 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19971013..19972179 /note="source:CACAO_M_E43428_F369_scaffold_5 1 1274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19972178..19974153 /note="source:CACAO_M_S_E5962_F33_scaffold_2 954 2911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19974149..19976106 /note="source:CACAO_M_S_E31774_F7_scaffold_3 2368 4326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19974154..19974635 /note="source:CACAO_on_S_E390_scaffold_9 11838 12287" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19976107..19979039) /note="source:CACAO_M_E71084_F172_scaffold_10 1 2933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19979040..19979098 /note="source:INTACT405F_F91_scaffold_4-int 7315 7368" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19979041..19979986) /note="source:CACAO_M_E65050_F7_scaffold_9 4979 5954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19979987..19983902) /note="source:CACAO_M_S_E121311_F85_scaffold_10 4979 10154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19994157..19994286) /note="source:CACAO_M_S_E121311_F85_scaffold_10 4855 4971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19994284..19994810) /note="source:CACAO_M_E85507_F96_scaffold_11 9391 9922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20000971..20002971) /note="source:CACAO_M_E45504_F98_scaffold_6 6611 8610" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20001618..20007215) /locus_tag="TCM_044868" /note="dbxref CacaoGD:Thecc1EG044868" mRNA complement(join(20001618..20002942,20007197..20007215)) /locus_tag="TCM_044868" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400017105.8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018243t1" /inference="similar to AA sequence:Phytozome:Glyma04g32860.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc4Loc2551t1" CDS complement(20001720..20002931) /locus_tag="TCM_044868" /note="paralog of Thecc1EG018243t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19683.1" /db_xref="Phytozome:Glyma04g32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AGW4" /translation="MYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQP LPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVY VDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTGGQSERTIQT LEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPVGWLEVG ERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVLPTK GVMRFGKKGKLSPRYIGPFEILDKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPS HVIRYETIQLQDDLTYEEQPVAILDRQVKKLRSKDVASVKVLWWNHTSEEVTWEAEDE MRTKHPHLFDM" mobile_element complement(20003240..20003609) /note="source:CACAO_M_E69217_F98_scaffold_9 5581 5950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20003988..20004263) /note="source:INTACT471_F7_scaffold_4-int 4583 4860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20005152..20005475 /note="source:CACAO_M_E5000_F96_scaffold_2 5814 6137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20005933..20007048) /note="source:CACAO_M_E45504_F98_scaffold_6 2530 3644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20007149..20011594 /note="source:CACAO_M_S_E32051_F7_scaffold_3 4440 8917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20014415..20014838) /note="source:INTACT242_F12_scaffold_1-int 3295 3698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20015578..20017061) /note="source:CACAO_M_E3248_F5_scaffold_1 1650 3090" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20017895..20020680) /note="source:CACAO_M_E13091_F44_scaffold_3 1 2858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20020682..20022005) /note="source:CACAO_M_S_E65716_F44_scaffold_5 4731 6054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20022006..20024128 /note="source:INTACT695_F301_scaffold_5-int 8467 10595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20024148..20024644) /note="source:CACAO_M_E14347_F12_scaffold_3 14089 14585" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20024642..20027320) /note="source:CACAO_M_E14312_F12_scaffold_3 4324 9570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20027334..20029242 /note="source:CACAO_M_E43348_F5_scaffold_5 15484 17365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20029207..20029247) /note="source:CACAO_M_E59641_F12_scaffold_9 1727 1766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20029248..20033983 /note="source:CACAO_M_E70396_F44_scaffold_10 6207 10958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20033984..20037203) /note="source:CACAO_M_E3248_F5_scaffold_1 12577 15325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20037204..20047043) /note="source:INTACT498_F231_scaffold_5-int 1 9798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20047044..20050417) /note="source:CACAO_M_E3248_F5_scaffold_1 9209 12581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20050420..20050722 /note="source:CACAO_M_E69310_F12_scaffold_9 7826 8128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20050722..20052887) /note="source:INTACT242_F12_scaffold_1-int 2419 4546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20054059..20054549) /note="source:INTACT563_F255_scaffold_10-int 16856 17344" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20054542..20055625 /note="source:INTACT597_F267_scaffold_2-int 9971 11055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20055604..20056733) /note="source:INTACT563_F255_scaffold_10-int 3438 4562" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20056735..20059728) /note="source:CACAO_M_S_E121290_F7_scaffold_10 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20063861..20064239 /note="source:CACAO_M_E53587_F207_scaffold_8 2963 3331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20064223..20064438) /note="source:CACAO_M_E9978_F12_scaffold_2 1824 2035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20064419..20064439 /note="source:CACAO_M_E1841_F5_scaffold_1 22947 22977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20064440..20066886) /note="source:CACAO_M_E71058_F389_scaffold_10 1 2447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20066898..20068669) /note="source:CACAO_M_E9978_F12_scaffold_2 1 1777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20079154..20080513 /note="source:INTACT135F_F90_scaffold_2-int 5639 7032" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20081203..20082227) /note="source:INTACT300_F7_scaffold_5-int 3160 4179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20082318..20082984) /note="source:CACAO_M_E71411_F86_scaffold_10 1 670" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20085887..20085966 /note="source:INTACT280_F60_scaffold_5-int 8516 8595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20086816..20087061) /note="source:CACAO_M_E71058_F389_scaffold_10 1303 1592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20086911..20087063 /note="source:INTACT280_F60_scaffold_5-int 9228 9380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20090461..20090496 /note="source:CACAO_M_E1841_F5_scaffold_1 4634 4672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20092189..20093022 /note="source:CACAO_M_S_E14649_F328_scaffold_2 2984 3589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20094713..20094905 /note="source:CACAO_M_E14593_F323_scaffold_3 1 193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20095095..20098169) /note="source:CACAO_M_E71051_F323_scaffold_10 1 3075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20098170..20098473 /note="source:CACAO_M_S_E31774_F7_scaffold_3 5069 5373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20100125..20102757) /note="source:CACAO_M_E33213_F12_scaffold_4 8102 10708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20103128..20106033) /note="source:CACAO_M_S_E121275_F33_scaffold_10 1 2906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20108682..20109079 /note="source:CACAO_M_E1841_F5_scaffold_1 16067 16467" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20108915..20109126) /note="source:CACAO_M_E52617_F328_scaffold_7 4 215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20111760..20114707) /note="source:CACAO_M_E71038_F15_scaffold_10 1 2948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20114708..20117674 /note="source:CACAO_M_S_E109853_F60_scaffold_9 7360 10325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20120221..20120418 /note="source:CACAO_M_S_E109853_F60_scaffold_9 10316 10513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20120740..20121758 /note="source:CACAO_M_E58819_F24_scaffold_9 14299 15342" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20121399..20121889 /note="source:INTACT1432F_F101_scaffold_9-int 7486 8004" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(20121726..20122963) /note="source:INTACT39F_F22_scaffold_1-int 2041 3232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20122931..20124576 /note="source:CACAO_M_S_E109853_F60_scaffold_9 10509 12167" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20125944..20126034) /note="source:INTACT30F_F12_scaffold_1-int 14629 14717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20126039..20129786 /note="source:INTACT39F_F22_scaffold_1-int 3568 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20127930..20170844 /locus_tag="TCM_044875" /note="dbxref CacaoGD:Thecc1EG044875" mRNA join(20127930..20127944,20169026..20169182, 20169826..20170844) /locus_tag="TCM_044875" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012810t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.17 coverage" mobile_element 20129786..20130086 /note="source:INTACT39F_F22_scaffold_1-int 2070 2379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20130084..20130351) /note="source:CACAO_M_E86052_F15_scaffold_12 5884 6151" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20133273..20133740) /note="source:CACAO_M_E56778_F42_scaffold_8 3748 4215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20133738..20134801 /note="source:INTACT39F_F22_scaffold_1-int 2371 3563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20134132..20135572) /note="source:CACAO_M_E58819_F24_scaffold_9 14308 15717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20143044..20144942 /note="source:CACAO_M_E23048_F42_scaffold_4 1 1901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20144943..20147918) /note="source:CACAO_M_E71019_F15_scaffold_10 1 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20147919..20149116 /note="source:CACAO_M_S_E146486_F42_scaffold_12 1889 3090" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20149117..20149282) /note="source:scaffold_4_CACTA_0492 12240 12399" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20156952..20157736 /note="source:CACAO_M_S_E5046_F335_scaffold_1 2 788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20157734..20160980) /note="source:CACAO_M_E23040_F82_scaffold_4 1 3276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20160841..20161004 /note="source:CACAO_M_E49195_F17_scaffold_6 12084 12257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20161012..20161300) /note="source:CACAO_M_S_E109853_F60_scaffold_9 6227 6511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20161469..20162221 /note="source:CACAO_M_S_E100173_F15_scaffold_9 1 751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20162322..20164492 /note="source:CACAO_M_S_E32089_F15_scaffold_3 554 2733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20164503..20164574) /note="source:CACAO_M_E1841_F5_scaffold_1 20345 20416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20164568..20165688 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1480 2628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20166539..20170685 /note="source:CACAO_M_E57059_F42_scaffold_8 1 4141" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 20169832..20170599 /locus_tag="TCM_044875" /note="paralog of Thecc1EG012810t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19684.1" /translation="MSPRCEQPPFTRSVGRGRGRFQRRQLGAIEEESTASTIRVALAA EQTETPPHPPPPLPLTSIPAMPLGAVQALAAFFTTIAGQAQAGQALPTVPLAPLSVPP SPLLLPPLVLDVSDSKKLKEARQHSCVSFMGESDATVAKEVVRMALRAEKLANENRSL RAELAKRRNLSVSSSQPPKRGKDSSVSRSSRRCRNCGNYHVGPCRGPARCFRCDQPSH IRRDCPQLGRATVAAPSPPAHTNMQRRDSSRLQLRQG" mobile_element 20170677..20170751 /note="source:CACAO_M_S_E122136_F76_scaffold_10 1322 1385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20170683..20170741) /note="source:CACAO_M_E13363_F273_scaffold_3 11023 11081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20170731..20170943 /note="source:CACAO_M_E13363_F273_scaffold_3 3526 3687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20170753..20171558) /note="source:INTACT135_F42_scaffold_4-int 5527 6334" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20171195..20179464) /locus_tag="TCM_044877" /note="dbxref CacaoGD:Thecc1EG044877" mRNA complement(join(20171195..20171374,20172365..20172450, 20174055..20174438,20174523..20175041,20175132..20176689, 20176882..20177253,20177332..20177843,20178157..20178627, 20178724..20178910,20178984..20179464)) /locus_tag="TCM_044877" /product="DNA/RNA polymerases superfamily protein, putative" /inference="alignment:exonerate- protein:2:frave:gene21083.17" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018422t1" /note="quality class is strong-expresste, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.19 coverage" mobile_element complement(20171661..20172229) /note="source:INTACT135_F42_scaffold_4-int 4918 5489" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20172330..20179879) /note="source:CACAO_M_E5390_F15_scaffold_2 1862 9457" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(20172404..20172450,20174055..20174438, 20174523..20175041,20175132..20176689,20176882..20177253, 20177332..20177843,20178157..20178627,20178724..20178904)) /locus_tag="TCM_044877" /note="paralog of Thecc1EG018422t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein, putative" /protein_id="EOY19685.1" /db_xref="TAIR:ATMG00860.1" /translation="MPPRRERPPLARSVGRGRGRSQRHQPDTVEEESAASTIRAAPAA EQADSPPHSPSPQPPTVPSTTPLVPPPVQDVSISKKLKEARQLGCVSFTGELDATVAK DWINQVPETLSDMRLDDDMKLMVATRLLEKRARTWWNSVKSRSATPQTWSDFLREFNG QYFTYFHQKEKKREFLSLKQGNVTVEEYETRFNELMLYVPDLVKSEQDQASYFEEGLH AEIVGIIIVGYVESQQDVSNVDRRVILGVICPRLGRATVVSSSSPARTDIQRRDSSRL PPRQGVAIRSGVESNTPAHPPSRPQTRTSTRVFTVTEDEAQVRPGAVTGTMSLFDKDA YVLIDSGSDRSYVSTTFASIADRNLSPLEEEIVIHTPLGEKLVRNSCYRDCDVRLTAH RANVDCFRKEVVLRNSEGAEIVFVGKRRVLPSCVISAIKASKLVQKGYPAYLAYVIDT SKGEPKLEDVPIVSEFPDVFPDDLPGLPPDRELEFPIDLLSGTAPISIPPYRMAPAEL KELKGATVFSKVDLRSGYHQLRIKEQDVPKTTFRTRYGHYEFLVIPFGLTNAPAAFMD LMNRVFHPYLGKFVIVFIDDILVYSRDNDEHAAHLRIVLQTLREKQLYAKFSKCEFWL QEVVFLGHVVSRTGIYVDPKKVEAILQWEQPKTVTEIRSFLGLAGYYRRFVQGFSLIA APLTRLTRKGVKFVCDDVCENRFQELKNRLTSAPVLTLPVNGKGFVVYSDASKLGLGC VLMQDEKVVAYASRQLKRHEANYPTHDLELAAVVFALKIWRHYLYGEHCRIFTDHKSL KYLLTQKELNLRQRRWLELIKDYDLVIDYHPGKANVVADALSRKSSSSLAALQSCYFS ALIEMKSLGVQLRNGEDGSVLANFIVRPSLLNQIKDIQRSDDELRKEIQKLTDGGVSE FRFGEDNVLMFRDRVCVPEGNQLRQTIMEEAHSSAYALNPGSTKMYRTIRENYWWPGM KRDVAEFVAKCLVCQQVKAEHQRPVGTFQSLPVLEWKWEHVTMDFVLGLPRTQRGKDA IYEIVRLHGVLVSIVSDRDPRFTSRFWPKFQEALGTKLKFSTAFHPQTDGQSERTIQT LEDMLRACVIDFIGSWDRHLPLVEFAYNNSFQSSIGMAPYEALYERKCRTPLCWDEVG ERKLVSVELIELTNDKIKVIRERLKVAQDRQKSNADKQRKDLEFEIDDKVFLKVSPWK GVIRFAKRGKLNPRYIGPFRIIERIGPVAYRLELPPELDRIHNVFHVSMLKKYVPDPS HVLEAPPIELHDDLKFEVQPVSILDRKDRVLRNKSISMVKVLWKSARMEEMTWEVEHQ MRNQYPHLFVESGGEPSGKGKEVVPDE" mobile_element complement(20181592..20182251) /note="source:CACAO_M_E42514_F40_scaffold_5 10291 10950" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20182186..20182979) /note="source:CACAO_M_E49857_F85_scaffold_7 6178 6870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20183732..20184578 /note="source:INTACT74_F134_scaffold_5-int 9427 10216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20184684..20185971) /note="source:CACAO_M_E24475_F44_scaffold_4 7471 8734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20185966..20186112 /note="source:INTACT202_F170_scaffold_6-int 3935 4082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20186101..20186310) /note="source:INTACT277_F12_scaffold_9-int 9644 9852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20186392..20188289) /note="source:CACAO_M_E49857_F85_scaffold_7 5092 7622" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20188283..20196938) /note="source:CACAO_M_E69608_F15_scaffold_9 1 8567" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20196876..20196947 /note="source:INTACT1817F_F27_scaffold_11-int 479 549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20197773..20198161) /note="source:CACAO_M_E53587_F207_scaffold_8 2960 3337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20200645..20201663) /note="source:INTACT202_F170_scaffold_6-int 9925 10942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20201664..20210154 /note="source:CACAO_M_S_E82995_F85_scaffold_6 1 8433" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20210155..20215586) /note="source:CACAO_M_E4668_F85_scaffold_2 4835 10289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20215587..20215809) /note="source:INTACT779_F73_scaffold_9-int 2503 2723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20215910..20216487) /note="source:CACAO_M_E3336_F73_scaffold_1 1824 2401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20216588..20217867) /note="source:INTACT550_F73_scaffold_4-int 5285 6564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20217968..20220507) /note="source:CACAO_M_E3336_F73_scaffold_1 2651 5189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20220488..20220554) /note="source:INTACT674_F296_scaffold_6-int 3081 3146" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20220538..20220656) /note="source:INTACT550_F73_scaffold_4-int 1 119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20220657..20222823 /note="source:CACAO_M_E12329_F82_scaffold_3 5378 7551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20222780..20222832) /note="source:CACAO_M_E48910_F15_scaffold_6 2438 2490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20222815..20222856 /note="source:CACAO_M_S_E5046_F335_scaffold_1 4132 4174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20222822..20222851) /note="source:CACAO_M_E9395_F12_scaffold_2 15728 15757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20229637..20231414 /note="source:INTACT584_F15_scaffold_3-int 627 2402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20231515..20232152 /note="source:CACAO_M_S_E31650_F33_scaffold_3 2319 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20232008..20232175) /note="source:CACAO_M_E5899_F5_scaffold_2 1697 1866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20232150..20233543 /note="source:CACAO_M_E49857_F85_scaffold_7 640 2056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20233644..20234911) /note="source:CACAO_M_E14081_F316_scaffold_3 6496 7752" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20236626..20236775 /note="source:INTACT405F_F91_scaffold_4-int 7477 7622" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20236755..20237605 /note="source:CACAO_M_E58562_F246_scaffold_9 1080 1931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20238587..20239592) /note="source:CACAO_M_S_E6875_F7_scaffold_2 5688 6673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20240053..20240764 /note="source:CACAO_M_E12782_F33_scaffold_3 976 1690" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20241716..20242056 /note="source:CACAO_M_E49857_F85_scaffold_7 23537 23879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20242178..20242596 /note="source:CACAO_M_E44425_F33_scaffold_6 7767 8174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20243404..20243510) /note="source:CACAO_M_E14081_F316_scaffold_3 9574 9680" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20243416..20243660) /note="source:CACAO_M_E44425_F33_scaffold_6 5418 5661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20244091..20245120) /note="source:INTACT674_F296_scaffold_6-int 10811 11858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20248377..20251367) /note="source:CACAO_M_S_E121173_F7_scaffold_10 1 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20251524..20253789) /note="source:CACAO_M_S_E102910_F165_scaffold_9 446 2706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20253790..20256745) /note="source:CACAO_M_E70949_F33_scaffold_10 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20256746..20257411 /note="source:INTACT674_F296_scaffold_6-int 2266 2922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20260405..20261214 /note="source:CACAO_M_E44425_F33_scaffold_6 7774 8586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20261540..20262626 /note="source:CACAO_M_E44425_F33_scaffold_6 4661 5661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20262727..20262973 /note="source:CACAO_M_E44425_F33_scaffold_6 8751 8997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20263074..20264046 /note="source:INTACT901F_F95_scaffold_6-int 9468 10441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20264147..20264906) /note="source:INTACT901F_F95_scaffold_6-int 9418 10178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20265007..20265952 /note="source:INTACT901F_F95_scaffold_6-int 10526 11471" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20282103..20283218 /note="source:CACAO_M_S_E6875_F7_scaffold_2 5552 6665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20283242..20285467) /note="source:CACAO_M_E52889_F306_scaffold_8 882 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20285467..20285617 /note="source:CACAO_M_E49857_F85_scaffold_7 20684 20835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20285468..20285985) /note="source:CACAO_M_E50311_F328_scaffold_7 5809 6183" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20286093..20286318) /note="source:CACAO_M_E50311_F328_scaffold_7 5573 5800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20286400..20288712) /note="source:CACAO_M_E50311_F328_scaffold_7 3284 5579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20288704..20289592 /note="source:CACAO_M_E42509_F306_scaffold_5 2216 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20294484..20294855 /note="source:CACAO_M_E86361_F7_scaffold_15 7218 7583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20299948..20300680) /note="source:CACAO_M_E85187_F15_scaffold_10 1183 1915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20300781..20301913) /note="source:CACAO_M_E84129_F15_scaffold_10 1 1131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20301803..20301936 /note="source:CACAO_M_E27005_F15_scaffold_4 2626 2759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20301912..20302186 /note="source:INTACT296_F13_scaffold_9-int 13122 13430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20303015..20303453) /note="source:CACAO_M_E42395_F3_scaffold_5 6945 7383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20303454..20303972) /note="source:CACAO_M_E13757_F15_scaffold_3 2577 3095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20304249..20305316 /note="source:CACAO_M_E43590_F7_scaffold_5 7388 8455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20305551..20306563 /note="source:INTACT585_F12_scaffold_8-int 4188 5204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20306551..20308060) /note="source:INTACT1625F_F66_scaffold_10-int 8487 10000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20308061..20311006) /note="source:CACAO_M_E70914_F15_scaffold_10 1 2946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20311007..20311726) /note="source:INTACT845F_F369_scaffold_5-int 1 734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20312614..20313011 /note="source:CACAO_M_E1841_F5_scaffold_1 16067 16467" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20312847..20313054) /note="source:CACAO_M_E22484_F328_scaffold_3 8 215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20314882..20315895) /note="source:INTACT1625F_F66_scaffold_10-int 852 1863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20315828..20316655 /note="source:INTACT711_F307_scaffold_9-int 717 1539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20316253..20316755) /note="source:INTACT1625F_F66_scaffold_10-int 7861 8362" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20316750..20317810 /note="source:CACAO_M_E34534_F369_scaffold_5 7848 8448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20317808..20318892 /note="source:CACAO_M_E42395_F3_scaffold_5 6298 7384" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20318894..20320961) /note="source:INTACT1625F_F66_scaffold_10-int 5700 7759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20320962..20323934) /note="source:CACAO_M_E70904_F7_scaffold_10 1 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20323824..20323949 /note="source:INTACT189_F49_scaffold_5-int 13525 13652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20323935..20325370) /note="source:INTACT1625F_F66_scaffold_10-int 4208 5704" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20325371..20332461) /note="source:INTACT770_F327_scaffold_10-int 1 7091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20332462..20335288 /note="source:INTACT12_F107_scaffold_9-int 5147 7999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20335289..20342785) /note="source:CACAO_M_E70891_F369_scaffold_10 9533 17029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20342886..20352417) /note="source:CACAO_M_E70891_F369_scaffold_10 1 9532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20353014..20353076) /note="source:INTACT167_F5_scaffold_2-int 13913 13975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20353317..20353533) /note="source:INTACT189_F49_scaffold_5-int 18356 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20353533..20353843) /note="source:INTACT189_F49_scaffold_5-int 17858 18253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20353839..20354047) /note="source:scaffold_5_CACTA_0591 16626 16833" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20354387..20356705) /note="source:scaffold_5_CACTA_0591 7786 9533" /mobile_element_type="transposon:TIR/CACTA" gene complement(20356542..20356947) /locus_tag="TCM_044888" /note="dbxref CacaoGD:Thecc1EG044888" mRNA complement(join(20356542..20356614,20356713..20356947)) /locus_tag="TCM_044888" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(20356577..20356614,20356713..20356902)) /locus_tag="TCM_044888" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19686.1" /translation="MKQKPSIYKIRPFVVTYTFKSLVTQIPMSEAYLGSVINALAKPI YGRGEISASESRLIKSFAPDHNLLFVLRNVK" mobile_element complement(20358469..20358916) /note="source:INTACT701_F305_scaffold_10-int 13211 13593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20360412..20360899) /note="source:scaffold_3_CACTA_0382 10369 10854" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20360924..20361211) /note="source:INTACT224_F176_scaffold_8-int 4556 4831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20361227..20361521 /note="source:CACAO_M_S_E64023_F13_scaffold_5 16553 16847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20363151..20363293 /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20363287..20365874 /note="source:CACAO_M_E65050_F7_scaffold_9 1481 3953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20365866..20367537 /note="source:CACAO_M_E65050_F7_scaffold_9 4419 6054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20367530..20367701 /note="source:CACAO_M_E65050_F7_scaffold_9 6882 7052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20367702..20370627 /note="source:CACAO_M_E53507_F15_scaffold_8 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20370628..20375453 /note="source:CACAO_M_E3634_F15_scaffold_1 5917 10732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20377769..20380451) /note="source:CACAO_M_S_E121068_F335_scaffold_10 1 2683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20380473..20381385 /note="source:INTACT224_F176_scaffold_8-int 17628 18571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20381393..20386082) /note="source:INTACT41F_F338_scaffold_1-int 3261 7951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20386087..20387949) /note="source:CACAO_M_E35511_F5_scaffold_5 8739 10599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20387924..20388142) /note="source:CACAO_M_E45504_F98_scaffold_6 3403 3629" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20387946..20388111 /note="source:INTACT695_F301_scaffold_5-int 8055 8220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20388121..20390555 /note="source:INTACT1777F_F98_scaffold_10-int 1 3070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20388123..20390023) /note="source:INTACT136_F150_scaffold_10-int 9369 11297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20394530..20394616 /note="source:CACAO_M_E11098_F15_scaffold_2 9195 9233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20395420..20398107) /note="source:CACAO_M_S_E121059_F335_scaffold_10 1 2688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20398836..20399022) /note="source:INTACT39F_F22_scaffold_1-int 5660 5840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20400157..20401043) /note="source:CACAO_M_E24592_F195_scaffold_4 2986 3860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20402105..20403194 /note="source:scaffold_8_CACTA_0859 16513 17589" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20403841..20405679) /note="source:scaffold_5_CACTA_0591 7786 9384" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20406890..20414774) /note="source:INTACT1218F_F372_scaffold_6-int 754 8341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20414875..20418001) /note="source:CACAO_M_E65050_F7_scaffold_9 6856 10412" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20418364..20418970 /note="source:scaffold_4_CACTA_0494 2166 2745" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20419926..20420326 /note="source:CACAO_M_E5326_F22_scaffold_2 21956 22358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20423760..20425115) /note="source:CACAO_M_E65050_F7_scaffold_9 20325 21678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20425115..20428976 /note="source:INTACT39F_F22_scaffold_1-int 3568 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20428998..20430621 /note="source:CACAO_M_S_E6875_F7_scaffold_2 1359 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20431065..20431137 /note="source:CACAO_M_E22484_F328_scaffold_3 1 73" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20431083..20431783) /note="source:CACAO_M_E5326_F22_scaffold_2 21958 22673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20434386..20434472) /note="source:INTACT695_F301_scaffold_5-int 11854 11941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20437687..20437768 /note="source:CACAO_M_E5326_F22_scaffold_2 19807 19891" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20438247..20438389 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5895 6038" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20438504..20439982 /note="source:CACAO_M_E5326_F22_scaffold_2 21167 22673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20439943..20440000) /note="source:CACAO_M_E22484_F328_scaffold_3 1 58" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20445091..20445510) /note="source:INTACT407F_F356_scaffold_4-int 4589 5004" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20445511..20449248) /note="source:CACAO_M_S_E120986_F15_scaffold_10 1 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20449246..20451849) /note="source:CACAO_M_E70811_F53_scaffold_10 1 2604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20451850..20453930 /note="source:CACAO_M_E59025_F323_scaffold_9 1100 3200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20457188..20457930) /note="source:CACAO_M_S_E19200_F389_scaffold_3 1658 2379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20458097..20459492) /note="source:INTACT39F_F22_scaffold_1-int 2041 3559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20467747..20467872) /note="source:INTACT39F_F22_scaffold_1-int 5713 5840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20475648..20478470) /note="source:CACAO_M_E70722_F15_scaffold_10 1 2823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20479636..20482565) /note="source:CACAO_M_E70721_F80_scaffold_10 1 2930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20489873..20490676 /note="source:INTACT39F_F22_scaffold_1-int 3550 4333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20492556..20493732 /note="source:INTACT39F_F22_scaffold_1-int 6291 7469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20497429..20497609 /note="source:scaffold_3_CACTA_0382 10027 10205" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20497737..20497998 /note="source:scaffold_3_CACTA_0382 11895 12165" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20498562..20499233) /note="source:CACAO_M_E5899_F5_scaffold_2 19644 20323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20500608..20500750) /note="source:scaffold_3_CACTA_0382 2320 2462" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20501347..20501418 /note="source:CACAO_M_S_E83691_F15_scaffold_6 2783 2857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20504053..20505400 /note="source:CACAO_M_S_E65716_F44_scaffold_5 7129 8505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20506502..20506598) /note="source:scaffold_3_CACTA_0382 9769 9863" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20507498..20508356 /note="source:CACAO_M_E5899_F5_scaffold_2 20503 21393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20508486..20509291 /note="source:CACAO_M_E5899_F5_scaffold_2 21578 22378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20509289..20510027) /note="source:CACAO_M_E14230_F15_scaffold_3 2038 2780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20510128..20520085) /note="source:CACAO_M_E52180_F15_scaffold_7 1 9863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20520087..20520802) /note="source:CACAO_M_E49857_F85_scaffold_7 20295 21024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20520803..20522883 /note="source:scaffold_2_CACTA_0262 8226 11016" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20522884..20525872) /note="source:CACAO_M_S_E100714_F7_scaffold_9 1 2993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20525873..20526147 /note="source:scaffold_2_CACTA_0262 11012 11285" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20530240..20530770) /note="source:scaffold_2_CACTA_0260 1 532" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20535705..20535942 /note="source:INTACT180_F13_scaffold_3-int 3160 3398" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20536263..20537393) /note="source:CACAO_M_E58324_F9_scaffold_9 8803 9886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20537200..20537419 /note="source:CACAO_M_E70891_F369_scaffold_10 1226 1441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20537576..20538460 /note="source:CACAO_M_E58324_F9_scaffold_9 23500 24069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20539883..20539936) /note="source:CACAO_M_E47740_F12_scaffold_6 5625 5678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20539913..20540071 /note="source:scaffold_2_CACTA_0262 6198 6309" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20540074..20543159) /note="source:CACAO_M_S_E15214_F378_scaffold_2 1 3085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20543160..20543263) /note="source:scaffold_2_CACTA_0262 13506 13608" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20543264..20543420 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18607 18840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20544186..20544505 /note="source:scaffold_2_CACTA_0260 26 345" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20544498..20544548 /note="source:CACAO_M_E13604_F90_scaffold_3 11113 11162" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20545183..20545220) /note="source:CACAO_M_E58601_F7_scaffold_9 8817 8855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20545213..20545517 /note="source:scaffold_2_CACTA_0262 16717 16992" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20545216..20547091 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18597 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20547078..20547413 /note="source:CACAO_M_S_E15173_F4_scaffold_2 1696 2027" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20547397..20548241 /note="source:CACAO_M_S_E15173_F4_scaffold_2 5017 5862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20548573..20549035 /note="source:CACAO_M_S_E15173_F4_scaffold_2 8824 9300" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20549192..20549249 /note="source:CACAO_M_S_E119191_F3_scaffold_9 4319 4376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20549319..20549580 /note="source:CACAO_M_S_E15173_F4_scaffold_2 9296 9556" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20549632..20550377) /note="source:CACAO_M_E58601_F7_scaffold_9 10110 10861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20551213..20551954) /note="source:CACAO_M_E58601_F7_scaffold_9 8818 9547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20551952..20552020 /note="source:scaffold_2_CACTA_0262 8387 8456" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20553261..20555965 /note="source:INTACT524_F2_scaffold_3-int 895 3613" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20555951..20557289) /note="source:CACAO_M_E47740_F12_scaffold_6 4100 5429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20557288..20557363 /note="source:scaffold_2_CACTA_0262 8452 8527" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20558871..20561083) /note="source:CACAO_M_E13604_F90_scaffold_3 4797 7011" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20561084..20561983) /note="source:CACAO_M_E3876_F15_scaffold_1 2204 3101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20562084..20564263 /note="source:CACAO_M_E1224_F15_scaffold_1 904 3100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20564264..20564721) /note="source:CACAO_M_E13604_F90_scaffold_3 4344 4801" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20564713..20564805) /note="source:INTACT125_F13_scaffold_10-int 3325 3419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20564775..20565958) /note="source:CACAO_M_E13604_F90_scaffold_3 8600 9875" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20565945..20565990 /note="source:scaffold_2_CACTA_0260 490 535" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20565989..20566432 /note="source:CACAO_M_S_E15173_F4_scaffold_2 9546 9985" /mobile_element_type="retrotransposon:LTR/Copia" gene 20566705..20573489 /locus_tag="TCM_044903" /note="dbxref CacaoGD:Thecc1EG044903" mRNA join(20566705..20566746,20570854..20571613, 20573465..20573489) /locus_tag="TCM_044903" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" mobile_element complement(20567484..20569993) /note="source:CACAO_M_E86305_F7_scaffold_15 6225 8755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20569994..20570210) /note="source:scaffold_2_CACTA_0262 8011 8230" /mobile_element_type="transposon:TIR/CACTA" CDS 20570975..20571181 /locus_tag="TCM_044903" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19687.1" /translation="MVTKKGEKMRLLVTDFERKRREEATVVKGVTGWKKKKKKRGRDK KKEKEKKINGHDPIENKWAWPNRK" mobile_element 20571941..20572473 /note="source:CACAO_M_E639_F17_scaffold_1 8897 9456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20573476..20576040 /note="source:CACAO_M_E58324_F9_scaffold_9 7667 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20576030..20576425 /note="source:CACAO_M_E58601_F7_scaffold_9 9543 9938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20577254..20577494) /note="source:scaffold_2_CACTA_0262 15519 15755" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20578897..20578999) /note="source:INTACT224_F176_scaffold_8-int 15146 15248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20579678..20580674 /note="source:CACAO_M_E1841_F5_scaffold_1 9632 10619" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20580645..20580958) /note="source:INTACT93F_F345_scaffold_2-int 16823 17146" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20581075..20581129 /note="source:CACAO_M_E5326_F22_scaffold_2 3435 3490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20582069..20582643 /note="source:CACAO_M_E1841_F5_scaffold_1 25205 25801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20582644..20584685) /note="source:INTACT224_F176_scaffold_8-int 2323 3873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20584686..20587397) /note="source:CACAO_M_S_E120485_F15_scaffold_10 1 2712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20587288..20587415) /note="source:scaffold_3_CACTA_0388 5222 5351" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20587950..20588587) /note="source:INTACT280_F60_scaffold_5-int 9502 10143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20589019..20589452) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18139 18566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20591967..20594571) /note="source:CACAO_M_S_E120480_F345_scaffold_10 1 2605" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20594617..20596071) /note="source:CACAO_M_E14113_F106_scaffold_3 4124 5610" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20596071..20596463 /note="source:INTACT189_F49_scaffold_5-int 17862 18253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20596463..20596681 /note="source:INTACT189_F49_scaffold_5-int 18356 18574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20596682..20601785) /note="source:CACAO_M_S_E884_F44_scaffold_1 5847 10981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20598565..20602800 /note="source:CACAO_M_E69186_F33_scaffold_9 1887 6171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20603721..20609969 /note="source:INTACT183F_F349_scaffold_3-int 645 6895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20609891..20609983) /note="source:CACAO_M_S_E65716_F44_scaffold_5 9716 9808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20609966..20611003) /note="source:CACAO_M_E52270_F33_scaffold_7 8528 9567" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20610998..20611356 /note="source:INTACT18_F7_scaffold_4-int 3932 4290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20611357..20614132) /note="source:CACAO_M_E70497_F15_scaffold_10 1 2776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20614135..20614234 /note="source:CACAO_M_E52760_F33_scaffold_8 4292 4391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20614230..20615246) /note="source:INTACT774_F328_scaffold_5-int 4938 5994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20615247..20620315 /note="source:CACAO_M_E52905_F288_scaffold_8 1 10135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20621144..20621201 /note="source:CACAO_M_E14113_F106_scaffold_3 18696 18754" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20621198..20622926 /note="source:CACAO_M_E14113_F106_scaffold_3 18703 20435" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20622993..20623341 /note="source:CACAO_M_E14113_F106_scaffold_3 12427 12778" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20623589..20623647) /note="source:CACAO_M_S_E7818_F60_scaffold_2 23868 23924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20624006..20625123) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5990 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20626080..20626242 /note="source:INTACT657_F288_scaffold_5-int 1 163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20626234..20626482) /note="source:INTACT774_F328_scaffold_5-int 2268 2532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20626482..20628663 /note="source:INTACT657_F288_scaffold_5-int 766 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20628663..20629426) /note="source:INTACT695_F301_scaffold_5-int 11439 12202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20629513..20632931 /note="source:CACAO_M_E14113_F106_scaffold_3 10690 14203" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20632915..20633311 /note="source:CACAO_M_E5326_F22_scaffold_2 19797 20194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20633310..20633701 /note="source:INTACT189_F49_scaffold_5-int 17861 18253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20633701..20635197 /note="source:INTACT189_F49_scaffold_5-int 494 1997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20634997..20635733) /note="source:INTACT1373F_F385_scaffold_8-int 20344 21104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20635737..20640615) /note="source:CACAO_LINE_E_216_scaffold_8 2896 7774" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(20648002..20650988) /note="source:CACAO_M_S_E2086_F7_scaffold_1 1 2999" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20656071..20658790 /locus_tag="TCM_044911" /note="dbxref CacaoGD:Thecc1EG044911" mRNA join(20656071..20656280,20656721..20656998, 20658226..20658790) /locus_tag="TCM_044911" /product="NAC domain containing protein 57" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029392001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017681t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029392001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7657t4" CDS join(20656124..20656280,20656721..20656998, 20658226..20658504) /locus_tag="TCM_044911" /note="paralog of Thecc1EG017681t1" /codon_start=1 /product="NAC domain containing protein 57" /protein_id="EOY19688.1" /db_xref="Phytozome:GSVIVT01029392001" /db_xref="TAIR:AT3G17730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LSH5" /translation="MAPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLY KCEPWDLSEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVTCQN RAIGMKKTLVYYRGRAPQGVRTDWVMHEYRLDDKECEDTCGIQDSYALCRVFKKNGIC SEAEEQGQCSISLMECSQGVVNDSETMSPDLPLASPSGIEEEDKDDSWMQFITDDAWC SSNTSAMAGDEASNVVFTN" mobile_element 20660610..20660973 /note="source:scaffold_9_CACTA_0927 6380 6746" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20660974..20663686 /note="source:INTACT789_F335_scaffold_1-int 1 2799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20663550..20666411 /note="source:scaffold_2_CACTA_0259 925 3790" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20666404..20668960 /note="source:scaffold_9_CACTA_0927 8040 10612" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20668877..20668970) /note="source:scaffold_2_CACTA_0261 11420 11514" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20668960..20673128 /note="source:CACAO_M_S_E14932_F233_scaffold_2 8531 12870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20673129..20673394) /note="source:INTACT597_F267_scaffold_2-int 12687 12953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20673618..20675244) /note="source:INTACT597_F267_scaffold_2-int 10812 12516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20675217..20678422 /note="source:scaffold_9_CACTA_0927 11511 14716" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20678433..20681065) /note="source:CACAO_M_S_E120437_F231_scaffold_10 1 2633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20681066..20682348 /note="source:scaffold_9_CACTA_0927 5416 6693" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20682337..20683245) /note="source:INTACT280_F60_scaffold_5-int 1 918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20684664..20684748) /note="source:INTACT95_F143_scaffold_9-int 15217 15316" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20686139..20688696 /note="source:CACAO_M_S_E20068_F245_scaffold_3 1 2564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20688650..20688704) /note="source:INTACT95_F143_scaffold_9-int 14099 14154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20688692..20690318 /note="source:CACAO_M_E43985_F44_scaffold_5 1328 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20695264..20696317) /note="source:CACAO_M_E72867_F9_scaffold_10 385 1430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20696318..20707041 /note="source:CACAO_M_E5569_F322_scaffold_2 1 10563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20707042..20708398) /note="source:CACAO_M_E72867_F9_scaffold_10 20584 21975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20708409..20708472) /note="source:CACAO_M_E11191_F369_scaffold_2 10428 10491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20708468..20709671 /note="source:CACAO_M_S_E120403_F369_scaffold_10 126 1344" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20709668..20710317 /note="source:CACAO_M_E5429_F369_scaffold_2 9858 10507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20710318..20712740) /note="source:CACAO_M_E72867_F9_scaffold_10 18175 20590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20712733..20713257 /note="source:scaffold_5_CACTA_0591 9534 10059" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20712947..20714546) /note="source:CACAO_M_E42395_F3_scaffold_5 18995 20593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20714980..20715093) /note="source:CACAO_M_E42395_F3_scaffold_5 18889 19002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20715095..20715621) /note="source:INTACT597_F267_scaffold_2-int 8137 8661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20718442..20718791) /note="source:CACAO_M_E42395_F3_scaffold_5 18568 18898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20718792..20719432) /note="source:CACAO_M_E10298_F42_scaffold_2 2450 3091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20719433..20722346) /note="source:CACAO_M_E70453_F86_scaffold_10 1 2914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20722347..20724099 /note="source:CACAO_M_S_E66227_F42_scaffold_5 642 2400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20724200..20724245 /note="source:INTACT439_F42_scaffold_7-int 2260 2305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20724246..20724548 /note="source:CACAO_M_E52518_F323_scaffold_7 1 303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20724649..20725313 /note="source:CACAO_M_E56825_F323_scaffold_8 330 993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20725415..20725855) /note="source:CACAO_M_E57389_F323_scaffold_9 1974 2414" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20725856..20726680 /note="source:CACAO_M_E33199_F323_scaffold_4 1 823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20726781..20729381 /note="source:CACAO_M_E589_F323_scaffold_1 865 3465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20729382..20731375 /note="source:CACAO_M_E56825_F323_scaffold_8 1451 3438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20731376..20739044 /note="source:INTACT439_F42_scaffold_7-int 2485 10139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20739045..20740143) /note="source:CACAO_M_E42395_F3_scaffold_5 17485 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20740130..20742999) /note="source:CACAO_M_E42395_F3_scaffold_5 1550 4543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20743001..20745360 /note="source:CACAO_M_E13038_F22_scaffold_3 10686 13000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20745575..20746628 /note="source:CACAO_M_E13038_F22_scaffold_3 13076 14075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20746629..20749463) /note="source:CACAO_M_E70436_F15_scaffold_10 1 2835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20749702..20752363) /note="source:CACAO_M_S_E120403_F369_scaffold_10 1 2662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20752364..20752436 /note="source:CACAO_M_E11662_F12_scaffold_2 8428 8500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20752435..20753439) /note="source:CACAO_M_E42395_F3_scaffold_5 19592 20590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20753443..20756445) /note="source:CACAO_M_S_E4328_F7_scaffold_1 1 3002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20756450..20756908) /note="source:CACAO_M_E42395_F3_scaffold_5 19131 19589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20756906..20758580) /note="source:CACAO_M_S_E101224_F9_scaffold_9 5465 7151" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20758581..20758979) /note="source:INTACT597_F267_scaffold_2-int 17150 17568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20758980..20760015 /note="source:INTACT223_F175_scaffold_5-int 6208 7245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20763660..20764424) /note="source:CACAO_M_S_E101224_F9_scaffold_9 4715 5481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20764400..20768206) /note="source:CACAO_M_S_E101224_F9_scaffold_9 1 3843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20769241..20769365 /note="source:INTACT180_F13_scaffold_3-int 15590 15705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20770212..20770507 /note="source:INTACT1373F_F385_scaffold_8-int 1 296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20770351..20770557) /note="source:INTACT90_F13_scaffold_4-int 13054 13261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20771486..20771579) /note="source:CACAO_M_E69283_F22_scaffold_9 1 94" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20771715..20771833 /note="source:CACAO_M_E3884_F22_scaffold_1 13072 13180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20772029..20772322 /note="source:CACAO_M_E3884_F22_scaffold_1 13516 13796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20772325..20774027) /note="source:CACAO_M_E24592_F195_scaffold_4 1 1326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20774028..20779178) /note="source:INTACT41F_F338_scaffold_1-int 2607 8161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20780805..20780870 /note="source:INTACT224_F176_scaffold_8-int 19212 19277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20780871..20781479) /note="source:CACAO_M_E24592_F195_scaffold_4 4691 5299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20781472..20782565) /note="source:CACAO_M_E69283_F22_scaffold_9 1 1084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20782566..20786019 /note="source:INTACT312_F195_scaffold_2-int 878 3877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20786418..20786628 /note="source:CACAO_M_E3884_F22_scaffold_1 14035 14269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20788171..20788887) /note="source:INTACT714_F310_scaffold_9-int 11522 12273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20795718..20796404 /note="source:CACAO_M_E42809_F5_scaffold_5 5155 5841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20803741..20804417) /note="source:INTACT1308F_F98_scaffold_7-int 7366 8041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20804425..20805215 /note="source:CACAO_M_E35511_F5_scaffold_5 16919 17736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20813645..20813766 /note="source:CACAO_M_E1841_F5_scaffold_1 15539 15653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20816572..20818438) /note="source:CACAO_M_E42395_F3_scaffold_5 18995 20872" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20818880..20818998) /note="source:CACAO_M_E42395_F3_scaffold_5 18884 19002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20820148..20820202) /note="source:CACAO_M_E70891_F369_scaffold_10 14354 14410" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20822052..20827298) /locus_tag="TCM_044928" /note="dbxref CacaoGD:Thecc1EG044928" mRNA complement(join(20822052..20823083,20823219..20823279, 20824248..20824383,20825319..20825433,20825633..20825673, 20827017..20827298)) /locus_tag="TCM_044928" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog weak, intron is none, protein is utrpoor_complete" CDS complement(join(20823037..20823083,20823219..20823279, 20824248..20824383,20825319..20825433,20825633..20825673, 20827017..20827153)) /locus_tag="TCM_044928" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19689.1" /translation="MIYEHGSLVSIEVAANVAARPMPRVPDDDKRYFNGRKECGFHTN SGDDPWCRVCMIWAIYNLRNEISKEAHVVAYAIHLGAIEMYHDLKFMYWWLGLKKYVS DPLHVIRYDEVQLQDGLSYEEQLIAVLDQQVKHLHSMDIAMVNLPQFSWNLEPRFMQF SLQGGDEVIRHVGDMLVS" mobile_element 20832301..20832395 /note="source:CACAO_M_E72142_F322_scaffold_10 7008 7108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20833224..20834585 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5808 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20841410..20844237) /note="source:CACAO_M_E1192_F15_scaffold_1 1 2826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20844330..20844731 /note="source:INTACT695_F301_scaffold_5-int 817 1220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20850426..20851606 /note="source:INTACT126_F14_scaffold_3-int 14970 16139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20852277..20853624) /note="source:CACAO_M_E35511_F5_scaffold_5 8747 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20854713..20854823 /note="source:CACAO_M_E58819_F24_scaffold_9 22894 23005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20855606..20857780) /note="source:CACAO_M_E11098_F15_scaffold_2 13970 16142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20857773..20858302) /note="source:CACAO_M_E72867_F9_scaffold_10 20117 20629" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20860381..20863065) /note="source:CACAO_M_E70402_F369_scaffold_10 1 2685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20863066..20865284) /note="source:CACAO_M_S_E66915_F51_scaffold_6 1 2218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20865285..20865365) /note="source:scaffold_3_CACTA_0382 10591 10671" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20865357..20866822 /note="source:CACAO_M_S_E89272_F5_scaffold_8 6734 8217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20866823..20868239 /note="source:CACAO_M_E24592_F195_scaffold_4 55 1458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20868636..20873434 /note="source:CACAO_M_E24389_F60_scaffold_4 1 4802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20873433..20876226 /note="source:INTACT254_F60_scaffold_3-int 4375 7164" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20876242..20876704 /note="source:CACAO_M_E24389_F60_scaffold_4 1251 1712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20876704..20879254) /note="source:CACAO_M_S_E7818_F60_scaffold_2 9660 12222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20879255..20890212) /note="source:CACAO_M_E70396_F44_scaffold_10 1 10958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20890214..20891152) /note="source:CACAO_M_S_E7818_F60_scaffold_2 8715 9663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20891141..20892293) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6509 8051" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20894226..20895246) /note="source:INTACT558_F9_scaffold_9-int 8073 9092" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20895241..20895331 /note="source:CACAO_M_S_E1495_F60_scaffold_1 1872 1963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20896422..20897187 /note="source:CACAO_M_E1841_F5_scaffold_1 24460 25245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20897316..20900308) /note="source:CACAO_M_S_E1983_F7_scaffold_1 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20900309..20900850 /note="source:CACAO_M_E1841_F5_scaffold_1 16102 16663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20900850..20908896 /note="source:CACAO_M_S_E5670_F9_scaffold_2 3955 12057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20909336..20910005 /note="source:CACAO_M_S_E109853_F60_scaffold_9 15224 15904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20910352..20911157 /note="source:CACAO_M_E1841_F5_scaffold_1 14357 15161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20916282..20918811) /note="source:CACAO_M_E1841_F5_scaffold_1 11403 13929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20918790..20919059) /note="source:CACAO_M_E42485_F15_scaffold_5 1 236" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20925045..20925088) /note="source:CACAO_M_S_E90022_F9_scaffold_8 16338 16382" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20925741..20963747 /locus_tag="TCM_044941" /note="dbxref CacaoGD:Thecc1EG044941" mRNA join(20925741..20926306,20927727..20927867, 20930702..20931224,20935389..20935580,20937504..20937602, 20939699..20939836,20940336..20940584,20943460..20943708, 20945066..20945211,20955505..20955582,20956426..20956555, 20961291..20961537,20961707..20961869,20963090..20963747) /locus_tag="TCM_044941" /product="Cyclic nucleotide-binding transporter 1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09298" /inference="similar to AA sequence:ricco:30051.m000527" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc209t13" mRNA join(20925778..20926306,20927727..20927867, 20930702..20931224,20935389..20935580,20937504..20937602, 20939699..20939836,20940336..20940584,20943460..20943708, 20945066..20945211,20955505..20955582,20956426..20956555, 20961291..20961537,20961695..20961869,20963090..20963660) /locus_tag="TCM_044941" /product="Cyclic nucleotide-binding transporter 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene09298" /inference="similar to AA sequence:ricco:30051.m000527" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc246t3; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc209t13" mRNA join(20925778..20926306,20927727..20927867, 20930702..20931224,20935389..20935580,20937504..20937602, 20939699..20939836,20940336..20940584,20943460..20943708, 20945066..20945211,20955505..20955582,20956426..20956555, 20961291..20961537,20963090..20963660) /locus_tag="TCM_044941" /product="Cyclic nucleotide-binding transporter 1 isoform 5" /inference="alignment:exonerate-protein:2:frave:gene09298" /inference="similar to AA sequence:ricco:30051.m000527" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc246t8; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc209t13" mRNA join(20925778..20926306,20927727..20927867, 20930702..20931224,20935389..20935580,20937504..20937602, 20939699..20939836,20943460..20943708,20945066..20945211, 20955505..20955582,20956426..20956555,20961291..20961537, 20961707..20961869,20963090..20963660) /locus_tag="TCM_044941" /product="Cyclic nucleotide-binding transporter 1 isoform 8" /inference="alignment:exonerate-protein:2:frave:gene09298" /inference="similar to AA sequence:ricco:30051.m000527" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc246t6; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc209t13" mRNA join(20925778..20926306,20927727..20927817, 20930702..20931224,20935389..20935580,20937504..20937602, 20939699..20939836,20940336..20940584,20943460..20943708, 20945066..20945211,20955505..20955582,20956426..20956555, 20961291..20961537,20961707..20961869,20963090..20963660) /locus_tag="TCM_044941" /product="Cyclic nucleotide-binding transporter 1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09298" /inference="similar to AA sequence:ricco:30051.m000527" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc243t9; alternateUTRof:Thecc1EG044941t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc209t13" mRNA join(20925778..20926306,20927727..20927817, 20930702..20931224,20935389..20935580,20937504..20937602, 20939699..20939836,20940336..20940584,20943460..20943708, 20945066..20945211,20955505..20955582,20956426..20956555, 20961291..20961537,20963090..20963660) /locus_tag="TCM_044941" /product="Cyclic nucleotide-binding transporter 1 isoform 5" /inference="alignment:exonerate-protein:2:frave:gene09298" /inference="similar to AA sequence:ricco:30051.m000527" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc243t6; alternateUTRof:Thecc1EG044941t5; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc209t13" mRNA join(20925778..20926306,20927727..20927817, 20930702..20931224,20935389..20935580,20937504..20937602, 20939699..20939836,20940336..20940584,20943460..20943708, 20945066..20945211,20955505..20955582,20956426..20956555, 20961291..20961537,20961695..20961869,20963090..20963480) /locus_tag="TCM_044941" /product="Cyclic nucleotide-binding transporter 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene09298" /inference="similar to AA sequence:ricco:30051.m000527" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc243t3; alternateUTRof:Thecc1EG044941t2; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc209t13" mRNA join(20925778..20926306,20927727..20927817, 20930702..20931224,20935389..20935580,20937504..20937602, 20939699..20939836,20943460..20943708,20945066..20945211, 20955505..20955582,20956426..20956555,20961291..20961537, 20961707..20961869,20963090..20963480) /locus_tag="TCM_044941" /product="Cyclic nucleotide-binding transporter 1 isoform 8" /inference="alignment:exonerate-protein:2:frave:gene09298" /inference="similar to AA sequence:ricco:30051.m000527" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc243t1; alternateUTRof:Thecc1EG044941t8; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc209t13" mRNA join(20925779..20926326,20930700..20931224, 20935389..20935580,20937504..20937602,20939699..20939836, 20940336..20940584,20943460..20943708,20945066..20945211, 20955505..20955582,20956426..20956555,20961291..20961537, 20961707..20961869,20963090..20963660) /locus_tag="TCM_044941" /product="Cyclic nucleotide-binding transporter 1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09298" /inference="similar to AA sequence:ricco:30051.m000527" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7952t5_C1; alternateUTRof:Thecc1EG044941t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc209t13" mRNA join(20930700..20931224,20935389..20935580, 20937504..20937602,20939699..20939836,20940336..20940584, 20943460..20943708,20945066..20945211,20955505..20955582, 20956424..20956555,20961291..20961537,20961707..20961869, 20963090..20963660) /locus_tag="TCM_044941" /product="Cyclic nucleotide-binding transporter 1 isoform 10" /inference="alignment:exonerate-protein:2:frave:gene09298" /inference="similar to AA sequence:ricco:30051.m000527" /note="transcript variant 10; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5729t3; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc209t13" CDS join(20930718..20931224,20935389..20935580, 20937504..20937602,20939699..20939836,20940336..20940584, 20943460..20943708,20945066..20945211,20955505..20955582, 20956426..20956555,20961291..20961537,20961695..20961869, 20963090..20963207) /locus_tag="TCM_044941" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30051.m000527" /codon_start=1 /product="Cyclic nucleotide-binding transporter 1 isoform 2" /protein_id="EOY19691.1" /db_xref="TAIR:AT3G17700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD37" /translation="MACYDKDEVPMLSDIHPQPSENNQDSQFQALFSRTQSASISIPM NSIESYESTNLVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVESK AEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNS KASGIFDTKFHNVLYGDAKGWARRLMSFLSSYVPGVMNPHATVVQQWNQFFVISCLMA VFIDPLFFFLLSVQKDNKCIVINQPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPES RVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQIMILLVLPKYLGSSGANFAKNV LRTAILIQYLPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFMLSGHVVGSCWYLF GLQRVNQCLRNACHDSNIVNCEEFIDCGYGHTSNRTELPSWKNNANASACFSEDGFPY GIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTMAIVGLGLL LFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEELRRKVREAERYNWAAT RGVNEEMLFENLPEDLQRDIRRHLFKFVKKVRIFALMDDPILDAICERLRQKTYIKGS KVLSRGSLIEKMVFIVRGKMESVGENGVIDPLCEGDVCGEELLTWCLEHSSVNRVSVA DGKKIRIPGQRLLSNRIVRCLTNVEAFSLRAADLEEVTCLFSRFLRNPRVQGAIRYES RYWRSLAATHIQVAWRYRKKRLNRADTSQSGQSSR" CDS join(20930718..20931224,20935389..20935580, 20937504..20937602,20939699..20939836,20940336..20940584, 20943460..20943708,20945066..20945211,20955505..20955582, 20956426..20956555,20961291..20961537,20961695..20961869, 20963090..20963207) /locus_tag="TCM_044941" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30051.m000527" /codon_start=1 /product="Cyclic nucleotide-binding transporter 1 isoform 2" /protein_id="EOY19692.1" /db_xref="TAIR:AT3G17700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD37" /translation="MACYDKDEVPMLSDIHPQPSENNQDSQFQALFSRTQSASISIPM NSIESYESTNLVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVESK AEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNS KASGIFDTKFHNVLYGDAKGWARRLMSFLSSYVPGVMNPHATVVQQWNQFFVISCLMA VFIDPLFFFLLSVQKDNKCIVINQPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPES RVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQIMILLVLPKYLGSSGANFAKNV LRTAILIQYLPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFMLSGHVVGSCWYLF GLQRVNQCLRNACHDSNIVNCEEFIDCGYGHTSNRTELPSWKNNANASACFSEDGFPY GIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTMAIVGLGLL LFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEELRRKVREAERYNWAAT RGVNEEMLFENLPEDLQRDIRRHLFKFVKKVRIFALMDDPILDAICERLRQKTYIKGS KVLSRGSLIEKMVFIVRGKMESVGENGVIDPLCEGDVCGEELLTWCLEHSSVNRVSVA DGKKIRIPGQRLLSNRIVRCLTNVEAFSLRAADLEEVTCLFSRFLRNPRVQGAIRYES RYWRSLAATHIQVAWRYRKKRLNRADTSQSGQSSR" CDS join(20930718..20931224,20935389..20935580, 20937504..20937602,20939699..20939836,20940336..20940584, 20943460..20943708,20945066..20945211,20955505..20955582, 20956426..20956555,20961291..20961537,20961707..20961869, 20963090..20963207) /locus_tag="TCM_044941" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30051.m000527" /codon_start=1 /product="Cyclic nucleotide-binding transporter 1 isoform 1" /protein_id="EOY19690.1" /db_xref="TAIR:AT3G17700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD37" /translation="MACYDKDEVPMLSDIHPQPSENNQDSQFQALFSRTQSASISIPM NSIESYESTNLVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVESK AEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNS KASGIFDTKFHNVLYGDAKGWARRLMSFLSSYVPGVMNPHATVVQQWNQFFVISCLMA VFIDPLFFFLLSVQKDNKCIVINQPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPES RVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQIMILLVLPKYLGSSGANFAKNV LRTAILIQYLPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFMLSGHVVGSCWYLF GLQRVNQCLRNACHDSNIVNCEEFIDCGYGHTSNRTELPSWKNNANASACFSEDGFPY GIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTMAIVGLGLL LFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEELRRKVREAERYNWAAT RGVNEEMLFENLPEDLQRDIRRHLFKFVKKVRIFALMDDPILDAICERLRQKTYIKGS KVLSRGSLIEKMVFIVRGKMESVGENGVIDPLCEGDVCGEELLTWCLEHSSVNRDGKK IRIPGQRLLSNRIVRCLTNVEAFSLRAADLEEVTCLFSRFLRNPRVQGAIRYESRYWR SLAATHIQVAWRYRKKRLNRADTSQSGQSSR" CDS join(20930718..20931224,20935389..20935580, 20937504..20937602,20939699..20939836,20940336..20940584, 20943460..20943708,20945066..20945211,20955505..20955582, 20956426..20956555,20961291..20961537,20961707..20961869, 20963090..20963207) /locus_tag="TCM_044941" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30051.m000527" /codon_start=1 /product="Cyclic nucleotide-binding transporter 1 isoform 1" /protein_id="EOY19693.1" /db_xref="TAIR:AT3G17700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD37" /translation="MACYDKDEVPMLSDIHPQPSENNQDSQFQALFSRTQSASISIPM NSIESYESTNLVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVESK AEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNS KASGIFDTKFHNVLYGDAKGWARRLMSFLSSYVPGVMNPHATVVQQWNQFFVISCLMA VFIDPLFFFLLSVQKDNKCIVINQPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPES RVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQIMILLVLPKYLGSSGANFAKNV LRTAILIQYLPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFMLSGHVVGSCWYLF GLQRVNQCLRNACHDSNIVNCEEFIDCGYGHTSNRTELPSWKNNANASACFSEDGFPY GIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTMAIVGLGLL LFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEELRRKVREAERYNWAAT RGVNEEMLFENLPEDLQRDIRRHLFKFVKKVRIFALMDDPILDAICERLRQKTYIKGS KVLSRGSLIEKMVFIVRGKMESVGENGVIDPLCEGDVCGEELLTWCLEHSSVNRDGKK IRIPGQRLLSNRIVRCLTNVEAFSLRAADLEEVTCLFSRFLRNPRVQGAIRYESRYWR SLAATHIQVAWRYRKKRLNRADTSQSGQSSR" CDS join(20930718..20931224,20935389..20935580, 20937504..20937602,20939699..20939836,20940336..20940584, 20943460..20943708,20945066..20945211,20955505..20955582, 20956426..20956555,20961291..20961537,20961707..20961869, 20963090..20963207) /locus_tag="TCM_044941" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30051.m000527" /codon_start=1 /product="Cyclic nucleotide-binding transporter 1 isoform 1" /protein_id="EOY19695.1" /db_xref="TAIR:AT3G17700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD37" /translation="MACYDKDEVPMLSDIHPQPSENNQDSQFQALFSRTQSASISIPM NSIESYESTNLVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVESK AEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNS KASGIFDTKFHNVLYGDAKGWARRLMSFLSSYVPGVMNPHATVVQQWNQFFVISCLMA VFIDPLFFFLLSVQKDNKCIVINQPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPES RVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQIMILLVLPKYLGSSGANFAKNV LRTAILIQYLPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFMLSGHVVGSCWYLF GLQRVNQCLRNACHDSNIVNCEEFIDCGYGHTSNRTELPSWKNNANASACFSEDGFPY GIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTMAIVGLGLL LFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEELRRKVREAERYNWAAT RGVNEEMLFENLPEDLQRDIRRHLFKFVKKVRIFALMDDPILDAICERLRQKTYIKGS KVLSRGSLIEKMVFIVRGKMESVGENGVIDPLCEGDVCGEELLTWCLEHSSVNRDGKK IRIPGQRLLSNRIVRCLTNVEAFSLRAADLEEVTCLFSRFLRNPRVQGAIRYESRYWR SLAATHIQVAWRYRKKRLNRADTSQSGQSSR" CDS join(20930718..20931224,20935389..20935580, 20937504..20937602,20939699..20939836,20943460..20943708, 20945066..20945211,20955505..20955582,20956426..20956555, 20961291..20961537,20961707..20961869,20963090..20963207) /locus_tag="TCM_044941" /note="encoded by transcript variant 8; alternatively spliced; dbxref ricco:30051.m000527" /codon_start=1 /product="Cyclic nucleotide-binding transporter 1 isoform 8" /protein_id="EOY19697.1" /db_xref="TAIR:AT3G17700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD37" /translation="MACYDKDEVPMLSDIHPQPSENNQDSQFQALFSRTQSASISIPM NSIESYESTNLVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVESK AEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNS KASGIFDTKFHNVLYGDAKGWARRLMSFLSSYVPGVMNPHATVVQQWNQFFVISCLMA VFIDPLFFFLLSVQKDNKCIVINQPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPES RVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQRVNQCLRNACHDSNIVNCEEFI DCGYGHTSNRTELPSWKNNANASACFSEDGFPYGIYIQTVNLTTERSIITRYVYSLFW GFQQISTLAGNQTPSYFVWEVLFTMAIVGLGLLLFALLIGNMQNFLQALGRRRLEMSL RRRDVEQWMSHRRLPEELRRKVREAERYNWAATRGVNEEMLFENLPEDLQRDIRRHLF KFVKKVRIFALMDDPILDAICERLRQKTYIKGSKVLSRGSLIEKMVFIVRGKMESVGE NGVIDPLCEGDVCGEELLTWCLEHSSVNRDGKKIRIPGQRLLSNRIVRCLTNVEAFSL RAADLEEVTCLFSRFLRNPRVQGAIRYESRYWRSLAATHIQVAWRYRKKRLNRADTSQ SGQSSR" CDS join(20930718..20931224,20935389..20935580, 20937504..20937602,20939699..20939836,20943460..20943708, 20945066..20945211,20955505..20955582,20956426..20956555, 20961291..20961537,20961707..20961869,20963090..20963207) /locus_tag="TCM_044941" /note="encoded by transcript variant 9; alternatively spliced; dbxref ricco:30051.m000527" /codon_start=1 /product="Cyclic nucleotide-binding transporter 1 isoform 8" /protein_id="EOY19698.1" /db_xref="TAIR:AT3G17700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD37" /translation="MACYDKDEVPMLSDIHPQPSENNQDSQFQALFSRTQSASISIPM NSIESYESTNLVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVESK AEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNS KASGIFDTKFHNVLYGDAKGWARRLMSFLSSYVPGVMNPHATVVQQWNQFFVISCLMA VFIDPLFFFLLSVQKDNKCIVINQPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPES RVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQRVNQCLRNACHDSNIVNCEEFI DCGYGHTSNRTELPSWKNNANASACFSEDGFPYGIYIQTVNLTTERSIITRYVYSLFW GFQQISTLAGNQTPSYFVWEVLFTMAIVGLGLLLFALLIGNMQNFLQALGRRRLEMSL RRRDVEQWMSHRRLPEELRRKVREAERYNWAATRGVNEEMLFENLPEDLQRDIRRHLF KFVKKVRIFALMDDPILDAICERLRQKTYIKGSKVLSRGSLIEKMVFIVRGKMESVGE NGVIDPLCEGDVCGEELLTWCLEHSSVNRDGKKIRIPGQRLLSNRIVRCLTNVEAFSL RAADLEEVTCLFSRFLRNPRVQGAIRYESRYWRSLAATHIQVAWRYRKKRLNRADTSQ SGQSSR" CDS join(20930718..20931224,20935389..20935580, 20937504..20937602,20939699..20939836,20940336..20940584, 20943460..20943708,20945066..20945211,20955505..20955582, 20956426..20956555,20961291..20961537,20963090..20963139) /locus_tag="TCM_044941" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30051.m000527" /codon_start=1 /product="Cyclic nucleotide-binding transporter 1 isoform 5" /protein_id="EOY19694.1" /db_xref="TAIR:AT3G17700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD37" /translation="MACYDKDEVPMLSDIHPQPSENNQDSQFQALFSRTQSASISIPM NSIESYESTNLVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVESK AEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNS KASGIFDTKFHNVLYGDAKGWARRLMSFLSSYVPGVMNPHATVVQQWNQFFVISCLMA VFIDPLFFFLLSVQKDNKCIVINQPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPES RVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQIMILLVLPKYLGSSGANFAKNV LRTAILIQYLPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFMLSGHVVGSCWYLF GLQRVNQCLRNACHDSNIVNCEEFIDCGYGHTSNRTELPSWKNNANASACFSEDGFPY GIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTMAIVGLGLL LFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEELRRKVREAERYNWAAT RGVNEEMLFENLPEDLQRDIRRHLFKFVKKVRIFALMDDPILDAICERLRQKTYIKGS KVLSRGSLIEKMVFIVRGKMESVGENGVIDPLCEGDVCGEELLTWCLEHSSVNRGMNH AIGEALLLLIFK" CDS join(20930718..20931224,20935389..20935580, 20937504..20937602,20939699..20939836,20940336..20940584, 20943460..20943708,20945066..20945211,20955505..20955582, 20956426..20956555,20961291..20961537,20963090..20963139) /locus_tag="TCM_044941" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:30051.m000527" /codon_start=1 /product="Cyclic nucleotide-binding transporter 1 isoform 5" /protein_id="EOY19696.1" /db_xref="TAIR:AT3G17700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD37" /translation="MACYDKDEVPMLSDIHPQPSENNQDSQFQALFSRTQSASISIPM NSIESYESTNLVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVESK AEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNS KASGIFDTKFHNVLYGDAKGWARRLMSFLSSYVPGVMNPHATVVQQWNQFFVISCLMA VFIDPLFFFLLSVQKDNKCIVINQPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPES RVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQIMILLVLPKYLGSSGANFAKNV LRTAILIQYLPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFMLSGHVVGSCWYLF GLQRVNQCLRNACHDSNIVNCEEFIDCGYGHTSNRTELPSWKNNANASACFSEDGFPY GIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTMAIVGLGLL LFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEELRRKVREAERYNWAAT RGVNEEMLFENLPEDLQRDIRRHLFKFVKKVRIFALMDDPILDAICERLRQKTYIKGS KVLSRGSLIEKMVFIVRGKMESVGENGVIDPLCEGDVCGEELLTWCLEHSSVNRGMNH AIGEALLLLIFK" CDS join(20930718..20931224,20935389..20935580, 20937504..20937602,20939699..20939836,20940336..20940584, 20943460..20943708,20945066..20945211,20955505..20955582, 20956424..20956475) /locus_tag="TCM_044941" /note="encoded by transcript variant 10; alternatively spliced; dbxref ricco:30051.m000527" /codon_start=1 /product="Cyclic nucleotide-binding transporter 1 isoform 10" /protein_id="EOY19699.1" /db_xref="TAIR:AT3G17700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD37" /translation="MACYDKDEVPMLSDIHPQPSENNQDSQFQALFSRTQSASISIPM NSIESYESTNLVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVESK AEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYYNFKADQEKNS KASGIFDTKFHNVLYGDAKGWARRLMSFLSSYVPGVMNPHATVVQQWNQFFVISCLMA VFIDPLFFFLLSVQKDNKCIVINQPATKAFVVLRSMTDFIYLLNMLLQFRLAYIAPES RVVGAGELVDHPKKIAVNYLSRYFFLDLFVVLPLPQIMILLVLPKYLGSSGANFAKNV LRTAILIQYLPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFMLSGHVVGSCWYLF GLQRVNQCLRNACHDSNIVNCEEFIDCGYGHTSNRTELPSWKNNANASACFSEDGFPY GIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTMAIVGLGLL LFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEELRRGKYERPNDIIGLP QEV" mobile_element complement(20949734..20954689) /note="source:INTACT121_F29_scaffold_8-int 1 4969" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20963435..20963490 /note="source:CACAO_M_E42514_F40_scaffold_5 123 174" /mobile_element_type="retrotransposon:LTR/Copia" gene 20974358..20979102 /locus_tag="TCM_044944" /note="dbxref CacaoGD:Thecc1EG044944" mRNA join(20974358..20974663,20974793..20974910, 20974992..20975180,20975289..20975762,20975866..20975967, 20976040..20976240,20976350..20976530,20976601..20976869, 20976985..20977074,20977219..20977494,20977602..20979102) /locus_tag="TCM_044944" /product="Homeobox-leucine zipper protein HDG11" /inference="alignment:exonerate- protein:2:ricco:30135.m000188" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030175t3" /inference="similar to AA sequence:frave:gene09297" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5686t3" CDS join(20974545..20974663,20974793..20974910, 20974992..20975180,20975289..20975762,20975866..20975967, 20976040..20976240,20976350..20976530,20976601..20976869, 20976985..20977074,20977219..20977494,20977602..20978111) /locus_tag="TCM_044944" /note="dbxref frave:gene09297; paralog of Thecc1EG030175t3" /codon_start=1 /product="Homeobox-leucine zipper protein HDG11" /protein_id="EOY19700.1" /db_xref="TAIR:AT1G73360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FX31" /translation="MEYGSGGGSGSGGDHDASDPSRRKKRYHRHTAHQIQRLEAMFKE CPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENI AIREALKNVICPSCGGPPATEDSYFDEQKLRMENAQLKEELDRVSSIAAKYIGRPISQ LPPVQPIHVSSLDLTMASFGGHGVGVAGPSLDLDLLPGSSSTMPNLPFQPIAISDMDK SLMTDIAANAMEELLRLLQTNEPLWIKSTNDGRDVLNLESYERIFPRANTHFKSPNVR IEASRDSGVVIMNGLALVDMFMDSNKWVDLFPTIVSMAKTIEIISSGMMGSHSGSLQL MYEELQVLSPLVPTREFYILRFCQQIEPGLWAIVNISYDFPQFASQCRSHRLPSGCLI QDMPNGYSKVTWMEHVEIEDKTPTHRLYRDLIHSGLAFGAERWLATLQRMCERFACLM VSGTSTRDLGGVIPSPDGKRSMMKLAQRMVNNFCTSISTSNSHRWTTLSGLNEVGVRV TVHKSSDPGQPNGVVLSAATTFWLPVTPQNVFNFFKDERTRPQWDVLSNSNAVQEVAH IANGSHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAINVAMSGEDP SYIPLLPSGFTISPDGHPDQGDGASTSSTVHGNMGRSGGSLITVAFQILFLMIWFPYC YTTVLPLSPSSLNIEIREIQSLFALVVFNVREVLWLVGTFNALSSRAEAAYLLLAAAI AVSAAKLDYNLQQLMFFIYFYFLGGFFTRHFGFLQFTLEEWLATSLKRSQERTIRCLS CCTSHCFCLNGFLSSLCSILSHLLLYSTLLYSTRQQEKVVWFGY" mobile_element complement(20979505..20979758) /note="source:CACAO_M_S_E17060_F3_scaffold_3 11527 11775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20979779..20979931) /note="source:CACAO_M_S_E17060_F3_scaffold_3 1183 1335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20980291..20983622) /note="source:CACAO_M_S_E120337_F85_scaffold_10 1 3332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20983565..20983631 /note="source:CACAO_M_S_E122077_F328_scaffold_10 3133 3199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20983625..20983792) /note="source:CACAO_M_S_E34046_F60_scaffold_4 11248 11415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20983793..20985175) /note="source:INTACT197_F50_scaffold_5-int 2897 4237" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20985176..20985213) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1212 2626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20985208..20987680) /note="source:CACAO_M_E42395_F3_scaffold_5 15055 17490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20987068..20987740 /note="source:INTACT143_F152_scaffold_7-int 6862 7564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20987741..20990589) /note="source:CACAO_M_S_E120333_F15_scaffold_10 1 2849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20990590..20990659 /note="source:scaffold_5_CACTA_0591 4768 4847" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20990590..20990652) /note="source:CACAO_M_E42395_F3_scaffold_5 4530 4598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20990645..20991729 /note="source:INTACT319_F3_scaffold_1-int 5769 6831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20990955..20991827) /note="source:scaffold_5_CACTA_0591 10059 10903" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20991828..20992506 /note="source:scaffold_5_CACTA_0591 5117 5828" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20992910..20993637 /note="source:CACAO_M_E14113_F106_scaffold_3 4877 5607" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20993628..20998986 /note="source:CACAO_M_E12058_F3_scaffold_2 497 5845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21001189..21002057) /note="source:scaffold_5_CACTA_0591 10060 10909" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21001993..21002068 /note="source:CACAO_M_E5899_F5_scaffold_2 22624 22700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21005412..21006122) /note="source:INTACT189_F49_scaffold_5-int 17863 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21007433..21009806) /note="source:INTACT319_F3_scaffold_1-int 1 2374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21009898..21010166) /note="source:scaffold_8_CACTA_0859 15546 15827" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21010165..21011986) /note="source:CACAO_M_E14113_F106_scaffold_3 10953 12780" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21011987..21014798) /note="source:CACAO_M_E70372_F15_scaffold_10 1 2797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21014602..21014821) /note="source:scaffold_3_CACTA_0382 3319 3538" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21014793..21019121) /note="source:CACAO_M_E14113_F106_scaffold_3 14621 18954" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21019097..21019118 /note="source:CACAO_M_S_E50960_F369_scaffold_4 6919 6940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21019119..21021849) /note="source:CACAO_M_E70371_F15_scaffold_10 1 2731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21025937..21027033) /note="source:scaffold_8_CACTA_0859 520 1628" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21027311..21027686) /note="source:scaffold_8_CACTA_0859 15426 15803" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21027422..21028334) /note="source:INTACT319_F3_scaffold_1-int 616 1572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21027690..21028841) /note="source:scaffold_8_CACTA_0859 494 1628" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21028959..21039339) /note="source:CACAO_M_S_E120315_F15_scaffold_10 1 10363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21040311..21040585) /note="source:CACAO_M_E52239_F256_scaffold_7 672 987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21040973..21041173) /note="source:scaffold_9_CACTA_0931 333 534" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21043072..21043284) /note="source:INTACT189_F49_scaffold_5-int 17861 18078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21044469..21046573 /note="source:CACAO_M_S_E7818_F60_scaffold_2 8578 10693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21046566..21047333 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5113 5897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21047383..21048713 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5808 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21049476..21060330) /note="source:CACAO_M_S_E120308_F33_scaffold_10 1 10855" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21061484..21081547) /locus_tag="TCM_044951" /note="dbxref CacaoGD:Thecc1EG044951" mRNA complement(join(21061484..21061724,21070337..21071014, 21072060..21072442,21072996..21073359,21073973..21074108, 21074185..21074240,21081524..21081547)) /locus_tag="TCM_044951" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s14880.1" /inference="similar to AA sequence:Phytozome:GSVIVT01024238001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc593t3" mobile_element complement(21063495..21065623) /note="source:CACAO_M_E70339_F318_scaffold_10 852 2937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21065883..21066489 /note="source:CACAO_M_S_E33700_F318_scaffold_4 2433 3036" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(21070255..21071014,21072178..21072442, 21072996..21073359,21073973..21074108, 21074185..>21074207)) /locus_tag="TCM_044951" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s14880.1" /inference="similar to AA sequence:Phytozome:GSVIVT01024238001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is medium, protein is partial5; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01726t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc593t3" CDS complement(join(21070903..21071014,21072060..21072442, 21072996..21073359,21073973..21074108,21074185..21074239)) /locus_tag="TCM_044951" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19701.1" /db_xref="Phytozome:GSVIVT01024238001" /translation="MQTVRGGRIFCFKHSAAPATLFAEARNIVRRGRSYAASLPSDGP KRKKVSKDERRAMIESFITRYRSVNAGKFPSASAAQKEVGGSYYVVRKVLQELEYNSK VCSSNSSFENLSGKVVDKEEKSFSEVQVVSTAVRVQNDTCTEAIDDVKMLDSDDKELE AEGVLRVYSSEEETFSKGALKPQTPGSHYDFVLEENIVLKDDAKSLEKQEDAKVEDAA IDSYDKFQMVADKQKIVEVSDQHLESAEECKPESHGVQSDFVGVEGDLLKVETEVGNA EGDKKEQIASEELLNSGGPELKAEHHRQSSEEEKHARNFLSEQSDDAEFSKKSTLWGN LKSFADGIINIWRKL" mRNA complement(join(21070991..21071377,21072060..21072442, 21072996..21073359,21073973..21074108,21074185..21074528)) /locus_tag="TCM_044951" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s14880.1" /inference="similar to AA sequence:Phytozome:GSVIVT01024238001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc593t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc593t3" CDS complement(join(21071004..21071014,21072178..21072442, 21072996..21073359,21073973..21074108, 21074185..>21074206)) /locus_tag="TCM_044951" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY19703.1" /db_xref="Phytozome:GSVIVT01024238001" /translation="FKHSAAPATLFAEARNIVRRGRSYAASLPSDGPKRKKVSKDERR AMIESFITRYRSVNAGKFPSASAAQKEVGGSYYVVRKVLQELEYNSKVCSSNSSFENL SGKVVDKEEKSFSEVQVVSTAVRVQNDTCTEAIDDVKMLDSDDKELEAEGVLRVYSSE EETFSKGALKPQTPGSHYDFVLEENIVLKDDAKSLEKQEDAKVEDAAIDSYDKFQMVA DKQKIVEVSDQHLESAEECKPESHGVQSDFVGVEGDLLKVETEVGTS" CDS complement(join(21071374..21071377,21072060..21072442, 21072996..21073359,21073973..21074108,21074185..21074239)) /locus_tag="TCM_044951" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY19702.1" /db_xref="Phytozome:GSVIVT01024238001" /translation="MQTVRGGRIFCFKHSAAPATLFAEARNIVRRGRSYAASLPSDGP KRKKVSKDERRAMIESFITRYRSVNAGKFPSASAAQKEVGGSYYVVRKVLQELEYNSK VCSSNSSFENLSGKVVDKEEKSFSEVQVVSTAVRVQNDTCTEAIDDVKMLDSDDKELE AEGVLRVYSSEEETFSKGALKPQTPGSHYDFVLEENIVLKDDAKSLEKQEDAKVEDAA IDSYDKFQMVADKQKIVEVSDQHLESAEECKPESHGVQSDFVGVEGDLLKVETEVGNA EGDKKEQIASEELLNSGGPELKAEHHRQSSEEEKHAR" mobile_element complement(21075917..21077632) /note="source:CACAO_M_E70357_F3_scaffold_10 1 1716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21080611..21081625) /note="source:scaffold_8_CACTA_0859 16514 17507" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21085223..21085357) /note="source:CACAO_Mariner_E229_scaffold_9 12 142" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(21089075..21092163) /note="source:CACAO_M_E14375_F318_scaffold_3 1 3022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21093887..21094377 /note="source:CACAO_M_E11098_F15_scaffold_2 6241 6762" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21094370..21095142) /note="source:scaffold_2_CACTA_0262 7764 8557" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21095134..21096632 /note="source:INTACT701_F305_scaffold_10-int 3362 4871" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21097325..21097405) /note="source:CACAO_M_E3626_F245_scaffold_1 2944 3024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21098441..21098810) /note="source:CACAO_M_S_E38262_F319_scaffold_4 3023 3391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21098811..21100031) /note="source:scaffold_2_CACTA_0262 6552 7768" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21099774..21100833) /note="source:CACAO_M_E5326_F22_scaffold_2 19814 20449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21100017..21105382 /note="source:CACAO_M_E33933_F9_scaffold_4 506 5084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21105383..21107536 /note="source:INTACT410F_F357_scaffold_4-int 44 2223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21106983..21108224) /note="source:INTACT224_F176_scaffold_8-int 11150 12374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21108222..21114753) /note="source:INTACT224_F176_scaffold_8-int 4827 11361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21113096..21115484 /note="source:INTACT410F_F357_scaffold_4-int 44 2398" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21115464..21117044) /note="source:CACAO_M_S_E90022_F9_scaffold_8 7808 9388" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21121686..21123168 /note="source:CACAO_M_E33933_F9_scaffold_4 10408 11847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21126449..21130033) /note="source:INTACT85_F9_scaffold_4-int 4747 8325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21130036..21130446 /note="source:CACAO_M_S_E66354_F74_scaffold_5 2920 3329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21132198..21133301) /note="source:CACAO_M_E35511_F5_scaffold_5 9491 10602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21133290..21133337 /note="source:CACAO_M_E70891_F369_scaffold_10 16062 16111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21133302..21133391) /note="source:CACAO_M_E14153_F378_scaffold_3 2403 2490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21133321..21133933 /note="source:CACAO_M_S_E19200_F389_scaffold_3 7527 8149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21133931..21134377 /note="source:INTACT597_F267_scaffold_2-int 17101 17568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21134378..21137043 /note="source:INTACT254_F60_scaffold_3-int 6060 8722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21137044..21137315 /note="source:CACAO_M_E5326_F22_scaffold_2 20269 20534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21137267..21137667) /note="source:CACAO_M_E33282_F13_scaffold_4 11509 11893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21138418..21138613 /note="source:scaffold_2_CACTA_0262 7606 7801" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21138492..21138633 /note="source:CACAO_M_E5326_F22_scaffold_2 21805 21943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21138638..21139283) /note="source:CACAO_M_E33282_F13_scaffold_4 10326 10970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21139310..21144093 /note="source:CACAO_M_S_E84376_F22_scaffold_6 12725 17556" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21142656..21145234 /note="source:CACAO_M_S_E99244_F4_scaffold_9 3760 6340" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21145232..21146812 /note="source:CACAO_M_S_E64889_F3_scaffold_5 98 1696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21150889..21152707) /note="source:CACAO_M_E24389_F60_scaffold_4 1257 3091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21152708..21155327 /note="source:CACAO_M_S_E144173_F231_scaffold_10 1 2667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21155328..21156593) /note="source:CACAO_M_E11285_F60_scaffold_2 1 1258" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21158031..21159210 /note="source:CACAO_M_S_E7818_F60_scaffold_2 15341 16513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21158036..21161029) /note="source:CACAO_M_S_E53909_F7_scaffold_5 1 2981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21163504..21166046) /note="source:CACAO_M_E14672_F7_scaffold_3 439 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21166775..21167430 /note="source:INTACT570_F260_scaffold_5-int 8650 9291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21168044..21168362 /note="source:CACAO_M_E58601_F7_scaffold_9 9621 9938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21168481..21168867 /note="source:CACAO_M_E58601_F7_scaffold_9 9848 10229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21169822..21172347 /note="source:CACAO_M_E33213_F12_scaffold_4 8120 10702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21172660..21172773 /note="source:INTACT405F_F91_scaffold_4-int 7319 7433" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21172781..21175786) /note="source:CACAO_M_S_E120272_F7_scaffold_10 1 3006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21175894..21175996 /note="source:CACAO_M_S_E64023_F13_scaffold_5 2700 2802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21175997..21176364) /note="source:INTACT570_F260_scaffold_5-int 2904 3271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21176365..21178071) /note="source:CACAO_M_S_E5046_F335_scaffold_1 19065 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21178759..21181740) /note="source:INTACT570_F260_scaffold_5-int 8513 11503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21181906..21184542) /note="source:CACAO_M_E70329_F198_scaffold_10 1 2637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21186850..21187645) /note="source:CACAO_M_E5899_F5_scaffold_2 21828 22613" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21188583..21188769 /note="source:CACAO_M_E58601_F7_scaffold_9 9850 9975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21190587..21193446 /note="source:CACAO_M_E56252_F15_scaffold_8 1 2841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21193422..21193583) /note="source:CACAO_M_E5899_F5_scaffold_2 1082 1242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21193447..21193543 /note="source:INTACT454F_F360_scaffold_4-int 608 707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21195277..21197142) /note="source:CACAO_M_S_E5046_F335_scaffold_1 292 2626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21197398..21199336) /note="source:CACAO_M_E44570_F33_scaffold_6 9014 10954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21199437..21206044) /note="source:CACAO_M_E44570_F33_scaffold_6 2405 8998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21206145..21208564 /note="source:INTACT218_F33_scaffold_9-int 8540 10958" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21208533..21210429 /locus_tag="TCM_044962" /note="dbxref CacaoGD:Thecc1EG044962" mRNA join(21208533..21208887,21208993..21209275, 21209420..21209859,21209965..21210429) /locus_tag="TCM_044962" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044158t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage" CDS join(21208595..21208887,21208993..21209275, 21209420..21209859,21209965..21210268) /locus_tag="TCM_044962" /note="paralog of Thecc1EG044158t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19704.1" /translation="MVAGEKASLIPLDREPIWYKDRLTASFFEDEFYALAQPFKFTMV GKFSRMPRMQEIRAAFKGIGLIGAYEIKWLDYKHILIQLMHEHDLNRIWLKQVWAHLY EKSALLVIAKTVGRPLLADEATANGTRPSVAWVCVEYDCQKPPIEQVWIVTRDRQIGS VMGGYMQKVEFARLPEYCTHCCHVGHGITSCMPAKQSTKWQVVSRPGPSGAKDQRSME IDPECHKEVQVQLSNRFKAVELMEDAGQSKVSIEERTGQTVMGVEIVSSGVAREQLII HNNVQGNNEISRLQEGKNKKDIVTLKKGNIAATSGSSEPGSTSAWVEEGNERCQNAPA RAENGDEQPSGVGMVTARSRKPNFVESEQQMIFHKKGVHGQTKNATAEKENFAKSQPL EGGAQKFFHVKSMQDPSDNIEGERERAEPTSLYILGCAVECGNKGVD" mobile_element 21212012..21212318 /note="source:scaffold_3_CACTA_0382 11571 11877" /mobile_element_type="transposon:TIR/CACTA" gene complement(21212772..21213917) /locus_tag="TCM_044963" /note="dbxref CacaoGD:Thecc1EG044963" mRNA complement(join(21212772..21213408,21213524..21213917)) /locus_tag="TCM_044963" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage" CDS complement(join(21213220..21213408,21213524..21213577)) /locus_tag="TCM_044963" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19705.1" /translation="MEKIKEDTYWANEQGRNLKRKRIDFESKKKEERRKKERERREKK EEKLQGGSALEKIGENQKVFSHMPLLKLEEEIGGSA" mobile_element 21214334..21215089 /note="source:INTACT570_F260_scaffold_5-int 8577 9325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21215186..21215376) /note="source:CACAO_M_E5899_F5_scaffold_2 21607 21795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21218909..21219643) /note="source:INTACT280_F60_scaffold_5-int 9772 10498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21221218..21221295) /note="source:INTACT280_F60_scaffold_5-int 10335 10416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21223328..21224789) /note="source:CACAO_M_S_E84376_F22_scaffold_6 17426 18838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21224745..21224790 /note="source:CACAO_M_E9978_F12_scaffold_2 6046 6086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21224791..21235707) /note="source:CACAO_M_E70304_F52_scaffold_10 1 10917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21235708..21236006) /note="source:scaffold_5_CACTA_0591 13989 14292" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21236024..21236798) /note="source:scaffold_5_CACTA_0591 10155 10909" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21238010..21240713) /note="source:CACAO_M_E69554_F279_scaffold_9 222 2908" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21241079..21241128) /note="source:CACAO_M_E59641_F12_scaffold_9 1718 1766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21241354..21241568) /note="source:CACAO_M_S_E31635_F14_scaffold_3 17338 17498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21244921..21247641) /note="source:CACAO_M_E70299_F369_scaffold_10 1 2721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21253991..21254696) /note="source:CACAO_M_E58324_F9_scaffold_9 9491 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21256621..21257979 /note="source:INTACT518_F239_scaffold_2-int 6890 8249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21257711..21258390) /note="source:CACAO_M_E43348_F5_scaffold_5 18987 19588" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21258399..21260270) /note="source:CACAO_M_S_E84376_F22_scaffold_6 15427 16981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21259949..21262652 /note="source:scaffold_2_CACTA_0259 1655 4365" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21262646..21265144 /note="source:INTACT518_F239_scaffold_2-int 6169 8769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21264716..21266042) /note="source:scaffold_5_CACTA_0591 10058 10893" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21270369..21273351) /note="source:CACAO_M_S_E120224_F245_scaffold_10 1 2965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21274554..21274621 /note="source:CACAO_M_E58962_F13_scaffold_9 14356 14409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21274567..21277488) /note="source:CACAO_M_E44543_F5_scaffold_6 6598 9516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21277623..21278005 /note="source:INTACT39F_F22_scaffold_1-int 3828 4242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21278741..21279319 /note="source:INTACT39F_F22_scaffold_1-int 5309 5899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21280225..21282247) /note="source:CACAO_M_E70288_F106_scaffold_10 1 2023" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21282505..21282555 /note="source:INTACT160_F4_scaffold_7-int 7623 7673" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21282646..21285475) /note="source:INTACT506_F233_scaffold_3-int 1 2813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21286835..21289344 /note="source:scaffold_3_CACTA_0388 8447 10979" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21289354..21289991) /note="source:CACAO_M_E9677_F7_scaffold_2 5146 5777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21292344..21292544) /note="source:CACAO_M_E44543_F5_scaffold_6 6402 6602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21292543..21292824) /note="source:INTACT280_F60_scaffold_5-int 9626 9893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21292765..21293028) /note="source:scaffold_3_CACTA_0382 10509 10775" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21292985..21293224 /note="source:CACAO_M_S_E84376_F22_scaffold_6 10169 10379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21293668..21294658) /note="source:CACAO_M_S_E19828_F19_scaffold_3 6969 7960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21294658..21296160 /note="source:CACAO_M_E9677_F7_scaffold_2 9864 11348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21296806..21299761) /note="source:CACAO_M_E70276_F15_scaffold_10 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21300551..21300607 /note="source:CACAO_M_E58324_F9_scaffold_9 22906 22958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21300889..21301239) /note="source:INTACT642F_F365_scaffold_5-int 5902 6271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21301230..21302446) /note="source:CACAO_M_S_E14932_F233_scaffold_2 8730 9906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21302530..21304190 /note="source:INTACT329_F199_scaffold_2-int 3676 5325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21304339..21304351 /note="source:scaffold_3_CACTA_0388 8443 8459" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21304352..21305053) /note="source:INTACT506_F233_scaffold_3-int 9390 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21304697..21305098 /note="source:CACAO_M_E1841_F5_scaffold_1 23282 23688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21305100..21307774) /note="source:CACAO_M_S_E120209_F144_scaffold_10 1 2675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21307775..21309547 /note="source:scaffold_3_CACTA_0382 10060 11876" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21308179..21312189 /note="source:CACAO_M_S_E19828_F19_scaffold_3 2409 6443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21312192..21314505 /note="source:CACAO_M_E58324_F9_scaffold_9 7665 10012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21314421..21314518 /note="source:scaffold_3_CACTA_0382 1 101" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21314506..21315538 /note="source:INTACT118_F5_scaffold_9-int 4630 5633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21315534..21316386 /note="source:INTACT160_F4_scaffold_7-int 12782 13820" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21316371..21316692 /note="source:scaffold_5_CACTA_0599 11245 11505" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21316572..21323096 /note="source:INTACT160_F4_scaffold_7-int 7619 14939" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21323197..21323271 /note="source:INTACT95_F143_scaffold_9-int 7238 7314" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21323269..21324284 /note="source:INTACT160_F4_scaffold_7-int 13922 14933" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(21323912..21331890) /locus_tag="TCM_044968" /note="dbxref CacaoGD:Thecc1EG044968" mRNA complement(join(21323912..21325059,21326168..21326435, 21331886..21331890)) /locus_tag="TCM_044968" /product="Uncharacterized protein" /note="quality class is strong-expresste, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.74 coverage" mobile_element 21324275..21324814 /note="source:INTACT329_F199_scaffold_2-int 1668 2212" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(21324768..21325059,21326168..21326244)) /locus_tag="TCM_044968" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19706.1" /translation="MTNDHRSACKLIIMPLPSCSCMLDIRCNTSPTTRRKVSDNGYRY LSRMIISDNPFSHLVHVPFPRIDFIRTILVRLFKLLNSGLPLEGTDPLINRVKLHVTL SPLSIYQLRAVESSNPSLVL" mobile_element 21324939..21329749 /note="source:INTACT329_F199_scaffold_2-int 2387 7318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21329755..21331838 /note="source:CACAO_M_S_E19828_F19_scaffold_3 6863 9002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21331274..21332742) /note="source:INTACT293_F14_scaffold_5-int 8679 10154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21332741..21333105 /note="source:INTACT563_F255_scaffold_10-int 16607 17128" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21333106..21333181 /note="source:INTACT511_F7_scaffold_4-int 7157 7230" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21333491..21334376 /note="source:CACAO_M_E65323_F12_scaffold_9 7834 8682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21334542..21335564 /note="source:CACAO_M_E65323_F12_scaffold_9 2939 3653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21335457..21336016) /note="source:CACAO_M_S_E31635_F14_scaffold_3 2559 3108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21336049..21336779 /note="source:INTACT293_F14_scaffold_5-int 10720 11439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21336778..21339248) /note="source:CACAO_M_E43348_F5_scaffold_5 6206 8671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21339334..21340046 /note="source:CACAO_M_E9898_F141_scaffold_2 1 710" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21340149..21342505 /note="source:CACAO_M_E9898_F141_scaffold_2 740 3100" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21342538..21345062 /note="source:CACAO_M_S_E7335_F51_scaffold_2 1 2513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21345032..21345119) /note="source:CACAO_M_E73087_F12_scaffold_10 11701 11770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21345062..21345118 /note="source:INTACT777_F7_scaffold_9-int 7060 7096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21345119..21348120) /note="source:CACAO_M_S_E120192_F7_scaffold_10 1 3002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21348121..21351054) /note="source:CACAO_M_E12572_F7_scaffold_3 1 2937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21351055..21351648) /note="source:CACAO_M_S_E51419_F51_scaffold_4 1 597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21351649..21352612) /note="source:CACAO_M_E43348_F5_scaffold_5 2614 3577" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21352624..21356540 /note="source:CACAO_M_E3884_F22_scaffold_1 16780 23099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21358288..21361163 /note="source:INTACT170_F12_scaffold_5-int 4737 6822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21361010..21361540) /note="source:INTACT563_F255_scaffold_10-int 16856 17384" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21361541..21362975) /note="source:CACAO_M_E48538_F49_scaffold_6 1789 3240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21363275..21364369) /note="source:INTACT563_F255_scaffold_10-int 5340 6433" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21364356..21364913) /note="source:INTACT563_F255_scaffold_10-int 4066 4623" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21365065..21365486) /note="source:INTACT563_F255_scaffold_10-int 3660 4075" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21365596..21375769 /note="source:CACAO_M_E50198_F12_scaffold_7 1 10170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21376162..21377004 /note="source:INTACT170_F12_scaffold_5-int 1178 2019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21376885..21377409) /note="source:CACAO_M_S_E64832_F14_scaffold_5 11018 11511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21376998..21379129 /note="source:INTACT170_F12_scaffold_5-int 4630 6828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21380953..21383820) /note="source:CACAO_M_E70239_F392_scaffold_10 1 2827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21387061..21388208 /note="source:CACAO_M_S_E15173_F4_scaffold_2 12549 13690" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21388209..21391201) /note="source:CACAO_M_S_E120169_F7_scaffold_10 117 2993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21391202..21391837 /note="source:CACAO_M_S_E83372_F14_scaffold_6 4026 4664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21395020..21397600 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17615 20247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21399477..21402429 /note="source:INTACT88_F12_scaffold_4-int 1265 4212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21405329..21405576 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 6060" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21405595..21408204 /note="source:CACAO_M_S_E64023_F13_scaffold_5 6379 9000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21409661..21410357) /note="source:CACAO_M_E24592_F195_scaffold_4 3175 3874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21410354..21410754 /note="source:CACAO_M_E58148_F12_scaffold_9 9340 9741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21410755..21417494) /note="source:CACAO_M_E12537_F13_scaffold_3 3584 10340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21417495..21418024) /note="source:CACAO_M_E70226_F322_scaffold_10 2287 2811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21422558..21422612 /note="source:INTACT199_F5_scaffold_6-int 5885 5939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21425081..21425810) /note="source:CACAO_M_E73087_F12_scaffold_10 9928 10651" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21431242..21432083 /locus_tag="TCM_044982" /note="dbxref CacaoGD:Thecc1EG044982" mRNA 21431242..21432083 /locus_tag="TCM_044982" /product="Retrotransposon protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400065776.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033345t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400029923" /note="quality class is strong-expresste, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc11239t1_G3" CDS 21431242..21431754 /locus_tag="TCM_044982" /note="paralog of Thecc1EG033345t1" /codon_start=1 /product="Retrotransposon protein" /protein_id="EOY19707.1" /db_xref="Phytozome:PGSC0003DMP400029923" /db_xref="TAIR:ATMG00860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2I5E5" /translation="MDLMNRVFKPYLDKFVVVFIDDILIYSKSREEHEQHLKIVLQIL REHRLYAKFSKCEFWLESVAFLGHVVSKEGIQVDTKKIEAVEKWPRPTSVTEIRSFVG LAGYYRRFLKDFSKIVAPLTKLTRKDTKFEWSDACKNSFEKLKACLTTAPVLSLPQGT RCFVMHRRLV" mobile_element 21436534..21436572 /note="source:CACAO_M_S_E6619_F15_scaffold_2 1209 1244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21436569..21438224 /note="source:CACAO_M_E12672_F15_scaffold_3 1300 2975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21438225..21438477) /note="source:CACAO_M_E41928_F52_scaffold_5 7840 8135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21438431..21446516 /note="source:INTACT1341F_F15_scaffold_8-int 2979 11066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21446510..21449315 /note="source:CACAO_M_S_E5162_F13_scaffold_1 9501 11930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21446517..21446583) /note="source:CACAO_M_E58167_F15_scaffold_9 7827 8101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21449316..21450510) /note="source:scaffold_2_CACTA_0261 1782 2920" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21450426..21450527) /note="source:CACAO_M_E59638_F319_scaffold_9 4984 5084" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21452259..21455895) /locus_tag="TCM_044984" /note="dbxref CacaoGD:Thecc1EG044984" mRNA complement(join(21452259..21452642,21453368..21453441, 21453530..21453604,21453714..21454294,21455851..21455895)) /locus_tag="TCM_044984" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(21452423..21452642,21453368..21453441, 21453530..21453604,21453714..21453719)) /locus_tag="TCM_044984" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19708.1" /translation="MEQRSARFRGNLVTCKPPNPWVSSGFKHMNVNCGACKLRKILDG GRFIIAARHGWGHGLPYTYVDRPQDVMRSCDRLISPMLANIVETAMVFGSNVRRVNEF LFYHLLESKISLGFSNSYFYAW" mobile_element complement(21453369..21453452) /note="source:INTACT88_F12_scaffold_4-int 11885 11966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21456902..21458553 /note="source:INTACT56_F124_scaffold_1-int 6487 8195" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21457392..21459840) /note="source:CACAO_M_E22999_F228_scaffold_4 1 2410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21462792..21462891) /note="source:INTACT88_F12_scaffold_4-int 12388 12489" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21463020..21463147) /note="source:INTACT88_F12_scaffold_4-int 12294 12412" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21463172..21464554) /note="source:CACAO_M_E58601_F7_scaffold_9 4313 5673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21463900..21465488) /note="source:scaffold_2_CACTA_0261 1782 3282" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21466976..21467442) /note="source:CACAO_M_E47740_F12_scaffold_6 6254 6719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21467443..21468093) /note="source:CACAO_M_E10603_F306_scaffold_2 7124 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21468095..21470817) /note="source:INTACT765_F324_scaffold_1-int 2986 5715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21471030..21473957) /note="source:CACAO_M_E10603_F306_scaffold_2 4838 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21473960..21474735) /note="source:CACAO_M_E9677_F7_scaffold_2 8637 9414" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21474726..21476299) /note="source:CACAO_M_S_E50960_F369_scaffold_4 9480 11055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21476293..21476699 /note="source:INTACT95_F143_scaffold_9-int 9890 10296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21476714..21476827 /note="source:INTACT598_F89_scaffold_2-int 4877 4992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21476725..21476918) /note="source:INTACT1223F_F374_scaffold_6-int 4762 4955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21476918..21485716) /note="source:INTACT743_F318_scaffold_2-int 2 8797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21486451..21487039) /note="source:CACAO_M_S_E118957_F7_scaffold_9 1 586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21487045..21488319) /note="source:CACAO_M_S_E118957_F7_scaffold_9 1 1304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21488321..21489577) /note="source:CACAO_M_S_E4591_F5_scaffold_1 5826 7094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21496902..21499895) /note="source:CACAO_M_S_E120133_F7_scaffold_10 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21500137..21500549) /note="source:INTACT88_F12_scaffold_4-int 13579 13995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21500549..21500974) /note="source:INTACT88_F12_scaffold_4-int 12400 12828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21501086..21501169 /note="source:INTACT95_F143_scaffold_9-int 7607 7679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21501133..21502674) /note="source:CACAO_M_S_E50960_F369_scaffold_4 10044 11587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21502660..21503387) /note="source:CACAO_M_E9677_F7_scaffold_2 6467 7196" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21503386..21505895) /note="source:CACAO_M_E69554_F279_scaffold_9 1 2494" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21505898..21507246 /note="source:INTACT745_F320_scaffold_4-int 6690 8065" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21515156..21518203 /locus_tag="TCM_044990" /note="dbxref CacaoGD:Thecc1EG044990" mRNA join(21515156..21516610,21516747..21517280, 21517400..21518203) /locus_tag="TCM_044990" /product="Leucine-rich repeat transmembrane protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03530.1" /inference="similar to AA sequence:Phytozome:GSVIVT01024236001" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(21515680..21516610,21516747..21517280, 21517400..21518004) /locus_tag="TCM_044990" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase family protein, putative" /protein_id="EOY19709.1" /db_xref="Phytozome:GSVIVT01024236001" /db_xref="TAIR:AT1G68400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T7C7" /translation="MQRSFHSPKHRFSSDDRRGKSLHLIISPIQTAAMNLALILLLSL LSSITLCSSVLALIPIIGNYYPIERDALLQLRDSVASPKLHSNWTGPPCMNNQSRWGG IACSDGHVVRLVLDGIQLTGSLPPAFLQNISFLTKLSLRNNSAFGPLPSLTNLIQLEY VFLSHNLFTDSIPFDYIQLPNLKKIELQQNYLQGEIPPFNQQNLVAFNVSYNSLQGPI PQTDVLQRFPESSYQHNSGLCGNPLEKKCPVPPNPSITPTPSPPDSSKKSFEARNLAL IVAASVLVPFVVIFVFLCYYKRVQRKETTKRKKAARILFHSESSASVKSTPSYLAQYI GIILGENAVQFDIFLPFSYFPPQTGDTSIELAEKKMSSSQSTEDPERTVELEFFDKNI PVFDLEDLLRASAEVLGKGKLSTTYKATLESGLVVAVKRIKSMNSLSKKEFVQQMQLL GKLRHENLAQIISFYNSKDEKLIIYEFVPNGNLFELLHENRGAGRVPLNWTTRLAIIK GVAMGMNFLHQYLSSHKVPHANLKSSNVLIHRQSQNYHSKVTDFGYYPLLPSRKSLER LAIARSPEFSQAKKLTHKADVYCFGIILLEIITGRIPGDEISEGNHDKRADGLSEWVT AVVNNDWSTDILDVEIVATREAHDEMLKFTELALECTDVAPEKRPKMSQVLRRIQEIE QRSSESH" mobile_element complement(21523399..21523480) /note="source:CACAO_M_E870_F22_scaffold_1 1375 1455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21523603..21523679 /note="source:CACAO_M_E870_F22_scaffold_1 1378 1454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21523645..21525398) /note="source:scaffold_6_CACTA_0702 9864 11615" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21527281..21529064 /note="source:scaffold_5_CACTA_0585 12612 14387" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21530122..21530906) /note="source:scaffold_5_CACTA_0591 14673 15450" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21531351..21532091) /note="source:CACAO_M_E3248_F5_scaffold_1 2939 3653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21532245..21532584 /note="source:INTACT280_F60_scaffold_5-int 10399 10748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21532528..21533261) /note="source:CACAO_M_E3248_F5_scaffold_1 1644 2355" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21533252..21533782 /note="source:CACAO_M_E43428_F369_scaffold_5 3711 4241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21533788..21533999) /note="source:INTACT745_F320_scaffold_4-int 3142 3351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21533826..21534266 /note="source:CACAO_M_E5800_F12_scaffold_2 4411 4850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21534247..21534317) /note="source:INTACT183F_F349_scaffold_3-int 1 71" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21534318..21535450 /note="source:scaffold_4_CACTA_0490 8641 9756" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21536285..21537206 /note="source:scaffold_5_CACTA_0585 12610 13524" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21537207..21538631) /note="source:CACAO_M_S_E120119_F9_scaffold_10 1 1425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21538632..21539483 /note="source:scaffold_5_CACTA_0585 13520 14371" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21539895..21540026) /note="source:INTACT904F_F49_scaffold_6-int 101 194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21540022..21540073 /note="source:scaffold_1_CACTA_0024 4762 4814" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21540031..21541106) /note="source:INTACT1625F_F66_scaffold_10-int 779 1864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21541816..21544527 /note="source:scaffold_1_CACTA_0024 6040 8748" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21545027..21545107) /note="source:scaffold_4_CACTA_0489 8556 8632" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21545268..21548126 /note="source:CACAO_M_E3248_F5_scaffold_1 1652 4497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21548277..21549189 /note="source:CACAO_M_E53095_F15_scaffold_8 1 934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21548520..21550955) /note="source:CACAO_M_S_E88476_F254_scaffold_7 1 2433" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21550845..21550972 /note="source:scaffold_9_CACTA_0929 17792 17921" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21551385..21551416) /note="source:scaffold_5_CACTA_0585 6344 6375" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21551444..21551532 /note="source:scaffold_5_CACTA_0585 6280 6359" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21551868..21554406) /note="source:CACAO_M_E42691_F9_scaffold_5 3326 5920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21555843..21556022 /note="source:scaffold_5_CACTA_0585 6315 6514" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21559795..21560013) /note="source:INTACT280_F60_scaffold_5-int 10533 10755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21560476..21561331) /note="source:scaffold_5_CACTA_0585 12464 13330" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21561980..21564892 /note="source:INTACT597_F267_scaffold_2-int 5756 8677" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21566351..21575698) /note="source:CACAO_M_E34534_F369_scaffold_5 1083 10481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21577240..21577356 /note="source:scaffold_5_CACTA_0591 6357 6474" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21578569..21578619) /note="source:CACAO_M_E42395_F3_scaffold_5 5559 5603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21578581..21579460 /note="source:CACAO_M_E52239_F256_scaffold_7 5546 6416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21579378..21579479) /note="source:CACAO_Mariner_E180_scaffold_6 4481 4573" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(21579457..21582237) /note="source:CACAO_M_E85576_F96_scaffold_11 1 4314" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21583437..21585551) /locus_tag="TCM_044995" /note="dbxref CacaoGD:Thecc1EG044995" mRNA complement(join(21583437..21584077,21585482..21585551)) /locus_tag="TCM_044995" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012927t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(21583822..21584077,21585482..21585489)) /locus_tag="TCM_044995" /note="paralog of Thecc1EG012927t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19710.1" /translation="MLRMRHYYFANDYQTWKQIEDGPHKIEKDMVNWNSHDLDLIELN AKAMLTIFSALGEKQYNQVQNYGNAKEIWDKLDKLYDNQLREN" mobile_element 21585574..21585645 /note="source:CACAO_M_S_E84376_F22_scaffold_6 21103 21180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21585796..21586888) /note="source:INTACT125_F13_scaffold_10-int 1 1119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21589575..21592898) /note="source:CACAO_M_S_E16543_F3_scaffold_2 4851 8191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21592878..21592973) /note="source:INTACT265_F12_scaffold_7-int 12975 13068" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21592898..21595389 /note="source:INTACT676_F297_scaffold_3-int 7729 10220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21595390..21598291) /note="source:INTACT7_F3_scaffold_8-int 1898 4853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21598292..21598825) /note="source:INTACT410F_F357_scaffold_4-int 1871 2397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21598819..21599185 /note="source:scaffold_4_CACTA_0493 3806 4212" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21599195..21599622 /note="source:scaffold_4_CACTA_0493 3965 4441" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21599237..21599625) /note="source:CACAO_M_E24592_F195_scaffold_4 20380 20776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21599300..21601386) /note="source:CACAO_Mariner_E180_scaffold_6 6249 8287" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(21601387..21601854) /note="source:INTACT410F_F357_scaffold_4-int 1425 1886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21601855..21609939) /note="source:scaffold_2_CACTA_0259 4 8088" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21606009..21610574 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15135 19665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21610572..21613444) /note="source:CACAO_M_E70174_F15_scaffold_10 1 2873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21613445..21614618 /note="source:CACAO_M_S_E146050_F335_scaffold_11 1416 2608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21614619..21616051) /note="source:CACAO_M_S_E4413_F3_scaffold_1 1 1428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21616180..21616227 /note="source:scaffold_8_CACTA_0859 658 706" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21616634..21617841) /note="source:CACAO_M_E35511_F5_scaffold_5 8740 9918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21624415..21625131) /note="source:CACAO_M_E58324_F9_scaffold_9 9491 10224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21625120..21625647) /note="source:CACAO_M_E1841_F5_scaffold_1 4213 4672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21625605..21626740) /note="source:scaffold_2_CACTA_0261 1782 2910" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21626699..21626753) /note="source:CACAO_M_E1841_F5_scaffold_1 8329 8383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21627965..21631853 /note="source:CACAO_M_E33933_F9_scaffold_4 1 3866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21631859..21632853 /note="source:scaffold_2_CACTA_0261 1788 2817" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21632838..21632933 /note="source:CACAO_M_E1841_F5_scaffold_1 3078 3180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21633532..21633856 /note="source:CACAO_M_E1841_F5_scaffold_1 10609 10904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21635109..21635676 /note="source:CACAO_M_E1841_F5_scaffold_1 16061 16624" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21635780..21635921) /note="source:CACAO_M_E70891_F369_scaffold_10 1276 1432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21635831..21637055 /note="source:CACAO_M_E1841_F5_scaffold_1 4286 5467" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21637055..21641192) /note="source:INTACT85_F9_scaffold_4-int 7038 11119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21642535..21645470 /note="source:CACAO_M_S_E100714_F7_scaffold_9 1 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21646186..21649095) /note="source:CACAO_M_E70157_F170_scaffold_10 1 2910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21651138..21652526) /note="source:CACAO_M_S_E90022_F9_scaffold_8 5129 6541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21655686..21658049) /note="source:INTACT126_F14_scaffold_3-int 5648 8012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21658040..21658229) /note="source:INTACT30F_F12_scaffold_1-int 8720 8910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21658738..21660271 /note="source:CACAO_M_E53201_F9_scaffold_8 9735 11271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21661769..21662517 /note="source:CACAO_M_E1841_F5_scaffold_1 14430 15171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21662502..21663063 /note="source:CACAO_M_E53201_F9_scaffold_8 11259 11821" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21663070..21667826) /note="source:CACAO_M_E42641_F14_scaffold_5 10428 15206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21665586..21668238 /note="source:INTACT180_F13_scaffold_3-int 3165 5779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21667813..21669086) /note="source:CACAO_M_E42641_F14_scaffold_5 6246 7508" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21669085..21670869) /note="source:CACAO_M_E42641_F14_scaffold_5 4183 5914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21670870..21673619) /note="source:CACAO_M_E70152_F87_scaffold_10 1 2750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21673620..21673653) /note="source:INTACT28_F14_scaffold_3-int 4751 4784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21673653..21674525) /note="source:CACAO_M_E1841_F5_scaffold_1 15772 16662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21674504..21675154) /note="source:CACAO_M_E1841_F5_scaffold_1 15218 15779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21676893..21677012) /note="source:CACAO_M_E1841_F5_scaffold_1 9632 9726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21676988..21681760) /note="source:INTACT28_F14_scaffold_3-int 1 4756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21681761..21682309) /note="source:CACAO_M_S_E90022_F9_scaffold_8 50 602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21682936..21683041) /note="source:CACAO_M_S_E14330_F13_scaffold_2 14685 14777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21682961..21683333 /note="source:INTACT146F_F14_scaffold_2-int 3174 3506" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21683334..21685988) /note="source:CACAO_M_E70144_F369_scaffold_10 1 2655" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21685989..21686900) /note="source:CACAO_M_E3248_F5_scaffold_1 17638 18509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21686707..21688304 /note="source:INTACT146F_F14_scaffold_2-int 4331 5823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21689920..21690275 /note="source:INTACT649F_F368_scaffold_5-int 2 368" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21690338..21691754) /note="source:CACAO_M_E14113_F106_scaffold_3 11046 12012" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21691747..21692040 /note="source:INTACT649F_F368_scaffold_5-int 1993 2286" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21692010..21692892) /note="source:CACAO_M_S_E64832_F14_scaffold_5 3454 4309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21692883..21700520) /note="source:CACAO_M_S_E6076_F9_scaffold_2 1986 9643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21694032..21701457 /note="source:CACAO_M_E4783_F9_scaffold_2 3422 10835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21701455..21702086 /note="source:CACAO_M_E53201_F9_scaffold_8 5021 5652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21704179..21704277) /note="source:INTACT336_F12_scaffold_2-int 9215 9312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21704265..21705295) /note="source:INTACT187_F9_scaffold_2-int 1 1035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21707571..21713386 /note="source:CACAO_M_E4900_F368_scaffold_2 2389 8212" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21713387..21716003 /note="source:CACAO_M_E42691_F9_scaffold_5 3329 5914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21715982..21716076 /note="source:CACAO_M_E4900_F368_scaffold_2 271 365" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21716130..21717891) /note="source:CACAO_M_E14113_F106_scaffold_3 18694 20434" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21718192..21718923 /note="source:CACAO_M_S_E119160_F14_scaffold_9 14337 15069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21718924..21720072 /note="source:INTACT215F_F14_scaffold_3-int 9580 10712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21720756..21722211) /note="source:CACAO_M_S_E65716_F44_scaffold_5 1479 2936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21723604..21723737) /note="source:INTACT146F_F14_scaffold_2-int 13369 13490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21726748..21727090) /note="source:INTACT1432F_F101_scaffold_9-int 13532 13888" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(21727314..21727407) /note="source:CACAO_M_S_E31635_F14_scaffold_3 2377 2470" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21727544..21727610) /note="source:CACAO_M_S_E64832_F14_scaffold_5 10105 10175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21727580..21730553) /note="source:CACAO_M_S_E83372_F14_scaffold_6 19292 22213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21730550..21733331) /note="source:INTACT524_F2_scaffold_3-int 892 3611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21733329..21738873) /note="source:INTACT293_F14_scaffold_5-int 1069 6635" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21744897..21745617) /note="source:CACAO_M_E58324_F9_scaffold_9 1 721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21745675..21748618) /note="source:CACAO_M_E70128_F15_scaffold_10 1 2944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21748657..21748764) /note="source:CACAO_M_E1841_F5_scaffold_1 3073 3180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21748908..21749693) /note="source:CACAO_M_E1841_F5_scaffold_1 14366 15161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21750026..21751334) /note="source:CACAO_M_E1841_F5_scaffold_1 9632 10912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21752670..21752745 /note="source:CACAO_M_E5899_F5_scaffold_2 8893 8963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21754294..21756618 /note="source:scaffold_8_CACTA_0857 1017 3318" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21757642..21758391) /note="source:scaffold_3_CACTA_0382 7866 8615" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21758492..21759683) /note="source:scaffold_3_CACTA_0382 6642 7829" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21759678..21760462 /note="source:INTACT407F_F356_scaffold_4-int 4224 5005" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21761377..21761445) /note="source:scaffold_3_CACTA_0382 1570 1640" /mobile_element_type="transposon:TIR/CACTA" gene complement(21763106..21766140) /locus_tag="TCM_045017" /note="dbxref CacaoGD:Thecc1EG045017" mRNA complement(join(21763106..21763372,21765635..21766140)) /locus_tag="TCM_045017" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" CDS complement(21765646..21765912) /locus_tag="TCM_045017" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19711.1" /translation="MSHITAKPSPPLTSTILPSPIRNALHMAPNIKGITALRHTTFLV KDYHVHTLHHHLRNIPQLDNHGPNPTHHKGSSPAPNPTQFLGLK" gene complement(21766450..21772310) /locus_tag="TCM_045018" /note="dbxref CacaoGD:Thecc1EG045018" mRNA complement(join(21766450..21768304,21772208..21772310)) /locus_tag="TCM_045018" /product="Kinase family protein with leucine-rich repeat domain" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025477001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044848t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s14960.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc2320t1" CDS complement(21766967..21768289) /locus_tag="TCM_045018" /note="paralog of Thecc1EG044848t1" /codon_start=1 /product="Kinase family protein with leucine-rich repeat domain" /protein_id="EOY19712.1" /db_xref="Phytozome:POPTR_0019s14960.1" /db_xref="TAIR:AT1G35710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9INP4" /translation="MLVPLQSSIVFASLAAAAPAKEAETLLKWKASLDNKSQTLLSSW LGDSHCNWVGITCDEAGSMTNLSLPNYVEGLRGTLHSLNFFSFPKLMNLELRNNSLYG PIPSHIGNLSKLIFLDLSYNNFSGNIPSEICLLKSLELISLSNNRITGSIPQEIGRLS SVSYIFFNDNNLSGPIPTSIGSLHNLTTVDLSRNKLSGSIPQKIRRLSLATNILFRDN NLSGPIPTSIGSLHNLMRLDLGNNRLTGHIPGEVGMLRSLNYIDIAGNYLTGNIPESI GNLSKLELFYLYDNKLSGSIPSEIGQLGSLIVLQLLGNYLTGVIPPSIGNLTKLSNLL LSQNMLSGSIPREVAMLKSLSVLALAENNFSGSIPSEIGQLESLSILQWSDNYLTGVI PASIGNLTKLSKLVLSQNKLSGSIPQEVGMLKSLSVLVLAGNNFSGSI" mobile_element 21770350..21771204 /note="source:INTACT642F_F365_scaffold_5-int 1 868" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21772405..21778750 /locus_tag="TCM_045019" /note="dbxref CacaoGD:Thecc1EG045019" mRNA join(21772405..21772949,21778148..21778750) /locus_tag="TCM_045019" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS join(21772460..21772949,21778148..21778194) /locus_tag="TCM_045019" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19713.1" /translation="MAKSPNLSFSFICHVASYPTGFPSLQPINPSTVPLALIDLLPAV GFLKPSYPFTAQIGLLSLYPTTALIKEIGPSLCPRSPLLPFRWLPKSGFPLCRWHYPK DFPPQPITKTPSKSIPKKQAKYPKAKLFCSSPFSLYFFIFFLFFWLWICGCWLLRPGI LFAECGIWKQLPTGEMRS" mobile_element 21774049..21775128 /note="source:CACAO_M_S_E66657_F76_scaffold_5 7298 8381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21775130..21777091) /note="source:CACAO_M_E53388_F15_scaffold_8 4389 6375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21777192..21778297 /note="source:CACAO_M_E84727_F42_scaffold_10 1981 3086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21778298..21778448 /note="source:CACAO_M_S_E66657_F76_scaffold_5 8376 8525" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21778752..21785870) /locus_tag="TCM_045020" /note="dbxref CacaoGD:Thecc1EG045020" mRNA complement(join(21778752..21778974,21781366..21781688, 21782127..21782236,21783100..21783117,21785359..21785870)) /locus_tag="TCM_045020" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(join(21781389..21781688,21782127..21782236, 21783100..21783109)) /locus_tag="TCM_045020" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19714.1" /translation="MVFVIGDQWIAKSGFTRDMGFIRSSLDTIYYFHLRIPKLVQYRE ANVSGASGEDGVMSLSLDMLTRKQGNRLYSDVVVFVSNGAKFVGLVLLSAMMMEMLSQ LVPTVKSMVLVQRWRSSWPCHGPCHVASQRMLEFIMC" mobile_element complement(21782586..21782654) /note="source:scaffold_3_CACTA_0382 1570 1640" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21785929..21785987 /note="source:CACAO_LINE_E_211_scaffold_8 6407 6463" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 21788962..21789252 /note="source:scaffold_8_CACTA_0859 16172 16465" /mobile_element_type="transposon:TIR/CACTA" gene 21794175..21797511 /locus_tag="TCM_045022" /note="dbxref CacaoGD:Thecc1EG045022" mRNA join(21794175..21794525,21794682..21795111, 21795581..21795797,21796508..21797511) /locus_tag="TCM_045022" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5714t1" CDS join(21794462..21794525,21794682..21795111, 21795581..21795797,21796508..21797020) /locus_tag="TCM_045022" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19715.1" /translation="MAEAIVSLAVERISDLLIHEADVIDTFILQAANHGFFHGLTKPF HLHKIRKQVKAIQTKLGDISNSLQTYGISGEGEGSFSAIEMQQRLRRTYSHVEEEDVV SLEGITRHVLAQLMTEEDRLHVVVSIVGMGGIGKTTLARKVYNHIDVKRYFDCFCLGF YISTMSLAQWEMVHRNINAHLNKFQQQDHHYGGVNGILALSYNELPFHLKPCFLYLGH YPEDWRSQKRNSFNYGLQKVKSLIENNATLSLTNIRSLGISFERSKDVEPFLKALIES HRLSSLHIRCTSIPLHDSNLEPLSQCHHLSKLDLRGVILEDPYSSHHVLNFLPANIAK LTLLFCEINQDPMAVLGKLPHLRTLRLLEYSYRGTKMVCSSNEFLQLDFLYISCLEEL EEWQIEKGAMPRCEV" mobile_element complement(21797679..21798882) /note="source:scaffold_1_CACTA_0011 12712 13486" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21798967..21799943) /note="source:INTACT555_F251_scaffold_2-int 10405 11386" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21805380..21808507 /locus_tag="TCM_045023" /note="dbxref CacaoGD:Thecc1EG045023" mRNA join(21805380..21805627,21805738..21805849, 21806300..21806392,21807371..21807403,21807766..21807822, 21807935..21808305) /locus_tag="TCM_045023" /product="Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006687t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19400.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06766t00001; inference alignment:Newbler:10:TSA:cgbaP1_g06766t00001" mRNA join(21805444..21805627,21805738..21805849, 21806300..21806392,21807371..21807403,21807524..21807822, 21807935..21808507) /locus_tag="TCM_045023" /product="Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06720.1" /inference="similar to AA sequence:ricco:30131.m007161" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc336t4; inference alignment:Newbler:10:TSA:cgbaP1_g06766t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc220t1" CDS join(21805458..21805627,21805738..21805849, 21806300..21806392,21807371..21807403,21807766..21807822, 21807935..21808045) /locus_tag="TCM_045023" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG006687t1" /codon_start=1 /product="Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 1" /protein_id="EOY19716.1" /db_xref="Phytozome:POPTR_0003s19400.1" /db_xref="TAIR:AT2G38730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XZG9" /translation="MASGGAGGGGGVEWHVRPPNPKNPIVFFDITIGSIPAGRIKMEL FADIAPKTAENFRQLCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTS IYGHKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFVTCAKCEWLDNKHVVFGRVLGD SLLVVRKIENVATGPNNRPKLPCIIAECGEM" CDS join(21805458..21805627,21805738..21805849, 21806300..21806392,21807371..21807403,21807524..21807822, 21807935..21807974) /locus_tag="TCM_045023" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m007161" /codon_start=1 /product="Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 2" /protein_id="EOY19717.1" /db_xref="TAIR:AT2G38730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BNQ0" /translation="MASGGAGGGGGVEWHVRPPNPKNPIVFFDITIGSIPAGRIKMEL FADIAPKTAENFRQLCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTS IYGHKFEDENFIAKHTGPGLLSMANSGPNTNGCQGHKILQCCYLYQIWVTCISLAAHS QLGELRFHGSMAIANASSTSSFFTWIRFLRVLGKTSIILFTIINFSVILILAFINCSF LSHVQNASGLIISMLYLGGCLEIVFLLFGR" mRNA join(<21805569..21805638,21805739..21805849, 21806300..21806392,21807371..21807403,21807793..21807822, 21807935..21808068) /locus_tag="TCM_045023" /product="Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004971t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06720.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc223t4; inference alignment:Newbler:10:TSA:cgbaP1_g06766t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc220t1" CDS join(<21805570..21805638,21805739..21805849, 21806300..21806392,21807371..21807403,21807793..21807822, 21807935..21808045) /locus_tag="TCM_045023" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG004971t1" /codon_start=1 /product="Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 3" /protein_id="EOY19718.1" /db_xref="Phytozome:POPTR_0001s06720.1" /db_xref="TAIR:AT2G38730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XZG9" /translation="AESKWNSSLILPLKPPKISGPAHQLCTGEYRKAGLPVGYKGCQF HRVIKDFMIQAGDFLKGDGSGCTSIYGHKFEDENFIAKHTGPGLLSMANSGPNTNGCQ WLDNKHVVFGRVLGDSLLVVRKIENVATGPNNRPKLPCIIAECGEM" gene complement(21808918..21813058) /locus_tag="TCM_045025" /note="dbxref CacaoGD:Thecc1EG045025" mRNA complement(join(21808918..21809417,21809627..21813058)) /locus_tag="TCM_045025" /product="Leucine-rich repeat receptor-like protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s14960.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044848t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s14960.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(21809047..21809417,21809627..21812768)) /locus_tag="TCM_045025" /note="paralog of Thecc1EG044848t1" /codon_start=1 /product="Leucine-rich repeat receptor-like protein kinase family protein, putative" /protein_id="EOY19719.1" /db_xref="Phytozome:POPTR_0019s14960.1" /db_xref="TAIR:AT1G35710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9INT0" /translation="MASSSLMFWQYFFFLSLVLIQPFLVFTSSRGNNETEALLRWKAS LDNTSQRLLSSWVGDSPCTWVGIACDKGGSITNLSLPNSGLRGTLRSLNFFSLPNLMG LGLRNNSLYGGLPSQIGNLSKLSFLDLSYNDFSGNIPSEIGLLTSLNVITLGRNHFSG NIPQAIGRLSSVSEIYFYDNNLSGSIPASIGSLQNLSKLYLNGNRLNGSIPVEVGNLS KLIDLELQFNNLSGSIPSEIGNLRSLSQLYLHENYLTGPMPISMGNLQNLSRLILVNN RLNGSIPKEVGMMRSLTMLDFSRNNITGPIPASIGKLTNLVWFYLYRNDLSGSIPDEI GLLASLGTLQLQRNNLTGVIPASIGNLVRLEELYLFANQLSGSIPLTIKNLTRLEIVE LFDNHLSGQLPAQEVGVLESLTSLHVAGNMLFGPIPQEVGMLKSLTVLNLQMNNFSGS IPVSIGNLTRLSYLHLSYNHLSDPIPPTLNNLTHLESLQLTENHLSGQLPENVCINGL LSRLIAHNNNLTGQIPLSLRNCTSLVRVRLHGNQLTGNISEAFGIYPNLDYMELSNNK FYGELSPNWGQCRNLTSLKISNNNISGVIPVELAQATQLHEIDLSSNHLNDEIPKEFG RLTLLLNLLLNGNKLSGKIPVEIGRLSNLKHLNLASNNLTGRIPEQLGECIKLVKLNL SRNQIGESIPSTIGNIYALEALDLSHNLLIGEIPRPFGKLQNLELLNLSHNMLSGFIP SSFDDWRSLTAVDLSHNLLEGPLPDRKAFHNAPFDAYRNNRGLCGNATGLIPCDPTPT NKAQKRKTNRVVVLIVLPILGTLVGLFILVGGFLILFRRIWKRKFKPKEEQSEDIFAI WGYDGEILYESIIEATEDFSSTYCIGSGGYGNVYRVVLPTGRVVAVKKLHQSEDCMPI NLKAFQSEIRVLASIRHRNIVKLYGFCTNAEHSFLVYELVERGCLRMVLSVEEKAMEF DWNKRLNVVRGLANALSYMHHDCSPSIIHRDISSNNVLLDLDYEAHVSDFGTARLLKP DSSNWTSVAGTFGYVAPELAYTMEVNEKCDVYSFGVVALEILMGRHPGDLISSLSSSS SSSSQPNCQQSLLKDVIDQRLSLPVDDVENNVVSVAKLAFACLHINRQLRPTMLQVSQ ALASQRLRLSKPLLMIELRELFCY" mobile_element complement(21817083..21819745) /note="source:CACAO_M_S_E120007_F369_scaffold_10 1 2663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21819671..21819755 /note="source:CACAO_M_E70891_F369_scaffold_10 12333 12419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21820242..21821073) /note="source:CACAO_Again_on_S_E199_scaffold_6 1 829" /mobile_element_type="transposon:TIR/hAT" gene 21820552..21824196 /locus_tag="TCM_045026" /note="dbxref CacaoGD:Thecc1EG045026" mRNA join(21820552..21820595,21821058..21821169, 21821241..21821462,21823660..21824196) /locus_tag="TCM_045026" /product="LYR family of Fe/S cluster biogenesis protein" /inference="alignment:exonerate- protein:2:ricco:30131.m007162" /inference="similar to AA sequence:ricco:30131.m007162" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11183t00001" CDS join(21820591..21820595,21821058..21821169, 21821241..21821462,21823660..21823845) /locus_tag="TCM_045026" /note="dbxref ricco:30131.m007162" /codon_start=1 /product="LYR family of Fe/S cluster biogenesis protein" /protein_id="EOY19720.1" /db_xref="TAIR:AT3G12260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GS72" /translation="MWLAPPLSPAKAASRSKDRFTETSDNVLGFWSLPIDSSCTTHMA FTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE IRKNSHVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGRQGLVQDLNTKDEG MSDFLKNFYKSNYF" gene complement(21824558..21827171) /locus_tag="TCM_045027" /note="dbxref CacaoGD:Thecc1EG045027" mRNA complement(join(21824558..21826040,21827122..21827171)) /locus_tag="TCM_045027" /product="Transcription elongation factor (TFIIS) family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s01830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016608t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09640.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(21824759..21825814) /locus_tag="TCM_045027" /note="paralog of Thecc1EG016608t1" /codon_start=1 /product="Transcription elongation factor (TFIIS) family protein, putative" /protein_id="EOY19721.1" /db_xref="Phytozome:POPTR_0003s09640.1" /db_xref="TAIR:AT1G32130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ICK8" /translation="MDSNQVRRQKRRASERSKDVKEMWEFLTSDQNNQQTHSDNVKQT KYEVDVEIEEMFDRVKRRKKMEEKSPRETALLAEKVMAMLEVAAEDDAELIRQEKPAI NKIQMLPLLLDFLSKRKLQGEFLDHGVLSLLKNWLEPLPDGSLPNATLRAAILNMLTQ VLPIDIEREDRREQLKKSGLGKVIMFLSKSDEEITANKRLAKDLIEHWSRTIFSKSVQ FSDLRYIEENMAVPFRKPSLKKPEKQQAPLTMEPVRVADFDLELDLRITKASDDKSSS SQQRASRPEATPSVYLVRPQSNFNPHIVKSYRRQQVKGDRRARIEERLKRLKRSNKKP LQTAKLGAQGRGIFTYL" mobile_element 21827350..21827419 /note="source:CACAO_M_E70891_F369_scaffold_10 2650 2719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21827426..21827616) /note="source:CACAO_M_S_E85957_F12_scaffold_7 14645 14833" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21833817..21840227) /locus_tag="TCM_045028" /note="dbxref CacaoGD:Thecc1EG045028" mRNA complement(join(21833817..21834840,21834951..21835028, 21835324..21835406,21835517..21835682,21836083..21836137, 21836222..21836288,21836379..21836460,21837027..21837184, 21837416..21837560,21837861..21837920,21838032..21838310, 21839746..21839794,21840001..21840227)) /locus_tag="TCM_045028" /product="BUB1-related" /inference="alignment:exonerate- protein:2:ricco:30170.m013724" /inference="similar to AA sequence:ricco:30170.m013724" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02928t00001" CDS complement(join(21834777..21834840,21834951..21835028, 21835324..21835406,21835517..21835682,21836083..21836137, 21836222..21836288,21836379..21836460,21837027..21837184, 21837416..21837560,21837861..21837920,21838032..21838310, 21839746..21839794,21840001..21840184)) /locus_tag="TCM_045028" /note="dbxref ricco:30170.m013724" /codon_start=1 /product="BUB1-related" /protein_id="EOY19722.1" /db_xref="TAIR:AT2G33560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IFV2" /translation="MRKAVRGSSILALAMPLLMLQYETIDSSPTTHMVGDDNGWNPSI SLEGWTRGKNFHAGDILRLETKILKINFIKSNFRSRCINSKFELSVSSFLARFLFSKP TKKKQSSSSQAMDPETEFLTSKRETSNEWELFKENVRPLKRGRNVDLLNHALKAHTND QVKKSLLENRRRLIEAIDEYKGEDPLQPWLDCIKWVQEAFPPGGDFSGLVLIYEQCVR AFWHSDRYKDDLRYLKVWLEYAEHCSDAEVIYNFLDANDIGKTHSAYYMAYALHMESK SKMKAANDIFNLGIASNAQPIEKLRDAYKKFLARSMRMPKANEEALKEDDLPVRSFGT VLARGENQRQTSKSFDHGGNKLKPDQVHRTPFSIYNDTNLDVMTGHRSKPKTDSTSWH TLGARAERNKENNAMPAKWTSYKIPQRPLPRTTGPAASAHIEVFVDEECAEKPEVHDN KERASSLQLRELDGRNIKKETELLRENPLRNFPSNSLPR" gene 21842448..21843286 /locus_tag="TCM_045029" /note="dbxref CacaoGD:Thecc1EG045029" mRNA 21842448..21843286 /locus_tag="TCM_045029" /product="CP12 domain-containing protein 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013447001" /inference="similar to AA sequence:ricco:30170.m014244" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07807t00001" CDS 21842615..21843022 /locus_tag="TCM_045029" /note="dbxref ricco:30170.m014244" /codon_start=1 /product="CP12 domain-containing protein 3" /protein_id="EOY19723.1" /db_xref="TAIR:AT1G76560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GPM1" /translation="MATLTFHSLTGNLERIPASCSCSNPRMSASFHCNSRGEKRVSRM KVKAMGAAKYKGTQMREKQLAEMIEKKVTEAKEVCEGDETSDECKVAWDEVEEVSQAK ADLRLRLEIEKKDPLEFFCQENPETEECRVYED" gene complement(21843711..21851890) /locus_tag="TCM_045030" /note="dbxref CacaoGD:Thecc1EG045030" mRNA complement(join(21843711..21847768,21848203..21851186, 21851309..21851890)) /locus_tag="TCM_045030" /product="U5 small nuclear ribonucleoprotein helicase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g18490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014243t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17857t1" mRNA complement(join(21843762..21847768,21848203..21850096, 21850439..21851333)) /locus_tag="TCM_045030" /product="U5 small nuclear ribonucleoprotein helicase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g18490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014243t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s10750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc24t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17857t1" CDS complement(join(21844190..21847768,21848203..21850096, 21850439..21851154)) /locus_tag="TCM_045030" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014243t1" /codon_start=1 /product="U5 small nuclear ribonucleoprotein helicase, putative isoform 2" /protein_id="EOY19725.1" /db_xref="Phytozome:POPTR_0015s10750.1" /db_xref="TAIR:AT1G20960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A3AMK8" /translation="MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPE SLWGKIDPRSFGDRVYKGRPLELDEKLKKSKKKKERDPLAEPVPVRKTKRRRLHEESV LSVTEEGVYQPKTKETRAAYEAMLSLIQQQLGGQPLNIVSGAADEILAVLKNEGIKNP DKKKEIEKLLNPIPSQVFDQLVSIGKLITDYQDGGEGGGGSMGNGDDGLDDDVGVAVE FEENEDEEEESDLDMVQEDEDEDQEERKKIEEEMMSLGPDLAAILEQLHATRATAKER QKNLEKSIREEARRLKDESVGDGDRDRRGLADRDTDGGWLKGQRQLLDLDSLAFEQGG LLMANKKCELPMGSYKHHAKGYEEVHVPAPKSKPLESDERLVKISEMPEWAQPAFKGM QQLNRVQSKVYETALFAADNILLCAPTGAGKTNVAVLTILQQLALNMDSDGSINHSNY KIVYVAPMKALVAEVVGNLSHRLEAYGVTVRELSGDQTLTRQQIDETQIIVTTPEKWD IITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS ATLPNYEDVALFLRVDLKEGLFHFDNSYRPVPLSQQYIGITVKKPLQRFQLMNDICYE KVMAVAGKHQVLIFVHSRKETTKTARAVRDTALANDTLSRFLKEDAASREILQSHTDM VKSNDLKDLLPYGFAIHHAGLARTDRQIVEELFADGHVQVLVSTATLAWGVNLPAHTV IIKGTQIYSPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMN QQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWITYTYLYVRMLRNPTLYGLPADV LSRDLTLDERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTIST YNEHLKPTMGDIELYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKESLEEPSAK INVLLQAYISQLKLEGLSLTSDMVYITQSAGRLLRALFEIVLKRGWAQLAEKALNLCK MVTKRMWNVQTPLRQFHGIPNEILMKLEKKDLAWDRYYDLSSQEIGELIRFQKMGRTL HRFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPFWVIVEDNDGEY VLHHEYFLLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTILPVSFRHLI LPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVLVA APTGSGKTICAEFAILRNHQKGPDSIMRVVYIAPLEAIAKERYRDWEKKFGRGLGMRV VELTGETSMDLKLLEKGQIVISTPEKWDALSRRWKQRKYVQQVSVFIVDELHLIGGQG GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPV PLEIHIQGVDIANFEARMQAMTKPTYTAVVQHAKNGKPAIVFVPTRKHVRLTAVDLMS YSKVDNEEPAFRLRSAEELKPFVDKISEETLRTTLEHGVGYLHEGLNSLDQEVVSQLF EAGWIQVCVMSSSLCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRP LLDNSGKCVILCHAPRKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVALVIENKQDAV DYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTLTDLEASKCITIEDDMDL SPLNLGMIASYYYISYTTIERFSSSLTSKTKMKGLLEILASASEYAQLPIRPGEEDVL RRLINHQRFSFENPRCTDPHVKANALLQAHFTRQHVGGNLALDQREVLLYATRLLQAM VDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKNIET IFDLVEMEDDERRELLQMSDLQLLDIAKFCNRFPNIDLSYDVLEGENVRAGENVTLQV TLERDLEGRTEVGPVDAPRYPKAKEEGWWLVVGETRSNQLLAIKRVSLQRKAKVKLEF AAPTEAAKKAYTLYFMCDSYLGCDQEYNFTVDAKEAAGPDEDSGKE" CDS complement(join(21844190..21847768,21848203..21851154)) /locus_tag="TCM_045030" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014243t1" /codon_start=1 /product="U5 small nuclear ribonucleoprotein helicase, putative isoform 1" /protein_id="EOY19724.1" /db_xref="Phytozome:POPTR_0015s10750.1" /db_xref="TAIR:AT1G20960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A3AMK8" /translation="MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPE SLWGKIDPRSFGDRVYKGRPLELDEKLKKSKKKKERDPLAEPVPVRKTKRRRLHEESV LSVTEEGVYQPKTKETRAAYEAMLSLIQQQLGGQPLNIVSGAADEILAVLKNEGIKNP DKKKEIEKLLNPIPSQVFDQLVSIGKLITDYQDGGEGGGGSMGNGDDGLDDDVGVAVE FEENEDEEEESDLDMVQEDEDDDDDGVENGAGAMQMGGGIDDDDMHEANEGMSLNVQD IDAYWLQRKISQAYDQQIDPQQCQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLI KYLLRNRLKVVWCTRLARAEDQEERKKIEEEMMSLGPDLAAILEQLHATRATAKERQK NLEKSIREEARRLKDESVGDGDRDRRGLADRDTDGGWLKGQRQLLDLDSLAFEQGGLL MANKKCELPMGSYKHHAKGYEEVHVPAPKSKPLESDERLVKISEMPEWAQPAFKGMQQ LNRVQSKVYETALFAADNILLCAPTGAGKTNVAVLTILQQLALNMDSDGSINHSNYKI VYVAPMKALVAEVVGNLSHRLEAYGVTVRELSGDQTLTRQQIDETQIIVTTPEKWDII TRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT LPNYEDVALFLRVDLKEGLFHFDNSYRPVPLSQQYIGITVKKPLQRFQLMNDICYEKV MAVAGKHQVLIFVHSRKETTKTARAVRDTALANDTLSRFLKEDAASREILQSHTDMVK SNDLKDLLPYGFAIHHAGLARTDRQIVEELFADGHVQVLVSTATLAWGVNLPAHTVII KGTQIYSPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQ LPIESQFVSKLADQLNAEIVLGTVQNAREACNWITYTYLYVRMLRNPTLYGLPADVLS RDLTLDERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYN EHLKPTMGDIELYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKESLEEPSAKIN VLLQAYISQLKLEGLSLTSDMVYITQSAGRLLRALFEIVLKRGWAQLAEKALNLCKMV TKRMWNVQTPLRQFHGIPNEILMKLEKKDLAWDRYYDLSSQEIGELIRFQKMGRTLHR FIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPFWVIVEDNDGEYVL HHEYFLLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTILPVSFRHLILP EKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVLVAAP TGSGKTICAEFAILRNHQKGPDSIMRVVYIAPLEAIAKERYRDWEKKFGRGLGMRVVE LTGETSMDLKLLEKGQIVISTPEKWDALSRRWKQRKYVQQVSVFIVDELHLIGGQGGP VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPL EIHIQGVDIANFEARMQAMTKPTYTAVVQHAKNGKPAIVFVPTRKHVRLTAVDLMSYS KVDNEEPAFRLRSAEELKPFVDKISEETLRTTLEHGVGYLHEGLNSLDQEVVSQLFEA GWIQVCVMSSSLCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLL DNSGKCVILCHAPRKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVALVIENKQDAVDY LTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTLTDLEASKCITIEDDMDLSP LNLGMIASYYYISYTTIERFSSSLTSKTKMKGLLEILASASEYAQLPIRPGEEDVLRR LINHQRFSFENPRCTDPHVKANALLQAHFTRQHVGGNLALDQREVLLYATRLLQAMVD VISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKNIETIF DLVEMEDDERRELLQMSDLQLLDIAKFCNRFPNIDLSYDVLEGENVRAGENVTLQVTL ERDLEGRTEVGPVDAPRYPKAKEEGWWLVVGETRSNQLLAIKRVSLQRKAKVKLEFAA PTEAAKKAYTLYFMCDSYLGCDQEYNFTVDAKEAAGPDEDSGKE" gene 21851978..21855672 /locus_tag="TCM_045031" /note="dbxref CacaoGD:Thecc1EG045031" mRNA join(21851978..21852558,21852744..21853320, 21853403..21853523,21853627..21855672) /locus_tag="TCM_045031" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:ricco:29929.m004672" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011263t1" /inference="similar to AA sequence:ricco:29929.m004511" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS join(21852522..21852558,21852744..21853320, 21853403..21853523,21853627..21855546) /locus_tag="TCM_045031" /note="dbxref ricco:29929.m004511; paralog of Thecc1EG011263t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY19726.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RM08" /translation="MSKFPHLQSLKFVQLFFGFTSLQASLLDPNSSNSSATCNEIERK ALLRFKAGLKDHSGRLSSWFGKDCCTWSGVGCNKLTGHVTKLDLKNPYDHPYQQSASV VVAFELARLGGKINPSLLVLRHLNYLDLSLNNFQNTPIPKFIGSLSKLSYLNLSSASF VGLVPHQLGNLSNLKCLDLYSKPLKDSQNIWVSDLSWIIGFSSLKSCICLSVLSPSAL LSSICELRFHSRPRSSRELLQFFTASMTLDLSSNEMSGELDKFVSSLSKCGNISLEML HLWSNNLSGQLPIPLGHFKNLKSLRLLDNPISSSIPAFIGNLSCMEELYINNGKLNGA IPESIGQLKYLVEIYLEGNWNGVISEAHFLHLKNLKTLYLLSRNKSLKFDVRRDWVPP FSLELIFINYCEIGPNFPTWVKTQRKLRFLSLEEVEISDRIPDWFWEQTLQLRNLRLH NNKVRGRLPKSLKFAPGAFTVDLSSNLFEGPLPLCSSIRILSLRNNSFSGLIPENIGQ KMWMVEYLDLSKNFLSGTIPSSIGKFKKLQVMYLSNNLFSEKIPWWKHLTTFRVLDFS KNNLSGNISSSICSQPRLHILKLSGNNLSGKLTALQNCSGLSELGLGNNQFYGRIPKW IGARLSSLSILSLRGNLFNGNIPQNLCHLFDLHILELRHNNLSRQIPPCLGNLSRLSY LVPYSPQALGYHPVYWNEMEFNVKGRILEFSLILDLVNIIDLSKNNLQGEIPREITNF STLGTLNLSWNQLTGNIPEKIGNMQCLETLDLSCNYLFGPIFSSMLDITSLNHLNLSY NDLSGSIPSTNQFQTFNDPSIYEGNPKLCGYPLPIICSTPKNDQPKSQKDESKAKDMA EVLWFYFYLGMAPGFFLGFWAVLFFFHY" assembly_gap 21856161..21866160 /estimated_length=10000 /gap_type="between scaffolds" gene 21868748..21869354 /locus_tag="TCM_045032" /note="dbxref CacaoGD:Thecc1EG045032" mRNA 21868748..21869354 /locus_tag="TCM_045032" /product="Sigma factor binding protein 1, putative" /inference="alignment:exonerate- protein:2:ricco:30131.m007165" /inference="similar to AA sequence:ricco:30131.m007165" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5737t1" CDS 21868815..21869249 /locus_tag="TCM_045032" /note="dbxref ricco:30131.m007165" /codon_start=1 /product="Sigma factor binding protein 1, putative" /protein_id="EOY19727.1" /translation="MDVQGVRRMKPHKKHSKRSNSKKDIKVVYISSPMKVKTCASQFR ALVQELTGKDSDVSVQFMDNYGSSENSPTHSDVTTTTTERVVDDDRVVRGLPLGNSNH EFSVFEPFDDGLIMEGSFLGMFTSSLLHDPSQLEAVRSFDSI" gene 21870186..21888139 /locus_tag="TCM_045033" /note="dbxref CacaoGD:Thecc1EG045033" mRNA join(21870186..21870406,21872945..21874265, 21876945..21877307,21877428..21877658,21877861..21877986, 21878088..21878424,21878516..21878673,21879680..21879837, 21880749..21880870,21881006..21881140,21883086..21883210, 21883350..21883454,21883552..21883785,21884662..21884995, 21885129..21885317,21885434..21885739,21886055..21888139) /locus_tag="TCM_045033" /product="Kinases,ubiquitin-protein ligases isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036651001" /inference="similar to AA sequence:Phytozome:POPTR_0001s06680.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc99t6" mRNA join(21873075..21874265,21876945..21877307, 21877428..21877658,21877861..21877986,21878088..21878424, 21878516..21878673,21879680..21879837,21880749..21880870, 21881006..21881140,21883086..21883210,21883350..21883454, 21883552..21883785,21884662..21884995,21885129..21885317, 21885434..21885739,21886055..21887047,21887266..>21887287) /locus_tag="TCM_045033" /product="Kinases,ubiquitin-protein ligases isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036651001" /inference="similar to AA sequence:Phytozome:POPTR_0001s06680.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc96t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc99t6" CDS join(21873469..21874265,21876945..21877307, 21877428..21877658,21877861..21877986,21878088..21878424, 21878516..21878673,21879680..21879837,21880749..21880870, 21881006..21881140,21883086..21883210,21883350..21883454, 21883552..21883785,21884662..21884995,21885129..21885317, 21885434..21885739,21886055..21887293) /locus_tag="TCM_045033" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Kinases,ubiquitin-protein ligases isoform 1" /protein_id="EOY19728.1" /db_xref="Phytozome:POPTR_0001s06680.1" /db_xref="TAIR:AT5G13530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FY48" /translation="MKVACCSVCQTRYNEEERVPLLLQCGHGFCKECLSKMFSASLDT SLPCPRCRHVSLVGNSVQALKKNYGILALLDSNSNSGSNLRNDFDCDYTDDEEDDDEE REGDDENGDFFDDLAGGRINRGSHASSSGGAAGCGPVIELSAHPGLRLVRKIEGKGEG KGGRAGVETWAAVISGTQGGAGRSLCKHKVAVKKVGAMEGMDGEWVQGQLDSLRRASM WCRNVCTFHGVVRLEDGSLGIVMDRCHGSIQSAMLNNEGRLTLEQVLRYGADITRGVA ELHAAGVVCMNIKPSNLLLDASGHAVVSDYGLAAILKKPACRKARTEYDSSKIHSCMD CTMLSPHYTAPEAWEPVKKSLNLFWDDAIGISAESDAWSFGCTLVEMCTGFIPWAGLS ADEIYRTVVKARKLPPQYASVVGVGLPRELWKMIGDCLQFKPSKRPTFNAMLAIFLRH LQEIPRSPPASPDNGFAKFPGSNAVEPPPMSDLEVLPENPNHLHRLVSEGDVGGLRDF LAKASYEHSGSSISSLLEAQNADGQTALHLACRRGSAELVEAILEYTEANVDVLDKDG DPPLVFALAAGSPECVLALIRRGADVQSRLRDGFGPSVAHVCAYHGQPDCMRDLLLAG ADPNAVDDEGESVLHRAVAKKYTECALVILENGGCRSMAFLNSKNLTPLHLCVATWNV AVVKRWVEVASPEEIADTIDIPSPVGTALCMAAALKKDHEIEGRELVRILLAAGADCT AQDSQHGRTALHTAAMANDVDLVKIILDAGVDVNIRNVHNTTPLHVALARGATSCVGL LLSAGADCNLQGDEGDNAFHIAADTGKMIRENLEWLIVMLRNPDAAVEVRNHSGKTLR DFLETLPREWISEDLMEALTNRGVHLSPTIFEVGDWVKFRRRITTPTYGWQGARHKSV GFVQNVVDRDNLIVSFCSGEARVLVNEVVKVIPLDRGQHVKLREDVKEPRFGWRGQAR DSIGTVLCVDDDGILRVGFPGASRGWKADPTEMERVEEFKVGDWVRIRPTLTTAKHGL GSVTPGSIGIVYCVRPDSSLLLDLSYLPNPWHCEPEEVEPVTPFRIGDRVCVKRSVAE PRYAWGGETHHSVGRISEIETDGLLMIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVK ASVSSPKYGWEDINRNSIGIIHSLEEDGDMGIAFCFRSKPFICSVTDVEKVPPFEVGQ EVHVVPSVSQPRLGWSNETPATVGKIVRIDMDGALNVKVAGRHSLWKVSPGDAERLSG FEVGDWVRSKPSLGTRPSYDWSTIGKESLAVVHSVQDTGYLELACCFRKGRWSTHFSD VEKVPSYKVGQHVRFRAGLVEPRWGWRGTQSDSRGIITSVHADGEVRVAFFGLSGMWR ADPADLEIEQMFEVGEWVQFRENASTWKSIGPGSVGVVQGIGYEGDEWDGSTIVAFCG EQEKWVGPTSHLERVDKLIIGQKVRVKLSVKQPRFGWSGHSHTSVGTIAAIDADGKLR IYTPVGSKTWMLDPSEVELVEEQELCIGDWVRVRSSVTIPTHHWGEVTHSSVGVVHRM ENGDLWVAFCFMERLWLCKALEMERVRPFEVGDKVRIREGLVTPRWGWGMETHASKGQ VVGVDANGKLRIKFQWREGRPWIGDPADIILDDSSYGMLSTS" CDS join(21873469..21874265,21876945..21877307, 21877428..21877658,21877861..21877986,21878088..21878424, 21878516..21878673,21879680..21879837,21880749..21880870, 21881006..21881140,21883086..21883210,21883350..21883454, 21883552..21883785,21884662..21884995,21885129..21885317, 21885434..21885739,21886055..21887047,21887266..>21887286) /locus_tag="TCM_045033" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kinases,ubiquitin-protein ligases isoform 2" /protein_id="EOY19729.1" /db_xref="Phytozome:POPTR_0001s06680.1" /db_xref="TAIR:AT5G13530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FY48" /translation="MKVACCSVCQTRYNEEERVPLLLQCGHGFCKECLSKMFSASLDT SLPCPRCRHVSLVGNSVQALKKNYGILALLDSNSNSGSNLRNDFDCDYTDDEEDDDEE REGDDENGDFFDDLAGGRINRGSHASSSGGAAGCGPVIELSAHPGLRLVRKIEGKGEG KGGRAGVETWAAVISGTQGGAGRSLCKHKVAVKKVGAMEGMDGEWVQGQLDSLRRASM WCRNVCTFHGVVRLEDGSLGIVMDRCHGSIQSAMLNNEGRLTLEQVLRYGADITRGVA ELHAAGVVCMNIKPSNLLLDASGHAVVSDYGLAAILKKPACRKARTEYDSSKIHSCMD CTMLSPHYTAPEAWEPVKKSLNLFWDDAIGISAESDAWSFGCTLVEMCTGFIPWAGLS ADEIYRTVVKARKLPPQYASVVGVGLPRELWKMIGDCLQFKPSKRPTFNAMLAIFLRH LQEIPRSPPASPDNGFAKFPGSNAVEPPPMSDLEVLPENPNHLHRLVSEGDVGGLRDF LAKASYEHSGSSISSLLEAQNADGQTALHLACRRGSAELVEAILEYTEANVDVLDKDG DPPLVFALAAGSPECVLALIRRGADVQSRLRDGFGPSVAHVCAYHGQPDCMRDLLLAG ADPNAVDDEGESVLHRAVAKKYTECALVILENGGCRSMAFLNSKNLTPLHLCVATWNV AVVKRWVEVASPEEIADTIDIPSPVGTALCMAAALKKDHEIEGRELVRILLAAGADCT AQDSQHGRTALHTAAMANDVDLVKIILDAGVDVNIRNVHNTTPLHVALARGATSCVGL LLSAGADCNLQGDEGDNAFHIAADTGKMIRENLEWLIVMLRNPDAAVEVRNHSGKTLR DFLETLPREWISEDLMEALTNRGVHLSPTIFEVGDWVKFRRRITTPTYGWQGARHKSV GFVQNVVDRDNLIVSFCSGEARVLVNEVVKVIPLDRGQHVKLREDVKEPRFGWRGQAR DSIGTVLCVDDDGILRVGFPGASRGWKADPTEMERVEEFKVGDWVRIRPTLTTAKHGL GSVTPGSIGIVYCVRPDSSLLLDLSYLPNPWHCEPEEVEPVTPFRIGDRVCVKRSVAE PRYAWGGETHHSVGRISEIETDGLLMIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVK ASVSSPKYGWEDINRNSIGIIHSLEEDGDMGIAFCFRSKPFICSVTDVEKVPPFEVGQ EVHVVPSVSQPRLGWSNETPATVGKIVRIDMDGALNVKVAGRHSLWKVSPGDAERLSG FEVGDWVRSKPSLGTRPSYDWSTIGKESLAVVHSVQDTGYLELACCFRKGRWSTHFSD VEKVPSYKVGQHVRFRAGLVEPRWGWRGTQSDSRGIITSVHADGEVRVAFFGLSGMWR ADPADLEIEQMFEVGEWVQFRENASTWKSIGPGSVGVVQGIGYEGDEWDGSTIVAFCG EQEKWVGPTSHLERVDKLIIGQKVRVKLSVKQPRFGWSGHSHTSVGTIAAIDADGKLR IYTPVGSKTWMLDPSEVELVEEQELCIGDWVRVRSSVTIPTHHWGEVTHSSVGVVHRM ENGDLWVAFCFMERLWLCKLLWHAQH" gene complement(21889093..21894160) /locus_tag="TCM_045034" /note="dbxref CacaoGD:Thecc1EG045034" mRNA complement(join(21889093..21889369,21890642..21890725, 21891733..21891944,21892937..21892947,21893687..21894160)) /locus_tag="TCM_045034" /product="Nudix hydrolase" /inference="alignment:exonerate- protein:2:ricco:30131.m007168" /inference="similar to AA sequence:Phytozome:GSVIVT01036652001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4707t2" CDS complement(join(21889127..21889369,21890642..21890725, 21891733..21891944,21892937..21892947,21893687..21893757)) /locus_tag="TCM_045034" /codon_start=1 /product="Nudix hydrolase" /protein_id="EOY19730.1" /db_xref="Phytozome:GSVIVT01036652001" /db_xref="TAIR:AT3G12600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LHK1" /translation="MSDLVARTGRLQQRYEAGCRLVAGLKVGFDLWEHLLSLRSFVKI LFRTDLHVLKPLFTLDRCIPFRYRSSDETDVNSEKVVEVLMINSTSGPGLLFPKGGWE NDETVEEAAVREAIEEAGVKGDLMDFIGYYHFKSKTHQDEFSPEGLCRAAMFALFVKE ELDSWPEQSTRTRSWLTIPEAVQSCRHAWMKEALEDGFCVWLAQRD" mobile_element complement(21895634..21898723) /note="source:CACAO_M_S_E120006_F51_scaffold_10 1 3090" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21898138..21939434 /locus_tag="TCM_045037" /note="dbxref CacaoGD:Thecc1EG045037" mRNA join(21898138..21898216,21899123..21899183, 21908631..21909279,21909366..21909479,21909666..21909743, 21909903..21909992,21911508..21911582,21911687..21911842, 21911954..21912028,21914663..21914824,21914898..21915044, 21915238..21917250,21920992..21921168,21921777..21922411, 21939213..21939434) /locus_tag="TCM_045037" /product="Receptor like protein 15, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g020030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045041t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01150.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10092t25" mobile_element 21900211..21900337 /note="source:CACAO_M_E58230_F143_scaffold_9 1658 1778" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(21909207..21909279,21909366..21909479, 21909666..21909743,21909903..21909992,21911508..21911582, 21911687..21911842,21911954..21912028,21914663..21914824, 21914898..21915044,21915238..21917250,21920992..21921168, 21921777..21921889) /locus_tag="TCM_045037" /note="paralog of Thecc1EG045041t1" /codon_start=1 /product="Receptor like protein 15, putative" /protein_id="EOY19731.1" /db_xref="Phytozome:POPTR_0005s01150.1" /db_xref="TAIR:AT1G74170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NH44" /translation="MGNISSLKALYLRGNNLGGTVRIHDLSSNLFRNNTFAFLRGLSS LKSLDMSRNQLQGSIDTEELNNLTNLKNLDLSENRIESLLPLYQGTTHLHSFVLSSLK SLDMSGNQLQGSIDTEELNNLINLKKLDLHWNKIESLRSFQGSGRQLELTHLEELDLS DNLFNNSIFASLRGLSNLKSLYIRFNQLKGSIDMEDLSAFTNLGELDMSYNELNKFVA HKGNRSLRKLKILHLDNVFMTNGNMTSLPGLLEAFSSVKTFYLEENYFNKSMAFSSEL HMSSNVEEIFLDYSYINSNILKSIGVLTSLKTLSLSDCGLIGTLPDQGWCDLKNFEEL CISRNALQGNLPSCLGNLTSLRVLDISDNHFTGNLSPLTNFTSLRFLSLSTNHFQVPA SFISLANLTDLKILLSDGNKLVMEPVFQTSVPKFQLKMMSLSKCSTDQGLIKELPMFL YYQYDLRYVDLSYNKFSGMLPFWLLENNTKLEELILTDNFFTGPLLFPPFPHLEASSI DISNNKIQAQISADICSAFPHLGQLSLSTNAFRGNIPPCLGGMSHLYSLDLSNNQLSG GVPEELSMSRSLEVLRLSNNNLSGKVVPTILKSKFLGELYLDGNNFAGQRLDIDVLAV DFPYFLQGIDLSNNSLSGELPRWIWNFSYLERLDLSNNHFEGSIPMELCNLDNLEFLD LSQNNLSGCIPSCFNPPSIKHVHLSKNRLSGPLTRALYSSSSLVTLDLRANKLTGNIP EWIGTLSALNVLLLKANQLDGKIPVQLCKSYFLSIIDLSQNMLSGPIPSCLGNLTLEL MGSKSSLGIVYSGFEVSKYIGMEVEFSFFSVLHRYPDSYMEEWVEFTTKSGSHKYTGV ILDYMFGIDLSCNNLTGQIPFELGNLSEIRSLNLSHNNLIGVIPQSFSNLKQIESLDL SYNSLSGRIPMQLIELNSLEVFSVAHNNLSGSTLERKAQFGTFDESSYEGNPFLCGPP LHNNCSETDSPSTVSTASDDEEVTGVPWASLIRGARFSIIELTSIGEARRITLEVGFE YTSRWPPREIGTQPTPRNGCVVRDAEADAKPCGISIGIWDNECLSGRRGGCHGLDGSS GS" mobile_element complement(21919291..21921891) /note="source:CACAO_M_E70112_F53_scaffold_10 1 2601" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21922455..21923430) /locus_tag="TCM_045038" /note="dbxref CacaoGD:Thecc1EG045038" mRNA complement(join(21922455..21922864,21923092..21923430)) /locus_tag="TCM_045038" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045043t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS complement(join(21922685..21922864,21923092..21923361)) /locus_tag="TCM_045038" /note="paralog of Thecc1EG045043t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19732.1" /translation="MASSQFKSGVPVYTQCQLQNHAGKKQYVTLDCQKDWHGSGDPPK TIQDQTSADFKHNADSTGSIGGVAFVLSNEIKWVVAWSNKEQQSNKVYTQILKGGDEV DWNQIKDNLDQSSNQSSDLDKYGYSSEAVIDKDNPAPSLQATLRPAA" mobile_element 21923885..21928392 /note="source:scaffold_2_CACTA_0248 4099 8514" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21929753..21930354 /note="source:scaffold_2_CACTA_0248 10172 10716" /mobile_element_type="transposon:TIR/CACTA" gene 21930253..21939434 /locus_tag="TCM_045039" /note="dbxref CacaoGD:Thecc1EG045039" mRNA join(21930253..21930397,21935169..21935229, 21937269..21937435,21937692..21937794,21937889..21937971, 21938067..21938222,21939344..21939434) /locus_tag="TCM_045039" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027065t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 21930332..21931085 /note="source:scaffold_2_CACTA_0248 10898 11657" /mobile_element_type="transposon:TIR/CACTA" CDS join(21935171..21935229,21937269..21937435, 21937692..21937794,21937889) /locus_tag="TCM_045039" /note="paralog of Thecc1EG027065t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19733.1" /translation="MNEVTYKSSKLKFQKKFVSRRVIGLSLNYKRSSPREEYSKVKDG WYLNAFLFLPFKDLKSLYLPGNHIAGCVENEGFEWLSRVSNLETLDLSWNSLKNSILL HMGNLSS" gene complement(21939436..21962893) /locus_tag="TCM_045040" /note="dbxref CacaoGD:Thecc1EG045040" mRNA complement(join(21939436..21941865,21941953..21943280, 21943437..21943543,21943616..21944634,21957644..21958160, 21958273..21958329,21962834..21962893)) /locus_tag="TCM_045040" /product="Copia-like retrotransposable element, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g26190.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026511t1" /inference="similar to AA sequence:frave:gene24361" /note="quality class is medium-expresste, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.10 coverage" mobile_element 21939809..21944545 /note="source:CACAO_M_E12133_F133_scaffold_3 1 4694" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(21940148..21941865,21941953..21943280, 21943437..21943543,21943616..21944086)) /locus_tag="TCM_045040" /note="dbxref frave:gene24361; paralog of Thecc1EG026511t1" /codon_start=1 /product="Copia-like retrotransposable element, putative" /protein_id="EOY19734.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LH44" /translation="MASTSYNAPAPPVFSGENYAIWSVKMEAYLRAFDLWEVVEVGGD PPEQRQNLTIEQMKQYSEEVAKRFKALSCIHSTVSDIIFTSIMTCKSAKKAWDKLNEE FQGSVRIRQIQALNLWREFEILRMKEEEGLKDYTDKVIKVVNQLKLLGEDVPKKKDLS SFTVVELVNALHASEQRRAIRVVDHSESALLARPNIKCRACNQLGHIKKVCKNKGQTS EQIAAVAEQANQKDKVLFVANCYPKVRKKETWLLNSACSRHMTCDKSLFVMLDNKHKS NVEIGNGEYLKVDGIGTVEVETASGMKQIKDVLFVSTINQNLLSVGQLVACGYALLFK DLACKVFEPSGEELLTVKMKSNCFPVNWKEFKHHAYTCSSSDTTSWHKRLGHLNFHSL KLMHDEHLVENIPAIGSFNYICDTCQYGKQSKKPFPKQAKWRATQKLQLVHTDIGGPM MTASLSGNKFYLLFIDEFSRYCWVYFLKHKAEAFNNFLKFKAFVENQTSLTIKMLRSN NGKEYTSLEFQRYLTQFRIQQQLTVPYNPQQNGVSKRKNRTLMEMARCLLFEKKLPRS FWTEAVNTANYLLNIAPTKALTKGTPHDVWYGTKPLVAHLKIFGCIAYAQVLEDRRGK LDEKSRLTIHLGKRWNWSKLEVESSENLSIFNDQLEVEHDENNEDVDDVAVRGTRSLA DIYDRCHVALMEPTSFSEVVQVDGWQKAMENEVNMIKKNNTWDLVPRPANQKVIGVRW VYRTKLNTDGSVNKLKARLVVKGYAQIQGIGYLETSAPVARLDTIRLLVALVAKEKWK LWHLDVKSAFLNGLLEEDIFIEQPKGFIEPGMENRICKLKKALYGLKQAPRAWYARVD NYLCNKGFHMSESKPTLYVCCSSAGKQVIVSIYVDDILVTSLNTELLLKFKKEMMEEF KMTNLGLITYFLGLEFVQAEKFIILHQQKYATELLKKFKMQNCKAISTPIAANVKFSL SNNEELADATLYRRLIGSLLYLSSSGPDIMFSTSLLSRFMHQPTVTHLSAAKRILRYI KGSINFGIKFGREQSHHLQGFLDSDWAGSLDDSKSTTGFVFSFGSGVFSWASKKQEVV AQSSAEAEYISTAAATNHSLWLRKILSCLGFSQNDPNVLWMDNQSAIAMSKNPVQHGR TKHIQVKFHMIRDAVKNKEIDVQYCSSQDQVVYIMTKGLPTNRFQTLRSLLGVFKNDL KVC" mobile_element 21947623..21947709 /note="source:INTACT433_F212_scaffold_1-int 3049 3140" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21949707..21949827 /note="source:CACAO_on_E33_A_scaffold_3 7572 7690" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21949828..21949980 /note="source:CACAO_M_E12044_F76_scaffold_2 1 149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21950116..21950260 /note="source:CACAO_on_E33_A_scaffold_3 7700 7843" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21950623..21951096) /note="source:CACAO_on_E33_A_scaffold_3 11314 11831" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21951170..21951180) /note="source:CACAO_M_E58877_F5_scaffold_9 20728 20738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21951181..21951391 /note="source:CACAO_M_E23991_F4_scaffold_4 6134 6344" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21951372..21951758 /note="source:CACAO_M_E69938_F9_scaffold_9 3534 3917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21951392..21951690) /note="source:CACAO_M_E58877_F5_scaffold_9 20427 20727" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21951636..21972171 /locus_tag="TCM_045041" /note="dbxref CacaoGD:Thecc1EG045041" mRNA join(21951636..21952150,21962778..21963380, 21963484..21963541,21963718..21963876,21964205..21964366, 21964463..21964576,21965770..21965856,21965998..21966075, 21966160..21966258,21966978..21967058,21967560..21967634, 21967739..21967894,21968006..21968080,21969275..21969301, 21969375..21969521,21969715..21972171) /locus_tag="TCM_045041" /product="Receptor like protein 15, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045037t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01150.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc900t20" mobile_element 21952486..21952806 /note="source:CACAO_M_E44210_F112_scaffold_5 11402 12913" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21954591..21956084 /note="source:CACAO_M_E11662_F12_scaffold_2 4968 6472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21956067..21956142 /note="source:scaffold_5_CACTA_0584 1926 2041" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21957441..21959399) /note="source:INTACT33_F7_scaffold_5-int 9287 11314" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(21963165..21963380,21963484..21963541, 21963718..21963876,21964205..21964366,21964463..21964576, 21965770..21965856,21965998..21966075,21966160..21966258, 21966978..21967058,21967560..21967634,21967739..21967894, 21968006..21968080,21969275..21969301,21969375..21969521, 21969715..21971939) /locus_tag="TCM_045041" /note="paralog of Thecc1EG045037t1" /codon_start=1 /product="Receptor like protein 15, putative" /protein_id="EOY19735.1" /db_xref="Phytozome:POPTR_0005s01150.1" /db_xref="TAIR:AT1G74170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H025" /translation="MMMEPKWLWMLLIVLLLEGWLCSDACWEHERIALLQLKPFFNRY DHLNSWLEAKGSDCCQWEMVECNSSTRRELKSLYLPGNHIAGCIENEGFAKLSSRLGN LEILDLSWNYLNDSILLSLSELSSLKYLNLADNVLTGTSHVNGSGFESFSRLSNLETL DLSWNSLKNSILLHMGNISSLKVLYLRGSNLGGTVRIHDLSSNLFRNNTFAFLRGPSS LKSLDMSHNQLQGSIDIEGFESFSRLSNLETLDLSWNSLKNSPLLHMELNNLTNLKNL DLSDNRIESLRPLYQGNETELRLTSLDVLDLSWNLLRNNTFAFLRGLSRRYWPLKQAW GSHSGPVFFGLISLKTLELNNLINLKKLDLRWNKIESLRSFQGSGRQLELTHLEELDL SENLFNNSIFASLRGLSNLKSLYISSNQLKGSIDMEDLSAFTNLEELDMSNNELNKFV GHKVNKSMAFSSELHMSSNVEEIFLDYSDLNSNIVQSIGVLNSLKTLSLSDCGLIGTL PDRGWCDLKNLEELYISRNALQGNLPSCLGNLTSLRVLDISDNQFTGNLSPLTNFTSL RVLFLSTNHFQVPASFISLANLTDLKILLSDGNKLVMDPVFQTSVPKFQLNMMTLSKC STDQELIKELPKFLYYQYDLRYVDLSYNKFSGMLPFWLLENNTKLEGLILADNFFTGP LLFPPFPHLEASSIDISNNKIQAQISVDICSAFPHLEKLILSANTFEDNIPPCLGGMS QLTILDLSNNQLSGGVPKELSMSSSLRVLRLSNNNLSGNVVPIILKSKFLLELYLDGN NFAGQRLDIDILTVGFPYFLRGIDLSNNSLSGELPRWIWNLSNLERLDLSNNHFEGSI PMELCNLHNLEFLDLSQNNLSGSIPSCFNPPSIKHVHLSKNRLSGPLTLALYNSSSLV TLDLRANKLTGNIPEWIGTLSALNVLLLKANQLDGKIPVQLCKSYFLSIIDLSQNMLS GPIPSCLGNFTLGLMYRKSSLDIGYFPFSELEVLKYIRMEVEISFFSVLHRYPDSYME EWVEFTTKSGSHKYAGDILDYMFGIDLSCNNLTGQIPIELGNFSEIRSLNFSHNNLIG VIPQSFSNLKQIESLDLSYNSLSGRIPMQLIELNSLEVFSVAHNNLSGSTLERKAQFG TFDESSYEGNPFLCGPPLHNNCSETDSPSTVSTASDDEEGSLLDTYVFCVSFLVSYVV VLLGIFAVLYINSCWRKAWFVFIEDCITYCRFSTVGNFLELQIFRRIA" mobile_element 21972560..21972649 /note="source:INTACT296_F13_scaffold_9-int 13134 13225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21972592..21972660 /note="source:scaffold_9_CACTA_0927 15058 15128" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21972605..21972672) /note="source:scaffold_6_CACTA_0712 1379 1445" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21975025..21975530) /note="source:scaffold_1_CACTA_0006 9274 9772" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21975524..21975684) /note="source:CACAO_Again_on_S_E35_scaffold_1 431 591" /mobile_element_type="transposon:TIR/hAT" mobile_element 21975548..21977416 /note="source:scaffold_9_CACTA_0938 1882 3225" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21976393..21977551 /note="source:CACAO_Again_on_E5_scaffold_1 4088 5267" /mobile_element_type="transposon:TIR/hAT" mobile_element 21977652..21978601 /note="source:scaffold_2_CACTA_0273 7666 8028" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21978016..21978989) /note="source:scaffold_3_CACTA_0393 1 932" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21979010..21979058 /note="source:CACAO_on_E732_scaffold_9 7590 7639" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21979046..21979197) /note="source:scaffold_10_CACTA_0128 3771 3921" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21979211..21979504) /note="source:scaffold_4_CACTA_0506 3288 3579" /mobile_element_type="transposon:TIR/CACTA" gene 21979748..21980715 /locus_tag="TCM_045043" /note="dbxref CacaoGD:Thecc1EG045043" mRNA join(21979748..21980015,21980306..21980715) /locus_tag="TCM_045043" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045038t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc15501t1" CDS join(21979809..21980015,21980306..21980485) /locus_tag="TCM_045043" /note="paralog of Thecc1EG045038t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19736.1" /translation="MASSQFKSGVPVYTQCQLQNHAGKKQYETMDSGNDWHGSGSPPK TIQDQESGEFKHNADSTGSIGGVAYVYTQILKGSDEVDWQQIKDNLDQSSHQSSDLGK LGYSSEVVIDKNNPPPSLKATLRPAA" gene 21987581..21988179 /locus_tag="TCM_045044" /note="dbxref CacaoGD:Thecc1EG045044" mRNA 21987581..21988179 /locus_tag="TCM_045044" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage" CDS 21987735..21987998 /locus_tag="TCM_045044" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19737.1" /translation="MIRVLRVARLEEKSGRAMVKCFGAFGVGGLLLLAALAASMVFLP LMLPPLPPPPLMLLFFPVGIMAALMFLAFSPSEAIGNVVLHAV" mobile_element complement(21988385..21988510) /note="source:scaffold_4_CACTA_0483 1010 1127" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21988656..21989011) /note="source:CACAO_on_SS_E42_scaffold_2 24155 24538" /mobile_element_type="transposon:TIR/Mutator" mobile_element 21988864..21989050 /note="source:CACAO_Again_on_S_E235_scaffold_7 116 304" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(21989030..21989114) /note="source:CACAO_hAT_E1892_scaffold_4 2 83" /mobile_element_type="transposon:TIR/hAT" mobile_element 21990913..21991169 /note="source:scaffold_7_CACTA_0795 2848 3127" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21990928..21991348) /note="source:CACAO_PIF_E119_scaffold_3 4228 4662" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(21991551..21995225) /locus_tag="TCM_045045" /note="dbxref CacaoGD:Thecc1EG045045" mRNA complement(join(21991551..21991637,21992121..21992268, 21994286..21994408,21994967..21995203)) /locus_tag="TCM_045045" /product="Thioredoxin z, P,TRX z isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009569" /inference="similar to AA sequence:Phytozome:POPTR_0001s06590.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8356t1_C2; inference alignment:Newbler:10:TSA:cgbaP2_g14222t00001" mRNA complement(join(21991962..21992268,21992457..21992537, 21994286..21994408,21994967..21995225)) /locus_tag="TCM_045045" /product="Thioredoxin z, P,TRX z isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009569" /inference="similar to AA sequence:Phytozome:POPTR_0001s06590.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14222t00001; inference alignment:Newbler:10:TSA:cgbaP2_g14222t00001" CDS complement(join(21992152..21992268,21994286..21994408, 21994967..21995167)) /locus_tag="TCM_045045" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Thioredoxin z, P,TRX z isoform 2" /protein_id="EOY19739.1" /db_xref="Phytozome:POPTR_0001s06590.1" /db_xref="TAIR:AT3G06730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLZ3" /translation="MALFQTHTLSHTIPSLPPLSYFSSKTHLQNSLFFSTTNVRPFSL STQPRKLLCKPTLGKYVREDYLVKKMSAQEVEELVRGERSVPIIIDFYATWCGPCILM AQELEMVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDILDNEM" CDS complement(join(21992152..21992268,21992457..21992537, 21994286..21994408,21994967..21995167)) /locus_tag="TCM_045045" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Thioredoxin z, P,TRX z isoform 1" /protein_id="EOY19738.1" /db_xref="Phytozome:POPTR_0001s06590.1" /db_xref="TAIR:AT3G06730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLZ3" /translation="MALFQTHTLSHTIPSLPPLSYFSSKTHLQNSLFFSTTNVRPFSL STQPRKLLCKPTLGKYVREDYLVKKMSAQEVEELVRGERSVPIIIDFYATWCGPCILM AQELEMLAVEYEKNAIIVKVDTDDEYEFAHDMQVRGLPTLFFISPDPNKEAIRTEGLI PIQMMRDILDNEM" gene 21995785..21996731 /locus_tag="TCM_045046" /note="dbxref CacaoGD:Thecc1EG045046" mRNA join(21995785..21996060,21996262..21996731) /locus_tag="TCM_045046" /product="Pathogenesis-related protein 10.5, putative" /inference="alignment:exonerate-protein:2:frave:gene05122" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021294t1" /inference="similar to AA sequence:Phytozome:GSVIVT01035071001" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc3440t1_G4" CDS join(21995892..21996060,21996262..21996455) /locus_tag="TCM_045046" /note="paralog of Thecc1EG021294t1" /codon_start=1 /product="Pathogenesis-related protein 10.5, putative" /protein_id="EOY19740.1" /db_xref="Phytozome:GSVIVT01035071001" /db_xref="UniProtKB/TrEMBL:UniRef50_D3HUL0" /translation="MKWRLLPQFPPAKMFKAFVLDADNLIPKVVPQAIKSSELLEGDG GPGSIKKITFGEDQLRVYDTGFVAGPDGGSVCKSTSKYYTIGDNEIKEEQIKTGKERA FGMYKAVEAYLLANPAYN" mobile_element complement(21997748..21998330) /note="source:CACAO_Mariner_E637_scaffold_262 2939 3508" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(21998325..21998376) /note="source:CACAO_Mariner_E637_scaffold_262 2689 2740" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 21999769..22000698 /locus_tag="TCM_045047" /note="dbxref CacaoGD:Thecc1EG045047" mRNA 21999769..22000698 /locus_tag="TCM_045047" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400053549.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022315t1" /inference="similar to AA sequence:Phytozome:Glyma09g10240.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc8959t1" CDS 22000025..22000540 /locus_tag="TCM_045047" /note="paralog of Thecc1EG022315t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19741.1" /db_xref="Phytozome:Glyma09g10240.1" /translation="MSNSDLEICHLQYADDTAFTLQADLDILLNTRRVIWCFHIIIGL HINFRKGFLYGVGIGQSTLADWATIINCKTDSLPSSYLGIPLGASQSSLHAWQPVIDK LEARLSCWKARKLSMGGRITILNSVLSSLPIYFTSLFHIPARVRDKLERLQRRFLWSG SSPSRKIHLAN" mobile_element complement(22003340..22003407) /note="source:CACAO_M_E47_F305_scaffold_1 1276 1341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22003408..22003437) /note="source:CACAO_M_E69306_F123_scaffold_9 4910 5010" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22004018..22004153 /note="source:scaffold_5_CACTA_0580 5413 5552" /mobile_element_type="transposon:TIR/CACTA" gene complement(22005078..22007092) /locus_tag="TCM_045048" /note="dbxref CacaoGD:Thecc1EG045048" mRNA complement(join(22005078..22005885,22006423..22007092)) /locus_tag="TCM_045048" /product="Sequence-specific DNA binding transcription factors" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06580.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06580.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06435t00001" CDS complement(join(22005493..22005885,22006423..22007088)) /locus_tag="TCM_045048" /codon_start=1 /product="Sequence-specific DNA binding transcription factors" /protein_id="EOY19742.1" /db_xref="Phytozome:POPTR_0001s06580.1" /db_xref="TAIR:AT3G54390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWZ5" /translation="MDKETNQENPSLLSNNNANSITKEDCSPKKHPGSTAVIGGGSGG GGGGSNDRLKRDEWSEGAVSSLLEAYENKWVLRNRAKLKGHDWEDVARYVSARANCTK SPKTQTQCKNKIESMKKRYRSESATADGSSWPLYPRLDLLLRGSAPPPPQPPLQLQPP SAVPQAPAPLSTNPPLTLSEPSMVVVLQHQQPPPLPPPSIPPQVPGTAQNSHGSNGVD RIPKEDGAGTKLSDHLSDKVAMETDSSTPALYSDKEKLRSKKLKMKMEKKKRRKKEEW EIAESIRWLAEVVLKSEQARMETMREIEKMRVEAEAKRGEMDLKRTEILANTQLEIAR LFAGSSKGVDSSLRIGRS" mobile_element complement(22009896..22009991) /note="source:scaffold_9_CACTA_0936 535 633" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22009978..22010076 /note="source:scaffold_2_CACTA_0245 1060 1156" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22014068..22014306 /note="source:scaffold_7_CACTA_0795 2860 3280" /mobile_element_type="transposon:TIR/CACTA" gene complement(22019241..22021537) /locus_tag="TCM_045049" /note="dbxref CacaoGD:Thecc1EG045049" mRNA complement(22019241..22021537) /locus_tag="TCM_045049" /product="ARM repeat superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30131.m007175" /inference="similar to AA sequence:ricco:30131.m007175" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11770t00001" CDS complement(22020211..22021167) /locus_tag="TCM_045049" /note="dbxref ricco:30131.m007175" /codon_start=1 /product="ARM repeat superfamily protein" /protein_id="EOY19743.1" /db_xref="TAIR:AT1G08315.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DKK4" /translation="MEVKRRTARTLVAKLSSVSERTRTEALSELRLISKHDPESRPLI AEAGAVPYLSETLYGSSPTLQESAAATLLNLSITSRSSLMSTRGLLDALSHVLSNSPS PAAVQSTAATLHSLLIADESYRPIIGSKRDILYSLLSIITAANAPPRSIKDALKALFG IALYPLNRASLVDLGAVPALVSLIVRDARTGIVEDATAVLAQIAGCEESEEAMSKAGG VRVLGDLLDEGTGASARIRENAVAALLNLARCGSEKGRKDVREMGTKIMEGIAEVAEN GSAKGKSKAVDLLKFVVDGNGNGNEVRDSRFNNINDLMNHSI" gene 22023069..22028205 /locus_tag="TCM_045050" /note="dbxref CacaoGD:Thecc1EG045050" mRNA 22023069..22028205 /locus_tag="TCM_045050" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032210001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032200t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s20690.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5858t2" CDS 22023077..22027399 /locus_tag="TCM_045050" /note="paralog of Thecc1EG032200t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY19744.1" /db_xref="Phytozome:POPTR_0004s20690.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVE6" /translation="MKKSQQTEEEKVYAPSFHHSHLDHLYSLLFQKGEKMSAVGEAAL SAFFGVLFSKFDSPELLKFAREKQVHGEIKKWEKMLQSIRAVLDDAEEKQMRNGPVKI WLAELQDLAYDLDDLLDEFATEVSRQRLIQEHRTGAGKVHKLVPALCFSPGAVIFNSK MLSKIKEITARLQELVTQKLNLELRETVGGRAKGVKERLPTTSLVNEVHVYGRENDKK AIFELLLRNDGSDDGVSVIPIIGMGGIGKTTLTQLVYNDNNINVYFDLKAWVCVSEDF DVVKVTKTILQSITSEPCDVNDLNLLQVKLKEKLFKKKFLLVLDDVWNENYNDWTILR SPFEVGARESKIIVTTRSHLVSSVMGTIPGYSLQELSNDDCLSVFTQHALGARDFSGH PKLKEFGEEIVRKCNGLPLAAKTIGGILRTSMDPDAWKEVLKSKIWDMPVENSGTIPA LWLSYYHLPPHLKQCFAYCAILPKGYEFGEKDIVLLWMAEGFLQQAADTTKIEDLGGK YFRDLVSRSLFQISSRDRSQFVMHDLINDLAQSVAGEICCRVEGDKKLKFSQRVRHSS YVGELFDGVKKFESFHEMKHLRTFLPLRLASYGPRPYLTTIVLTELLPKLRYLRVLSL RRYYITKLPDSIGHLRHVRYLNFSHTRIKCLPDSISTLSNLETLILCWCINLEKLPSG MGMLINLRHLDTTGAASLKGMPVGIGGLTYLRTLSNFVVSHGNGYQIREMKNLSNLKG RLSISGLENVVEVRDALEAKLHEKSGLNWLELKWSMEFANSLRSESVERDILNWLQPN EELKELAIKYYGGTIFPAWVGDPSFKYLLSLNLEYCKYCRLLPSLGKLPLLRNLCIRG MSSIKSVGIELFGENCLNGFMSLETLCFEDMPAWKEWNPCEVDEQIEKFPFLRELSIV ECPKILGRLPKHLPSLEKLMVRECKQLEVSISSLPKLHELEIDGCKEVVLKSSADLRS LNIVSISRVSKFTGLMPMLTTVENLMINGCNELTSLWQNEVGLLGHWRSLHSLEILSC PRLISLEAEEEGELMQFRPFCNIKSLIIGYCESLEKLPNAFHNLTSLRELQIENCSKL ISFSETRLPFTLKKLVISNHNNLQYLLDGEIINTQDSLLEHLEIASCPSLLSLSSRCE LPINLQHLKISDCSILASLSSSGKLPTGLKHLTVRNCPELESIAQEFHNNTSLEFIRI SWCKSIAYFPRLDKLNYLQAIVTEYCPSLISFGTGGLPTINLKVLRIYKCEELRGLPN YIHNLTSLQELEISNCPHIISFPEEGLPTSLITLRVSNFKLCRPLFEWGLHRLTSLKV LSIKGGCPDVLSFPQEEMGMMLPTTLTSLTIEDFPNLKSLSSKGFQILNSLEFLWIAI CPKLTSLPRTNLLLSLLQLHIDDCPRLKQRCRKDKGQEWSKIAHVPRVEIDGRLIHDL EEQS" gene 22031752..22038925 /locus_tag="TCM_045051" /note="dbxref CacaoGD:Thecc1EG045051" mRNA join(22031752..22034821,22035313..22036480, 22036781..22036869,22036998..22037077,22037838..22038168, 22038739..22038925) /locus_tag="TCM_045051" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032210001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045081t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s20610.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9575t46" CDS join(22032214..22034821,22035313..22036430) /locus_tag="TCM_045051" /note="paralog of Thecc1EG045081t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY19745.1" /db_xref="Phytozome:POPTR_0004s20610.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVE6" /translation="MAFFADAALSAFFDSLFAKFSSSDFNFVTEKLVRKEIMNWETIL RTIHAVLADAEEKKMKNQAVKIWLADLQDLAYDVDDILDEFATEALGRRLMKEHQAST SKAQRFVPTCCTSLHPSSIMFNYKMMSKIKEITGRLQDLATKKINLQLENYVGRPMII PKSKPSTSLVNEATVRGRDKDKKAIIDLLLRKDGNDAGVSVIPITGMGGIGKTTLAQL VYNDSSIGDYFNLKAWVCVSDEFDVIKITKTILESVTFQSCDIHDLNLLQVKLKEKLS GKKFLLVLDDVWNENYDDWTKLRSPFDAGITGSKIIVTTRSSNVSSIMRSVADYLLQS LSEDDSLSLLSHHALARGDFTGHPDLKEIGLEIVKKCGGLPLAIKTIGGLLRTRENHD AWKYILMSDIWSIPEEKSDIIPALWLSYYYLPPQLKQCFAYCSFVPKDYEFKEEEIVL LWMAEGFLNGANTKRATKDLGSKYFEELVSRSFFQASRKNQSQFVMHDLINDLAQLVA GEIYFKRERYDDMKGPISRTRHSSYIIGKYDRIEKFEAFFEAKFLRTYLPFDMMMMRR YGRCYLSSNVLDDLLPRLKCLRVLSLKRYYIKKIPSSIGNLKHLRYLDFSYTEIKSLP DSICTLYNLETLLLRFCDGIEKLPMKIGILENLCHLDITGANSIKEMPSGIGKLTNLQ VLSTFIVGQGDGLNIREMQNLSNLKGQLCISKLHNVDEAQYAWEAKLSGKSSLNNLEL SWSRNFNENLRNKEVEGEVLTLLQPHEELKALAIKYYAGLTFPIWLEDGSLKNLQFLN LEDCQNCKLLPAIEKLPLLKHLCIKGMRSVISVGIEFHGVNWPNLFPSLETLHFEDML EWKEWKVCEINKQGAADEEKEELLQLELPRNIEYVILIGCQGLERLSKSLQNLTCLAR LNIVRCSKLVSLSVDSLPLTLRTLDISDCENLQCLLDDEENINFSSTSLLESLDIGCC EALKSLSSSGKLPVRCKKLFIYECPVLRFLAQNIGDNACLESISLQNCINIKYLPQGL DKLNHLQEIDFDCCPSLVGFPESGLPIANLKTLRFVECEKLEALPILHTIQQLTILGC PRVRYSIEENGFPTNLTELDIDEPNISKALMIWGLHRFTSLTKLDIDGSNCIEVVSFP QEEIGMKLPPSLTHLSIGNFKNMKKVSSNGLQNLTSLQSLKIYHCPKLKSLPRKEMLR SLSQLLIYWCPVLKERCKRGKGKQWSNIAHIPYIEID" gene 22038027..22040380 /locus_tag="TCM_045052" /note="dbxref CacaoGD:Thecc1EG045052" mRNA join(22038027..22038168,22038739..22038830, 22039017..22039226,22039345..22040380) /locus_tag="TCM_045052" /product="Ankyrin repeat protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046873t1" /inference="similar to AA sequence:Phytozome:Glyma04g06200.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8795t4" CDS 22039346..22039984 /locus_tag="TCM_045052" /note="paralog of Thecc1EG046873t1" /codon_start=1 /product="Ankyrin repeat protein" /protein_id="EOY19746.1" /db_xref="Phytozome:Glyma04g06200.1" /db_xref="TAIR:AT4G10720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6TFU7" /translation="MDDRLIKASQVGDIDALYELIWEDDNVLKRIDEKMFVDSPLHIA ASFGQTRFAMEMMNFIPSFSKNLNKSGFSPMHLALINGHFELVSLFLHADAGLVRVKG RGGLTPLHYAIKNGNLNFVAKFLLACPESIEDVTVRGETVLYIAIKSDMLEALEVLVR WFQRICHKDALDWLEFIPNWKDEEGNTALDIAVSNSQIQACLILLPFFFLIS" gene 22040429..22046000 /locus_tag="TCM_045053" /note="dbxref CacaoGD:Thecc1EG045053" mRNA join(22040429..22041339,22041759..22042086, 22042837..22043030,22044050..22044475,22045110..22045233, 22045404..22046000) /locus_tag="TCM_045053" /product="NB-ARC domain-containing disease resistance-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045085t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage" CDS join(22040703..22041339,22041759..22042086, 22042837..22043030,22044050..22044475,22045110..22045233, 22045404..22045470) /locus_tag="TCM_045053" /note="paralog of Thecc1EG045085t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance-like protein" /protein_id="EOY19747.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVE6" /translation="MSFVGEACLSTFFEALFAKLGSFESLHFAIKKQVYEELRKWEKI LKNIQAVLDDAEEKQMKDRHVKIWLAELQDLAYDVDDILDEFATEALGTKLMQERQAD RSKVWKIIHTFITIFNPYAFLFNYKMMSKIKAITVRLQDLVTQKSDLHLRKNDVGRPK RMIERPLTTSLVNEALVYGREDDKKAIIDLLLMNDSSDGKVTMIPIVGIGGIGEKGFD WHMDLKETRELITRKCNGLPLAAKTIGGLLCSRVDPDAWKDVLENEIWNSSEEKCGVI PTLRLSYYHLPPHLKQCFSYCSILPKAYEFGDEEIVLLWMAESLLQLQNLVNSQDALD ARLFDKSGLDDLEMKWSANLKDDLRKKEAEKKVLSLLQPHKKLKKLTIKYYGGKLPIM LQHLKIWSCSKLAYLSSSGTLSVGLKYLRIDLCQMLESIAHSVHNNTCLEFIVIGRCE KIQYLSNGLDQLNGLQQIQIECSRNLVSISKLPFTNLRVLRLSWCRKFQALPDGMHIL TSLRELEISNCPCLLSFPEEAAPIQTMSPAAAVVKTSLITLLLLEESPSFAIMQIGKI HTLSIAYVPFVKVDHKFAYDLEEES" mobile_element 22045637..22048667 /note="source:INTACT194_F169_scaffold_1-int 1 3018" /mobile_element_type="retrotransposon:LTR/Copia" gene 22054507..22059408 /locus_tag="TCM_045056" /note="dbxref CacaoGD:Thecc1EG045056" mRNA join(22054507..22059080,22059211..22059408) /locus_tag="TCM_045056" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:frave:gene34119.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045093t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s20690.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9575t46" CDS 22054963..22059048 /locus_tag="TCM_045056" /note="paralog of Thecc1EG045093t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY19748.1" /db_xref="Phytozome:POPTR_0004s20690.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVE6" /translation="MAFIADAALSAFFDSLFSKFSSPDFNFVTEKQVRKEIMTWETKL RDIHAVLADAEEKKMKSQTVKNWLADLQDLAYDVDDILDEFATQALGRKLMKAHQAST SKAQKFLTSLHPSSIMFNYKMMSKIKEITGRLEDLATRKIKLQLVNAVGRPMTLPRSK PSTSLVNEATVRGRDKEKEAILDLLLRDGGIDAGVFVIPIVGMGGIGKTTLAQLVYND SRITQYFDLKAWVCVSNEFDVIKVTKIILQSVTSESCDINDLNLLQVKLKEKLSSKKF LLVLDDVWNENYNDWTKLRSPFDAGIPGSKIIVTTRSFNVSSIMRSVADYSLQSLSND DSLFMLAHHALERGDFAKHPDLEEIGLEIVKKCGGLPLAIKTIGGLLRTKVNHDAWKD ILESDIWSLPEEKSDITPALWLSYYYLPSQLKQCFAYCSLVPKDYAFKEEEIVLLWMA EGFLNGANTKSKIQDLGSTYFEELVSRSFFQASNKNKSQFVMHDLINDLAQFVAGEIY FKKERHDDMKGPISRIRYSSYIIGSYDGIKKFETFFEAKSLRTYLPFEMMQQWRCYLS NNVLNDLLPALNCLRVLSLKRYYITEIPSSIGNLKHLRYLDFSYTKIKSLPDSIYTLY NLETLLLRFCENFEKLPLKIGILDNLCHLDMTSANSIKEMPSGIGKLTNLQVLSNFIV GQGDGLNIKEIQNLVNLKGRLCISELHNVDEAQHAWEAKLSSKCDLDNLELKWSADFN ENLRKKEVEKEVLNSLQPHKDIKELAIKYYGGIEFPGWVEDDSFKNLQVLSLEYCENC TFLPTVGKLPVLKHLYVKGMKSVISVGNEFHGVNGPKVFPSLETLHFKDMPEWKEWKL YEVDEQGKKFCCLRKLFIENCPKLEKTLPDQLYSLEKLVIRKCQELVVSVSNLPMLCE LDIDGCKEVVLRSYDDLWLVKKISLSNISKFECVTKEMKMVEWMKVEDLQINNCKELT SLCQTKWGWLAPLRSLRTIKFENCPQVVCIGGGVKEEEKEELLQLEIPCNIEYVRLQN CQRLERLSKTFPNLTCLTKLRIVKCLKLVSLSTDNLPPTLRTLEIWDCDNLECLLDDK ENINFSSTSLLQSLNISNCEALKSLSWSGKLPVGLKSLLILMCPEIESLAQKIGDNAC LESISLWDCRNIKYLPQGLDKLSRLQEINLYCPNLVRLPEALPNLHHLQHLIIGECPR VQNSIGGRGFRTNLTSLSLFDPNISKAIMQWGLHRLTSLTKLIIDGSNCTDVVSFPQE EIGMKLPLSLIDLSIRNFKNIRKLSSNGFQNLTSLQYLWIGNCPKLKSIPRKEMLPSL LQLHIWECPVLKKRCTRDEGKQWSNIAHIPEVRIDGRFIYE" mobile_element complement(22064901..22064947) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3215 3261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22065345..22065421) /note="source:CACAO_M_S_E98772_F106_scaffold_8 1761 1843" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22067224..22067371) /note="source:CACAO_M_E24109_F106_scaffold_4 1032 1176" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22067309..22067383 /note="source:CACAO_M_E84368_F4_scaffold_10 5105 5178" /mobile_element_type="retrotransposon:LTR/Copia" gene 22067407..22071081 /locus_tag="TCM_045057" /note="dbxref CacaoGD:Thecc1EG045057" mRNA join(22067407..22067688,22067779..22067859, 22067954..22068274,22068685..22069058,22069183..22069225, 22069871..22070132,22070276..22070402,22070544..22071081) /locus_tag="TCM_045057" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36430.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16690t00001" CDS join(22067450..22067688,22067779..22067859, 22067954..22068274,22068685..22069058,22069183..22069225, 22069871..22070132,22070276..22070402,22070544..22070698) /locus_tag="TCM_045057" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19749.1" /translation="MVAQKWSSTLVNGTSGFCLKVKLNRLKTHLKHWNKVSFGNIDDT INELENKVEEFDIICNLKDLTDNECLAQKQVVQQLCARPRSVLVITTSLESQLMVHGS LIRQSSHDAQNLEALISMEELKFAIWSCDGSKAPGPDGFNLNFFKHYWSFIKSELFDF ISDFMTRGKLDKGINSSFIALIPKTPNPTALTEYWPISLINSLYKILAKLLANRLFRG ISITSFGLSLSHLQFVNDTIIFMHADTQGALNLKWMLHYFELASGLHINFQKLSAFLI GISNSLGNELSALLHCKVGSLPLSYLGIPLGANPKRASTWDPIVNRFKKKLALWQRKY LSLGEQLTNERSQKLNGPRSNASYGWRSLTLSLRKSSSLHVESVSPPTSFVVCGVANL RNAVRTSFSPAHSVGEFGDMFLNGGESLGVLRVLYPLLCKRGMVALLGIRASKGVDAI EDMGWWIDPHLSSRRKAPHHHRVGTSWSPPPTELMAILKALKLFTATPYTSSPLIIES DSCVVLSWVYSVEKRPGTNEVSITS" mobile_element 22071039..22073516 /note="source:CACAO_M_E56230_F134_scaffold_8 447 2942" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22079494..22080838 /locus_tag="TCM_045058" /note="dbxref CacaoGD:Thecc1EG045058" mRNA 22079494..22080838 /locus_tag="TCM_045058" /product="NB-ARC domain-containing disease resistance protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045051t1" /inference="similar to AA sequence:ricco:30063.m001411" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS 22079674..22080630 /locus_tag="TCM_045058" /note="dbxref ricco:30063.m001411; paralog of Thecc1EG045051t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein" /protein_id="EOY19750.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVE6" /translation="MKWEMILRTIHTVLGDAEEKKMKNQAVKVWLADLQDLAYDVDDI LDEFATEALGRKLMKEHQASTSKAEKFLTSLHPSSIMFNNKMMYKIKEITGRLQDLAT PKSNLQLSEIDVGRPKPAERLPSTSLVNEATVRGRDNDKEAILDLLLRDGGIHAGVSV IRIVGMGGIGKTTLAQLVYNESSIRDHFDFKAWVCISDEFDVIKITKTILESITSQSS NTNDLNLLQVRLKEQLSSKKFLLVLDDVWNENYDDWTKLRSPFDAGIPGSKIIITTCS FNVSFIMGTVTDYSLQIVSNDDSLYTLAHHALERGDFTGHPD" mobile_element complement(22081320..22083390) /note="source:CACAO_M_E70109_F106_scaffold_10 1 2071" /mobile_element_type="retrotransposon:LTR/Copia" gene 22093230..22096149 /locus_tag="TCM_045060" /note="dbxref CacaoGD:Thecc1EG045060" mRNA join(22093230..22093706,22093864..22094114, 22094220..22094472,22095450..22096149) /locus_tag="TCM_045060" /product="NB-ARC domain-containing disease resistance-like protein" /inference="similar to AA sequence:Phytozome:GSVIVT01013310001" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(22093574..22093706,22093864..22094114, 22094220..22094472,22095450..22096078) /locus_tag="TCM_045060" /codon_start=1 /product="NB-ARC domain-containing disease resistance-like protein" /protein_id="EOY19751.1" /db_xref="Phytozome:GSVIVT01013310001" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I6R0" /translation="MKDRHVKIWLAELQDLAYDMDDILDEFGTEALGSKLVQECRANR KNDVGRPKRKIERPPTTSLVNEALVYGREEDKKAIIDLLLMNDYSDDKVIVIPIVGIG GIGKTTLAQLVYNDDSIKDHFDIKVWVELKEKLYENNFLLVLDDIWNGRYHDWNILQF PLEVGGLRSKIIVTTRDQNVSSIMRTVPNHSLKELPNDDCLFILTQHSLGEKGQGVGY QIRELNNLSNLKGQLSLSRLENLVNAQDALEARLFDKSNLDDLEMKWSADLKDDLRKE GVEKEVLSLLQPHKKLKKLIIKYYGGLAFPTWVGDPSFKNLIFLNFEGCQKCTSLPSI GKLPFLKVVCIKGMSFINRVDAEFYGEKCSNAFPSLEILHFEDMPELKEWNFYQVDGQ TRFFKCLRDLSVKKCPKLLRSQPSCLPCL" mobile_element complement(22096101..22098823) /note="source:CACAO_on_SS_E42_scaffold_2 19406 22119" /mobile_element_type="transposon:TIR/Mutator" gene 22096197..22108460 /locus_tag="TCM_045061" /note="dbxref CacaoGD:Thecc1EG045061" mRNA join(22096197..22096322,22101959..22102059, 22106323..22107343,22108367..22108460) /locus_tag="TCM_045061" /product="CC-NBS-LRR protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046357t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s20690.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.26 coverage" gene 22098710..22100976 /locus_tag="TCM_045062" /note="dbxref CacaoGD:Thecc1EG045062" mRNA join(22098710..22098779,22099025..22099078, 22099370..22099853,22099944..22100976) /locus_tag="TCM_045062" /product="CC-NBS-LRR-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045053t1" /note="quality class is medium-utrpoor, express is none, homology is paralog strong, intron is none, protein is utrpoor_complete" CDS join(22099061..22099078,22099370..22099853, 22099944..22099945) /locus_tag="TCM_045062" /note="paralog of Thecc1EG045053t1" /codon_start=1 /product="CC-NBS-LRR-like protein" /protein_id="EOY19753.1" /translation="MVSSVEEDSIKISSTSLLSHLTIRKCPSLISLSSRGELPVRLQR LKIWSCPKLTYLSSSGTLPVGLTYLQVDLCQMLEYVAYSVHNNTCLKFIFVGRCEKIQ YLPNGLDKLSHLQQIQIECSQNLVSISKLPFTSLHVLCLSWCRKLQALPNGMHILTSL RELEISN" mobile_element 22105525..22105778 /note="source:INTACT383F_F354_scaffold_3-int 897 1129" /mobile_element_type="retrotransposon:LTR/Unclassified" CDS 22106409..22107311 /locus_tag="TCM_045061" /note="paralog of Thecc1EG046357t1" /codon_start=1 /product="CC-NBS-LRR protein" /protein_id="EOY19752.1" /db_xref="Phytozome:POPTR_0004s20690.1" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2Y0Z9" /translation="MAKVNFIYGDSYLLSIFIWSFENLECLLDDKENINFSSTSLLQS LYIVDCEALKSLSWSGKLPVQLKTLDIDKCPELECLAREIGDNTCLETIILRKCRNIK YLPQRLDKLSRLQKISLECPNLVRLPEALPNLHHLQYLLIRVQNSIGERGFPTNLTSL QIGDPDISKAVMEWGLHRLTSLTYLFIDGSNCTDATSFPQQEIGMKLPPSLADLSIKN FKNVRKLSSNGFQNLTSLQYLSISHCPKLKSIPRKEMLPSLSLLWIRDCPVLKKRCKR DEGKQWSNIAHIPDVTIDGRFIYE" gene 22106736..22283412 /locus_tag="TCM_045068" /note="dbxref CacaoGD:Thecc1EG045068" mRNA join(22106736..22106837,22161028..22161534, 22162567..22162695,22283384..22283412) /locus_tag="TCM_045068" /product="CC-NBS-LRR protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046357t1" /inference="similar to AA sequence:frave:gene35140" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7975t42; alternateUTRof:Thecc1EG045068t1; inference alignment:Newbler:10:TSA:cgbaL_g00931t00002_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc209t39" gene 22111068..22113644 /locus_tag="TCM_045065" /note="dbxref CacaoGD:Thecc1EG045065" mRNA join(22111068..22111105,22111414..22111671, 22112085..22112155,22112686..22112891,22113497..22113644) /locus_tag="TCM_045065" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg5945t1" CDS 22111415..22111564 /locus_tag="TCM_045065" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19756.1" /translation="MNKTNDFASNCNALRINDGKVSKQHVSVSCRKKTKILGSTMILS CMCGH" mobile_element complement(22117116..22117440) /note="source:CACAO_on_E86_scaffold_1 590 868" /mobile_element_type="transposon:TIR/hAT" mobile_element 22117191..22117401 /note="source:CACAO_hAT_E1792_scaffold_4 56 282" /mobile_element_type="transposon:TIR/hAT" mobile_element 22117808..22117875 /note="source:CACAO_on_E21_scaffold_4 261 325" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22117876..22117984) /note="source:scaffold_10_CACTA_0140 2916 3030" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22118081..22118164 /note="source:CACAO_hAT_E1792_scaffold_4 905 990" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22123152..22123558) /note="source:INTACT654_F287_scaffold_8-int 1502 1902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22123811..22124192 /note="source:INTACT58_F125_scaffold_5-int 2516 2896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22125462..22125552) /note="source:scaffold_1_CACTA_0016 6346 6434" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22126823..22126874 /note="source:scaffold_6_CACTA_0699 12131 12186" /mobile_element_type="transposon:TIR/CACTA" mRNA join(22128722..22128974,22160997..22161534, 22162567..22162695,22162974..22163049,22163653..22163727, 22164354..22164453) /locus_tag="TCM_045068" /product="CC-NBS-LRR protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene35140" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046357t1" /inference="similar to AA sequence:frave:gene35140" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00931t00002_C2; inference alignment:Newbler:10:TSA:cgbaL_g00931t00002_C2" mobile_element complement(22132159..22132213) /note="source:scaffold_6_CACTA_0699 9568 9622" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22135732..22136037) /note="source:CACAO_on_E6_scaffold_1 2919 3197" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22136557..22136744) /note="source:CACAO_hAT_E2547_scaffold_5 5 197" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22139509..22140092) /note="source:INTACT135F_F90_scaffold_2-int 13385 14002" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22140093..22140774) /note="source:scaffold_2_CACTA_0244 13466 14689" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22142964..22143913 /note="source:INTACT1330F_F382_scaffold_8-int 1 941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22144014..22146338) /note="source:INTACT117_F146_scaffold_2-int 6896 9223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22146439..22146832) /note="source:INTACT117_F146_scaffold_2-int 6310 6703" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22147293..22364809 /locus_tag="TCM_045071" /note="dbxref CacaoGD:Thecc1EG045071" mRNA join(22147293..22147945,22364599..22364809) /locus_tag="TCM_045071" /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400038200.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029731t1" /inference="similar to AA sequence:Phytozome:Glyma07g28640.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc1270t1_G2" CDS join(22147630..22147945,22364599..22364600) /locus_tag="TCM_045071" /note="paralog of Thecc1EG029731t1" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative" /protein_id="EOY19757.1" /db_xref="Phytozome:Glyma07g28640.1" /translation="MAVLHIEKVGPNELNPWKVYFDGASNALGHGIGAVLISPNGKYY PATARLNFNCTNNMAEYEALVLGLQAAIDMKADAIDVYGDSALVICQMKGEWETRDPK LVP" mobile_element 22148775..22148964 /note="source:INTACT1232F_F375_scaffold_6-int 7523 7712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22149065..22149624 /note="source:INTACT1232F_F375_scaffold_6-int 7765 8320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22150849..22151119 /note="source:CACAO_on_S_E46_scaffold_2 17421 17687" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22151220..22153016 /note="source:CACAO_M_E3969_F127_scaffold_1 380 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22153202..22153585) /note="source:INTACT654_F287_scaffold_8-int 1496 1902" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(22161113..22161534,22162567..22162582) /locus_tag="TCM_045068" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene35140; paralog of Thecc1EG046357t1" /codon_start=1 /product="CC-NBS-LRR protein isoform 1" /protein_id="EOY19754.1" /translation="MEWGLHRLTSLTYLLIDGSNCTDATSFPQEEIGMKLPPSLINLY IGNFKNLRKLSSNGFQNLTSLQSLEIYHCPKLKSIPQKEMLPSLLQLDIGDCPVLKKR CKRDKGKQWSNIAHIPFVTIDGRFIYEWSRGRIKACRLRFGRH" CDS join(22161113..22161534,22162567..22162582) /locus_tag="TCM_045068" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene35140; paralog of Thecc1EG046357t1" /codon_start=1 /product="CC-NBS-LRR protein isoform 1" /protein_id="EOY19755.1" /translation="MEWGLHRLTSLTYLLIDGSNCTDATSFPQEEIGMKLPPSLINLY IGNFKNLRKLSSNGFQNLTSLQSLEIYHCPKLKSIPQKEMLPSLLQLDIGDCPVLKKR CKRDKGKQWSNIAHIPFVTIDGRFIYEWSRGRIKACRLRFGRH" gene 22165627..22251543 /locus_tag="TCM_045077" /note="dbxref CacaoGD:Thecc1EG045077" mRNA join(22165627..22165712,22165817..22165941, 22166030..22166106,22186380..22186886,22186997..22188637, 22188730..22189433,22190966..22191222,22250304..22250921, 22251026..22251179,22251238..22251543) /locus_tag="TCM_045077" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045093t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s20690.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS join(22165911..22165941,22166030..22166106, 22186380..22186886,22186997..22188637,22188730..22189401) /locus_tag="TCM_045077" /note="paralog of Thecc1EG045093t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY19758.1" /db_xref="Phytozome:POPTR_0004s20690.1" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVE6" /translation="MVVVPCLLMPWMNKTHDFVSHSNALKIKVGKVSRQHILIMGFIG EVALSAFFDSLFAKFFSSKFNFVTEKRVRKEIMNWETTLKTIRALLPDAEEKKMKNLA VKIWLADLQDLAYDVDDILDEFATEALRRKYMKAHQASTSKAQKFLTSLHPSSIMFNY KMMSEIKEIMRRLEDLAARKSNLQLREIDVGRPMPIPKSRSSTSLYSRCYLSNNVLNH LLSALKCVRVLSLKRYYITEIPSSIGNLKHLYYPDFSYTKIKSLPDSIYSLYNLETLL LRFCENFEKLSLKLGILDNLCHLDITGGNSIEEMPSGIGKLKNLQVLSNFIVGQGDGL NIREMGNLSNLKDQLCIFELHNVDEAQYAWEAKLSIKPDLENLELKWSRGFNENLRRK EVEKEVLNSLQPHKDIKELAVKYYGGIEFPDWVEDDSFKNMQVLRLEYCQNCILLPAV GKLPLLKHLYIKGMGSVINVGNEFHGVNGSNAFPSLETLHFEDMLEWKEWKLCEFDEQ GKKFCCLQELFVKNCPKLVTTLLENLNSLEKLVILNCQELVVSVLNLPMLCELEIKGC KEVVLGSYDDLQSLKKILLSNILKFACVTKMKMLQSMKVENLQINNCEELICLWQTKC WWLVPLRSLRTLMFNNCSQVVCMGASKEEEKKELLELKIPRNIEYVKLQDCEGLERFS KTFHNLTCLTKLVIVKCPKLVSLSTDNLLPTLRTLEIDNCENMESLIDDKENINFSST YFLQSLYIRSCEQSVGNNTCLESITLWDSKNIKYLPQGLDKLNRLQEIQFLDCPNLVR FPKPLPNLHHLQRLIIWECPKMQYSIGERGFPANLTFLSIYEPNSNKEVMEGLHRLTY LTTLWIDGTNCMDAMSFPQEEIRMKLPPSLTDLFIRGFKNLRKLSSNGFQNITSLQSL SINNCPKLKSIPREEMLPSLLQLCIRNCPVLKKRCKKDKGKQWSNITHIPYVTIDDRF IHE" mobile_element complement(22169167..22169230) /note="source:CACAO_M_E70109_F106_scaffold_10 1775 1845" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22171111..22171737 /note="source:CACAO_M_E84368_F4_scaffold_10 5105 5734" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22171738..22177184) /note="source:CACAO_M_E70107_F62_scaffold_10 1 5447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22177185..22177619 /note="source:CACAO_M_E84368_F4_scaffold_10 5732 6138" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22180102..22180548) /note="source:CACAO_MITE_S250_scaffold_10 248 946" /mobile_element_type="transposon:TIR/MITE" mobile_element 22180549..22181260 /note="source:CACAO_Again_on_E210_scaffold_9 656 1413" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22181261..22181416) /note="source:CACAO_MITE_S250_scaffold_10 1 247" /mobile_element_type="transposon:TIR/MITE" mobile_element 22184090..22184358 /note="source:CACAO_Mariner_E220_scaffold_9 8659 8926" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 22193554..22194024 /note="source:INTACT726_F314_scaffold_5-int 1 456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22193947..22194437) /note="source:scaffold_2_CACTA_0252 2481 3006" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22194018..22194966) /note="source:CACAO_M_E3935_F390_scaffold_1 1830 2785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22195383..22195464) /note="source:CACAO_M_S_E16543_F3_scaffold_2 4777 4856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22195405..22195472) /note="source:CACAO_M_E42343_F106_scaffold_5 6708 6764" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22195616..22195972 /note="source:CACAO_M_S_E16683_F28_scaffold_2 1632 2036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22196751..22196811 /note="source:INTACT726_F314_scaffold_5-int 13618 13656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22196788..22197602 /note="source:scaffold_4_CACTA_0509 8413 9279" /mobile_element_type="transposon:TIR/CACTA" gene 22197369..22200794 /locus_tag="TCM_045079" /note="dbxref CacaoGD:Thecc1EG045079" mRNA join(22197369..22197583,22197816..22197909, 22198363..22198487,22199402..22199680,22199785..22199902, 22200527..22200794) /locus_tag="TCM_045079" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006238t2" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00270t00004" CDS join(22197883..22197909,22198363..22198487, 22199402..22199492) /locus_tag="TCM_045079" /note="paralog of Thecc1EG006238t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19759.1" /translation="MILPVNLWTVDICGLYERKLNKLNPATQNITYDICVLYNFIDGL ANIIALVQKGHFKWMPFHHVIKDCDSRRTFTRPWSH" mobile_element complement(22199519..22199934) /note="source:scaffold_9_CACTA_0921 1377 1793" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22199918..22200251) /note="source:scaffold_10_CACTA_0140 763 1071" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22200278..22201047) /note="source:scaffold_6_CACTA_0699 1 732" /mobile_element_type="transposon:TIR/CACTA" gene 22204846..22295840 /locus_tag="TCM_045081" /note="dbxref CacaoGD:Thecc1EG045081" mRNA join(22204846..22206451,22206533..22206958, 22290876..22292298,22292345..22292910,22295728..22295840) /locus_tag="TCM_045081" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g35850.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045056t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s20690.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS join(22204897..22206451,22206533..22206958, 22290876..22292298,22292345..22292348) /locus_tag="TCM_045081" /note="paralog of Thecc1EG045056t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY19760.1" /db_xref="Phytozome:POPTR_0004s20690.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVE6" /translation="MAFIGEAALSAFFDSLFGKFTSSDFNFVTEKRVRKEIMKWETIL RTIHAVLADAEERKMKNQAVKIWLADLQDLAYDVDDILDEFASQALRRKLMKEREAST SKAHKFLTSLNSSSIMFNYKMMSKIKEITGRLEDLATRKINLQLENYVGRPMTIPKSK PSTSLVNEDTVRGRDKDKKAIIDLLLRKDGNDAGVSVIPITGMGGIGKTTLAQLVYND SNIRDHFDLKAWVCVSHEFDVIKITKTILESVTFEPCDITDLNLLQFKLKEKLSRKKF LFVLDDVWTENYNDWMRLRSPFDAGISGSKIIITTRSSNVSSIMRSVADYLLQSLSED DSLSLLSHHALARGDFTGHPDLKEIGLEIVKKCGGLPLAIKTIGGLLRTRENHDAWKY ILMSDIWSIPEEKSDIIPALWLSYYYLPPQLKQCFAYCYLVPKDYEFKEEEIVLLWMA EGFLIGANTKRATKDLGSKYFEELVSRSFFQASRKNQSQFVMHDLINDLAQLVAGEIY FKRERYDDMKAKFLRTYLPFDMMMMRRYGRCYLSSNVLDDLLPRLKCLRVLSLKRYYI TKIPSSIGNLKHLRYLDFSYTEIKGLPDSICTLYNLETLLLRFCDGIEKLPMKIGILD NLCHLDITGANSIKEMPSGIGKLTNLQVLSTFIVGQAQYAWEAKLSGKSSLNNLELSW SRNFNENLRNKEVVGEVLTLLQPHEELKALAIKYYAGLTFPIWLEDGSLKNLQFLNLE DCQNCKLLPAIGKLPLLKHLCIKGMRSVISVGIEFHGVNWPNLFPSLETLHFEDMLEW KEWKVCEINKQGKKFCCLRELLLKNCPKLVRTLPNDLHSLEKLVIRNCQELTVSVSNL PMLCEFEIDGCKEVVLESFDDLWSVKKIILSNISKFTCVTKETKKLESAKVVNLQING CEELTSLWQTKWGWLAPLRSLHSLKFQNCPQVVCIGATDEEEEELLQLELPCNIEYVI LVGCQGLERLSKSLQNLTCLTKLNIVRCSKLVSLSVDSLPLTLRTLDISDCENLQCLL DDEENINFSSTSLLESLDIGCCEALKSLSSSGKLPVRCKKLFIYECPVLRFLAQNIGD NACLESISLHNCINIKYLPQGLDKLNHLQEIDFDCCPSLVGFPESGF" mobile_element complement(22213789..22215108) /note="source:CACAO_M_E49037_F305_scaffold_6 1443 2774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22215096..22215953) /note="source:CACAO_M_E5326_F22_scaffold_2 8706 9563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22215943..22217773) /note="source:INTACT701_F305_scaffold_10-int 6903 8734" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22221315..22223367 /locus_tag="TCM_045086" /note="dbxref CacaoGD:Thecc1EG045086" mRNA join(22221315..22221847,22222514..22222710, 22223236..22223367) /locus_tag="TCM_045086" /product="Disease resistance RPS2-like protein" /inference="similar to AA sequence:ricco:30063.m001411" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(22221443..22221847,22222514..22222710, 22223236..22223335) /locus_tag="TCM_045086" /note="dbxref ricco:30063.m001411" /codon_start=1 /product="Disease resistance RPS2-like protein" /protein_id="EOY19761.1" /translation="MKRIFCLFWTIFGMEATMIGTFFSPLEVGGLRSKIIMTTWNQNV SSIMRSVPDYSLKELPSDDCLFILAQHSLGEKGFNYHLNLKEIREQIVKKCNGLPLAA KTIGGLPHTRVDPDAWQDVLENEIWNSSEEKCGGTAEARVIYALMGLQEEAVMNKLRI HRCNLMNVLCCSMASVASGQKVSRVIGGVEDLKLTCEDNFSLATPNGSLHCPPPYATL SFGSLLSAFHERLIT" gene complement(22225961..22233765) /locus_tag="TCM_045087" /note="dbxref CacaoGD:Thecc1EG045087" mRNA complement(join(22225961..22226016,22232934..22233394, 22233536..22233765)) /locus_tag="TCM_045087" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s18720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038208t1" /inference="similar to AA sequence:Phytozome:POPTR_0027s00300.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(22226714..22231993) /note="source:CACAO_M_S_E119996_F187_scaffold_10 1 5280" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(22233057..22233394,22233536..22233659)) /locus_tag="TCM_045087" /note="paralog of Thecc1EG038208t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY19762.1" /db_xref="Phytozome:POPTR_0027s00300.1" /translation="MSMAVEQTSLGINFLQNFGAMPSLKKIDLSSSGLSGTLPTESFC QLKHLEYLDISENNLKGNLPECFSNLTSLEILDLSSNQFSGNISCLRNLTSLQEFYLS NNNFEIPSSLRPFFNLSKLKCIYADNNTIYAETEMHYFPPRFHFNQISLSC" mobile_element 22240949..22242296 /note="source:CACAO_M_S_E99903_F108_scaffold_9 142 1494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22242292..22244702) /note="source:INTACT362_F205_scaffold_1-int 1 2481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22244850..22246134) /note="source:CACAO_hAT_E410_scaffold_1 3884 5166" /mobile_element_type="transposon:TIR/hAT" mobile_element 22246130..22247582 /note="source:CACAO_Again_on_S_E228_scaffold_7 1333 2791" /mobile_element_type="transposon:TIR/hAT" gene 22250521..22400503 /locus_tag="TCM_045091" /note="dbxref CacaoGD:Thecc1EG045091" mRNA join(22250521..22250611,22375129..22375438, 22375543..22375667,22375756..22375902,22400441..22400503) /locus_tag="TCM_045091" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00931t00003" mobile_element complement(22252112..22252238) /note="source:CACAO_Helitron_S_E62_scaffold_9 1 153" /mobile_element_type="transposon:Helitron" mobile_element 22258237..22259534 /note="source:scaffold_5_CACTA_0601 11258 12556" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22258598..22261493 /note="source:INTACT190_F166_scaffold_7-int 3752 6683" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22270861..22270985) /note="source:CACAO_on_E33_A_scaffold_3 2915 3038" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22271489..22271593) /note="source:CACAO_PIF_E119_scaffold_3 2156 2265" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22272675..22273555) /note="source:CACAO_LINE_E_23_scaffold_10 1 881" /mobile_element_type="retrotransposon:LINE/L1" gene 22278044..22285171 /locus_tag="TCM_045093" /note="dbxref CacaoGD:Thecc1EG045093" mRNA join(22278044..22282015,22284013..22284087, 22284935..22285059,22285147..22285171) /locus_tag="TCM_045093" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:frave:gene34119.7" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045056t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s20690.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS 22278069..22281983 /locus_tag="TCM_045093" /note="paralog of Thecc1EG045056t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY19764.1" /db_xref="Phytozome:POPTR_0004s20690.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2Y0Z9" /translation="MKNKAVKIWLADLQDLAYDIDDILDEFATEALGRKLMEEHQAST SKAKKFLSSLNPGSIMFNYKMMSKIKEITGRLDDLATKKINLQLENYVGRPMTIPKSK PSTSLVNEATVRGRDGDKKAIIDLLLRKDGNDAGVSVIPITGMGGIGKTTLAQLVYND SSIRDYFDLKAWVCVSNEFDVIKITKTILESVTSQSCNKNDLNSLQVELKKNLLGKKF LLVLDDVWNENYDDWTKLRSPFEAGITRCKIIVTTRSSNVSSIMRSVADYTLQILSND DSLFMLAHHALERGDFIEHPDLKEIGLEIVKKCGGLPLAIKTIGGLLRTKVNHDAWKD ILESDIWNLPEEKSDLTPALWLSYYYLPSQLKQCFAYCSLVPKDYEFKEEEIVLLWMA EGFLNGANTKRKIQDLGSKYFEELVSRSFFQASNKYESQFVMHDLINDLAQFIVGEIY FKRERQDDMKSPISRTRHSSYIIGEFDRIEKFETFFEAKSLRTYLPFEMTQHWSCFLS NNVLNDLLPALKCLRVLSLKRYYITEIPYSIGNLKHLRYLDFSYTEIKSLPNSICSLY NLETLLLRCCGNFEKLPIKIGILDNLCHLDMTGANSIKEMPSGIGKLTNLQVLSNFIV GQGDGLNIREMQNLLNLKGQLCISELHNVDEAQHVWEAKLSSKLDLENLELKWSRDFN ENLRRKEVEKEVLNSLQPHKDIKELAIKYYGGIEFPDWVEDDSFKNLQVLRLEYCENC TFLPGVGKLPLLKHLYVKGMRSVISVGNEFHGVNEPKVFPSLKTLHFEDMLEWKEWKL YEVDEQGNKFCCLQELFIDNCPKLEITLPDQLHSLEKLVIRKCQELVVLVSNLPMLCQ VEIDGCKEVVLGSYDDLWSVKKISLSNISKFACVTKEMKMVESMKVEVLEINSCEELT SLWQTKWGWLAPLRSLRTLEFENCPQVVCIGRGAREEAKEELWQLEIPCNIESVRLRY CEGLERLSKTFHNLTCLTELVIEKCPKLVSLSTDNLPPALRTLCIRYCENLQCLLDDK ENINFSSTSLLQSLDIRDCKALKSLSWSGKLPMQLKQLFNFYCPELEYLAREIGDDTS LESINLWSCRNIKYLPQGLDKLSRLQQISLRDCPNLVRLPEALPNLHHLQHLTIEECP RVQNSIGERGFPTNLTSLQIYEPNISKAVMEWGLHRLTSLTLLFINGGSCINAVSFPQ KEIGMKLPPSLTLLAIENFKNVRKLSSDGFQNLTSLQSLKIGNCPKLKSIPRKEMLPS LLRLHIWECPVLKKRCKRDEGKQWSNIAHVPEVRIDGRFIYE" mobile_element 22301096..22306061 /note="source:INTACT194_F169_scaffold_1-int 1 4931" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22309926..22310494) /note="source:scaffold_1_CACTA_0009 13257 13828" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22310204..22316888 /note="source:CACAO_M_E33977_F20_scaffold_4 5405 12062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22316734..22318523) /note="source:CACAO_Mutator_E1888_scaffold_9 1007 2795" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22316738..22319755 /note="source:scaffold_9_CACTA_0922 4260 7245" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22319492..22321212 /note="source:CACAO_M_E33977_F20_scaffold_4 14822 16541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22321571..22324881) /note="source:CACAO_M_S_E119990_F19_scaffold_10 1 3311" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22325993..22327985) /locus_tag="TCM_045101" /note="dbxref CacaoGD:Thecc1EG045101" mRNA complement(join(22325993..22326967,22327214..22327360, 22327592..22327705,22327789..22327985)) /locus_tag="TCM_045101" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(22326468..22326967,22327214..22327360, 22327592..22327670)) /locus_tag="TCM_045101" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19765.1" /translation="MYSSFLPSNFLQGIGTLNSLKRLSLSEWQNLTDLEELSLQLSFL PSNLFQGIGTLNSLKSLSLYGGGVNGNFSINGPLHYDPKVVGQHLEEIVMADNHLQDP IPEEFCNLNLHLKFLDLSMNNISGTLPPCFNPSRISHVYLSKGSLPITFRESSLLVTL DLGYNHFTGNIPNWISKLSTTESPLSTSKVSVGDRKDDGSIDMSVFYVTLIVSYVVEL LAVVVVLCINPYWRRAYSIMQKW" gene 22328760..22332813 /locus_tag="TCM_045102" /note="dbxref CacaoGD:Thecc1EG045102" mRNA join(22328760..22328813,22329119..22329195, 22329275..22329497,22330197..22330395,22330472..22330564, 22330674..22330932,22331237..22331460,22331775..22331855, 22331976..22332813) /locus_tag="TCM_045102" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS join(22328809..22328813,22329119..22329195, 22329275..22329497,22330197..22330395,22330472..22330564, 22330674..22330932,22331237..22331460,22331775..22331855, 22331976..22332335) /locus_tag="TCM_045102" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19766.1" /translation="MSHTTSGLQLLQVACRTFPSIYWESNVHLNWFPTLTQQCLPSSL SDHNPIALGESSFDWGPKPFKFFKHWLDDVSFQEVFKKARVNCERDGVTGDDIWQKLK PISLVSSIYKIIAKTLANRIRSVVEKVVGNCQFGFIRGRQIFDCALIANEVVDDIQKD NISGVFLKLMEEVDERLSFNCFNLYPCEWDSHQEDLFKNVGKLPSTYLGLPLGASLSS KAIWQPVLERCKAKLAGWKANILSIGGRISLIKAVLSNLPIYFMSILKMPKGVQEELD KMRRKFLWGGLGVVVGNGCTVLFWQDEWIDGVVLKDAFWEKEQWIGLLQIIGGFFLKE ELHDKLIGRILLTVPILQNRFIRRWLIGKGRMEIWNMGFFAIIWSVWLSRNDVISAIS RCISMRGRTLERRRSCAVNLNPINLNLTLTGIERESGRSGIGGVLRDDQGKVLIAFSK SVGMGNANFAELLAIKEALLIFVASDWVSSHELIIESDSVTAIKRVKNPEPASWRL" mobile_element 22336582..22336948 /note="source:CACAO_M_E49298_F73_scaffold_7 1 367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22337310..22339160 /note="source:CACAO_M_E49298_F73_scaffold_7 729 2581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22339267..22340473) /note="source:INTACT219_F174_scaffold_9-int 2577 3785" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22340487..22340524) /note="source:CACAO_M_E2851_F53_scaffold_1 3629 3665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22342516..22344343 /note="source:INTACT14_F108_scaffold_9-int 105 1943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22344344..22345781) /note="source:CACAO_M_E70101_F9_scaffold_10 1 1438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22345782..22347797) /note="source:INTACT362_F205_scaffold_1-int 1 2098" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22351159..22374232 /locus_tag="TCM_045104" /note="dbxref CacaoGD:Thecc1EG045104" mRNA join(22351159..22351483,22351714..22353779, 22353867..22354437,22374015..22374232) /locus_tag="TCM_045104" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045093t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17334t1" CDS join(22351210..22351483,22351714..22353779, 22353867..22354437,22374015..22374031) /locus_tag="TCM_045104" /note="paralog of Thecc1EG045093t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY19767.1" /translation="MAFIADAALSAFFDSLFAKFSSSDFNFVTEKQVRKQIMTWETKL RDIHAVLADAEEKKMKNQTVKNWLADLQDLAYDVDDILDEFATQALGPTVRGRDKDKE AILDLLLRDDGIDAGVCVIPIVGIGGIGKTTLAQLVCNDSRITQHFDLKAWVCVSDEF DVVKVTKIILQSVTSESCDINDLNLLQVKLKEKLSSKKFLLVLDDVWNENYDDWTKLR SPFDAGIPGSKIIVTTRSFNVSSIMRSVADYSLQSLSNDDSLFMLAHHALGRGDFTKH PDMKGIGFEIVKKCGGLPLAIKTIGGLLRTKVNRDAWKDILESDIWNLPEEKSDITPA LWLSYYYLPSQLKQCFAYCSLVPKDYEFKKEEIVLLWMAEGFLNGANTKRKIQDLGSK YFEELVSRSFFQASNKNESQFVMHDLINDLAQFIAGDIYFKRERHDDMKGPINRTRHS SYIIGSYDGIKKFETFFEAKSLRTYLPFEMMQQWRCYLSNNILNDLLALKCLRVLSLK RYRITEIPSSIGNLKHLRYLNFSYTKIKSLPNSICSLYNLETLLLRYCENFEKLPLKI GILDNLCHLDMTDANLIKEMPSGIGKLTNLQVLSNFIVGQGDGLNIREMQNLLNLKGQ LCISELHNVDEAQHAWEAKLSSKCDLDNLELKWSADFNENLRKKEVEKEVLNSLQPHK DIKELAIKYYGGIEFPDWVEDDSFIYLQVLRLKYCENCTFLPGVGKLPLLKHLYVKGM RSVISVGNEFHGVNGPNVFPSLETLYFEDMPEWKEWKLYELHSLEKLVIRGCKELVVS ISNLPMLCKVEIDGCKEVVFGSYDDLWSVKKILLSNISKFACVMKEMKMLESMKAEKV QINGCEELTSLWQTKWGWLAPLRSLRTLQFENCPQVVCLGGGLKEEAKEELVQLEIPC NIEFVRLRCCEGLERLSKTFHNLTCLTKLDIEKCPKLVSLSTDNLPPTLRNLYIRSST IYR" mobile_element 22354555..22355912 /note="source:CACAO_M_E70014_F74_scaffold_10 1 1687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22361206..22361931 /note="source:INTACT1330F_F382_scaffold_8-int 6623 7348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22362032..22363409 /note="source:INTACT1330F_F382_scaffold_8-int 7401 8778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22367206..22368314 /note="source:INTACT52F_F339_scaffold_1-int 8621 9727" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22368704..22370661 /note="source:CACAO_M_E3969_F127_scaffold_1 115 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22370343..22398666 /locus_tag="TCM_045107" /note="dbxref CacaoGD:Thecc1EG045107" mRNA join(22370343..22370425,22370633..22371433, 22397903..22397977,22398280..22398666) /locus_tag="TCM_045107" /product="CC-NBS-LRR protein" /inference="alignment:exonerate- protein:2:frave:gene34119.8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045109t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s20690.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc207t43" CDS join(22370394..22370425,22370633..22371401) /locus_tag="TCM_045107" /note="paralog of Thecc1EG045109t1" /codon_start=1 /product="CC-NBS-LRR protein" /protein_id="EOY19768.1" /db_xref="Phytozome:POPTR_0004s20690.1" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MYR4" /translation="MVPFVERASRRRVSEPARHDSKLPVQLKKLLIFGCPELECLARE IGDNTCLESIELSFCSNITYLPQGLDKLSRLQDISLWDCPNLVRLPEALPNLHHLQQL SIIGCPRVQNSIGERGFPANLTSLEIYDPNISKAVMEWGLHRLTSLTHLDIDGSNCTD ATSFPQEGIGMKLPPSLINLTLKNFKNVGKLSSNGLQNLTSLQCLSISHCPKLKSIPR KEMLPSLLRLYIWECPVLKKRCKRDEGKQWSNIAHVPEVRIDGRFIYE" CDS join(22375637..22375667,22375756..22375902, 22400441..22400448) /locus_tag="TCM_045091" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19763.1" /translation="MSVVPCLLMPWMNKTHDFVSHSNALKIKVGKVSRQHVSVCLGTS GFLDPFFKKKNHLIEHP" mobile_element complement(22377802..22378110) /note="source:CACAO_on_E6_scaffold_1 2919 3198" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22378626..22378814) /note="source:CACAO_on_E86_scaffold_1 5 184" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22381570..22382157) /note="source:INTACT135F_F90_scaffold_2-int 13385 14002" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22382158..22382840) /note="source:scaffold_2_CACTA_0244 13466 14689" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22385204..22385616) /note="source:INTACT654_F287_scaffold_8-int 1496 1902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22385941..22386003) /note="source:INTACT654_F287_scaffold_8-int 1060 1122" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22385961..22386005 /note="source:CACAO_M_E58819_F24_scaffold_9 15351 15395" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22388834..22399449 /locus_tag="TCM_045109" /note="dbxref CacaoGD:Thecc1EG045109" mRNA join(22388834..22389247,22391882..22393203, 22393399..22395801,22397840..22397977,22399409..22399449) /locus_tag="TCM_045109" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate-protein:2:frave:gene34119" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045093t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s20690.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc207t59" CDS join(22389194..22389247,22391882..22393203, 22393399..22395790) /locus_tag="TCM_045109" /note="paralog of Thecc1EG045093t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY19769.1" /db_xref="Phytozome:POPTR_0004s20690.1" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVE6" /translation="MDKPASYSLQLLMCGNVVNKAVKIWLADLQDLAYDVDDILDEFA TEALGRKLMKAHQASTSKAQKFLTSLNPRSIMFNSKMMSKIKEITGRLEDLATRKINL QLEKYVGRPMTIPKSKPSTSLVNEATVQGRDKDKRAIIDLLLRKDGNDAGVSVIPITG MGGIGKTTLAQLVYNDNSIRDYFDLKAWVCVSNEFDVIKITKTILESVTSQSCDRNDL NSLQVELKENLSGKKFLLVLDDVWNENYDDWTKLRSPFDVGTSGSKIIITTRSSNVSS IMRTVADYSLQILSDNDSLCMLAHHALERVDFTGHLDLKEIGMEIVKKCGGLPLAIKT IGGLLRTKVNHDAWNYILKSDIWNLPEDKSDITPALWLSYYYLPSQLKQCFAYCSLVP KDYEFKVEEIVLLWMAEGFLNRANTKRKMEDLGGKYFEELVSRSFFQASSENESQFVM HDLINDLTHNNVLNDLLPALKCLRVLSLKRYYITEIPSSIGNLKHLRYLDFSYTNIKS LPDSICTLYNLETLLLWFCGRFEKLPLKIGILDNLCHLDMIGANSIKEMPSGIGKLTN LQVLSNFIVGQGDGLNIREMQNLLNLKGQLCISELHNVDEAQHVWEAKLSSKLDLENL ELKWSRDFNENLRRKEVEKEVLNSLQPHKDIKELAIKYYAGITFPIWLGDVSFKNLQS LELEDCENCTLLPGVGKLPLLKHLYVKGMRSVISVGNEFHGVNGPNVFPSLETLHFED MPEWKEWKLYEVDEQGKKFCCLQELFVENCSNLERTLPDQLHSLEKLVIRECEELVVL ISNLPMLCEVEIDGCKEVVLGSYDDLWSAKKIRLSNISEFACVTKEMKMVQSMKVEDL QINNCEKLTSLGQTKCWWLEPLRSLRTLKFENCPQVVCIGGGAKEEEKEELLQLEIPC NIEYVRLAACQGFERLSKTFSNLTCLTKLSIVECPKLVSLSTDNLPPTLRTLEIWSCE NLECLLDDKENINFSSTSLLQSLYILVCKALKSLSWSGKLPVQLKRLLISGCPELECL AREIGDNTCLESIELNDCKNIQYLPQGLDKLSRLQRISLRECPNLVRLPEALPNLHHL QQLSIRGCPRVQNSIGERGFPTNLTSLSIDDHNISKAVMKWGLHRLTSLTILHIDGSN CTDATSFPQEEIGMKLPPSLTYLSIRNFKNIRKLSSNGFQNLTSLQSLEIYHCPKLKS IPRKEMLPSLSQLEIWYCPVLKKRCKRDKGKQWSNIAHIPYVTIDARFIYG" gene complement(22401826..22404066) /locus_tag="TCM_045111" /note="dbxref CacaoGD:Thecc1EG045111" mRNA complement(join(22401826..22402719,22402814..22403288, 22403555..22404066)) /locus_tag="TCM_045111" /product="Eukaryotic aspartyl protease family protein" /inference="alignment:exonerate- protein:2:ricco:30131.m007181" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034491t1" /inference="similar to AA sequence:ricco:30131.m007181" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc213t9" CDS complement(join(22402364..22402719,22402814..22403288, 22403555..22404013)) /locus_tag="TCM_045111" /note="dbxref ricco:30131.m007181; paralog of Thecc1EG034491t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein" /protein_id="EOY19770.1" /db_xref="TAIR:AT3G54400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K5B9" /translation="MKTHLVSLVFLFFSLAEGLHPKCDTQDHGSNLQVFHIYSPCSPF KPSKPLSWEEDLLQTQAKDQARLQYLSSLVAKKSVVPIASGRQIVQSPTYIVRAKIGT PPQTMLMAMDTSNDAAWLPCSGCLGCSSSVFDNAKSTTFKALGCQAGQCKQVPNPTCD GSACIFNMTYGGSSIAANLSQDTITLATDPVPSYTFGCLQKTTGNSVPPQGLLGLGRG PLSLLSQTQNWYQSTFSYCLPSFRSLNFSGSLRLGPVGQPLRIKYTPLLKNPRRPSLY FVNLIGIRVGRKIVDIPPSDLAFNPTTGSGTIIDSGTVFTRLVATAYVAVRDEFRRRV RVTNVTSLGGFDTCYTGPIVAPTITFMFAGMNVTLPQDNLLIHSTAGSITCLAMASAP ENMNSVLNVIANMQQQNHRVLFDVPNSRLGVARELCT" mobile_element complement(22404816..22404868) /note="source:CACAO_Helitron_SS_E51_scaffold_6 7443 7494" /mobile_element_type="transposon:Helitron" mobile_element 22409523..22409620 /note="source:scaffold_1_CACTA_0011 7476 7580" /mobile_element_type="transposon:TIR/CACTA" gene complement(22412401..22420497) /locus_tag="TCM_045112" /note="dbxref CacaoGD:Thecc1EG045112" mRNA complement(join(22412401..22412429,22413912..22413994, 22416200..22416313,22416449..22416520,22416627..22416696, 22416787..22416884,22417168..22417369,22417460..22417527, 22418351..22418966,22420366..22420497)) /locus_tag="TCM_045112" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007182" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040917t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06550.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc515t5; alternateUTRof:Thecc1EG045112t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc515t7" mRNA complement(join(22412402..22412429,22413912..22413994, 22416200..22416313,22416449..22416520,22416627..22416696, 22416787..22416884,22417168..22417369,22417460..22417527, 22418351..22418966,22420088..22420286)) /locus_tag="TCM_045112" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007182" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040917t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06550.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc515t7" mobile_element complement(22413224..22413398) /note="source:scaffold_9_CACTA_0944 1 148" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(22413932..22413994,22416200..22416313, 22416449..22416520,22416627..22416696,22416787..22416884, 22417168..22417369,22417460..22417527,22418351..22418770)) /locus_tag="TCM_045112" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040917t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19771.1" /db_xref="Phytozome:POPTR_0001s06550.1" /db_xref="TAIR:AT5G13500.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HNG7" /translation="MIVRKNMGRLSPLLLVTLVLGFCFATYNLVTMVMHNRSISKWKV NDSNGGIFFDPVIEMPENVKKPNNAKQPFHVALTATDAPYSKWQCRVMYYWYKKQKDL PGSEMGGFTRVLHSGSPDNLVDEIPTVIVDPLPAGLDRGYIVLNRPWAFVQWLEKATI EEEYILMAEPDHIFIRPLPNLGHGGYPAAFPFFYIKPAQNEKLLRKFYPEEMGPVTNI DPIGNSPVIIKKDLLEKIAPTWMNVSLKMKNDPETDKAFGWVLEMYAYAVASALHGVQ HILRKDFMLQPPWDLETGKKFIIHYTYGCDYNMKGELTYGKIGEWRFDKRSYLRGPPP RNLSLPPPGVPESVVTLVKMVNEATANIANWDAE" CDS complement(join(22413932..22413994,22416200..22416313, 22416449..22416520,22416627..22416696,22416787..22416884, 22417168..22417369,22417460..22417527,22418351..22418770)) /locus_tag="TCM_045112" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040917t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19772.1" /db_xref="Phytozome:POPTR_0001s06550.1" /db_xref="TAIR:AT5G13500.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HNG7" /translation="MIVRKNMGRLSPLLLVTLVLGFCFATYNLVTMVMHNRSISKWKV NDSNGGIFFDPVIEMPENVKKPNNAKQPFHVALTATDAPYSKWQCRVMYYWYKKQKDL PGSEMGGFTRVLHSGSPDNLVDEIPTVIVDPLPAGLDRGYIVLNRPWAFVQWLEKATI EEEYILMAEPDHIFIRPLPNLGHGGYPAAFPFFYIKPAQNEKLLRKFYPEEMGPVTNI DPIGNSPVIIKKDLLEKIAPTWMNVSLKMKNDPETDKAFGWVLEMYAYAVASALHGVQ HILRKDFMLQPPWDLETGKKFIIHYTYGCDYNMKGELTYGKIGEWRFDKRSYLRGPPP RNLSLPPPGVPESVVTLVKMVNEATANIANWDAE" mobile_element complement(22419432..22419514) /note="source:scaffold_7_CACTA_0779 2923 3006" /mobile_element_type="transposon:TIR/CACTA" gene complement(22419497..22425955) /locus_tag="TCM_045113" /note="dbxref CacaoGD:Thecc1EG045113" mRNA complement(join(22419497..22419736,22423406..22424012, 22424221..22424399,22425835..22425955)) /locus_tag="TCM_045113" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" mobile_element complement(22420971..22421494) /note="source:CACAO_on_E77_scaffold_13 56 497" /mobile_element_type="transposon:TIR/hAT" mobile_element 22421532..22421581 /note="source:scaffold_10_CACTA_0140 5930 5977" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22422655..22422748) /note="source:CACAO_Mutator_E592_scaffold_3 3626 3722" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22422667..22422984 /note="source:scaffold_7_CACTA_0795 2893 3274" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(22423848..22424012,22424221..22424399, 22425835..22425841)) /locus_tag="TCM_045113" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19773.1" /translation="MEKGPESPDNTIIAALCKDNRATEALKLSSEMRGQGIPPTVVTS NSLIHAMCNSCLWLFVKTIERLSVAQELFKEMMSTPGVVPNMIIYSALLYGLCTHGRI YDALGLFSVMRNNG" mobile_element complement(22425970..22426057) /note="source:INTACT433_F212_scaffold_1-int 3063 3149" /mobile_element_type="retrotransposon:LTR/Copia" gene 22426280..22430668 /locus_tag="TCM_045114" /note="dbxref CacaoGD:Thecc1EG045114" mRNA join(22426280..22426609,22426698..22426889, 22428282..22428575,22429933..22430545) /locus_tag="TCM_045114" /product="NADPH:quinone oxidoreductase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06530.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00469t00001; inference alignment:Newbler:10:TSA:cgbaB_g00469t00001" CDS join(22426513..22426609,22426698..22426889, 22428282..22428575,22429933..22430345) /locus_tag="TCM_045114" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NADPH:quinone oxidoreductase isoform 1" /protein_id="EOY19774.1" /db_xref="Phytozome:POPTR_0001s06530.1" /db_xref="TAIR:AT3G27890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LK88" /translation="MEALQAAKPVIKVAALCGSLRKGSYNRGLLRTALEISKQSINGM QIEYIDISPLPMLNTDLEDNGKYPPAVEAFRQKILEADSILFASPEYNYSVTGPLKNA IDWASRPPNVWADKAAAIVSAGGSFGGGRAQYHLRQIGVYLDLHFINKPEFYLNAFQP PAKFDSDGNLIDPSSKQKIKEVLLALQAFTLRLQGCNFNLSAISELPRQSGRVSEEGP VLIPFTKGNIGQRFHANTEYKLGRTSEPYDQYDLETCNGERRVISQFQDKNFKLKDKL YNHNARERMYKMALAASWVLFLIVFMLSYWVKNVEDACCKRNVFSRSLDFWVAYS" mRNA join(<22426827..22426896,22428279..22428575, 22429933..22430668) /locus_tag="TCM_045114" /product="NADPH:quinone oxidoreductase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06530.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06530.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is weak, protein is partial5; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc123t6_C2; inference alignment:Newbler:10:TSA:cgbaB_g00469t00001; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc875t5" CDS join(<22426827..22426896,22428279..22428575, 22429933..22430345) /locus_tag="TCM_045114" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NADPH:quinone oxidoreductase isoform 2" /protein_id="EOY19775.1" /db_xref="Phytozome:POPTR_0001s06530.1" /db_xref="TAIR:AT3G27890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LK88" /translation="RRFWRLIASFLLPLSTTTLLLVCPGPLKNAIDWASRPPNVWADK AAAIVSAGGSFGGGRAQYHLRQIGVYLDLHFINKPEFYLNAFQPPAKFDSDGNLIDPS SKQKIKEVLLALQAFTLRLQGCNFNLSAISELPRQSGRVSEEGPVLIPFTKGNIGQRF HANTEYKLGRTSEPYDQYDLETCNGERRVISQFQDKNFKLKDKLYNHNARERMYKMAL AASWVLFLIVFMLSYWVKNVEDACCKRNVFSRSLDFWVAYS" gene complement(22432135..22437928) /locus_tag="TCM_045115" /note="dbxref CacaoGD:Thecc1EG045115" mRNA complement(join(22432135..22433022,22435196..22435262, 22437760..22437928)) /locus_tag="TCM_045115" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030907t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(join(22432426..22433022,22435196..22435234)) /locus_tag="TCM_045115" /note="paralog of Thecc1EG030907t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19776.1" /translation="MFFTLQVILLFYKLCRNEVIFRGKSFSPNKMRDIALLRHMLWCR GKWELGHVPADLCLMEPLCSNINTKRKNQRMATNWSTPPPGTLKLNTDGAAKGKPGPV GIGGVIRNHHGFIWGTFSENIGIEDSNFAEFYAIREGISFFFSSPWAATHSLVVENDS ANAINWAQHHCKVPWQMKNISNAIETFLRKSTRITFKKPTRLQTDWPKQGY" mobile_element 22433419..22433543 /note="source:scaffold_2_CACTA_0245 892 1015" /mobile_element_type="transposon:TIR/CACTA" gene 22439658..22444865 /locus_tag="TCM_045116" /note="dbxref CacaoGD:Thecc1EG045116" mRNA join(22439658..22441369,22441550..22441717, 22441976..22442141,22442483..22442599,22442707..22442900, 22443365..22443486,22443582..22443636,22443996..22444865) /locus_tag="TCM_045116" /product="Phosphatidylinositol-4-phosphate 5-kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19540.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024262t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19540.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc829t1" CDS join(22440252..22441369,22441550..22441717, 22441976..22442141,22442483..22442599,22442707..22442900, 22443365..22443486,22443582..22443636,22443996..22444284) /locus_tag="TCM_045116" /note="paralog of Thecc1EG024262t1" /codon_start=1 /product="Phosphatidylinositol-4-phosphate 5-kinase family protein" /protein_id="EOY19777.1" /db_xref="Phytozome:POPTR_0003s19540.1" /db_xref="TAIR:AT3G07960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFB8" /translation="MSKKLGFRKALETKVKKSQAAAKKKAISIFTAMSVAHVDDEEPG PGEVRHVEKVLSTGDFYTGQWCDSLPHGNGKFLWTDGCMYVGEWLKGKTMGKGRFSWP SGATYEGEFKSGFMDGKGTYTGSSGDTYKGSWVMNFKHGQGTQSYANGDYHEGEWRRG FQDGHGRYQWKNGNHYIGQWRNGMMNGNGTMIWSNGNRYDGFWEDGFPKGNGKFRWAD GSFYVGVWSKDGKEQSGTYYPSGSHSGNLDWDPQQLFLEDLKDCKICPGEKVSIFPSQ KMPHWPGMGKGNGGRPRRSSDARLGNYSWSSDANDVSAASEGDLRDENEGVGNLHHED SDTRGSLPQFKMPMKKQGLTISKGHKNYELMLNLQLGIRHSVGRPGPAITLDLKPSAF DPKEKVWTKFPPEGSKHTPPHQSCDFKWKDYCPVVFRTLRKLFNVDAADYMISICGND ALRELSSPGKSGSFFYLTNDDRYMIKTMKKAEVKVLIRMLPAYYNHVRSFENTLVTKF YGLHCVKLTGAAQKKVRFVIMGNLFCTDYSIHRRFDLKGSSHGRTTAKPESEIDSTTT LKDLDLNYIFRLQKLWYQEFCRQVDRDCDFLEQERIMDYSLLIGFHFREVSTPCTSGV CTPTGNGDCEKADKDKLLLSPSRLSSIRLGISMPARAEKTLRKSDCEAQLVGESTGVI YDVILFFGIIDILQDYDISKKLEHAYKSMQYDPTSISAVDPKQYSKRFRDFIFRIFVE DT" gene complement(22447602..22451286) /locus_tag="TCM_045117" /note="dbxref CacaoGD:Thecc1EG045117" mRNA complement(join(22447602..22447627,22449615..22449920, 22450395..22451286)) /locus_tag="TCM_045117" /product="Lateral root primordium protein-related, putative" /inference="alignment:exonerate- protein:2:ricco:30131.m007187" /inference="similar to AA sequence:Phytozome:POPTR_0003s19550.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc527t2" CDS complement(join(22449631..22449920,22450395..22450926)) /locus_tag="TCM_045117" /codon_start=1 /product="Lateral root primordium protein-related, putative" /protein_id="EOY19778.1" /db_xref="Phytozome:POPTR_0003s19550.1" /db_xref="TAIR:AT5G12330.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWY7" /translation="MLGLHNIFLIAPPPSQQNQQQPTPPPPPQAFNQDCNLSDTNFWT LRKSTTQESPVCQKKDGVLHSVEDGDGCFKVCRDCGNRAKKECGYSRCRTCCKSRGYD CATHVRSTWVPAARRKDRKVVVLGDDDGGGGGGGSSGSSSCGGKRPRVLNSTSNGTSS SNAASKSLNFEAGTSQQDSRFKESLPGQVRAPAVFRCIQVTAISDGEAEIAYQATVNI SGHVFKGFLYDQGVDVKNAFPCISKVLFESSSSGRDRDSSSPNVDPPNTFAASGD" gene complement(22454320..22462566) /locus_tag="TCM_045118" /note="dbxref CacaoGD:Thecc1EG045118" mRNA complement(join(22454320..22456177,22457781..22457883, 22457968..22458092,22459009..22459106,22459192..22459310, 22459959..22460029,22460150..22460168,22460270..22460329, 22460707..22460991,22461776..22462566)) /locus_tag="TCM_045118" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19560.1" /inference="similar to AA sequence:Phytozome:GSVIVT01013487001" /note="quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9121t5" CDS complement(join(22454889..22456177,22457781..22457883, 22457968..22458092,22459009..22459106,22459192..22459310, 22459959..22460029,22460150..22460168,22460270..22460329, 22460707..22460991,22461776..22462000)) /locus_tag="TCM_045118" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19779.1" /db_xref="Phytozome:GSVIVT01013487001" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UBN4" /translation="MSSITAASSSSLWLLPKPSPSKFSKFPPCPSFSPSSPPCYRVVC RSGSPQRASTDLSSALHDALDSTGIDTSHAREARKSFVLQIQKLSDIERETSISINRC VDLGRTALYIAAEDDSLISHSSVPLPVDAFLERLDDLSMGYCSHYNSSCRSSQENFLE SIEKYLFVKKGFRRSSAKNQAEPRALYLHSVLTHRSAYDKQKSKESDQPHIMTVQMLM EEILRNLKDAFWPFQHDHADSLFLRAAHAANCIDKYNGIQESGYQLASAKAAQHRLER GVWTSVHFGDMRRALAACERLILLQTEPKEMRDYSVLLYHCGLYEQALKYLELYQDTK SSSSENQPTNSVSNLEEDAVQKLIVRLNLIAMEEVSLVGALTPEAPSPCNQKPPLPPL PQPPTVPPQPPSPQPKPPQPPQPPSPSPQPKPPQPPSPQPKPPQPPSPQPKLPQPPSP QPPLPQPKPPQPPSPQPPSPQPKPPQPPSPQPKPPQPPSHQPPSPQPKPPQPPSPQPP SPQPPSPQPKLPQPPSPQPPSPQPKPPQPPSPQPKPPQPPLPQPPSPQPKPPQPPSPQ PPSSQPKPPQPPSPQPPSPQPKLPPPSPQPPLPQPKLPPQPPSTQPPSPQPKPPQPPS PQPPLPQPKPPQPPSPQPPTAPPQPPLPQPPPAPPQPPLPQPPPALPQPPLPQPPPAL PQPPLPQPPPPLQPGCPPPPDCNSDCEHPPEPDWPPYEPWVPPLINQNWKCWQSLNSI GNCIEEIIISVRTGNIVVGSACCYAFKDISDDCFNRMFVPYNPVLPLAIREHCFSLP" gene complement(22464260..22472783) /locus_tag="TCM_045119" /note="dbxref CacaoGD:Thecc1EG045119" mRNA complement(join(22464260..22464998,22465396..22465511, 22465632..22465763,22466131..22466205,22466349..22466447, 22466535..22466630,22467153..22467260,22467412..22467497, 22467919..22468113,22468665..22468788,22468877..22468983, 22469501..22469573,22470898..22470999,22471339..22471505, 22471630..22471748,22472599..22472783)) /locus_tag="TCM_045119" /product="Amidohydrolase family, ISF2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007193" /inference="similar to AA sequence:ricco:30131.m007193" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6000t2" mRNA complement(join(22464491..22464998,22465396..22465511, 22465632..22465763,22466131..22466205,22466349..22466447, 22466535..22466630,22467153..22467260,22467412..22467497, 22467919..22468113,22468665..22468788,22468877..22468983, 22470898..22470999,22471339..22471505,22471630..22471715)) /locus_tag="TCM_045119" /product="Amidohydrolase family, ISF2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30131.m007193" /inference="similar to AA sequence:ricco:30131.m007193" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6000t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6000t2" CDS complement(join(22464824..22464998,22465396..22465511, 22465632..22465763,22466131..22466205,22466349..22466447, 22466535..22466630,22467153..22467260,22467412..22467497, 22467919..22468113,22468665..22468788,22468877..22468983, 22469501..22469573,22470898..22470999,22471339..22471505, 22471630..22471708)) /locus_tag="TCM_045119" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m007193" /codon_start=1 /product="Amidohydrolase family, ISF2 isoform 1" /protein_id="EOY19780.1" /db_xref="TAIR:AT3G55850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UBN5" /translation="MNRFIVISASIAIFLSILFFHLLDSNYWLKWRASLVPSPKLAVD LIVKNGVIFTSDPSFPFADSMAIRDGRILRVGNYSSLQDLSGYGTKELNLEGKIVVPG FIDSHVHLIFAGLQMVRVQLQGVNQKDEVVRRVKEAALKAKRGSWILGGGWNNELWGG ELPVASWIDDVTSDNPVWLTRMDGHMGLANSVALKLAGVTNLSKDPNGGTIMRTSDGE PIGLLIDAAMELILARIPEVSVDERREAMLRASSFALTRGVTAVVDFGRYFPGAPVEH SWQDFSDVYQWADSSGMMIIRVCLFFPMETWSRLYDVIRKAGHALSNWIYFGGVKAFA DGSLGSNSALFHEPYFDDPHNSGLQVVESESLFNMTMASDKSGLQVAIHAIGDRANDL ILDMYESVASTNGKRDRRFRIEHAQHLAPGTADGFGQQGIIASVQPDHLLVDADAAIR KLGVDRAQKGSYLFQSLLLSNALLALGSDWPVTSIYPLQAIRTAMKRIPSGWENAWIP SECLSLNDAVIAHTISAAQACFLENEIGSLSTGKLADFVILSTDSWDEFATEGSASVE ATYVGGMQAYP" CDS complement(join(22464824..22464998,22465396..22465511, 22465632..22465763,22466131..22466205,22466349..22466447, 22466535..22466630,22467153..22467260,22467412..22467497, 22467919..22468113,22468665..22468773)) /locus_tag="TCM_045119" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m007193" /codon_start=1 /product="Amidohydrolase family, ISF2 isoform 2" /protein_id="EOY19781.1" /db_xref="TAIR:AT3G55850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UBN5" /translation="MDGHMGLANSVALKLAGVTNLSKDPNGGTIMRTSDGEPIGLLID AAMELILARIPEVSVDERREAMLRASSFALTRGVTAVVDFGRYFPGAPVEHSWQDFSD VYQWADSSGMMIIRVCLFFPMETWSRLYDVIRKAGHALSNWIYFGGVKAFADGSLGSN SALFHEPYFDDPHNSGLQVVESESLFNMTMASDKSGLQVAIHAIGDRANDLILDMYES VASTNGKRDRRFRIEHAQHLAPGTADGFGQQGIIASVQPDHLLVDADAAIRKLGVDRA QKGSYLFQSLLLSNALLALGSDWPVTSIYPLQAIRTAMKRIPSGWENAWIPSECLSLN DAVIAHTISAAQACFLENEIGSLSTGKLADFVILSTDSWDEFATEGSASVEATYVGGM QAYP" mobile_element 22473309..22473414 /note="source:INTACT72F_F343_scaffold_2-int 10044 10136" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22474070..22476853) /locus_tag="TCM_045120" /note="dbxref CacaoGD:Thecc1EG045120" mRNA complement(join(22474070..22474111,22474354..22475155, 22476238..22476853)) /locus_tag="TCM_045120" /product="Matrixin family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046068t1" /inference="similar to AA sequence:ricco:29822.m003413" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage" CDS complement(join(22474101..22474111,22474354..22475155, 22476238..22476348)) /locus_tag="TCM_045120" /note="dbxref ricco:29822.m003413; paralog of Thecc1EG046068t1" /codon_start=1 /product="Matrixin family protein" /protein_id="EOY19782.1" /db_xref="TAIR:AT1G24140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HL58" /translation="MVARQALSFHDPSFFWLFFWFLSVVLSGNLRVLVFSVTQKTKSH PHFICDKLKYLEIFGYLSYSKNKTHANDDYFDDLLESAIKTYQLKFHSNSDGVLGAKT VSKMMMPRCGVADIINGPSRMRSGKQKGPHFYFFPGNLRWPKFQLTYAFLPGTREDAI NPAGGAFQKWAANTQFTFSRIDKYTDADITVSFERGDHNDGHPFEGPHYGDLALATAP TGWIFRYNGECQWSESVTQDSFHLETVALHAIGHLLGLEHTSDEMALCTQASGLEYPR IWIRMLLKESRLYIRNDELSSEILYIYVDQA" mobile_element complement(22477500..22477552) /note="source:scaffold_2_CACTA_0252 12891 12943" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22477511..22477552 /note="source:CACAO_on_E453_scaffold_2 2 43" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22477515..22477556) /note="source:CACAO_on_E565_scaffold_5 13802 13843" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22477553..22477566 /note="source:scaffold_2_CACTA_0243 6534 6591" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22478236..22478912) /note="source:scaffold_4_CACTA_0482 16796 17467" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22480765..22480866 /note="source:CACAO_on_S_E46_scaffold_2 2859 2961" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(22481491..22481566) /note="source:scaffold_2_CACTA_0243 14670 14744" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22484264..22485457) /note="source:INTACT556_F252_scaffold_2-int 1730 2945" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22488578..22489607 /locus_tag="TCM_045121" /note="dbxref CacaoGD:Thecc1EG045121" mRNA 22488578..22489607 /locus_tag="TCM_045121" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.85 coverage" CDS 22488892..22489122 /locus_tag="TCM_045121" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19783.1" /translation="MTLSVNYGRVQMHCTKMSAGCFRGTNGHLPTPLRVAIKLAFCSL GGEGGFERNPKRVKKQVEGKNVEEKTLETKNP" mobile_element 22490055..22490130 /note="source:CACAO_M_E12463_F12_scaffold_3 4522 4597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22490079..22490136 /note="source:CACAO_Again_on_E64_scaffold_2 672 731" /mobile_element_type="transposon:TIR/hAT" mobile_element 22490112..22490346 /note="source:scaffold_6_CACTA_0701 2599 2842" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22490884..22491545 /note="source:CACAO_Again_on_E123_scaffold_5 231 866" /mobile_element_type="transposon:TIR/hAT" mobile_element 22491546..22491695 /note="source:scaffold_2_CACTA_0256 17366 17910" /mobile_element_type="transposon:TIR/CACTA" gene 22492171..22494326 /locus_tag="TCM_045122" /note="dbxref CacaoGD:Thecc1EG045122" mRNA join(22492171..22493091,22494011..22494326) /locus_tag="TCM_045122" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:ricco:30170.m014151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045126t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc944t1" CDS join(22492453..22493091,22494011..22494199) /locus_tag="TCM_045122" /note="paralog of Thecc1EG045126t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY19784.1" /db_xref="TAIR:AT4G31500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H4K0" /translation="MAEAILKTHDLDFCSRPRFLGQHKLSYNALDLAFSPYTFYWREI RKICIVYLFNHNRVLPYHPIRESEIARMIEKKSKSSYDLKPINLSELLMYVTSTITCR IAFGKRHDDEGSERSRFHELLNETQAMFGSFFVADCLPFMGWVDRLSGLLDRLKKNFK DFNLFYQKLIDKHLDPYRSKSEHKNIIDVLLQIWKDRVFEVDLTFDHIKAVLMKSCPG IYMGIATVEFALANLLYKFDWEMPVGMNKDDLDFDVIPGVTMHKKNAVCLVARKINV" mobile_element 22495112..22495188 /note="source:scaffold_5_CACTA_0596 6979 7061" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22495130..22495229 /note="source:CACAO_M_E14113_F106_scaffold_3 13806 13911" /mobile_element_type="retrotransposon:LTR/Copia" gene 22503981..22515955 /locus_tag="TCM_045123" /note="dbxref CacaoGD:Thecc1EG045123" mRNA join(22503981..22504904,22505349..22506012, 22511626..22512188,22515053..22515560,22515681..22515955) /locus_tag="TCM_045123" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s25740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045126t1" /inference="similar to AA sequence:ricco:30170.m014153" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage" CDS join(22504029..22504904,22505349..22506002) /locus_tag="TCM_045123" /note="dbxref ricco:30170.m014153; paralog of Thecc1EG045126t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY19785.1" /db_xref="TAIR:AT4G31500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H4K0" /translation="MGLLLFFVILALPILILFFLRKHRHKPPGPLGLPFIGNLLQLTS SPAPHIYLWKLSQKYGPLMRLQLGLRPTLVFSSAKMAKAILQTHDLDFCSRPRFLGQH KLSYNALDLAFSPYNSYWREIRKICIVHLFNRNRVLLYHPIREDEISHMIEKISKSSD DLKPINLSQLLMYVTSTITCRIAFSKRYDDEGNERSRFCGLLNETQAMLGSFFVSDFL PFMSWVDRLSGLLDRLEKNFKDFDRFYQELINEHLDPNRSKPKQEDIIDVLLQIRKDR AFQVDLTFDHIKAVLMTKSITLCNFFPFMQNMFVGGTDTSAVMVIWAMTFLLKNPRSM KKVQEEVRNLIGNNGFVNADDIQGLPYLKAVIKETFRLQPAAPLLLSRETIRKCDIGG HEIPAKTLVIVNAWAIGRDPEARENPKEFYPARFIGSSIDYKGLDFELIPFGAGRRGC PGLHMGIATVELALANLLYKFDWEMPVGMNKDDLDFDVIPGVVMHKKNALCLVARKIN I" mobile_element 22507632..22508776 /note="source:scaffold_9_CACTA_0924 4914 6155" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22510207..22513178 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3510 6459" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22515046..22515949) /locus_tag="TCM_045124" /note="dbxref CacaoGD:Thecc1EG045124" mRNA complement(join(22515046..22515373,22515679..22515949)) /locus_tag="TCM_045124" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" CDS complement(join(22515266..22515373,22515679..22515900)) /locus_tag="TCM_045124" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19786.1" /translation="MQFHFLHSSHSASSVVSGRLSKLKRQNANHLVFSSTSKYLRKNK TRGNDDDFDDLLESKDLDSNHHFQLRTNLPVRVKGSSLVSSRGIVEKRSKSADKDLPG VGVSAWW" mobile_element complement(22519510..22522100) /note="source:CACAO_M_E70097_F74_scaffold_10 1 2591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22523240..22523331) /note="source:CACAO_M_E14113_F106_scaffold_3 13798 13880" /mobile_element_type="retrotransposon:LTR/Copia" gene 22523491..22525975 /locus_tag="TCM_045126" /note="dbxref CacaoGD:Thecc1EG045126" mRNA join(22523491..22524607,22525101..22525975) /locus_tag="TCM_045126" /product="Cytochrome P450" /inference="alignment:exonerate- protein:2:ricco:30170.m014153.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045123t1" /inference="similar to AA sequence:ricco:30170.m014153" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc890t2" CDS join(22523717..22524607,22525101..22525718) /locus_tag="TCM_045126" /note="dbxref ricco:30170.m014153; paralog of Thecc1EG045123t1" /codon_start=1 /product="Cytochrome P450" /protein_id="EOY19787.1" /db_xref="TAIR:AT4G31500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GQY5" /translation="MQKFTMGLLPFFVILALPILVLFFLRKHKRNPPGPLGLPLIGNL LQLASSPAPHIYLWKLSQKYGSLMSLQLGLRPTLVFSSAKMAKTILKTHDLDFCSRPR FLGQYKLSYNALDLAFSPYNSYWREIRKICVVHLFNLNRVLFYRPIREDEIARMIKKI SKSSYDLKPINLSELLMYVTSTITCRIAFGKRYDDEDSERSRFHGLLNETQAMFGSFF VADYFPFMGWVDRLSGLHGRLEKNFKDFDIFYQELINDHLDPNRPKSEQEDIIDVLLQ IWKDRVFQVDLTFDHIKAVLMNMFVAGTDTSAATVIWAMTFLLKNPRSMKKVQEEVRN LIGNNDFVNEDDIQDLPYLKAVIKETFRLQPIAPLLLPRETIRKCDIDGYEIPAQTLV FVNAWAIGKDPEAWENPNEFYPERFIGSSIDYKGLDFELIPFGAGRRGCPGIHMGIAT VELALANLLCKFDWEMPAGMNKDDLDFDVIPGLAMHKKNALCLVARKINILI" mobile_element 22526973..22528519 /note="source:INTACT458_F219_scaffold_7-int 14984 16491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22527826..22529238 /note="source:INTACT641_F282_scaffold_1-int 5382 6757" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22529145..22529325) /note="source:INTACT556_F252_scaffold_2-int 768 868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22529946..22530546 /note="source:INTACT61_F128_scaffold_2-int 2840 3585" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22530334..22535161) /note="source:INTACT157_F155_scaffold_1-int 6262 11083" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22533797..22536993) /locus_tag="TCM_045127" /note="dbxref CacaoGD:Thecc1EG045127" mRNA complement(join(22533797..22534521,22535880..22536528, 22536694..22536993)) /locus_tag="TCM_045127" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012550t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(join(22533986..22534521,22535880..22536153)) /locus_tag="TCM_045127" /note="paralog of Thecc1EG012550t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19788.1" /translation="MKGMDELNMQMIQLKSSISKMGPLGPTPPPNSGLPLSTYFQPAL FRLTFQPMNIGLRPSLHPCPSTFQPPSQQALRAQLFTPSPITPAPSLGEMIENAIKKG KIKDNSVSSMENCNASKKMRGEARVITCEEQPWGINPYHLHSAYQPSCPTRNHISHNL CLYQSILQPIFHLRAPTPSLMPQSSPKPNLRQLPMLILKLLPILIENRYLSLVPMKTV PNPSTRNNDPNAKCDYHMGAIGHSTEKCTQLKEKIENLIKDDSLTLELIER" mobile_element complement(22535833..22539243) /note="source:INTACT157_F155_scaffold_1-int 1234 5040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22538392..22539802 /note="source:INTACT641_F282_scaffold_1-int 5382 6757" /mobile_element_type="retrotransposon:LTR/Copia" gene 22539591..22549648 /locus_tag="TCM_045129" /note="dbxref CacaoGD:Thecc1EG045129" mRNA join(22539591..22539840,22540846..22541032, 22545649..22545892,22546034..22546243,22547388..22547578, 22547688..22549648) /locus_tag="TCM_045129" /product="Disease resistance RPM1-like protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037476001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045130t1" /inference="similar to AA sequence:ricco:27904.m000211" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" mobile_element complement(22539731..22539889) /note="source:INTACT157_F155_scaffold_1-int 15290 15392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22540096..22540270 /note="source:INTACT554_F250_scaffold_7-int 17458 17641" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(22545652..22545892,22546034..22546243, 22547388..22547578,22547688..22548881) /locus_tag="TCM_045129" /note="dbxref ricco:27904.m000211; paralog of Thecc1EG045130t1" /codon_start=1 /product="Disease resistance RPM1-like protein" /protein_id="EOY19789.1" /db_xref="TAIR:AT3G07040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T1X5" /translation="MFVGGIDTSAAIVIWGMTFLLKDPKSMKRVQEEIRNLIGDNAFV NNDDIQDLSYLKIVIKKKFRLQSTAPLLLSQEIIRKGLDFELMPFGAPRRGCPGIYME IATMELALANLLCKFDWEMPVGMNKDDLDFNVIPGVVMHKKRNALCLVGHKFTWPELV RKNGQVAKSTIEKDNPEVTVRILPPGRGGFSDFVAIVFMFSLTITAMLSMSLLLILPG VHGFLALNLVQFILTMPKHLKSCFLYLGMFPEDYAVNCARLVRLWIAEGFVKQRDGAT LEEVAREYLTELIHRNLVQAELVDYDGVVRNCRVHDLMHEVILSKADELNLIQTSAKN IQCPNQTARYLSIKDESNNVSRSGGCSKTHSIIFFEVNEFPKSLLSSLFVNFILLKEL DFEGVPLNYLPEELGNLLHLKYLSVRDTKVKMLLKSLAKLRNLGTLDLKRSLVRELPV EINKLSNLQHLIAYSEDYDTPQGLKIRGTLRSLNSLEKLYYVDMNAQNNFGFIRELGS LKHLRKLGITNLKSEGGNALCNAIEHMSYLESLDVISVKENELLQLQSMSSLPLLLYC LRLQGRLEKLPDWISELKCLVRIRLFWSQLSDIPLKQRNKNITLT" gene complement(22548959..22552993) /locus_tag="TCM_045130" /note="dbxref CacaoGD:Thecc1EG045130" mRNA complement(join(22548959..22549932,22550031..22550049, 22550134..22552993)) /locus_tag="TCM_045130" /product="Cc-nbs-lrr resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s16850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045129t1" /inference="similar to AA sequence:ricco:27904.m000211" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc532t3" CDS complement(join(22549901..22549932,22550031..22550049, 22550134..22552845)) /locus_tag="TCM_045130" /note="dbxref ricco:27904.m000211; paralog of Thecc1EG045129t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative" /protein_id="EOY19790.1" /db_xref="TAIR:AT3G07040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N5N3" /translation="MAEVAVSLVLERLIPLLNQEVKLLRGVHREVEDIKVELEFISSF LRDADAKAAKEDDNNGLRTWVKHTREAAFRIEDAIDEYILHVGKRHHQHRFKAFLRKI DCRVKSMRKRHEIASEIQDIKTSVREIRERSERYSFNTFASGGAAENKTWHDPRMGLH FVENDALVGIDSLKTELVSKLMHGESHRTVISLVGMGGVGKTTLAKKVLDEQIDTGHF DCHAWITVSQSYKVEELLKTMIRRFYESRKESYPSEVNAMDGNELISKSREYLRDKRY FVVFDDIWKEDFWGDVEYALFGNDRSSRIMLTTRSRNAADFCKRSSLVDVLELRPLPL ELAQELLCRIAFQFDEDKQCPLELKELSFDIAKRCEGLPLAIVAIGGLLSSKGRDVGE WQGLHDSLQSQLESNIHLTRIKKILSFSYHDLPYHLKSCFLYLGMFPEDYVVNCARLV RLWIAEGFVKQRDGATLEDAAREYLTELIRRNLVQAEWVDFDGVVRDCRVHDLMHEVI LSKSDELSLIQTSAKNLQCPNQTARHLSIRDESNNLSRSSGCSKTHSIIFFEVNEFPK SLLSSLFANFILLKELDFEGVPLNYLPEELGNLLHLKYLSVRDTKVKMLPKSLAKLRN LGTLDLKRSLVRELPVEINKLSNLQHLLAYSEDYDTRQGVKIRGTLRSLNSLEKLYYV DMNAQNNFGFIRELGSLKHLRKLGITNLKSEAGNALCNAIEHMSYLESLHVISVKENE LLQLQSMSSPPLLLNCLRLQGRLEKLPDWISELKCLVRIRLFWSQLSDIPLKMLGGLP KLLELALYKGYNGEQLHFEDGYFPVLKELTLEGMDRFNRLIIDEKALCLVEMLWIESC PRLEELPSGICHMKCLKYLEISDMSKEFARRMLPDVGQDHWKVQHIPNKSSETTGGAC LLIQDG" gene 22553689..22559620 /locus_tag="TCM_045131" /note="dbxref CacaoGD:Thecc1EG045131" mRNA join(22553689..22553851,22554407..22554683, 22554905..22555073,22555633..22555782,22556493..22557668, 22558226..22558372,22558540..22559620) /locus_tag="TCM_045131" /product="10-formyltetrahydrofolate synthetase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s04800.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s04800.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03635t00001" CDS join(22554505..22554683,22554905..22555073, 22555633..22555782,22556493..22557668,22558226..22558372, 22558540..22558815) /locus_tag="TCM_045131" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="10-formyltetrahydrofolate synthetase isoform 1" /protein_id="EOY19791.1" /db_xref="Phytozome:POPTR_0001s04800.1" /db_xref="TAIR:AT1G50480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6UB35" /translation="MNAKFSAGFFTVSGPNVDACYAKFTASSVTVNLHPLPHKKNGTS KTNQTSIMHHSHDIAQKRKMSSRSVRKLEVVSPVPADIDIANSVEPFHISEIAKDLNL SSNHYDLYGKYKAKVLLSVLDELQGSEDGYYVVVGGITPTPLGEGKSTTTVGLCQALG AFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLL AAAIDTRIFHESSQSDKALFNRLCPPNKDGKRKFSDIMFRRLKKLGISKTHPEDLTPE EVKKFSRLDIDPNSITWRRVMDVNDRFLRKITVGQGPEEKGMVRETGFDISVASEIMA VLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEG TPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRY SGLIPQCAIIVATIRALKMHGGGPEVVAGKPLDHAYVNENVSLVEAGCVNLARHIANT KAYGVNVVVAVNKFSTDTEAEMNAVRNAALAAGAFDAVICTHHAHGGKGAVDLGVAVQ RACENVTQPLRFLYPLDISIKEKIEAIARSYGASGVEYTEQAEKQIEMCSRQGFSGLP ICMAKTQYSFSHIASEKGAPSGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCF YEIDLDTTTGKVIGLS" mRNA join(22554705..22555073,22555633..22555782, 22556493..22557669,22558072..22558080,22558239..22558372, 22558540..22559338) /locus_tag="TCM_045131" /product="10-formyltetrahydrofolate synthetase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s04800.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s04800.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc334t3; inference alignment:Newbler:10:TSA:cgbaB_g03635t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc366t2" CDS join(22554915..22555073,22555633..22555782, 22556493..22557669,22558072..22558080,22558239..22558372, 22558540..22558815) /locus_tag="TCM_045131" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="10-formyltetrahydrofolate synthetase isoform 2" /protein_id="EOY19792.1" /db_xref="Phytozome:POPTR_0001s04800.1" /db_xref="TAIR:AT1G50480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6UB35" /translation="MSSRSVRKLEVVSPVPADIDIANSVEPFHISEIAKDLNLSSNHY DLYGKYKAKVLLSVLDELQGSEDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK KVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAID TRIFHESSQSDKALFNRLCPPNKDGKRKFSDIMFRRLKKLGISKTHPEDLTPEEVKKF SRLDIDPNSITWRRVMDVNDRFLRKITVGQGPEEKGMVRETGFDISVASEIMAVLALT TSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLV HAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSGLIP QCAIIVATIRALKMHGGGPEVVAGKPLDHAYVNENVSLVEAGCVNLARHIANTKAYGV NVVVAVNKFSTDTEAEMNAVRNAALAAGAFDAVICTHHAHGGKGAGTLVAVQRACENV TQPLRFLYPLDISIKEKIEAIARSYGASGVEYTEQAEKQIEMCSRQGFSGLPICMAKT QYSFSHIASEKGAPSGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDLD TTTGKVIGLS" gene complement(22559624..22561278) /locus_tag="TCM_045132" /note="dbxref CacaoGD:Thecc1EG045132" mRNA complement(join(22559624..22559861,22559962..22560095, 22560339..22560545,22560989..22561152,22561249..22561278)) /locus_tag="TCM_045132" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc15093t2_C1" CDS complement(join(22559966..22560095,22560339..22560391)) /locus_tag="TCM_045132" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19793.1" /translation="MQVLFLYACILVDFALSSLPVALTCGFTTLNSRFAMVILRTSLL RTNKRFTSRPILWSTL" gene complement(22561325..22562538) /locus_tag="TCM_045133" /note="dbxref CacaoGD:Thecc1EG045133" mRNA complement(join(22561325..22561518,22561801..22561889, 22562448..22562538)) /locus_tag="TCM_045133" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc1228t2" CDS complement(join(22561500..22561518,22561801..22561889, 22562448..22562513)) /locus_tag="TCM_045133" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19794.1" /translation="MLMNHETNGREGIEVSKRREKAMFGILSSMRHISFRLLVKHFLQ YHPKKGFRGSRQQ" gene complement(22562586..22570148) /locus_tag="TCM_045134" /note="dbxref CacaoGD:Thecc1EG045134" mRNA complement(join(22562586..22562610,22562707..22563014, 22564188..22564326,22564505..22564832,22565163..22565239, 22565582..22570148)) /locus_tag="TCM_045134" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045149t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s20690.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8112t24" CDS complement(22565621..22570021) /locus_tag="TCM_045134" /note="paralog of Thecc1EG045149t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY19795.1" /db_xref="Phytozome:POPTR_0004s20690.1" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2Y0Z9" /translation="MSFFDALSAIGEVVVSKFFDFLIDKLVSSDLLQFATEKKIHEGM EKLKRELLEIRAVLDDAEERQLKDKFVKIWLFDLQILAYDVDDVLDELATEISRRNLM MERRGSSSKKPRLMITDPLDAVNAVNFYRDMMSKINDVTVRLKALEPERKKLQKRMKD CHRSKRIEERLQPTSVEIETHVYGRDKDKEKILELLFESDDEGKVVIPIVGMGGIGKT TLARLVYNDNRVNDYFDLKAWVCVSENFDITDITKSILLSVASESYNAQDDLNKLQTK LKEKLSGKKLLLILDDLWQQIYNDWTILVAPFGKGTTIIVTTRDQSVSRMTRTIPDDY KLQKLPDEDCLSVLTGHAFQAKDFSGHPHLKEIGVKMAEKCRGLPLAAKTIGGLLRNE VGLVVWKDILENEVWKEEGCNIIPALRLSYHHLPPHLKPCFAYCAIIPNDYEFSETEI VRLWMAEGLLRVKAVKQNEDLGQEIFQELVSRSFFERSSQNKSRYVMHDLINDLAQSI AKDLCFRVEGDKELDISNNARHSSYIGGRRDGIKKFRVFNGMERLRTFLPLKMPDKGD CYISNQVLFDLLPKLKCLRVLSLEGYHLTKLLDVFGDLIHLRYLNFSHTPIKTLPDSI CKLYNLETLILWGCKALEEFPLEMRDLINLRHLDFTGANSQIRMPMGIGELTSLQTLT RFVVSQDNGLQIQEMGNLSNLKGELIISGLENIVKAQDALVAGLCNKSNIYDLTLEWH FQVVFPVEETQIHKDVLNSLRPHTMLERLTIQHYGGKAFPNWIGDPSFEKLSHLELDN CPNCTSLPAIGKLPLLKSLFIKNMNKVTVVGSNFFGENASIAFPKLEELFFYNMPEWK EWDPCEVDGDVFQQLRLLSISDCPKLLGSLPTRLRSLEKLVILRCQKLRSLATCPPSL KKLEVRECEQLVVSLSSLTKLCKLKIEECQEVVGTSFTNFGSLMKSVSLSNISKFTCP RDLMLGLRKAESLSIGKCEELISSWQNQERCSAYPSALRFLKIQNCSQLASIGVEDEK EEQMQLGIPRNIVDLGISDCERLERLSKSLHSYTSLTMLQIERCPRLISFSKGNLPAN LRSLTIRCCENLQYLLDERENVSINGTFFLENLDICNCKSFISLSARRELSLRFVSLS IFDCWNLQYLLDEKDKINIEQLTIGNCQSLISLSAKGELPVDLQRVTIYSCREKLACL LSNGKLPKGLKRLHIELCPSLESIAPEIEDNSSLEQILIFFCQNFRSLPRGSDKLNHL ENIYIVNCPNLISFQGNGLLTPNLKKLHLQWCEKLEALPNTVSLEEFYIDKCPSVVSL PEEGFPTNLISLTISQPNFCKSVIEWGLHKLTSLKHFCIHGASLDVASFPYEEMLLPP SLTSFSIKHFPNLEILSSKGFQNLTSLESLCIEDCPKLKFLPSKEMLPSLLTLEIRGC PLLKQRCKKDEGPEWPNIAHVPYIRMPSKT" gene complement(22569108..22613785) /locus_tag="TCM_045136" /note="dbxref CacaoGD:Thecc1EG045136" mRNA complement(join(22569108..22569136,22613096..22613368, 22613391..22613785)) /locus_tag="TCM_045136" /product="Disease resistance protein RPS2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045149t1" /inference="similar to AA sequence:ricco:30063.m001411" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7599t3" gene complement(22578857..22603790) /locus_tag="TCM_045137" /note="dbxref CacaoGD:Thecc1EG045137" mRNA complement(join(22578857..22578913,22580260..22580447, 22586177..22586331,22587237..22587322,22597055..22597101, 22599100..22601371,22601470..22603790)) /locus_tag="TCM_045137" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400034187" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045134t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s20690.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.20 coverage" gene 22580485..22595358 /locus_tag="TCM_045138" /note="dbxref CacaoGD:Thecc1EG045138" mRNA join(22580485..22581203,22582415..22582605, 22589009..22589466,22595327..22595358) /locus_tag="TCM_045138" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028765t1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(22581041..22581203,22582415..22582605, 22589009..22589326) /locus_tag="TCM_045138" /note="paralog of Thecc1EG028765t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19798.1" /translation="MAGIGFMSQLSIIKQHVNKLMELLNENGICSTNGKVSSQNTQQE SHSLVNSTFAERNWIKEPSNSHVIGCKWVYKVKLNANGTVERYKAQLVAKGYNQVAGL DYQETFSPVAKHTTVRKQPVVARSSAEAKYRCMASTCCEVVWLKHLLSDFGIECIDVV ILYSDSQSAIHINKNPVFHERTKHIELDCHFIKKKVLEGIIKPMYMSTNLQLADMFTK ALTPR" mobile_element 22583518..22585656 /note="source:CACAO_M_E71704_F244_scaffold_10 1 2148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22585636..22585712 /note="source:CACAO_M_E22484_F328_scaffold_3 4801 4880" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22585813..22586672) /note="source:CACAO_M_E49108_F15_scaffold_6 2129 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22586773..22588206) /note="source:CACAO_M_E49110_F15_scaffold_6 672 2107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22588307..22589007) /note="source:scaffold_4_CACTA_0503 3237 3937" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22588673..22589047 /note="source:CACAO_M_E43916_F9_scaffold_5 9542 9912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22592837..22592903 /note="source:INTACT296_F13_scaffold_9-int 13168 13234" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22597318..22599739) /locus_tag="TCM_045140" /note="dbxref CacaoGD:Thecc1EG045140" mRNA complement(join(22597318..22597404,22597692..22597781, 22598222..22598310,22598393..22598550,22599100..22599241, 22599308..22599739)) /locus_tag="TCM_045140" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045137t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08190t00001" CDS complement(join(22599123..22601371,22601470..22603525)) /locus_tag="TCM_045137" /note="paralog of Thecc1EG045134t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY19797.1" /db_xref="Phytozome:POPTR_0004s20690.1" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVE6" /translation="MSFFDALSAIREVVVSKVFDFLIDKLVSSDFLQFATEEKIHLEV EKLRTELLEIRAVLDDAEERQLKDESVKIWLSNLQNLAYDVDDILDEIATDISMRNLM MERRGSSSKKPRLMISDSYNAVMFNRDMMSKINDVTARLKDLEPQTKKLQKRTRDYRR SKRIEERPQPTSVEIETHVYGRDKDKETILELLFKSDDERNFVIPIVGMGGVGKTTLA QLVYNDASIQNHFDLKAWVCVSDDFDVTRITKAILESVGSVSGNGNELTSLQEKLKNA LSEKIFLIVLDDVWNEDYNKWTILQSPFLKRTPGSKIIVTTRNLVVSNTMGASHAQFL ELLSEDDCLSIFAQHALGATNFRKHPNLKAVAEKIVRKCNGLPLAAKTIGGLLRTNVE HDAWKNILESEIWQLSEHQCGIIPALQLSYHHLPPHLRRCFAYCSIFPKDYEFEEEEI ILLWKAEGFLQEARDRQRVEDLGHQYFRNLLSRSLLQISSKDNSRFVMHDLIHDLAQS VAGEICFRIEGDKQISKQARHLSYVADECDGIKKFEGVWEAKYLRTFLPLRLSSYGNG FVTSNVLTCLLPGLRFLRVLSLKGYKIEVLPDFIGDLKHLRHLDISRTFIRSLPESIS TLYNLETLLLRRCEHLVKLPSEMENLVNLCHLDITDAIRLQGMPSNFGTLTNLQTLSN FVVDACGAKLQEKMGLDGLELKWCSCFGNATEEVEKKVLDSLRPSKKLKKLTIMGYCG DTLAKWVGDSSFNNLLSLSLINCLNCMSLPSIGKLPLLKEVCIQGLHNVTSVGLEFLG ENTPNAFSSLEILRFGYMLNWENWEVDDEAMKFSKLRELHICYCSELLGSIPESLPAL EKLVIKSCEKLEISISSFPKLSELEIDECEKVVYKGFADHSSLQKVFFSNIPKFTCTR ECLRLGSIRVESLKILRCEELLSSRENNWGLLTQSMSLGNLTIRGCAQLLSIGVEGER EELMQLKIPYSIEHMVVEDCEKLEKISTTLQSFTSLRVLVLESCPKLISLSKSNLPLS LNRLRIWFCHNLRCLWDEGENINIDSAFLLEHLNILGCSSLVSLSSRGQLPRGLKELQ IEYCPKLESIAQEIQQNAALECILISDCDKINYLPQGLNRLCHLQKINIECTNLVSFP EIGLPATNLKVLYLSNCTNLQDLPHGIYNLNCLEDLRIRNCPSLTSFPEEGIPTTLKS LHIEGPNIYKLLTEWGLHKLTSLKSLSIKNGCPDAVSFPQVEIGMMLPCSLTTLEICD FPKLEILSSNGFQNLTSLESLVVKDCPNLKSLPEKGKLSSLLMLDISRCAVLRERCEK DKGPEWSKIAHIPCFHYESDDASEYDDSGDGYYSEDAFGSDDDASEYYDSGDGYYSED ASGSDDDASEHYEAGDGSNSEDCDLGDDYNSEDDSGSDDYDSQDGASENNSAEQQN" CDS complement(join(22599123..22599241,22599308..22599683)) /locus_tag="TCM_045140" /note="paralog of Thecc1EG045137t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19799.1" /translation="MMLPCSLTTLEICDFPKLEILSSNGFQNLTSLESLVVKDCPNLK SLPEKGKLSSLLMLDISRCAVLRERCEKDKGPEWSKIAHIPCFHYESDDASEYDDSGD GYYSEDAFGSDDDASEYYDSGDGSNSEDCDLGDDYNSEDDSGSDDYDSQDGASENNSA EQQN" gene complement(22604384..22607825) /locus_tag="TCM_045141" /note="dbxref CacaoGD:Thecc1EG045141" mRNA complement(join(22604384..22604831,22604905..22604929, 22605317..22605670,22606014..22606021,22606208..22606227, 22606854..22606942,22607071..22607165,22607291..22607408, 22607706..22607825)) /locus_tag="TCM_045141" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc687t9" CDS complement(join(22605594..22605670,22606014..22606021, 22606208..22606227,22606854..22606942,22607071..22607092)) /locus_tag="TCM_045141" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19800.1" /translation="MIVANLAGIQLSWICENENCLMPLKEKEQNERMHLLMACLESKS VDGLSEGVELKLLDLHIDLAFWPMKRL" gene complement(<22608285..22609502) /locus_tag="TCM_045143" /note="dbxref CacaoGD:Thecc1EG045143" mRNA complement(join(<22608285..22608298,22608416..22608552, 22609325..22609502)) /locus_tag="TCM_045143" /product="Uncharacterized protein" /note="quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1269t1" CDS complement(join(<22608285..22608298,22608416..22608536)) /locus_tag="TCM_045143" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19801.1" /translation="MTMVVNIGAYGGDFGDSPNDLNFYLNGLTWPGQTPHPSLHEVKH V" gene 22609521..22610145 /locus_tag="TCM_045144" /note="dbxref CacaoGD:Thecc1EG045144" mRNA 22609521..22610145 /locus_tag="TCM_045144" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001469001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02807t00002" CDS 22609636..22610109 /locus_tag="TCM_045144" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19802.1" /translation="MMVKEVREGGRSISSQGNDATSREAPLMEKCLREVSLCKPHSIT DLQIMGCKIASEMRLVGSPSSGKDTTLAHLNIKNSSRETMLCMQLGKASSFSHLERWS FLSLGVNNPLPGKDIRFGQLPIKISSRWLSLSNPCGKDLKFSQRLIIICSREELS" CDS complement(join(22613330..22613368,22613391..22613729)) /locus_tag="TCM_045136" /note="dbxref ricco:30063.m001411; paralog of Thecc1EG045149t1" /codon_start=1 /product="Disease resistance protein RPS2" /protein_id="EOY19796.1" /translation="MSVIGEAALAAFFEVLFSKLASAEFLNAVTEKQVGQELKKWKKI LPCIQAVLDDAEEKHMKDGHVKRWLAELQDLAYDADDVLDEFATEALRRKLTREHQDS SSKLQKLLPTCIIPHLIMKLCTR" mobile_element 22617583..22618140 /note="source:INTACT38_F18_scaffold_9-int 1 560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22617640..22619864) /note="source:CACAO_M_E44079_F19_scaffold_5 807 3055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22619799..22620879) /note="source:scaffold_2_CACTA_0267 369 1448" /mobile_element_type="transposon:TIR/CACTA" gene 22625420..22626038 /locus_tag="TCM_045146" /note="dbxref CacaoGD:Thecc1EG045146" mRNA join(22625420..22625451,22625531..22625681, 22625831..22626038) /locus_tag="TCM_045146" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6344t2" CDS join(22625548..22625681,22625831..22625918) /locus_tag="TCM_045146" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19803.1" /translation="MGRECFTNNLKEICFIDDGNANHQFITMRRCILSLCSFFFQWLN LVNIVSQIMQPPKVPTNSNISLFPFPISI" gene complement(22628024..22634328) /locus_tag="TCM_045149" /note="dbxref CacaoGD:Thecc1EG045149" mRNA complement(join(22628024..22628248,22628427..22628753, 22629082..22629158,22629483..22634328)) /locus_tag="TCM_045149" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s20690.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045134t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s20690.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6340t10" CDS complement(22629540..22633925) /locus_tag="TCM_045149" /note="paralog of Thecc1EG045134t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY19804.1" /db_xref="Phytozome:POPTR_0004s20690.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2Y0Z9" /translation="MSMSVIGEAALAAFFEALFSKLAEFLNVVTEKQVREELHEWENI LLSIQAVLDDAEEKHVKNRHVKRWLTELQHLAYDAGDVLDEFATEALRRKLTREHQDS SSKLQKLRHTCFSHNFSSNSEMMSMIKEITTRFQKLADRRSALALTENVGGRPKRAIE RPPTTSLVTETQVYGRANDKEAIFQLISDRNVAEICVIPIVGMGGIGKTTLAQLVYND NQVNDYFDLKAWVCVSEIFDIKDITKSILSSIGHESPDAGADLNNLQIKLKQRLSGKR LLLILDDLWHQIYNDWTLLIAPFGKGTTIIVTTREQSVSSMTRTIPADHKLQKLSDED CLSVLTHHALGAKDFSRHPNLEEIGRKIVKKCNGLPLAAKTIGGLLRNKVDLDAWKDI LENEIWNLPEDRSNIIPALRISYHHLPPCLKRCFAYCAILPKDYEFTEMEIVWLWMAE GFLQVEAVKQNEDLGKEIFQELVSRSFFEISSQDKSRYVMHDLINDLAQSITKEICFR VKGDKKLNISKHARHSSYIGGRRDGIKKFQVFYGTERLRTFLPLKMPNQMYCYISNNV LSNLLSKLKCLRVLSLERYQLTELPDVFGDLIHLRYLNFSYTPIETLPDSICKLYNLE TLILQECSRLKEFPSKMRDLINLRHLDFTGANSQIRMPMGIGELTSLQTLTRFVVSRD NGLQIQEMEKLSNLKGGLLISGLENIVKAQDAAVAGLCNKSNLSDLTLEWKYSRDAFA VEEIQFHMDVLNSLRPHAMLERLTIQHYGGKAFPNWIGDPSFEKLSHLELDNCPNCTS LPAIGKVPLLKSLFIKNMNKVTVVGSNFFGENASIAFPKLEELFFYNMPEWQEWDPCE VDGDVFQQLRLLSISDCPKLLGSLPTRLRSLEELVILRCQKLRSLATCPPSLKKLEVR ECEQLVVSLSSLTKLCKLKIEECQEVVGTSFTNFGSLMKSVSLSNISKFTCPRDLMLG LRKAESLSIRKCEELISSWQNQEGCSAYPSALRFLKIQNCSQLASIGVEDEKEEQMQL EIPRNIVDLGISDCERLERLSKSLHSYTSLTVLQIERCPRLISFSKGNLPANLRSLTI RCCENLQYLLDERENVSINGTFFLEKLEIRDCKTFISLSARRELQLKFISLSIIDCEN LQYLLDERENISIEQLTIGFCQSLISLSARGDLPVDLQRVTIYGCEKKLASLLSNGKL PEGLKYLSIEDCPSLESIAPEIEDNSSLKQIDIEFCENFRSLPRGFDNLNHLEEVFIG DCPNLISFPGSGLLTPKLREFYLMSCEKLEALPNRMHNIVSLEEFYIDDCASVVSLPE GGFPTNLISLTISQPNFCKSVIEWGLHKLTSLKHFCIHGASLDVASFPHEEMLLPPSL TSFSIRDFPNLEILSSKGFQNLTSLESLEILNCLKLKFLPSKEMLPSLLTLNIRGCPL LKQRCKKDEGPEWHNIAHVPHIAIQ" gene complement(22634247..22647570) /locus_tag="TCM_045150" /note="dbxref CacaoGD:Thecc1EG045150" mRNA complement(join(22634247..22635396,22636004..22636693, 22637323..22637445,22637542..22637841,22637928..22637983, 22638098..22638233,22639041..22639149,22639305..22639464, 22639965..22640268,22640381..22640587,22640937..22641176, 22642079..22642144,22643017..22643200,22643966..22644044, 22644748..22644894,22645681..22645920,22646812..22647090)) /locus_tag="TCM_045150" /product="Glycoside hydrolase family 2 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19590.1" /inference="similar to AA sequence:ricco:30131.m007196" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7584t9" mRNA complement(join(22634666..22635396,22636004..22636693, 22637323..22637445,22637542..22637841,22637928..22637983, 22638098..22638233,22639041..22639149,22639305..22639464, 22639965..22640268,22640387..22640587,22640937..22641176, 22642079..22642144,22643017..22643200,22643966..22644044, 22644748..22644894,22645681..22645920,22646812..22647570)) /locus_tag="TCM_045150" /product="Glycoside hydrolase family 2 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19590.1" /inference="similar to AA sequence:ricco:30131.m007196" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc272t4; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7584t9" mRNA complement(join(22634666..22635396,22636004..22636693, 22637323..22637445,22637542..22637841,22637928..22637983, 22638098..22638233,22639041..22639149,22639305..22639464, 22639965..22640268,22640381..22640587,22640937..22641176, 22642079..22642144,22643017..22643205,22643966..22643995)) /locus_tag="TCM_045150" /product="Glycoside hydrolase family 2 protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19590.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19590.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc272t3; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7584t9" mRNA complement(join(22634666..22635396,22636004..22636693, 22637323..22637445,22637542..22637841,22637928..22637983, 22638098..22638233,22639041..22639149,22639305..22639464, 22639965..22640268,22640381..22640587,22640937..22641176, 22642079..22642144,22642270..22642616)) /locus_tag="TCM_045150" /product="Glycoside hydrolase family 2 protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19590.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19590.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc281t6; alternateUTRof:Thecc1EG045150t3; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7584t9" CDS complement(join(22635226..22635396,22636004..22636693, 22637323..22637445,22637542..22637841,22637928..22637983, 22638098..22638233,22639041..22639149,22639305..22639464, 22639965..22640268,22640387..22640587,22640937..22641176, 22642079..22642144,22643017..22643200,22643966..22644044, 22644748..22644894,22645681..22645920,22646812..22646944)) /locus_tag="TCM_045150" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m007196" /codon_start=1 /product="Glycoside hydrolase family 2 protein isoform 2" /protein_id="EOY19806.1" /db_xref="TAIR:AT3G54440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JCX1" /translation="MASLIVGQLVFPSENGYKVWEDQSFFKWRKRDPHVTLHCHESVE GSLRYWYERNKVDLSVSNTAVWNDDAVQKALDSAAFWVNGLPFVKSLSGYWKFFLASN PNAVPKNFYESAFQDSDWETLPVPSNWQMHGFDRPIYTNVVYPIPLDPPHVPIDNPTG CYRTYFHIPEQWQGRRILLHFEAVDSAFCAWINGIPVGYSQDSRLPAEFEITEYCYSC DSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLSKPQVFIADYFFKSSLAYN FSYADIQVEVKIDCSREMSKDKVLTDFTIEAALFDAGVWYNHDGNVDLLSSNVANIVL KTVPTGTLGFHGYVLVGKLEKPKLWSAEQPNLYTLVIILKDASGNVVDCESCLVGVRQ VSKAPKQLLVNGHPVVIRGVNRHEHHPRLGKTNIESCMDLVVMKQNNINAVRNSHYPQ HPRWYELCDLFGIYMIDEANIETHGFDLSGHVKHLTQEPGWAAAMMDRVIGMVERDKN HACIFSWSLGNESGYGPNHSASAGWIRGRDPSRLVHYEGGGSRTSSTDIICPMYMRVW DIVKIAKDPNETRPLILCEYSHAMGNSNGNIHEYWEAIDNIFGLQGGFIWDWVDQGLL KDNEDGSKYWAYGGDFGDSPNDLNFCLNGLTWPDRTPHPALQEVKYVYQPIKVSIGES MIKIKNTNFYETTEGVELKWAARGDGCELGCGILSLPVIEPQSSYDIEWKSGPWYPLW ASSDAEEIFLTITAKLLHSKRWVDAGHVVSSTQVQLLAKRDIVPHIIKTKDDVLSTEI LGDNIRISQQKLWEITLNVKTGSLDSWKVQGVSILKNGIIPCFWRAPTDNDKGGGPSS YYSRWKAAHMDDIVFLRESCSIQEKTDHAVKIVVVYLGVSKGENGPLNELEKADALVE IDMLYTIHASGDIIIDSNVKPSSSLPPLPRVGVEFHLEKSVDQVKWYGRGPFECYPDR KAAAQVGVYEQTVDDMHVPYIVPGESGGRADVRWVTFQNKDGYGIYASTYGKSPPMQM NASYYSTTELDRATRNEELIKGDSIEVHLDHKHMGIGGDDSWTPCVHEKYLIPAVPYS FSIRLCPVTAATSGQNIYKSQLQN" CDS complement(join(22635226..22635396,22636004..22636693, 22637323..22637445,22637542..22637841,22637928..22637983, 22638098..22638233,22639041..22639149,22639305..22639464, 22639965..22640268,22640381..22640587,22640937..22641176, 22642079..22642144,22643017..22643200,22643966..22644044, 22644748..22644894,22645681..22645920,22646812..22646944)) /locus_tag="TCM_045150" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m007196" /codon_start=1 /product="Glycoside hydrolase family 2 protein isoform 1" /protein_id="EOY19805.1" /db_xref="TAIR:AT3G54440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JCX1" /translation="MASLIVGQLVFPSENGYKVWEDQSFFKWRKRDPHVTLHCHESVE GSLRYWYERNKVDLSVSNTAVWNDDAVQKALDSAAFWVNGLPFVKSLSGYWKFFLASN PNAVPKNFYESAFQDSDWETLPVPSNWQMHGFDRPIYTNVVYPIPLDPPHVPIDNPTG CYRTYFHIPEQWQGRRILLHFEAVDSAFCAWINGIPVGYSQDSRLPAEFEITEYCYSC DSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLSKPQVFIADYFFKSSLAYN FSYADIQVEVKIDCSREMSKDKVLTDFTIEAALFDAGVWYNHDGNVDLLSSNVANIVL KTVPTGTLGFHGYVLVGKLEKPKLWSAEQPNLYTLVIILKDASGNVVDCESCLVGVRQ VSKAPKQLLVNGHPVVIRGVNRHEHHPRLGKTNIESCMVKDLVVMKQNNINAVRNSHY PQHPRWYELCDLFGIYMIDEANIETHGFDLSGHVKHLTQEPGWAAAMMDRVIGMVERD KNHACIFSWSLGNESGYGPNHSASAGWIRGRDPSRLVHYEGGGSRTSSTDIICPMYMR VWDIVKIAKDPNETRPLILCEYSHAMGNSNGNIHEYWEAIDNIFGLQGGFIWDWVDQG LLKDNEDGSKYWAYGGDFGDSPNDLNFCLNGLTWPDRTPHPALQEVKYVYQPIKVSIG ESMIKIKNTNFYETTEGVELKWAARGDGCELGCGILSLPVIEPQSSYDIEWKSGPWYP LWASSDAEEIFLTITAKLLHSKRWVDAGHVVSSTQVQLLAKRDIVPHIIKTKDDVLST EILGDNIRISQQKLWEITLNVKTGSLDSWKVQGVSILKNGIIPCFWRAPTDNDKGGGP SSYYSRWKAAHMDDIVFLRESCSIQEKTDHAVKIVVVYLGVSKGENGPLNELEKADAL VEIDMLYTIHASGDIIIDSNVKPSSSLPPLPRVGVEFHLEKSVDQVKWYGRGPFECYP DRKAAAQVGVYEQTVDDMHVPYIVPGESGGRADVRWVTFQNKDGYGIYASTYGKSPPM QMNASYYSTTELDRATRNEELIKGDSIEVHLDHKHMGIGGDDSWTPCVHEKYLIPAVP YSFSIRLCPVTAATSGQNIYKSQLQN" CDS complement(join(22635226..22635396,22636004..22636693, 22637323..22637445,22637542..22637841,22637928..22637983, 22638098..22638233,22639041..22639149,22639305..22639464, 22639965..22640268,22640381..22640587,22640937..22641146)) /locus_tag="TCM_045150" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Glycoside hydrolase family 2 protein isoform 3" /protein_id="EOY19807.1" /db_xref="Phytozome:POPTR_0003s19590.1" /db_xref="TAIR:AT3G54440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JCX1" /translation="MSKDKVLTDFTIEAALFDAGVWYNHDGNVDLLSSNVANIVLKTV PTGTLGFHGYVLVGKLEKPKLWSAEQPNLYTLVIILKDASGNVVDCESCLVGVRQVSK APKQLLVNGHPVVIRGVNRHEHHPRLGKTNIESCMVKDLVVMKQNNINAVRNSHYPQH PRWYELCDLFGIYMIDEANIETHGFDLSGHVKHLTQEPGWAAAMMDRVIGMVERDKNH ACIFSWSLGNESGYGPNHSASAGWIRGRDPSRLVHYEGGGSRTSSTDIICPMYMRVWD IVKIAKDPNETRPLILCEYSHAMGNSNGNIHEYWEAIDNIFGLQGGFIWDWVDQGLLK DNEDGSKYWAYGGDFGDSPNDLNFCLNGLTWPDRTPHPALQEVKYVYQPIKVSIGESM IKIKNTNFYETTEGVELKWAARGDGCELGCGILSLPVIEPQSSYDIEWKSGPWYPLWA SSDAEEIFLTITAKLLHSKRWVDAGHVVSSTQVQLLAKRDIVPHIIKTKDDVLSTEIL GDNIRISQQKLWEITLNVKTGSLDSWKVQGVSILKNGIIPCFWRAPTDNDKGGGPSSY YSRWKAAHMDDIVFLRESCSIQEKTDHAVKIVVVYLGVSKGENGPLNELEKADALVEI DMLYTIHASGDIIIDSNVKPSSSLPPLPRVGVEFHLEKSVDQVKWYGRGPFECYPDRK AAAQVGVYEQTVDDMHVPYIVPGESGGRADVRWVTFQNKDGYGIYASTYGKSPPMQMN ASYYSTTELDRATRNEELIKGDSIEVHLDHKHMGIGGDDSWTPCVHEKYLIPAVPYSF SIRLCPVTAATSGQNIYKSQLQN" CDS complement(join(22635226..22635396,22636004..22636693, 22637323..22637445,22637542..22637841,22637928..22637983, 22638098..22638233,22639041..22639149,22639305..22639464, 22639965..22640268,22640381..22640587,22640937..22641146)) /locus_tag="TCM_045150" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Glycoside hydrolase family 2 protein isoform 3" /protein_id="EOY19808.1" /db_xref="Phytozome:POPTR_0003s19590.1" /db_xref="TAIR:AT3G54440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JCX1" /translation="MSKDKVLTDFTIEAALFDAGVWYNHDGNVDLLSSNVANIVLKTV PTGTLGFHGYVLVGKLEKPKLWSAEQPNLYTLVIILKDASGNVVDCESCLVGVRQVSK APKQLLVNGHPVVIRGVNRHEHHPRLGKTNIESCMVKDLVVMKQNNINAVRNSHYPQH PRWYELCDLFGIYMIDEANIETHGFDLSGHVKHLTQEPGWAAAMMDRVIGMVERDKNH ACIFSWSLGNESGYGPNHSASAGWIRGRDPSRLVHYEGGGSRTSSTDIICPMYMRVWD IVKIAKDPNETRPLILCEYSHAMGNSNGNIHEYWEAIDNIFGLQGGFIWDWVDQGLLK DNEDGSKYWAYGGDFGDSPNDLNFCLNGLTWPDRTPHPALQEVKYVYQPIKVSIGESM IKIKNTNFYETTEGVELKWAARGDGCELGCGILSLPVIEPQSSYDIEWKSGPWYPLWA SSDAEEIFLTITAKLLHSKRWVDAGHVVSSTQVQLLAKRDIVPHIIKTKDDVLSTEIL GDNIRISQQKLWEITLNVKTGSLDSWKVQGVSILKNGIIPCFWRAPTDNDKGGGPSSY YSRWKAAHMDDIVFLRESCSIQEKTDHAVKIVVVYLGVSKGENGPLNELEKADALVEI DMLYTIHASGDIIIDSNVKPSSSLPPLPRVGVEFHLEKSVDQVKWYGRGPFECYPDRK AAAQVGVYEQTVDDMHVPYIVPGESGGRADVRWVTFQNKDGYGIYASTYGKSPPMQMN ASYYSTTELDRATRNEELIKGDSIEVHLDHKHMGIGGDDSWTPCVHEKYLIPAVPYSF SIRLCPVTAATSGQNIYKSQLQN" misc_feature complement(join(22642119..22642144,22642270..22642761)) /locus_tag="TCM_045150" /note="Gene fragment of Thecc1EG045150t1; dbxref gnl|CacaoGD|Thecc1EG045150t1; quality class is mediumpartial-partof is thecc1eg045150t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc11428t1; dbxref CacaoGD:Thecc1EG045151t1" gene complement(22643178..22663298) /locus_tag="TCM_045152" /note="dbxref CacaoGD:Thecc1EG045152" mRNA complement(join(22643178..22643205,22643966..22644044, 22644748..22644894,22645681..22645920,22646812..22648286, 22649265..22649379,22649816..22651137,22651228..22651368, 22651480..22651653,22651908..22652182,22653417..22653574, 22655472..22655596,22655710..22655776,22655934..22656109, 22656215..22658101,22658202..22658360,22658957..22659121, 22659359..22659412,22660404..22660516,22660661..22660787, 22661216..22661311,22662434..22662475,22662813..22662909)) /locus_tag="TCM_045152" /product="DNA-directed RNA polymerase E subunit 1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19630.1" /inference="alignment:exonerate- protein:2:ricco:30131.m007197" /inference="similar to AA sequence:Phytozome:GSVIVT01013491001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc281t10; alternateUTRof:Thecc1EG045152t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc281t10" mRNA complement(join(22647138..22648286,22649265..22649379, 22649816..22651137,22651228..22651368,22651480..22651653, 22651908..22652182,22653417..22653574,22655472..22655596, 22655710..22655776,22655934..22656109,22656215..22658101, 22658202..22658360,22658957..22659121,22659359..22659412, 22660404..22660516,22660661..22660787,22661216..22661311, 22662434..22662475,22662813..22663298)) /locus_tag="TCM_045152" /product="DNA-directed RNA polymerase E subunit 1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19630.1" /inference="similar to AA sequence:Phytozome:GSVIVT01013491001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc281t10" mRNA complement(join(22647564..22648286,22649265..22651137, 22651228..22651368,22651480..22651653,22651908..22652182, 22653417..22653574,22655472..22655596,22655710..22655776, 22655934..22656109,22656215..22658101,22658202..22658360, 22658957..22659121,22659359..22659412,22660404..22660516, 22660661..22660787,22661216..22661311,22662434..22662475, 22662813..22662879)) /locus_tag="TCM_045152" /product="DNA-directed RNA polymerase E subunit 1, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19630.1" /inference="alignment:exonerate- protein:2:ricco:30131.m007197" /inference="similar to AA sequence:Phytozome:GSVIVT01013491001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7710t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc281t10" CDS complement(join(22648059..22648286,22649265..22649379, 22649816..22651137,22651228..22651368,22651480..22651653, 22651908..22652182,22653417..22653574,22655472..22655596, 22655710..22655776,22655934..22656109,22656215..22658101, 22658202..22658360,22658957..22659121,22659359..22659412, 22660404..22660516,22660661..22660787,22661216..22661296)) /locus_tag="TCM_045152" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase E subunit 1, putative isoform 1" /protein_id="EOY19809.1" /db_xref="Phytozome:GSVIVT01013491001" /db_xref="TAIR:AT2G40030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5D869" /translation="MEENSSASTVDGEIVGIGFCLATPREIFTASISGFPINHVSQLS NSYLGLPLEFGKCNACGTSEPGKCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCL RMKNKFQIKSGSISDRLLASCCENAPQVSIKEVKTTDGACSLELKQPSRQARTSWEFL EKYGFRYGDHHNTRTLLPCEVMEILKRIPAETRRKLSGKGFFPQEGYILRYLPVPPNC LSVPDISDGVSIMSSDLSTAMLKKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQ YLQVRGTVKASRNIDARYGISKDASDSSTKAWLEKMRTLFIRKGSGFSSRGVITGDPY KKVNEIGIPSEIAQRITFEERVNMHNMRYLQNLVDNKLCLTYRDGSSTYSLREGSKGH TFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD FDGDCIHLFYPQSLAAKAEVFELFSVEKQLLSSHNGNLNLQLATDSLLSLRVMLKTLL FKKADAQQLSMFLSSALPQPAFLKGNSFGPCWTALQILQTAFPACLDCSGDRYLISKS DILTVDFSRDLMQSVINEVVTSIFFEKGPKEVLNFFDSLQPLLMENVFAEGFSVSLED FSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQMENHIRVAKAPVANFILNSSAL GDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVEDVAYQFQSIYPSDGVDYPS AEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICY DGTVRNISSNSIIQFQYGLNARTKPQFPAGEPVGVLAATAMSNPAYKAVLDSTPSSNS SWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAYLVKNHLRKVKLKDT AVELIFEYKQQQTVSESEAGLVGHILLNKAVLKELNISMQEVHMKCQETIISFRKKKK TADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDHLDCTLQDLVDIIYPV LLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVLEKSAVKQNGDAWR TVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSVSMVARGVLKEH LILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFERAAEKCHVDS LSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHMLSSASGPSSTT TCLGEEVDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQPAESSWEKGVS LDKVSSWNVSSAWNKKAEDGDKFAAALTSTTKQSDWCDWGTSKSKTQDAAAAATSTTK KTEWCDWGTSKSKTQEVAATVTGTAEQNEWCDWRTSKSKIQVVAAAVTSTTKQSEWGD WGTSKSKTQDVAAAVTGTMETEWGDWGKGKSKTQDVSPKVDGTCVNEQTKLSDWGLKK NDTQDVSMEEKTFKSNGADTGTSWGTMGKESEKPDANDALPWSGWGTQDVIPTKTLDD SSKSSGWEQQKSPECSQGWGSLDESNQPASSNGWDTPNGLGSTQSEKQHQWGQSRGSR RWASDASKKNHPVKSARVMNDDSSMAAMYTATRQRLDMFTSEEQDILSDVEPLMQSIR KIMHQSGYNDGDPLSALDQSFILENVFTHHPDKAIKMGAGVDYVMVSKHSNFPDSRCF YVVSTDGRKQDFSYRKCLDNFIKGKYPDMADVFIAKYFRKPRFGGFRERSVAPENTEG ENRK" CDS complement(join(22648059..22648286,22649265..22649379, 22649816..22651137,22651228..22651368,22651480..22651653, 22651908..22652182,22653417..22653574,22655472..22655596, 22655710..22655776,22655934..22656109,22656215..22658101, 22658202..22658360,22658957..22659121,22659359..22659412, 22660404..22660516,22660661..22660787,22661216..22661296)) /locus_tag="TCM_045152" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase E subunit 1, putative isoform 1" /protein_id="EOY19810.1" /db_xref="Phytozome:GSVIVT01013491001" /db_xref="TAIR:AT2G40030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5D869" /translation="MEENSSASTVDGEIVGIGFCLATPREIFTASISGFPINHVSQLS NSYLGLPLEFGKCNACGTSEPGKCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCL RMKNKFQIKSGSISDRLLASCCENAPQVSIKEVKTTDGACSLELKQPSRQARTSWEFL EKYGFRYGDHHNTRTLLPCEVMEILKRIPAETRRKLSGKGFFPQEGYILRYLPVPPNC LSVPDISDGVSIMSSDLSTAMLKKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQ YLQVRGTVKASRNIDARYGISKDASDSSTKAWLEKMRTLFIRKGSGFSSRGVITGDPY KKVNEIGIPSEIAQRITFEERVNMHNMRYLQNLVDNKLCLTYRDGSSTYSLREGSKGH TFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD FDGDCIHLFYPQSLAAKAEVFELFSVEKQLLSSHNGNLNLQLATDSLLSLRVMLKTLL FKKADAQQLSMFLSSALPQPAFLKGNSFGPCWTALQILQTAFPACLDCSGDRYLISKS DILTVDFSRDLMQSVINEVVTSIFFEKGPKEVLNFFDSLQPLLMENVFAEGFSVSLED FSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQMENHIRVAKAPVANFILNSSAL GDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVEDVAYQFQSIYPSDGVDYPS AEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICY DGTVRNISSNSIIQFQYGLNARTKPQFPAGEPVGVLAATAMSNPAYKAVLDSTPSSNS SWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAYLVKNHLRKVKLKDT AVELIFEYKQQQTVSESEAGLVGHILLNKAVLKELNISMQEVHMKCQETIISFRKKKK TADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDHLDCTLQDLVDIIYPV LLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVLEKSAVKQNGDAWR TVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSVSMVARGVLKEH LILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFERAAEKCHVDS LSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHMLSSASGPSSTT TCLGEEVDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQPAESSWEKGVS LDKVSSWNVSSAWNKKAEDGDKFAAALTSTTKQSDWCDWGTSKSKTQDAAAAATSTTK KTEWCDWGTSKSKTQEVAATVTGTAEQNEWCDWRTSKSKIQVVAAAVTSTTKQSEWGD WGTSKSKTQDVAAAVTGTMETEWGDWGKGKSKTQDVSPKVDGTCVNEQTKLSDWGLKK NDTQDVSMEEKTFKSNGADTGTSWGTMGKESEKPDANDALPWSGWGTQDVIPTKTLDD SSKSSGWEQQKSPECSQGWGSLDESNQPASSNGWDTPNGLGSTQSEKQHQWGQSRGSR RWASDASKKNHPVKSARVMNDDSSMAAMYTATRQRLDMFTSEEQDILSDVEPLMQSIR KIMHQSGYNDGDPLSALDQSFILENVFTHHPDKAIKMGAGVDYVMVSKHSNFPDSRCF YVVSTDGRKQDFSYRKCLDNFIKGKYPDMADVFIAKYFRKPRFGGFRERSVAPENTEG ENRK" CDS complement(join(22649812..22651137,22651228..22651368, 22651480..22651653,22651908..22652182,22653417..22653574, 22655472..22655596,22655710..22655776,22655934..22656109, 22656215..22658101,22658202..22658360,22658957..22659121, 22659359..22659412,22660404..22660516,22660661..22660787, 22661216..22661296)) /locus_tag="TCM_045152" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase E subunit 1, putative isoform 3" /protein_id="EOY19811.1" /db_xref="Phytozome:GSVIVT01013491001" /db_xref="TAIR:AT2G40030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5D869" /translation="MEENSSASTVDGEIVGIGFCLATPREIFTASISGFPINHVSQLS NSYLGLPLEFGKCNACGTSEPGKCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCL RMKNKFQIKSGSISDRLLASCCENAPQVSIKEVKTTDGACSLELKQPSRQARTSWEFL EKYGFRYGDHHNTRTLLPCEVMEILKRIPAETRRKLSGKGFFPQEGYILRYLPVPPNC LSVPDISDGVSIMSSDLSTAMLKKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQ YLQVRGTVKASRNIDARYGISKDASDSSTKAWLEKMRTLFIRKGSGFSSRGVITGDPY KKVNEIGIPSEIAQRITFEERVNMHNMRYLQNLVDNKLCLTYRDGSSTYSLREGSKGH TFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSAD FDGDCIHLFYPQSLAAKAEVFELFSVEKQLLSSHNGNLNLQLATDSLLSLRVMLKTLL FKKADAQQLSMFLSSALPQPAFLKGNSFGPCWTALQILQTAFPACLDCSGDRYLISKS DILTVDFSRDLMQSVINEVVTSIFFEKGPKEVLNFFDSLQPLLMENVFAEGFSVSLED FSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQMENHIRVAKAPVANFILNSSAL GDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVEDVAYQFQSIYPSDGVDYPS AEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICY DGTVRNISSNSIIQFQYGLNARTKPQFPAGEPVGVLAATAMSNPAYKAVLDSTPSSNS SWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAYLVKNHLRKVKLKDT AVELIFEYKQQQTVSESEAGLVGHILLNKAVLKELNISMQEVHMKCQETIISFRKKKK TADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDHLDCTLQDLVDIIYPV LLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVLEKSAVKQNGDAWR TVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSVSMVARGVLKEH LILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFERAAEKCHVDS LSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHMLSSASGPSSTT TCLGEEVDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQPAESSWEKGVS LDKVSSWNVSSAWNKKAEDGDKFAAALTSTTKQSDWCDWGTSKSKTQDAAAAATSTTK KTEWCDWGTSKSKTQEVAATVTGTAEQNEWCDWRTSKSKIQVVAAAVTSTTKQSEWGD WGTSKSKTQDVAAAVTGTMETEWGDWGKGKSKTQDVSPKVDGTCVNEQTKLSDWGLKK NDTQDVSMEEKTFKSNGADTGTSWGTMGKESEKPDANDALPWSGWGTQDVIPTKTLDD SSKSSGWEQQKSPECSQGWGSLDESNQPASSNGWDTPNGLGSTQSEKQHQWGQSRGSR RWASDASKKNHPVKSARVMNDDSSMAAMYTATRQRLDMFTSEEQDILSDVEPLMQSIR KIMHQSG" mobile_element 22649863..22650589 /note="source:CACAO_Mutator_E1018_scaffold_5 55 784" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(22663489..22666391) /note="source:CACAO_M_E70096_F230_scaffold_10 1 2903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22666297..22666402) /note="source:INTACT649F_F368_scaffold_5-int 4128 4232" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22671437..22676466) /note="source:CACAO_on_SS_E42_scaffold_2 11016 16079" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22680960..22681013 /note="source:CACAO_M_E48708_F230_scaffold_6 1745 1798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22680965..22681018) /note="source:CACAO_M_S_E14444_F98_scaffold_2 2019 2072" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22681774..22690630) /locus_tag="TCM_045155" /note="dbxref CacaoGD:Thecc1EG045155" mRNA complement(join(22681774..22682827,22690596..22690630)) /locus_tag="TCM_045155" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.62 coverage" CDS complement(22682111..22682404) /locus_tag="TCM_045155" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19812.1" /translation="MPPLCRGLKPKLQVDSFLQLPLVSVRPCHSLSSESYQQVYRQNW HLDSDQGALMIVPRNIGLRLKRLLAELLVISLLTMLVLFTLFLKQSIFHNLSS" mobile_element complement(22683323..22683374) /note="source:scaffold_5_CACTA_0584 1984 2035" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22683335..22683418) /note="source:CACAO_M_E42040_F98_scaffold_5 611 681" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22690760..22693750 /locus_tag="TCM_046961" /note="dbxref CacaoGD:Thecc1EG046961" mRNA join(22690760..22690881,22690964..22691181, 22691251..22691502,22691607..22691881,22692776..22693750) /locus_tag="TCM_046961" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013493001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046962t1" /inference="similar to AA sequence:ricco:30131.m007198" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00938t00001" CDS join(22690764..22690881,22690964..22691181, 22691251..22691502,22691607..22691881,22692776..22693658) /locus_tag="TCM_046961" /note="dbxref ricco:30131.m007198; paralog of Thecc1EG046962t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY19813.1" /db_xref="TAIR:AT3G54450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GM07" /translation="MDSSVTPVTMDNDHHHNSSKVSSQKKSYKGGWSAAIFVIFVEMA ERFAFYGLAGNLIQYLTNNLGEPVATAAKNVNTWIGVSAIFPLLGAFVADSYLGRFKT ILASSFIYFLGMVLLSLSVSVIPMHSRKAVFFTALYVLAIGEGGHKPCVQTFAADQFD ENNPKEKAAKSSFFNWWYLGIVTGASVAIVVVIYLQDNVSWTAGFGVLAGSLAVALAL FLIGIKRYRSQKPTGSPFTAMAQVFVAAAKKWRVSETHRGRGICYEDERGGSHGHGQT KGYNLVRTKQFRFLDKAMIIDNEDAMSKTKNPWRLCSLNQVEEVKLVLRLIPIWLGCL MFCAVIAQLHTFFTKQGSTMMRSIGPNFQVPPAALQSLVGFTILIAVPVYDRVFVPMA RKITGHPSGITMLQRIGIGLFVSMLNMVVAGLIETARVNTARKHGLMDNPKAVVPMSV WWLLPQYVLTAIGDVFTIVGLQELFYDQMPEEMRSIGAAAYISIVGVGSFINTAIISV VQVITSRHGSVWLGDNLNRAHLNYFYWVLAGLSGINLCVYMWITSGFVYKKVENDETR EGKELEMEGYLEVKV" gene 22702782..22705480 /locus_tag="TCM_046962" /note="dbxref CacaoGD:Thecc1EG046962" mRNA join(22702782..22703258,22703338..22703453, 22703647..22703898,22704066..22704340,22704482..22705480) /locus_tag="TCM_046962" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:frave:gene14290.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046961t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06440.1" /note="quality class is strong-expertchoice, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS join(22703171..22703258,22703338..22703453, 22703647..22703898,22704066..22704340,22704482..22705355) /locus_tag="TCM_046962" /note="paralog of Thecc1EG046961t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY19814.1" /db_xref="Phytozome:POPTR_0001s06440.1" /db_xref="TAIR:AT3G54450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GM07" /translation="MDSLVAPVTTQIGHTKSSRGGWKAAIFIIFVEMAERFAFYGLAG NLITYLTNNLGQPIATAVKNVNTWGMVLLSLSVSVIPKHSREAVFFTALYLLAIGEGG HKPCVQAFAADQFDENNPEEKAAKSSFFNWWYLGIVTGSSLAIVAVVYLQDNVSWTAG FGVLAGSLAVAFALFLIGIKRYRKQSPAGSQFTRVAQVLVAAAKKWRVSETHGGRGIC LEDQSSDCYACGQTRGRTLVRTKQFRFLDKAMIIDDVDDMSMTRNPWRLCSLNQVEEV KLVLCLIPIWLSGLMFFVVVAQLQTFFVKQGSTMIRSMGSNFQVPAAAMQCIVGLTVL IAVPIYDRVFVPIARKIFGHRTGITMLQRIGIGLLVAIVNMVVAGLIETKRINTAKNY GLVDSPKIVVPMSIWWLLPQYVLIGIGDVFTIVGLQELFYDQMPEGIRSLGAAVFVSV VGVGSFINNAIIAILQKITSRNENVWLGNNFNRAHLNYFYWVLAGLNAVNFCVYLWIA NRFVYKRIGSDETRDERELENEGYSN" gene 22707615..22724651 /locus_tag="TCM_045156" /note="dbxref CacaoGD:Thecc1EG045156" mRNA join(22707615..22707717,22721677..22722359, 22724609..22724651) /locus_tag="TCM_045156" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002211t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(22709725..22712463) /note="source:CACAO_M_E70095_F73_scaffold_10 1 2712" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 22721752..22722306 /locus_tag="TCM_045156" /note="paralog of Thecc1EG002211t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19815.1" /translation="MKKRERYDWQGADAPCQAPLSPARREFFASGRVVERPLQSPEIG YKWEGENLQQRGGSFLSNGEQPRSRKIEKEGEAFCCRQGELSRRKNREGGREPAAKGE NLQQRERTCSKGGTSFLSNGKQPENQKNREAELCRKIEKRRRGVLLPAQEEGAPDGGR ERGAAVGAAPEREERRLARHQICK" gene 22724983..22735886 /locus_tag="TCM_045159" /note="dbxref CacaoGD:Thecc1EG045159" mRNA join(22724983..22725865,22726097..22726520, 22726773..22727102,22727461..22727910,22728457..22728977, 22729173..22729680,22730482..22731386,22735794..22735886) /locus_tag="TCM_045159" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g14130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022312t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc2Loc5251t1; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc6697t2" CDS join(22725231..22725865,22726097..22726520, 22726773..22727102,22727461..22727910,22728457..22728977, 22729173..22729680,22730482..22731111) /locus_tag="TCM_045159" /note="paralog of Thecc1EG022312t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19816.1" /translation="MASSSAGPLNIYRNDYEIELQIRQIQQEKGDCLTQGHISILPER VHLDLQQNDFTEMIGIWEQWRRAHRDNFQNKYGHIAWLLYVPVDDQMLRAIVQFWDPS YRCFVFNKVDMTPTIEEYSSLLRIDHMQPDKIYWRSQKTGHRRKLAKLLGMTTVEVDQ HLKKKGDTECLPWSFLNGYIKKHMEDEQGLLAFAMAIYGLVVFPKVLGHVEVEWPDYK RKEEWVATLQRLMSIEVTWRALWMPRMQVMYKCGDKPWVPLMGPWGAISYAPIMVRRQ FESEQFVPMTHQLDQLEFTYGEPETLKRIEEIAQDWKKTCRVDQGRVTDEVTTGYHTW HDQRVKNVIHPPKNPSKHPHEVQRKEQTIQELKNDCDMLETAMEGYKAQYEVVRQEYF QMRERNNSCAQSLQRKEAEMQWILRQMREVAFRARVMADKTEELRREILPKDELSERL ISHLKMVRDQYDKIMGDEHSERMDKIEKKQEEIMGQLSKILELISTDKGKKAAGRSGT PEDVQQTETNTDPVYPPGFTPPPARNASIPMPSVGQYPFFGMPIGPPPTYAQQRPIGG ASPSDPISVPDLDDPKEQEKLKCGSVESKDNPDTHQKFDLFEERLRMNFADMVISGEM IETAIKQGKIEGGDMANTRKGGTFKRKEGEAQAVTSGQHQGGTYNPYQPYLPYPYYPA VHNTSQSPYPYPPMPNAFPNPYPYNPIQRTPYPPASTPVTASTTQQTTPSNNHTTGES RGWRNKQEKVQFDPIRIPYAELFTQLVANHLVAPLYIEPLKPPFPRWEVYVKRNIREV ETSMEKVFEALVKADMLEVWPECPNVNDSRDIQRLYCLYHKGCVGHSIQGCSSFRKEV QRMMDESKIEFYTEASESAVNMISKESTHPMKIKPLTIFYKPKGEFVEDKNHAKMIIE VPKPFPYKDNKAVPWNYNCNVQVSEAKKWIAESQDDAANITSDLLISKPADTPYVEAT EEMPECSFRSFEFVNTTYVGEGTTPPIPRLSKTTKMIVSQILGKGYRAGAGLGKELQG IRSPIRTTKNEERFGLGYKPTKKEREEMIAERRKERLARFKGHELEIRGMTYPHLYKT FRSGGCIFPESLTVENQESVSALGGTFSDLSICATEEGEEQPRNVDEIPTTYLGPPNL KLSNWTTMSLPVTCDSISK" mobile_element complement(22727451..22728317) /note="source:CACAO_M_E58877_F5_scaffold_9 15440 16296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22728418..22729677) /note="source:CACAO_M_E58877_F5_scaffold_9 14122 15378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22730468..22731554) /note="source:INTACT1427F_F390_scaffold_9-int 7568 8654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22731773..22732563) /note="source:CACAO_M_E58877_F5_scaffold_9 11823 12613" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22732664..22733315) /note="source:CACAO_M_E58877_F5_scaffold_9 11136 11787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22733416..22734089) /note="source:CACAO_M_E58877_F5_scaffold_9 10429 11102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22734190..22734854) /note="source:CACAO_M_E58877_F5_scaffold_9 9690 10354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22735535..22736045) /note="source:CACAO_M_E58877_F5_scaffold_9 8538 9059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22740806..22741511 /note="source:INTACT579_F10_scaffold_3-int 5042 5744" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(22741666..22745165) /locus_tag="TCM_045161" /note="dbxref CacaoGD:Thecc1EG045161" mRNA complement(join(22741666..22741988,22742425..22742479, 22743801..22744217,22745031..22745165)) /locus_tag="TCM_045161" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(22741832..22741988,22742425..22742479, 22743801..22744050)) /locus_tag="TCM_045161" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19817.1" /translation="MDVEVFGRVEENIESFEKEFGVLDEIGNTRDLEQKESDQKKCLM GELWVAQRNKESMWKQKLRKKWVKERDKNKKFFQINLSLANSGRVCMWELAMKRFPDR MLNLIGERGYRWLLGNGEKIGFLHDRWLENKPFKTIYIRLYTLARRKDATA" gene complement(22745271..22746505) /locus_tag="TCM_045162" /note="dbxref CacaoGD:Thecc1EG045162" mRNA complement(join(22745271..22745763,22746413..22746505)) /locus_tag="TCM_045162" /product="Late embryogenesis abundant protein" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8490t1" CDS complement(join(22745593..22745763,22746413..22746490)) /locus_tag="TCM_045162" /codon_start=1 /product="Late embryogenesis abundant protein" /protein_id="EOY19818.1" /translation="MQAIKEKLHEMGEMQKAKAEAKAEEKAEKDLAKARMNIAHEVRK AKEAEAEMDMHVAKAGNMAKREVDKHASETHNRNANHS" mobile_element complement(22750327..22753322) /note="source:INTACT666_F293_scaffold_9-int 15673 18111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22756731..22756825) /note="source:scaffold_6_CACTA_0712 1377 1474" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22757272..22757321) /note="source:scaffold_6_CACTA_0712 1314 1363" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22759782..22763632) /note="source:INTACT803_F10_scaffold_6-int 1 4957" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22764100..22766304 /note="source:scaffold_7_CACTA_0793 3961 6174" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22766314..22767494) /note="source:CACAO_M_S_E119980_F13_scaffold_10 1 1181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22767522..22771549 /note="source:scaffold_7_CACTA_0793 6166 10237" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22772153..22775468 /note="source:CACAO_M_E32971_F85_scaffold_4 1 3302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22779152..22780141) /note="source:scaffold_6_CACTA_0712 7929 8888" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22780139..22781898) /note="source:scaffold_6_CACTA_0712 3963 5704" /mobile_element_type="transposon:TIR/CACTA" gene 22781404..22788688 /locus_tag="TCM_045167" /note="dbxref CacaoGD:Thecc1EG045167" mRNA join(22781404..22781652,22785640..22785786, 22787188..22787663,22787822..22788688) /locus_tag="TCM_045167" /product="Ankyrin repeat family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045179t1" /inference="similar to AA sequence:frave:gene21766" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01880t00002" mobile_element complement(22781957..22782608) /note="source:scaffold_6_CACTA_0712 3331 3964" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22784430..22784517 /note="source:CACAO_M_S_E14849_F156_scaffold_2 709 792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22784440..22785302) /note="source:scaffold_6_CACTA_0712 492 1357" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22785362..22785428 /note="source:CACAO_M_E42586_F54_scaffold_5 1764 1820" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(22785654..22785786,22787188..22787663, 22787822..22788442) /locus_tag="TCM_045167" /note="dbxref frave:gene21766; paralog of Thecc1EG045179t1" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY19819.1" /db_xref="TAIR:AT5G35810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BT79" /translation="MLEVLGDLAWARDSDDETALGILARKPSAFAGESSTTLKTLIAK CFGTNTISMQNTAIELTKLLCETMSSDDHKSFRETIDHASELLFEAARLGNYKFLAVV IGSFPDLIFRKDETNKSIFHIAVLHRHASIFNHIHNLGLQKDLIMLHRVRYPDQENPS INQENPSIIYIMLHLAAKLPSLDRLTIVSGAALQMQRELLWFKEVENLTQPSEREKRD SKYKLTPRELFTKEHEKLRKDGEEWMKSTAEQGMIVATLITAVVFTTASSVPGGTNGE NGTPSNITKTMFHVFAVSDSVAMCSSIISTLMFLSIITSRYAEEDFLVRLPLKLAAGL TALLVSMMALMVSFSAIYFLNYSQLSKLKWVPVLTSALSFLPAALFVLLQYHLLHDVF RSTFGSKHIFRPDKSTF" mobile_element complement(22788974..22793856) /note="source:CACAO_M_S_E119979_F330_scaffold_10 1 4883" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22794609..22795944 /note="source:INTACT1427F_F390_scaffold_9-int 1 1339" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22802287..22803757) /locus_tag="TCM_045170" /note="dbxref CacaoGD:Thecc1EG045170" mRNA complement(22802287..22803757) /locus_tag="TCM_045170" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS complement(22803251..22803514) /locus_tag="TCM_045170" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19820.1" /translation="MEMKEDRSRVKKKGDIDSKRARGSSMVEGRIRLWVINQQYVDGL WKIGVDKKGRKSARRNMREVLSDGLRSADEMDHESISHSNIAH" mobile_element complement(22804195..22804240) /note="source:CACAO_M_E5892_F98_scaffold_2 1939 1983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22811397..22811863) /note="source:CACAO_M_E34910_F19_scaffold_5 4620 5093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22811861..22812171) /note="source:CACAO_M_E34910_F19_scaffold_5 4553 4861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22813623..22814260) /note="source:CACAO_M_E50311_F328_scaffold_7 5822 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22814525..22814829) /note="source:CACAO_M_E50311_F328_scaffold_7 5573 5883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22814910..22817209) /note="source:CACAO_M_E50311_F328_scaffold_7 3291 5579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22822733..22823977 /note="source:CACAO_M_E14492_F13_scaffold_3 1 1179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22826000..22826095) /note="source:scaffold_6_CACTA_0712 1411 1507" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22826017..22826105 /note="source:scaffold_6_CACTA_0712 1393 1495" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22826050..22826115 /note="source:CACAO_M_E42040_F98_scaffold_5 635 701" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22827536..22834979) /locus_tag="TCM_045172" /note="dbxref CacaoGD:Thecc1EG045172" mRNA complement(join(22827536..22828349,22834599..22834979)) /locus_tag="TCM_045172" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(22827957..22828274) /locus_tag="TCM_045172" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19821.1" /translation="MIFHHIIDEISASKFLTISQIRQVKLKLYRLEMTERERLTTHEQ NFNQIIEDLKKLGVKMGEEQKALMFVASLPKELAHAVKSKIRNEKKLTLARVQDAAGE VRE" mobile_element 22833494..22834196 /note="source:CACAO_M_E72867_F9_scaffold_10 107 805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22836246..22838011 /note="source:CACAO_M_E9963_F96_scaffold_2 1 1825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22836439..22839125) /note="source:CACAO_M_S_E89656_F313_scaffold_8 1 2646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22845558..22845715) /note="source:CACAO_M_E69551_F193_scaffold_9 12181 12333" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22845716..22845736 /note="source:INTACT415F_F22_scaffold_4-int 13710 13872" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22846694..22848127 /note="source:CACAO_M_E4676_F9_scaffold_2 1 1417" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22848249..22850982) /note="source:INTACT443_F215_scaffold_4-int 312 3046" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22850978..22851195) /note="source:INTACT443_F215_scaffold_4-int 4213 4429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22854233..22859304) /note="source:CACAO_M_S_E119968_F36_scaffold_10 1 5072" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22862747..22862794 /note="source:CACAO_M_S_E15462_F12_scaffold_2 4797 4844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22871723..22871822 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3189 3287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22872768..22873539 /note="source:INTACT135F_F90_scaffold_2-int 13185 14006" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22874058..22874377) /note="source:CACAO_Again_on_E205_scaffold_9 8329 8866" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22877437..22880530) /note="source:CACAO_M_E43479_F273_scaffold_5 1 2992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22880531..22883713 /note="source:CACAO_M_E1021_F7_scaffold_1 152 3341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22883736..22885076 /note="source:INTACT672_F7_scaffold_8-int 3873 5213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22885075..22888041) /note="source:CACAO_M_E49928_F245_scaffold_7 1 2966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22888042..22890027 /note="source:CACAO_M_S_E121934_F7_scaffold_10 11799 13774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22889973..22890286) /note="source:INTACT283_F50_scaffold_9-int 10005 10320" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22890026..22892986 /note="source:scaffold_4_CACTA_0503 3235 6181" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22892635..22896077 /note="source:CACAO_M_E65050_F7_scaffold_9 18280 21678" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22902582..22907629 /locus_tag="TCM_045179" /note="dbxref CacaoGD:Thecc1EG045179" mRNA join(22902582..22903045,22903167..22903322, 22903427..22903918,22904374..22904520,22905923..22906419, 22906578..22907629) /locus_tag="TCM_045179" /product="Ankyrin repeat family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045236t2" /inference="similar to AA sequence:frave:gene21766" /note="quality class is strong, express is medium, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc331t40_G2" CDS join(22903000..22903045,22903167..22903322, 22903427..22903918,22904374..22904520,22905923..22906419, 22906578..22907198) /locus_tag="TCM_045179" /note="dbxref frave:gene21766; paralog of Thecc1EG045236t2" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY19822.1" /db_xref="TAIR:AT3G18670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BT79" /translation="MGFRAWLRQVLRTMQEKVDHFLGLGVRPENETETETVDQESPLS PELCICQRRWDSNNYRQPSPHLPEGEKGFYVGQGVPLYKATLNGDREKMQQILNRNDR TLLCSSLTEGHETALHVAVGARQAAVVEELVERMESADLVLRNGRGNTALCVAVATGS VKIAKILMEKKAELAFIRGADNKTPLYIAAVSGCPEMVRFLYEIYKQHISHLTDEAEQ RDMFLACIHAGLFDLAIKMLKGLRDLAWARNSDDETALGILARKPSAFAGESSTTPKT LIDKCFGTNTISMQNTAIELTKLLCETMSSDEGKSFRETIDHASELLFEAARLGNYKF LAVLIGSFPDLIFRKDETNKSIFHIAVLHRHASIFNHIHNLGLQKDLIMLHRVGYPHQ ENPSNNQENPSSNQENTSIIYIMLHLAAKLPSLDRLTIVSGAALQMQRELLWFKEVEN LTQPSEREKRDSKYHLTPRELFTKEHEELRKAGEEWMKSTAQSGMIVATLITAVVFTT ASSVPGGTNGENGTPSNITKTMFHVFAVSDSVAMCSSIISTLMFLSIITSRYAEEDFL VRLPLKLAAGLTALLVSMMALMVSFSAIYFLNYSQLGKLKWVPVLTSALSFLPAALFV LLQYHLLHDVFRSTFGSKHIFRPDKSTF" mobile_element complement(22907752..22908097) /note="source:CACAO_M_S_E119979_F330_scaffold_10 4537 4882" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22908091..22912322) /note="source:CACAO_M_S_E119979_F330_scaffold_10 1 4245" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(22908215..22912027) /locus_tag="TCM_045180" /note="dbxref CacaoGD:Thecc1EG045180" mRNA complement(join(22908215..22909148,22909485..22910256, 22910374..22910792,22911147..22912027)) /locus_tag="TCM_045180" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031535t1" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage" CDS complement(join(22908931..22909148,22909485..22910256, 22910374..22910792,22911147..22911747)) /locus_tag="TCM_045180" /note="paralog of Thecc1EG031535t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19823.1" /db_xref="Phytozome:Glyma07g34840.1" /translation="METYLRAYDLWGIIAARGDPLVLSVTNPTIAQLKQHNKEVAKRY KALSVLHSTIYDSIFTRIMNCQSPKEVWDKIKEEFFGNDRTRQIQALNLWREFETLRM DDEETVQDFSEKVHKIVNHLRLLGEELSEKRIINKFLVSVPEKYELKISSLEDFKDLS SISVNELLNALQAQEQRGALRQDKVVEGVLMARNADKRHNSCKQIFQTLDDNFKTKME IGNGDFLLIFGVGTVRVQTLDGLQSISNVFYELDVSQNLLSVRHLLDDNYELVFKDKA CTVKDPTGVELLTVGMKNKCFPLDWMKVNHFADNCTMTENDLWHKRFGHVNYGSLKLM STDKMVLLHTNLGGHMKTSSLNGSKYYLLFINDYTRFSWVYFLKVKSNALNAFIKYKA LVENQTNLTSKMLRSDNGTEYATKEFEGHLSKFGVMHQLIVSYSSQQNGVFERKNRTL MEMARCLLFEKNLPKTLWAEAMNTANYLLNLCSTKALVSKTPYEAWYGLKPFVDHLKI FGCICYAKIPDAKRTKLDEKSVIVIHLGYSEVSKGYRLLNVMTMKFFVSRDIVFDESM KWNWNTKAMESSYSQHILIDYISKNEDEPESVARHDTIRLLMALATCEGWEIWHLDIK SAFFNGTIKENIYVEQLEGFVQLEREDKVCKLLKTLYGLKQAPRA" gene complement(22916174..22923279) /locus_tag="TCM_045182" /note="dbxref CacaoGD:Thecc1EG045182" mRNA complement(join(22916174..22916933,22917010..22917068, 22919019..22919676,22922970..22923279)) /locus_tag="TCM_045182" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045211t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.37 coverage" CDS complement(join(22916795..22916933,22917010..22917068, 22919019..22919267)) /locus_tag="TCM_045182" /note="paralog of Thecc1EG045211t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19824.1" /translation="MKEGEHLTKHEKDFDQIIEKLTKLGVKMGEEQITLMFLASLPNS FADALESVIHAKMMLTLAEAREEWRRIKAENVKTWEGEEERGAALGTSLLPITKGREY WNADERIRKGDTGRSVAAFDNFINKIGLLDLPLAVQNTHGVVIEMI" mobile_element complement(22919902..22922866) /note="source:CACAO_M_E70082_F228_scaffold_10 1 2965" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22929239..22936254) /locus_tag="TCM_045183" /note="dbxref CacaoGD:Thecc1EG045183" mRNA complement(join(22929239..22929483,22930936..22931009, 22931103..22931204,22931327..22931605,22932184..22932285, 22936137..22936254)) /locus_tag="TCM_045183" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(22930953..22931009,22931103..22931204, 22931327..22931470)) /locus_tag="TCM_045183" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19825.1" /translation="MTGFRGLILRGVSLTGNLNNGKTLEICLVISTSSRILATNSSKK GVLVLHHGRLAINSTLVSKAILSIGVNTRLLCRQQVEMAIVYFLSRLEMAGSFKNG" gene complement(22941850..22942682) /locus_tag="TCM_045184" /note="dbxref CacaoGD:Thecc1EG045184" mRNA complement(22941850..22942682) /locus_tag="TCM_045184" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(22941870..22942151) /locus_tag="TCM_045184" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19826.1" /translation="MKERKGLAEHTNNFNEIIKMLRKLGVEIGEEQITLMFLASLHDS YADAEKSVICAQKKLTLANAQEAARLTRKSKQVSNKLLKPSGSIVSPAG" mobile_element complement(22954620..22956319) /note="source:INTACT505_F28_scaffold_3-int 7229 8943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22956433..22958123) /note="source:INTACT505_F28_scaffold_3-int 5280 7242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22958122..22958561) /note="source:INTACT505_F28_scaffold_3-int 11146 11581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22958564..22960391 /note="source:INTACT713_F309_scaffold_9-int 1028 2852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22961203..22962776) /note="source:scaffold_10_CACTA_0134 1081 2650" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22963091..22964569) /note="source:INTACT505_F28_scaffold_3-int 9547 11046" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22965476..22966137) /note="source:CACAO_M_E35674_F13_scaffold_5 3112 3680" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22970369..22972402 /locus_tag="TCM_045187" /note="dbxref CacaoGD:Thecc1EG045187" mRNA join(22970369..22970456,22970854..22971148, 22971241..22971361,22972029..22972402) /locus_tag="TCM_045187" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma13g13950.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS join(22970432..22970456,22970854..22971148, 22971241..22971361,22972029..22972220) /locus_tag="TCM_045187" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19827.1" /db_xref="Phytozome:Glyma13g13950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AN19" /translation="MNFVNDFIVIKESSRDYTPISLVVSIYKIIAKVLENKMNKIIRE VVENQQFAFVVRRQLMDCALSANEAVDIMREDHEGGVFFKVNFAKAYDTVSWGFLDFI LSKIRRKIGLRQGCPLTLFLFNCVVEAFSVKIRKVLSLRLCKRIEVTFFREEETKVSN PLFGKTLRRPSCKKERTGEDKGVVKEGISFILGNGENLRFWTKVWTRRGY" mobile_element complement(22972346..22973789) /note="source:CACAO_M_E70076_F9_scaffold_10 1 1444" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22974232..22975636 /locus_tag="TCM_045188" /note="dbxref CacaoGD:Thecc1EG045188" mRNA join(22974232..22974978,22975102..22975144, 22975306..22975636) /locus_tag="TCM_045188" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003565t1" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.90 coverage" CDS 22974617..22974943 /locus_tag="TCM_045188" /note="paralog of Thecc1EG003565t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19828.1" /translation="MFSKASQRVDANMAEILANREAIKIFLALRWVRSHTLMVESNSS NVVSWIRNPKRAQWKHKRDLMILEGIKRRIGECSVRKINREANDIVDELAKSGMREEE LLFICD" gene 22975712..22976935 /locus_tag="TCM_045189" /note="dbxref CacaoGD:Thecc1EG045189" mRNA 22975712..22976935 /locus_tag="TCM_045189" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc12484t1" CDS 22976281..22976712 /locus_tag="TCM_045189" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19829.1" /translation="MMMTTKVQIFFSYQWDFQPCCSSWLGDFSSMQVAKLFADRLMCF SVFCIVLAWCSLLGALCWFLLTSLDFFARCSMPVSVRTVGFFVELVAKQKIKGTPWAD PCRRECCHMTPLTFPLLVLTSCCKFFLLPSFELFLAFWRIS" gene complement(22977981..22982999) /locus_tag="TCM_045190" /note="dbxref CacaoGD:Thecc1EG045190" mRNA complement(join(22977981..22978541,22979303..22979560, 22982854..22982999)) /locus_tag="TCM_045190" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc716t1" CDS complement(join(22978239..22978541,22979303..22979560, 22982854..22982940)) /locus_tag="TCM_045190" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19830.1" /translation="MPRNDVLRERKLEFVRLMDTRGSSLPAGKWAKNYWEIKLYRLKM KEDEDLNKHEKDFDQIIDKLRSLRVEIAEEEKTLIFLESLPDSFADAVKIVIHDTKKL TLAKAREQLKTIKVKLNLYRLEMKESEGLTKHEEDFDQIIEESKKLGVKMGEEQITLM FLASLPNSFADAVESVINAKEMLTLAQVRAKAGREWMKIKKELKREADNVKTRKG" mobile_element complement(22989447..22989769) /note="source:scaffold_5_CACTA_0614 2169 2480" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22989816..22991375 /note="source:CACAO_M_E13363_F273_scaffold_3 1 1566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22991369..22991513 /note="source:CACAO_M_E58877_F5_scaffold_9 17820 17965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22991614..22993420 /note="source:CACAO_M_E49539_F76_scaffold_7 3256 5062" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22992290..23067659) /locus_tag="TCM_045192" /note="dbxref CacaoGD:Thecc1EG045192" mRNA complement(join(22992290..22992930,22994529..22994768, 22996862..22997218,23015147..23015377,23067654..23067659)) /locus_tag="TCM_045192" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035534t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.41 coverage" CDS complement(join(22992833..22992930,22994529..22994700)) /locus_tag="TCM_045192" /note="paralog of Thecc1EG035534t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19831.1" /translation="MKKERREVRLAGCGRTLPGTSLTCQTRKIRVWQGSGNCPLMPRD KAMESAPSRAQKSVAIPGRYSLGSESESRPHQYDGRASILRFRNS" mobile_element 22993515..22994778 /note="source:CACAO_M_E49539_F76_scaffold_7 5050 6200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22994767..22996153 /note="source:CACAO_M_E13467_F247_scaffold_3 1509 2896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22998120..22998349 /note="source:scaffold_5_CACTA_0614 3180 3415" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22998138..22998446) /note="source:scaffold_5_CACTA_0614 107 404" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23005869..23005923) /note="source:CACAO_M_E84368_F4_scaffold_10 8753 8803" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23007438..23007558) /note="source:INTACT1604F_F75_scaffold_10-int 386 507" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23010339..23014354) /note="source:INTACT1604F_F75_scaffold_10-int 1014 5024" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(23014944..23112927) /locus_tag="TCM_045194" /note="dbxref CacaoGD:Thecc1EG045194" mRNA complement(join(23014944..23015377,23112817..23112927)) /locus_tag="TCM_045194" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00233t00002" CDS complement(join(23015132..23015377,23112817..23112909)) /locus_tag="TCM_045194" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19832.1" /translation="MSKNLNVLSLDDVPGPIKLMEGKEGSSAAKKKSELTGEEMVKQI IDGLRELAEKIGQRKETIKQQEKALKRELLDQIMKVLTIAVETITSVEEPTANKARAN DKGKSNVEKK" mobile_element 23018042..23018888 /note="source:INTACT51_F23_scaffold_9-int 3110 3951" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23018989..23019052) /note="source:CACAO_M_S_E38262_F319_scaffold_4 9919 9969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23019769..23020828 /note="source:INTACT51_F23_scaffold_9-int 3974 5031" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23022354..23023120 /note="source:INTACT51_F23_scaffold_9-int 5088 5819" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23023092..23023247) /note="source:INTACT1604F_F75_scaffold_10-int 693 848" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23027239..23030118 /note="source:CACAO_M_E69967_F273_scaffold_9 60 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23030494..23031077 /locus_tag="TCM_045196" /note="dbxref CacaoGD:Thecc1EG045196" mRNA 23030494..23031077 /locus_tag="TCM_045196" /product="Regulatory particle triple-A 1A" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045209t1" /inference="similar to AA sequence:frave:gene05485" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS 23030625..23031035 /locus_tag="TCM_045196" /note="dbxref frave:gene05485; paralog of Thecc1EG045209t1" /codon_start=1 /product="Regulatory particle triple-A 1A" /protein_id="EOY19833.1" /db_xref="TAIR:AT1G53750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q01FU4" /translation="MHVWLFDEVDAIGGARFDDGVGGDNEVPPTMLGIVNQLDGFDAR GDIKVLMATNRPDTLDPALLRPGRLDCKVEYGLPDMESRTQIFKIRTRIMNCERYIRF ELLARLGPNSTGANIRTVCKGWTICNTSNKEDEN" gene complement(23031785..23059394) /locus_tag="TCM_045197" /note="dbxref CacaoGD:Thecc1EG045197" mRNA complement(join(23031785..23031809,23058771..23059394)) /locus_tag="TCM_045197" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046162t1" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1SvscxLoc438t1_G2" mobile_element complement(23039775..23039829) /note="source:CACAO_M_E84368_F4_scaffold_10 8753 8803" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23041630..23042530) /note="source:INTACT1604F_F75_scaffold_10-int 4101 5024" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23042631..23045871) /note="source:INTACT1604F_F75_scaffold_10-int 820 4047" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23047006..23049757 /note="source:INTACT51_F23_scaffold_9-int 3110 5819" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23049729..23049884) /note="source:INTACT1604F_F75_scaffold_10-int 693 848" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23055466..23055565) /note="source:scaffold_4_CACTA_0495 1027 1134" /mobile_element_type="transposon:TIR/CACTA" gene complement(23057249..23059742) /locus_tag="TCM_045199" /note="dbxref CacaoGD:Thecc1EG045199" mRNA complement(join(23057249..23057652,23059436..23059742)) /locus_tag="TCM_045199" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" CDS complement(join(23057362..23057652,23059436..23059525)) /locus_tag="TCM_045199" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19835.1" /translation="MSQKPKILSSSQPEQLKLMDGEGGPPPATTGSLFDLPPTLLFLS KFATTLLHRRPPSSSAIVITKFSVVGHKRQKCWSANPVMLRPDLAVGAPYLAMPLARS ALQRTDLAVAKAKLALRRRRWLLL" mobile_element complement(23058625..23058723) /note="source:scaffold_4_CACTA_0495 1027 1141" /mobile_element_type="transposon:TIR/CACTA" CDS complement(23059164..23059370) /locus_tag="TCM_045197" /note="paralog of Thecc1EG046162t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19834.1" /translation="MKESYQQTSKLCFPRFKQVLIFFALYFEQKELKLIPLYKRLEIF FFFHSTNQVFSLKSKEITATASDR" gene 23059837..23060889 /locus_tag="TCM_045200" /note="dbxref CacaoGD:Thecc1EG045200" mRNA join(23059837..23060362,23060492..23060889) /locus_tag="TCM_045200" /product="Glutathione S-transferase tau 7, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046764t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s07180.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage" CDS join(23060054..23060362,23060492..23060704) /locus_tag="TCM_045200" /note="paralog of Thecc1EG046764t1" /codon_start=1 /product="Glutathione S-transferase tau 7, putative" /protein_id="EOY19836.1" /db_xref="Phytozome:POPTR_0010s07180.1" /db_xref="TAIR:AT2G29420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GRA4" /translation="MVEGKLHGFWASPFSHGVIWALKLKEINYEYVEEDLPNKSELLL KYNPVYKKKPVLVHDGKPIAESLVILEYIEETWPQNPLLPQDVYERAIARFWIKFGEE MGPTVVSLFQTTGEEREKARKQLVQKLKILEEHALGDKKFSGGEAINLVDIEFGVLAH WVEGMEEVMGLQL" gene 23063387..23064190 /locus_tag="TCM_045202" /note="dbxref CacaoGD:Thecc1EG045202" mRNA join(23063387..23063481,23063556..23064190) /locus_tag="TCM_045202" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS join(23063452..23063481,23063556..23063807) /locus_tag="TCM_045202" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19837.1" /translation="MVSEQVGDNEHVGEGLGWCEKFSRWHVPKKHASCSLIKLTLLGC TFDDGVGGDNEEQRTMFEIVNQLDGFDARGAIKVLMATNRPDTLDPANF" gene 23066794..23070179 /locus_tag="TCM_045203" /note="dbxref CacaoGD:Thecc1EG045203" mRNA join(23066794..23066922,23067022..23067149, 23067277..23067837,23068210..23068582,23069187..23069280, 23070106..23070179) /locus_tag="TCM_045203" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong-expresste, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc991t1" mRNA join(23067273..23067837,23068173..23068414) /locus_tag="TCM_045203" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019152t1" /note="transcript variant 2; alternatively spliced; quality class is strong-expresste, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc991t1" CDS join(23067357..23067837,23068210..23068574) /locus_tag="TCM_045203" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19838.1" /translation="MIKHFPSLNEVYNMVLQEESQRSLFIQSQPLIEASAMALIYDSK KKRNMYLVCNHCGKRGHLKDKCFRLIDFPEDFKFTKSKGNFKKGGNVSVNSATVDKEN GHFDDVDVSSAVQLSHIQGQIQKLMALVTERGGIEMNQDSPLSTNQQNKPSLVNSALA VTNGLYIMQRYLSAQIPADFKNAFTRQFNNSTNFSCVFPCANLSSDFSLYSKTVCSNA CSSLKSNFDNWHHRFGHVSLPIQCDGCPLAKQRKLSFPIHVNASTNSFDLIHVDIWGP YTTLT" CDS join(23067357..23067837,23068173..23068207) /locus_tag="TCM_045203" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019152t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY19839.1" /translation="MIKHFPSLNEVYNMVLQEESQRSLFIQSQPLIEASAMALIYDSK KKRNMYLVCNHCGKRGHLKDKCFRLIDFPEDFKFTKSKGNFKKGGNVSVNSATVDKEN GHFDDVDVSSAVQLSHIQGQIQKLMALVTERGGIEMNQDSPLSTNQQNKPSLVNSALA GPSYLDNDWSC" mobile_element 23072830..23074403 /note="source:INTACT1427F_F390_scaffold_9-int 14605 16177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23080597..23080910 /note="source:INTACT700_F304_scaffold_7-int 1716 2038" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23080912..23081306) /note="source:CACAO_M_E70073_F15_scaffold_10 2475 2869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23081542..23084015) /note="source:CACAO_M_E70073_F15_scaffold_10 1 2474" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23084016..23087217 /note="source:INTACT700_F304_scaffold_7-int 2035 5041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23087218..23090556) /note="source:CACAO_M_E70072_F82_scaffold_10 1 3323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23090557..23092670) /note="source:CACAO_M_E3935_F390_scaffold_1 10426 12539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23092641..23095347 /note="source:CACAO_M_E69760_F9_scaffold_9 6681 9395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23095308..23095747) /note="source:CACAO_M_E73015_F273_scaffold_10 5093 5534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23095738..23096597 /note="source:CACAO_M_E58877_F5_scaffold_9 12214 13076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23096598..23099394) /note="source:CACAO_M_E70070_F87_scaffold_10 1 2797" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23108482..23111055 /locus_tag="TCM_045209" /note="dbxref CacaoGD:Thecc1EG045209" mRNA join(23108482..23108793,23109163..23109293, 23110222..23110341,23110453..23111055) /locus_tag="TCM_045209" /product="Regulatory particle triple-A 1A, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11810.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045196t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS join(23108573..23108793,23109163..23109293, 23110222..23110341,23110453..23110862) /locus_tag="TCM_045209" /note="paralog of Thecc1EG045196t1" /codon_start=1 /product="Regulatory particle triple-A 1A, putative" /protein_id="EOY19840.1" /db_xref="TAIR:AT1G53750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q01FU4" /translation="MLSFFSPPPTSDGIQGSCRPPFTGSDVAALGSLFLPLRRQPLLS LFLRSALLSLCANSRSLAPICSWYSLRRRRLCLVALACRIPPNTIVPPPLYTRFLGSG GGTLHYLARHGFFASDKMVAWVKILVAEPEDDPMAEKNPQPLDEDDITLLKTYGLVNG MLFDEVDAIGCARFDDGVGGDNEVLRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP VLLRPGRVDRKVEFGLPDMESRTQIFKIRTRIMTCERCIRFELLARLCSNSTGANIRS VCRGWPVCNTSTKEDEN" mobile_element 23118619..23119963 /note="source:CACAO_M_E69760_F9_scaffold_9 12053 13383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23128654..23130035 /note="source:INTACT135_F42_scaffold_4-int 10147 11518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23130036..23131535) /note="source:CACAO_M_S_E119946_F83_scaffold_10 1 2882" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(23131646..23142710) /locus_tag="TCM_045213" /note="dbxref CacaoGD:Thecc1EG045213" mRNA complement(join(23131646..23132345,23132869..23132939, 23136279..23136453,23140350..23140419,23141258..23141341, 23142600..23142710)) /locus_tag="TCM_045213" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is weak, protein is utrpoor_complete" mobile_element 23132144..23132204 /note="source:CACAO_M_E84908_F12_scaffold_10 6092 6145" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(23132188..23132345,23132869..23132929)) /locus_tag="TCM_045213" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19841.1" /translation="MFMDMGHLTTLAVLVGYLDKDLITVAHRGDTKPDAKPCGVSIDI RGNECHRDIATVVTGPMGVPIRDRTCLA" mobile_element complement(23132205..23134989) /note="source:CACAO_M_E70068_F87_scaffold_10 1 2785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23136175..23136596 /note="source:CACAO_Again_on_E14_scaffold_1 7010 7431" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(23136268..23136596) /note="source:CACAO_M_E57248_F86_scaffold_8 2529 2831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23137812..23138880 /note="source:CACAO_M_E33804_F134_scaffold_4 5251 6327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23138981..23139386 /note="source:CACAO_M_E33804_F134_scaffold_4 6385 6789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23139796..23142760) /note="source:CACAO_M_E70066_F33_scaffold_10 1 2965" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23140240..23148807) /locus_tag="TCM_045214" /note="dbxref CacaoGD:Thecc1EG045214" mRNA complement(join(23140240..23140419,23141258..23141341, 23145484..23145800,23146800..23146921,23148485..23148807)) /locus_tag="TCM_045214" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is weak, protein is utrpoor_complete" CDS complement(join(23145726..23145800,23146800..23146921, 23148485..23148497)) /locus_tag="TCM_045214" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19842.1" /translation="MHGKGKMEVVCCRIVKDKGGFVLLVFEGGRRGCEADSETEKAYR EWKRCSQILLCGSGTTGAIVIPTQE" mobile_element complement(23147225..23150653) /note="source:CACAO_M_E70065_F323_scaffold_10 1 3429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23152569..23152901) /note="source:scaffold_9_CACTA_0934 9307 9639" /mobile_element_type="transposon:TIR/CACTA" gene complement(23152858..23156864) /locus_tag="TCM_045215" /note="dbxref CacaoGD:Thecc1EG045215" mRNA complement(join(23152858..23153784,23156802..23156864)) /locus_tag="TCM_045215" /product="Gag protease polyprotein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s09800.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018236t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" mobile_element 23152897..23152944 /note="source:CACAO_M_E53587_F207_scaffold_8 3779 3827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23152925..23152996) /note="source:CACAO_M_E11415_F328_scaffold_2 3779 3850" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(23153242..23153778) /locus_tag="TCM_045215" /note="paralog of Thecc1EG018236t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY19843.1" /translation="MLPRRGCPPLTRSAKRGRGRPRQNRPDLMEEESAASTIRATPTA EQIESPPHPPLPTGIPTMPLEVAQALAAFFIATASQAQISQVPHIVPPATPTVPPMPN ISISKKLKEARQLGCISFMGELDPTIAKDWINQVSKTLSNMRLEDDMKLMVATQLLEK RARTWWNSVKSRTTTPLT" mobile_element complement(23153947..23157129) /note="source:CACAO_M_E71405_F316_scaffold_10 4800 7988" /mobile_element_type="retrotransposon:LTR/Copia" gene 23157208..23160063 /locus_tag="TCM_045216" /note="dbxref CacaoGD:Thecc1EG045216" mRNA join(23157208..23157626,23158181..23158302, 23159670..23160063) /locus_tag="TCM_045216" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020418t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(23157276..23157626,23158181..23158276) /locus_tag="TCM_045216" /note="paralog of Thecc1EG020418t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19844.1" /translation="MEMGDSTERRLFGWEEEQWREFIPFLKGYHLCVEIDDCLVWKGT LGGEFSVKSFCKQTLNSYNSNGSPWKHIWTNLAPFKIEVLTWQLIHRRVAIKDELVRR AMINSSAAMCPLCDKPETKGRDDGDVFKIYKGGRDDGDVFKIYKGE" gene complement(23160483..23161787) /locus_tag="TCM_045217" /note="dbxref CacaoGD:Thecc1EG045217" mRNA complement(join(23160483..23161102,23161261..23161787)) /locus_tag="TCM_045217" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045179t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(23160761..23160982) /locus_tag="TCM_045217" /note="paralog of Thecc1EG045179t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19845.1" /translation="MKSTAQSGMIVATLITAVVFTTASSVPGGTNGENGTPRDITKTI FHVFAVSDSVAMCSSIISTLMFLSILTSR" mobile_element 23166095..23166421 /note="source:CACAO_M_E13038_F22_scaffold_3 13781 14116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23168272..23168607 /note="source:INTACT646_F284_scaffold_3-int 787 1124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23171026..23171368) /note="source:scaffold_4_CACTA_0494 5 344" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23171573..23171974) /note="source:INTACT88_F12_scaffold_4-int 12720 13124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23172499..23173935 /note="source:CACAO_M_E49546_F9_scaffold_7 1 1436" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23173174..23174604) /locus_tag="TCM_045218" /note="dbxref CacaoGD:Thecc1EG045218" mRNA complement(join(23173174..23173743,23174249..23174379, 23174450..23174604)) /locus_tag="TCM_045218" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc1287t1" CDS complement(join(23173722..23173743,23174249..23174379, 23174450..23174458)) /locus_tag="TCM_045218" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19846.1" /translation="MVKQILNSIWRSLLRVHFLFNPSLWRVIFEELGLHNRVKELGVL FERTKGDWA" mobile_element 23175402..23175728 /note="source:CACAO_M_E13038_F22_scaffold_3 13781 14116" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23175704..23177437) /locus_tag="TCM_045219" /note="dbxref CacaoGD:Thecc1EG045219" mRNA complement(join(23175704..23176119,23176575..23176623, 23176698..23177060,23177162..23177437)) /locus_tag="TCM_045219" /product="Ankyrin repeat-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045179t1" /inference="similar to AA sequence:frave:gene21767" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6086t2" CDS complement(join(23175968..23176119,23176575..23176623, 23176698..23177060,23177162..23177341)) /locus_tag="TCM_045219" /note="dbxref frave:gene21767; paralog of Thecc1EG045179t1" /codon_start=1 /product="Ankyrin repeat-containing protein" /protein_id="EOY19847.1" /translation="MNPIYHMRVELELELELKLKLKQEMNLKQEIKKVPGPRICAFVK DDGIPIILGSLLLICLRERKDFMQGLPLYKATLNGDREMTKQIQNQNEGTLLRSSLTE GHETALHVAVGARQAAVVKELVGRMESADLELRDGRGNIALCVAVATGSVKIAKILME KNAELAFIRGADDKTPLYIAAEEQRDMFLACIHAGLFDLAIKMLEVLRDLAWARNSDD ETALGILAPKPSAFAGESSTTPKTLIDKC" mobile_element complement(23185149..23188115) /note="source:CACAO_M_E70053_F312_scaffold_10 1 2967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23188291..23191216) /note="source:CACAO_M_E70051_F86_scaffold_10 1 2926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23192039..23195750) /note="source:INTACT114_F38_scaffold_10-int 892 4555" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23195752..23198448) /note="source:CACAO_M_S_E83969_F231_scaffold_6 1 2665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23199932..23200062 /note="source:INTACT643_F283_scaffold_2-int 178 304" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(23201845..23202650) /locus_tag="TCM_045223" /note="dbxref CacaoGD:Thecc1EG045223" mRNA complement(23201845..23202650) /locus_tag="TCM_045223" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026275t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS complement(23202195..23202482) /locus_tag="TCM_045223" /note="paralog of Thecc1EG026275t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19848.1" /translation="MSASTVTQQTTPIFDGSNYLVWAIRMKAFLKGVNLWNIVENETE APELRDNATPTQVKQYEEDIAKKFRALSFIHSTVIESVLSRIMGCETIKET" gene 23202710..23211853 /locus_tag="TCM_045224" /note="dbxref CacaoGD:Thecc1EG045224" mRNA join(23202710..23202770,23204783..23204853, 23204976..23205152,23205740..23206228,23207600..23207881, 23211533..23211853) /locus_tag="TCM_045224" /product="Ankyrin repeat-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045236t1" /inference="similar to AA sequence:frave:gene21767" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc364t8" mobile_element 23204095..23204176 /note="source:CACAO_M_E49559_F88_scaffold_7 7637 7729" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(23204808..23204853,23204976..23205152, 23205740..23206228,23207600..23207754) /locus_tag="TCM_045224" /note="dbxref frave:gene21767; paralog of Thecc1EG045236t1" /codon_start=1 /product="Ankyrin repeat-containing protein" /protein_id="EOY19849.1" /db_xref="TAIR:AT5G35830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BT79" /translation="MGFRAWLRQVLRTIQEKVDHFLGRGVRPEDEPNISGDNGTGTGT GSGNEESPQSPKSCICQRPWVPRQPSPHLPETNKEFYVEQGVPLYRATLNGDREKLQQ ILNPYGRTLLCSSITGARETALHVAVEARQVAVVKELVGRMESGDLELQDGRGNTAFC VAAATGSVNIAKILMDENADLAFIRGAENRTPLYIAAVCGYPEMLRFLYKKFEPHIPC LHEEEQRGIFFACIRAGLFDLAIRMLEVLGDVLAWPPNDDEETALGILARTLSAFAGK SSTTLKTPIDMC" mobile_element complement(23212999..23213439) /note="source:INTACT174_F38_scaffold_5-int 477 937" /mobile_element_type="retrotransposon:LTR/Copia" gene 23214459..23216643 /locus_tag="TCM_045226" /note="dbxref CacaoGD:Thecc1EG045226" mRNA join(23214459..23215055,23215344..23215795, 23215952..23216643) /locus_tag="TCM_045226" /product="Ankyrin repeat family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045236t2" /inference="similar to AA sequence:frave:gene21766" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00389t00001" CDS join(23215367..23215795,23215952..23216611) /locus_tag="TCM_045226" /note="dbxref frave:gene21766; paralog of Thecc1EG045236t2" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY19850.1" /db_xref="TAIR:AT5G35810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BT79" /translation="MQHNALKLTKLLCETMTSDQRKSYEETTDHASKLLFEAARLGNY NFLTVLVGFFPDLIFRKDEKRKSIFHIAVLHRHAGIFTHIHNLGLRKDLIMLYRVNYS DQENPIVYNMLHLAAKLPSLDRLNIVSGAALQMQRELLWFKEVENLTPPSEREMRDSK DELTPQELFTKEHEELRKAGETWMKKTAEAGMIVATIITTVVFTTASSLPGGTDGGDG SPKNKDKTMFHVFAVADSVAMCSSIVSTMMFLSILTSRYAEKDFLVRLPLKLAAAVTT LLVSMMALMVSFSAIYFLVYCQSKLKWVPILASALSFLPAALFVLLQYHLLPDVFRSA FGSRYIFRPNKSTFWESFNKIFNENVSN" mobile_element 23216639..23217359 /note="source:INTACT230_F178_scaffold_3-int 1 712" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23217409..23218382 /locus_tag="TCM_045227" /note="dbxref CacaoGD:Thecc1EG045227" mRNA 23217409..23218382 /locus_tag="TCM_045227" /product="Zinc finger, CCHC-type-like protein" /inference="alignment:exonerate-protein:2:frave:gene03523" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040687t1" /inference="similar to AA sequence:Phytozome:Sb07g007880.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 23217527..23218216 /locus_tag="TCM_045227" /note="paralog of Thecc1EG040687t1" /codon_start=1 /product="Zinc finger, CCHC-type-like protein" /protein_id="EOY19851.1" /db_xref="Phytozome:Sb07g007880.1" /translation="MEDINEKWKNFKLSKDEISQLRITRSMESGLTQSQKCYYLIGSV WEGKKVNKDAMVRTLCNLWKSKGNLTIKEIQENIFLFRFEDKEDYERIREGRPWCFDR NIVVLKEFDEVFMEPEDVDYGKEEFWIHILGLPTRFMEREVACAIGNTIARFIKVDGE NTGLRDKFMRIKVLLDLAKPLRRGLMLSMEENHVKWITLQYESLPQFCFKCGRMGHIE SNCAYQCMDEN" mobile_element 23220716..23221125 /note="source:INTACT174_F38_scaffold_5-int 479 890" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23222473..23222966 /note="source:INTACT174_F38_scaffold_5-int 2087 2562" /mobile_element_type="retrotransposon:LTR/Copia" assembly_gap 23226357..23236356 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(23237151..23241791) /note="source:INTACT114_F38_scaffold_10-int 1 4641" /mobile_element_type="retrotransposon:LTR/Copia" gene 23245107..23246040 /locus_tag="TCM_045229" /note="dbxref CacaoGD:Thecc1EG045229" mRNA 23245107..23246040 /locus_tag="TCM_045229" /product="Sulfotransferase 2A, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025825t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011259001" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc1113t10" CDS 23245258..23245785 /locus_tag="TCM_045229" /note="paralog of Thecc1EG025825t1" /codon_start=1 /product="Sulfotransferase 2A, putative" /protein_id="EOY19852.1" /db_xref="Phytozome:GSVIVT01011259001" /db_xref="TAIR:AT5G07010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TXM0" /translation="MDTTEMISEDIVSIVSQDKEEPWGDDEFEELVKTLPKEKNWYGT HLYFYQGFWCPSSVFRAMISFKKHFHALDSDIFLPSIPKSGTTWLKALTFSINSQWKK IPCSAQDLTNLFHSFEYDLYLKNPCPDLENSYPYQPRIVSTHAPFAFLPPSLKDSNSK IVYICRNPMDLFISL" gene 23246167..23249647 /locus_tag="TCM_045230" /note="dbxref CacaoGD:Thecc1EG045230" mRNA join(23246167..23246378,23246777..23246805, 23247239..23247802,23248132..23248262,23248413..23248512, 23248689..23248824,23248912..23249647) /locus_tag="TCM_045230" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc1113t5" CDS join(23246184..23246378,23246777..23246805, 23247239..23247802,23248132..23248262,23248413..23248512, 23248689..23248824,23248912..23249250) /locus_tag="TCM_045230" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19853.1" /translation="METNNRRFRSKGLTLHSDAAIEKVDGTTRVGAVFIIRRPNGGFL CAARRKMKCCESVEEAELRALVCPTGFTMISALQAAELRISARDEVSGEKALLAKNKS KENFEVFTRKNFKEKEKKATQSSQSSNRKGRLKLCSYSKKRNHTNEHCWLKPDAKCKI CSQLGHIDRVCKNKAIEDKSAQPNENSELTEEVLITAQTNLESDIKNSEWLLDSSNSR HITPFEAVFVDLDKNYQSKVKIGHGIYLHAYCKGKVHMQTSTGHSMLCQLGKISKKPF PSVSYSQAKCKLELLHFDVGGPISEESLNGSMEVSIPLMNSHNFLNKKGYSVNLLLLT LLSKMEPSVAHLKVFGCVCYVHIPKSLRDTLHQKVESGVFIGFNTQAKAYEPQPVTFI HHIQTFTAKDQVEIERDENIDDQLVMGTRSVIEEPSCYAKASWGPVWSKAMQEELQII HKNGTWSLVDRPANRNTIGVKWIFKKELNPYGSLNKCKARLMAKGYS" gene complement(23249904..23251150) /locus_tag="TCM_045231" /note="dbxref CacaoGD:Thecc1EG045231" mRNA complement(join(23249904..23250838,23250946..23251150)) /locus_tag="TCM_045231" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene07612" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(23250140..23250838,23250946..23251059)) /locus_tag="TCM_045231" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19854.1" /translation="MRRQSDPTVKMGARCTAATQSTLVTLSQLTEEKRILLKRFLHDG SLINPSLTADHLKMEDEDIIDVIAWAKFTVTGATQSTLVTLSELTQGKRIFLKVQGQK DCYLIGRKTPLSELMLDYTQRIGAAYGSLRFLYDGSRIHSKETADDLQMKDEDIITWA KRSLRVATPSTVISLPRMYNEKPIVLGMWDSSKDDHQLFYWIGRHTPLHNLMLDYCDR NGAFYDNVRFNYFGKSIKPNETTDDLEIEDGDCIDVYHAYFGCVRCPFSYFA" gene 23262155..23263132 /locus_tag="TCM_045233" /note="dbxref CacaoGD:Thecc1EG045233" mRNA join(23262155..23262489,23262637..23263132) /locus_tag="TCM_045233" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045241t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(23262340..23262489,23262637..23262876) /locus_tag="TCM_045233" /note="paralog of Thecc1EG045241t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19855.1" /translation="MLDCTQRLSVAFNSKKFLYNSSHINPISTVDHLKMEDEDIIDVI PWAKFKLCNLMLDYCDQTGVVFDDMRFLLNGSRMNIDKTADDLGLEDEELIEVFCFML GGSSPRTVPTLDVKIIALNFSNMENEG" mobile_element complement(23265652..23271096) /note="source:CACAO_M_S_E119911_F281_scaffold_10 374 7019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23271101..23274537) /note="source:INTACT114_F38_scaffold_10-int 1 3461" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23279357..23279992 /note="source:INTACT399_F75_scaffold_3-int 1 641" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23280080..23280159 /note="source:INTACT1604F_F75_scaffold_10-int 1989 2069" /mobile_element_type="retrotransposon:LTR/Copia" gene 23280264..23323683 /locus_tag="TCM_045236" /note="dbxref CacaoGD:Thecc1EG045236" mRNA join(23280264..23280431,23295634..23295974, 23296804..23297161,23302920..23302977,23305498..23305529, 23308095..23308165,23308288..23308464,23309049..23309534, 23310918..23311028,23318065..23318513,23318670..23319227, 23323165..23323683) /locus_tag="TCM_045236" /product="Ankyrin repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g17230.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045179t1" /inference="similar to AA sequence:frave:gene21767" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6106t2" mobile_element 23281218..23282003 /note="source:CACAO_Again_on_E100_scaffold_4 1 770" /mobile_element_type="transposon:TIR/hAT" mobile_element 23282045..23282192 /note="source:CACAO_Again_on_E100_scaffold_4 4661 4805" /mobile_element_type="transposon:TIR/hAT" mobile_element 23282262..23282361 /note="source:INTACT1604F_F75_scaffold_10-int 3105 3204" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23282379..23283367 /note="source:INTACT1604F_F75_scaffold_10-int 3283 4269" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23283368..23283721) /note="source:CACAO_M_E58877_F5_scaffold_9 20409 20735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23283534..23284063) /note="source:CACAO_M_E52694_F25_scaffold_8 4542 5093" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23295067..23296620) /note="source:CACAO_M_E58877_F5_scaffold_9 8266 9827" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(23295938..23295974,23296804..23297161, 23302920..23302977,23305498..23305529,23308095..23308165, 23308288..23308464,23309049..23309534,23310918..23311028, 23318065..23318513,23318670..23319227,23323165..23323206) /locus_tag="TCM_045236" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene21767; paralog of Thecc1EG045179t1" /codon_start=1 /product="Ankyrin repeat family protein isoform 1" /protein_id="EOY19856.1" /db_xref="TAIR:AT3G54070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BT79" /translation="MNSELRKTRDQKCVREGESADCRQGFAAGARERSTERRNRERGA AAGARERSTERRNRERNGGRRKGRKSEPSVTTSDPVKGERQDTGSHSRRKRGESSIRV VDEKIERERERRSRGTRSGNDAVPATVRIGCEELVSSHTEAYATCRLYQTPKTLLQAY SSLTSDIERSMGFWAWLRQVTRMIQGKVDHLPVRGVRPEDKPNTSGDSGTGTGTGSGN EGCPQSPTSCICQRPWVPRQPSPHLPETNKEFYVEQGVPLLRATLNGDREKVQQILNQ ADNLLCASITEAHETALHVAVGARQVAVVEELVRKMVSGDLELQDGRGNTAFCVAVAT GSVKIAEILMARHEELAFIRGANNKTPLYIAAVFGYPEMVRFLYKKFEPHIPFLNEEE QRRIFFACIQAGLFDLAITMLEVLGDVLTWARNADEETALEILARKPSAFAGFGSNTI NMQHSALKLTNLLCQKMASDQGISYEETTDHASESLFEAARLGNYNFLAALIGSFPDL IFRKDEKNRSIFHIAVLQRRASIFNHIHKLGLQKDLIMLYRVRDQENPSIFYNMLHLA AKLPSLDRLNIVSGAALQMQRELLWFKEVENLTTPSERAQRDSEDNLTPQELFTKEHE ELRKAGETWMKKTAESGMIVATIITTVVFTTASSLPGGTDDGDGSPKNKDKTMFHVFA VADSVAMCSSIISTIMFLLILTSRYAEKDFLVRLPLQLAAGITTLLVSMMALMVSFSA IYFLAYCQSKLKWVPILASAMSFLPAALFVLLQCRLLRDKADGADAFFCSLG" mobile_element complement(23296609..23297059) /note="source:CACAO_M_E52694_F25_scaffold_8 4542 5014" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23297436..23299245) /note="source:CACAO_M_E49539_F76_scaffold_7 3110 4892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23299246..23300526 /note="source:INTACT1604F_F75_scaffold_10-int 4265 5568" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23301932..23306197) /note="source:INTACT114_F38_scaffold_10-int 5 4239" /mobile_element_type="retrotransposon:LTR/Copia" mRNA join(23308008..23308165,23308288..23308464, 23309073..23309534,23310918..23311028,23318065..23318513, 23318670..23319599) /locus_tag="TCM_045236" /product="Ankyrin repeat family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g17230.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045179t1" /inference="similar to AA sequence:frave:gene21766" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6106t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6106t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc353t8" CDS join(23308120..23308165,23308288..23308464, 23309073..23309534,23310918..23311028,23318065..23318513, 23318670..23319329) /locus_tag="TCM_045236" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene21766; paralog of Thecc1EG045179t1" /codon_start=1 /product="Ankyrin repeat family protein isoform 2" /protein_id="EOY19857.1" /db_xref="TAIR:AT3G54070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICR0" /translation="MGFWAWLRQVTRMIQGKVDHLPVRGVRPEDKPNTSGDSGTGTGT GSGNEGCPQSPTSCICQRPWVPRQPSPHLPEQGVPLLRATLNGDREKVQQILNQADNL LCASITEAHETALHVAVGARQVAVVEELVRKMVSGDLELQDGRGNTAFCVAVATGSVK IAEILMARHEELAFIRGANNKTPLYIAAVFGYPEMVRFLYKKFEPHIPFLNEEEQRRI FFACIQAGLFDLAITMLEVLGDVLTWARNADEETALEILARKPSAFAGFGSNTINMQH SALKLTNLLCQKMASDQGISYEETTDHASESLFEAARLGNYNFLAALIGSFPDLIFRK DEKNRSIFHIAVLQRRASIFNHIHKLGLQKDLIMLYRVRDQENPSIFYNMLHLAAKLP SLDRLNIVSGAALQMQRELLWFKEVENLTTPSERAQRDSEDNLTPQELFTKEHEELRK AGETWMKKTAESGMIVATIITTVVFTTASSLPGGTDDGDGSPKNKDKTMFHVFAVADS VAMCSSIISTIMFLLILTSRYAEKDFLVRLPLQLAAGITTLLVSMMALMVSFSAIYFL AYCQSKLKWVPILASAMSFLPAALFVLLQCRLLRDVFRSTFCSRCIFRPNKSTFWESF NKIFNENVSN" mobile_element complement(23311383..23313049) /note="source:scaffold_5_CACTA_0615 491 2265" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23319357..23320174 /note="source:INTACT230_F178_scaffold_3-int 1 775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23320156..23323177) /note="source:INTACT177_F35_scaffold_3-int 943 3979" /mobile_element_type="retrotransposon:LTR/Copia" gene 23324302..23325425 /locus_tag="TCM_045239" /note="dbxref CacaoGD:Thecc1EG045239" mRNA 23324302..23325425 /locus_tag="TCM_045239" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 23325028..23325225 /locus_tag="TCM_045239" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19858.1" /translation="MGFSSFTLGKEIRVDLVAPLPEELVRAITSMISSSFISKSSAVS FGFKQQSLYKNLLELNVTPLR" mobile_element complement(23329397..23329500) /note="source:CACAO_M_S_E17777_F2_scaffold_3 783 891" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23338935..23339865 /locus_tag="TCM_045241" /note="dbxref CacaoGD:Thecc1EG045241" mRNA join(23338935..23339270,23339418..23339576, 23339646..23339865) /locus_tag="TCM_045241" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045233t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(23338938..23339270,23339418..23339576, 23339646..23339726) /locus_tag="TCM_045241" /note="paralog of Thecc1EG045233t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19859.1" /translation="MKRQSDPTVKMSNRCTTATQSTLITLSQWTEGKRILLKVHGRNE ADQIWYLMGQKTQLCELMLDCTQRLSVAFNSKKFLYNSSHIHPISTVDHLKMEDEDII DVIPWAKFKLCNLMLDYCDQTGVVFDDMRFLLNGSRINIDKTADDLGLEDEELIEVFC FMLGXXXXXXXXXXXVKIIALNFSNMENGG" mobile_element 23344830..23346501 /note="source:CACAO_M_E48452_F5_scaffold_6 7170 8823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23353953..23354015 /note="source:INTACT19F_F94_scaffold_1-int 6554 6618" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23359031..23360170) /locus_tag="TCM_045243" /note="dbxref CacaoGD:Thecc1EG045243" mRNA complement(23359031..23360170) /locus_tag="TCM_045243" /product="Small basic intrinsic protein 1" /inference="alignment:exonerate-protein:2:frave:gene23951" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026035t1" /inference="similar to AA sequence:ricco:30010.m000659" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6281t1" CDS complement(23359246..23359974) /locus_tag="TCM_045243" /note="dbxref ricco:30010.m000659; paralog of Thecc1EG026035t1" /codon_start=1 /product="Small basic intrinsic protein 1" /protein_id="EOY19860.1" /db_xref="TAIR:AT3G04090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q107W9" /translation="MGVIKAAIGDALLTSMWVFSMPTLRIFTGKIATFLGVQALPLAP LFITTILVSCLVFLFSLIGEALGGASFNPTASLTFYAAGLKKNSSLLSMAVRFPAQAA GGVAGVKAILQVIPGEYKKFIKGPSLNVDLHTGAIAEGVLTFGLSLALLVILVRGPKN PLIKLWLMAASTVGLVTTGSKYTGPSMNPANAFGWAYQNNWHNSWELYYVYWIGPLTG ATLAAWVFRFLLSPPPPPSKEKKA" mobile_element complement(23362493..23365085) /note="source:CACAO_M_S_E119910_F74_scaffold_10 1 2593" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23372825..23373804 /locus_tag="TCM_045246" /note="dbxref CacaoGD:Thecc1EG045246" mRNA join(23372825..23373007,23373109..23373379, 23373493..23373804) /locus_tag="TCM_045246" /product="Two-component response regulator ARR8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024355t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19710.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12728t00001" CDS join(23372905..23373007,23373109..23373379, 23373493..23373685) /locus_tag="TCM_045246" /note="paralog of Thecc1EG024355t1" /codon_start=1 /product="Two-component response regulator ARR8" /protein_id="EOY19861.1" /db_xref="Phytozome:POPTR_0003s19710.1" /db_xref="TAIR:AT3G57040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHS4" /translation="MGMATEAQFHVLAVDDSLIDRKLIERLLKTSSYHVTAVDSGSKA LEFLGLNGSHEDGQRNPSPASVSLDEDQHQQDVEVNLIITDYCMPGMTGYDLLRRIKG SSSFKDIPVVIMSSENIPSRINRCLEDGAEEFFLKPVQLSDVNKLRPHLMKGRSKEMQ QNISKRKGMEEILTPDRTRTRYNELEVV" gene complement(23374275..23377543) /locus_tag="TCM_045247" /note="dbxref CacaoGD:Thecc1EG045247" mRNA complement(join(23374275..23374737,23374836..23374938, 23376146..23376283,23376374..23376471,23377124..23377329, 23377418..23377543)) /locus_tag="TCM_045247" /product="Ribosomal protein L30/L7 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s17910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040993t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s17910.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6326t1; alternateUTRof:Thecc1EG045247t1; inference alignment:Newbler:10:TSA:cgbaB_g03904t00001" mRNA complement(join(23374376..23374737,23374836..23374938, 23376146..23376283,23376374..23376471,23377124..23377329, 23377414..23377543)) /locus_tag="TCM_045247" /product="Ribosomal protein L30/L7 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s17910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040993t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s17910.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03904t00001; inference alignment:Newbler:10:TSA:cgbaB_g03904t00001" CDS complement(join(23374522..23374737,23374836..23374938, 23376146..23376283,23376374..23376471,23377124..23377321)) /locus_tag="TCM_045247" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040993t2" /codon_start=1 /product="Ribosomal protein L30/L7 family protein isoform 1" /protein_id="EOY19862.1" /db_xref="Phytozome:POPTR_0003s17910.1" /db_xref="TAIR:AT1G80750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SAI5" /translation="MAEEEGQPMPYVSEVVLKKRKIKDELAITRKTQLELGKYGAKKS KKQSDVSDIKRPEQFIKEFRAQELDLIRLKQRAKRPKSMISKPRSKLLFVIRIQGKND MHPKTRKILYNLRLRRVFSGIFVKATEGVIEMLQKVEPYVTYGYPNLKNVKELIYKKG YARIDKKAVPLTDNNIIEQELGKYGIICLEDIVHEIANVGPHFKEVNHFMGPLMLSKP GGVIQGKKQPYREGGDAGNREDEINDLISKMN" CDS complement(join(23374522..23374737,23374836..23374938, 23376146..23376283,23376374..23376471,23377124..23377321)) /locus_tag="TCM_045247" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040993t2" /codon_start=1 /product="Ribosomal protein L30/L7 family protein isoform 1" /protein_id="EOY19863.1" /db_xref="Phytozome:POPTR_0003s17910.1" /db_xref="TAIR:AT1G80750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SAI5" /translation="MAEEEGQPMPYVSEVVLKKRKIKDELAITRKTQLELGKYGAKKS KKQSDVSDIKRPEQFIKEFRAQELDLIRLKQRAKRPKSMISKPRSKLLFVIRIQGKND MHPKTRKILYNLRLRRVFSGIFVKATEGVIEMLQKVEPYVTYGYPNLKNVKELIYKKG YARIDKKAVPLTDNNIIEQELGKYGIICLEDIVHEIANVGPHFKEVNHFMGPLMLSKP GGVIQGKKQPYREGGDAGNREDEINDLISKMN" misc_feature complement(join(23374715..23374737,23374836..23375714)) /locus_tag="TCM_045247" /note="Gene fragment of Thecc1EG045247t1; dbxref gnl|CacaoGD|Thecc1EG045247t1; quality class is mediumpartial-partof is thecc1eg045247t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc386t5; dbxref CacaoGD:Thecc1EG045248t1" gene 23378666..23387376 /locus_tag="TCM_045249" /note="dbxref CacaoGD:Thecc1EG045249" mRNA join(23378666..23379306,23380430..23380516, 23382081..23382170,23383057..23383251,23383334..23385472, 23385705..23385851,23386122..23386504,23386768..23387376) /locus_tag="TCM_045249" /product="Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 2" /inference="alignment:exonerate- protein:2:ricco:30131.m007201" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040948t1" /inference="similar to AA sequence:ricco:30131.m007201" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b043642t1a3; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8133t5" mRNA join(23378666..23379306,23380430..23380516, 23382081..23382170,23382815..23382895,23383057..23383251, 23383334..23385472,23385705..23385851,23386122..23386504, 23386768..23386985,23387137..23387255) /locus_tag="TCM_045249" /product="Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007201" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040948t1" /inference="similar to AA sequence:ricco:30131.m007201" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8133t5" CDS join(23379226..23379306,23380430..23380516, 23382081..23382170,23382815..23382895,23383057..23383251, 23383334..23385472,23385705..23385851,23386122..23386504, 23386768..23386900) /locus_tag="TCM_045249" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m007201; paralog of Thecc1EG040948t1" /codon_start=1 /product="Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 1" /protein_id="EOY19864.1" /db_xref="TAIR:AT5G19420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K148" /translation="MLKTERMATVTAEQSRVAGVPERDIELAITALKKGAPLLKYGRR GKPKFCPFRLSNDESVLIWISGKEEKYLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSF SLIYNDRSLDLICKDKDEAEVWFTGLKALISRGHHRKGRAESRSDGVSSEATSPRAHT QRSSPLSSPFGSGGSSQKDGMDPLRLHTPHESPPKTGLEKALSDVILYSVPPKVLYPS ESACGSIHSLSSAGSDGAAGRIKAVNGDAFRVSLSSAVSSSSQGSGQYDGDALGDVFI WGEGTGDGVLGGGIHRTGNSGGVKIDSLLPKALESAVVLDVQNIACGGQHAALVTKQG EVFSWGEECGGRLGHGVDSDVSHPKLIDSLKNINVELVACGEYHSCAVTLSGEMYSWG GSSCNFGLLGHGHETSQWVPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGT FGVLGHGDRKSVSVPREVESLKGLRTVRASCGVWHTAAVVEVMVGSSSSSNCSSGKLF TWGDGDKGRLGHGDKEARLVPTCVAALVEPNFCRVVCGHSMTVALTTNGHVYTMGSPV YGQLGNSQADGKHPVRVEGKLTKNFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGH GDTDDRSSPCLVEALKDKQVKSIVCGTSFTAAICLHKSVSSIDQSKCSGCRLLFNFKR KRHNCYNCGLVFCNSCSSKKSFKASMAPNPNKPYRVCDNCFAKLTKASETNSSTHYAL SRRGSMNQGLNEGVEKTEKLDSRTHAQLSRNGSIESSKELEGGSSKRNKRLDFYSTRV SPFPNGVSQCAPQNSSKTSNALFGSSKKFFSASLPGSRIVSRATSPTSRRSSPPRATT PTPTLSGFASMKVVVDDAKRTNDGLSEEVIKLRTQVEELTLKAQLQEVELERTTKQLK EAIAVAAEETAKSKAAKEVIKSLTAQLKDMAERLPIGAARSSNSPSFCYSSSTPPREV SSAGNEQLGGPMSCHEIDSNGSNSLVISNGSGTSNQHLSIHTEVSHLDGTARNRNRTT KVEPTHGDEWVEQDEPGVYITLVALPGGVKDLKRVRFSRKRFSEKQAEQWWAANRARV YQRYNVPLVDKPSVGVGREGLAH" CDS join(23379226..23379306,23380430..23380516, 23382081..23382170,23383057..23383251,23383334..23385472, 23385705..23385851,23386122..23386504,23386768..23386900) /locus_tag="TCM_045249" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m007201; paralog of Thecc1EG040948t1" /codon_start=1 /product="Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 2" /protein_id="EOY19865.1" /db_xref="TAIR:AT5G19420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K148" /translation="MLKTERMATVTAEQSRVAGVPERDIELAITALKKGAPLLKYGRR GKPKFCPFRLSNDESVLIWISGKEEKYLKLSHVSRIIPGQRTICKDKDEAEVWFTGLK ALISRGHHRKGRAESRSDGVSSEATSPRAHTQRSSPLSSPFGSGGSSQKDGMDPLRLH TPHESPPKTGLEKALSDVILYSVPPKVLYPSESACGSIHSLSSAGSDGAAGRIKAVNG DAFRVSLSSAVSSSSQGSGQYDGDALGDVFIWGEGTGDGVLGGGIHRTGNSGGVKIDS LLPKALESAVVLDVQNIACGGQHAALVTKQGEVFSWGEECGGRLGHGVDSDVSHPKLI DSLKNINVELVACGEYHSCAVTLSGEMYSWGGSSCNFGLLGHGHETSQWVPKKLNGPL EGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSVPREVESLKGLRTV RASCGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGDKEARLVPTCVAAL VEPNFCRVVCGHSMTVALTTNGHVYTMGSPVYGQLGNSQADGKHPVRVEGKLTKNFVE EIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRSSPCLVEALKDKQVKSIVCGT SFTAAICLHKSVSSIDQSKCSGCRLLFNFKRKRHNCYNCGLVFCNSCSSKKSFKASMA PNPNKPYRVCDNCFAKLTKASETNSSTHYALSRRGSMNQGLNEGVEKTEKLDSRTHAQ LSRNGSIESSKELEGGSSKRNKRLDFYSTRVSPFPNGVSQCAPQNSSKTSNALFGSSK KFFSASLPGSRIVSRATSPTSRRSSPPRATTPTPTLSGFASMKVVVDDAKRTNDGLSE EVIKLRTQVEELTLKAQLQEVELERTTKQLKEAIAVAAEETAKSKAAKEVIKSLTAQL KDMAERLPIGAARSSNSPSFCYSSSTPPREVSSAGNEQLGGPMSCHEIDSNGSNSLVI SNGSGTSNQHLSIHTEVSHLDGTARNRNRTTKVEPTHGDEWVEQDEPGVYITLVALPG GVKDLKRVRFSRKRFSEKQAEQWWAANRARVYQRYNVPLVDKPSVGVGREGLAH" mobile_element complement(23386797..23387056) /note="source:scaffold_5_CACTA_0600 7042 7296" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23387154..23387246) /note="source:scaffold_5_CACTA_0600 6960 7046" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23387226..23387305) /note="source:scaffold_5_CACTA_0600 6466 6561" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23387408..23387651 /note="source:scaffold_9_CACTA_0946 17761 18011" /mobile_element_type="transposon:TIR/CACTA" gene complement(23387872..23388730) /locus_tag="TCM_045250" /note="dbxref CacaoGD:Thecc1EG045250" mRNA complement(23387872..23388730) /locus_tag="TCM_045250" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045251t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage" CDS complement(23388227..23388640) /locus_tag="TCM_045250" /note="paralog of Thecc1EG045251t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19866.1" /translation="MAPKIAAVSLNPEIIIPETTYLDNGLVYISDAAQHSGKLTYKNY WTWQAQFKALLNGFDLLGYVDGSKQCPPATVMKNNQAASNPDYVLWYRQDQLVLHAIL TCISQEDLLYKLVAKRTGVETAEAAWNMISRILEH" gene complement(23389714..23391070) /locus_tag="TCM_045251" /note="dbxref CacaoGD:Thecc1EG045251" mRNA complement(23389714..23391070) /locus_tag="TCM_045251" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045250t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(23390560..23390886) /locus_tag="TCM_045251" /note="paralog of Thecc1EG045250t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19867.1" /translation="MAADKVPANVSAGTTYLDNGLIYINSAAILSVKLTTTNYSGRRA QFKALLRGYGLIGYVDGSKPCPVPLPPRKRRSGSRDTVYELWKRQDQLVLLAILTSLS EEWLPR" gene 23392305..23394724 /locus_tag="TCM_045252" /note="dbxref CacaoGD:Thecc1EG045252" mRNA join(23392305..23392578,23393693..23394724) /locus_tag="TCM_045252" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.20 coverage" CDS join(23392515..23392578,23393693..23393871) /locus_tag="TCM_045252" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19868.1" /translation="MANITKSCPEVELKLMVMHSKESSPRQREATILMIKKLKWLVTR ARLGDSIAHSLYLSSLSTSSNLGVEEDTAWSHRHSL" mobile_element complement(23393013..23393076) /note="source:scaffold_9_CACTA_0942 4896 4959" /mobile_element_type="transposon:TIR/CACTA" gene complement(23394163..23402896) /locus_tag="TCM_045253" /note="dbxref CacaoGD:Thecc1EG045253" mRNA complement(join(23394163..23394185,23394550..23395034, 23395329..23395476,23395886..23396000,23396685..23396815, 23396905..23396964,23397055..23397342,23397429..23397642, 23397742..23400360,23401968..23402896)) /locus_tag="TCM_045253" /product="SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007203" /inference="similar to AA sequence:ricco:30131.m007203" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc491t10" mRNA complement(join(23394681..23395180,23395330..23395476, 23395886..23396000,23396685..23396815,23396905..23396964, 23397055..23397342,23397429..23397642,23397742..23400360, 23401968..23402521)) /locus_tag="TCM_045253" /product="SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007203" /inference="similar to AA sequence:ricco:30131.m007203" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc498t2; alternateUTRof:Thecc1EG045253t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc491t10" mRNA complement(join(23395001..23395034,23395329..23395476, 23395886..23396000,23396685..23396815,23396905..23396964, 23397055..23397342,23397429..23397642,23397742..23400360, 23400681..23400741)) /locus_tag="TCM_045253" /product="SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30131.m007203" /inference="similar to AA sequence:ricco:30131.m007203" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc491t6; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc491t10" CDS complement(join(23395330..23395476,23395886..23396000, 23396685..23396815,23396905..23396964,23397055..23397342, 23397429..23397642,23397742..23400360,23401968..23402437)) /locus_tag="TCM_045253" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m007203" /codon_start=1 /product="SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein, putative isoform 1" /protein_id="EOY19869.1" /db_xref="TAIR:AT3G54460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1I1" /translation="MDETVPDHKLCGYLCTVLAVPSQSVTTTIPFSTPCHLTTDDDGN ICFRSQNGVVLSVIRNGHASNHDNAGSSRKKGGRRRIGMVNGSMSVVHQFHALVAHKC VKIYARVLRVEESGEEEEEARAVVLVDVYLPIELWAGWQFPRSGSVAGSLFRHLSCDW KERSLMLNNGTEFGMDAHGNVRSIWSVSDCHVLGCKLHCNGVDPSNKRLYELHDIFKS LPSVINKGMTDSSRVQPAEDTHTSGIWDLADDILINILATLDPMGLTRVAATCRHLRS LAALIMPCMKLKLFPHQQAAVEWMLRRERSAEFLRHPLFMELSTEDGFSFYVNSVSGS IVTGMAPTIRDFRGGMFCDEPGLGKTITALSLILKTQGTMADPPEGVQIIWCTHNSND KCGYYELRGDEFTCNNMILGKRTLSQNALRVQSSLGKFSLKEETNHSLLKRARLMDPG ERSAEFNDSCFERRINSPSASYFEPVTWVVRSPRNLGHIRKNLLYAYDGLSASCKGKA VEKNAHIRNGSRHVYWGKQVGVSYGALDGCMRPGKATAGCTMCNETWVQCDACHKWRK LADSSIADAKVAWFCSMNTDPAYQSCTDPEEAWDNHESITYLPGFFTKGTAGGKEENV SFFISVLKEHYAVINSKTKKALIWLAKLSPERLFEMETVGLSSPILGTGVAEDALGFH KIFQAFGLIKRVEKGFCRWYYPRTLENLAFDLAALRIALCEPLDSVRLYLSRATLVVV PSNLVDHWKTQIQKHVRPGQLQLYVWTDQRKPPVHSLAWDYDIVITTFNRLSAEWGPR KRSALMQVHWLRVILDEGHTLGSSLNLTNKLQMAISLTASSRWLLTGTPTPNTPNSQL SHLQPLLKFLHEEAYGQNQKSWEAGILKPFEAKMEEGRSRLLQLLHRCMISARKIDLQ TIPPCIKKVTFVKFTDEHARSYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRST TIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQR CNEWCRLPVVTPCRHLLCLDCVGLDSKVCTLPGCGRLYEMQTPETLARPENPNPKWPV PKDLIELQPSYKQDDWNPDWQSTTSSKVAYLVERLKALQEVNKEIRCSMDEDNDAKHI DKLLWPSQRSNMGVPLLQNCSRHGKESYKTLPQKVLIFSQFLEHIHVIEQQLTFAGIK FAGMYSPMHSSNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSM EEQVISRAHRMGATRPIHVETLAMSGTIEEQMLEFLQDADACRKFLKEESQRPDREGS RTRRTLHDFAESNYLARLSFVHRNSVS" CDS complement(join(23395330..23395476,23395886..23396000, 23396685..23396815,23396905..23396964,23397055..23397342, 23397429..23397642,23397742..23400360,23401968..23402437)) /locus_tag="TCM_045253" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m007203" /codon_start=1 /product="SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein, putative isoform 1" /protein_id="EOY19870.1" /db_xref="TAIR:AT3G54460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1I1" /translation="MDETVPDHKLCGYLCTVLAVPSQSVTTTIPFSTPCHLTTDDDGN ICFRSQNGVVLSVIRNGHASNHDNAGSSRKKGGRRRIGMVNGSMSVVHQFHALVAHKC VKIYARVLRVEESGEEEEEARAVVLVDVYLPIELWAGWQFPRSGSVAGSLFRHLSCDW KERSLMLNNGTEFGMDAHGNVRSIWSVSDCHVLGCKLHCNGVDPSNKRLYELHDIFKS LPSVINKGMTDSSRVQPAEDTHTSGIWDLADDILINILATLDPMGLTRVAATCRHLRS LAALIMPCMKLKLFPHQQAAVEWMLRRERSAEFLRHPLFMELSTEDGFSFYVNSVSGS IVTGMAPTIRDFRGGMFCDEPGLGKTITALSLILKTQGTMADPPEGVQIIWCTHNSND KCGYYELRGDEFTCNNMILGKRTLSQNALRVQSSLGKFSLKEETNHSLLKRARLMDPG ERSAEFNDSCFERRINSPSASYFEPVTWVVRSPRNLGHIRKNLLYAYDGLSASCKGKA VEKNAHIRNGSRHVYWGKQVGVSYGALDGCMRPGKATAGCTMCNETWVQCDACHKWRK LADSSIADAKVAWFCSMNTDPAYQSCTDPEEAWDNHESITYLPGFFTKGTAGGKEENV SFFISVLKEHYAVINSKTKKALIWLAKLSPERLFEMETVGLSSPILGTGVAEDALGFH KIFQAFGLIKRVEKGFCRWYYPRTLENLAFDLAALRIALCEPLDSVRLYLSRATLVVV PSNLVDHWKTQIQKHVRPGQLQLYVWTDQRKPPVHSLAWDYDIVITTFNRLSAEWGPR KRSALMQVHWLRVILDEGHTLGSSLNLTNKLQMAISLTASSRWLLTGTPTPNTPNSQL SHLQPLLKFLHEEAYGQNQKSWEAGILKPFEAKMEEGRSRLLQLLHRCMISARKIDLQ TIPPCIKKVTFVKFTDEHARSYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRST TIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQR CNEWCRLPVVTPCRHLLCLDCVGLDSKVCTLPGCGRLYEMQTPETLARPENPNPKWPV PKDLIELQPSYKQDDWNPDWQSTTSSKVAYLVERLKALQEVNKEIRCSMDEDNDAKHI DKLLWPSQRSNMGVPLLQNCSRHGKESYKTLPQKVLIFSQFLEHIHVIEQQLTFAGIK FAGMYSPMHSSNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSM EEQVISRAHRMGATRPIHVETLAMSGTIEEQMLEFLQDADACRKFLKEESQRPDREGS RTRRTLHDFAESNYLARLSFVHRNSVS" CDS complement(join(23395330..23395476,23395886..23396000, 23396685..23396815,23396905..23396964,23397055..23397342, 23397429..23397642,23397742..23400335)) /locus_tag="TCM_045253" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30131.m007203" /codon_start=1 /product="SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein isoform 3" /protein_id="EOY19871.1" /db_xref="TAIR:AT3G54460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1I1" /translation="MLNNGTEFGMDAHGNVRSIWSVSDCHVLGCKLHCNGVDPSNKRL YELHDIFKSLPSVINKGMTDSSRVQPAEDTHTSGIWDLADDILINILATLDPMGLTRV AATCRHLRSLAALIMPCMKLKLFPHQQAAVEWMLRRERSAEFLRHPLFMELSTEDGFS FYVNSVSGSIVTGMAPTIRDFRGGMFCDEPGLGKTITALSLILKTQGTMADPPEGVQI IWCTHNSNDKCGYYELRGDEFTCNNMILGKRTLSQNALRVQSSLGKFSLKEETNHSLL KRARLMDPGERSAEFNDSCFERRINSPSASYFEPVTWVVRSPRNLGHIRKNLLYAYDG LSASCKGKAVEKNAHIRNGSRHVYWGKQVGVSYGALDGCMRPGKATAGCTMCNETWVQ CDACHKWRKLADSSIADAKVAWFCSMNTDPAYQSCTDPEEAWDNHESITYLPGFFTKG TAGGKEENVSFFISVLKEHYAVINSKTKKALIWLAKLSPERLFEMETVGLSSPILGTG VAEDALGFHKIFQAFGLIKRVEKGFCRWYYPRTLENLAFDLAALRIALCEPLDSVRLY LSRATLVVVPSNLVDHWKTQIQKHVRPGQLQLYVWTDQRKPPVHSLAWDYDIVITTFN RLSAEWGPRKRSALMQVHWLRVILDEGHTLGSSLNLTNKLQMAISLTASSRWLLTGTP TPNTPNSQLSHLQPLLKFLHEEAYGQNQKSWEAGILKPFEAKMEEGRSRLLQLLHRCM ISARKIDLQTIPPCIKKVTFVKFTDEHARSYNELVVTVRRNILMADWNDPSHVESLLN PKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYN LLYGGNCQRCNEWCRLPVVTPCRHLLCLDCVGLDSKVCTLPGCGRLYEMQTPETLARP ENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTTSSKVAYLVERLKALQEVNKEIRCSM DEDNDAKHIDKLLWPSQRSNMGVPLLQNCSRHGKESYKTLPQKVLIFSQFLEHIHVIE QQLTFAGIKFAGMYSPMHSSNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFL MEPIWDRSMEEQVISRAHRMGATRPIHVETLAMSGTIEEQMLEFLQDADACRKFLKEE SQRPDREGSRTRRTLHDFAESNYLARLSFVHRNSVS" gene 23403430..23406443 /locus_tag="TCM_045255" /note="dbxref CacaoGD:Thecc1EG045255" mRNA join(23403430..23403580,23404794..23404831, 23406266..23406443) /locus_tag="TCM_045255" /product="Reactive oxygen species modulator 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s07620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01037255001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g14890t00001" CDS join(23403508..23403580,23404794..23404831, 23406266..23406379) /locus_tag="TCM_045255" /codon_start=1 /product="Reactive oxygen species modulator 1" /protein_id="EOY19872.1" /db_xref="Phytozome:GSVIVT01037255001" /translation="MARDSCLARVTAGAAVGGAVGGAVGAVYGTYEAIRYKVPGMLKI RYIGQTTLGSAAIFGLFLGAGSLIHCGKSY" gene complement(23406774..23418920) /locus_tag="TCM_045256" /note="dbxref CacaoGD:Thecc1EG045256" mRNA complement(join(23406774..23408227,23408289..23409424, 23412068..23412147,23413419..23413423,23415300..23415369, 23415565..23415654,23418838..23418920)) /locus_tag="TCM_045256" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s33870.1.2" /inference="similar to AA sequence:Phytozome:GSVIVT01033101001" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(join(23407706..23408227,23408289..23409424, 23412068..23412147,23413419..23413423,23415300..23415369, 23415565..23415650)) /locus_tag="TCM_045256" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY19873.1" /db_xref="Phytozome:GSVIVT01033101001" /db_xref="TAIR:AT3G27120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JEX5" /translation="MLLSNKGNVEILKDVWASLGPPKVEDFVWVAFSFFKAWNSCSIG VAKRKVCKVKRGIYFNVNFNSILIFHIRGFYLNEEFVVLKEENMDSNGNNSSTEKKTL TKQQAYSLLSSLSFCAEKSQEVLSKVQSSHASLLALALGTTICPSKVVPLSNQSCEIQ SVVLEVLDSLRKAKGVINDIMGSNATSRSGQSALLSLINQPSQVPPPLSINQVALPYP NIVPQQNQARLPSFSLNSSPMTNALGIPFLNYLHRPYQAALLPPSVHSQKKAAITHPF SIPQQNQATLLPSCSKIDPYRIDFPSSAQTMEYILNLTKLGTNVASTSSAVPTKKRAL EALYGSNNKLPERLEHLEPKLIKRIVSEIIDQDTIVKWDDIAGLEHAKNCVHETVLWP ILNPKIFQGVRSVRKGVLLFGPPGTGKTMIGKAIAGEMKATFFNISTVSLASKWLGDG EKLVRALFERSSITEHESIRRLKTQLLVEMEGIDSGTEQIIVIGATNKPQDLDEAARR RLSKRLYIPLPTAEARSHIVLNTMGKDGGNILEKKDLDLICNVTDGYSESDMKNLVNE AMMGPIREAIKEANNGKGICELKPEDLRPVSLKDFKNALKEVRPSVSKQELVAYVEWN AKFGSMLV" mobile_element complement(23411954..23412041) /note="source:scaffold_10_CACTA_0127 7381 7469" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23423094..23423188) /note="source:scaffold_10_CACTA_0137 6926 6999" /mobile_element_type="transposon:TIR/CACTA" gene complement(23425072..23434931) /locus_tag="TCM_045257" /note="dbxref CacaoGD:Thecc1EG045257" mRNA complement(join(23425072..23425816,23426370..23426618, 23427309..23427832,23428054..23428142,23428903..23428992, 23429540..23429618,23429848..23429911,23430016..23430103, 23430185..23430245,23430327..23430386,23430760..23430857, 23430933..23431004,23431126..23431208,23431313..23431408, 23432198..23432302,23432393..23432461,23433253..23433344, 23434564..23434931)) /locus_tag="TCM_045257" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30131.m007202" /inference="similar to AA sequence:ricco:30131.m007202" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6338t4" CDS complement(join(23425745..23425816,23426370..23426618, 23427309..23427832,23428054..23428142,23428903..23428992, 23429540..23429618,23429848..23429911,23430016..23430103, 23430185..23430245,23430327..23430386,23430760..23430857, 23430933..23431004,23431126..23431208,23431313..23431408, 23432198..23432302,23432393..23432461,23433253..23433344, 23434564..23434741)) /locus_tag="TCM_045257" /note="dbxref ricco:30131.m007202" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY19874.1" /db_xref="TAIR:AT5G13480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NLV4" /translation="MMYGDPQQQQNQPPPSQGGEFPRGPPPPPPQMMRQPSASSTTLN SEYHHPAPPQIPPYDAHGDNFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRT VLQPTPAAAIDVLPTAAYIDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGS QSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK FNKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH PTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQNGNWVLTAAKDQIIK LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSFDGSIFHWLVGHETPQVEIPN AHDNSVWDIAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFSMGQNQGYGEQNPAL AGRMPGNFAAPEGPTTPGPYAAGLTRNEGTIPGVGVPMPLSVPSLDGSAQGDQKQPLP GSMPFGAPPLPPGPHPSLLVANQQQGYQQNPQQMQQQQMPPMQMAPPNMSQLQPPSHM PLLPHPHLQRPPPQMPPIGMPSPVPSSMPGSLPPPSSMPTSHQMPMPGPMGMQGTMNQ MPPPMPQGHFMGMNPMHSGSLPNSGAPTVGGFPNGMQNMQGPANAGGGQMYPQGGAFN RAQGGQMPMMPGFNPYQSGGQSGLPPPPPPGPPPHGQTPQ" mobile_element complement(23430417..23430485) /note="source:CACAO_M_S_E18487_F233_scaffold_3 1275 1358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23430429..23430508 /note="source:CACAO_M_E44848_F172_scaffold_6 1899 1947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23430441..23430532 /note="source:scaffold_5_CACTA_0608 8761 8854" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23437060..23438073 /note="source:scaffold_8_CACTA_0857 6156 7137" /mobile_element_type="transposon:TIR/CACTA" gene complement(23440133..23441687) /locus_tag="TCM_045258" /note="dbxref CacaoGD:Thecc1EG045258" mRNA complement(join(23440133..23440637,23440751..23440810, 23441245..23441687)) /locus_tag="TCM_045258" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s02080.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02080.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" CDS complement(join(23440355..23440637,23440751..23440810, 23441245..23441537)) /locus_tag="TCM_045258" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19875.1" /db_xref="Phytozome:POPTR_0016s02080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BTQ0" /translation="MCLEEWACSHCCWVYLLYASHGMKPALILCAGRVLFFLKLMNVP NDSFQGRLMDTYIIEEFSATAFIKSMVDRSHGNATTLILPEPCSDEALEYVADKFWYF MSNKAIFSFPGVLAYRMSLPRSASTARTLVVLCASNARIEEDEALAIVTLLPKITHLF LEGESIEQKNLVTILQGCQQLVYLDVSDCIGFDEDDDEMLELASYITAFKC" mobile_element complement(23442356..23442934) /note="source:CACAO_M_E70032_F28_scaffold_10 1 579" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23444325..23448241 /locus_tag="TCM_045259" /note="dbxref CacaoGD:Thecc1EG045259" mRNA join(23444325..23444398,23445847..23447110, 23448213..23448241) /locus_tag="TCM_045259" /product="Sensitivity to red light reduced protein (SRR1), putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037424001" /inference="similar to AA sequence:ricco:29799.m000641" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03798t00001" CDS 23446011..23446874 /locus_tag="TCM_045259" /note="dbxref ricco:29799.m000641" /codon_start=1 /product="Sensitivity to red light reduced protein (SRR1), putative" /protein_id="EOY19876.1" /db_xref="TAIR:AT5G59560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWZ6" /translation="MVASAKVLTLENHTQNGEWTIVLPRRGRHRRNSQKITSMKGQQQ EQQPWVPTDLEIDPVRQSKLMNKIQICMKRVENSRFFLTFLDQMQCPEVLNHFHRILG SELKLQMVIYGIGSIESHETPRLQLSLAILMKRNFSWIGDIEVFDPVLSANESRVLEA LGCSVLSVNEQGRRQAMKPTLFFMPHCEAELYNNLLQANWGIESLNRVALFGNSFETY EQHVSFKYYEQEVSFMDSSVIESVTHILAARRFTDEFRTNTVSDDYFAAFHDSSWHFF RPGCENELQLN" gene 23449413..23450801 /locus_tag="TCM_045260" /note="dbxref CacaoGD:Thecc1EG045260" mRNA 23449413..23450801 /locus_tag="TCM_045260" /product="Glutaredoxin family protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G13810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024388t1" /inference="similar to AA sequence:ricco:30131.m007206" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07137t00001" CDS 23449583..23450401 /locus_tag="TCM_045260" /note="dbxref ricco:30131.m007206; paralog of Thecc1EG024388t1" /codon_start=1 /product="Glutaredoxin family protein" /protein_id="EOY19877.1" /db_xref="TAIR:AT5G13810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GCJ8" /translation="MAELEDNKAKSSSGSMFFNRSLTMHATAAESNPPKVHFLLNNPS LNRAASISKIYNSIDSVKGKVRKLCSLFESAKSSLSSSSLTASPKESVPKVVLRPAKS IGYSSSFSSSFNSPLIRLPGTEDRIVVYITSLRGIRRTYEDCYAVRMIFRGFRVWVDE RDISMDAAYRKELQSVLKEKNVSLPQVFIKGKYVGGADAIKSMFEVGELAKILDGFPR RQPGFVCEACGDVRFVPCGNCSGSRKVFDEDEGLLKRCLECNENGLIRCPDCCS" gene complement(23451751..23452791) /locus_tag="TCM_045261" /note="dbxref CacaoGD:Thecc1EG045261" mRNA complement(23451751..23452791) /locus_tag="TCM_045261" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.87 coverage" CDS complement(23451931..23452203) /locus_tag="TCM_045261" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19878.1" /translation="MDTSKSSCVRSFNIGVVVSVQGCYMGVGVAIRDYQRRSDSYAGR NQMAKNPFVALQLIYKAKLKIQFGTIKDLVGILANLFQHATFINID" gene 23452846..23455650 /locus_tag="TCM_045262" /note="dbxref CacaoGD:Thecc1EG045262" mRNA join(23452846..23452991,23453101..23454157, 23454242..23455650) /locus_tag="TCM_045262" /product="Root hair specific 12" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027356001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029250t1" /inference="similar to AA sequence:Phytozome:Glyma13g25560.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6288t1" CDS join(23452917..23452991,23453101..23454157, 23454242..23454921) /locus_tag="TCM_045262" /note="paralog of Thecc1EG029250t1" /codon_start=1 /product="Root hair specific 12" /protein_id="EOY19879.1" /db_xref="Phytozome:Glyma13g25560.1" /db_xref="TAIR:AT3G10710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SG77" /translation="MSSTTFGHRETALPLTNTSNGSGSHKKEKLSNMFRAYGKVNEAD QARLLARRKTRRRIAIIGLSFIVLAAIVVAAVFGSRGSGGDSKNGGNGGVQPISSSIK AVCDVTLYKDTCYDSLAPMANSSQLQPEDIFKLSMKVAIAELSKASQYFSKNGIFKDV ADKMSIAALENCGELLSLAIDHLNSSLSSSGEVSVIQAVDDLRTWLSSASTYQQTCID AFEELKGDTKASVHDHLKYSSELTSNSLAIITWISKVASVLNLRRLMSSSPNHEEPEW FHVKDRKLLQSSDLLKKKADIIVAKDGSGKYKTISAALKAVPDKSKKRIVIYVKKGVY SENVSVEKKKWNVTMIGDGMESTVVSGSLNYVDGTPTFSTATFAVFGKGFVARDIGFV NTAGPQKHQAVALMSTADQSVFYRCRFEAFQDTLYAHSNRQFYRECNIIGTVDFIFGN SAVVFQNCNILPRQPLPNQQNTITAQGKVDPNQNTGIAIQNCTILPYGKLDTSLRTYL GRPWKNYSTTILMHSSLGSVIHPTGWLPWSGTTAPDTIFYSEYKNTGPGSSTKDRVKW KGLRSITDKEAKKFTVKEFLHGDKWISDTGVSYKSSL" mobile_element complement(23455401..23455474) /note="source:CACAO_M_E49205_F4_scaffold_6 2148 2238" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(23456192..23462554) /locus_tag="TCM_045263" /note="dbxref CacaoGD:Thecc1EG045263" mRNA complement(join(23456192..23456779,23457148..23457243, 23457361..23457477,23458585..23458819,23458905..23459068, 23459823..23459898,23460792..23460876,23461127..23461240, 23461979..23462098,23462180..23462327)) /locus_tag="TCM_045263" /product="Calcium-dependent ARF-type GTPase activating protein family isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007207" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026911t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400046304" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12969t00001; inference alignment:Newbler:10:TSA:cgbaL_g12969t00001" CDS complement(join(23456498..23456779,23457148..23457243, 23457361..23457477,23458585..23458819,23458905..23459068, 23459823..23459898,23460792..23460876,23461127..23461240, 23461979..23462021)) /locus_tag="TCM_045263" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026911t1" /codon_start=1 /product="Calcium-dependent ARF-type GTPase activating protein family isoform 1" /protein_id="EOY19880.1" /db_xref="Phytozome:PGSC0003DMP400046304" /db_xref="TAIR:AT3G07940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7A4" /translation="MSAQHGNSDPKSSSGSGSCLYDLLCSETPSWNRVSDAETSSSIQ RKDTLKSTGPRRRLESLLHESGNGVCADCGSPDPKWVSVSLGVFICIKCSGVHRSLGV HISKVLSVKLDEWTDDQVDSLVNLGGNIVANNKYEACLPDNLKKPRPDSSIEERSDFI KRKYEVLQFLDGNDQIICPYPPHQKPSSSTPQCSAGHHFAQDKKQCEKQPTRHRIGHK FRNSWGRKDSEHKSTKKTNSLAGMVEFIGLVKVNVVKGTNLAVRDMMTSDPYVILALG QQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGDAEIDIQPL VAAAKACENSELRESMQLGKWVASKDNTLVKDGIITLVDGKVKQEISLRLQNVERGVL EIELECVPLTQ" mRNA complement(join(<23456750..23456779,23457361..23457477, 23458585..23458819,23458905..23459068,23459823..23459898, 23460792..23460876,23461127..23461240,23461979..23462554)) /locus_tag="TCM_045263" /product="Calcium-dependent ARF-type GTPase activating protein family isoform 2" /inference="alignment:exonerate- protein:2:ricco:30131.m007207" /inference="similar to AA sequence:TAIR:AT3G07940.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc176t2; inference alignment:Newbler:10:TSA:cgbaL_g12969t00001" CDS complement(join(<23456750..23456779,23457361..23457477, 23458585..23458819,23458905..23459068,23459823..23459898, 23460792..23460876,23461127..23461240,23461979..23462021)) /locus_tag="TCM_045263" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Calcium-dependent ARF-type GTPase activating protein family isoform 2" /protein_id="EOY19881.1" /db_xref="TAIR:AT3G07940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7A4" /translation="MSAQHGNSDPKSSSGSGSCLYDLLCSETPSWNRVSDAETSSSIQ RKDTLKSTGPRRRLESLLHESGNGVCADCGSPDPKWVSVSLGVFICIKCSGVHRSLGV HISKVLSVKLDEWTDDQVDSLVNLGGNIVANNKYEACLPDNLKKPRPDSSIEERSDFI KRKYEVLQFLDGNDQIICPYPPHQKPSSSTPQCSAGHHFAQDKKQCEKQPTRHRIGHK FRNSWGRKDSEHKSTKKTNSLAGMVEFIGLVKVNVVKGTNLAVRDMMTSDPYVILALG QQLVYDKDTFST" mobile_element 23459133..23459185 /note="source:scaffold_5_CACTA_0580 13306 13358" /mobile_element_type="transposon:TIR/CACTA" gene complement(23465213..23470781) /locus_tag="TCM_045265" /note="dbxref CacaoGD:Thecc1EG045265" mRNA complement(join(23465213..23465442,23468347..23468544, 23469023..23469207,23470026..23470219,23470696..23470781)) /locus_tag="TCM_045265" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" mobile_element 23467362..23467479 /note="source:scaffold_10_CACTA_0137 6888 7008" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(23468398..23468544,23469023..23469207, 23470026..23470185)) /locus_tag="TCM_045265" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19882.1" /translation="MYMDFREYKNVKVKQMEVSVMVSPTEEEVKANIPVIAVSPKKEE ETEEQDIPKGYCCAGLMQNIMVRQINEPESQGHELRFEIGKTNAQSSKQEFCLVTGLK FGRLPNIFLRSYELGGRKRGRSKGQSKGRKGKKEIEKEKGEEKVVNESLTDSDVINQN NII" mobile_element complement(23468569..23468665) /note="source:INTACT14_F108_scaffold_9-int 3211 3307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23472820..23472884) /note="source:CACAO_on_E69_scaffold_9 963 1029" /mobile_element_type="transposon:TIR/hAT" gene complement(23473055..23476688) /locus_tag="TCM_045266" /note="dbxref CacaoGD:Thecc1EG045266" mRNA complement(join(23473055..23473601,23474008..23474131, 23474683..23474833,23475093..23475254,23475783..23475949, 23476087..23476688)) /locus_tag="TCM_045266" /product="Reverse transcriptase-like protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete" CDS complement(join(23473458..23473601,23474008..23474131, 23474683..23474833,23475093..23475254,23475783..23475949, 23476087..23476433)) /locus_tag="TCM_045266" /codon_start=1 /product="Reverse transcriptase-like protein" /protein_id="EOY19883.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23757" /translation="MALRGDYIMRYFHNVASASRRGNYIGKIISHGQTIEDPIEIKKE VARHFKTFYQFTPILRLNNLNCGIAKLLDRYAKSLELPFSEQEIFYTISNSDGSKALG LDGFNFSFLKSQWNLVRCLYKIVAKALALRLQKVIDEVVGINQFAFIKGRQLVDCAFT TNKLVDTMKENGNLPTTYLRLPLKVALHSTSLWQPIIHRSEGKLYMWKAKTLSMSGTL TLLRLVLSNGSRIKFWDEEWIDGCIFRFEFPRIYALAVKRMGKLMIMAFGIRMNGLGI NGIVHEGKQWDGCQVFELMKVRVAWWMNAKWLDLNLYIDDLGIEHIPRSSNEEANELA KQGVQRTSNLLWITPELTTFNPRMTDVEHD" mobile_element complement(23477671..23478046) /note="source:INTACT375F_F353_scaffold_3-int 15865 16261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23479347..23479433) /note="source:CACAO_M_E69938_F9_scaffold_9 4029 4114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23479432..23479717 /note="source:scaffold_5_CACTA_0614 6119 6409" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23479497..23479723) /note="source:CACAO_M_E44210_F112_scaffold_5 10001 10226" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23479604..23479738) /note="source:INTACT157_F155_scaffold_1-int 24 168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23483371..23483515 /note="source:CACAO_M_S_E38262_F319_scaffold_4 13803 13857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23483721..23484463 /note="source:INTACT897F_F376_scaffold_6-int 611 1397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23484429..23484606) /note="source:CACAO_on_SS_E42_scaffold_2 19793 19964" /mobile_element_type="transposon:TIR/Mutator" mobile_element 23484607..23484624 /note="source:CACAO_PIF_E220_scaffold_7 1823 1975" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23499785..23501681 /note="source:INTACT72F_F343_scaffold_2-int 9283 11352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23504611..23504943) /note="source:CACAO_on_E69_scaffold_9 103 419" /mobile_element_type="transposon:TIR/hAT" gene complement(23505569..23507281) /locus_tag="TCM_045269" /note="dbxref CacaoGD:Thecc1EG045269" mRNA complement(join(23505569..23506242,23506662..23506848, 23506981..23507281)) /locus_tag="TCM_045269" /product="Ribonuclease 2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046327t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc11358t1_C1" CDS complement(join(23505971..23506242,23506662..23506848, 23506981..23507247)) /locus_tag="TCM_045269" /note="paralog of Thecc1EG046327t1" /codon_start=1 /product="Ribonuclease 2, putative" /protein_id="EOY19884.1" /translation="MQRHLLVAAVLTTLSLLVSSQTDYPDFFYKLSLQWPPSVCATSQ CRTQIPGTFTVHGLWPQSVEDDKPIPPYNKKKCTDDRPKAPDQILVELQPIQGKLKDL WPSILTQKTNEEFWQHEWEYHGMCSDYPDKPYNYFDAALVLATTYKPLEGTEVKPRQD PYKAIEIREAIKAKLGKYPEISCGKVSNTLQLKEIRLCFERAKPPVVLRDCPTKYSNK CSDGNNQVKFPPATSGVLEFQSM" mobile_element 23508871..23509013 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3803 3947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23508898..23509093) /note="source:scaffold_1_CACTA_0006 8342 8496" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23509297..23509361 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3897 3961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23509362..23509404 /note="source:scaffold_5_CACTA_0584 1928 2024" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23513983..23514308 /note="source:CACAO_Mutator_E1888_scaffold_9 7472 7798" /mobile_element_type="transposon:TIR/Mutator" gene complement(23516048..23516621) /locus_tag="TCM_045270" /note="dbxref CacaoGD:Thecc1EG045270" mRNA complement(join(23516048..23516189,23516322..23516621)) /locus_tag="TCM_045270" /product="Ribonuclease 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046327t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS complement(join(23516178..23516189,23516322..23516585)) /locus_tag="TCM_045270" /note="paralog of Thecc1EG046327t1" /codon_start=1 /product="Ribonuclease 2" /protein_id="EOY19885.1" /translation="MQRHLLVAAVLATLSLLVSGQTDFFYKLSLQWPPSVCGPSQCGS PIPRTFTIHGLWPQFVTNDRPVPPYNPTTNKCTNVTPTAPGQILVPL" mobile_element 23518672..23519216 /note="source:CACAO_on_E175_scaffold_1 439 971" /mobile_element_type="transposon:TIR/hAT" gene complement(23523241..23526382) /locus_tag="TCM_045271" /note="dbxref CacaoGD:Thecc1EG045271" mRNA complement(join(23523241..23523479,23525290..23526382)) /locus_tag="TCM_045271" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(23523417..23523479,23525290..23525505)) /locus_tag="TCM_045271" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19886.1" /translation="MYEHCFLFFLRMMVCRVMVLAGLLLWSRNIIGAGSFGLICIEMG SSSCAEDGRVRPLFCVWTFSCPGQMLVEATFNISCSMGSSKSGTEIRS" mobile_element complement(23523569..23523636) /note="source:INTACT1391F_F387_scaffold_8-int 8159 8227" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23528217..23529821) /locus_tag="TCM_045272" /note="dbxref CacaoGD:Thecc1EG045272" mRNA complement(join(23528217..23528722,23529203..23529401, 23529494..23529821)) /locus_tag="TCM_045272" /product="Ribonuclease 2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015271t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc15185t1_C1" CDS complement(join(23528466..23528722,23529203..23529401, 23529494..23529766)) /locus_tag="TCM_045272" /note="paralog of Thecc1EG015271t1" /codon_start=1 /product="Ribonuclease 2, putative" /protein_id="EOY19887.1" /translation="MHRYFLVAAVLATVSWLVAGETNFATYKLSLRWPPAHCDAPSFE CKPHVLNTFTIHGLWPQFADGKVVPPYDPDTNRCTDVIPVTDLDPLFRRITPLIEELR KYWPNYKDYQNETLNVNFWKHVWKLHGMCSDYPDNPFSYFRTAVSLGIKYIDPFKGTR ITPRLVPYIAKDISDAIKERLGVYPQIACNEVGGTVQLTEVRLCFKRDRENSPSILQD CPIRYAYKCSDGTDEISFVPHLIG" mobile_element complement(23531082..23531993) /note="source:scaffold_4_CACTA_0511 12879 13788" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23532536..23536432 /note="source:INTACT803_F10_scaffold_6-int 1 3937" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23539100..23540541 /note="source:CACAO_M_E23633_F9_scaffold_4 1 1438" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23540656..23542911) /locus_tag="TCM_045274" /note="dbxref CacaoGD:Thecc1EG045274" mRNA complement(join(23540656..23540857,23542298..23542911)) /locus_tag="TCM_045274" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage" CDS complement(23542506..23542877) /locus_tag="TCM_045274" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19888.1" /translation="MDGSARGSSGLARIGGVLRIEEGSVMVIFFKAVGCINASMVEIL AIKEAFKIYGASKWAGRFKLSKVMLVIPSNLFATLKGLHGECEGLFGELRSLREESKS GPFEKSQDLLMSLLITSLRGS" mobile_element complement(23542884..23546714) /note="source:CACAO_M_S_E119907_F10_scaffold_10 1 3831" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23548082..23549104) /note="source:CACAO_M_E84368_F4_scaffold_10 5105 6140" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23550822..23552266 /note="source:CACAO_M_S_E5285_F300_scaffold_1 2781 4228" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23552291..23554014 /note="source:INTACT804_F10_scaffold_26-int 2120 3864" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(23553698..23580519) /locus_tag="TCM_045276" /note="dbxref CacaoGD:Thecc1EG045276" mRNA complement(join(23553698..23553722,23555249..23556490, 23580280..23580519)) /locus_tag="TCM_045276" /product="Acidic endochitinase" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g30460.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004867t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05980.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage" CDS complement(23555548..23556465) /locus_tag="TCM_045276" /note="paralog of Thecc1EG004867t1" /codon_start=1 /product="Acidic endochitinase" /protein_id="EOY19889.1" /db_xref="Phytozome:POPTR_0015s05980.1" /db_xref="TAIR:AT5G24090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51614" /translation="MARKSQTIALLIFFVAAALSKTSYATVISTYWGQNLYEGTLKEA CDTGIYDIINLAFLNVFGGGQTPSLNLAGHCDPPSGTCVIFGEQITYCQGLGIKILLS LGGAAGNYYLSSQDDAQSVADYLWNTFLGGRTSAGPLGDATLDGIDFDIEGISNLYYD DLARFLKEKSESVYLSAAPQCPFPDYYMGAAIATGLFDTVWTQFYNNPPCQYSDGVTD DLINSWNQWTTSINVTNLFMGLPAAENAAPSGGYIPVDNLISDVLPVIESTAKYGGVM LWSRYYDVQTGYGASIKSSTLGDGLVSSS" mobile_element complement(23558867..23559032) /note="source:scaffold_9_CACTA_0943 5684 5858" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23559140..23559331) /note="source:scaffold_9_CACTA_0943 5658 5858" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23561269..23561693) /note="source:CACAO_PIF_E119_scaffold_3 1765 2206" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23562164..23562382) /note="source:scaffold_9_CACTA_0943 5658 5858" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23567598..23568733 /note="source:CACAO_Mutator_E206_scaffold_1 9748 10908" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(23568734..23568974) /note="source:INTACT89_F140_scaffold_9-int 16349 16592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23569418..23571954) /note="source:INTACT72F_F343_scaffold_2-int 7757 10344" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23574134..23575184) /note="source:INTACT72F_F343_scaffold_2-int 5732 6782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23580156..23580856) /note="source:INTACT72F_F343_scaffold_2-int 9105 9809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23580857..23582533 /note="source:CACAO_Mutator_E592_scaffold_3 5199 7181" /mobile_element_type="transposon:TIR/Mutator" mobile_element 23582534..23583231 /note="source:CACAO_PIF_E62_scaffold_2 9962 10658" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23583232..23585192 /note="source:CACAO_Mutator_E592_scaffold_3 7182 9503" /mobile_element_type="transposon:TIR/Mutator" mobile_element 23585685..23585723 /note="source:CACAO_Mutator_E592_scaffold_3 10295 10333" /mobile_element_type="transposon:TIR/Mutator" mobile_element 23585716..23585894 /note="source:CACAO_PIF_E62_scaffold_2 13764 13940" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23585851..23586080 /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2251" /mobile_element_type="transposon:TIR/Mutator" mobile_element 23585894..23586203 /note="source:CACAO_PIF_E62_scaffold_2 16129 16442" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23586217..23586298 /note="source:CACAO_PIF_E62_scaffold_2 13777 13858" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23586255..23586304 /note="source:CACAO_Mutator_E1320_scaffold_6 208 257" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(23586304..23587164) /note="source:CACAO_Mutator_E1744_scaffold_8 5816 6676" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(23587169..23588527) /note="source:CACAO_Mutator_E1744_scaffold_8 1 1397" /mobile_element_type="transposon:TIR/Mutator" gene 23588504..23589107 /locus_tag="TCM_045280" /note="dbxref CacaoGD:Thecc1EG045280" mRNA 23588504..23589107 /locus_tag="TCM_045280" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027221t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage" CDS 23588723..23589016 /locus_tag="TCM_045280" /note="paralog of Thecc1EG027221t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19890.1" /translation="MFSVPACIYASCSKQNSRKKSNVDGAARGCPSPSSMGGAMRDHE IRVKILFSKPPGHGDSNVTEILAIKDAFYLFATSLWCSTHSLIVESDSSNFVF" mobile_element complement(23590173..23593931) /note="source:INTACT1608F_F65_scaffold_10-int 1 3759" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23596801..23597766 /locus_tag="TCM_045281" /note="dbxref CacaoGD:Thecc1EG045281" mRNA join(23596801..23596899,23597072..23597286, 23597366..23597766) /locus_tag="TCM_045281" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS join(23596841..23596899,23597072..23597286, 23597366..23597547) /locus_tag="TCM_045281" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19891.1" /translation="MGRLCGIAFNVCLMSLQPDWHSIWRMAFYVILWTLWLFRFDIIF NGKVCDASQAFNTVKLRVGWWLKAHRLMDNSPVLDVMREPSFAKVTLIKGCPGASGLG GALRDDNGLVKILFSKSIGIADILILLNFLLLRKPSLVLLLLLGLIHMN" gene complement(23602812..23603970) /locus_tag="TCM_045283" /note="dbxref CacaoGD:Thecc1EG045283" mRNA complement(join(23602812..23603194,23603276..23603970)) /locus_tag="TCM_045283" /product="Acidic endochitinase" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g004660.1.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045276t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05980.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(join(23603001..23603194,23603276..23603918)) /locus_tag="TCM_045283" /note="paralog of Thecc1EG045276t1" /codon_start=1 /product="Acidic endochitinase" /protein_id="EOY19892.1" /db_xref="Phytozome:POPTR_0015s05980.1" /db_xref="TAIR:AT5G24090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51614" /translation="MARKSQTIALLIFFVAVALSKTSYAAFISTYWGQNVSEGTLKEA CDTGIYDIINIAFLNVFGGGRTPSMNLAGHCDPPSGTCVIFGEQIRYCQRLGIKALLS LGGAIGTYGLTSKDDAQSVADYLWETFLPGRTSPGPLGDATLDGIDFDIEGASNLYYD DLVRFLKEKSESVYLSAAPQCPFPDYHLGPAIDTGLFDAVGVQFYNNPPCQYHDAAED AAPAGGYITVGNLTSYVLPVIKKSAKYGGVMLWSRSFDKETGYGASIKPFIHEDGLVY SS" mobile_element 23606238..23607179 /note="source:CACAO_on_S_E46_scaffold_2 471 1379" /mobile_element_type="transposon:TIR/Mutator" gene 23614609..23624145 /locus_tag="TCM_045285" /note="dbxref CacaoGD:Thecc1EG045285" mRNA join(23614609..23614767,23615958..23616291, 23616877..23617711,23624123..23624145) /locus_tag="TCM_045285" /product="Ribonuclease 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045269t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS join(23616084..23616291,23616877..23617133) /locus_tag="TCM_045285" /note="paralog of Thecc1EG045269t1" /codon_start=1 /product="Ribonuclease 2" /protein_id="EOY19893.1" /translation="MQRQLLVAAVLATLSLLISGQTDYPDFFYKLSLQWPPSVCANAK CRSPIPRTFTIHGLWLQSVEDDEPIRLKPRQTPLYKAKEIRDAIYKTFGKYPEISCGK VNNTGKLLLNEIRLCFERANPPFVLRDCPKRNSTRCSNGNDQLKFPPRTSRV" mobile_element complement(23621038..23635150) /note="source:INTACT111_F36_scaffold_10-int 1 14105" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(23635028..23639554) /locus_tag="TCM_045288" /note="dbxref CacaoGD:Thecc1EG045288" mRNA complement(join(23635028..23635665,23635763..23635913, 23636070..23636307,23636472..23636682,23636789..23636913, 23637110..23637235,23637321..23638132,23639079..23639554)) /locus_tag="TCM_045288" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 25, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01002482001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030100t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s02560.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc613t1" CDS complement(join(23635321..23635665,23635763..23635913, 23636070..23636307,23636472..23636682,23636789..23636913, 23637110..23637235,23637321..23638092)) /locus_tag="TCM_045288" /note="paralog of Thecc1EG030100t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 25, putative" /protein_id="EOY19894.1" /db_xref="Phytozome:POPTR_0004s02560.1" /db_xref="TAIR:AT4G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1T8" /translation="MTIVTSTFFSAIFVHLLTLSIAQKELRYVNCENGRGNFSTGSPY QDNLNSVLSSLSSDTGNDHGFYNASFGENPDQVFARALCRGDVEPDICRSCISDARNA RASVCPNQKEALLGYDECMVFYTNHSIFGVLQTSPGMVLWNRANASDPEGFSATLRTL LETSRKQAAAGDTLQKFAVNDTMTTDFSRVYVLTECTPDLSEQQCLDCLDLVIRNQPD CCTGTMIGGRLIVPSCNFRFENYRFYNITHVSSSPPPPGGKKNNTSRTVIIIVIPIAS VVILIICVYIFLKMRKTREQDVESDDENIITAESLQYDFDTIKAATNNFADENRLGQG GFGAVYKGRLSTGQDIAVKRLSKDSGQGDLEFKNEVLLLAKLQHRNLVRLLGFSLERT ERLLIYEFVPNSSLDRFIFDPKRREQLDWEQRYKIIGGIARGLLYLHEDSRLRIIHRD LKASNILLDTDMNPKIADFGMARLFAVDQTQGNTSRIVGTYGYMAPEYAMHGQFSVKS DIFSFGVLILEIVNGQRNICFHDRDNVEDLLSYAWKNWREGTTLNLIDPSLKVSSKAE ITRCIHIALLCVQENVVDRPTMASVAIMLNSYSVTLPVPSHPAFFMHSTIESNLSSSS VYTSRVTDHSLNDEILPLSKNETSITELYPR" mobile_element 23639388..23639614 /note="source:INTACT1313F_F380_scaffold_7-int 1 200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23640328..23642253 /note="source:INTACT1313F_F380_scaffold_7-int 15540 17464" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23642254..23651720) /note="source:INTACT458_F219_scaffold_7-int 5479 15043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23649721..23651763 /note="source:INTACT666_F293_scaffold_9-int 10559 12602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23651764..23652462 /note="source:INTACT666_F293_scaffold_9-int 1 627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23653165..23654772) /note="source:INTACT1391F_F387_scaffold_8-int 11705 13257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23654773..23656961) /note="source:INTACT1391F_F387_scaffold_8-int 1 2174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23657606..23657714 /note="source:INTACT1313F_F380_scaffold_7-int 862 926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23657777..23659721 /note="source:INTACT1313F_F380_scaffold_7-int 15540 17464" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23659722..23659846 /note="source:INTACT790_F336_scaffold_10-int 6577 6701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23660201..23660252 /note="source:INTACT790_F336_scaffold_10-int 6721 6772" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23663900..23665245 /locus_tag="TCM_045291" /note="dbxref CacaoGD:Thecc1EG045291" mRNA join(23663900..23664307,23664391..23664586, 23664692..23665245) /locus_tag="TCM_045291" /product="Ribonuclease 2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045296t1" /inference="similar to AA sequence:frave:gene04739" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(23664050..23664307,23664391..23664586, 23664692..23664996) /locus_tag="TCM_045291" /note="dbxref frave:gene04739; paralog of Thecc1EG045296t1" /codon_start=1 /product="Ribonuclease 2, putative" /protein_id="EOY19895.1" /db_xref="TAIR:AT1G14220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42813" /translation="MNRHLLAVAVLATLLVSVMSEFDFYKLSLQWPPSVCNTGKRCIP DIPNKFTIHGLWPQYDIDTPVPPYNEDPSCISITPKSSEEAMEQLRFIQGELTEYWPN LLTKNDERNDQDFWRREWEKHGMCSNYPHDPFGYFHGTVSLTAEYNPLKAILIISFAS LLQPVIGIQPGDERHKVGTILEAVKQNLGAYPQIACNTRPRNRDPRQIPQLWEIRFCF NRADPPSVLRDCPNKLAGACSTETDLISFPPKPS" gene 23667656..23668875 /locus_tag="TCM_045292" /note="dbxref CacaoGD:Thecc1EG045292" mRNA join(23667656..23667993,23668085..23668283, 23668393..23668875) /locus_tag="TCM_045292" /product="Ribonuclease 2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015271t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(23667721..23667993,23668085..23668283, 23668393..23668649) /locus_tag="TCM_045292" /note="paralog of Thecc1EG015271t1" /codon_start=1 /product="Ribonuclease 2, putative" /protein_id="EOY19896.1" /translation="MHRHFLVAAFLATVSLLMSSEANFATYKLSLHWPAAACNDPASF ECKPNVLNTFTIHGLWPQFANGNPVRPYGPETNRCTDVIPVNSDQILNLMTPLQDFSR KLWPNYKDYQNQTVNENCWKYEWKLYGMYSDSADNPYRYFSTALSLAIKYIDPYKGTR IVPRLVPYMAKDISDAIKENLGVYPQIACNEVRGIVQLKEVRLCFRRDKENPPSVLQD CPRRYANKCSDETNEITFIPHLIG" mobile_element complement(23670258..23670334) /note="source:scaffold_9_CACTA_0942 1548 1616" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23670262..23670350 /note="source:CACAO_on_E69_scaffold_9 5 85" /mobile_element_type="transposon:TIR/hAT" mobile_element 23670357..23670449 /note="source:scaffold_10_CACTA_0127 6454 6548" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23672171..23672246 /note="source:scaffold_5_CACTA_0584 12530 12603" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23674630..23675682) /note="source:INTACT239_F181_scaffold_4-int 6476 7533" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23675683..23678494 /note="source:INTACT726_F314_scaffold_5-int 11207 13899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23681961..23682930) /note="source:CACAO_Again_on_S_E217_scaffold_6 2 973" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(23682933..23683052) /note="source:CACAO_M_E34326_F181_scaffold_4 36 153" /mobile_element_type="retrotransposon:LTR/Copia" gene 23683954..23685312 /locus_tag="TCM_045296" /note="dbxref CacaoGD:Thecc1EG045296" mRNA join(23683954..23684359,23684443..23684638, 23684783..23685312) /locus_tag="TCM_045296" /product="Ribonuclease 2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045291t1" /inference="similar to AA sequence:ricco:30131.m007063" /note="quality class is strong, express is none, homology is paralog strong, intron is weak, protein is complete" CDS join(23684102..23684359,23684443..23684638, 23684783..23685051) /locus_tag="TCM_045296" /note="dbxref ricco:30131.m007063; paralog of Thecc1EG045291t1" /codon_start=1 /product="Ribonuclease 2, putative" /protein_id="EOY19897.1" /translation="MNRLLLAVAVLATLLVSATSEFDFYKLSLMWPPSVCNVGKECIP DIPKMFTIHGLWPQYGDDRPVPPYNKDPSCADITPVSSADAMSQLRFIEGELTKYWPN LFTIDGKRDDQFFWRHEWESHGMCSNYPHDPFGYFYKAFSLTTQYNPLEVMGIQPGDE LHKVGTILETVRQNLGAYPQIACNTLPGTADRWKIRQLWEIRFCFNRAELLSVLRDCP NKLAGTCSEETDLIRFPPNPFY" mobile_element 23687117..23687207 /note="source:scaffold_10_CACTA_0127 6454 6546" /mobile_element_type="transposon:TIR/CACTA" gene 23687354..23696906 /locus_tag="TCM_045297" /note="dbxref CacaoGD:Thecc1EG045297" mRNA join(23687354..23688069,23688336..23688384, 23690223..23690497,23696871..23696906) /locus_tag="TCM_045297" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002648t1" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage" CDS join(23687933..23688069,23688336..23688384, 23690223..23690483) /locus_tag="TCM_045297" /note="paralog of Thecc1EG002648t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19898.1" /translation="MIQQASNANQTFSTLLLSTVYGHNSLMAIWCLPMIRKQIDAPMS LLTTVFLAIKYIDPFKGKEYERLKQQSTRIQEWGESYRQAYTEKYNQMDYLVWQMREV AYKARSMAWKTDILRSQIFPVGKHEQQLIKYLDEVYSHYNKIGEYF" mobile_element complement(23689426..23689566) /note="source:INTACT461_F221_scaffold_3-int 1765 1897" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 23689496..23689990 /note="source:CACAO_on_E459_scaffold_2 137 662" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23689807..23690102 /note="source:CACAO_hAT_E1198_scaffold_3 3718 4013" /mobile_element_type="transposon:TIR/hAT" mobile_element 23690203..23690573 /note="source:INTACT1330F_F382_scaffold_8-int 4472 4843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23696643..23697036 /note="source:INTACT52F_F339_scaffold_1-int 8452 8843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23720029..23722409 /note="source:INTACT405F_F91_scaffold_4-int 15649 18105" /mobile_element_type="retrotransposon:LTR/Copia" gene 23726246..23728518 /locus_tag="TCM_045299" /note="dbxref CacaoGD:Thecc1EG045299" mRNA join(23726246..23726461,23727110..23727300, 23727496..23728383) /locus_tag="TCM_045299" /product="Translocon at the inner envelope membrane of chloroplasts 20 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30170.m014223" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034107t1" /inference="similar to AA sequence:ricco:30170.m014223" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00473t00002; alternateUTRof:Thecc1EG045299t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4778t1" mRNA join(23726282..23726479,23727110..23727300, 23727496..23728302) /locus_tag="TCM_045299" /product="Translocon at the inner envelope membrane of chloroplasts 20 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30170.m014223" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034107t1" /inference="similar to AA sequence:ricco:30170.m014223" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4778t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4778t1" mRNA join(23726978..23727000,23727110..23727300, 23727496..23728518) /locus_tag="TCM_045299" /product="Translocon at the inner envelope membrane of chloroplasts 20 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30170.m014223" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034107t1" /inference="similar to AA sequence:ricco:30170.m014223" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc131t5; alternateUTRof:Thecc1EG045299t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4778t1" CDS join(23727120..23727300,23727496..23728133) /locus_tag="TCM_045299" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30170.m014223; paralog of Thecc1EG034107t1" /codon_start=1 /product="Translocon at the inner envelope membrane of chloroplasts 20 isoform 1" /protein_id="EOY19899.1" /db_xref="TAIR:AT1G04940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PAD4" /translation="MIPHGCTMPSGCASMSSRLSKPMPCSSVFASISRLPTTDALLRI RSSWMLDQDSKSWMLKGLPPLHLSAASTPLLCGDLGGLSQTVPSLPTRRSSTLVPRAS KDVPYSFRYPTMTKKPKWWWRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYP FLGAIGRLPSWFLMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWM PLAVYWGKLGMHFWTAVAFAYLFTVLECIRCALAGMYSDIPFVCDAAYIQIPYD" CDS join(23727120..23727300,23727496..23728133) /locus_tag="TCM_045299" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30170.m014223; paralog of Thecc1EG034107t1" /codon_start=1 /product="Translocon at the inner envelope membrane of chloroplasts 20 isoform 1" /protein_id="EOY19900.1" /db_xref="TAIR:AT1G04940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PAD4" /translation="MIPHGCTMPSGCASMSSRLSKPMPCSSVFASISRLPTTDALLRI RSSWMLDQDSKSWMLKGLPPLHLSAASTPLLCGDLGGLSQTVPSLPTRRSSTLVPRAS KDVPYSFRYPTMTKKPKWWWRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYP FLGAIGRLPSWFLMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWM PLAVYWGKLGMHFWTAVAFAYLFTVLECIRCALAGMYSDIPFVCDAAYIQIPYD" CDS join(23727120..23727300,23727496..23728133) /locus_tag="TCM_045299" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30170.m014223; paralog of Thecc1EG034107t1" /codon_start=1 /product="Translocon at the inner envelope membrane of chloroplasts 20 isoform 1" /protein_id="EOY19901.1" /db_xref="TAIR:AT1G04940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PAD4" /translation="MIPHGCTMPSGCASMSSRLSKPMPCSSVFASISRLPTTDALLRI RSSWMLDQDSKSWMLKGLPPLHLSAASTPLLCGDLGGLSQTVPSLPTRRSSTLVPRAS KDVPYSFRYPTMTKKPKWWWRSLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYP FLGAIGRLPSWFLMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWM PLAVYWGKLGMHFWTAVAFAYLFTVLECIRCALAGMYSDIPFVCDAAYIQIPYD" gene complement(23728866..23732623) /locus_tag="TCM_045300" /note="dbxref CacaoGD:Thecc1EG045300" mRNA complement(join(23728866..23729965,23730059..23730155, 23730761..23730851,23731759..23731820,23732264..23732567)) /locus_tag="TCM_045300" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08400.1" /inference="similar to AA sequence:ricco:29628.m000787" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc161t45; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc161t45" mRNA complement(join(23728866..23729965,23730059..23730155, 23731759..23731783)) /locus_tag="TCM_045300" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08400.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s08400.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9553t2; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc161t45" mRNA complement(join(23728891..23729965,23730059..23730155, 23730761..23730851,23731759..23731823,23732264..23732623)) /locus_tag="TCM_045300" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08400.1" /inference="similar to AA sequence:ricco:29628.m000787" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6457t1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc161t45" CDS complement(join(23729255..23729965,23730059..23730155, 23730761..23730851,23731759..23731820,23732264..23732472)) /locus_tag="TCM_045300" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29628.m000787" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19902.1" /db_xref="TAIR:AT1G32730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTW4" /translation="MAASSPAATKSTTDTTTTTATTGTAATAAAAAATPSPPSLPFQR MDTPPKTQRGLNKPKCIQCGNVARSRCPYRSCKSCCSKAQNPCHIHVLKSNSAYPEKT PTSSTPSSDQKSTQASSQATPLRVPSFRQLSNAFAQFDNLQVRSKKHLTIKDAVALNE WRFSKLKEFKDRNIEVENEAFDRYMQNISLLEEVFSTKSIHKGSNEDEGSEPKPSSLE DETWMMTSGLKLTLRSDPVRTDDSRKRIQQIVDQGIKKLQKCEADDGANDPDDQNKHG SRLNKVKTLWVERASILSDFVDKLNKARSEEDLKSCLDMKARLYNQSIEEADRNVAET KHPEALNKQGAENDVTPRRVADYLLPKLFTPIEIDQETINKVDVHFSSLEQIEDL" CDS complement(join(23729255..23729965,23730059..23730155, 23730761..23730851,23731759..23731823,23732264..23732472)) /locus_tag="TCM_045300" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29628.m000787" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY19903.1" /db_xref="TAIR:AT1G32730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTW4" /translation="MAASSPAATKSTTDTTTTTATTGTAATAAAAAATPSPPSLPFQR MDTPPKTQRGLNKPKCIQCGNVARSSRCPYRSCKSCCSKAQNPCHIHVLKSNSAYPEK TPTSSTPSSDQKSTQASSQATPLRVPSFRQLSNAFAQFDNLQVRSKKHLTIKDAVALN EWRFSKLKEFKDRNIEVENEAFDRYMQNISLLEEVFSTKSIHKGSNEDEGSEPKPSSL EDETWMMTSGLKLTLRSDPVRTDDSRKRIQQIVDQGIKKLQKCEADDGANDPDDQNKH GSRLNKVKTLWVERASILSDFVDKLNKARSEEDLKSCLDMKARLYNQSIEEADRNVAE TKHPEALNKQGAENDVTPRRVADYLLPKLFTPIEIDQETINKVDVHFSSLEQIEDL" CDS complement(join(23729255..23729965,23730059..23730155, 23731759..23731772)) /locus_tag="TCM_045300" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY19904.1" /db_xref="Phytozome:POPTR_0003s08400.1" /db_xref="TAIR:AT1G32730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTW4" /translation="MPYSRTPLRVPSFRQLSNAFAQFDNLQVRSKKHLTIKDAVALNE WRFSKLKEFKDRNIEVENEAFDRYMQNISLLEEVFSTKSIHKGSNEDEGSEPKPSSLE DETWMMTSGLKLTLRSDPVRTDDSRKRIQQIVDQGIKKLQKCEADDGANDPDDQNKHG SRLNKVKTLWVERASILSDFVDKLNKARSEEDLKSCLDMKARLYNQSIEEADRNVAET KHPEALNKQGAENDVTPRRVADYLLPKLFTPIEIDQETINKVDVHFSSLEQIEDL" gene 23733604..23747407 /locus_tag="TCM_045301" /note="dbxref CacaoGD:Thecc1EG045301" mRNA join(23733604..23734044,23734526..23736005, 23736558..23736834,23737766..23738999,23740495..23741058, 23747011..23747407) /locus_tag="TCM_045301" /product="Disease resistance family protein / LRR family protein" /inference="alignment:exonerate-protein:2:frave:gene19039" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045303t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05890.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6449t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6455t1" mobile_element complement(23734605..23734650) /note="source:scaffold_10_CACTA_0128 2431 2476" /mobile_element_type="transposon:TIR/CACTA" CDS join(23734775..23736005,23736558..23736834,23737766) /locus_tag="TCM_045301" /note="paralog of Thecc1EG045303t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein" /protein_id="EOY19905.1" /db_xref="Phytozome:POPTR_0015s05890.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NER7" /translation="MRIANGFNPSAREAKIQCIDKERHALLMVKQSLIDDYGHLSSWG NEDGKKDCCQWRGVQCSNRTRHVIKLDLSNPRTSNHNLLEHNPLRGKINPSLLELQHL RYLDLSGNKFEGSMVPNLNGSLSKLRYLNLYSAGLSSTTLNQLGNLSELQFLDLSYND YNISNLDWFHGLSSLRHLNLSSNKLTDAKDWPQLLNMLPYLEDLKLRSCRLPRIRSPP SLTNSTSSTLSIDLSNNNLTSCIYWLLFNITSKIVDLDLANSLLGGSIPDFFRNMVSL KHLSLSRNHLEGDISKFLGNICTLETLYLWGNNISGSIVPGILGCLENSLQILDLSNN RLNGTLSKSFNFKQPSKLSYLDLSGNQFSGTLPDFTKLSSLKALYLSDNQSNGSVPES LGYLSELEGLDISRNSLEENLPNRITAALARPSAKLLSSLKICLNRIALTSRLRTSML LDKLFIRQGTELWLFTQVMAFRESLSTMREWLLDHGVERKKLIPSLMAASSA" gene 23737214..23747407 /locus_tag="TCM_045302" /note="dbxref CacaoGD:Thecc1EG045302" mRNA join(23737214..23737320,23737766..23738999, 23739615..23739674,23747011..23747407) /locus_tag="TCM_045302" /product="Disease resistance family protein / LRR family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene19039" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045316t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05880.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6439t1" CDS join(23737301..23737320,23737766..23738999, 23739615..23739665) /locus_tag="TCM_045302" /note="paralog of Thecc1EG045316t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein, putative" /protein_id="EOY19906.1" /db_xref="Phytozome:POPTR_0015s05880.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NER8" /translation="MSQQLQLIKAEALTFLDLSSNSLAGVLPDCSVHWQALKVLNLAN NSFSGGIPRTFGSLSSLESINLSDNKFSGELPSSLKNCSRLKHLDLNNNKFSGNIPAW IGENLSSLIHLSLQSNEFKGRIPVSLCQLANIRMLDLSLNTISGTIPLCLNNLTAMSQ KGDSNYIIKYDYFSSSEEGPIGDLVLGLESGSYIEKAWVRWKGKICKCEKSLGLLRSI NLAGNKLVGKIPDEITSLSELVQLNLSGNNLIGFIPKTIGHLKKLESLDLSKNQLSDQ IPASMVDLNFLNCLNLSYNNLSGRIPLSTQIQTMEASAFVGNLALCGPLVTQQYPEDD ATQSQSPEDEIEDEFNKWFYAGIGFGFFIGFWGVFATLLSKRSWRHAYFRFLDNLKDS LYVTIMLWGARSQRKLKKLEATTTLEVAAPDLWTVDSGRWQT" mobile_element 23742508..23742793 /note="source:scaffold_2_CACTA_0260 4226 4511" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23742930..23743508) /note="source:scaffold_10_CACTA_0128 7015 7638" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23743505..23743936) /note="source:scaffold_10_CACTA_0128 6337 6782" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23743962..23744994) /note="source:scaffold_10_CACTA_0128 5778 6262" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23744989..23745089) /note="source:scaffold_10_CACTA_0128 4733 4833" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23745230..23745895) /note="source:scaffold_10_CACTA_0128 3804 4481" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23750085..23752317) /note="source:scaffold_10_CACTA_0128 1 2209" /mobile_element_type="transposon:TIR/CACTA" gene complement(23752505..23753613) /locus_tag="TCM_045304" /note="dbxref CacaoGD:Thecc1EG045304" mRNA complement(join(23752505..23753154,23753547..23753613)) /locus_tag="TCM_045304" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045318t1" /inference="similar to AA sequence:Phytozome:Sb02g041870.1" /note="quality class is medium, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.21 coverage" CDS complement(23752873..23753097) /locus_tag="TCM_045304" /note="paralog of Thecc1EG045318t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19907.1" /db_xref="Phytozome:Sb02g041870.1" /translation="MASVYIAFLRFRGDDNEAKNYSYSLEVGGNGRKMTWQGVPRSIR DNHRKVRDSLMVSSSNVTWLCSSQGETGKN" mobile_element 23755037..23758024 /note="source:CACAO_M_S_E4328_F7_scaffold_1 1 3002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23765268..23765838) /note="source:scaffold_10_CACTA_0128 3026 3661" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23765835..23766630) /note="source:scaffold_10_CACTA_0128 2227 2842" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23767075..23767150) /note="source:scaffold_10_CACTA_0128 868 944" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23767764..23767938 /note="source:CACAO_on_E63_scaffold_8 26 223" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(23767952..23768562) /note="source:CACAO_on_E6_scaffold_1 1 624" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(23768642..23768960) /note="source:scaffold_10_CACTA_0128 2885 3238" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23769130..23769190) /note="source:scaffold_10_CACTA_0128 5896 5953" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23770942..23772325) /note="source:scaffold_10_CACTA_0128 826 2209" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23772362..23772419) /note="source:scaffold_10_CACTA_0128 680 738" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23772442..23772528) /note="source:scaffold_10_CACTA_0128 3549 3630" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23773710..23774293) /note="source:INTACT805_F19_scaffold_8-int 280 853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23774169..23774700 /note="source:CACAO_M_E53135_F19_scaffold_8 186 722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23775713..23777810 /note="source:INTACT238_F180_scaffold_3-int 1 2096" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23777812..23781125) /note="source:INTACT384F_F20_scaffold_3-int 3423 6756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23781112..23782282) /note="source:INTACT599_F268_scaffold_9-int 1 1208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23785526..23786035 /note="source:CACAO_PIF_E220_scaffold_7 1237 1739" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23786552..23787648 /note="source:INTACT897F_F376_scaffold_6-int 1709 2875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23792618..23797261 /note="source:INTACT177_F35_scaffold_3-int 1 4640" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(23798342..23799350) /locus_tag="TCM_045312" /note="dbxref CacaoGD:Thecc1EG045312" mRNA complement(join(23798342..23799059,23799196..23799350)) /locus_tag="TCM_045312" /product="Gb:AAF32477.1, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026278t2" /inference="similar to AA sequence:frave:gene31206" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc4197t1" CDS complement(join(23798584..23799059,23799196..23799301)) /locus_tag="TCM_045312" /note="dbxref frave:gene31206; paralog of Thecc1EG026278t2" /codon_start=1 /product="Gb:AAF32477.1, putative" /protein_id="EOY19908.1" /db_xref="TAIR:AT5G16360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFE7" /translation="MKGIERLFTHRIDSSRLKTGDHIYAYRFIRLYSHHGIFVGDSRV IHFIQTKSNKGASKDKPPCETCGYQKNVHLGVIKTCLDCFLSRRLFSSKSLHLYQYEE HKFEKLVKMPGTGSTAACFPPETVVEIAEAFHVNNNFGGYDLFGNNCEGFATSCKTGH PISEQITSIKNTPIIGVIAPILTNALDHLKSSS" mobile_element 23799618..23802516 /note="source:INTACT271_F62_scaffold_5-int 27 2997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23803796..23803955 /note="source:CACAO_Mutator_E1376_scaffold_6 1864 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 23805361..23805431 /note="source:scaffold_3_CACTA_0384 760 826" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23805464..23805969) /note="source:scaffold_10_CACTA_0128 3104 3661" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23805996..23806724) /note="source:scaffold_10_CACTA_0128 2227 2842" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23808255..23808348) /note="source:scaffold_10_CACTA_0128 6522 6610" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23808344..23808390) /note="source:scaffold_10_CACTA_0128 6264 6311" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23808434..23810063) /note="source:scaffold_10_CACTA_0128 2907 3982" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23810153..23810234) /note="source:scaffold_10_CACTA_0128 5534 5613" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23810714..23810820) /note="source:scaffold_10_CACTA_0128 3876 3983" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23810854..23810919) /note="source:scaffold_10_CACTA_0128 3813 3878" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23811320..23811482) /note="source:scaffold_10_CACTA_0128 4064 4278" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23813286..23815485) /note="source:scaffold_10_CACTA_0128 1 2209" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23818813..23819289) /note="source:CACAO_M_E70016_F74_scaffold_10 1 477" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23819290..23820916 /note="source:scaffold_3_CACTA_0385 3285 4904" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23820887..23828524) /note="source:scaffold_10_CACTA_0128 1 7638" /mobile_element_type="transposon:TIR/CACTA" gene 23822234..23827927 /locus_tag="TCM_045316" /note="dbxref CacaoGD:Thecc1EG045316" mRNA join(23822234..23822570,23826319..23827927) /locus_tag="TCM_045316" /product="Disease resistance family protein / LRR family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045313t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05880.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc848t1" CDS 23826328..23827674 /locus_tag="TCM_045316" /note="paralog of Thecc1EG045313t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein, putative" /protein_id="EOY19909.1" /db_xref="Phytozome:POPTR_0015s05880.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NER8" /translation="MLPDLSSVKFEEFPGMDLSFNMFEGPLPVLPYNMTSIILAKNRF SGSVSSLCKIAAGTLSMLDLSDNLLCGVLPDCFFHWQNLSVLNLANNNFSGVIPITVG SLLSIETINLRNNSFSGDLPSSLKNCNRLKFLDLSENMFSGSIPAWIGENLSSLIFLS LHANEFYGRIPANLCQLANIRILDLSQNNLSGALPLCLNNLIAMVKKGDPNDIIEQLY WSSGQDLSFTIGFYIAKAWVGWKGKKYEYERSLGLFRIIDLASNKLDGEIPDEITRLS ELVALNLSGNNLIGFIPENIGQLKQLESLDLSNNQLSGRIPNSMADLNFLSYLNLSYN NLSGKIPTSTQLQSLDASAFIGNQALYGPPITQQCPKNDTFQPQPPEEERDEFSRWLY IGMGIGFFMAFWGVIGTLLLKRSWRHAYFRLLDNWTDSLHVTFMLWSARLERKFKS" gene 23827974..23838810 /locus_tag="TCM_045317" /note="dbxref CacaoGD:Thecc1EG045317" mRNA join(23827974..23828404,23835143..23838114, 23838222..23838279,23838474..23838810) /locus_tag="TCM_045317" /product="Disease resistance family protein / LRR family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045303t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05890.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.23 coverage" mobile_element complement(23828629..23829108) /note="source:CACAO_M_E70015_F10_scaffold_10 1 480" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23830399..23830646) /note="source:CACAO_on_E565_scaffold_5 13033 13276" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23830991..23831359) /note="source:scaffold_10_CACTA_0128 3874 4257" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23831397..23831855) /note="source:scaffold_10_CACTA_0128 3399 3872" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23831846..23831951) /note="source:scaffold_10_CACTA_0128 3019 3129" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23831942..23832166) /note="source:scaffold_10_CACTA_0128 2629 2850" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23832506..23832613) /note="source:scaffold_10_CACTA_0128 3876 3983" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23832647..23832727) /note="source:scaffold_10_CACTA_0128 3798 3878" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23833231..23833285) /note="source:scaffold_10_CACTA_0128 3874 3928" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23833323..23833646) /note="source:scaffold_10_CACTA_0128 3545 3872" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23833619..23833810) /note="source:scaffold_10_CACTA_0128 2836 3072" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23833803..23834364) /note="source:scaffold_10_CACTA_0128 5534 6096" /mobile_element_type="transposon:TIR/CACTA" CDS 23835267..23837981 /locus_tag="TCM_045317" /note="paralog of Thecc1EG045303t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein, putative" /protein_id="EOY19910.1" /db_xref="Phytozome:POPTR_0015s05890.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NER8" /translation="MVKQSLIDDYGQLSSWGNEDGKKDCCLWRGVRCSNRTRHVIMLD LSNPWTLDHNLWEHNPLRGNINPSLLDLQHLRYLDLSSNQFEGSMLPNLNGSLSKLRY LNLNRAGLSSTILNQLGNLSELQFLDLSYNDYNISNLDWLHGLSSLRHLNLSGNNLTD ANDWPQLLNMLPYREDLKLSWCMLPRILSPPSLTNSTSSSLSIDLSGNNLTSSMYPLL FNITSNIVYLELSYNLLGGSIPEFFENMISLKYLYLRGNNLESDIPKFLGNICTIETL DLSNNNFSGSIVAGFFGCLKNSLQILDPRFSSLRELDLSYNRLNGSFSESFNFKEPSK LAVLWLWANQLTGTLPDFTTLSSLKDLSIGGNQLNGTIPESLGCLSELENLDVSRNSF EGVISETLFKNLSKLKFLDLSDNHLVVNFSSVWVPPFQLQQIVLSSCTLGPHFPKWLQ TQKEFQHLDISGAGISGTIPDWFWDLPPSLSFLNLSHNQITGMLPDLSSLKFKEFPGM DLSFNMFEGPLPVLPYNMTSIILAKNRFSGSVSSLCKIAAGTLSMLDLSDNLLSGVLP DCFFHWQNLSVLNLANNNFSGVIPTTVGSLLSIHTISLRNNSFSGDLPSSLKNCNLLE FLDLSENMFSGSIPAWIGENLLSLIFLSLQANEFYGRIPSNLCQLAKIRILDLSQNTL AGSIPLCLNNLTAMAQKGDPDDDIIEQVYDHSGHGNGFSVGFYTAKAWVGWKGRRHEY ERSLGLLRIIDLASNKLDGEIPDEITRLSELVELNLSGNNLIGFIPENIGQLKQLESL DLSNNQLSGRIPNSMADLNFLSDLNLSYNNLSGKIPTSTQLQSLDASAFTGNQALYGP PITQQSPKMTRFNLNHLKKREMNSIDGYMLEWESDSSWHFGELLALYC" mobile_element complement(23836731..23838953) /note="source:scaffold_10_CACTA_0128 3 2209" /mobile_element_type="transposon:TIR/CACTA" gene complement(23839329..23843308) /locus_tag="TCM_045318" /note="dbxref CacaoGD:Thecc1EG045318" mRNA complement(join(23839329..23840483,23840895..23841281, 23841551..23841781,23842329..23842411,23842753..23843308)) /locus_tag="TCM_045318" /product="RING/U-box and TRAF-like domains" /inference="alignment:exonerate- protein:2:ricco:30131.m007211" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005142t1" /inference="similar to AA sequence:ricco:30131.m007211" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10254t00001" CDS complement(join(23840163..23840483,23840895..23841281, 23841551..23841757)) /locus_tag="TCM_045318" /note="dbxref ricco:30131.m007211; paralog of Thecc1EG005142t1" /codon_start=1 /product="RING/U-box and TRAF-like domains" /protein_id="EOY19911.1" /db_xref="TAIR:AT3G61790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PB73" /translation="MASGNAFFDELRSKPEVIDPPQNEDIIDSESVNDPTQAAIKPNV TVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLA LEKVAASLELPCKYQSFGCIGIYPYYSKLKHESQCSYRPYSCPYAGSECTVIGDIPYL VAHLKDDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGM APVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLII QRNMALFFSGGDRKELKLRVTGRIWKEQ" mobile_element complement(23847786..23847902) /note="source:INTACT383F_F354_scaffold_3-int 1080 1200" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 23849610..23856750 /locus_tag="TCM_045319" /note="dbxref CacaoGD:Thecc1EG045319" mRNA join(23849610..23849664,23849749..23849834, 23849945..23850099,23850687..23850974,23851200..23851329, 23853088..23853195,23853310..23853412,23853485..23853610, 23855073..23855266,23855625..23855744,23855935..23856161, 23856365..23856750) /locus_tag="TCM_045319" /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000658001" /inference="similar to AA sequence:Phytozome:POPTR_0001s06340.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc84t11; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc84t11" mRNA join(23849610..23849664,23849749..23849834, 23849945..23850099,23850687..23850974,23851200..23851329, 23853088..23853195,23853310..23853412,23853485..23853610, 23855073..23855266,23855625..23855744,23855981..23856161, 23856365..23856750) /locus_tag="TCM_045319" /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000658001" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024428001" /inference="similar to AA sequence:Phytozome:POPTR_0001s06340.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc84t10; alternateUTRof:Thecc1EG045319t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc84t11; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc82t16" mRNA join(23849610..23849664,23849749..23849834, 23849945..23850099,23850687..23850974,23851200..23851329, 23853088..23853195,23853310..23853412,23853485..23853610, 23855986..23856750) /locus_tag="TCM_045319" /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000658001" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024428001" /inference="similar to AA sequence:ricco:30131.m007212" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7702t14; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc84t11; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8027t12_C2" mRNA join(23849629..23849664,23849749..23849834, 23849945..23850099,23850712..23850974,23851200..23851329, 23853088..23853195,23853310..23853412,23853485..23853610, 23855073..23855266,23855625..23855744,23855981..23856161, 23856365..23856519) /locus_tag="TCM_045319" /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000658001" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024428001" /inference="similar to AA sequence:Phytozome:POPTR_0001s06340.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6485t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc84t11; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc82t16" mRNA join(23849629..23849664,23849749..23849834, 23849945..23850099,23850687..23850974,23851200..23851329, 23853088..23853195,23853310..23853412,23853485..23853610, 23855073..23855266,23855625..23855744,23855973..23856352) /locus_tag="TCM_045319" /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000658001" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024428001" /inference="similar to AA sequence:Phytozome:POPTR_0001s06340.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6485t1; alternateUTRof:Thecc1EG045319t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc84t11; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc82t16" CDS join(23849782..23849834,23849945..23850099, 23850687..23850974,23851200..23851329,23853088..23853195, 23853310..23853412,23853485..23853610,23855986..23856069) /locus_tag="TCM_045319" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30131.m007212" /codon_start=1 /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 6" /protein_id="EOY19917.1" /db_xref="TAIR:AT3G07300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H7H1" /translation="MPDTQALVNDFLNQLKKRKIEGSQATAKQTAELLRSVISQTRVP YTNQAGALIDSVKAVGERLIAANPVELAVGNIVRRVLHIIREEDVSLTTAAMAGLNLS AVSDDEDDADRDDRPVLSAAAVAAASRSTLRPPSLQTLLEDVPDSAAVPHTSSSGGDS EGKSKSADKSSRSRKLKHDVIEAVNELIQDINTCHEQIAEQAVEHIHQNEVILTLGSS RTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKELVARGLQTTLITDSAVFAMISR VNMVIVGAHAVMANGGVIAPVGLNMVALAAQKHAVPFVVLAGSHKVRDYETAPSIVTA ETIVMTLWKQVLQT" CDS join(23849782..23849834,23849945..23850099, 23850687..23850974,23851200..23851329,23853088..23853195, 23853310..23853412,23853485..23853610,23855073..23855266, 23855625..23855721) /locus_tag="TCM_045319" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 1" /protein_id="EOY19912.1" /db_xref="Phytozome:POPTR_0001s06340.1" /db_xref="TAIR:AT3G07300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H7H1" /translation="MPDTQALVNDFLNQLKKRKIEGSQATAKQTAELLRSVISQTRVP YTNQAGALIDSVKAVGERLIAANPVELAVGNIVRRVLHIIREEDVSLTTAAMAGLNLS AVSDDEDDADRDDRPVLSAAAVAAASRSTLRPPSLQTLLEDVPDSAAVPHTSSSGGDS EGKSKSADKSSRSRKLKHDVIEAVNELIQDINTCHEQIAEQAVEHIHQNEVILTLGSS RTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKELVARGLQTTLITDSAVFAMISR VNMVIVGAHAVMANGGVIAPVGLNMVALAAQKHAVPFVVLAGSHKLCPLYPHNPEVLL NELRSPSELLDFGEFSDCMDFGSGNGAPLLHVVNPTFDYVPPKLVSLFITDTGGHNPS YMYRLIADYYSADDLVVQRRPTSGN" CDS join(23849782..23849834,23849945..23850099, 23850687..23850974,23851200..23851329,23853088..23853195, 23853310..23853412,23853485..23853610,23855073..23855266, 23855625..23855721) /locus_tag="TCM_045319" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 1" /protein_id="EOY19913.1" /db_xref="Phytozome:POPTR_0001s06340.1" /db_xref="TAIR:AT3G07300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H7H1" /translation="MPDTQALVNDFLNQLKKRKIEGSQATAKQTAELLRSVISQTRVP YTNQAGALIDSVKAVGERLIAANPVELAVGNIVRRVLHIIREEDVSLTTAAMAGLNLS AVSDDEDDADRDDRPVLSAAAVAAASRSTLRPPSLQTLLEDVPDSAAVPHTSSSGGDS EGKSKSADKSSRSRKLKHDVIEAVNELIQDINTCHEQIAEQAVEHIHQNEVILTLGSS RTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKELVARGLQTTLITDSAVFAMISR VNMVIVGAHAVMANGGVIAPVGLNMVALAAQKHAVPFVVLAGSHKLCPLYPHNPEVLL NELRSPSELLDFGEFSDCMDFGSGNGAPLLHVVNPTFDYVPPKLVSLFITDTGGHNPS YMYRLIADYYSADDLVVQRRPTSGN" CDS join(23849782..23849834,23849945..23850099, 23850687..23850974,23851200..23851329,23853088..23853195, 23853310..23853412,23853485..23853610,23855073..23855266, 23855625..23855721) /locus_tag="TCM_045319" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 1" /protein_id="EOY19914.1" /db_xref="Phytozome:POPTR_0001s06340.1" /db_xref="TAIR:AT3G07300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H7H1" /translation="MPDTQALVNDFLNQLKKRKIEGSQATAKQTAELLRSVISQTRVP YTNQAGALIDSVKAVGERLIAANPVELAVGNIVRRVLHIIREEDVSLTTAAMAGLNLS AVSDDEDDADRDDRPVLSAAAVAAASRSTLRPPSLQTLLEDVPDSAAVPHTSSSGGDS EGKSKSADKSSRSRKLKHDVIEAVNELIQDINTCHEQIAEQAVEHIHQNEVILTLGSS RTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKELVARGLQTTLITDSAVFAMISR VNMVIVGAHAVMANGGVIAPVGLNMVALAAQKHAVPFVVLAGSHKLCPLYPHNPEVLL NELRSPSELLDFGEFSDCMDFGSGNGAPLLHVVNPTFDYVPPKLVSLFITDTGGHNPS YMYRLIADYYSADDLVVQRRPTSGN" mRNA join(<23849996..23850099,23850687..23850974, 23851200..23851329,23853088..23853195,23853310..23853412, 23853485..23853610,23855073..23855160,23855719..23855959) /locus_tag="TCM_045319" /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000658001" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024428001" /inference="similar to AA sequence:ricco:30131.m007212" /note="transcript variant 7; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc80t9_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc84t11; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc82t16" CDS join(<23849997..23850099,23850687..23850974, 23851200..23851329,23853088..23853195,23853310..23853412, 23853485..23853610,23855073..23855160,23855719..23855813) /locus_tag="TCM_045319" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:30131.m007212" /codon_start=1 /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 7" /protein_id="EOY19918.1" /db_xref="TAIR:AT3G07300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H7H1" /translation="SVISQTRVPYTNQAGALIDSVKAVGERLIAANPVELAVGNIVRR VLHIIREEDVSLTTAAMAGLNLSAVSDDEDDADRDDRPVLSAAAVAAASRSTLRPPSL QTLLEDVPDSAAVPHTSSSGGDSEGKSKSADKSSRSRKLKHDVIEAVNELIQDINTCH EQIAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAK ELVARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLNMVALAAQKHAV PFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSVSLQYSDILVSAFPAYGEV VSCGAIVSHGAQ" mobile_element complement(23850052..23850189) /note="source:scaffold_8_CACTA_0863 4471 4604" /mobile_element_type="transposon:TIR/CACTA" mRNA join(23850071..23850099,23850712..23850974, 23851200..23851329,23853088..23853195,23853310..23853412, 23853485..23853610,23855073..23855266,23855625..23855744, 23855935..23856161,23856365..23856750) /locus_tag="TCM_045319" /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000658001" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024428001" /inference="similar to AA sequence:Phytozome:POPTR_0001s06340.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc84t3; alternateUTRof:Thecc1EG045319t4; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc84t11; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc82t16" CDS join(23850764..23850974,23851200..23851329, 23853088..23853195,23853310..23853412,23853485..23853610, 23855073..23855266,23855625..23855721) /locus_tag="TCM_045319" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 4" /protein_id="EOY19915.1" /db_xref="Phytozome:POPTR_0001s06340.1" /db_xref="TAIR:AT3G07300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H7H1" /translation="MAGLNLSAVSDDEDDADRDDRPVLSAAAVAAASRSTLRPPSLQT LLEDVPDSAAVPHTSSSGGDSEGKSKSADKSSRSRKLKHDVIEAVNELIQDINTCHEQ IAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKEL VARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLNMVALAAQKHAVPF VVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDFGSGNGAPLLHVVNPTF DYVPPKLVSLFITDTGGHNPSYMYRLIADYYSADDLVVQRRPTSGN" CDS join(23850764..23850974,23851200..23851329, 23853088..23853195,23853310..23853412,23853485..23853610, 23855073..23855266,23855625..23855721) /locus_tag="TCM_045319" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 4" /protein_id="EOY19916.1" /db_xref="Phytozome:POPTR_0001s06340.1" /db_xref="TAIR:AT3G07300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H7H1" /translation="MAGLNLSAVSDDEDDADRDDRPVLSAAAVAAASRSTLRPPSLQT LLEDVPDSAAVPHTSSSGGDSEGKSKSADKSSRSRKLKHDVIEAVNELIQDINTCHEQ IAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKEL VARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLNMVALAAQKHAVPF VVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDFGSGNGAPLLHVVNPTF DYVPPKLVSLFITDTGGHNPSYMYRLIADYYSADDLVVQRRPTSGN" mobile_element 23855846..23855899 /note="source:CACAO_M_E48452_F5_scaffold_6 373 425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23861335..23861426) /note="source:scaffold_1_CACTA_0023 6350 6442" /mobile_element_type="transposon:TIR/CACTA" gene 23861957..23867456 /locus_tag="TCM_045322" /note="dbxref CacaoGD:Thecc1EG045322" mRNA join(23861957..23862584,23862672..23862740, 23862839..23862921,23863039..23863112,23863243..23863292, 23863390..23863423,23863532..23863647,23863998..>23864091) /locus_tag="TCM_045322" /product="Transcription elongation factor (TFIIS) family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s31510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001525t2" /inference="similar to AA sequence:ricco:27436.m000291" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc226t18; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc226t21_C1" mRNA join(23861963..23862584,23862672..23862740, 23862839..23862921,23863039..23863112,23863246..23863292, 23863390..23863423,23863532..23863653,23863998..23864091, 23864193..23864306,23865667..23865859,23866370..23866398, 23866855..23867109,23867283..23867456) /locus_tag="TCM_045322" /product="Transcription elongation factor (TFIIS) family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s31510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001525t2" /inference="similar to AA sequence:ricco:27436.m000291" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc226t21_C1" CDS join(23862204..23862584,23862672..23862740, 23862839..23862921,23863039..23863112,23863246..23863292, 23863390..23863423,23863532..23863653,23863998..23864091, 23864193..23864302) /locus_tag="TCM_045322" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27436.m000291; paralog of Thecc1EG001525t2" /codon_start=1 /product="Transcription elongation factor (TFIIS) family protein, putative isoform 1" /protein_id="EOY19919.1" /db_xref="TAIR:AT5G09850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGT8" /translation="MDLDDFRSVLETAGVDVWTFIDSAILVASLDYGQELKQRRDGIV ERLYATSMVTRCKSCDFGERSNGYQVNKEGSPNEGKGGEGGRESPFTPQSDNEDGDLD PYGGLFDDEQKRVLEIKESLEEPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNK LRKHSSNDVRRLVKQLVRKWKEIVDEWVRVNQPGELESAALMDGDSPQQKLPQNGRQQ VPDFAYSPNPHNGSFGLEKNNSEPERKPKPIPPPRKDPPPRPTHSTPPQNVQRQREQK ESNFDSERLASARKRLQANYKEAENAKKQRTIQVMDIHELPKPKNAFFGKNKGGGSQG RHW" CDS join(23862204..23862584,23862672..23862740, 23862839..23862921,23863039..23863112,23863243..23863292, 23863390..23863423,23863532..23863647,23863998..>23864090) /locus_tag="TCM_045322" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27436.m000291; paralog of Thecc1EG001525t2" /codon_start=1 /product="Transcription elongation factor (TFIIS) family protein, putative isoform 2" /protein_id="EOY19920.1" /db_xref="TAIR:AT5G09850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGT8" /translation="MDLDDFRSVLETAGVDVWTFIDSAILVASLDYGQELKQRRDGIV ERLYATSMVTRCKSCDFGERSNGYQVNKEGSPNEGKGGEGGRESPFTPQSDNEDGDLD PYGGLFDDEQKRVLEIKESLEEPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNK LRKHSSNDVRRLVKQLVRKWKEIVDEWVRVNQPGELESAALMADGDSPQQKLPQNGRQ QVPDFAYSPNPHNGSFGLEKNNSEPERKPKPIPPPRKDPPPRPTHSTPPQNRQREQKE SNFDSERLASARKRLQANYKEAEN" gene complement(23868041..>23872233) /locus_tag="TCM_045324" /note="dbxref CacaoGD:Thecc1EG045324" mRNA complement(join(23868041..23868608,23870264..23870342, 23870429..23870573,23871915..>23872233)) /locus_tag="TCM_045324" /product="SKP1/ASK-interacting protein 5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000659001" /inference="similar to AA sequence:Phytozome:GSVIVT01000659001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc227t9; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc227t10; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc232t11_C2" mRNA complement(join(23868041..23868657,23869252..23869310, 23870264..23870342,23870429..23870573,23871915..23872233)) /locus_tag="TCM_045324" /product="SKP1/ASK-interacting protein 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000659001" /inference="similar to AA sequence:Phytozome:GSVIVT01000659001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc227t10; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc227t10" CDS complement(join(23868309..23868608,23870264..23870342, 23870429..23870573,23871915..>23872233)) /locus_tag="TCM_045324" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="SKP1/ASK-interacting protein 5 isoform 2" /protein_id="EOY19922.1" /db_xref="Phytozome:GSVIVT01000659001" /db_xref="TAIR:AT3G54480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94FT2" /translation="LVVSDFCSLTLHRQAVNILRKKTISFFFFSSAISFFNKKKIPGN KLSLPSKAAMEVEEQEGRKSRKMKRSNKNERISSSSSSSFAPINSLDDGCLMHIFSFL SPIPDRYNTALVCHRWHYLACHPQLWLRVDRSLKDFSEPGVFPNIEEAVSAARPGDTI LIAAGGSHLASNIQIRKPLCLAELGCCLLHRSGRLIIDECILQCESNPLDYLSCPIVS TAGSEVFPSNLKSHRSDCVSVSHTRIEGGAKAVLTSGDLALQRVRVIYARTSLYFWFD VDCK" CDS complement(join(23868309..23868657,23869252..23869310, 23870264..23870342,23870429..23870573,23871915..23872074)) /locus_tag="TCM_045324" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="SKP1/ASK-interacting protein 5 isoform 1" /protein_id="EOY19921.1" /db_xref="Phytozome:GSVIVT01000659001" /db_xref="TAIR:AT3G54480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94FT2" /translation="MEVEEQEGRKSRKMKRSNKNERISSSSSSSFAPINSLDDGCLMH IFSFLSPIPDRYNTALVCHRWHYLACHPQLWLRVDRSLKDFSEPGVFPNIEEAVSAAR PGDTILIAAGGSHLASNIQIRKPLCLIGGGELPDETTLLCLRGSDSALEFLSTCKLTN LTVKAELGCCLLHRSGRLIIDECILQCESNPLDYLSCPIVSTAGSEVFPSNLKSHRSD CVSVSHTRIEGGAKAVLTSGDLALQRVRVIYARTSLYFWFDVDCK" misc_feature complement(join(23870550..23870573,23870799..23871600)) /locus_tag="TCM_045324" /note="Gene fragment of Thecc1EG045324t1; dbxref gnl|CacaoGD|Thecc1EG045324t1; quality class is mediumpartial-partof is thecc1eg045324t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc193t9_C2; dbxref CacaoGD:Thecc1EG045326t1" gene 23872424..23878256 /locus_tag="TCM_045327" /note="dbxref CacaoGD:Thecc1EG045327" mRNA join(23872424..23872852,23874769..23874852, 23875157..23875330,23877285..23877398,23877783..23878256) /locus_tag="TCM_045327" /product="RNA polymerase II fifth largest subunit, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007214" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024387t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06280.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01012t00001" mRNA join(23872424..23872852,23875157..23875330, 23877285..23877398,23877783..23878256) /locus_tag="TCM_045327" /product="RNA polymerase II fifth largest subunit, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30131.m007214" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024387t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s06280.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b043718t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g01012t00001" CDS join(23872559..23872852,23874769..23874852, 23875157..23875330,23877285..23877398,23877783..23877908) /locus_tag="TCM_045327" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG024387t1" /codon_start=1 /product="RNA polymerase II fifth largest subunit, putative isoform 1" /protein_id="EOY19923.1" /db_xref="Phytozome:POPTR_0001s06280.1" /db_xref="TAIR:AT3G54490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GM22" /translation="MATNFANSGEVSGHVCNDGGAEGAQPCIKSMVDQGSVESHRFYL ARKTVWEMLKDRGYNVADSELTPSITEFRSVFGDQPDLELLRISVSLRSNPSKKSKGR NAESGVIETGRNDKQRNVLSGPIEILVVFMGTNDIRKATVCALKGQILNESLSGLILI LQSKMNSFALKELKNFPFKVELFKIADLYVNITKHFLMPKHEVLTAEEKQKLLKKYQL EDKQLPQMLQTDPIARYYGLEKGQVVKVTYSEEFVQFHEQYRCVV" CDS join(23872559..23872852,23875157..23875330, 23877285..23877398,23877783..23877908) /locus_tag="TCM_045327" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG024387t1" /codon_start=1 /product="RNA polymerase II fifth largest subunit, putative isoform 2" /protein_id="EOY19924.1" /db_xref="Phytozome:POPTR_0001s06280.1" /db_xref="TAIR:AT3G54490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GM22" /translation="MATNFANSGEVSGHVCNDGGAEGAQPCIKSMVDQGSVESHRFYL ARKTVWEMLKDRGYNVADSELTPSITEFRSVFGDQPDLELLRISVSLRSNPSKKILVV FMGTNDIRKATVCALKGQILNESLSGLILILQSKMNSFALKELKNFPFKVELFKIADL YVNITKHFLMPKHEVLTAEEKQKLLKKYQLEDKQLPQMLQTDPIARYYGLEKGQVVKV TYSEEFVQFHEQYRCVV" gene complement(23878655..23886476) /locus_tag="TCM_045328" /note="dbxref CacaoGD:Thecc1EG045328" mRNA complement(join(23878655..23882323,23884944..23885136, 23885902..23886476)) /locus_tag="TCM_045328" /product="Receptor like protein 6, putative" /inference="alignment:exonerate- protein:2:frave:gene18090.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045334t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s39970.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(23879400..23882318) /locus_tag="TCM_045328" /note="paralog of Thecc1EG045334t1" /codon_start=1 /product="Receptor like protein 6, putative" /protein_id="EOY19925.1" /db_xref="Phytozome:POPTR_0001s39970.1" /db_xref="TAIR:AT1G45616.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N959" /translation="MGWFPWLCQLLCLLLFSLDFQANFSSSLSPSPTPPQCSDFESAA LLQFKGTFSINNASAYLCNFVGTKSYPKTNSWMEGTDCCRWKGVVCDSASGHVIGIDL SCSWLYGAITSNSSLFLLRHLQRLNLAYNDFRGSNISPEFGGFASLTHLNLSSSGFSG KIPYSSISQLSTLVSIDLTVRNYGLLQVEEHTLRGLVQNLTKVRVLVLNGVNISAVDP GSLMNLSSSLISLSLNNCGLRGRFPQNIFHLPNLRMLSLSGNRDLSGYLPKTNWSGPL VSLSLWSTSFSGELPDSIGNLESLTYLDLAASTFSGSVPRSLGNLSQLIYLDLCANGF TGHISFSLAKLTQLDHLSLCSNQLVGLIPDQVSLFHKISFLDLAYNFLNGTLPTWLYS HSALEFLYLQGNNFTGQIKEFQQKSLVYIYLGNNKLQGPTPNSIVELVNLTKLSLESN NLSGIVELDMFSKLQNLQVLDLSSNNLSVKSNIDVNYTLPNLFMLFLSSCKLRDFPKF VIALTNLNRLDLSNNGIHGMIPKWLGNVGKNSLSYLNLSNNFLTYLEEIPWNQMQILD LHSNLLQGKLPFLPPTTTFFSISNNSLSGGISSQICNVSFLSILDLSRNNLGGTIPQC LVNFSAYLSVLNLKMNKFYGIIPFSFANDCGLKYINFNGNQLEGRLPPSMAGCRYMEV LDLGNNKINDTFPQWLETLPELQVLVLRSNQLHGFIHGCKSAHCFSKLQILDLSNNDF TGPLPSEYIANLKSMRNQRRNDGSLQYLRDIGSYGYTYDYSVVVAIKGFDRELVKISA IFISIDLSNNKFEGEISTDFGKLISIRGLNLSHNSLNGHIPQSIGNLTVLEWLDLSSN KLVGKIPMQMVDLTSLSFLNLSYNQLVGPIPQGNQFNTFENGSFEGNLDLCGFPLNKA CSGNENQQSPSNDSDSEYGFGWKVVLLGYGCGFVFGVAVGYLVIVTRKPKWLGTLVDW " gene complement(23885289..23892046) /locus_tag="TCM_045329" /note="dbxref CacaoGD:Thecc1EG045329" mRNA complement(join(23885289..23885310,23885902..23886421, 23887273..23889213,23891563..23892046)) /locus_tag="TCM_045329" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045344t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6462t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc6237t1" CDS complement(23887474..23888832) /locus_tag="TCM_045329" /note="paralog of Thecc1EG045344t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19926.1" /translation="MATEDRDIHQTLGQLNQTLSMIDQNLDQVSQDSSTEVLNGLAEA VAGLKANQEELKDVFYELLTSFFRAGEGNSHNRDLSQLQDEGLRVIETEGEDELVGLV DGLEGLKKRGDELNERVIELMRDYNIVPKCSGGIEESYKENKPMDLESLAFTKEDGQE KSQGPKRNLESRDFSFYVVATHLYGFPWNVAMEIERSLGHRTLVESERLFLEDEDHIV LDEDSDSDDDGKLQEKDAGELKWVRVKKLKQIFEELKKKIYIKEEIDLNVSPKASDSG DELDPVTVNLRKRFLKVIRNWIFHIESVFVDLMFEIYYMFPGNDAEENIFQDLKSKLE DMMEIYLGMVPISVYKIIYMMENTEGANLEALMKMMTTLLGSNEEILYEKMNLNDRMD QAHKIILRLRSMLVTADLSYTRFIKEGESATYEKLLSESEEELRDIQRNIDRVKSELK IK" mobile_element 23890837..23891029 /note="source:CACAO_M_E49205_F4_scaffold_6 13838 14029" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23891060..23892728 /note="source:INTACT72F_F343_scaffold_2-int 9105 10867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23898794..23899528) /note="source:CACAO_M_E48416_F289_scaffold_6 2078 2813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23899962..23900883) /note="source:CACAO_M_S_E100121_F313_scaffold_9 1040 1919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23900619..23901361 /note="source:INTACT904F_F49_scaffold_6-int 7687 8586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23902460..23902940) /note="source:CACAO_M_S_E86211_F313_scaffold_7 1 493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23903789..23905755) /note="source:CACAO_M_E70014_F74_scaffold_10 9361 11327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23906577..23907625) /note="source:CACAO_M_E70014_F74_scaffold_10 7591 8639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23910799..23911503) /note="source:CACAO_M_E70014_F74_scaffold_10 5135 5839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23912781..23916227) /note="source:CACAO_M_E70014_F74_scaffold_10 1688 5134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23917366..23919052) /note="source:CACAO_M_E70014_F74_scaffold_10 1 1687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23921995..23923960 /note="source:CACAO_Mutator_E1320_scaffold_6 4288 6296" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(23923882..23923961) /note="source:CACAO_Mutator_E1744_scaffold_8 2025 2106" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(23923962..23925470) /note="source:CACAO_M_S_E119890_F17_scaffold_10 1 1509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23926150..23926245 /note="source:scaffold_8_CACTA_0867 15128 15222" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23926461..23928342) /note="source:INTACT242_F12_scaffold_1-int 2727 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23929192..23929460 /note="source:INTACT745_F320_scaffold_4-int 8161 8437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23930031..23930123 /note="source:CACAO_M_E48452_F5_scaffold_6 14244 14355" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23930418..23930483) /note="source:CACAO_Mutator_E1744_scaffold_8 1289 1352" /mobile_element_type="transposon:TIR/Mutator" mobile_element 23930485..23931283 /note="source:CACAO_Mutator_E1320_scaffold_6 7783 8542" /mobile_element_type="transposon:TIR/Mutator" gene complement(23931084..23934776) /locus_tag="TCM_045334" /note="dbxref CacaoGD:Thecc1EG045334" mRNA complement(23931084..23934776) /locus_tag="TCM_045334" /product="Receptor like protein 6, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s39970.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045328t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s39970.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(23931503..23934382) /locus_tag="TCM_045334" /note="paralog of Thecc1EG045328t1" /codon_start=1 /product="Receptor like protein 6, putative" /protein_id="EOY19927.1" /db_xref="Phytozome:POPTR_0001s39970.1" /db_xref="TAIR:AT1G45616.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N959" /translation="MAWFAWLYQMLCILLFSLKLQAILSASLPSSTHIDEGAALLQFK STFSLNNMSSSGCGLVGIKSYPKTNSWKNGTDCCSWDGVTCDSATGYVIGLDLSCSWL LGSITSNSSLFLLRNLQMLNLAHNDFKASTVSSEFGNFASLMHLNLSSSSFSGNVPSS TSHLSNLVSLDLSNNLFQMTIEEPTFRKLVQNLTEIREIFLDQIIFGSFELGSLMNVS SSLTSLSLNYCELQGKFPEYVFHLPNLRLLSLHRNPELIGYIPKSNWTGPSEFLSLWD TSFSGELPDSIGNLESLKHLNFALCNFSGRVPRSLGNLSKLIHLDFAANSFSGHIPSS LINLTDLTFLRLSTNQLVGSIPNMAALFHSILYIDLSYNSLNGTLPSWLFSLSSLQYL YLHNNQLIGRIHEFQQTSLIEVDMRNNKFQGSIPSSISRLVNLTELDLSSNNLSGNLE LDMFSELKNLLFLDLSHNSLSLSFNNNDSPILPVSLEFLFLSSCKVDEFPKFLKVLTN LQQLDLSHNGIQGHLPKWAWDMGKDSLSYLNLSHNLLTSLEEIPWRHIEVMDFRSNLI EGNLPVFPLSTVFFSISNNNLNGQISSQICNVSFLEVLDLSHNNLSGTIPECLGSFNA SLSVLNLKMNNFSGTIPSRFAEDCGLKNININSNRLEGTLPRSMVNCRNIEVLDLGNN MMNDTFPHWLGNLSELQVLVLRSNKLHGSIRGCETENCFSNLRILDLSNNDFSGSLPS KYVENLKSMTKLGEGQSPYLEFVSDIGNQYGYSYDYSVSVVMKGHDRELVKILKIFKS IDLSNNKFRGEIPTSIGKLVSLKGLNLSHNSFSGHIPWTMGNLNALEWLDLSSNKLVG KIPKQLVGLTSLSSLNLSYNQLVGPLPQGKQFNTFENGSFEGNLGLCGFPLSKDCKED EVGQPVPSSVDDSESENGFGWKVVLLGYGCGFLFGAMGYLVIRRG" gene complement(23934948..23945784) /locus_tag="TCM_045335" /note="dbxref CacaoGD:Thecc1EG045335" mRNA complement(join(23934948..23935460,23935559..23935938, 23937048..23937099,23937791..23937945,23938025..23938744, 23939882..23939971,23940080..23940377,23940959..23941088, 23941179..23941521,23945418..23945554)) /locus_tag="TCM_045335" /product="Agglutinin-like protein ALA1, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30131.m007216" /inference="similar to AA sequence:Phytozome:GSVIVT01000669001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc216t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc216t11" mRNA complement(join(23935060..23935460,23935559..23935938, 23937791..23937945,23938025..23938588,23938667..23938744, 23939882..23939971,23940080..23940377,23940959..23941088, 23941179..23941521,23945418..23945554)) /locus_tag="TCM_045335" /product="Agglutinin-like protein ALA1, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30131.m007216" /inference="similar to AA sequence:Phytozome:GSVIVT01000669001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc216t10_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc216t11" mRNA complement(join(23935067..23935436,23935527..23935938, 23937791..23937945,23938025..23938744,23939882..23939971, 23940080..23940377,23940959..23941088,23941179..23941521, 23945418..23945703)) /locus_tag="TCM_045335" /product="Agglutinin-like protein ALA1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007216" /inference="similar to AA sequence:Phytozome:GSVIVT01000669001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00169t00002; alternateUTRof:Thecc1EG045335t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc216t11" mRNA complement(join(23935069..23935460,23935559..23935938, 23937791..23937945,23938025..23938744,23939882..23939971, 23940080..23940377,23940959..23941088,23941179..23941521, 23945418..23945784)) /locus_tag="TCM_045335" /product="Agglutinin-like protein ALA1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007216" /inference="similar to AA sequence:Phytozome:GSVIVT01000669001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc216t11" CDS complement(join(23935581..23935938,23937791..23937945, 23938025..23938588,23938667..23938744,23939882..23939971, 23940080..23940377,23940959..23941088,23941179..23941521, 23945418..23945441)) /locus_tag="TCM_045335" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Agglutinin-like protein ALA1, putative isoform 3" /protein_id="EOY19930.1" /db_xref="Phytozome:GSVIVT01000669001" /db_xref="TAIR:AT3G54500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGC7" /translation="MFDWNDEELTNIIWGEDGESDDHIVPYQEGSENCHSKKEWSQET ATIKSTDQKTPGDKVDLHGRKVEGSSNFNANGGIATSGFGMVSWPELSLSNAAKTDQD SMGSEVSNHLAEVNKYSSTNAGTTELTKDSQIFQNPNEGKEQGDLVDYSWANIGSFDD LDRIFSNDDPIFGNVSLGSADDLWSSSKEVTNSAAKSFPTTVDSPSLGLGALRSTSEN LEVKREYEQQDNQPFTLSYEKLDGSTSHGLHHVEFAGDESKSIIEEQMNVETRGKTSA SKSHMVAEKVMAPNELGDKVHRHKKLLKFWKKSGDIGEAKLLQDLPSSVVGQQRQLRG SDSLQYQHISNTFVAPSAYGNLTNQYPTIPVLSNIQSGEFKQQPLLSCYDVSPSKANS VNRSVEASTKPLSMTPQEKIEKLRRRQQMQALLAIQKQQQQFHRQVPCADHSVIQKCN QENQFQHVEGADVEDLTTLASFDPNSPLEQDDSNTVSVAVDDCSVEETVLYRLQDVIG KLDIKIRLCIRDSLFRLAQSAMQRHYASDTSSTNKSSRDENEVAKEENKNHNRMSDAE TETNPIDRTVAHLLFHRPLELPGKHPETPESPASTKFPCERKSASLLGLPIGCISDNS QVQQNLIHQVLKGPSPLLDSQQVEQFKNSTCIDGSENASNYGPADVGATEVEALH" CDS complement(join(23935581..23935938,23937791..23937945, 23938025..23938744,23939882..23939971,23940080..23940377, 23940959..23941088,23941179..23941521,23945418..23945441)) /locus_tag="TCM_045335" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Agglutinin-like protein ALA1, putative isoform 1" /protein_id="EOY19928.1" /db_xref="Phytozome:GSVIVT01000669001" /db_xref="TAIR:AT3G54500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGC7" /translation="MFDWNDEELTNIIWGEDGESDDHIVPYQEGSENCHSKKEWSQET ATIKSTDQKTPGDKVDLHGRKVEGSSNFNANGGIATSGFGMVSWPELSLSNAAKTDQD SMGSEVSNHLAEVNKYSSTNAGTTELTKDSQIFQNPNEGKEQGDLVDYSWANIGSFDD LDRIFSNDDPIFGNVSLGSADDLWSSSKEVTNSAAKSFPTTVDSPSLGLGALRSTSEN LEVKREYEQQDNQPFTLSYEKLDGSTSHGLHHVEFAGDESKSIIEEQMNVETRGKTSA SKSHMVAEKVMAPNELGDKVHRHKKLLKFWKKSGDIGEAKLLQDLHGTWTPSGNPLAQ YENNVATSIVKSSPSSVVGQQRQLRGSDSLQYQHISNTFVAPSAYGNLTNQYPTIPVL SNIQSGEFKQQPLLSCYDVSPSKANSVNRSVEASTKPLSMTPQEKIEKLRRRQQMQAL LAIQKQQQQFHRQVPCADHSVIQKCNQENQFQHVEGADVEDLTTLASFDPNSPLEQDD SNTVSVAVDDCSVEETVLYRLQDVIGKLDIKIRLCIRDSLFRLAQSAMQRHYASDTSS TNKSSRDENEVAKEENKNHNRMSDAETETNPIDRTVAHLLFHRPLELPGKHPETPESP ASTKFPCERKSASLLGLPIGCISDNSQVQQNLIHQVLKGPSPLLDSQQVEQFKNSTCI DGSENASNYGPADVGATEVEALH" CDS complement(join(23935581..23935938,23937791..23937945, 23938025..23938744,23939882..23939971,23940080..23940377, 23940959..23941088,23941179..23941521,23945418..23945441)) /locus_tag="TCM_045335" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Agglutinin-like protein ALA1, putative isoform 1" /protein_id="EOY19931.1" /db_xref="Phytozome:GSVIVT01000669001" /db_xref="TAIR:AT3G54500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGC7" /translation="MFDWNDEELTNIIWGEDGESDDHIVPYQEGSENCHSKKEWSQET ATIKSTDQKTPGDKVDLHGRKVEGSSNFNANGGIATSGFGMVSWPELSLSNAAKTDQD SMGSEVSNHLAEVNKYSSTNAGTTELTKDSQIFQNPNEGKEQGDLVDYSWANIGSFDD LDRIFSNDDPIFGNVSLGSADDLWSSSKEVTNSAAKSFPTTVDSPSLGLGALRSTSEN LEVKREYEQQDNQPFTLSYEKLDGSTSHGLHHVEFAGDESKSIIEEQMNVETRGKTSA SKSHMVAEKVMAPNELGDKVHRHKKLLKFWKKSGDIGEAKLLQDLHGTWTPSGNPLAQ YENNVATSIVKSSPSSVVGQQRQLRGSDSLQYQHISNTFVAPSAYGNLTNQYPTIPVL SNIQSGEFKQQPLLSCYDVSPSKANSVNRSVEASTKPLSMTPQEKIEKLRRRQQMQAL LAIQKQQQQFHRQVPCADHSVIQKCNQENQFQHVEGADVEDLTTLASFDPNSPLEQDD SNTVSVAVDDCSVEETVLYRLQDVIGKLDIKIRLCIRDSLFRLAQSAMQRHYASDTSS TNKSSRDENEVAKEENKNHNRMSDAETETNPIDRTVAHLLFHRPLELPGKHPETPESP ASTKFPCERKSASLLGLPIGCISDNSQVQQNLIHQVLKGPSPLLDSQQVEQFKNSTCI DGSENASNYGPADVGATEVEALH" CDS complement(join(23935930..23935938,23937048..23937099, 23937791..23937945,23938025..23938744,23939882..23939971, 23940080..23940377,23940959..23941088,23941179..23941521, 23945418..23945441)) /locus_tag="TCM_045335" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Agglutinin-like protein ALA1, putative isoform 2" /protein_id="EOY19929.1" /db_xref="Phytozome:GSVIVT01000669001" /db_xref="TAIR:AT3G54500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGC7" /translation="MFDWNDEELTNIIWGEDGESDDHIVPYQEGSENCHSKKEWSQET ATIKSTDQKTPGDKVDLHGRKVEGSSNFNANGGIATSGFGMVSWPELSLSNAAKTDQD SMGSEVSNHLAEVNKYSSTNAGTTELTKDSQIFQNPNEGKEQGDLVDYSWANIGSFDD LDRIFSNDDPIFGNVSLGSADDLWSSSKEVTNSAAKSFPTTVDSPSLGLGALRSTSEN LEVKREYEQQDNQPFTLSYEKLDGSTSHGLHHVEFAGDESKSIIEEQMNVETRGKTSA SKSHMVAEKVMAPNELGDKVHRHKKLLKFWKKSGDIGEAKLLQDLHGTWTPSGNPLAQ YENNVATSIVKSSPSSVVGQQRQLRGSDSLQYQHISNTFVAPSAYGNLTNQYPTIPVL SNIQSGEFKQQPLLSCYDVSPSKANSVNRSVEASTKPLSMTPQEKIEKLRRRQQMQAL LAIQKQQQQFHRQVPCADHSVIQKCNQENQFQHVEGADVEDLTTLASFDPNSPLEQDD SNTVSVAVDDCSVEETVLYRLQDVIGKLDIKIRLCIRDSLFRLAQSAMQRHYASDTSS TNKSSRDENEVAKEENKNHNRCSQGRVTAHCLCTNVISDV" gene complement(23952552..23953424) /locus_tag="TCM_045336" /note="dbxref CacaoGD:Thecc1EG045336" mRNA complement(join(23952552..23952961,23953108..23953424)) /locus_tag="TCM_045336" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(23952789..23952961,23953108..23953396)) /locus_tag="TCM_045336" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19932.1" /translation="MDVAAPIFDADNVPTIGRLEIERAELHITKLAQLLALHDNCRDV IFQGANMAFQAILPVRHLTIEEKNGQNILVPRRGGLQEERPARGHARGRGGRDDGDGG IPIMDRDLGVDVYRDIGVGVGTGVDGDKDGARDGGGVRDEDETPRRKRERL" gene complement(23957096..23957734) /locus_tag="TCM_045337" /note="dbxref CacaoGD:Thecc1EG045337" mRNA complement(23957096..23957734) /locus_tag="TCM_045337" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(23957388..23957660) /locus_tag="TCM_045337" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19933.1" /translation="MNKKYHIPQEQQIACVVKQLQQKQPLWTLLEEACIRSQISTVND QLIEEPMQIRKEVAKRFTQLYGTRKVMKLVDLECGIRILKRSPERL" gene 23958681..23964003 /locus_tag="TCM_045338" /note="dbxref CacaoGD:Thecc1EG045338" mRNA join(23958681..23958842,23959805..23960327, 23962460..23962605,23962709..23962927,23963027..23963239, 23963348..23963437,23963534..23964003) /locus_tag="TCM_045338" /product="Annexin-like protein RJ4 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene14343" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040865t1" /inference="similar to AA sequence:frave:gene14343" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:PASA:2:TSA:puevd3b043729t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g03345t00001" mRNA join(23958681..23958842,23959805..23960327, 23961177..23961286,23962194..23962302,23962460..23962605, 23962709..23962927,23963027..23963239,23963348..23963437, 23963534..23963955) /locus_tag="TCM_045338" /product="Annexin-like protein RJ4 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene14343" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040865t1" /inference="similar to AA sequence:frave:gene14343" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03345t00001" mRNA join(23959987..23960327,23962493..23962605, 23962709..23962927,23963027..23963239,23963348..23963437, 23963534..23964003) /locus_tag="TCM_045338" /product="Annexin-like protein RJ4 isoform 3" /inference="alignment:exonerate-protein:2:frave:gene14343" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040865t1" /inference="similar to AA sequence:frave:gene14343" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00101t00002; inference alignment:Newbler:10:TSA:cgbaP1_g03345t00001; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1909t1" CDS join(23960255..23960327,23961177..23961286, 23962194..23962302,23962460..23962605,23962709..23962927, 23963027..23963239,23963348..23963437,23963534..23963737) /locus_tag="TCM_045338" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene14343; paralog of Thecc1EG040865t1" /codon_start=1 /product="Annexin-like protein RJ4 isoform 1" /protein_id="EOY19934.1" /db_xref="TAIR:AT5G12380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51074" /translation="MATLIAPDHPSAVEDAEALQKACKGICIDILQLDHAIIQKTLLN NEKDLIKKLSEKWLKRGSLETQRENSPKQMATIDVPHQVSFLEDAEALRKACQGWGTD EKAIISVLGHRNAAQRKQIRLAYEELYQEDLIKRLESELSGDFEKAVYRWVLDPADRD AVLANVAIKKISPDHHVVIEISCTRSPEELLAVRRAYQARYKHSLEEDVAAHTKGDIR KLLVALVSAFRYDGEEINTRLANSEANILHDAIKDKAFNHEEVVRILSTRSKMQLMAT FNRYRDDQGTTITKKLLGESGDEFLVALRTAVRCFNDPKKYFEKVLRNSIKGIGTDED ALTRVIVTRAEKDLKEIKDLYHKRNSMPLEQVVAKDTSGDYKAFLLTLLGKED" CDS join(23960255..23960327,23962460..23962605, 23962709..23962927,23963027..23963239,23963348..23963437, 23963534..23963737) /locus_tag="TCM_045338" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene14343; paralog of Thecc1EG040865t1" /codon_start=1 /product="Annexin-like protein RJ4 isoform 2" /protein_id="EOY19935.1" /db_xref="TAIR:AT5G12380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51074" /translation="MATLIAPDHPSAVEDAEALQKACKGWGTDEKAIISVLGHRNAAQ RKQIRLAYEELYQEDLIKRLESELSGDFEKAVYRWVLDPADRDAVLANVAIKKISPDH HVVIEISCTRSPEELLAVRRAYQARYKHSLEEDVAAHTKGDIRKLLVALVSAFRYDGE EINTRLANSEANILHDAIKDKAFNHEEVVRILSTRSKMQLMATFNRYRDDQGTTITKK LLGESGDEFLVALRTAVRCFNDPKKYFEKVLRNSIKGIGTDEDALTRVIVTRAEKDLK EIKDLYHKRNSMPLEQVVAKDTSGDYKAFLLTLLGKED" CDS join(23960255..23960327,23962493..23962605, 23962709..23962927,23963027..23963239,23963348..23963437, 23963534..23963737) /locus_tag="TCM_045338" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene14343; paralog of Thecc1EG040865t1" /codon_start=1 /product="Annexin-like protein RJ4 isoform 3" /protein_id="EOY19936.1" /db_xref="TAIR:AT5G12380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51074" /translation="MATLIAPDHPSAVEDAEALQKACKVLGHRNAAQRKQIRLAYEEL YQEDLIKRLESELSGDFEKAVYRWVLDPADRDAVLANVAIKKISPDHHVVIEISCTRS PEELLAVRRAYQARYKHSLEEDVAAHTKGDIRKLLVALVSAFRYDGEEINTRLANSEA NILHDAIKDKAFNHEEVVRILSTRSKMQLMATFNRYRDDQGTTITKKLLGESGDEFLV ALRTAVRCFNDPKKYFEKVLRNSIKGIGTDEDALTRVIVTRAEKDLKEIKDLYHKRNS MPLEQVVAKDTSGDYKAFLLTLLGKED" gene complement(23963532..23977846) /locus_tag="TCM_045339" /note="dbxref CacaoGD:Thecc1EG045339" mRNA complement(join(23963532..23964489,23964775..23964852, 23964937..23965008,23965097..23965196,23965309..23965349, 23965447..23965517,23965632..23965711,23965834..23965885, 23966525..23966580,23966665..23966710,23966917..23966968, 23967132..23967233,23967343..23967397,23967505..23967581, 23968232..23968282,23968434..23968525,23968617..23968746, 23968821..23968895,23969157..23969228,23969328..23969417, 23969849..23969904)) /locus_tag="TCM_045339" /product="Xylose isomerase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:27766.m000154" /inference="similar to AA sequence:Phytozome:POPTR_0018s10460.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7705t12; inference alignment:Newbler:10:TSA:cgbaP1_g02406t00001; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9460t12" mRNA complement(join(23963713..23964489,23964775..23964854, 23965449..23965517,23965632..23965711,23965825..23965885, 23966525..23966580,23966665..23966710,23966917..23966968, 23967132..23967233,23967343..23967397,23967505..23967581, 23968232..23968282,23968434..23968525,23968617..23968746, 23968821..23968895,23969124..23969228,23969328..23969417, 23969849..23969972)) /locus_tag="TCM_045339" /product="Xylose isomerase family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:27766.m000154" /inference="similar to AA sequence:Phytozome:POPTR_0018s10460.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc138t9; inference alignment:Newbler:10:TSA:cgbaP1_g02406t00001; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9460t12" mRNA complement(join(23963981..23964489,23964775..23964852, 23964937..23965008,23965097..23965196,23965309..23965349, 23965447..23965517,23965632..23965711,23965834..23965885, 23966525..23966580,23966665..23966710,23966917..23966968, 23967132..23967233,23967343..23967397,23967505..23967581, 23968232..23968282,23968434..23968525,23968617..23968746, 23968821..23968895,23969124..23969228,23969328..23969417, 23969849..23969913,23973112..23973272,23977378..23977846)) /locus_tag="TCM_045339" /product="Xylose isomerase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:27766.m000154" /inference="similar to AA sequence:Phytozome:POPTR_0018s10460.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02406t00001" CDS complement(join(23964454..23964489,23964775..23964852, 23964937..23965008,23965097..23965196,23965309..23965349, 23965447..23965517,23965632..23965711,23965834..23965885, 23966525..23966580,23966665..23966710,23966917..23966968, 23967132..23967233,23967343..23967397,23967505..23967581, 23968232..23968282,23968434..23968525,23968617..23968746, 23968821..23968895,23969124..23969228,23969328..23969417, 23969849..23969913,23973112..23973202)) /locus_tag="TCM_045339" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Xylose isomerase family protein isoform 1" /protein_id="EOY19937.1" /db_xref="Phytozome:POPTR_0018s10460.1" /db_xref="TAIR:AT5G57655.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKK7" /translation="MLRKLLQPCRKKGSDIYHHIPQLSNSNYHLFSSTLRQLFSPPFQ TPCSVFQSGLVCMTLEKKNMAGRILLLLLCMNAVSFIVNAVPQTCPADLGGKCAEDDD WEGEFFPGIPKIKYEGTSSKNPLAYKWYNAEEEILGKKMKDWLRFSVAFWHTFRGTGA DPFGAPTKYWPWEDGTNSIAMAKRRMRANFEFINKLGVDRWCFHDRDIAPDGKTLEEA NANLDEVVALAKELQGDKIRPLWGTAQLFMHPRYMHGGATSSEVGVYAYAAAQVKKAM EVTHYLGGENYVFWGGREGYQSLLNTDMERELDHLARFLEAAVAYKKKIGFNGTLLIE PKPQEPTKHQYDWDAATTANFLRKYGLLGEFKLNIECNHATLSGHSCHHDLETARING LLGNIDANTGDPQIGWDTDQFMTDIGEATMVMLSVIRNGGLAPGGFNFDAKLRRESTD VEDLFIAHISGMDTLARGLRNAAKLIEDGSLVELVRKRYSSFDTEIGAEIEAGKADFE MLEKLAKEWGEPKVASAKQELAEMIFQSAL" CDS complement(join(23964454..23964489,23964775..23964852, 23964937..23965008,23965097..23965196,23965309..23965349, 23965447..23965517,23965632..23965711,23965834..23965885, 23966525..23966580,23966665..23966710,23966917..23966968, 23967132..23967233,23967343..23967397,23967505..23967581, 23968232..23968282,23968434..23968525,23968617..23968746, 23968821..23968895,23969157..23969228,23969328..23969405)) /locus_tag="TCM_045339" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Xylose isomerase family protein isoform 2" /protein_id="EOY19938.1" /db_xref="Phytozome:POPTR_0018s10460.1" /db_xref="TAIR:AT5G57655.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKK7" /translation="MTLEKKNMAGRILLLLLCMNAVSFIVNAVPQTCPADLGGKCAED DDWEGEGTSSKNPLAYKWYNAEEEILGKKMKDWLRFSVAFWHTFRGTGADPFGAPTKY WPWEDGTNSIAMAKRRMRANFEFINKLGVDRWCFHDRDIAPDGKTLEEANANLDEVVA LAKELQGDKIRPLWGTAQLFMHPRYMHGGATSSEVGVYAYAAAQVKKAMEVTHYLGGE NYVFWGGREGYQSLLNTDMERELDHLARFLEAAVAYKKKIGFNGTLLIEPKPQEPTKH QYDWDAATTANFLRKYGLLGEFKLNIECNHATLSGHSCHHDLETARINGLLGNIDANT GDPQIGWDTDQFMTDIGEATMVMLSVIRNGGLAPGGFNFDAKLRRESTDVEDLFIAHI SGMDTLARGLRNAAKLIEDGSLVELVRKRYSSFDTEIGAEIEAGKADFEMLEKLAKEW GEPKVASAKQELAEMIFQSAL" CDS complement(join(23964454..23964489,23964775..23964854, 23965449..23965517,23965632..23965711,23965825..23965885, 23966525..23966580,23966665..23966710,23966917..23966968, 23967132..23967233,23967343..23967397,23967505..23967581, 23968232..23968282,23968434..23968525,23968617..23968746, 23968821..23968895,23969124..23969228,23969328..23969405)) /locus_tag="TCM_045339" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Xylose isomerase family protein isoform 4" /protein_id="EOY19940.1" /db_xref="Phytozome:POPTR_0018s10460.1" /db_xref="TAIR:AT5G57655.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKK7" /translation="MTLEKKNMAGRILLLLLCMNAVSFIVNAVPQTCPADLGGKCAED DDWEGEFFPGIPKIKYEGTSSKNPLAYKWYNAEEEILGKKMKDWLRFSVAFWHTFRGT GADPFGAPTKYWPWEDGTNSIAMAKRRMRANFEFINKLGVDRWCFHDRDIAPDGKTLE EANANLDEVVALAKELQGDKIRPLWGTAQLFMHPRYMHGGATSSEVGVYAYAAAQVKK AMEVTHYLGGENYVFWGGREGYQSLLNTDMERELDHLARFLEAAVAYKKKIGFNGTLL IEPKPQEPTKHQYDWDAATTANFLRKYGLLGEFKLNIECNHATLSGHRFVICHHDLET ARINGLLGNIDANTGDPQIGWDTDQFMTDIGEATMVMLSVIRKAGKADFEMLEKLAKE WGEPKVASAKQELAEMIFQSAL" mRNA complement(join(23964829..23964852,23964937..23965008, 23965097..23965196,23965443..23965517,23965632..23965711, 23965825..23965885,23966525..23966580,23966665..23966710, 23966917..23966968,23967132..23967233,23967343..23967397, 23967505..23967581,23968232..23968282,23968434..23968525, 23968617..23968746,23968821..23968895,23969124..23969228, 23969328..23969417,23969849..23969972)) /locus_tag="TCM_045339" /product="Xylose isomerase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:27766.m000154" /inference="similar to AA sequence:Phytozome:POPTR_0018s10460.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc138t1; inference alignment:Newbler:10:TSA:cgbaP1_g02406t00001; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9460t12" CDS complement(join(23965102..23965196,23965443..23965517, 23965632..23965711,23965825..23965885,23966525..23966580, 23966665..23966710,23966917..23966968,23967132..23967233, 23967343..23967397,23967505..23967581,23968232..23968282, 23968434..23968525,23968617..23968746,23968821..23968895, 23969124..23969228,23969328..23969405)) /locus_tag="TCM_045339" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Xylose isomerase family protein isoform 3" /protein_id="EOY19939.1" /db_xref="Phytozome:POPTR_0018s10460.1" /db_xref="TAIR:AT5G57655.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKK7" /translation="MTLEKKNMAGRILLLLLCMNAVSFIVNAVPQTCPADLGGKCAED DDWEGEFFPGIPKIKYEGTSSKNPLAYKWYNAEEEILGKKMKDWLRFSVAFWHTFRGT GADPFGAPTKYWPWEDGTNSIAMAKRRMRANFEFINKLGVDRWCFHDRDIAPDGKTLE EANANLDEVVALAKELQGDKIRPLWGTAQLFMHPRYMHGGATSSEVGVYAYAAAQVKK AMEVTHYLGGENYVFWGGREGYQSLLNTDMERELDHLARFLEAAVAYKKKIGFNGTLL IEPKPQEPTKHQYDWDAATTANFLRKYGLLGEFKLNIECNHATLSGHRFVICHHDLET ARINGLLGNIDANTGDPQIGWDTDQFMTDIGEATMVMLSVIRNVYGERVQMLRTCSLL ILVEWTPWPVDSEMLPS" mobile_element 23973426..23973601 /note="source:CACAO_on_E683_scaffold_9 1 176" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23973769..23973843 /note="source:CACAO_on_E683_scaffold_9 2300 2373" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23974811..23975331 /note="source:CACAO_M_E71405_F316_scaffold_10 4800 5319" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23975283..23977858 /note="source:scaffold_9_CACTA_0934 7061 9636" /mobile_element_type="transposon:TIR/CACTA" gene 23980803..23982870 /locus_tag="TCM_045340" /note="dbxref CacaoGD:Thecc1EG045340" mRNA 23980803..23982870 /locus_tag="TCM_045340" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045345t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage" CDS 23980979..23982319 /locus_tag="TCM_045340" /note="paralog of Thecc1EG045345t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19941.1" /translation="MATQDRDIHQTLGQLNQTLSMIDQNLDQVSQDSSTKVLNGLAEA AAKLKANQEDLKEVFYELLTPFYQPGEGNDHNLDLSQLQDEVLKVIETKGEDELVGLV EGLEGLKKRGDELNERVIELMRDYDIVPKCSGIEESYKENKPMDLESLAFTKEDGKEK SQGLKRKLEIGDFSFYVVATQLYGFPWDAAMEIKTSLGHKGLVNSNRVFLEDEDQTVF DEDSDLDDDGELQEKDEGELKWVRVKKLKQVFEELKKKIDLNVSQKASDSVAEFDPVT VNLRIRFLKVIRNWIFHIESVFIDLMTEIYHVFSVNEAQETIFQDLKSKLKHMMEIYL GMVPISVYKIIYMMENPEELKRRGLVIRMAKLFRVQEKILYKKMNLKRRMDQAHKIIM RLRSMLVPAGDLSYTGLIKEVESGSYEKLLSESEKELRDIQRNLDVVLSKLKIK" mobile_element complement(23985522..23986367) /note="source:scaffold_5_CACTA_0615 1297 2220" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23988372..23989381) /note="source:CACAO_on_E683_scaffold_9 1320 2300" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23989154..23989598 /note="source:INTACT639F_F363_scaffold_5-int 8115 8571" /mobile_element_type="retrotransposon:LTR/Copia" gene 23989711..23991824 /locus_tag="TCM_045342" /note="dbxref CacaoGD:Thecc1EG045342" mRNA 23989711..23991824 /locus_tag="TCM_045342" /product="UDP-glucosyl transferase 73B3" /inference="alignment:exonerate- protein:2:ricco:29801.m003142.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045347t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s31040.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6557t1" CDS 23990300..23991748 /locus_tag="TCM_045342" /note="paralog of Thecc1EG045347t1" /codon_start=1 /product="UDP-glucosyl transferase 73B3" /protein_id="EOY19942.1" /db_xref="Phytozome:POPTR_0001s31040.1" /db_xref="TAIR:AT4G34131.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GHC1" /translation="MSCKNRQLQIFFLPFMAHGHMIPFIDLAMLFAAKGVKTTIITTT LNVPHISKVTERAKNLGYEINILVTYFPSVEAGLPEGCESYDQASSPDMQFKFFTATT MLREPLAHLLQAHRPDCLVADMFFPWVTDVAAAFGIPRIVFHGTCVFSLSATEHIRLY EPHKKVSSDSEPFVIPNFPGEIKLTRSQMPDFVRQETGFTKFYSESKETELKCYGVIV NSFYELESAYADHYTKVLGRRAWHVGPISLRNKGTIDKTERGKKTCIDENECLAWLNS KKPNSVVYICFGSVTNFSSSQLLEIATGLEASGQQFIWVVRKEMKNEEKEDWLPEGFE KRMEGKGLIIRGWAPQVLILDHEAIGGFVTHCGWNSTLESVCASVPVVTWPVAAEQFY NEKLLTQILRIGIGVGAQKWARLVGDFVKREAIEKAVTEIIVGDRADEMRSRAKALAE SARKAVEKGGSSDSDLNALIQELTARALKTYK" mobile_element 23991998..23994088 /note="source:scaffold_5_CACTA_0615 173 2257" /mobile_element_type="transposon:TIR/CACTA" gene 23994461..24007840 /locus_tag="TCM_045343" /note="dbxref CacaoGD:Thecc1EG045343" mRNA join(23994461..23994812,23999986..24000583, 24002840..24003207,24003310..24003815,24004118..24004307, 24007481..24007840) /locus_tag="TCM_045343" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" mobile_element complement(23995680..23997618) /note="source:CACAO_Again_on_S_E283_scaffold_10 1 1939" /mobile_element_type="transposon:TIR/hAT" CDS join(24000222..24000583,24002840..24003207, 24003310..24003815,24004118..24004307,24007481..24007590) /locus_tag="TCM_045343" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19943.1" /translation="MLGVCGVAPFNEALATIVHPTEGMEKCYDIWVLNGYSWTKQLTI GPILGAERLLALWKNGELLLLSENNTLVMFDPCTGELHDFGIHMSKYTMWLVVYAESI IRIKGISEYDAKLTRQVLLKIFQALSQLHQTLFMIDQKLDQVSQHSSTKEHNGLAEAA AKLKSNQEDLKEIFYGLRDEVLGMIGTKEKEDDLKDLAVGLGSLKSKGDELNERVIES MRDYNIVPKCSGIEEGYKPLDFESPAMEIKTSLEHRRLFNSNLLFLEAEDQIVLDEDL GELEEKDEEELKWLRVKKLKQIFQELKKKIDLNVSSKASDSGDELGPEPVNLGIIFLK VIRNWTFHIEYVLIDLLSKIYYIFSVNDELETISQDLKSNLKHMMEIYLGMVPISVYK IIYMMENPEELKRKGLVIRMCCWCIAFFNEALATIVHPRDGMEKCYSIWVLNGYSWTK KLTIGPIVGVERPLALWKNGELFQLSVPEYRIWHEPSFEKFTSHIDYLIEMNIRVVRN LLK" mobile_element 24005256..24005321 /note="source:INTACT1432F_F101_scaffold_9-int 13519 13584" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 24005268..24005534 /note="source:scaffold_9_CACTA_0934 5778 6025" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24005306..24006438) /note="source:CACAO_M_E33462_F82_scaffold_4 1791 2843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24005756..24008315 /note="source:scaffold_9_CACTA_0934 7061 9636" /mobile_element_type="transposon:TIR/CACTA" gene 24007891..24013471 /locus_tag="TCM_045344" /note="dbxref CacaoGD:Thecc1EG045344" mRNA join(24007891..24007923,24010990..24013471) /locus_tag="TCM_045344" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045329t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS 24011372..24012730 /locus_tag="TCM_045344" /note="paralog of Thecc1EG045329t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19944.1" /translation="MATEDRDIHQTLGQLNQTLSVIDQNLDQVSQDSSTEVLNGLAEA VAGLKANQEELKDVFYELLTPFFQPGEGNSHNRDLSQLQDEGLRVIETEGEDELVGLV DGLEGLKKRGDELNERVIELMRDYNVVPKCSGGIEESYKENKPMDLESLAFTKEDGQE ESQGPKRNLESRDFSFYVVATHLYGFPWNVAMEIKRSLGHRTLVESERLFLEDEDHIV LDEDSDSDDDGKLQEKDAGELKWVRVKKLKQIFEELKKKIYIKEEIDLNVSPKASDSG DELDPVNVNLRIRFLKVIRNWIFHIESVFVDLMFEIYYMFPGNDAEENIFQDLKSKLE DMMEIYLGMVPISVYKIIYMMENTEGANLEALMKMMTTLLGSNEEILYEKMNLNDRMD QAHKIILRLSSMLVTADLSYTRFIKEGESATNEKLLSESEEELRDIQRNIDRVKSELK IK" gene 24013521..24023260 /locus_tag="TCM_045345" /note="dbxref CacaoGD:Thecc1EG045345" mRNA join(24013521..24014008,24016248..24018110, 24023236..24023260) /locus_tag="TCM_045345" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045340t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage" CDS 24016686..24018026 /locus_tag="TCM_045345" /note="paralog of Thecc1EG045340t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19945.1" /translation="MATQDRDIHQTLGQLNQTLSMIDQNLDQVSQDSSTKVLNGLAEA AAKLKANQEDLKEVFYELLTPFYQPGEGNNHNLDLSQLQDEVLKVIETKGEDELVGLV EGLEGLKKRGDELNERVIELMRDYDIVPKCSGIEESYKENKPMDLESLAFTKEDGKEK SQGLKRKLEIGDFSFYVVATQLYGFPWDAAMEIKTSLGHKGLVNSNRVFLEDEDQTVF DEDSDLDDDGELQEKDEGELKWVRVKKLKQVFEELKKKIDLNVSQKASDSVAEFDPVT VNLRIRFLKVIRNWIFHIESVFIDLMTEIYHVFSVNEAQETIFQDLKSKLKHMMEIYL GMVPISVYKIIYMMENPEELKRRGLVIRMAKLFRVQEKILYKKMNLKRRMDQAHKIIM RLRSMLVTAGDLSYSGLIKEVESGSYEKLLSESEKELRDIQRNLDVVLSKLKIK" mobile_element complement(24021892..24022475) /note="source:scaffold_5_CACTA_0607 6066 6665" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24022578..24024038 /note="source:scaffold_5_CACTA_0607 5286 6666" /mobile_element_type="transposon:TIR/CACTA" gene 24026210..24028313 /locus_tag="TCM_045347" /note="dbxref CacaoGD:Thecc1EG045347" mRNA 24026210..24028313 /locus_tag="TCM_045347" /product="UDP-glucosyl transferase 73B3" /inference="alignment:exonerate- protein:2:ricco:29801.m003142.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045342t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s31040.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11884t00001" CDS 24026789..24028237 /locus_tag="TCM_045347" /note="paralog of Thecc1EG045342t1" /codon_start=1 /product="UDP-glucosyl transferase 73B3" /protein_id="EOY19946.1" /db_xref="Phytozome:POPTR_0001s31040.1" /db_xref="TAIR:AT4G34131.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GHC1" /translation="MSCQNRQLQIFFLPFMAQGHMIPFIDLAMLFAAKGVKTTIITTT LNVPHISKVTERAKNLGYEINILVTYFPSVEAGLPEGCESYDQASSPDMQFKFFTATT MLREPLAHLLQAHRPDCLVADTFFPWVTDVAAAFGIPRIVFHGTCVFSLSATEHIRLY EPHKKVSSDSEPFVIPNFPGEIKLTRSQMPDFVRQETGFTKFYSESKETELKCYGVIV NSFYELESAYADHYTKVLGRRAWHVGPISLRNKGTIDKTERGKKTCIDENECLAWLNS KKPNSVVYICFGSVTNFSSSQLLEIATGLEASGQQFIWVVRKEMKNEEKEDWLPEGFE KRMEGKGLIIRGWAPQVLILDHEAIGGFVTHCGWNSTLESVCASVPVVTWPVAAEQFY NEKLLTQILRIGIGVGAQKWARLVGDFVKREAIEKAVREIIVGDRADEMRSRAKALAE SARKAVEKGGSSDSDLNALIQELSARALKTYK" mobile_element complement(24028521..24030338) /note="source:scaffold_5_CACTA_0607 4897 6665" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24029788..24030574 /note="source:scaffold_5_CACTA_0607 5903 6667" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24031945..24032039 /note="source:CACAO_Again_on_E100_scaffold_4 1 95" /mobile_element_type="transposon:TIR/hAT" mobile_element 24032140..24032585 /note="source:CACAO_Again_on_E100_scaffold_4 100 529" /mobile_element_type="transposon:TIR/hAT" mobile_element 24033001..24035287 /note="source:INTACT190_F166_scaffold_7-int 3754 6035" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24033273..24036309) /note="source:CACAO_Again_on_E100_scaffold_4 1021 4033" /mobile_element_type="transposon:TIR/hAT" gene 24037569..24041794 /locus_tag="TCM_045348" /note="dbxref CacaoGD:Thecc1EG045348" mRNA join(24037569..24038592,24038693..24039041, 24041045..24041794) /locus_tag="TCM_045348" /product="F-box and associated interaction domains-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045363t1" /inference="similar to AA sequence:Phytozome:POPTR_0452s00210.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(24037848..24038592,24038693..24039041, 24041045..24041597) /locus_tag="TCM_045348" /note="paralog of Thecc1EG045363t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein" /protein_id="EOY19947.1" /db_xref="Phytozome:POPTR_0452s00210.1" /translation="MSMPITDKELPETLVMEILLRLPVKSLMRFKCVCKSWCSSFQTS YFITNHKNDNLNLLFKGFFGGFKVPHFSLLSTETESKKHGGPNVEFNLQIKENIRMPV PICSGNRSRLTVSGVCNGLLCLHDGYRITLWNPSTREVKLLPESTISLPPFVDCTYFY CMGLGFDRKSDDYKVLVNVINHVHDEERIIPLKYISQIHLYSLGTESWREIPHPKVSF DRLKHLFNIYINGFCHYINGICHWPAFDDSASFNEALATIVHPKSGMEKCYDIWVLNG YLWTKQLTIGPILGVGRPLGFWKNGELFLESENHDLVMFDPCTGKLQDFGIHMPKCGT QLVVYAESIVPIKGSSEYKANITRGVKFPVNVCKTWCSSFWTSYFITYHKNNNLNLLI WYVDKVPRYSLFSTETKIKKHGGPDEFNLKVKENIHIPVRQTVMGLCNGLLCLHDSYR ITLWNPSMREVKFLPKSTISSPPSTSHTSFYCIGFGFDRKLDDYKILVYVFHYVESKI IFQIHLYSLNTDFCREIPHPNVYIYAPELFSTYQVSLAIP" gene complement(24041949..24045442) /locus_tag="TCM_045349" /note="dbxref CacaoGD:Thecc1EG045349" mRNA complement(join(24041949..24042575,24042665..24043167, 24045314..24045442)) /locus_tag="TCM_045349" /product="Receptor like protein 34" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045353t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s39970.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(24042202..24042575,24042665..24043167, 24045314..24045315)) /locus_tag="TCM_045349" /note="paralog of Thecc1EG045353t1" /codon_start=1 /product="Receptor like protein 34" /protein_id="EOY19948.1" /db_xref="Phytozome:POPTR_0001s39970.1" /db_xref="TAIR:AT3G11010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CBK0" /translation="MSNSLTNCRMLQVLDIGNNINDIFPVGWELFRSFRYLFSIPINP MLFCQVQGGTFLFQIKLRILYLSDNDFSGPLPTRYFESVMAMKSIGEGERELKYLGQK YYQDSVRVTLKGIEVELVRILTIFTTIDLSINSFHGEILEVIGEHRPLKVLNFSLNSL TGRIPTSLARLNLPQNQLVGSIPRGNQFDTFENDSYIGSLGLCGWPLSKKCSSDVAPE TPSSESEGNGDLFLDGLGWKAVVIGYGSGVVVGNAVGYIVFLTGKPRSLVRIIERNHH RKMRKTNQRHRETRNS" gene 24044559..24045977 /locus_tag="TCM_045350" /note="dbxref CacaoGD:Thecc1EG045350" mRNA 24044559..24045977 /locus_tag="TCM_045350" /product="F-box and associated interaction domains-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g06890.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045363t1" /inference="similar to AA sequence:frave:gene24289" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 24044642..24045427 /locus_tag="TCM_045350" /note="dbxref frave:gene24289; paralog of Thecc1EG045363t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein" /protein_id="EOY19949.1" /translation="MSMPIIDKELPEILVMEILLRLPVKSLIRFKCVCKSWCFSFQTP YFITNHKNDNLNLLFKDFKISRFSLLSAETKIKRHGGPDVEFNLKVKENIHMPVSICN SSRSRLTVSGVCNGLLCLQDGYRITLWNPSTREVKLLPKSTISLPPSVESTYFHCMGF EFDPKSDDYKVLVNVINRVHDEERIISFKYINQIHLYSLSTDSWKEIPHPKVLFYGLH HLFITYINGICHYINGICHWPAFGDSGDLILSFDMAEEVFSTS" gene 24048187..24052978 /locus_tag="TCM_045351" /note="dbxref CacaoGD:Thecc1EG045351" mRNA join(24048187..24048696,24051159..24051515, 24051786..24051814,24052386..24052978) /locus_tag="TCM_045351" /product="F-box and associated interaction domains-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400043046" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045362t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(24048347..24048696,24051159..24051515, 24051786..24051814,24052386..24052651) /locus_tag="TCM_045351" /note="paralog of Thecc1EG045362t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein" /protein_id="EOY19950.1" /translation="MSNVECSWCIASFSDALATIVHSRRGMEKCYDIWVLNEYSWPKQ LTIGPILGVRRPLAFWNIGKLLLESENHKLVMFDPCTGELQDFGIHTPKYTMQLVVIW GSSEHEAKITRQVQLCLWCIAPFNEALATIVHPTEGMEKCYDIWVLNGYSWTKQLTIG PILGVERPLALWKNGELFLLSENNTLVMFDPCTGELQDFGIHMSKYTMRLVVYAESII PIKGISEYDAKLTRQVLLCRNHEMLTPSRGHGMQSPLTVGLSDWSNCPELGLLGETLG AADFLPSGSVLVMQQFSPLPSAPKKIVSSARKKGLFKTSGQPSAVPFVNHRKADDYY" mobile_element 24049571..24049634 /note="source:INTACT690_F13_scaffold_1-int 7040 7103" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24057291..24059692 /locus_tag="TCM_045352" /note="dbxref CacaoGD:Thecc1EG045352" mRNA join(24057291..24058774,24059043..24059692) /locus_tag="TCM_045352" /product="F-box and associated interaction domains-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045363t1" /inference="similar to AA sequence:frave:gene31387" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(24057867..24058774,24059043..24059517) /locus_tag="TCM_045352" /note="dbxref frave:gene31387; paralog of Thecc1EG045363t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein" /protein_id="EOY19951.1" /translation="MPVSICSGSRSRLTVAGVCNGLLCLHDGYRINLWNPSTREVKLL PESTISLPPSVDSTYFYCMGLGFDRKSDDYKVLVNVVNRVHDEERIIAFKYISQIHLC SLSTESWREIPHPKVSFDRLKYLFNIYINGFCHYINGICHWPAFDDSGDLILSFDVAE EVFSTSCLPNFGIRPIASFNEALATIVHPIRGMEKCYDIWVLNGCLWTKQLTIGPILG VGRPLGFWKNGELFLERENHDLVMFDPCTGELQDFGIHMPMCSTQLVVYAESIVPIKG SSEYKANITREVKLPVKKLVSTASILFLNTDSWREIPHPNVYIYAPELFSTYLNEIYN WKAIDDDVGDLILSFDMAEDVFSTLPLPNFGMSNDECLWHITSFNEAAAVTVSPTTGM ENKYDIWVLSGHSWTKQLTIGSIFGRPLAFWKNGELLLESENDTLVMFDTCTGELQDF GITCLSTQGS" gene complement(24060826..24062035) /locus_tag="TCM_045353" /note="dbxref CacaoGD:Thecc1EG045353" mRNA complement(join(24060826..24061627,24061705..24062035)) /locus_tag="TCM_045353" /product="Receptor like protein 34" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g005105.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045349t1" /inference="similar to AA sequence:Phytozome:GSVIVT01020334001" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(24061064..24061627,24061705..24061971)) /locus_tag="TCM_045353" /note="paralog of Thecc1EG045349t1" /codon_start=1 /product="Receptor like protein 34" /protein_id="EOY19952.1" /db_xref="Phytozome:GSVIVT01020334001" /db_xref="TAIR:AT3G05660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CBK0" /translation="MTYSPIGWELFRSFRYLFSIPINSMLFCQVQGGTFLFQMKLRSL DRSDNDFSVPLPTGYFESVMAMKSIGVGERELKYLGQEYYQDSVRLSWRDSRSNRRAS CIESAKLFPQQPYRTNTNISGNLTVLESLDLSSNNLTGEIPGKLTCLTFLARLNLSQN QLVGSIPQGNQFDTFANDSYIGNLGLCGWPLSKKCSSDEAPEAPSSESEGNGDLFLDG FGWEAVVIGYGSGVVVGNAVGYIVFLTGKPRSLVRIIERNHHRKMRKTNQRHRETRNS " mobile_element 24064507..24065003 /note="source:CACAO_M_S_E65806_F326_scaffold_5 3 499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24066302..24068893) /note="source:INTACT795_F74_scaffold_10-int 1 2592" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24070301..24071525 /locus_tag="TCM_045356" /note="dbxref CacaoGD:Thecc1EG045356" mRNA 24070301..24071525 /locus_tag="TCM_045356" /product="F-box and associated interaction domains-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0452s00210.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045363t1" /inference="similar to AA sequence:frave:gene27268" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc11125t1" CDS 24070451..24071266 /locus_tag="TCM_045356" /note="dbxref frave:gene27268; paralog of Thecc1EG045363t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein" /protein_id="EOY19953.1" /translation="MSMPRTDKQLPETLVMEILLKLPVKSLVRFKCVRKSWCSSFQTS YFITSYKNNNLNFLVKHIENVPCLSLFSTETEIKKHGGSGVELNLKDKENIPMPVSIS SSAPITMFGPCNGLLCLDDGCGITLWNPSTREVKVVPKSSISRPASAYCTYFSCIGFG FDSKSDDYKILDKVTHRFQSESTHQIHLYSLNTNSWREIPHPNFRINPVMFNTYINGI YYWQVVGGDDGSYLIVSFNMAEEVFSTIPFPNFGMSKAECWWKAWEIVVTYGS" gene complement(24075092..24076646) /locus_tag="TCM_045357" /note="dbxref CacaoGD:Thecc1EG045357" mRNA complement(join(24075092..24075540,24075639..24075831, 24076107..24076646)) /locus_tag="TCM_045357" /product="Ribonuclease 2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045364t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02161t00002" CDS complement(join(24075215..24075540,24075639..24075831, 24076107..24076370)) /locus_tag="TCM_045357" /note="paralog of Thecc1EG045364t1" /codon_start=1 /product="Ribonuclease 2, putative" /protein_id="EOY19954.1" /translation="MHNCLLLLAALVFLPFTVGQAPFDLYKLSLRWPPSECNIGQLKC TPTVLNYWVIHGIWPTYENNTAVPKYDKTNNPCTHNPTKENQIQAKLSSIKNTLTQFW PSLRNYADDNTNLKDWIHEWKFHGQCSDYPTDPLSYFNSALSLRRKNDLAGTRIQPRE EPYQAKEIVDAVKQILGATPEITCNTHRPSGMIQLREVRMCFKRAKPPTEPRDCPIQF SGTCNKESDHIRVPPAPSPGHSQVPWLPINIFLLAFCLGIVI" mobile_element 24077001..24078387 /note="source:scaffold_8_CACTA_0863 1 1451" /mobile_element_type="transposon:TIR/CACTA" gene complement(24077324..24084717) /locus_tag="TCM_045358" /note="dbxref CacaoGD:Thecc1EG045358" mRNA complement(join(24077324..24077660,24078265..24078388, 24078757..24078838,24079729..24079826,24080471..24080628, 24081542..24081574,24081677..24081739,24082569..24083723, 24084417..24084486)) /locus_tag="TCM_045358" /product="F-box and associated interaction domains-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g06880.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045366t1" /inference="similar to AA sequence:ricco:30131.m007064" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6837t5" mobile_element 24078895..24079274 /note="source:scaffold_8_CACTA_0863 1 369" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(24079813..24079826,24080471..24080628, 24081542..24081574,24081677..24081739,24082569..24083704)) /locus_tag="TCM_045358" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m007064; paralog of Thecc1EG045366t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein isoform 1" /protein_id="EOY19955.1" /translation="MLMPISNHELPEIMVIDILLRLPVKSLMRFRCVCKSWCSSFQTS EFITNHRNKNLNLLLMLHDEVPYFSLLSTEAKIKEYGEPEVEFNLKVKENIHMLDFDQ LTVSGPCNGLLCVHDNYSIILWNPSTREVKVLPESTISRPPATDDTYFGFVGFGFDRN SNDYKVLRCVNNCVLEEDGFAVLEFIYQIDLYSLRTDSWREIAHPDVFVYNPYLFNAY INGIYYWEATGDDGDLILSFDMVEEVFSTLSLPNFGMSKAECSWCIASFKEALATIVH PRIGMEKCYDIWILNGYSWTKQLTIGPILGVEMPLGFWKNGELFLESENHKLVMFDPC TGQLRDFGIYMSQDSTQQLVVYAESIVSIRGSLEYEANITREVQVQKSTLRRPLIIRM LASTITWGWLGCLKRIFLWMAKRGYEIAQSNAAWILDKYGEHNMWMDESGLCTDAERH QRAHSLSWQASEQESKT" mRNA complement(join(24081429..24081739,24082569..24083723, 24084417..24084717)) /locus_tag="TCM_045358" /product="F-box and associated interaction domains-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g06880.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045366t1" /inference="similar to AA sequence:ricco:30131.m007064" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6837t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6837t5" CDS complement(join(24081673..24081739,24082569..24083704)) /locus_tag="TCM_045358" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m007064; paralog of Thecc1EG045366t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein isoform 2" /protein_id="EOY19956.1" /translation="MLMPISNHELPEIMVIDILLRLPVKSLMRFRCVCKSWCSSFQTS EFITNHRNKNLNLLLMLHDEVPYFSLLSTEAKIKEYGEPEVEFNLKVKENIHMLDFDQ LTVSGPCNGLLCVHDNYSIILWNPSTREVKVLPESTISRPPATDDTYFGFVGFGFDRN SNDYKVLRCVNNCVLEEDGFAVLEFIYQIDLYSLRTDSWREIAHPDVFVYNPYLFNAY INGIYYWEATGDDGDLILSFDMVEEVFSTLSLPNFGMSKAECSWCIASFKEALATIVH PRIGMEKCYDIWILNGYSWTKQLTIGPILGVEMPLGFWKNGELFLESENHKLVMFDPC TGQLRDFGIYMSQDSTQQLVVYAESIVSIRGSLEYEANITREVQVQKSTLRRPLIIRM LASTITWG" gene complement(24082367..24142196) /locus_tag="TCM_045366" /note="dbxref CacaoGD:Thecc1EG045366" mRNA complement(join(24082367..24082569,24139643..24140942, 24141742..24142056)) /locus_tag="TCM_045366" /product="F-box and associated interaction domains-containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30131.m007064.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045358t1" /inference="similar to AA sequence:ricco:30131.m007064" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6837t9; inference alignment:Newbler:10:TSA:cgbaB_g00073t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00519t00001" gene complement(24084919..24107367) /locus_tag="TCM_045360" /note="dbxref CacaoGD:Thecc1EG045360" mRNA complement(join(24084919..24085756,24085887..24085958, 24086043..24086267,24086366..24086584,24087284..24087456, 24087979..24088182,24088464..24088536,24089824..24090697, 24090776..24090999,24091132..24091931,24092019..24092585, 24093186..24093247,24093465..24094228,24094787..24095418, 24096408..24096435,24096638..24097112,24097584..24098023, 24098556..24098660,24098751..24099265,24107162..24107367)) /locus_tag="TCM_045360" /product="RNA-directed DNA polymerase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039148t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6847t1" CDS complement(join(24085556..24085756,24085887..24085958, 24086043..24086267,24086366..24086584,24087284..24087456, 24087979..24088182,24088464..24088536,24089824..24090697, 24090776..24090999,24091132..24091931,24092019..24092585, 24093186..24093247,24093465..24094228,24094787..24095418, 24096408..24096435,24096638..24097112,24097584..24098023, 24098556..24098660,24098751..24099215)) /locus_tag="TCM_045360" /note="paralog of Thecc1EG039148t1" /codon_start=1 /product="RNA-directed DNA polymerase, putative" /protein_id="EOY19960.1" /db_xref="TAIR:AT2G38750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q2J0" /translation="MASSSAGLLNIYINDYEIELQMRQIQQEKGDCLTQGHISILPER VHLDLQQNDFTEMVGIWEQWRRAHRDNFQNKYGHIAWLLYVPVDDQMLRAIVQFWDPS YRCFVFNKVDMTPTIEEYSSLLRIDHMQPDKIYWRAQKTGHRRKLAKLLGMTTDEQGL LAFAMAIYDLVVFPKVLGHVEVLVIDFFDQGRVTDEVTTGYHTWHDQRVKNVIHPPKN PSKHPVNPEPQDVLLESELTRKRLEKKMMNIKRRHEDELKEVKKETARKVRVALKERD EWQSKFEKVSVANSSLLARIQELQSANNALQHEVRRQGQTIQELKNDCDMLETAMEGY KAQYNTRARSKIMGDEHSERMDKIEKKQEEIMGQLSKILELISTDKGKKATGSSGTPE DVQQTETNTDPVYPPGFTPPPTRNASIPMPSVGQYPFFGMPIGPPPTYAQQRPIGGAS PSDLISVPDLDDPKEQEKLKCGSVESKDNPDTHQKFNLFKERLRMIALLVLQQNGVNA IEREVYDKRNIREVETSMEKIFEALVKADMLEVWPECPNVNDSRDIQRLCCLYHKGCV GHSIQDCSSFRKEVQRMMDESKIKFYMEVSESAVNMISKESTHPMKIKPLTIFYEPKG EFVEDKTHAKMIIEVPKPFLYKDNKAVPWNYNCSVQVSKAKKWIAESQDDAANITSIG GITRSGCCYSPEAVENLKNEKGKEKEQSPRKERVMDIAPSYNYLLGRPWIHMVGAIPS SLHQKVKFIVEGKIVCVNGEEDLLISKPADTPYVEVAEEVPECSFRSFEFVNTTYVGE GTTPPIPRLSKTTKMVVSQILGKGYRAGAGLGKELQGIRSPIRTTKNEERFGLGYKPT KKEREEMIAERRKERLARFKGHELEIQGMTYPHLYETFRSGGCIFPELLTVGSRESVS TLGEAFSDLLICATEEGEEQSGNVDGIPTTYLGPPNLKLSSWTTMSLPVTCDSISKIP NNEYEDDNDSGFEVNFEKGYNQIKMAPKDREKTTFITMWGTFCYKVMPFGLKNAGATY QRAIVTLFHDMMHKEVEVYVDEMIVKARKTEDHATNLERLFKRLRKFQLRLNPAKCTF GVTSGKLLGFIVSERGIEVDPDKVQAIRDLSPPKTQKEVRGFLGRLNYIARFISQLTL KCDPIFKLLRKHNPGTWNEECQVAFNKVKEYLLRQHDETGKKKRAVYYLSKKFTKYES KYSSLKKMCCALAWTAHRLRQYILYHTTWLIAKLDPIKYIFEKPSLSGRVARWQVLLS EYDIIYVSQKAIKGSAIADFLAERVEEDYEPMEFEFPDEDLMSICQTNGEESKNENWK MFFDGASNALGHGVGVVLVSPEGDHYPVIAKLDFYCTNNVAEYEACVMGLQAAIERKI HILEVYGDSALVIYQLRGEWETRDSKLVRYHKYVSKLIENFDKICFTHLPREENQMAD ALATLAAMFKQYPDQSSENDKKTIRRLAMNFFLDGNILYKRSRDQTLLRCVDSTEARR IVEEVHEGVCGAHASGHKLARQVMRAGIHTPANSLHVLTSPWPFSMWGMDVIGLITPK ASNGHRFILVAIDYFTKWVEAASYANVTQKVVCKFIQKEIICRYGLPKRIITDNASNL NGSMIKEVCAKFKIKHHNSTSYRPKMNGAVEAANKNIKRIIEKMTDIYKDWHEKLPFA LHAYRTTVRTSTGATPFSLVYGMEAVLPIEVEIPSLRVLKEVQLEEAEWVNARYEQLN LIEEKRLTALCHGQLYQKRMMRAYDKKAHSRQFREGELVLKRTLPNQHDPRGKWTPNW EGPFVVKKAFSRGALILAEMDGMEFSNPGSGTCPLMPRDKAIERAPSRAQESGESKGQ LSQVIREKIGFPGLRRRREYQLQIGAKDLLPAQEEEELSGGIEKERGGAAVPADGKGG ELDLGIGVDEKSLVSILTKSHHEHKRSIRRGCSQFFFEDERQFERWNDDAIKTLKGEF KRFKDAVVLSLMHPWERDARLLKKALKKGPQQYGVIVEIACTRSSEQLLGARKAYHSL FERSIEEDLAAHIKDSERKLLVALVSAYRYEGPKVKEDTAKSEAKALLNAIKNADKRR LIEDEEVIRILTTRSKPHLKEVYEQYKKISGKSITEDFEAELFLKETVECLCTPHTYF TKVFDTALRVDANEDAKKALTRLITTQEAGNFKGVSAKFAHKIEERVKGAYKDVLLGV LARGEMNGQV" mobile_element complement(24087617..24087767) /note="source:CACAO_M_S_E38315_F276_scaffold_4 20404 20556" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24087839..24088705 /note="source:CACAO_M_E58877_F5_scaffold_9 19845 20735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24100210..24101906 /note="source:CACAO_M_E49539_F76_scaffold_7 3194 4892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24101482..24102177) /note="source:CACAO_M_S_E38315_F276_scaffold_4 7858 8518" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24102221..24102978 /note="source:CACAO_M_E58877_F5_scaffold_9 19919 20632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24106068..24106121) /note="source:CACAO_M_E58877_F5_scaffold_9 6874 6926" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24106781..24109184 /locus_tag="TCM_045362" /note="dbxref CacaoGD:Thecc1EG045362" mRNA join(24106781..24107953,24108276..24108304, 24108877..24109184) /locus_tag="TCM_045362" /product="F-box and associated interaction domains-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0452s00210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045363t1" /inference="similar to AA sequence:frave:gene13009" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(24106842..24107953,24108276..24108304, 24108877..24109142) /locus_tag="TCM_045362" /note="dbxref frave:gene13009; paralog of Thecc1EG045363t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein" /protein_id="EOY19961.1" /translation="MSMPITDNELSEILVMEILLRLPVKSLMRFKCVCKSWYSSFQTS YFITNHRNNLNLFFKGFDKVPYLSLLSTETEIKKHDEQDVRFNLKVKEKIHMPVSICN SWRLTVSGPCNGLLCLHDGYTITLWNPSTREVKLLPESPTPSTDYTYFFCIGFGFDRK FDDYKILVKVIHCVWSKSTSQIYLYSLNTNSWRELPHPNVFIDPFLFNTYINGIYYWK VTSDDDSYLILSFDMAEEVFSTLPLLNFGMSNARCLWCIAPFNEALATIVHPTEGMEK CYDIWVLNGYSWTKQLTIGPILGVERPLALWKNGELFLLSENNTLVMFDPCTGELQDF GIHMSKYTMRLVVYAESIIPIKGISEYDAKLTRQVLLCRNHEMLTPSRGHGMQSPLTV GLLDWSNCPELGLLGETLGGADFLPSDSVLVMQQSSPLPSAPKKIVSSARKKGLFKTS GQPSTVPFVNHRKADDYY" mobile_element complement(24109182..24111211) /note="source:CACAO_M_E70004_F42_scaffold_10 1006 3035" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24109231..24131239 /locus_tag="TCM_045363" /note="dbxref CacaoGD:Thecc1EG045363" mRNA join(24109231..24109445,24121896..24123176, 24127518..24128490,24130991..24131239) /locus_tag="TCM_045363" /product="F-box and associated interaction domains-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400067721" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045348t1" /inference="similar to AA sequence:frave:gene31525" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" mobile_element complement(24111312..24112316) /note="source:CACAO_M_E70004_F42_scaffold_10 1 1005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24114103..24117050 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3510 6459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24117051..24119379) /note="source:INTACT118_F5_scaffold_9-int 9415 11749" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(24121954..24123176,24127518..24128355) /locus_tag="TCM_045363" /note="dbxref frave:gene31525; paralog of Thecc1EG045348t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein" /protein_id="EOY19962.1" /translation="MSMPITDKELPETLVMEILLRLPVKSLMRFKCVCKSWCSSFQTS YFITNHKNDNLNLLFKGFFGGFKVPHLSLLSTETESMKHGGPNVEFNLKIKENIRMPV SICSGSRSRLTVSGVCNGLLCLHDGYRINLWNPSTREVKLLPESTISLPPSVGSTYFY CMGLGFDRKSDDYKVLVNVVNRVHDEERIIAFKYISQIHLYSLSTESWREIPHPKVSF DRLKYLFNIYINGFCHYINGICHWPAFDDSGDLILSFDVAEEVFSTSCLPNFGMSKAE CFWYIASFNEALATIVHPIRGMEKCYDIWVLNGYLWTKQLTIGPILGVGRPLGFWKNG ELFLESENHDLVMFDPCTGELQDFGIHMPMCSTQLVVYAESIVPIKGSSEYKANITRE VKLPVKKLVSTASILLKKTKSCSMSMPRTDKQLPETLVMEILLKLPVKSLVRFKCVRK SWCSSFQTSYFITSYKNNNLNFLVKHIENVPCLSLFSTETEIKKHGGSGVELNLKDKE NIPMPVSISSSAPITMFGPCNGLLCLDDGCGITLWNPSTREVKVVPKSSISRPASAYC TYFSCIGFGFDSKSDDYKILDKVTHRFQSESTHQIHLYSLNTNSWREIPHPNFRINPV MFNTYINGIYYWQVVGGDDGSYLIVSFNMAEEVFSTIPFPNFGMSKAECWWKAWEIVV TYGS" gene complement(24132099..>24133288) /locus_tag="TCM_045364" /note="dbxref CacaoGD:Thecc1EG045364" mRNA complement(join(24132099..24132546,24132645..24132837, 24133106..>24133288)) /locus_tag="TCM_045364" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045357t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6851t1" CDS complement(join(24132494..24132546,24132645..24132837, 24133106..>24133288)) /locus_tag="TCM_045364" /note="paralog of Thecc1EG045357t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19963.1" /translation="LSLRWPPSECNIGQLKCTPTVLNYWVIHGIWPTYENNTAVPKYD KTNNPCTHNPTKENQIQAKLSSIKNTLTQFWPSLRNYAKDKTNLKDWIHEWKFHGQCS DYPTDPLSYFNSALSLRRKNDLAGTRIQPREEPYQAKERL" mobile_element 24134089..24134193 /note="source:scaffold_8_CACTA_0863 1 127" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24134436..24135474 /note="source:scaffold_8_CACTA_0863 408 1451" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24134677..24135663) /note="source:scaffold_5_CACTA_0593 2443 3418" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24135707..24135741) /note="source:scaffold_5_CACTA_0593 2443 2477" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(24135823..24135925,24136594..24136658, 24136816..24136913,24137592..24137749,24138664..24138696, 24138799..24138861,24139788..24140942,24141742..24142196)) /locus_tag="TCM_045366" /product="F-box and associated interaction domains-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007064.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045358t1" /inference="similar to AA sequence:ricco:30131.m007064" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6837t11" mobile_element 24135982..24136361 /note="source:scaffold_8_CACTA_0863 1 369" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(24136900..24136913,24137592..24137749, 24138664..24138696,24138799..24138861,24139788..24140923)) /locus_tag="TCM_045366" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m007064; paralog of Thecc1EG045358t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein isoform 1" /protein_id="EOY19957.1" /translation="MLMPITNHELPEIMVIDILLRLPVKSLMRFRCVCKSWCSSFQTS EFITNHKNKNLNLLLMLHDEVPYFSLLSTEAKIKEYGEPEVEFNLKVKENIHMLDFDQ LTVSGPCNGLLCVHDNYSIILWNPSTREVKVLPESTISRPPATDDTYFGFVGFGFDRN SNDYKVLRCVNNCVLEEDGFAVLEFIYQIDLYSLRTDSWREIAHPDVFVYDPYLFNAY INGIYYWEAMGDDDDLILSFDMVEEVFSTLSLPNFGMSKAECSWCIASFNEALATIVH PRIGMEKCYDIWILNGYSWTKQLTIGPILGVEMPLGFWKNGELFLESENHKLVMFDPC TGQLQDFGIYMSQDSTQQLVVYAESIVSIRGSLEYEANITREVQVQKSTLRRPLIIRM LASTITWGWLGCIKRIFLWMAERGYEIAQSNAAWILDKYGEHNMWMDESGLCTDAERH QRAHSLSWQASEQESKT" mRNA complement(join(24138571..24138861,24139788..24140942, 24141742..24142056)) /locus_tag="TCM_045366" /product="F-box and associated interaction domains-containing protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30131.m007064.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045358t1" /inference="similar to AA sequence:ricco:30131.m007064" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6837t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6837t11; inference alignment:Newbler:10:TSA:cgbaB_g00073t00001" CDS complement(join(24138795..24138861,24139788..24140923)) /locus_tag="TCM_045366" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30131.m007064; paralog of Thecc1EG045358t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein isoform 3" /protein_id="EOY19959.1" /translation="MLMPITNHELPEIMVIDILLRLPVKSLMRFRCVCKSWCSSFQTS EFITNHKNKNLNLLLMLHDEVPYFSLLSTEAKIKEYGEPEVEFNLKVKENIHMLDFDQ LTVSGPCNGLLCVHDNYSIILWNPSTREVKVLPESTISRPPATDDTYFGFVGFGFDRN SNDYKVLRCVNNCVLEEDGFAVLEFIYQIDLYSLRTDSWREIAHPDVFVYDPYLFNAY INGIYYWEAMGDDDDLILSFDMVEEVFSTLSLPNFGMSKAECSWCIASFNEALATIVH PRIGMEKCYDIWILNGYSWTKQLTIGPILGVEMPLGFWKNGELFLESENHKLVMFDPC TGQLQDFGIYMSQDSTQQLVVYAESIVSIRGSLEYEANITREVQVQKSTLRRPLIIRM LASTITWG" CDS complement(24139784..24140923) /locus_tag="TCM_045366" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m007064; paralog of Thecc1EG045358t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein isoform 2" /protein_id="EOY19958.1" /translation="MLMPITNHELPEIMVIDILLRLPVKSLMRFRCVCKSWCSSFQTS EFITNHKNKNLNLLLMLHDEVPYFSLLSTEAKIKEYGEPEVEFNLKVKENIHMLDFDQ LTVSGPCNGLLCVHDNYSIILWNPSTREVKVLPESTISRPPATDDTYFGFVGFGFDRN SNDYKVLRCVNNCVLEEDGFAVLEFIYQIDLYSLRTDSWREIAHPDVFVYDPYLFNAY INGIYYWEAMGDDDDLILSFDMVEEVFSTLSLPNFGMSKAECSWCIASFNEALATIVH PRIGMEKCYDIWILNGYSWTKQLTIGPILGVEMPLGFWKNGELFLESENHKLVMFDPC TGQLQDFGIYMSQDSTQQLVVYAESIVSIRGSLEYEANITREVQV" gene complement(24142244..24145292) /locus_tag="TCM_045367" /note="dbxref CacaoGD:Thecc1EG045367" mRNA complement(join(24142244..24143113,24143207..24143278, 24143363..24143587,24143686..24143904,24144569..24144741, 24145178..24145292)) /locus_tag="TCM_045367" /product="Annexin 4, putative" /inference="alignment:exonerate-protein:2:frave:gene14344" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045360t1" /inference="similar to AA sequence:ricco:30131.m007218" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10788t1" CDS complement(join(24142877..24143113,24143207..24143278, 24143363..24143587,24143686..24143904,24144569..24144741, 24145178..24145223)) /locus_tag="TCM_045367" /note="dbxref ricco:30131.m007218; paralog of Thecc1EG045360t1" /codon_start=1 /product="Annexin 4, putative" /protein_id="EOY19964.1" /db_xref="TAIR:AT2G38750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GCK4" /translation="MGHPAEVEVLSKALSGIGVDEKSLVSILNKSHHEHKRSIRRGCS QFFFEDERQFERWNDDAIKTLKGEFKRFKDAVVLSLMHPWERDARLLKKALKKGPQQY GVIVEIACTRSSEQLLGARKAYHSLFERSIEEDLAAHIKGSERKLLVALVSAYRYEGP KVKEDTAKSEAKALLNAIKNADKRRLIEDEEVIRILTTRSKPHLKEVYEQYKKISGKS ITEDFEAELFLKETIECLCTPHTYFTKQENLSIDCLSFQVFDTALRVDANEDAKKALT RLITTQEAGYFKGVSTKFAHKIEDRVKGAYKEVLLGVLARGEMNGQV" gene complement(24148997..24150766) /locus_tag="TCM_045368" /note="dbxref CacaoGD:Thecc1EG045368" mRNA complement(join(24148997..24149379,24149615..24150268, 24150403..24150766)) /locus_tag="TCM_045368" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045372t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011638001" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(24149125..24149379,24149615..24150268, 24150403..24150495)) /locus_tag="TCM_045368" /note="paralog of Thecc1EG045372t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative" /protein_id="EOY19965.1" /db_xref="Phytozome:GSVIVT01011638001" /db_xref="TAIR:AT1G15125.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T8J6" /translation="MEAKSQSLVPESYAINGGDGPYSYAQNSLYQRGIMEAAKGMINE EIAMKLDIQKLSLAASEPIRIADLGCSCGANTILAIQNILEALKRKFRTHPTPEFQVF FNDQVSNDFNSLFASLPVLGRQYYAASVPGSFHGRLFPTASLHFVYSSCALHWLSKVP KGVVDKTDPAWNEGRIHYTGAPKEVFEAYSDQFAKDIDSFLQARGKELAPGGLMALLI PAIPDVISHPQITTGSEPELLGSCLVDMEKMGIVSEAKVDTFNLPIYFTYPKELRQII EGNGCFSIKRMEILNIPKQHIVMPEPRQRTLYLRALLEALIEKHFGNEIIDQLFEIY" gene 24150622..24152406 /locus_tag="TCM_045369" /note="dbxref CacaoGD:Thecc1EG045369" mRNA join(24150622..24150645,24151769..24151902, 24152006..24152406) /locus_tag="TCM_045369" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(24151781..24151902,24152006..24152153) /locus_tag="TCM_045369" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19966.1" /translation="MTNILRCSVGSLPFTYLGIPLGVSPRAASTWEPVVDQFRQRPLR ASSKNWRSFNELSYGVEALILPSVNVVATVVDCCLCLYGVATKVV" gene complement(24152408..24156126) /locus_tag="TCM_045370" /note="dbxref CacaoGD:Thecc1EG045370" mRNA complement(join(24152408..24152559,24154095..24154806, 24155024..24155677,24155759..24156126)) /locus_tag="TCM_045370" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G15125.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045372t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011638001" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6504t1" mobile_element complement(24152839..24154090) /note="source:INTACT639F_F363_scaffold_5-int 7461 8573" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(24154468..24154806,24155024..24155677, 24155759..24155917)) /locus_tag="TCM_045370" /note="paralog of Thecc1EG045372t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative" /protein_id="EOY19967.1" /db_xref="Phytozome:GSVIVT01011638001" /db_xref="TAIR:AT1G15125.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T8J6" /translation="MVVKTKKLYIYECALRRFADIWMEAKSQSIMLESYAMNGGDGPY SYAQNSLYQRGLMEAAKGMINEEIAMKLDIQELSLAASEPIRIADLGCSCGPNTILAV QHIIDALKRKFQSHSTPEFQVFFNDHVSNDFNSLFASLSVLGKQYYAASAPGSFHGRL FPKATVHFVYSSYALNWLSKVPERVVDKTDPAWNQGRIHYTGAPKEVLEAYSDQYAKD IDSFLQARVKELAPGGLMALLIPAVPDVITDPQITIGSEFKLVGSCLMDMAKLGMVSE AKVDTFNLPIYFTYPKELRQIIEENGCFSIERMEVLNIPKQHIVMPDLRQRMLYIRAI LEPLIKNHFGNEIIDQLFEIYSRKLSESSIFLNPECQKTTAIFLLLKPI" gene complement(24157091..24159788) /locus_tag="TCM_045371" /note="dbxref CacaoGD:Thecc1EG045371" mRNA complement(join(24157091..24157364,24158319..24158725, 24158879..24159086,24159164..24159395,24159483..24159570, 24159656..24159788)) /locus_tag="TCM_045371" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027124t1" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage" mobile_element complement(24157425..24160418) /note="source:INTACT787_F334_scaffold_10-int 1 2994" /mobile_element_type="retrotransposon:LTR/Unclassified" CDS complement(join(24158336..24158725,24158879..24159086, 24159164..24159395,24159483..24159570,24159656..24159706)) /locus_tag="TCM_045371" /note="paralog of Thecc1EG027124t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19968.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I815" /translation="MRLVRNLAKIPRKSRTPSVKGSVESYPQFMTAAWIMHRRLHELL NLTALRRMRRFNAPDYTTKGPHAFFSKSSGRGGLRGRMAEPESSQSTSERRTGTSFGD TGGDYPEVPTATLEEIVVGLQGFGCQPYEEIDRGNVMVTLGDFMKLKPPSFSGAKSTE DPQVFLDEMDKICTALGCSSRQVVELTSFRLTEASGMTVSDYDIQFTQLSRYASYMVQ TERERIKRFIKRLHRPIYRILVSRRFTSYPEVVDAARKIEAGCTEVGVERERSKRNQG EGSFRYKDPSRSKDVNIVDYQVKRLRSKGIVLVKVIWQNHSVEEAT" gene complement(24162435..24164447) /locus_tag="TCM_045372" /note="dbxref CacaoGD:Thecc1EG045372" mRNA complement(join(24162435..24163171,24163345..24163998, 24164082..24164447)) /locus_tag="TCM_045372" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:frave:gene09421.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045370t1" /inference="similar to AA sequence:TAIR:AT1G15125.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09240t00001" mRNA complement(join(24162585..24163171,24163345..24164021, 24164082..24164127)) /locus_tag="TCM_045372" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:frave:gene09421.2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008381001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045370t1" /inference="similar to AA sequence:TAIR:AT1G15125.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc4328t2; inference alignment:Newbler:10:TSA:cgbaL_g09240t00001" CDS complement(join(24162833..24163171,24163345..24163998, 24164082..24164174)) /locus_tag="TCM_045372" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG045370t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 1" /protein_id="EOY19969.1" /db_xref="TAIR:AT1G15125.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI57" /translation="MEAKSQSIMADSYAMNGGDGPYSYAQNSMYQRGIMETAKRMINE EIAMKLDIQKLSLAASEPIRIADLGCSCGPNTILAIQNILEALKRKFQTHPTPEFQVF FNDQVSNDFNSLFASLPELGRQYYAACVPGSFHGRLFPTASLHFVYSSCALNWLSKVP KEVVDKTDPAWNQGRIHYTGAPKEVFEAYSDQFAKDIGSFLQARVKELAPSGLMALVI PAVPDMISHPHITTGSEFELVGSCLMDMAKMGIVSEARIDTFNLPIYYTYPKELRQII EGNGCFSIERMDMLNIPKQHIAMPDLRQRTVYIRAALEALIEKHFGKKIIDQLFEMYS RKLSESPIFLKPENQKTTAIFVLLKPI" CDS complement(join(24162833..24163171,24163345..24164019)) /locus_tag="TCM_045372" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG045370t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 2" /protein_id="EOY19970.1" /db_xref="TAIR:AT1G15125.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI57" /translation="MPYHFVQRGIMETAKRMINEEIAMKLDIQKLSLAASEPIRIADL GCSCGPNTILAIQNILEALKRKFQTHPTPEFQVFFNDQVSNDFNSLFASLPELGRQYY AACVPGSFHGRLFPTASLHFVYSSCALNWLSKVPKEVVDKTDPAWNQGRIHYTGAPKE VFEAYSDQFAKDIGSFLQARVKELAPSGLMALVIPAVPDMISHPHITTGSEFELVGSC LMDMAKMGIVSEARIDTFNLPIYYTYPKELRQIIEGNGCFSIERMDMLNIPKQHIAMP DLRQRTVYIRAALEALIEKHFGKKIIDQLFEMYSRKLSESPIFLKPENQKTTAIFVLL KPI" mobile_element 24165953..24166069 /note="source:scaffold_9_CACTA_0934 14746 14862" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24167191..24167304 /note="source:scaffold_9_CACTA_0934 14749 14862" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24168421..24168462 /note="source:scaffold_9_CACTA_0934 14746 14787" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24168464..24171279 /note="source:CACAO_Mutator_E161_scaffold_1 1070 3872" /mobile_element_type="transposon:TIR/Mutator" mobile_element 24171381..24172239 /note="source:scaffold_1_CACTA_0009 8882 9251" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24172792..24176713 /note="source:scaffold_1_CACTA_0009 9579 13830" /mobile_element_type="transposon:TIR/CACTA" gene complement(24175110..24182846) /locus_tag="TCM_045375" /note="dbxref CacaoGD:Thecc1EG045375" mRNA complement(join(24175110..24175422,24175582..24175660, 24175775..24175919,24177856..24177914,24178609..24178649, 24180729..24180921,24182202..24182615,24182700..24182846)) /locus_tag="TCM_045375" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14664t00001" CDS complement(join(24175190..24175422,24175582..24175660, 24175775..24175919,24177856..24177914,24178609..24178649, 24180729..24180921,24182202..24182615,24182700..24182711)) /locus_tag="TCM_045375" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19971.1" /translation="MLTLERAPVGYNRATDRNQRRWSQSTRLFGVGFECFTVRSLYTL PPHPSRPKNRGGGVKFHLTSLIPFCLLNFFSFPRFLYSLIKSAPFFPFETLKTILASS LVLINCHRRSLAVIAILLASRQLSLAVADLLSSSLCSSLKISNEIEENINLATNDSTS TPQVHASATEGNARSEVVSSKPQKQKEPSKMSSLVWDHFTKFVDNKDLTKITLEHICE IEPKLKSTLNHPPTNQNRLKLSGVPIVLLVIRHGGQWADGIYKGGESRMWGVGSDLLF AGLMKLVEDVVERNVLAVYVSIKGCETNVMSHEEVEQHGCASSQLLASVQQMQRSDET VKCVMPLSNENTTPEDNNVRLEGDIETLEDNTAFDEGNEDLFVAGEDRFDDNSDDGL" mobile_element complement(24178059..24197084) /note="source:scaffold_10_CACTA_0127 1 19026" /mobile_element_type="transposon:TIR/CACTA" gene complement(24183005..24187366) /locus_tag="TCM_045376" /note="dbxref CacaoGD:Thecc1EG045376" mRNA complement(join(24183005..24183489,24183588..24183659, 24183917..24184141,24184332..24184550,24185002..24185174, 24185367..24185534,24187274..24187366)) /locus_tag="TCM_045376" /product="Annexin 4, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045367t1" /inference="similar to AA sequence:ricco:30131.m007218" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6517t4" CDS complement(join(24183307..24183489,24183588..24183659, 24183917..24184141,24184332..24184550,24185002..24185174, 24185367..24185505)) /locus_tag="TCM_045376" /note="dbxref ricco:30131.m007218; paralog of Thecc1EG045367t1" /codon_start=1 /product="Annexin 4, putative" /protein_id="EOY19972.1" /db_xref="TAIR:AT2G38750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVJ6" /translation="MTYVTFQDDINIFLLCCITHTLKFSTLHYRDHQRMADLEALIKA FSGIGVDENSLISILANSNHEHKKSLRKGYSKFFIEDENGFERLHQSTIKNLKLEFKR FRDAVVLSLLHPWERDARLIEKAMKKGPRHYSVIVEIACTRSSNELLGARKAYHSLFD HSIEEDLASHIKGSERKLLVALVSAYRYEGPKVNDDVAKSEAEILSNAIKNADKRKPI EDEDAIMILSTRSKPHLQAVYEHYNKICGKTITEDLEAEGILKDTVECLCTPATYFTR VLDAALTVDADEESKKALTRVIVTQKELREKEGYVPNKIQGILTGSYKDFILGLVARG EN" gene 24191419..24194856 /locus_tag="TCM_045377" /note="dbxref CacaoGD:Thecc1EG045377" mRNA join(24191419..24191593,24192431..24192698, 24192816..24192961,24193596..24193823,24193936..24194148, 24194253..24194342,24194481..24194856) /locus_tag="TCM_045377" /product="Annexin" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s06210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045338t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s06210.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05747t00001_C2" CDS join(24192548..24192698,24192816..24192961, 24193596..24193823,24193936..24194148,24194253..24194342, 24194481..24194684) /locus_tag="TCM_045377" /note="paralog of Thecc1EG045338t2" /codon_start=1 /product="Annexin" /protein_id="EOY19973.1" /db_xref="Phytozome:POPTR_0001s06210.1" /db_xref="TAIR:AT2G38760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GCK5" /translation="MKSFKKLFTSKSKTHSPASSFKIGGMGSLKVLDVIPSPEDDSEK LKKAFQGLGTDEDEIIMILGHRDASQRKQIRETYQQLYNESLIDALNSELSGDFRTAV ILWTYDPSERDARLANGALKSKKKGVKQLEIIVEMSCASSPQHLVAVRQAYCSLFDCS LEEAIAASVSMPLKKVLLGLVTSYRYDKELVDMDVANLEADRLHEAIKTKELAHDDVV YILSTRNFHQLRTTFECYRKKYGNPIDKDIMKSGKGDLESLLRMVILCIDSPEKHFAE VVGTSIIGLGTDEDSLTRAIVTRAEIDMMKVRGEYFNIYKSNLDDAVIGDTSGDYRKF LVTLLGGKM" gene complement(24194891..24200988) /locus_tag="TCM_045378" /note="dbxref CacaoGD:Thecc1EG045378" mRNA complement(join(24194891..24195426,24195525..24195576, 24196003..24196088,24196212..24196329,24197271..24197362, 24197441..24197533,24198021..24198231,24198327..24198650, 24198978..24199192,24199303..24199659,24200234..24200283, 24200449..24200988)) /locus_tag="TCM_045378" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s24410.1" /inference="similar to AA sequence:Phytozome:GSVIVT01000827001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6643t4" CDS complement(join(24194917..24195426,24195525..24195576, 24196003..24196088,24196212..24196329,24197271..24197362, 24197441..24197533,24198021..24198231,24198327..24198650, 24198978..24199192,24199303..24199659,24200234..24200242)) /locus_tag="TCM_045378" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19974.1" /db_xref="Phytozome:GSVIVT01000827001" /db_xref="TAIR:AT3G07530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SPZ2" /translation="MKFTCLRKGGGFHFPACHMLNVSGFRILLDCPLDLSSLAFFSPV PVAHEAHKSLDTDSVIRKKQKMEKALDANDLVHAEPWYKTVKSLHLWDASFIDVVLIS SPMGMLGLPYLTRTKDFSAKIYVTEATARIGQLLMEDLVSMHMEFRQFYGPEDSCFPQ WLRWEELEVLQYEMKKIALGKDCEELGAWMPLYSADDVKDCMRKVQTLKYAEEACYNG TLIIKAFSSGLEIGTCNWTINGPKRNIAYITNSIFVSTHAADFDFVGLRGNDLIIYSD FFSLGAAENMENDNTYFDPVASLNFSDDVNNLEEMSASLLKDDESTEEMEKLAFICTC ALDSVRGGGSVLIPIDRLGIILGLLEQMSVLLESSSAKVPMYIISSVAEELLAFTNII PEWLCKQRQEKLFSGEPLFEHAKLIKERNIHVFPAVHSPELLTNWQEPCIIFSPHWSL RLGPVVHLLRHWCSDPNSLLVLESGVDADIALLPFKPMAMKVLQCSFLSGMRLQKVQP LLKTLQPKLVLFPKDLRCKIQISEANTIFLYSESETLRIPSSKNSTEIEIATDLASKF HWKTLKQETITRLEGELFMDYGKHRLLSGSHPADSKQQRPFVHWGSPDSKGLLTELSK IGINGTIKKVRDDTESESAAGVVEIHEPKKAVIHVGETGTVIISADENLASHIVKAID IVLDGI" gene 24200601..24201205 /locus_tag="TCM_045379" /note="dbxref CacaoGD:Thecc1EG045379" mRNA 24200601..24201205 /locus_tag="TCM_045379" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage" CDS 24200618..24200890 /locus_tag="TCM_045379" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19975.1" /translation="MSVVKPRPISITCDRDWYCAKPTLPLPRESPEGDGRGAGKAAEG EDHRRTGLAKEKREKKGWRNKGKRKRKKKEPVDQGGKGRIRDPTKE" gene complement(24201731..24209266) /locus_tag="TCM_045380" /note="dbxref CacaoGD:Thecc1EG045380" mRNA complement(join(24201731..24203941,24204023..24204544, 24204647..24204859,24204946..24205608,24206020..24206606, 24208682..24209266)) /locus_tag="TCM_045380" /product="Retrotransposon protein, unclassified, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026511t1" /inference="similar to AA sequence:frave:gene24361" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS complement(join(24202559..24203941,24204023..24204544, 24204647..24204859,24204946..24205608,24206020..24206208)) /locus_tag="TCM_045380" /note="dbxref frave:gene24361; paralog of Thecc1EG026511t1" /codon_start=1 /product="Retrotransposon protein, unclassified, putative" /protein_id="EOY19976.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2QLK1" /translation="MATASFSTSTLPVFTSSNYQIWAIKMRAYLKAFDLWEIVELGEA PIQRHANPTLVQTKQHSEERKALRNENVVENALVAKTKNLKVKVGSSKKNENKGTKTG NDKQKKHGDKFDPCPYCKKRNHTSKYCWYRPNVKCRACKQLGHVEKVCKAKKSNAEGQ VAIAEKTKEVEELLFVANLAGELGNNDVWLLDSACSHHMTSNNSLFTDLDTSFRVRVK IENGELLVFASVGTIAIETMAGIRHIANVRYAPYVDQNLLSVGQLAECNYALLFKIGS AQCLTQLVDLSDVWHKRIGHVNFGSLIKMSSEVMVDGLLVIVKPDMLCKVCQYGKQCR KSFPKGRSWKAKKKLELVHLDKSEALMHFFKFKAIVENQAKMKIKTLRSDNGFEFTVV DFEAFLAQFGVEHWLTVTYSPQQNGASERKNRTVVEMARCLLFQNNLPRVFWAEAVNT ANYLLNITYTRVLNFKTPYEMWFACKPSAAHLKTFGCVCYAKVPDEKRSKLDAKSVLD VFIGYSERSKGYSLYNVETNKVVTSNEDQYEAESDSFSDIEDEKNAVRGTSTLQDIYS RCSLAMSKPSSFVEANVDPNWKKAMNSEMKMIEKNNTWVLVNRPDNQHVIGLKWIFKI KLNSDGLVNKYKARLVVKGYAQVYGVDYNETFSLVARHDTIRMLATLVAREGWRIYHL NVKFAFLNGILTEDIYVEQPEGYVEKGSEDKVCKLAKALYGLKLARRAWYERMDEHFK KQGFQRSVSESTLYVKSSEGFVLLIVALYMDDLLITDPDNHHLAEFKSQMMCEFEMID LGLMSYFLGMEVVQAKDHVSLHQTKYAKDLLKRFQMSFCKSVGTSLSFGAKFSKEDGC AKANGQIYRSIIGSLLYLLVTRPDIMFATCLLSRFMQDPSVFHFTRVKRILRYIQGTL NFGLVYKKKESSQLIGYCDNDWAGSVDDSKSTSGFCFSFRSAVFTWNSKKQEVVAQSS TEVEYIACAAALIKPFG" gene complement(24209918..24214662) /locus_tag="TCM_045381" /note="dbxref CacaoGD:Thecc1EG045381" mRNA complement(join(24209918..24210457,24210559..24210792, 24210875..24211153,24211248..24211527,24211616..24211914, 24212753..24212946,24213126..24213177,24213278..24213490, 24213649..24213712,24213978..24214118,24214269..24214662)) /locus_tag="TCM_045381" /product="Early-responsive to dehydration stress protein (ERD4)" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19990.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19990.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc4156t5" CDS complement(join(24210302..24210457,24210559..24210792, 24210875..24211153,24211248..24211527,24211616..24211914, 24212753..24212946,24213126..24213177,24213278..24213490, 24213649..24213712,24213978..24214118,24214269..24214558)) /locus_tag="TCM_045381" /codon_start=1 /product="Early-responsive to dehydration stress protein (ERD4)" /protein_id="EOY19977.1" /db_xref="Phytozome:POPTR_0003s19990.1" /db_xref="TAIR:AT3G54510.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JCY2" /translation="MNPRGLLASAGINKGLALVVLILFSILKKQPSNAPIYYPRPLSK RHPITILPPDPFSPSRFLPSFSWIPRAFRVTEDEILETSGLDALVVIRLFKFGINFFA VCTLIGLLILLPINYGGQNDPSTSYHSMDSCSISNIERGSNMLWVHVICLWFISFYGL YLLYKEYSEILVKRIQKLQNLRDRPDQFTILVRQIPFCTEHKARGCCVDHFFSKHHPY SYHSYQMLYDGKDIEVLLFLRSTLPYMSSKCTKGVEPGKTFKRKIQDLRKKCTVKKHI GEMLLLDECRDESMKAALLEEKLQELCHKIRQLQSEDMLKERELPVSFVTFKSRWGAA LAAQTQQHTNPLLWITGTAPEPSDVSWRNLAVQYKFLPLHKIGVILAASLLTVFFAVP VTAVQGIAKFEKLKKWFPPAMAIQLIPGLSSVVTGYLPSAILKGFIYIVPFAMLAMAK VGGSISESKEEIKACNMVFYFLVGNVFFLSLISGSLLDEIGESFSHPKNLPSHLASLV SSQADFFMTYILTDGLSGFSLEVLQPGLLLWDLIKSHTYCRGKEKDLYLYSLQYFRII PTVSLSILIGIVYAVIAPLLLPFLLVYFYIGYAVYINQVQDVYNTVYDTFGQFWPFIH HYIFVAIILMQVTMIGLFGLKLKPAASISTIPLVLLTIMFNEYCKIRFLPTFQGYPIQ NAVENDELDQKGGQMEASYGKAVGAYRQPCLRPVSFTQSECNLAQPLITSL" mobile_element 24215360..24215489 /note="source:scaffold_4_CACTA_0510 5731 5858" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24216557..24216833) /note="source:CACAO_on_E219_scaffold_4 721 986" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24216832..24216920) /note="source:scaffold_3_CACTA_0396 895 984" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24216917..24217729) /note="source:CACAO_Again_on_E217_scaffold_10 1 794" /mobile_element_type="transposon:TIR/hAT" gene 24219129..24227558 /locus_tag="TCM_045382" /note="dbxref CacaoGD:Thecc1EG045382" mRNA join(24219129..24219176,24220395..24220933, 24221149..24222017,24222106..24222406,24222569..24224570, 24227284..24227558) /locus_tag="TCM_045382" /product="Senescence-associated E3 ubiquitin ligase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s20000.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20000.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6544t1" CDS join(24221223..24222017,24222106..24222406, 24222569..24224022) /locus_tag="TCM_045382" /codon_start=1 /product="Senescence-associated E3 ubiquitin ligase 1" /protein_id="EOY19978.1" /db_xref="Phytozome:POPTR_0003s20000.1" /db_xref="TAIR:AT1G20780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWL6" /translation="MKNTDRRRFPELVSELQALVEEIASLAKESGSERELFSEFARLL NKLAPVLSDIRDNKDVMDTVTIRKAIESLEKELKRAKTLIKTPDSKQPNIWIEDVIQD LGRSIGLVLFASIDLHFDMKERIGALHKEFMTVKFDASLSPSPSPSPSPSNGSAYVSA TASEKEIEEERTEIEEERTEIEEERSNLTIDDAVLQLKYGNDDEFNFALLGFSESIRQ GLITNEWINEEGIISILVNRLGSCKPINRLIILQILKQLALENAENKEKMADAASLSA LVKSLTRDVEERREAVGLLLDLSDLPAVWRRLGRIQGCIVMLVTMLNGDDPIASDNAG KLLNALSSNTQNALHMAEAGYFKPLVHYLKEGSDMSKILMATAMSRMELTDQSRASLG EDGAVEPLVKMFNAGKLEAKLSSLNALQNLSNLSENIQRLITSGIVVSLLQLLFSVTS VLMTLREPASAILARIAQSESILVNQDVAQQMLSLLNLSSPVIQYHLIQALNSIAGHS SASKVRTKMKENGAIQLLLPFLTESNAKIRTGALNLLYTLSKYLPEEMTEQLGESHLI IIVNIISSSPLDSDKAAAVGIMSNIPISNKKVTEVLRKANLLPILVSIMTCTPSTLTS TWHWLAEGVAGILIRFTIPSDKRLQLLAAENEVIPLLVKLVSSGSLAAKCKAATSLAQ LSQNSLSLRKLKKSSWFCVPPSTTAFCGVHDGYCFVKSTFCLVKAGAIPPLIQILEGK DREADEAALNALATLLQDEICENGSNYIAEKAGIQAIIKILESTTVKAQEKALWILER VFNVEAHRVKYGESAQVVLIDLAQNGDPRIKSSTAKLLAQLELLQAQSSYF" mobile_element complement(24227699..24227844) /note="source:scaffold_8_CACTA_0854 46 184" /mobile_element_type="transposon:TIR/CACTA" gene complement(24231050..24239628) /locus_tag="TCM_045383" /note="dbxref CacaoGD:Thecc1EG045383" mRNA complement(join(24231050..24231384,24231485..24231545, 24231758..24231991,24239185..24239628)) /locus_tag="TCM_045383" /product="Cell wall integrity and stress response component 2, putative" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc1148t3" CDS complement(join(24231333..24231384,24231485..24231545, 24231758..24231806)) /locus_tag="TCM_045383" /codon_start=1 /product="Cell wall integrity and stress response component 2, putative" /protein_id="EOY19979.1" /translation="MANHKNQDQTSNDKSPACCPVTRDKGTGKNRSFLEGCLFALCCC WLWDACFDL" gene complement(24239590..24247623) /locus_tag="TCM_045384" /note="dbxref CacaoGD:Thecc1EG045384" mRNA complement(join(24239590..24240696,24240812..24240890, 24242470..24242878,24243857..24243928,24244302..24244373, 24245417..24245507,24246222..24246925,24247495..24247623)) /locus_tag="TCM_045384" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(join(24240456..24240696,24240812..24240890, 24242470..24242878,24243857..24243928,24244302..24244373, 24245417..24245507,24246222..24246334)) /locus_tag="TCM_045384" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19980.1" /translation="MAMLLLVVLKREALLCLEPFMVCGLFLLVERYVVTRLRDVCFGF FYRCGECDFKLDVKCATLTAHKTEVENNTEAIDAFSSSELDFEENSAQVENNTAAIDA FSSSMSDFEDSSDQTWTPQGIYIIITVVAAPPLFHLLAVGAWWLWHSIPLPFSAFLCG AIAATFGLVVVFIFIAHLCCLFLLVWFPGLSVHPCSLSPRSRCTPIDLMFIRSCGCYL LCKVGLCSSSDGWDRSAQPSCPVYSWVAMLLVCGGAISNLFPPSIADIETTCIYYFHI HERSYPNTVRQSKALPYSFPSQFIIQIPRRDASTITLRRINAIGRSLPNNFILQISNK NNLINFPIKICPLTLPQPNILFLS" mobile_element 24243556..24243670 /note="source:scaffold_1_CACTA_0029 7126 7229" /mobile_element_type="transposon:TIR/CACTA" gene complement(24249198..24256032) /locus_tag="TCM_045385" /note="dbxref CacaoGD:Thecc1EG045385" mRNA complement(join(24249198..24251180,24255677..24256032)) /locus_tag="TCM_045385" /product="Cysteine/Histidine-rich C1 domain family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045393t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1099t5" mobile_element complement(24249274..24249334) /note="source:scaffold_2_CACTA_0256 2655 2719" /mobile_element_type="transposon:TIR/CACTA" CDS complement(24249393..24250601) /locus_tag="TCM_045385" /note="paralog of Thecc1EG045393t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein" /protein_id="EOY19981.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MGIRHSSNEHSLSFRNLQNDQKEYCDACTKEISKMAYACRCGFR LHESCASEVQHLPHKIIHPLHSQHDLELKLEVLEDFICDKCLYIFAASGYKCKQCDFS LDLACASSTNDPLPEEKWQRPQDGKKREIQHYSHLHKLTFFQYRKIRNYGYNCSWCEK CLSEVCYGCVSCKFFLRELCRDKVLRTLYHPSHPLRLHYKDIGNNCNACGQDICFLAQ REDILSEKYFGNLSYCCLKCNLFLHFGCTKLLPTLKHKCHEHLVTYFRISKKAKNANS CNACGALCDYDFYRCVECNFNVHLHCVPIPSSIEHRYHRHPLNYMDSVAEDHSEEYYC DICKNERNPAHPVYCCEKCKYITHVHCVLNEVKITCLTFFLFFLCFENQKGKFIKLKA GYINNSTNPR" gene 24256657..24258012 /locus_tag="TCM_045386" /note="dbxref CacaoGD:Thecc1EG045386" mRNA join(24256657..24256846,24256938..24257168, 24257266..24257462,24257676..24258012) /locus_tag="TCM_045386" /product="Aldolase-type TIM barrel family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002432t1" /inference="similar to AA sequence:ricco:29732.m000319" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6762t1" CDS join(24256724..24256846,24256938..24257168, 24257266..24257462,24257676..24257805) /locus_tag="TCM_045386" /note="dbxref ricco:29732.m000319; paralog of Thecc1EG002432t1" /codon_start=1 /product="Aldolase-type TIM barrel family protein, putative" /protein_id="EOY19982.1" /db_xref="TAIR:AT5G48220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7ML42" /translation="MLVLVFLIAIAGISLQSVPSFNHRPRFFIPGSNFPVIRAQLSPK KGEEEDVLNMKEWELGMFQNEIAASQGIRIRRRPPMGPPLHYMGPFDFRLQNEDNTHR SFLEEIIWQKDVEVSHMKEKKPLASLKKFIENAARTRDFVGALKAAHSRTGLPGLIAE VKKGSPTRGILRDEVKKGCFGRRNHKGDSAIDSVWLCIDDLIYTTKDMKRKHGEKVNR CKRRNERA" mobile_element complement(24258015..24258094) /note="source:CACAO_M_E12953_F322_scaffold_3 2043 2128" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24258427..24262055 /locus_tag="TCM_045387" /note="dbxref CacaoGD:Thecc1EG045387" mRNA join(24258427..24258892,24260565..24262055) /locus_tag="TCM_045387" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039275t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037631001" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.43 coverage" mobile_element 24260627..24264568 /note="source:INTACT66_F131_scaffold_7-int 1041 5027" /mobile_element_type="retrotransposon:LTR/Copia" CDS 24261148..24261666 /locus_tag="TCM_045387" /note="paralog of Thecc1EG039275t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19983.1" /db_xref="Phytozome:GSVIVT01037631001" /translation="MKKDLWLINNACSNHLTSDESQFTTLDRSYGSKVEIVDGSFLRI LGKGTVAVETQQGKKFISNVYFVLDANQNLLSVGQLTQNNYDILFKDKFCTIFDPKGE EILTVEIRNKCYPIDWQQSDHAFFSCVNDSELWHNRFGHVNFSSLQTMVTKELVTGLP KIAKPDTVCKIC" gene 24262104..24264445 /locus_tag="TCM_045388" /note="dbxref CacaoGD:Thecc1EG045388" mRNA join(24262104..24262735,24263182..24264445) /locus_tag="TCM_045388" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033858t1" /inference="similar to AA sequence:frave:gene30122" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage" CDS join(24262417..24262735,24263182..24263561) /locus_tag="TCM_045388" /note="dbxref frave:gene30122; paralog of Thecc1EG033858t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19984.1" /translation="MVENTGNYNLLQDGVPEEFDEETNIEDESLAVRGTRSLQEIYAR CSVAIIELASFTEAVKDDRWVQAMNQEMEMIKKNGTWMLVNKPTDQHIIGVKWIYKTK LNADDESTLMNCKEKLKKEFKMSDLGKMNYFLGLQFIQDPDYICLHQSKYTLELLKKF HMENCKAVESPLATNCKLSKDDGAPDAAGTSYRSLIVSLLYLTTSRPDIMFSISLLSC LMQKPSQIHYTAAK" gene 24263647..24267253 /locus_tag="TCM_045390" /note="dbxref CacaoGD:Thecc1EG045390" mRNA join(24263647..24263744,24265101..24265533, 24265736..24265867,24265952..24266107,24267198..24267253) /locus_tag="TCM_045390" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045396t1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc640t1_C2" mRNA join(24265083..24265533,24265793..24265951) /locus_tag="TCM_045390" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045396t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03082t00001; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc640t1_C2" CDS join(24265291..24265533,24265736..24265867, 24265952..24266044) /locus_tag="TCM_045390" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG045396t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19985.1" /translation="MVCRYPKEPLLLITPTSNCFSLEHMDNGVLDNTDDISNEQVWSR SLFAGADRKQSIPNVPRKNQTCKKIPVKETTSIKISKPIVAKLGLNTHHILYFEMWPV NGKKMINDFVKEQKISQGSYGKVVLYPNKNDGTAYAIKIAVVFIYSIRYLIQY" CDS join(24265291..24265533,24265793..24265903) /locus_tag="TCM_045390" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG045396t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY19986.1" /translation="MVCRYPKEPLLLITPTSNCFSLEHMDNGVLDNTDDISNEQVWSR SLFAGADRKQSIPNVPRKNQTCKKIPVKETTSIKISKPVNGKKMINDFVKEQKISQGS YGKVVCKYHTRFWPG" gene 24265466..24284466 /locus_tag="TCM_045396" /note="dbxref CacaoGD:Thecc1EG045396" mRNA join(24265466..24265533,24280775..24280849, 24280934..24280978,24281573..24281647,24281828..24281915, 24282061..24282185,24283073..24283168,24283454..24283520, 24283700..24283815,24283898..24283976,24284066..24284352) /locus_tag="TCM_045396" /product="Geminivirus rep interacting kinase 1 isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041043t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s21580.5" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc389t20_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc558t10; inference alignment:Newbler:10:TSA:cgbaP2_g11136t00001" gene complement(24265923..24274304) /locus_tag="TCM_045393" /note="dbxref CacaoGD:Thecc1EG045393" mRNA complement(join(24265923..24265951,24267757..24268751, 24269011..24269139,24269272..24269853,24269967..24270070, 24273703..24273774)) /locus_tag="TCM_045393" /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT2G21840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026153t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc642t3; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8016t8" CDS complement(join(24265930..24265951,24267757..24268751, 24269011..24269139,24269272..24269853,24269967..24270014)) /locus_tag="TCM_045393" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG026153t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 3" /protein_id="EOY19991.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MIYYLKRSGRDLKTARCYGCVKCKFFLHELCRDKVQRTLYHPFH PSHPLRLHSIFGSRCNACGKYFYGTEDYGTANYCCLICSFFLHFHCAKLLPTLRAKCH DHPLTYFNIMRYEWRSRFRCHVCKGFCDDNFYRCVQCDFSVHLFCVPIPSSIKHRYHR HPLTHMDKINEDDSGEYYCDVCENERNPMDHVYCCEECTFTAHADCVLNEDKISSEKD VSSSVPQSIYSNTLLVDEMEHNEVIDAIHTPRQLLNKFIFHEHSMRFYEVTEKLKENQ YCEACRMVISGPYYMCETCTDDTFLLQIPKTRYYLHEKCATLPLEIQFPFHSSHRLGL YNSHFPNIICDECREVCFGFFYSCNECDFKLDVKCAALTAHKTGVSQLKEMEKVVELH HFTHPHKLVFVNFIDPSWTANCLVCGARSFGLVYVCPNSNCTYRAHKSCLELPQKIQV PFHLEHMLTFFRPEKLYDCYACHLSMHFYIYSCEQCGLKLHPSCANSLRRPLNCVSHV HNLYYFGTNFQLHFGTYSHFCRVCEKDCTGAFYRCLECAINFHLDCVPIPRIVHSKRH VHHLSMKDSFLEDDSGEFYCTESTD" mRNA complement(join(24266827..24266930,24267278..24267351, 24267654..24268751,24269011..24269139,24269272..24269881, 24269995..24270070,24273703..24273774)) /locus_tag="TCM_045393" /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT2G21840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026164t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8016t8; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8016t8" mRNA complement(join(24267037..24267351,24267654..24268467, 24268588..24268751,24269011..24269139,24269272..24270070, 24272583..24272667,24273703..24273772,24274259..24274304)) /locus_tag="TCM_045393" /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT2G21840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026164t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8016t8" CDS complement(join(24267313..24267351,24267654..24268467, 24268588..24268751,24269011..24269139,24269272..24270070, 24272583..24272667,24273703..24273739)) /locus_tag="TCM_045393" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026164t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 1" /protein_id="EOY19989.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MKNPGQEDFLQDVSMPCAAAGCGMLALIYRIIKENSRNFRLYSC DECNFNLDLACASSTNDLLLEEKWQRLKDGKKKEIQHYCHLHKLAIFKYRKIGADDYN CSWCGKRLSEVCYGCVKCKFFLHELCRDKVQRTLYHPFHPSHPLRLHSIFGSRCNACG KYFYGTEDYGTANYCCLICSFFLHFHCAKLLPTLRAKCHDHPLTYFNIMRYEWRSRFR CHVCKGFCDDNFYRCVQCDFSVHLFCVPIPSSIKHRYHRHPLTHMDKINEDDSGEYYC DVCENERNPMDHVYCCEECTFTAHADCVLNEDKISSEKDVSSSVPQSIYSNTLLVDEM EHNEVIDAIHTPRQLLNKFIFHEHSMRFYEVTEKLKENQYCEACRMVISGPYYMCETC TDDTFLLQIPKTREVCFGFFYSCNECDFKLDVKCAALTAHKTGVSQLKEMEKVVELHH FTHPHKLVFVNFIDPSWTANCLVCGARSFGLVYVCPNSNCTYRAHKSCLELPQKIQVP FHLEHMLTFFRPEKLYDCYACHLSMHFYIYSCEQCGLKLHPSCANSLRRPLNCVSHVH NLYYFGTNFQLHFGTYSHFCRVCEKDCTGAFYRCLECAINFHLDCVPIPRIVHSKRHV HHLSMKDSFLEDDSGEFYCDICEKERCPNDHVYYCEECNGLLAVHVECVLTKVEDYTT VLMQSQ" CDS complement(join(24267313..24267351,24267654..24268751, 24269011..24269139,24269272..24269881,24269995..24270014)) /locus_tag="TCM_045393" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026164t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 2" /protein_id="EOY19990.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MIYYLKSWCGKRLSEVCYGCVKCKFFLHELCRDKVQRTLYHPFH PSHPLRLHSIFGSRCNACGKYFYGTEDYGTANYCCLICSFFLHFHCAKLLPTLRAKCH DHPLTYFNIMRYEWRSRFRCHVCKGFCDDNFYRCVQCDFSVHLFCVPIPSSIKHRYHR HPLTHMDKINEDDSGEYYCDVCENERNPMDHVYCCEECTFTAHADCVLNEDKISSEKD VSSSVPQSIYSNTLLVDEMEHNEVIDAIHTPRQLLNKFIFHEHSMRFYEVTEKLKENQ YCEACRMVISGPYYMCETCTDDTFLLQIPKTRYYLHEKCATLPLEIQFPFHSSHRLGL YNSHFPNIICDECREVCFGFFYSCNECDFKLDVKCAALTAHKTGVSQLKEMEKVVELH HFTHPHKLVFVNFIDPSWTANCLVCGARSFGLVYVCPNSNCTYRAHKSCLELPQKIQV PFHLEHMLTFFRPEKLYDCYACHLSMHFYIYSCEQCGLKLHPSCANSLRRPLNCVSHV HNLYYFGTNFQLHFGTYSHFCRVCEKDCTGAFYRCLECAINFHLDCVPIPRIVHSKRH VHHLSMKDSFLEDDSGEFYCDICEKERCPNDHVYYCEECNGLLAVHVECVLTKVEDYT TVLMQSQ" gene complement(24269471..24280365) /locus_tag="TCM_045394" /note="dbxref CacaoGD:Thecc1EG045394" mRNA complement(join(24269471..24270070,24273703..24273772, 24274259..24274483,24276070..24276445,24276529..24276687, 24276772..24276965,24277101..24277293,24277571..24278544, 24278621..24278844)) /locus_tag="TCM_045394" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G06700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024941t1" /inference="similar to AA sequence:ricco:28691.m000034" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6820t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6820t4" mobile_element 24270741..24270970 /note="source:scaffold_4_CACTA_0506 6880 7095" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24271961..24272152 /note="source:scaffold_2_CACTA_0282 5291 5507" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24273156..24273250) /note="source:scaffold_7_CACTA_0795 2959 3048" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24273216..24273340 /note="source:scaffold_8_CACTA_0863 5119 5226" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(24274460..24274483,24276070..24276445, 24276529..24276687,24276772..24276965,24277101..24277293, 24277571..24278544,24278621..24278833,24280342..24280365)) /locus_tag="TCM_045394" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G06700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024941t1" /inference="similar to AA sequence:ricco:28691.m000034" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc69t12; alternateUTRof:Thecc1EG045394t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6820t4" CDS complement(join(24276070..24276445,24276529..24276687, 24276772..24276965,24277101..24277293,24277571..24278457)) /locus_tag="TCM_045394" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28691.m000034; paralog of Thecc1EG024941t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19992.1" /db_xref="TAIR:AT5G06700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T867" /translation="MADAKYPSSTKTETKRTTFSLFATRKTVTFAFTFTSVFVVGFTT LLLLNPSSYSSPWLKTFLQTSSYRSHFSSLFSHFLPNSSQSNYYPLPASQLRDNPIQI SQENERFRGKKDWSLSSENNSGGPFQISPESEDFGGNDESFSSEVNSGGSKIPFEGNA FNTHTVTFSQEPNHTSQSFNANATNSPGSSSQTLDIIESGKELKEGILEKGRVSSNVT LDGSSDEFLEKLRKGNFVDIMSHCRIFDGKWVRDDSYPLYAPGSCPHIDESFNCFLNG RPDRGYEKYRWQPSGCNMPRLNGKHMLELLRGKRVVFVGDSLGRNMWESLVCVLQNSA EEKSNVFEDSDRHELQTEGSYSILFNDYNCSIEYFRSPFLVQEWKSLEKNGSKRETLR LDMMDKLSYKYKKADVLIFNTGHWWTHEKTSKGKGYYQEGTTIYDRLNVKEAFRKALT TWARWIDTNIDPMKTLVFFRGFSASHFRGGRWNSGGQCDGETEPITNEKYLKKYPSKM RIFESVIKGMNKPVLYLNVSRMTGFRKDAHPSIYRKQNLTEEERSSPTRIQDCSHWCL PGVPDTWNELVYAQLFVKHNQHQEQLLHQELQQRRA" CDS complement(join(24276070..24276445,24276529..24276687, 24276772..24276965,24277101..24277293,24277571..24278457)) /locus_tag="TCM_045394" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28691.m000034; paralog of Thecc1EG024941t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19993.1" /db_xref="TAIR:AT5G06700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T867" /translation="MADAKYPSSTKTETKRTTFSLFATRKTVTFAFTFTSVFVVGFTT LLLLNPSSYSSPWLKTFLQTSSYRSHFSSLFSHFLPNSSQSNYYPLPASQLRDNPIQI SQENERFRGKKDWSLSSENNSGGPFQISPESEDFGGNDESFSSEVNSGGSKIPFEGNA FNTHTVTFSQEPNHTSQSFNANATNSPGSSSQTLDIIESGKELKEGILEKGRVSSNVT LDGSSDEFLEKLRKGNFVDIMSHCRIFDGKWVRDDSYPLYAPGSCPHIDESFNCFLNG RPDRGYEKYRWQPSGCNMPRLNGKHMLELLRGKRVVFVGDSLGRNMWESLVCVLQNSA EEKSNVFEDSDRHELQTEGSYSILFNDYNCSIEYFRSPFLVQEWKSLEKNGSKRETLR LDMMDKLSYKYKKADVLIFNTGHWWTHEKTSKGKGYYQEGTTIYDRLNVKEAFRKALT TWARWIDTNIDPMKTLVFFRGFSASHFRGGRWNSGGQCDGETEPITNEKYLKKYPSKM RIFESVIKGMNKPVLYLNVSRMTGFRKDAHPSIYRKQNLTEEERSSPTRIQDCSHWCL PGVPDTWNELVYAQLFVKHNQHQEQLLHQELQQRRA" mRNA join(24278894..24279115,24280025..24280062, 24280342..24280514,24280775..24280849,24280934..24280978, 24281573..24281647,24281828..24281915,24282061..24282185, 24283073..24283168,24283454..24283520,24283700..24283815, 24283898..24283976,24284066..24284466) /locus_tag="TCM_045396" /product="Geminivirus rep interacting kinase 1 isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041043t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s21580.5" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11136t00001" CDS join(24280041..24280062,24280342..24280514, 24280775..24280849,24280934..24280978,24281573..24281647, 24281828..24281915,24282061..24282185,24283073..24283168, 24283454..24283520,24283700..24283815,24283898..24283976, 24284066..24284175) /locus_tag="TCM_045396" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041043t1" /codon_start=1 /product="Geminivirus rep interacting kinase 1 isoform 1" /protein_id="EOY19987.1" /db_xref="Phytozome:POPTR_0003s21580.5" /db_xref="TAIR:AT3G45240.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AIM3" /translation="MKHIESGDMDNGVQRNAEDISNEQVWSRSLFAGRDRKQPITNMP RKNQTCKKIPVTETTSIKISKHVNGKKMINDFVKEQKISHGSYGKVVLYRNKNDGTPY AIKKICKSRLCKVRVTLSETAMTNVFREVSIMKMLDHPNIVNLVEVIDDPKSDYLYMV LEYVEGNGIRNLSEIQGHLDETTARGYFKDIIAGLTYLHSHNIIHGDIKPENLLLTRS GRVKIGDFSVSQAFEDDNDELWRCPGTPAFTPPECCFGTVYHGKAADIWATGVTLHYM VVGCYPFLADSLPETYNNIVNSPLLLPKELDPMLKDLLQDLFCKDPKLRITLDIVAEH PWVVKEGAMVLPRCPCCCRLGV" CDS join(24280793..24280849,24280934..24280978, 24281573..24281647,24281828..24281915,24282061..24282185, 24283073..24283168,24283454..24283520,24283700..24283815, 24283898..24283976,24284066..24284175) /locus_tag="TCM_045396" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041043t1" /codon_start=1 /product="Geminivirus rep interacting kinase 1 isoform 2" /protein_id="EOY19988.1" /db_xref="Phytozome:POPTR_0003s21580.5" /db_xref="TAIR:AT3G45240.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AIM3" /translation="MINDFVKEQKISHGSYGKVVLYRNKNDGTPYAIKKICKSRLCKV RVTLSETAMTNVFREVSIMKMLDHPNIVNLVEVIDDPKSDYLYMVLEYVEGNGIRNLS EIQGHLDETTARGYFKDIIAGLTYLHSHNIIHGDIKPENLLLTRSGRVKIGDFSVSQA FEDDNDELWRCPGTPAFTPPECCFGTVYHGKAADIWATGVTLHYMVVGCYPFLADSLP ETYNNIVNSPLLLPKELDPMLKDLLQDLFCKDPKLRITLDIVAEHPWVVKEGAMVLPR CPCCCRLGV" gene 24285117..24287155 /locus_tag="TCM_045397" /note="dbxref CacaoGD:Thecc1EG045397" mRNA join(24285117..24285487,24285616..24285806, 24286591..24287141) /locus_tag="TCM_045397" /product="Translation elongation factor EF1B/ribosomal protein S6 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s12120.1" /inference="similar to AA sequence:ricco:29737.m001255" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6601t1" mRNA join(24285348..24285487,24285657..24285806, 24286591..24287155) /locus_tag="TCM_045397" /product="Translation elongation factor EF1B/ribosomal protein S6 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s12120.1" /inference="similar to AA sequence:Phytozome:GSVIVT01001041001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02583t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6601t1" CDS join(24285624..24285806,24286591..24286890) /locus_tag="TCM_045397" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29737.m001255" /codon_start=1 /product="Translation elongation factor EF1B/ribosomal protein S6 family protein isoform 1" /protein_id="EOY19994.1" /db_xref="TAIR:AT3G18760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SC18" /translation="MPLYDCVLLFKPHVQKELSMDLIRRVGKHVCSRNGVLTEMKSFG TVQLGYGIRKLDGRYYQGQLMQMTMMATPNFNKELHYLNKEDRLLRWLLVKHRDTKHG LEFLSEEDGNLELSKLPRGNIFNDVDEEEDDDEDEDEDDDDDDDDDEYDENQENSGEH " CDS join(24285681..24285806,24286591..24286890) /locus_tag="TCM_045397" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Translation elongation factor EF1B/ribosomal protein S6 family protein isoform 2" /protein_id="EOY19995.1" /db_xref="Phytozome:GSVIVT01001041001" /db_xref="TAIR:AT3G18760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SC18" /translation="MDLIRRVGKHVCSRNGVLTEMKSFGTVQLGYGIRKLDGRYYQGQ LMQMTMMATPNFNKELHYLNKEDRLLRWLLVKHRDTKHGLEFLSEEDGNLELSKLPRG NIFNDVDEEEDDDEDEDEDDDDDDDDDEYDENQENSGEH" gene complement(24288417..24288852) /locus_tag="TCM_045398" /note="dbxref CacaoGD:Thecc1EG045398" mRNA complement(24288417..24288852) /locus_tag="TCM_045398" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0650s00210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040311t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4799t1" CDS complement(24288522..24288800) /locus_tag="TCM_045398" /note="paralog of Thecc1EG040311t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY19996.1" /translation="MEVEMSLADSLMKVLMFLIVQGLVYLILSKSSDIFSKNKMRSLS FKRARSLSIRRILASISDLPQGVEPSPPSRSLRSPAQEYPTIEEYESY" gene 24293384..24304157 /locus_tag="TCM_045399" /note="dbxref CacaoGD:Thecc1EG045399" mRNA join(24293384..24293505,24294740..24295113, 24295649..24296035,24296495..24296958) /locus_tag="TCM_045399" /product="Seven in absentia of 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025381001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024949t3" /inference="similar to AA sequence:Phytozome:GSVIVT01025381001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08402t00001; inference alignment:Newbler:10:TSA:cgbaB_g08402t00001" mRNA join(24293849..24294492,24294740..24295113, 24295649..24296035,24296495..24297106,24304104..24304157) /locus_tag="TCM_045399" /product="Seven in absentia of 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025381001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024949t3" /inference="similar to AA sequence:Phytozome:GSVIVT01025381001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b043786t1a2; alternateUTRof:Thecc1EG045399t1; inference alignment:Newbler:10:TSA:cgbaB_g08402t00001" CDS join(24294895..24295113,24295649..24296035, 24296495..24296815) /locus_tag="TCM_045399" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG024949t3" /codon_start=1 /product="Seven in absentia of 2 isoform 1" /protein_id="EOY19997.1" /db_xref="Phytozome:GSVIVT01025381001" /db_xref="TAIR:AT3G58040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PB73" /translation="MAPGGGICKDVIESRVAFADYDMATSSMELRGSPLRKAATGLGG NLGATSTNDVHELLECPVCVNLMYPPIYQCPNGHTVCSICKARVHNSCPTCRNELGNI RCLALEKVAESLELPCRYQTLGCHDIFPYYSKLKHEKNCRYRPYNCPYAGAECSVTGN ISFLVMHLKNDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAF HIGMAPVYMAFLRFMGDEDEARQFSYSLEVGGNGRKFIWQGVPRSIRDSHRKVRDSQD GLIIQRNLALFFSGGDRQELKLKVAGRIWKEQ" CDS join(24294895..24295113,24295649..24296035, 24296495..24296815) /locus_tag="TCM_045399" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG024949t3" /codon_start=1 /product="Seven in absentia of 2 isoform 1" /protein_id="EOY19998.1" /db_xref="Phytozome:GSVIVT01025381001" /db_xref="TAIR:AT3G58040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PB73" /translation="MAPGGGICKDVIESRVAFADYDMATSSMELRGSPLRKAATGLGG NLGATSTNDVHELLECPVCVNLMYPPIYQCPNGHTVCSICKARVHNSCPTCRNELGNI RCLALEKVAESLELPCRYQTLGCHDIFPYYSKLKHEKNCRYRPYNCPYAGAECSVTGN ISFLVMHLKNDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAF HIGMAPVYMAFLRFMGDEDEARQFSYSLEVGGNGRKFIWQGVPRSIRDSHRKVRDSQD GLIIQRNLALFFSGGDRQELKLKVAGRIWKEQ" gene complement(24297946..24304901) /locus_tag="TCM_045401" /note="dbxref CacaoGD:Thecc1EG045401" mRNA complement(join(24297946..24298249,24298385..24298451, 24298544..24298621)) /locus_tag="TCM_045401" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6569t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6569t1" mRNA complement(join(24297946..24298249,24298385..24298454, 24298544..24298614)) /locus_tag="TCM_045401" /product="Uncharacterized protein isoform 1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6569t2; alternateUTRof:Thecc1EG045401t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6569t1" mRNA complement(join(24297951..24298249,24304879..24304901)) /locus_tag="TCM_045401" /product="Uncharacterized protein isoform 1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc22239t1; alternateUTRof:Thecc1EG045401t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6569t1" CDS complement(24297959..24298183) /locus_tag="TCM_045401" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY19999.1" /translation="MHKGNCMICSHLLAFNGVRKEHAKIMSISLTNLCNEGDYYEQVH VVTLSSMEDIYYILGVLKILSNLRILEVIE" CDS complement(24297959..24298183) /locus_tag="TCM_045401" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20000.1" /translation="MHKGNCMICSHLLAFNGVRKEHAKIMSISLTNLCNEGDYYEQVH VVTLSSMEDIYYILGVLKILSNLRILEVIE" CDS complement(24297959..24298183) /locus_tag="TCM_045401" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20001.1" /translation="MHKGNCMICSHLLAFNGVRKEHAKIMSISLTNLCNEGDYYEQVH VVTLSSMEDIYYILGVLKILSNLRILEVIE" mobile_element complement(24300203..24300429) /note="source:scaffold_1_CACTA_0016 1412 1640" /mobile_element_type="transposon:TIR/CACTA" gene complement(24304492..24305170) /locus_tag="TCM_045402" /note="dbxref CacaoGD:Thecc1EG045402" mRNA complement(join(24304492..24304786,24304879..24304945, 24305027..24305170)) /locus_tag="TCM_045402" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6572t1" CDS complement(join(24304720..24304786,24304879..24304945, 24305027..24305099)) /locus_tag="TCM_045402" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20002.1" /translation="MAEWDAVCQKEHKSQEDKPGYNSSGERKTKCCPRTTKKGEGGFM NMFWRALGCCGLLSACYEPKTSQP" gene complement(24305229..24309549) /locus_tag="TCM_045403" /note="dbxref CacaoGD:Thecc1EG045403" mRNA complement(join(24305229..24306280,24306357..24306530, 24307452..24307485,24308154..24308232,24309176..24309549)) /locus_tag="TCM_045403" /product="BTB/POZ domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT4G04090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045405t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s08150.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:PASA:2:TSA:puevd3b043789t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g00361t00001" mRNA complement(join(24305229..24306280,24306357..24306530, 24306952..24307068,24307452..24307485,24308154..24308232, 24308877..24308921,24309176..24309549)) /locus_tag="TCM_045403" /product="BTB/POZ domain-containing-like protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G04090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045405t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s08150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00361t00001" mRNA complement(join(24305429..24306280,24306357..24306530, 24307452..24307485,24308154..24308232,24308877..24309203)) /locus_tag="TCM_045403" /product="BTB/POZ domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G04090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045405t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s08150.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7631t4; inference alignment:Newbler:10:TSA:cgbaP1_g00361t00001" mRNA complement(join(24305608..24306280,24307452..24307485, 24308154..24308232,24309176..24309388)) /locus_tag="TCM_045403" /product="BTB/POZ domain-containing protein, putative isoform 4" /inference="alignment:exonerate- protein:2:TAIR:AT4G04090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045405t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s08150.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01352t00002; inference alignment:Newbler:10:TSA:cgbaP1_g00361t00001" CDS complement(join(24305831..24306280,24307452..24307485, 24308154..24308232,24309176..24309344)) /locus_tag="TCM_045403" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG045405t2" /codon_start=1 /product="BTB/POZ domain-containing protein, putative isoform 4" /protein_id="EOY20006.1" /db_xref="Phytozome:POPTR_0013s08150.1" /db_xref="TAIR:AT3G56230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYL9" /translation="MSGFHFERPSSIPFGVFSSNGTTSASGFSSPFGSFASPPANTGP STFGFSPVGVNSGNHASSNAASATSTFGAATARRSPSGRTNSTAPTSKNEAARSEIFK NMLDSDGCKAPPSDTDTITLSELNNEELESLLEFLYTGNLPLDKLEKHVYSLYVAADK YEIPYLQESCESYMLNSLNASNAIDILEIADAQSNKTLKETTLNFIIRNMKDIVSTTK YEVFASSNPALCMQITRAFVDAKSN" CDS complement(join(24305831..24306280,24306357..24306530, 24307452..24307485,24308154..24308232,24309176..24309344)) /locus_tag="TCM_045403" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG045405t1" /codon_start=1 /product="BTB/POZ domain-containing protein, putative isoform 3" /protein_id="EOY20005.1" /db_xref="Phytozome:POPTR_0013s08150.1" /db_xref="TAIR:AT3G56230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYL9" /translation="MSGFHFERPSSIPFGVFSSNGTTSASGFSSPFGSFASPPANTGP STFGFSPVGVNSGNHASSNAASATSTFGAATARRSPSGRTNSTAPTSKNEPHANVNKA MSGLKDTEDDLKKKISFLSGFVVAFKEQTHTDILLKPNNGPCIPAHKALLAARSEIFK NMLDSDGCKAPPSDTDTITLSELNNEELESLLEFLYTGNLPLDKLEKHVYSLYVAADK YEIPYLQESCESYMLNSLNASNAIDILEIADAQSNKTLKETTLNFIIRNMKDIVSTTK YEVFASSNPALCMQITRAFVDAKSN" CDS complement(join(24305831..24306280,24306357..24306530, 24306952..24307068,24307452..24307485,24308154..24308232, 24308877..24308921,24309176..24309344)) /locus_tag="TCM_045403" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG045405t1" /codon_start=1 /product="BTB/POZ domain-containing-like protein isoform 1" /protein_id="EOY20003.1" /db_xref="Phytozome:POPTR_0013s08150.1" /db_xref="TAIR:AT3G56230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYL9" /translation="MSGFHFERPSSIPFGVFSSNGTTSASGFSSPFGSFASPPANTGP STFGFSPVGVNSGNHASSGSSLFGASTGNHASSNAASATSTFGAATARRSPSGRTNST APTSKNEVFDSLVKSSLVRLEFKVFWACFWVRIHFSTSIKQFTVDEPHANVNKAMSGL KDTEDDLKKKISFLSGFVVAFKEQTHTDILLKPNNGPCIPAHKALLAARSEIFKNMLD SDGCKAPPSDTDTITLSELNNEELESLLEFLYTGNLPLDKLEKHVYSLYVAADKYEIP YLQESCESYMLNSLNASNAIDILEIADAQSNKTLKETTLNFIIRNMKDIVSTTKYEVF ASSNPALCMQITRAFVDAKSN" CDS complement(join(24305831..24306280,24306357..24306530, 24307452..24307485,24308154..24308232,24308877..24308949)) /locus_tag="TCM_045403" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG045405t1" /codon_start=1 /product="BTB/POZ domain-containing protein, putative isoform 2" /protein_id="EOY20004.1" /db_xref="Phytozome:POPTR_0013s08150.1" /db_xref="TAIR:AT3G56230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYL9" /translation="MLLSLVCVVGNHASSGSSLFGASTGNHASSNAASATSTFGAATA RRSPSGRTNSTAPTSKNEPHANVNKAMSGLKDTEDDLKKKISFLSGFVVAFKEQTHTD ILLKPNNGPCIPAHKALLAARSEIFKNMLDSDGCKAPPSDTDTITLSELNNEELESLL EFLYTGNLPLDKLEKHVYSLYVAADKYEIPYLQESCESYMLNSLNASNAIDILEIADA QSNKTLKETTLNFIIRNMKDIVSTTKYEVFASSNPALCMQITRAFVDAKSN" gene complement(24310764..24313704) /locus_tag="TCM_045405" /note="dbxref CacaoGD:Thecc1EG045405" mRNA complement(join(24310764..24311484,24311571..24311753, 24312792..24313011,24313122..24313704)) /locus_tag="TCM_045405" /product="BTB/POZ domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400048624" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045403t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s08150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6576t1" mRNA complement(join(24310930..24311484,24311571..24311747, 24312792..24313011,24313122..24313143)) /locus_tag="TCM_045405" /product="BTB/POZ domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400048624" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045403t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s08150.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6576t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6576t1" mRNA complement(join(24310993..24311484,24311571..24311747, 24312792..24313016,24313122..24313219)) /locus_tag="TCM_045405" /product="BTB/POZ domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400048624" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045403t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s08150.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13580t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6576t1" CDS complement(join(24311023..24311484,24311571..24311753, 24312792..24313011,24313122..24313150)) /locus_tag="TCM_045405" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG045403t2" /codon_start=1 /product="BTB/POZ domain-containing protein, putative isoform 1" /protein_id="EOY20007.1" /db_xref="Phytozome:POPTR_0013s08150.1" /db_xref="TAIR:AT3G56230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYL9" /translation="MQAIIMNRISFCRKSRKSRQEMDCSICSSMPFILRPPRNTICGA CYEGARNVITLMNKLDQNDGKGSDKASNVPVSSSQNSCKPQPLANLTKWIASMKDIED DLNKKISFLSGLVVAFRDQIHTDIQLKPGNHGPCIPAHRALLAARSEIFRNMLDSDGC KAPPSDTITLPELNTEELESLLEFLYSGNLPFDKLEKHVYSLFVAADKYEIPYLQEFC ERFLLSSLNASNVLEILEISDVCSNKTLKETALNFIVRNMEDVVFSAKYEVFAPKNPH LGVQITRAFLMDSKSKRINGV" CDS complement(join(24311023..24311484,24311571..24311747, 24312792..24313011,24313122..24313135)) /locus_tag="TCM_045405" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG045403t2" /codon_start=1 /product="BTB/POZ domain-containing protein, putative isoform 2" /protein_id="EOY20008.1" /db_xref="Phytozome:POPTR_0013s08150.1" /db_xref="TAIR:AT3G56230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYL9" /translation="MNRISFCRKSRKSRQEMDCSICSSMPFILRPPRNTICGACYEGA RNVITLMNKLDQNDGKGSDKASNVPVSSSQNSCKPLANLTKWIASMKDIEDDLNKKIS FLSGLVVAFRDQIHTDIQLKPGNHGPCIPAHRALLAARSEIFRNMLDSDGCKAPPSDT ITLPELNTEELESLLEFLYSGNLPFDKLEKHVYSLFVAADKYEIPYLQEFCERFLLSS LNASNVLEILEISDVCSNKTLKETALNFIVRNMEDVVFSAKYEVFAPKNPHLGVQITR AFLMDSKSKRINGV" CDS complement(join(24311023..24311484,24311571..24311747, 24312792..24312977)) /locus_tag="TCM_045405" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG045403t2" /codon_start=1 /product="BTB/POZ domain-containing protein, putative isoform 3" /protein_id="EOY20009.1" /db_xref="Phytozome:POPTR_0013s08150.1" /db_xref="TAIR:AT3G56230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYL9" /translation="MDCSICSSMPFILRPPRNTICGACYEGARNVITLMNKLDQNDGK GSDKASNVPVSSSQNSCKPLANLTKWIASMKDIEDDLNKKISFLSGLVVAFRDQIHTD IQLKPGNHGPCIPAHRALLAARSEIFRNMLDSDGCKAPPSDTITLPELNTEELESLLE FLYSGNLPFDKLEKHVYSLFVAADKYEIPYLQEFCERFLLSSLNASNVLEILEISDVC SNKTLKETALNFIVRNMEDVVFSAKYEVFAPKNPHLGVQITRAFLMDSKSKRINGV" gene complement(24313805..24319629) /locus_tag="TCM_045406" /note="dbxref CacaoGD:Thecc1EG045406" mRNA complement(join(24313805..24314195,24314533..24314585, 24314696..24319629)) /locus_tag="TCM_045406" /product="TIR-NBS-LRR type disease resistance-like protein" /inference="similar to AA sequence:ricco:29990.m000507" /note="quality class is strong, express is weak, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1796t2" CDS complement(join(24314574..24314585,24314696..24319504)) /locus_tag="TCM_045406" /note="dbxref ricco:29990.m000507" /codon_start=1 /product="TIR-NBS-LRR type disease resistance-like protein" /protein_id="EOY20010.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q19PJ3" /translation="MVALRFDGLPGSIALLLDKIHSVLPLAAIIEDTTFASLLKRLKS SLASISDVIHDVVGPRRNSHGMYDWLHQLLYAVFNAEDFVDDILFEVARLKVEAKARN LESLKLRDVRASIKNLVLSQDRRPRWNIRNLVETTDAIAKAMNEYGIRKREAHDELQL SDSLPAISLLDEAAIYGREEDRINILRFLLQGDENLDGIALVDEGGLGKTTLAQLVYN DEKVSAHFELKAWVAVPMAFDLYKITRTILEATTLCSIEDLMSLELLDKLSASLDGKR FLLVLDDVQYLNNNVWYALRTSLNSGARGSKIIVTTPKEEVAFVMGCSTLYHLNPLTE DFCWSLLAKSAYAGRDRSEVITLEDIGRKIMESCRGIPLCVNVIGGLLRFKKTREEWC HVLEDLQKANNHDSISSILLLSYYHLPALLKRCFAYCSLFPRDHEFDKEELVLLWMAE GFLQKSSGPSMEMVGAECVDGLLKRSFFIPVDNSHFKIHHYMHDLAKAVSRGVCLRWE PYTIIRSAVAKRIRHLSLLCHYQLRVILEMKSLRTFYLIDCRSCQLSPTALEAIFPGL QRLRVLSLPHFQHAELPPSIGKLKYLHYLDVSHSALTSLPEYLCILYFLQTLILTNCY SLLMLPQGIVKLVNLRKLSIKGAGLKQMPEKMSRLTSLQSLTNFIVGHGGSSIKELGA LPYLHGSLSVSGLQNVSSPSDASAANLKAMRYLDDLELEWSCNNEDPATDQKKVLEKL KPSVELKKLSIRFYGGKEFPRWLGDSSFSKIISLHLSDCINCKSLPPLGRLSSLEHLI IERIGRIKSIGHEFYGVDVAGCKPFQSLKTLKFVEMSQWEEWILLEVDGQEFPWLEEF CVINCSLLKRDLPKSLPTLVKLEICNCEQLEASLPQTSECCVPKLDNCDKVEKISNDN QTAPSSSEDRNQQFSSPSSSNKKLREPLDLRGSLSKSKFQDVSSASDASEANLKAMPY LDELESEKTTQDKTLSKIDGEIASEFSSRMTKVPGNELQLEWSRNNENLAKERAVRWS EVSALSTIRFLCISDYNNCSSLPPFGQLPFLENFIIQRIGGVRSIGPEFCRIDLTCRK PFQSLKTLKFGEMSQWEEWTLLEVDGEEFPCLEEFYLINCPLLKGDIPKRLPTLVKLE ICECEQLEASLPQTSERCILKLDNCYKVQKKTQDKTLSKSDGEIASQFSSSMTEIPDN ELQLEESRNNKNPAKEKAVQEYPEPSRKLEEPSKSDGEITPEFSPSLIHQEQDHNQPT PSPSEDGNQQLMELPTDLHSLRIEGYASDKLPKEILGRSSLQHLYIIDCISLQSFPQS PSLKTLYVHNCQKLKFPQPNKVMNQDVGLEDLCLGSSCDSLKIFALNYFPKLKSLSLW DCRNLEHLSIEKGLQNELTSLDSLEIKDCPKLRSFLEEEFQAPNLTSLVFFNCGSLKS LPGMQSIKSLQSLYINKCPALESFPVEGLPSSLIILCISFCDKITPQKGWKLENLHSL SHFEIEGGCHELESFPEEGLLPTNLNSLRISRLADLKFLDREGLQKLTSLQTLEINCC DKLDSLPEHGLPSSLYSLSITDCSLLNPKLQNRKGREWFKIARVPSIHLDEVSD" mobile_element 24320212..24320460 /note="source:CACAO_M_E70014_F74_scaffold_10 628 882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24321698..24322407 /note="source:INTACT52F_F339_scaffold_1-int 1551 2272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24322812..24326622) /note="source:INTACT803_F10_scaffold_6-int 3 3725" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(24322903..24332818) /locus_tag="TCM_045408" /note="dbxref CacaoGD:Thecc1EG045408" mRNA complement(join(24322903..24323161,24328904..24331713, 24331843..24332818)) /locus_tag="TCM_045408" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g37140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045420t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013307001" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS complement(join(24329364..24331713,24331843..24332492)) /locus_tag="TCM_045408" /note="paralog of Thecc1EG045420t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY20011.1" /db_xref="Phytozome:GSVIVT01013307001" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AHR9" /translation="MVTEAVVLAVGGAFLSSTLNVLFDRLATVQALKPMISLFRGTKL RDDLLQKMEILLLTVEKVFGDAEEKQILNPSVKKWVDKLKDAAYDAEDLLDAMAIEDQ VQEEQVKDFNTRLDKIVLKLQLIAEEKDILNLKEDQGGKSIPRLPTTSLVDESEVCLR NNDKKHILDILLSDGLNGQKIPVITIVGMGGIGKTTLAQFLYNDDRVKNYFNLRAWVK FLLVLDNVWNESYRTWDLLLRPLQVGVPGSKIIVTTRSQTVSSTMRNALVHDLKRLSK GDCWALFSKHAFGNKNPNEDSTLKGIGEKIVEKCRGLPLAIKTLGSLLHSQVEAQEWD NVLNSRIWDLPAHKSDILPALRLSYHYLPSHLKRCFAYCSLFPKGHKFERRDLDRMWI AEGLVQQPNSRRRTEEVGEQYFHELLSRSIFQQSHDESRFIMHDLVNDLAQYTAGEFC FRFENGSPPQNPARVRHLSCILKPSDKPYKFEAFYGKNKFLRTFLPLRSPGDGKTPFD SGVFNKLFPAPSCLRVLSLSSYNITKFPDSVCNVKQLRYLDLSGAALRCLPERVGCLH NLETLKLSGCHRLTLLPANLWNLTKLEHLDISGTPILELLDSIGNLKELGYLDLSGTK IQFLPEGVCSLYNLQTLNLSRCPHLTCLPTYMENLTKLKHLDIKGTPILQMPPKLGNL KRLLLLTNFVVGDNSGSTVSALKDLRLHGTLSILQLQNVSQTADAEKANLKDKKYLRE LILEWDGDPRDGNAQIAAYNPHNGSIENVAKDPHDNDNAQNAVDDPPNGNAQSAADDP HCRDAEIAALSPHNGTTQNPMDNPQNRNGQSGGDDPQNRSAKHVANVLDKLMPGENLE RLEIRNYFGMSLPKWLGNASFSKMKSLTLDNCQKCNSLPPLGQLPSLKELTIHHLAGV KIVGFEFYGSGVVAFISLEILLFERMENWEQWLPFTNERGFPSLRKLLMIGCRKLTGN LPVQLPTSAMQIDDCDRLNVCQGATKQ" mobile_element complement(24336094..24336225) /note="source:CACAO_M_E3884_F22_scaffold_1 13077 13203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24338050..24338926 /note="source:INTACT675_F28_scaffold_3-int 4400 5276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24340420..24340640 /note="source:INTACT1_F64_scaffold_3-int 444 656" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24341177..24342201 /note="source:INTACT1_F64_scaffold_3-int 1592 2572" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24342180..24342197) /note="source:CACAO_M_S_E119877_F5_scaffold_10 10035 10052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24342198..24342265 /note="source:INTACT563_F255_scaffold_10-int 6425 6491" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24342266..24352259) /note="source:CACAO_M_S_E119877_F5_scaffold_10 1 10034" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24352260..24355562 /note="source:INTACT1_F64_scaffold_3-int 2574 5935" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24355559..24355596 /note="source:CACAO_M_E49195_F17_scaffold_6 13506 13543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24355604..24356665 /note="source:CACAO_M_E52278_F17_scaffold_7 175 1222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24356665..24356721) /note="source:scaffold_5_CACTA_0610 5710 5760" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24358205..24359196) /note="source:INTACT733_F316_scaffold_2-int 4020 5012" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24359177..24362282 /note="source:CACAO_M_E44088_F76_scaffold_5 1655 4742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24362226..24362302 /note="source:CACAO_M_E11925_F316_scaffold_2 7309 7385" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(24362272..24363477) /locus_tag="TCM_045412" /note="dbxref CacaoGD:Thecc1EG045412" mRNA complement(join(24362272..24362687,24362921..24363477)) /locus_tag="TCM_045412" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045408t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013307001" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" CDS complement(join(24362306..24362687,24362921..24363456)) /locus_tag="TCM_045412" /note="paralog of Thecc1EG045408t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20012.1" /db_xref="Phytozome:GSVIVT01013307001" /translation="MLVGKQVRSGQLVVLISVASTMLPALVHDLKRLSKEDCWSLFSK HAFGNRDPNEDSTLKAIGGKIVEKCKGLPLAIQTLGSLLHSQIEAEEWDNVLNSRIWD LPDHKSDVLPALRLSYHYLPSQLKRCFAYCSIFPKGHKFEKRDLVRMWIAKSLLQQPK SKRRKKEVGEQYFNELLSRSPNDGKTHFNSQVFNKLFPVPNCLRVLSLSSYNIIEFLD SVANLKQLHYLDLSGADIGCLPERVGYLHNLETLKSSGCHRLKCLPADLRNLTKLEHL DIKGTLIRELLDSIGNLKQLGYLDLSGTQ" gene 24362994..24365283 /locus_tag="TCM_045413" /note="dbxref CacaoGD:Thecc1EG045413" mRNA join(24362994..24364085,24364206..24364774, 24364893..24365283) /locus_tag="TCM_045413" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022961001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045408t1" /note="quality class is medium, express is strong, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc13t4" CDS join(24363512..24364085,24364206..24364330) /locus_tag="TCM_045413" /note="paralog of Thecc1EG045408t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20013.1" /translation="MPPNFGNLKRLHLLTNFVVGNNIGSTISEVKDLSLLHGNLSILR LQNVSQTADAEKANLKDKKYLRELILEWDVDPRDGNAQIAARNPRNGNIENAADNPHN GHAENAEDEPLNGRAQNAVGDPSNGNVRNAANDPQNRDAEIAAGSPRINGNTQNAMDD SQNRSAEHAVNVLDKLQPAENLERLQIKNFFELAIYGMAGVKIVGPEFYGGGVIAFKS LETIWFENMENWEQ" gene complement(24365640..24366127) /locus_tag="TCM_045414" /note="dbxref CacaoGD:Thecc1EG045414" mRNA complement(join(24365640..24365852,24365956..24366127)) /locus_tag="TCM_045414" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032718001" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(join(24365795..24365852,24365956..24366062)) /locus_tag="TCM_045414" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20014.1" /translation="MGVTGTIWASAIRASLAYNTRARAPLNPSLRLIHARMHAQALTL AVLSDAAAYR" mobile_element 24366084..24366290 /note="source:scaffold_5_CACTA_0610 5126 5331" /mobile_element_type="transposon:TIR/CACTA" gene complement(24367262..24372669) /locus_tag="TCM_045415" /note="dbxref CacaoGD:Thecc1EG045415" mRNA complement(join(24367262..24368248,24368478..24372669)) /locus_tag="TCM_045415" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s01280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045419t1" /inference="similar to AA sequence:ricco:29990.m000507" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage" CDS complement(join(24368077..24368248,24368478..24372556)) /locus_tag="TCM_045415" /note="dbxref ricco:29990.m000507; paralog of Thecc1EG045419t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY20015.1" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SPM5" /translation="MAALSTSIAVLLGKLRSVLESEFADKHKKYAAYLQTLYSTLMRI SHLIRDAEEIQQDEGLRNVLQNLEDVVYDADDLADEVLYEVTRRKRESESQKLGLWAR TFNPSFGERYGKGMQSKIKQILELIDFLVMEISNFNFPKQSVSHRLHTTPVVGATEVV GRDEDRSQIIDLLLSGDADLDGIAIIGMGGCGKTTLAQLVYDDVAVRRHFDLTAWISV SFDFDVMKITRMILEAISRHIPEGCDLNLLQSRLCESLAGKRFLLVLDDVWNEDIKKW DLLRTPLKYGGWGSKILITTRNAEVADVVGCSTRYQLRLLTDQDCWHVFYKSAFAKMS EIDAKDLEDIGKEIVKKCHGVPLAAKSIGSLLLLRRSRLEWYHVLKSISLQFRQDESF FPILRLSYDHLPAHLKPCFAYCSLFPSDYEFEKEKLILLWMAAGLLAPSALGGLSMEQ VGADYFDGLLNRSFFTQVGGLYFKMHDLVHDLASFASEGVCSKLERNCPIPKGMRHLS ILTGQYDTPGKLQGTDEANRLRSFFLINSPSDHGSSQLSTYAVEDILTRQQRLRVLSL SQFQEAQFPDSIGKLKHLRYLDLSESALQSLPESLCTLYFLETLILTNCVNLIMLPRN IVKLFNLRHLHIKGTGLQQMPEEMSRLKRLQTLTNFIVGNGLNIKELGALIDLHGTLS VSKLQNISSSSDASDAKLKAKKYLNELHLEWSGSESDPVKDTAVLENLEPPTGLKKLT IRFYGGTKFPSWLGDSSFSNIVFLCLRDCNNCSSLPPLGQLPSLEHLIIERIISVSSI GHEFYRVDESISKPFQSLKTLTFEGMLRWEQWVSLQGEEFPCLQKLNLTNCPNLKGGL PKSLPSLVELRISECQQLADSLPRVPYNCELELSNCDKVRLRSKGGNLSRNDGEEASP FPLSMIEISGHVSFGIPEHSVPSKKVDDSFGFPEYSIPRDEKVDDSFLFPEHSIPSQK PDEFFGSLQYSIPSDERLDDSFLFPEHFIPSKKLDDSFSSSSSVTFKVSSITKLTELP ARLPSLKIERCDALESLPTGILDRPLLQRLYIIDCDSLKTFPQLHQPSSLKRLYIRNC RNLEFPQHNEIANQFILLEHLCLGSSCDSLGSFRLDSFPNLKTLSLWDCKKLEYLWME KGSQNDLKSLEVLEIRDCPNLTTFPEEGLEAPNLTSLVLSNCNNLKSLPQWMQNLTSL QSLHINKCKELQPLPPWRLPSSLNILCISFCDKITPQTAWELHKLHSLCNFEIEGGCQ DMLSFPEDGLLPTTLNSLRISSLLSLKSLDKNGLQQLTSLQSLEINGCNELRSFPEEG LPSSLCHLSITDCSSLNSKLEKRKGREWFKIAHIPSIHLGWQQVKQTFTLRESIAALL LNVKAHGGFERSSKSIQIVQGDCGEERKEMLGARIAEG" mobile_element complement(24373964..24374079) /note="source:INTACT112_F37_scaffold_2-int 7346 7471" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24374640..24376316) /note="source:INTACT112_F37_scaffold_2-int 5555 7245" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24376290..24377808) /note="source:INTACT112_F37_scaffold_2-int 3505 5032" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24377804..24384540) /note="source:INTACT164_F159_scaffold_7-int 899 11186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24384541..24387706) /note="source:CACAO_M_E49883_F328_scaffold_7 1 3187" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24387707..24390677) /note="source:INTACT164_F159_scaffold_7-int 1902 4623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24390894..24392541) /note="source:INTACT164_F159_scaffold_7-int 321 1671" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24392454..24404498) /locus_tag="TCM_045418" /note="dbxref CacaoGD:Thecc1EG045418" mRNA complement(join(24392454..24392492,24393254..24396665, 24403635..24404227,24404319..24404498)) /locus_tag="TCM_045418" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045420t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013307001" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage" mobile_element 24392541..24393208 /note="source:INTACT337_F59_scaffold_7-int 4026 4675" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(24393269..24396466) /locus_tag="TCM_045418" /note="paralog of Thecc1EG045420t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY20016.1" /db_xref="Phytozome:GSVIVT01013307001" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I6Q9" /translation="MPWEIVLAGVVGKALLSASLRLLFDKMASRKVLDFFREKKLDHH SLQTLKFKLLAVNSVLNDAEEQQHIMNLSVQEWLDELKDALYEAEDLFAEITSEVVKS DMEAGYQTPKEQVEALNTALRKIVDRVICIAEEKDFLNLKESPSDKSLPRFPTTSLVN ESEECFRNNEKELIVNSLLSDSAMNGNGIPVIAIAGMGGIGKTTLAQFVYNDERVKTH FTLRAWAYVSERSSDVFKVTETIYESAVLMHSNAKDLNVLQVTLGRVLMGRKFLLVLD DLWNDSLTDWDLLQRPFHFGAGGSKIIVTTRNQSVSSTMHSVLVRSLTPLPYEDCWSI FAKHAFGSEYLTDGDSALESIGKKIVEKCQGLPLAAKALGGLLHSKVEPKEWDDVLNS KLWDLPSGKNHILPALKLSYYHLPSHLKQCFAYCSIFPKGHEIEKGDLVRLWIAEGLV QQQRGTRRTVEVGEQYFDELLCRSFFSRSDHDCSRFKMHDLLNDLAQQIAGEFTFKLE DESLPLNPERVRHLSCIPNRDEAPDKFEAFYEVFNRLRTFLPLRSSPNSSRVPLTPII SNSLFPGSDDKRNSDDRRRNLLTETDDRKKNLFPESSRLRVLSLSPYHITNLPESIGN LKHLRYLDLSHTEIRSLHDRVCSLYNLETLKLSSCFQLTQLPQDMRNLTKLEHLDIKG SKVKEMPPQFGNLRSLQSLTTFVVSKNTSASRISELKKLSLLRGTLSIEGLQNVFQTA DASVANLEGKKYLDELIFQWAPGTHLAHYETEVLDKLRPHEYLKKLRIRHFGGSKLPD WLGDAIFSQMVSLHLVDCENCSSLPPLGQLPCLQELYIVRMRRLRCVGSEFYGSNLKP FRSLEILQFETMPYWQEWLPSSNEGGFPSLQELTVYNCSKLAGNLPNHLPSLVKLHII ECRKLKFFHPNGRNQYSKLEHLHIRSSCCDLETFSFDCFTRLVKLKLQGCIFLRSIEL QSEHEHLTFLRKLKIEDCPILEIFSGRGLLSLQKLKISGCSNLSSFGEAGLPTNLQSF CFEQCRRLPPRDAWGLQNMASLIFFEFDGVKYHGE" mobile_element complement(24400850..24400919) /note="source:INTACT289_F14_scaffold_4-int 1365 1418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24400859..24400913 /note="source:CACAO_M_E5326_F22_scaffold_2 3420 3474" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24401026..24401214 /note="source:CACAO_M_E43348_F5_scaffold_5 5108 5237" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24402635..24403349 /note="source:INTACT687_F13_scaffold_3-int 1298 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24404532..24416054) /locus_tag="TCM_045419" /note="dbxref CacaoGD:Thecc1EG045419" mRNA complement(join(24404532..24404923,24405685..24405732, 24405916..24409847,24412721..24416054)) /locus_tag="TCM_045419" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT3G14460.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045415t1" /inference="similar to AA sequence:ricco:29948.m000709" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc389t5" CDS complement(join(24405730..24405732,24405916..24409743)) /locus_tag="TCM_045419" /note="dbxref ricco:29948.m000709; paralog of Thecc1EG045415t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY20017.1" /db_xref="TAIR:AT3G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I6Q9" /translation="MHDAEEKQIENSSVKVWLRRLEDVFYDADDLLDEISYDAIKRDL EAASKTSKSWASIFGAASAQRYGKGIRSKMERIFAEIEQIAEERAKFHLIEGTVSVSS NSVTTSFVDKSVIVGREKDKTEIVSRLLQSEDASASVEAIGIVGMGGLGKTTLAQLVF NDDRVKTNFDLRAWVCVSDLFDIREIMKTILEYATLGTSDFNDLNVLQSELSQRLSGR RFLLVLDDVWTENFRDWEILKSPLLSGARGSKILVTTRNQNVAIIACSTSHLLPLLGV NECWAIFARYAFVDRSKSEIERLEDIGKRIVLKCGGLPLAVKAIAGVLRLKRSREEWL QVLNSTPWELDVVDYVLPTLRLSYNHLPPLLKQCFAYCSMFPKDNKFDKEKLVLLWMA QGFLQQSHGATMEEVGFEYFDSLLKRSFFQQLGDLYITMHDLMHDLALSVSERLCSIL DVDYGMVSAISNRTRHLLMIGKFDAPEKFRVIDQAKTLRTLFLINTSPDQLSPQLLKD LPVRQQQLRALSLPHCQITELPTSIGNLKHLRYLDLSHSTLERLPKSLGTLYFLQTLI LTNCSSLNMLPEGIVNLVNLRHLHIKGTCLLQMPEEMGRLTSLQTLTNFVVGCGGSQI KELGTLLDLRTLSLSELQNVTSASDATKASLNAKKYLNELQLQWSGTSTDPTKEGEIL RNLEPCKELKNLTIRFYGGIEFPSWLGDSFSNIIFLHLSDSNNCSSLPPLGQLPSLEH LIIERISGVTSIGNEFYGEDKPFQHLKRLKFEGMSRWEQWISPELEEGFEFPCLEELY IQNCPNLEGGLPESLPSLLKLEISNCQQLNAQLPRVPGSCEPELYGCDQVQRRNEKMP LRSDDEVASQLLSTVADQISIHSYGGFSRSSSLLSKNSHDDPSTSKMSEIPKVADKHD DQIQTVSSEDGKQHFLSFASFKVSSVTQLMDLPPDLLSLRIESCDALDSLPSGIKDRS FEELYIIDCISFKTFPQGHLTTSLKTLYIRNCRNLEFPQPKILNQFIILEDLCLGSSC DHLKSFPLNSLPNLKTLSLWDCKNLVSLSIEKELQNDIKSLDALEIRDCPNLTTFPKE GLQALSLTSLVLSNCGNLKSLPRWMQSLISLHSLHINRCPELESLPSMGLPSSLNILC INFCDKITPQRAWELDKLDSLRHFEIEGGCKGMLSFPEDGLLPTNLKSLRISRLLNLK CLDENGLQQLTSLQTLEINCCNELRCLPEDGLPYSLSFLRITDCSMLNQKLQKRKGKE WFKIAHIASINLDE" gene complement(24412367..24415903) /locus_tag="TCM_045420" /note="dbxref CacaoGD:Thecc1EG045420" mRNA complement(join(24412367..24412573,24412662..24415903)) /locus_tag="TCM_045420" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT3G14470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045418t1" /inference="similar to AA sequence:TAIR:AT3G14470.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc673t2" CDS complement(24412707..24415751) /locus_tag="TCM_045420" /note="paralog of Thecc1EG045418t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY20018.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LRR4" /translation="MVLEVALAVGGAFLSSFLSVLFEKMASPQFLNLLKQQKLKRDLW QNLEILLLTVDKVLADAEDKQIKNPSVRKWLDMLKDAAYDAEDLLDAIATEDKRGRLD RDKKVQFNARLEHLHQKLKDIAAQKDALSLKESYGGRPVPRLPTTSLVDESEVCFRED VKDQILDFLVSVAKDEDKVPVVAIEGMGGIGKTTLAQFLFNDERVKSYFDLRTWAYVS EEFDVFKVTKTIFESIILWHCNISDLNALQLVLGKRLMGRRFLLVLDDVWNESFVDWD LLRRPFQDGAPGSKIIVTTRSQNVSFTMRSVLVHHLQPLPDEDCWSLFAKHAFKNKGS GEDPTLKAIGKKIVEKCKGLPLAAKTLGGLLRYKVEAEDWYNVLNSKIWDLPNEKSSI LPALRLSYYHLPSHLKRSFAYCSIYPKGLEFEKGNLVRLWIAEGLVLQPNGQRRMEDV GGQYFDELLSRSLFQQSSCNNSCFEMHDLVNDLAQDVAGEFCFKFEDGSLPHRPERVR HLSCIPKQDEAPEKFEAFYGVFKSLRTFLPLRLSNSGKVFLNPIVLKNLFPVSGCLRV LSLSPYHVTKLPDSISNLKHLRYLDLSHTDIQNLPEGVGSLYNLETLNLSHCHSLTQL PANTGNLTKLEHLDIRGTAVTEMPENFGNLKCLQFLSGFFVSRNSESRISELKDLSLL FGTLSILGLQNVFQPEDASKANLKDKKYLNELILKWATYDTHNATEVLEKLCPHENLK KLHIERFGGTRLPEWLGDALFSKVESLQLVDCGNCSSLPSLGQLPSLKELHIVRMKVV QEVGDEFYGNDVLPFKSLETLLFRGMLDWQRWLPFKDGAFPSLQQLIVHKCPKLTGCL PSLLPSLVTLDIYECKKLEFLHPNGTNQYSALERLYIRKSCEDLISLPLGSLTKLRKI KLLDCKFLRSVGMPLDCHEDLKFLRKLKIKNCDDLGTFDARGLSSLQKLKIVHCSNLF TFGEGGLPSSLQSISIRNCKNLPPQETWGLEGMGSLRHCEVN" gene complement(24416586..24417210) /locus_tag="TCM_045421" /note="dbxref CacaoGD:Thecc1EG045421" mRNA complement(join(24416586..24416876,24416961..24417054, 24417160..24417210)) /locus_tag="TCM_045421" /product="Hypoxia-responsive family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032718001.2" /inference="similar to AA sequence:Phytozome:GSVIVT01032718001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6619t1" CDS complement(join(24416774..24416876,24416961..24417054, 24417160..24417208)) /locus_tag="TCM_045421" /codon_start=1 /product="Hypoxia-responsive family protein" /protein_id="EOY20019.1" /db_xref="Phytozome:GSVIVT01032718001" /translation="MEAIQSWVSEHKLTSIGAIWASAIGASLAYNTRARTPLKPSLRL IHARMHAQALTLAVLSGAAAYHYYEKSSSKEEKVTNA" mobile_element complement(24422373..24424053) /note="source:CACAO_M_S_E119874_F3_scaffold_10 1 1681" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24426375..24429810 /locus_tag="TCM_045423" /note="dbxref CacaoGD:Thecc1EG045423" mRNA join(24426375..24426816,24427310..24427445, 24428393..24428456,24429242..24429810) /locus_tag="TCM_045423" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b043809t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00596t00003" mRNA join(24426375..24426816,24427310..24427445, 24428393..24428456,24429325..24429759) /locus_tag="TCM_045423" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence:Phytozome:GSVIVT01032717001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00596t00003" CDS join(24426453..24426816,24427310..24427445, 24428393..24428456,24429325..24429468) /locus_tag="TCM_045423" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20020.1" /db_xref="Phytozome:GSVIVT01032717001" /translation="MEETKPSTTKPRSEASKRRPFTEVTNLIPSSLPSSQSSSSSLIK PPTKSSLALDLKSPLNKPNSDINSNSKFTAVESTTNDNDSNKKGKNKKKEKEKGKSQS NKAKLSPMLSPLQKTPSVSGTADSVGFEPCTVYSRRHTADKRKSKGKEIAEPFSWSLE MRMPDLSEKKDGDGDIGLSKSCPLPRKRKQRIEKAKVNASKNDLPQDFIDRQRAYFAE VDAFELEEEVASDEELE" CDS join(24426453..24426816,24427310..24427445, 24428393..24428456,24429242..24429274) /locus_tag="TCM_045423" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY20021.1" /translation="MEETKPSTTKPRSEASKRRPFTEVTNLIPSSLPSSQSSSSSLIK PPTKSSLALDLKSPLNKPNSDINSNSKFTAVESTTNDNDSNKKGKNKKKEKEKGKSQS NKAKLSPMLSPLQKTPSVSGTADSVGFEPCTVYSRRHTADKRKSKGKEIAEPFSWSLE MRMPDLSEKKDGDGDIGLSKSCPLPRKRLFSVHKDMCP" gene complement(24429996..24431594) /locus_tag="TCM_045424" /note="dbxref CacaoGD:Thecc1EG045424" mRNA complement(join(24429996..24430674,24430757..24430922, 24430994..24431185,24431276..24431594)) /locus_tag="TCM_045424" /product="Peroxidase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g05850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045429t1" /inference="similar to AA sequence:Phytozome:Glyma14g05850.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10027t00001" CDS complement(join(24430286..24430674,24430757..24430922, 24430994..24431185,24431276..24431482)) /locus_tag="TCM_045424" /note="paralog of Thecc1EG045429t1" /codon_start=1 /product="Peroxidase superfamily protein" /protein_id="EOY20022.1" /db_xref="Phytozome:Glyma14g05850.1" /db_xref="TAIR:AT5G05340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVL1" /translation="MACYHLLFLILIAAVASFQANCQLSPDYYSSTCPQVLPIVQAAV AAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDNATFIGEKTAVPNNNSARGFNVV DDIKARLEKACPGVVSCADILALASRDSVVQLGGPSWKVRLGRRDSTTASRSAANTSI PPPTSNLSALISSFSAQGLSIKDLVTLSGSHTIGLARCTSFRPHIYNDSNIDRSFAAS RRRTCPRSGNDSVLAPLDRQTPTFFDNLYYKNLLNKTGLLRSDQELFNRSSTTALLVK SYATNTSLFFQEFVKSIIKMGNIKPLTGSAGEIRINCRKIN" gene complement(24431808..24447232) /locus_tag="TCM_045425" /note="dbxref CacaoGD:Thecc1EG045425" mRNA complement(join(24431808..24432328,24432523..24432753, 24432830..24433022,24433195..24433330,24446759..24447232)) /locus_tag="TCM_045425" /product="Peroxidase superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045429t1" /inference="similar to AA sequence:Phytozome:Glyma14g05850.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc1258t8" CDS complement(join(24431934..24432328,24432523..24432753, 24432830..24433022,24433195..24433326)) /locus_tag="TCM_045425" /note="paralog of Thecc1EG045429t1" /codon_start=1 /product="Peroxidase superfamily protein, putative" /protein_id="EOY20023.1" /db_xref="Phytozome:Glyma14g05850.1" /db_xref="TAIR:AT5G05340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVL1" /translation="MACYYLLVLLILIVSGAPVEVHGKLSSNYYSSTCPEVMSIVEAR GRGGSILLDDNATFMREKTAAPNDKSVKGFDVVDDINAKVEKACPEVVSCADILAIAA RDSDCQGSWLGWVAVVSSSILVPFYDFQLGGSSSKVKLGRRDSTTASRAAADNSIPGP NFNVSALPLSYAAQGLSLKDLVAFSGSHTFGLPRCITFQTHIYNDSNIDATFAMSLQR KCPKNGKDNVYQPLDFQTPTYFDNLYFKNLLRMMGLLRSDQELFSGTSADYLVKKYAA DNSAFFKAFAKSMIKMGNIKPLTVSPGDQEQLQSSQFNSN" mobile_element 24439135..24441818 /note="source:CACAO_M_E49559_F88_scaffold_7 6485 9174" /mobile_element_type="retrotransposon:LTR/Copia" gene 24443475..24445271 /locus_tag="TCM_045428" /note="dbxref CacaoGD:Thecc1EG045428" mRNA join(24443475..24443569,24443729..24444063, 24444670..24445271) /locus_tag="TCM_045428" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS join(24443809..24444063,24444670..24444852) /locus_tag="TCM_045428" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20024.1" /translation="MNDGTQEKYYRELISLAVEEAWQGVVGQFQLGLGTCECNTRSGE EHAGGETLYPLVQNLEPAAAAKVTGMFTCTSVFVSVITNSEKQRMEKAEVNASKNDLP QDFIDKQRAYSAEVDAFELEEEVASDEELEQMEKYMTKSFRIM" mobile_element 24445632..24446815 /note="source:INTACT1604F_F75_scaffold_10-int 109 1295" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(24447255..24449409) /locus_tag="TCM_045429" /note="dbxref CacaoGD:Thecc1EG045429" mRNA complement(join(24447255..24448052,24448240..24448405, 24448532..>24448636)) /locus_tag="TCM_045429" /product="Peroxidase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032715001" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s13690.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045424t1" /inference="similar to AA sequence:ricco:29729.m002333" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc249t6; inference alignment:Newbler:10:TSA:cgbaB_g11313t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc254t13" mRNA complement(join(24447622..24448052,24448240..24448405, 24448532..24448723,24448819..24449409)) /locus_tag="TCM_045429" /product="Peroxidase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032715001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045424t1" /inference="similar to AA sequence:Phytozome:Glyma14g05850.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11313t00001" CDS complement(join(24447667..24448052,24448240..24448405, 24448532..24448723,24448819..24449028)) /locus_tag="TCM_045429" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG045424t1" /codon_start=1 /product="Peroxidase superfamily protein isoform 1" /protein_id="EOY20025.1" /db_xref="Phytozome:Glyma14g05850.1" /db_xref="TAIR:AT5G05340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVL1" /translation="MACYFLLVLLILTVSGASVEAHGKLSPNYYSSTCPEVLSIVKER VRVAIKKEARMGASLLRLHFHDCFVNGCDGSLLLDDTATFIGEKTAAPNNNSVRGFYV VDDIKAKVEKACPGVVSCADILAIAARDSTAMLGGPSWEVKLGRRDSTTASRAAANNS IPAPTFNISGLLLSFAAQGLSLEDLVALSGSHTIGLARCTSFRTHIYNDSNIDASFAK SLQRKCPKSGKDNVHQPLDFQTPTSFDNLYYHNLLKMKGLLHSDQELFNGASADCLVE EYAADTSAFFKAFAKSMIKMGDIKPLTGSSGEIRTNCRKVN" CDS complement(join(24447667..24448052,24448240..24448405, 24448532..>24448636)) /locus_tag="TCM_045429" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002333; paralog of Thecc1EG045424t1" /codon_start=1 /product="Peroxidase superfamily protein isoform 2" /protein_id="EOY20026.1" /db_xref="TAIR:AT5G05340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GWS4" /translation="FYVVDDIKAKVEKACPGVVSCADILAIAARDSTAMLGGPSWEVK LGRRDSTTASRAAANNSIPAPTFNISGLLLSFAAQGLSLEDLVALSGSHTIGLARCTS FRTHIYNDSNIDASFAKSLQRKCPKSGKDNVHQPLDFQTPTSFDNLYYHNLLKMKGLL HSDQELFNGASADCLVEEYAADTSAFFKAFAKSMIKMGDIKPLTGSSGEIRTNCRKVN " mobile_element 24452911..24454462 /note="source:CACAO_M_S_E66039_F17_scaffold_5 1 1524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24454406..24454470) /note="source:CACAO_M_S_E89272_F5_scaffold_8 10930 10996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24456934..24456993 /note="source:CACAO_M_E12463_F12_scaffold_3 4597 4657" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24460868..24460957) /note="source:scaffold_1_CACTA_0016 6347 6435" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24462217..24462625 /note="source:CACAO_MITE_S153_scaffold_6 1 430" /mobile_element_type="transposon:TIR/MITE" gene 24464415..24465609 /locus_tag="TCM_045431" /note="dbxref CacaoGD:Thecc1EG045431" mRNA join(24464415..24464751,24464999..24465609) /locus_tag="TCM_045431" /product="Poly(A) binding 8-like protein" /inference="alignment:exonerate- protein:2:TAIR:AT3G19350.1" /inference="similar to AA sequence:Phytozome:GSVIVT01009461001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc728t1" CDS join(24464485..24464751,24464999..24465355) /locus_tag="TCM_045431" /codon_start=1 /product="Poly(A) binding 8-like protein" /protein_id="EOY20027.1" /db_xref="Phytozome:GSVIVT01009461001" /db_xref="TAIR:AT1G49760.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F2CTY9" /translation="MARRGGSISTMALGLALATATPDQVRTVLGERLHPLVQNLEPAA AARVTGMLLELDRTEVLHLLESPEALKSRVAEAMEVLISAACTPLGTAVGTGKARRGG STSRRPISMRTLLRSALANATPDQERTILGERLYPLVEKLEPAAAAKVTGMLLELGRT EILHLLESPVALTSMVAQAIGVLRNSAQQRQDQTGGAKSRSIGHHCH" mobile_element complement(24468741..24468829) /note="source:INTACT1334F_F383_scaffold_8-int 4353 4442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24468902..24468965) /note="source:INTACT1334F_F383_scaffold_8-int 4150 4213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24469727..24470129) /note="source:INTACT1334F_F383_scaffold_8-int 3039 3431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24470665..24470708) /note="source:scaffold_2_CACTA_0277 6149 6195" /mobile_element_type="transposon:TIR/CACTA" gene complement(24471312..24475979) /locus_tag="TCM_045433" /note="dbxref CacaoGD:Thecc1EG045433" mRNA complement(join(24471312..24471519,24471689..24471808, 24472105..24472212,24474228..24474330,24475693..24475979)) /locus_tag="TCM_045433" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc3127t1" CDS complement(join(24471370..24471519,24471689..24471808, 24472105..24472212,24474228..24474278)) /locus_tag="TCM_045433" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20028.1" /translation="MYMANPSMPANHWDILLKEEKQHQLTFSKLFECTYKRQKGTREF VDNKSMAVCESYTLAISQKYSVEPSSQPKFDLEVWIEAIRGPTDRFDTKIIRSKRSQP KLDASGVPYHGSQIRSLHHSRSSSHPTLSVRFVFILNVYI" mobile_element complement(24471859..24471907) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3097 3145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24472014..24472241 /note="source:scaffold_4_CACTA_0497 1181 1408" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24472238..24475378 /note="source:scaffold_4_CACTA_0497 3983 5633" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24472531..24475408) /note="source:scaffold_9_CACTA_0937 998 3746" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24475415..24476380 /note="source:CACAO_M_E42484_F240_scaffold_5 572 1526" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24476354..24479205 /locus_tag="TCM_045434" /note="dbxref CacaoGD:Thecc1EG045434" mRNA join(24476354..24476650,24478267..24478633, 24478764..24479205) /locus_tag="TCM_045434" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040299t1" /inference="similar to AA sequence:frave:gene30122" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc909t1" CDS join(24476555..24476650,24478267..24478633, 24478764..24478981) /locus_tag="TCM_045434" /note="dbxref frave:gene30122; paralog of Thecc1EG040299t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20029.1" /translation="MNGSNYTRRRNSIGTIKYSSSYVRRGTTEWPKLKQEFEMTYIGA MTFLLGMEFIQKPEYICIHQTKYARELLKRFKMESCKAVDTSLISSIKLYKNYGSGGA NGFLYRSRVACLSYLIASRHDIMYAASILSRFMKDPSELHLVAAKRVLGYVKDIAAQS TAKAEYIAATAATNHVLWFRKILDNIGFKQEKETILWADKQSDIDIANNPVHHGKTKH TRVRYHTI" mobile_element 24480684..24481438 /note="source:CACAO_on_E2_scaffold_1 1 739" /mobile_element_type="transposon:TIR/hAT" mobile_element 24481477..24481907 /note="source:CACAO_on_E2_scaffold_1 752 1130" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24482913..24483005) /note="source:scaffold_4_CACTA_0482 7634 7726" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24484862..24484945 /note="source:scaffold_4_CACTA_0483 1074 1160" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24485341..24485424 /note="source:scaffold_4_CACTA_0483 1074 1160" /mobile_element_type="transposon:TIR/CACTA" gene 24490364..24494415 /locus_tag="TCM_045435" /note="dbxref CacaoGD:Thecc1EG045435" mRNA join(24490364..24490696,24490831..24491048, 24491822..24492378,24493254..24494415) /locus_tag="TCM_045435" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002332" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003950t1" /inference="similar to AA sequence:ricco:29729.m002332" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05556t00001" CDS join(24490594..24490696,24490831..24491048, 24491822..24492378,24493254..24494130) /locus_tag="TCM_045435" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29729.m002332; paralog of Thecc1EG003950t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY20030.1" /db_xref="TAIR:AT2G40460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22305" /translation="METKGYTQDGTVDLRGRPVLASKTGRWKACAFLVGYEAFERMAF YGIASNLVNYLTTQLHEDTVASVRNVNNWSGSVWITPILGAYIADTYLGRFWTFTVSS LIYVMGMTMLTTAVSLKSLKPTCRDGVCNKASTIQIAFFYTSLYTIAIGAGGTKPNIS TFGADQFDDFNPHEKELKVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYMIPTV GLLFSLFVFYLGTPIYRHKVRKTKSPARDLIQVPITAIKNRKLQLPDNPSELHEHEPQ HYINSGKRQVYYTPIFRFLDKAAVKDGNSSGRPPCTVTQVEGTKLVLGMLLIWLVTLI PSTIWAQINTLFVKQGTTLDRSLGSSFQIPAASLGSFVTLSMLISVPMYDRYFVPFMR RKTGNPRGITLLQRLGIGFVIQVIAIAIAYAVEVRRMHVIRVHQIVGPKQIVPMNIFW LLPQYVLLGVADVFNAIGLLEFFYDQSPEEMQSLGTTFFTSGIGVGNFLNSLLVTMVD KITGRGENKSWIGDNLNDCHLDYYYGFLLVISTLNLGAFLWASSKYVYKRETKEVNED CIGIENKALEISPLGLQV" mRNA join(24491592..24491645,24491822..24492378, 24493254..24494375) /locus_tag="TCM_045435" /product="Major facilitator superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29729.m002332" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020953t1" /inference="similar to AA sequence:ricco:29729.m002332" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc622t5; inference alignment:Newbler:10:TSA:cgbaL_g05556t00001" CDS join(24491825..24492378,24493254..24494130) /locus_tag="TCM_045435" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002332; paralog of Thecc1EG020953t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 2" /protein_id="EOY20031.1" /db_xref="TAIR:AT2G40460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22305" /translation="MTMLTTAVSLKSLKPTCRDGVCNKASTIQIAFFYTSLYTIAIGA GGTKPNISTFGADQFDDFNPHEKELKVSFFNWWMFSSFLGALFATLGLVYIQENLGWG LGYMIPTVGLLFSLFVFYLGTPIYRHKVRKTKSPARDLIQVPITAIKNRKLQLPDNPS ELHEHEPQHYINSGKRQVYYTPIFRFLDKAAVKDGNSSGRPPCTVTQVEGTKLVLGML LIWLVTLIPSTIWAQINTLFVKQGTTLDRSLGSSFQIPAASLGSFVTLSMLISVPMYD RYFVPFMRRKTGNPRGITLLQRLGIGFVIQVIAIAIAYAVEVRRMHVIRVHQIVGPKQ IVPMNIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEEMQSLGTTFFTSGIGVGNFLN SLLVTMVDKITGRGENKSWIGDNLNDCHLDYYYGFLLVISTLNLGAFLWASSKYVYKR ETKEVNEDCIGIENKALEISPLGLQV" gene complement(24494725..24502057) /locus_tag="TCM_045436" /note="dbxref CacaoGD:Thecc1EG045436" mRNA complement(join(24494725..24495256,24496280..24496327, 24497095..24497185,24497990..24498105,24498192..24498252, 24500391..24501697,24501819..24501972)) /locus_tag="TCM_045436" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29671.m000293" /inference="similar to AA sequence:Phytozome:POPTR_0006s07510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6687t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6687t5" mRNA complement(join(24494725..24495256,24496280..24496305, 24498191..24498252,24500391..24501843)) /locus_tag="TCM_045436" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s07510.1" /inference="alignment:exonerate- protein:2:ricco:29671.m000293" /inference="similar to AA sequence:Phytozome:POPTR_0006s07510.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc463t4_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6687t5; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc474t5_C1" mRNA complement(join(24494740..24495256,24496280..24496327, 24497095..24497185,24497990..24498105,24498192..24498252, 24500391..24501697,24501819..24502053)) /locus_tag="TCM_045436" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s07510.1" /inference="alignment:exonerate- protein:2:ricco:29671.m000293" /inference="similar to AA sequence:Phytozome:POPTR_0006s07510.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17464t1; alternateUTRof:Thecc1EG045436t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6687t5; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc474t5_C1" CDS complement(join(24495140..24495256,24496280..24496327, 24497095..24497185,24497990..24498105,24498192..24498252, 24500391..24501577)) /locus_tag="TCM_045436" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1" /protein_id="EOY20032.1" /db_xref="Phytozome:POPTR_0006s07510.1" /db_xref="TAIR:AT2G19260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5N1" /translation="MLIETSISSSIHAGLYYVSEHRKQDSLSDWMPGYETRQMSPKCD VPSQSECKEAEYSCPPLPRTGSQQSSVSVMSEGPVPTLVYSRRKKRRGSSSSASAAVA NFCAEAPVNSKRSGDCLSVVSSDALSVAVMEQNGVSQVGHGNVATGDLLTPLACSREP HISKYEFANGFSGVDNHGSDDVRKTVRQKTIDVDSINDSCSSSKSNMELALASIKGEM DENGECCSSSVIAAEVVREDLSEKDRCFSILRNQGNVEEVGPSRAPLNEEIGTSGASS CSRVCKICGRSETAQKMLICDNCEEAFHLRCCNPRIKKVPVDEWYCFSCMKKKRIMVK DTTARNSSSITGCMGRCRGVSSEGESSPIELMLRDAEPYRTSVRIGKGFQADVPDWSG PIDDDVDTIGEPLEWDLLEFTDFNELNCNKSSKVSSIGNWLQCREFIEGIGGSNGTIC GKWRRAPLFEVQTDDWECFCSVQWDPSHADCSVPQELETDQVLKQLKYIEMLRPRLSA KRRKSHQTMNCTSQDHKDDKRNTQNKRLARH" CDS complement(join(24495140..24495256,24496280..24496327, 24497095..24497185,24497990..24498105,24498192..24498252, 24500391..24501577)) /locus_tag="TCM_045436" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1" /protein_id="EOY20033.1" /db_xref="Phytozome:POPTR_0006s07510.1" /db_xref="TAIR:AT2G19260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5N1" /translation="MLIETSISSSIHAGLYYVSEHRKQDSLSDWMPGYETRQMSPKCD VPSQSECKEAEYSCPPLPRTGSQQSSVSVMSEGPVPTLVYSRRKKRRGSSSSASAAVA NFCAEAPVNSKRSGDCLSVVSSDALSVAVMEQNGVSQVGHGNVATGDLLTPLACSREP HISKYEFANGFSGVDNHGSDDVRKTVRQKTIDVDSINDSCSSSKSNMELALASIKGEM DENGECCSSSVIAAEVVREDLSEKDRCFSILRNQGNVEEVGPSRAPLNEEIGTSGASS CSRVCKICGRSETAQKMLICDNCEEAFHLRCCNPRIKKVPVDEWYCFSCMKKKRIMVK DTTARNSSSITGCMGRCRGVSSEGESSPIELMLRDAEPYRTSVRIGKGFQADVPDWSG PIDDDVDTIGEPLEWDLLEFTDFNELNCNKSSKVSSIGNWLQCREFIEGIGGSNGTIC GKWRRAPLFEVQTDDWECFCSVQWDPSHADCSVPQELETDQVLKQLKYIEMLRPRLSA KRRKSHQTMNCTSQDHKDDKRNTQNKRLARH" CDS complement(join(24495140..24495256,24496280..24496305, 24498191..24498252,24500391..24501577)) /locus_tag="TCM_045436" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 5" /protein_id="EOY20036.1" /db_xref="Phytozome:POPTR_0006s07510.1" /db_xref="TAIR:AT2G19260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5N1" /translation="MLIETSISSSIHAGLYYVSEHRKQDSLSDWMPGYETRQMSPKCD VPSQSECKEAEYSCPPLPRTGSQQSSVSVMSEGPVPTLVYSRRKKRRGSSSSASAAVA NFCAEAPVNSKRSGDCLSVVSSDALSVAVMEQNGVSQVGHGNVATGDLLTPLACSREP HISKYEFANGFSGVDNHGSDDVRKTVRQKTIDVDSINDSCSSSKSNMELALASIKGEM DENGECCSSSVIAAEVVREDLSEKDRCFSILRNQGNVEEVGPSRAPLNEEIGTSGASS CSRVCKICGRSETAQKMLICDNCEEAFHLRCCNPRIKKVPVDEWYCFSCMKKKRIMVK DTTARNSSSITGCMGRCRGVSSEGESSPIELMLRDAEPYRTSVRIGKGFQADVPDWSG PIDDDVDTIGEPLEWDLLEFTDFNVKQLKYIEMLRPRLSAKRRKSHQTMNCTSQDHKD DKRNTQNKRLARH" mRNA complement(join(24495696..24496327,24497095..24497185, 24497990..24498105,24498192..24498252,24500391..24501717, 24501819..24502057)) /locus_tag="TCM_045436" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s07510.1" /inference="alignment:exonerate- protein:2:ricco:29671.m000293" /inference="similar to AA sequence:Phytozome:POPTR_0006s07510.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc460t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6687t5; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc474t5_C1" mRNA complement(join(24495999..24496327,24497095..24497185, 24497990..24498105,24500391..24501927)) /locus_tag="TCM_045436" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s07510.1" /inference="alignment:exonerate- protein:2:ricco:29671.m000293" /inference="similar to AA sequence:Phytozome:POPTR_0006s07510.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc467t2; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc474t5_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6687t5" CDS complement(join(24496256..24496327,24497095..24497185, 24497990..24498105,24498192..24498252,24500391..24501577)) /locus_tag="TCM_045436" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 3" /protein_id="EOY20034.1" /db_xref="Phytozome:POPTR_0006s07510.1" /db_xref="TAIR:AT2G19260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5N1" /translation="MLIETSISSSIHAGLYYVSEHRKQDSLSDWMPGYETRQMSPKCD VPSQSECKEAEYSCPPLPRTGSQQSSVSVMSEGPVPTLVYSRRKKRRGSSSSASAAVA NFCAEAPVNSKRSGDCLSVVSSDALSVAVMEQNGVSQVGHGNVATGDLLTPLACSREP HISKYEFANGFSGVDNHGSDDVRKTVRQKTIDVDSINDSCSSSKSNMELALASIKGEM DENGECCSSSVIAAEVVREDLSEKDRCFSILRNQGNVEEVGPSRAPLNEEIGTSGASS CSRVCKICGRSETAQKMLICDNCEEAFHLRCCNPRIKKVPVDEWYCFSCMKKKRIMVK DTTARNSSSITGCMGRCRGVSSEGESSPIELMLRDAEPYRTSVRIGKGFQADVPDWSG PIDDDVDTIGEPLEWDLLEFTDFNELNCNKSSKVSSIGNWLQCREFIEGIGGSNGTIC GKWRRAPLFEVQTDDWECFCSVQWDPSHADCSVPQELETDQVLKQLKYIEMVCADALI " mRNA complement(join(<24497160..24497185,24500391..24502057)) /locus_tag="TCM_045436" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s07510.1" /inference="alignment:exonerate- protein:2:ricco:29671.m000293" /inference="similar to AA sequence:Phytozome:POPTR_0006s07510.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc460t6; alternateUTRof:Thecc1EG045436t6; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc474t5_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6687t5" mRNA complement(join(<24497160..24497185,24500391..24501843)) /locus_tag="TCM_045436" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s07510.1" /inference="alignment:exonerate- protein:2:ricco:29671.m000293" /inference="similar to AA sequence:Phytozome:POPTR_0006s07510.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc463t1; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc474t5_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6687t5" CDS complement(join(<24497161..24497185,24500391..24501577)) /locus_tag="TCM_045436" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 6" /protein_id="EOY20037.1" /db_xref="Phytozome:POPTR_0006s07510.1" /translation="MLIETSISSSIHAGLYYVSEHRKQDSLSDWMPGYETRQMSPKCD VPSQSECKEAEYSCPPLPRTGSQQSSVSVMSEGPVPTLVYSRRKKRRGSSSSASAAVA NFCAEAPVNSKRSGDCLSVVSSDALSVAVMEQNGVSQVGHGNVATGDLLTPLACSREP HISKYEFANGFSGVDNHGSDDVRKTVRQKTIDVDSINDSCSSSKSNMELALASIKGEM DENGECCSSSVIAAEVVREDLSEKDRCFSILRNQGNVEEVGPSRAPLNEEIGTSGASS CSRVCKICGRSETAQKMLICDNCEEAFHLRCCNPRIKKVPVDEWYCFSCMKKKRIMVK DTTARNSSSITGCMGRCRGVSSEGESSPIELMLRDAEPYRTSVRIGKGFQADVPDWSG PIDEAPLFEVQT" CDS complement(join(<24497161..24497185,24500391..24501577)) /locus_tag="TCM_045436" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 6" /protein_id="EOY20038.1" /db_xref="Phytozome:POPTR_0006s07510.1" /translation="MLIETSISSSIHAGLYYVSEHRKQDSLSDWMPGYETRQMSPKCD VPSQSECKEAEYSCPPLPRTGSQQSSVSVMSEGPVPTLVYSRRKKRRGSSSSASAAVA NFCAEAPVNSKRSGDCLSVVSSDALSVAVMEQNGVSQVGHGNVATGDLLTPLACSREP HISKYEFANGFSGVDNHGSDDVRKTVRQKTIDVDSINDSCSSSKSNMELALASIKGEM DENGECCSSSVIAAEVVREDLSEKDRCFSILRNQGNVEEVGPSRAPLNEEIGTSGASS CSRVCKICGRSETAQKMLICDNCEEAFHLRCCNPRIKKVPVDEWYCFSCMKKKRIMVK DTTARNSSSITGCMGRCRGVSSEGESSPIELMLRDAEPYRTSVRIGKGFQADVPDWSG PIDEAPLFEVQT" CDS complement(join(24498099..24498105,24500391..24501577)) /locus_tag="TCM_045436" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 4" /protein_id="EOY20035.1" /db_xref="Phytozome:POPTR_0006s07510.1" /translation="MLIETSISSSIHAGLYYVSEHRKQDSLSDWMPGYETRQMSPKCD VPSQSECKEAEYSCPPLPRTGSQQSSVSVMSEGPVPTLVYSRRKKRRGSSSSASAAVA NFCAEAPVNSKRSGDCLSVVSSDALSVAVMEQNGVSQVGHGNVATGDLLTPLACSREP HISKYEFANGFSGVDNHGSDDVRKTVRQKTIDVDSINDSCSSSKSNMELALASIKGEM DENGECCSSSVIAAEVVREDLSEKDRCFSILRNQGNVEEVGPSRAPLNEEIGTSGASS CSRVCKICGRSETAQKMLICDNCEEAFHLRCCNPRIKKVPVDEWYCFSCMKKKRIMVK DTTARNSSSITGCMGRCRGVSSEGESSPIELMLRDAEPYRTSVRIGKGFQADVPDWSG PIDEN" gene 24507368..24509439 /locus_tag="TCM_045437" /note="dbxref CacaoGD:Thecc1EG045437" mRNA join(24507368..24507633,24507941..24508132, 24508239..24508404,24508673..24509439) /locus_tag="TCM_045437" /product="Peroxidase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020640" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042261t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s08130.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09943t00001" CDS join(24507418..24507633,24507941..24508132, 24508239..24508404,24508673..24509064) /locus_tag="TCM_045437" /note="paralog of Thecc1EG042261t1" /codon_start=1 /product="Peroxidase superfamily protein" /protein_id="EOY20039.1" /db_xref="Phytozome:POPTR_0013s08130.1" /db_xref="TAIR:AT5G05340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVL1" /translation="MASSSSSKFLLTLLLLVLALGSSNAQLSTNYYSKTCPKLFPTVK STVHSAIMKEARMGASLLRLFFHDCFVNGCDGSLLLDDTSSFTGEKNAAPNRNSARGF DVVDNIKSAVEDVCPGVVSCADILTIAARDSVAILGGPNWDVKLGRRDARTASQAAAN NSIPPPTSNLNRLISRFNALGLSTRDMVALSGSHTIGLARCTSFRPRIYNESNIDSSF AQTRQRNCPRTTGSGDNNLAPLDIQTPTFFDNNYFKNLINRRGLLHSDQQLFNGGSTD SIVRGYSNNPSSFSSDFVTGMIKMGDISPLTGSRGEIRKNCRRVN" gene complement(24515138..24516641) /locus_tag="TCM_045438" /note="dbxref CacaoGD:Thecc1EG045438" mRNA complement(join(24515138..24515817,24515915..24516167, 24516446..24516641)) /locus_tag="TCM_045438" /product="LOB domain-containing protein 15" /inference="alignment:exonerate- protein:2:ricco:29729.m002335" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042262t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032714001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc1901t4" CDS complement(join(24515425..24515817,24515915..24516167, 24516446..24516459)) /locus_tag="TCM_045438" /note="paralog of Thecc1EG042262t1" /codon_start=1 /product="LOB domain-containing protein 15" /protein_id="EOY20040.1" /db_xref="Phytozome:GSVIVT01032714001" /db_xref="TAIR:AT2G40470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L5T5" /translation="MSRERERFDEIGKKIKREADVSSHHMGRRHMLGPPGTLNTITPC AACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANS LVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKYKCREANLIPSSHVA LLSSGAVSVAALPSAPTHPPPPPPPPPLPPTSSSSSMYTQPTTAADYSTISNENVSYF G" mobile_element 24517885..24517930 /note="source:INTACT594_F265_scaffold_8-int 4486 4531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24517890..24517952 /note="source:scaffold_4_CACTA_0483 17376 17443" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24517925..24518753) /note="source:scaffold_2_CACTA_0276 6394 7240" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24520403..24520476 /note="source:INTACT415F_F22_scaffold_4-int 2182 2252" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24520422..24520469) /note="source:CACAO_M_E3248_F5_scaffold_1 3689 3735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24521890..24522129) /note="source:scaffold_2_CACTA_0248 14098 14328" /mobile_element_type="transposon:TIR/CACTA" gene complement(24523851..24527142) /locus_tag="TCM_045439" /note="dbxref CacaoGD:Thecc1EG045439" mRNA complement(join(24523851..24525131,24527125..24527142)) /locus_tag="TCM_045439" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29729.m002336" /inference="similar to AA sequence:ricco:29729.m002336" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4814t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc608t5_C1" CDS complement(24524233..24524886) /locus_tag="TCM_045439" /note="dbxref ricco:29729.m002336" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20041.1" /translation="MLSDSSRELQPQKGLQIKQDDKFFSRLMSKETSMANSSCRVYYG GASGAVPFMWESQPGTPKHPCSDTTLPPLTPPPSYHSSCKSKSMQKTSMKPTLLSFIF PRLTPRKNHASPSSSRSSTSSSSSFSSRSSSLHGSPSAPRNQKFQRRSYFSFSRSPVH NCIDDDDEEGLGSPTSTLCFGVKRRNLNEFGGCQSMVNMKKALLSIVSHGSGQGTAA" gene 24529367..24532353 /locus_tag="TCM_045440" /note="dbxref CacaoGD:Thecc1EG045440" mRNA join(24529367..24529978,24530308..24530647, 24530768..24530907,24530999..24532353) /locus_tag="TCM_045440" /product="Structural maintenance of chromosomes protein 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s07570.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s07570.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4822t1" CDS join(24529709..24529978,24530308..24530647, 24530768..24530907,24530999..24531805) /locus_tag="TCM_045440" /codon_start=1 /product="Structural maintenance of chromosomes protein 1, putative" /protein_id="EOY20042.1" /db_xref="Phytozome:POPTR_0019s07570.1" /db_xref="TAIR:AT2G40480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9P7W0" /translation="MSAEPQDSPMEGVPGTPGIREVRPESGSENFGFCTETCRAPGGD PNPGIRRVNWRAEIDTSPPFGSVKEAVTRFGGSGPWVPLYKFGEAYHGIEEFDIKKVE EQAAELEKDLIVKELETLDVLEELGTTKRIVEELKRQLQNEALKCMTTPDLNSDEQHM PAPAIKEMNKEHYEQIRIGSSSPCLVSSPDLILMELKQAKLNLGVASLEEELKQVRVK PQIANNGNFENSPSILRPPLHNNSKPEQFKRMMEEAARAAEALALIEMNALTGMKGLS SNENSSGFSLPEPVPSPRTPKVQRAEEVSNRKAIHAMHKFAEENISKLAILRKLEEAS EEVKHSKEVLEEALNRVEIASRKQLDAEEALRRWIPEPEQKKQVMYTATKINNFHPPH HPHQHLPRSPLHDLNNQNPTMDDEAKPVLRPTVSMRDILSRKQVTPEDCAVRRPNNEG HTERQKVALSQMLHELREDLTFPPKPDQKDHGDNPKQYFTQRRKFGFIHISLPLAKQS KKKPQALNTM" mobile_element complement(24532555..24532722) /note="source:scaffold_10_CACTA_0138 1769 1955" /mobile_element_type="transposon:TIR/CACTA" gene 24533863..24536773 /locus_tag="TCM_045441" /note="dbxref CacaoGD:Thecc1EG045441" mRNA join(24533863..24534055,24534203..24534361, 24534958..24535045,24535142..24535228,24535973..24536020, 24536165..24536253,24536369..24536773) /locus_tag="TCM_045441" /product="HMG-box DNA-binding family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29729.m002338" /inference="similar to AA sequence:Phytozome:POPTR_0019s07560.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8652t3" CDS join(24533973..24534055,24534203..24534361, 24534958..24535045,24535142..24535228,24535973..24536020, 24536165..24536253,24536369..24536462) /locus_tag="TCM_045441" /codon_start=1 /product="HMG-box DNA-binding family protein, putative" /protein_id="EOY20043.1" /db_xref="Phytozome:POPTR_0019s07560.1" /db_xref="TAIR:AT5G05330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S4C1" /translation="MANHPRTRKRVHATIPRRAPDGSAFEKCDVCGDMVAIALADMHE CGTEKKELKRFKGIVGTQNVVKPMVPWQPRSAFSIFMESFMIDNNNGNFIDIDRRGFE TWKNMCKEERQPYVAQAEKVNSAYTKNVIEEEKNVKEVDDDEADSAMVGKFDQFYEDS EYYGTSDNDEPYQSGGLESLNTTECPMLCSALLSYDLHKAGKCSNQGPPEHSSSS" gene 24537804..24543621 /locus_tag="TCM_045442" /note="dbxref CacaoGD:Thecc1EG045442" mRNA join(24537804..24537921,24538033..24538152, 24538572..24538640,24538744..24538848,24539203..24539257, 24539676..24539749,24540284..24540367,24540453..24540593, 24541082..24541147,24541962..24542071,24542954..24543621) /locus_tag="TCM_045442" /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032711001" /inference="similar to AA sequence:ricco:29729.m002339" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07296t00001" CDS join(24537826..24537921,24538033..24538152, 24538572..24538640,24538744..24538848,24539203..24539257, 24539676..24539749,24540284..24540367,24540453..24540593, 24541082..24541147,24541962..24542071,24542954..24543122) /locus_tag="TCM_045442" /note="dbxref ricco:29729.m002339" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein" /protein_id="EOY20044.1" /db_xref="TAIR:AT3G10970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BU7" /translation="MNTNMRSSSALLQLRPSLCFSHSLSPSKLILSKSKRLNLVQHRL VIKNSSGFDGNGSVNGFPVKPNKLFMQEAIGAEYGEGFETFRLDGPLKVDVDYLNDRL QEGFLKRIRYAMKPDEAYGLIFSWDNVVSDTRALKLNAWKQLAFEEGKEIPDEGDAQR LMLSAGADHVLHKILLWETAESEVDRLKSRLLQIYYDNLLKLEKPMDGLKEWLDALCT ARIPCAVVSSLDRRNMVDALERFGLKKYFQGLVSEEDGMESMAHKFLSAAMKLDRKPS KCVVFEDDPRGITAAHNCTMMAVALIGAHPAYDLVQADLAVANFNELSVINLRRLFAN KGSTFMDRQKQIIEKTPPKRKLTIDTIF" gene complement(24544002..24547309) /locus_tag="TCM_045444" /note="dbxref CacaoGD:Thecc1EG045444" mRNA complement(join(24544002..24544698,24545922..24547309)) /locus_tag="TCM_045444" /product="Receptor-type tyrosine-protein phosphatase U" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s08640.1" /inference="similar to AA sequence:frave:gene23601" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6697t1" CDS complement(24545976..24547160) /locus_tag="TCM_045444" /note="dbxref frave:gene23601" /codon_start=1 /product="Receptor-type tyrosine-protein phosphatase U" /protein_id="EOY20045.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H398" /translation="MKRKKWSELEEQTLLSKYSDLLNSGTLSKLKTREKKFKPIADHV NSVHHLQDPITFPFKWSWRDVSIKVQNMRHQYLGVKQKIRISKDEFNWKDGENHWENF LKYKEVFGDVELEVKGKKGSESNGNGSDLFEDCCDLGFEIDSEDFEEEEEDDGVDGDG DGDDGGEEKVGSEGEFGGEREFGDVGISRVRKSRKGLGGSKGFGLLGTQVLELRDVVV RREEKRKEREFVREKGEMEREQKRRELEFGKEKRWSEREERVEDREMELEERELVWAR REGDRRLRLEKELDEERRRRRRMEEKREEEEMDWKERLVGLQIEHEKTMMQMHMDACQ NQMQILGVMARLFCQFYGSANDGLGAGLGGLPPQVLQNLQHPGGLGDNVKPDSNSPSE FI" gene 24547437..24552909 /locus_tag="TCM_045445" /note="dbxref CacaoGD:Thecc1EG045445" mRNA join(24547437..24547725,24548823..24548944, 24550223..24550333,24550590..24550778,24551307..24551432, 24551732..24552909) /locus_tag="TCM_045445" /product="Uroporphyrinogen decarboxylase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002340" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047064t1" /inference="similar to AA sequence:Phytozome:Glyma18g02490.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08761t00001" CDS join(24547623..24547725,24548823..24548944, 24550223..24550333,24550590..24550778,24551307..24551432, 24551732..24552247) /locus_tag="TCM_045445" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG047064t1" /codon_start=1 /product="Uroporphyrinogen decarboxylase isoform 1" /protein_id="EOY20046.1" /db_xref="Phytozome:Glyma18g02490.1" /db_xref="TAIR:AT2G40490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPI6" /translation="MSCSSVSSFTSSLFVPPKKSFSNHKRRFIPCSRGGTVVEPKATA TAEPLLLNAVRGQDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISL QPWNVFKPDGVILFSDILTPLSGMNIPFNIVKGKGPVIFDPLGSAADVDKVREFNPEE SVPYVGEALTILRREVDNEAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFSQPKV LHSLLQKFATSMANYIQYQADNGAQVVQIFDSWATELSPVDFEEFSLPYLKQIVDSVK QTHPDLPLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRKRLGHDIAVQGNVDPG VLFGSKEFITNRINDTVRKAGKGKHVLNLGHGIKVGTPEENVAHFFEVAKAIRY" mRNA join(24547655..24547725,24548823..24548934, 24550223..24550333,24550590..24550778,24551307..24551432, 24551732..24552707) /locus_tag="TCM_045445" /product="Uroporphyrinogen decarboxylase isoform 3" /inference="alignment:exonerate- protein:2:ricco:29729.m002340" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047064t1" /inference="similar to AA sequence:Phytozome:Glyma18g02490.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc135t5; inference alignment:Newbler:10:TSA:cgbaB_g08761t00001" mRNA join(24547696..24547725,24548832..24548944, 24550223..24550333,24550590..24550778,24551307..24551432, 24551732..24552680) /locus_tag="TCM_045445" /product="Uroporphyrinogen decarboxylase isoform 2" /inference="alignment:exonerate- protein:2:ricco:29729.m002340" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047064t1" /inference="similar to AA sequence:ricco:29729.m002340" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7601t2; inference alignment:Newbler:10:TSA:cgbaB_g08761t00001" mRNA join(24548905..24548944,24550223..24550333, 24550590..24550776,24551730..24552680) /locus_tag="TCM_045445" /product="Uroporphyrinogen decarboxylase isoform 4" /inference="alignment:exonerate- protein:2:ricco:29729.m002340" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047064t1" /inference="similar to AA sequence:ricco:29729.m002340" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc174t8; inference alignment:Newbler:10:TSA:cgbaB_g08761t00001" CDS join(24548918..24548944,24550223..24550333, 24550590..24550778,24551307..24551432,24551732..24552247) /locus_tag="TCM_045445" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002340; paralog of Thecc1EG047064t1" /codon_start=1 /product="Uroporphyrinogen decarboxylase isoform 2" /protein_id="EOY20047.1" /db_xref="TAIR:AT2G40490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPI6" /translation="MRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWNVFKP DGVILFSDILTPLSGMNIPFNIVKGKGPVIFDPLGSAADVDKVREFNPEESVPYVGEA LTILRREVDNEAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFSQPKVLHSLLQKF ATSMANYIQYQADNGAQVVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKQTHPDLPL ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRKRLGHDIAVQGNVDPGVLFGSKEF ITNRINDTVRKAGKGKHVLNLGHGIKVGTPEENVAHFFEVAKAIRY" CDS join(24548918..24548944,24550223..24550333, 24550590..24550776,24551730..24552247) /locus_tag="TCM_045445" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29729.m002340; paralog of Thecc1EG047064t1" /codon_start=1 /product="Uroporphyrinogen decarboxylase isoform 4" /protein_id="EOY20049.1" /db_xref="TAIR:AT2G40490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPI6" /translation="MRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWNVFKP DGVILFSDILTPLSGMNIPFNIVKGKGPVIFDPLGSAADVDKVREFNPEESVPYVGEA LTILRREVLHSLLQKFATSMANYIQYQADNGAQVVQIFDSWATELSPVDFEEFSLPYL KQIVDSVKQTHPDLPLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRKRLGHDIA VQGNVDPGVLFGSKEFITNRINDTVRKAGKGKHVLNLGHGIKVGTPEENVAHFFEVAK AIRY" CDS join(24550629..24550778,24551307..24551432, 24551732..24552247) /locus_tag="TCM_045445" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG047064t1" /codon_start=1 /product="Uroporphyrinogen decarboxylase isoform 3" /protein_id="EOY20048.1" /db_xref="Phytozome:Glyma18g02490.1" /db_xref="TAIR:AT2G40490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPI6" /translation="MNIPFNIVKGKGPVIFDPLGSAADVDKVREFNPEESVPYVGEAL TILRREVDNEAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFSQPKVLHSLLQKFA TSMANYIQYQADNGAQVVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKQTHPDLPLI LYASGSGGLLERLALTGVDVVSLDWTVDMAEGRKRLGHDIAVQGNVDPGVLFGSKEFI TNRINDTVRKAGKGKHVLNLGHGIKVGTPEENVAHFFEVAKAIRY" gene 24554443..24558230 /locus_tag="TCM_045446" /note="dbxref CacaoGD:Thecc1EG045446" mRNA join(24554443..24554806,24556379..24558230) /locus_tag="TCM_045446" /product="CBL-interacting protein kinase 10" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s07530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019737t2" /inference="similar to AA sequence:Phytozome:POPTR_0019s07530.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9464t2_C2" CDS 24556702..24558054 /locus_tag="TCM_045446" /note="paralog of Thecc1EG019737t2" /codon_start=1 /product="CBL-interacting protein kinase 10" /protein_id="EOY20050.1" /db_xref="Phytozome:POPTR_0019s07530.1" /db_xref="TAIR:AT5G58380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10LQ2" /translation="MENTGKVLMQKYEFGRLLGQGNFAKVYYARNIESSQSVAIKVID KEKVLKVGMIDQTKREISVMSLVKHPNILELYEVMASKSKIYFVMEYAKGGELFNKVA KGKLREDMARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDEDGILKVSDFGLSALTE SKHQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVILYVLLAGYLPFHDSNLI AMYRKISKADYKFPGWFSPEVTKLLSRILNPNPKARISIAKIMSNPWFKKGFNSKPVQ RKAEKELAHVDIDAVFGSETNHIAFEAKKDMAKLTNLNAFDIISLSSGFDLSGLFAEN DKKKDVQFTSMHTASTITSKLEDIAQHLKLKVKKDGGLLKLEGSNGGRKGALAIDAEI FEFTPSFHLVELRKSSGDTLEFRKTLQQDVRPALKDIVWAWQGEQQQQQQQQQHLQSS " gene 24559032..24560473 /locus_tag="TCM_045447" /note="dbxref CacaoGD:Thecc1EG045447" mRNA 24559032..24560473 /locus_tag="TCM_045447" /product="Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain" /inference="alignment:exonerate- protein:2:frave:gene04592.2" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1737t1" CDS 24559405..24560421 /locus_tag="TCM_045447" /codon_start=1 /product="Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain" /protein_id="EOY20051.1" /db_xref="TAIR:AT1G69250.1" /translation="MAAAKACPLPSFTAQEVADSFVRQYYTLLCISPGELHRFYQGSG TSTVSRPAGPDGAMISFRTMEEIKKHVQSSLDCKGYDIHSCDAQFIADGGVFVLVIGR FTAQNDKTRKFNQSFLLAPMEDVNHHRFFVLNDVIRFLDEQETKTMHLGDAPAAVSTN DVPNKAVPRKSFLSMVHALSENPASFKAPPVKTSIRTPPRESNLNGKSCLEGKKNTRN VNNVRETSIFVGNLAMDSKPEDLYEAFKRFGAIKGNGVQIRTDQHNRRFAFIQFETSS SAQSAVEASSIRIGNRTLKIKEKKRNNDSGNRKTSQGFINGNGQENSRGARNFTKGNG PAKH" gene 24561784..24563853 /locus_tag="TCM_045448" /note="dbxref CacaoGD:Thecc1EG045448" mRNA 24561784..24563853 /locus_tag="TCM_045448" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene04592.2" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS 24561876..24563372 /locus_tag="TCM_045448" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20052.1" /translation="MVALTPEEVAKALVKSYYFHLCNARKDVHKFYRDSSMFSRRGPD EVMNQWTTLEAIDDHVVSYFDCKGCVLGIDAQLSIGLGVHVLVVGCMDDDSNTKRKFI QSLVLAPMNKPKAYFILNDVLRFLDEEETPKTLPADITAPNETVKEVQEDATATAAAA AAPPKEASLTAVNALNENNAPEEFAKALVKSYYFHLCNSPEQAHKFYKGSSRLSRQGP NGVMNRCTTLEAIADHFVSYSNCKDCDVLSIDAQLSIGLGVHVVVIGCMTMDNDTNTK RKFIQSFVLAPMNRPKGYFILTDVLRFLDEEELLKTYIKRVDSTAEPNPDPLPADIVA PNESVREVEDATATAAAAPKKSFLTIVNALNENNAPFKAPPVRKPGLGWKKNGRHVDT DKGKSVFVGNLAIGVKAEELHRAFRKFGPIKPNGVKTRSSMHNRCFAFIEFESASSAQ SAIQASSITIGNQKAYIQEMKSKLPSGSSIGNGYGEDNLTRHNDEPGN" gene 24563837..24566239 /locus_tag="TCM_045449" /note="dbxref CacaoGD:Thecc1EG045449" mRNA join(24563837..24563892,24563980..24566239) /locus_tag="TCM_045449" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT2G03640.3" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6710t1" CDS 24563988..24565448 /locus_tag="TCM_045449" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20053.1" /translation="MVTAVEADAFVKQYYCLPRDNQSLIDRYYNDSSSVKWSGEDGVM RDVTTMEGIYDHFLSSLDAQEYLIQSCDVQDSLAGGLLVVVTGCVTLKNDETKMFTQS FFLAPQEESFFVLNDVFRFFSDEEAVKDHADETSEPEAVKDHADETSEPEAVKDHADE TSDPEAVKDHADETSDPLPTNLEPVPVQEIPSVPSEESKQKANSEKFSPQDLAEGFLD KYYDILLISPNLVHRFYKDSSKVSWESRDGVMSDVTVMESMYEHFSPRLDAKECDLLS SNVQGSCDTGISIQVVGRMTMNDDEIRHFSQSFFLAPQEKGYFVSNDVFRFLKDEEIT KIDADETSDPLRTNFEPSPDQEMTMVSSLDPKQEPNTNNPAIPVTETSSSAVQNNALE ETSIYVGNLRMRAKVEELEEAFKRFGIIKPDGVRIVNNDRIKKCYGFIEFESPISAQN AIQASSIKIGKKRVTIETINKTSDDEFHQGRMDSCQ" gene 24565975..24567609 /locus_tag="TCM_045450" /note="dbxref CacaoGD:Thecc1EG045450" mRNA join(24565975..24566203,24566547..24567609) /locus_tag="TCM_045450" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT2G03640.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045449t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(24566143..24566203,24566547..24567427) /locus_tag="TCM_045450" /note="paralog of Thecc1EG045449t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20054.1" /translation="MNCFLPFFVMYFQTFRSKNLIAKMATAAKVKAFVEEYYRIPRDI LILVFRFYKDSSKVSWLGEDGVMRNVTTMGAIYFHFLSLDAKKYDILSCYSQDSFDGG VLVLVIGCMTLKNDKTKMFKQSFFLAPQKEGFFVFNDVLMFFSDEETMNIHGGQTSDP LRTNLELISDQGIAMVPSLESNQEANWNNPKMSIIETSCYAVQNNAAYSSTVEDLDTS AFQGLNNLNRVDALEETSIFIKNLGKNTKVEELHEAFKRFGTIKPDGIYVKPAKEGRF FGFIEFESPISAQNAIQASFIKIRNRKIKIGERKRKN" mobile_element complement(24572467..24572633) /note="source:CACAO_Mutator_E1376_scaffold_6 1857 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 24573815..24575057 /note="source:CACAO_M_E4063_F12_scaffold_2 4907 6173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24574732..24575105 /note="source:CACAO_M_E49205_F4_scaffold_6 10054 10417" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24574769..24575541) /note="source:scaffold_2_CACTA_0248 9777 10549" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24575815..24575878) /note="source:scaffold_5_CACTA_0591 3955 4011" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24575829..24575900 /note="source:CACAO_M_E3659_F345_scaffold_1 1204 1274" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24579806..24580670 /locus_tag="TCM_045452" /note="dbxref CacaoGD:Thecc1EG045452" mRNA 24579806..24580670 /locus_tag="TCM_045452" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS 24580153..24580557 /locus_tag="TCM_045452" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20055.1" /translation="MIQLFLKWQSKIGITLTFKAIDFSCHHALGEVDEAFNTKKVQCP ANEGIGLVKLPPSMLQKDLIVLHIYDNQGPWPAGLHKSSPNDNADDLPPPPPFPWKQG KKQKSQSNHLVGKEEREAMCMEMEYGNLGKSC" gene 24581399..24583837 /locus_tag="TCM_045453" /note="dbxref CacaoGD:Thecc1EG045453" mRNA 24581399..24583837 /locus_tag="TCM_045453" /product="AZA-guanine resistant1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s08100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019735t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s08100.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6750t1" CDS 24581768..24583498 /locus_tag="TCM_045453" /note="paralog of Thecc1EG019735t1" /codon_start=1 /product="AZA-guanine resistant1" /protein_id="EOY20056.1" /db_xref="Phytozome:POPTR_0013s08100.1" /db_xref="TAIR:AT3G10960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRK7" /translation="MVMEPHPPPKNFLTRLNSAVANSRVGKRFKLSERNSTFTTELRA GTATFLTMAYILAVNASILADSGGPCSVSDCVPLCSDPSVPLSNCTGSTQRVVQPDVS CKFDPVNPGYASCLEKVRKDLIVATVASSLIGCVIMGAFANLPLALAPGMGTNAYFAY TVVGYHGSGNVPYKSALAAVFIEGLIFLFISAVGFRAKLAKLVPKPVRISSSAGIGLF LAFIGLQNNQGIGLVGYNPSTLVTLGGCPSWSRTSVAPVLTTANGTVSLLPGGTVSGD IFCLRDRMESPTLWLGIVGFVIIAYCLVKNIKGAMIYGIVFVTAVSWFRHTKVTAFPD TVAGDAAHEYFKKVVDIHLIESTAGALSFKTIGKGYFWEALVTFLYVDILDTTGTLYS MARFAGFTDENGDFEGQYFAFMSDAMSIVVGSLLGTSPVTAFIESSTGIREGGRTGLT ALTVAGYFFLAFFFTPLLASIPAWAVGPPLILVGVLMMRAVVEIEWDDMRQAIPAFVT LILMPLTYSIAYGLIGGIGTYIVLNIWDWATDFLAKHGAIERSGVGVNGAHEQAREDG SVKAVELDRV" mobile_element 24587455..24587782 /note="source:CACAO_Mutator_E1998_scaffold_9 10582 10876" /mobile_element_type="transposon:TIR/Mutator" mobile_element 24587783..24589425 /note="source:CACAO_M_E57337_F76_scaffold_9 3887 5565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24589427..24589859 /note="source:CACAO_Mutator_E1998_scaffold_9 10591 11016" /mobile_element_type="transposon:TIR/Mutator" mobile_element 24589977..24590157 /note="source:CACAO_Mutator_E1998_scaffold_9 11071 11248" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(24592206..24597805) /note="source:INTACT1604F_F75_scaffold_10-int 1 5600" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(24601588..24603311) /locus_tag="TCM_045455" /note="dbxref CacaoGD:Thecc1EG045455" mRNA complement(join(24601588..24601847,24602096..24603311)) /locus_tag="TCM_045455" /product="Crooked neck protein / cell cycle protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016407t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s10340.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(24601733..24601847,24602096..24603144)) /locus_tag="TCM_045455" /note="paralog of Thecc1EG016407t1" /codon_start=1 /product="Crooked neck protein / cell cycle protein, putative" /protein_id="EOY20057.1" /db_xref="Phytozome:POPTR_0001s10340.1" /db_xref="TAIR:AT5G41770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ37" /translation="MDPSPEVKLPQVTAEQILLESREQQEAEIRAPKQKLTNSIELLE YHLLKFEDEISRESWNIDAWINYAKWRESLKDFMGARIVWHRAVKVNDQNCSLWLNYA KFEMKNKFFNHARDVWDRAVTVLPHVDVLWYKYIHMEEMLGNIGRARQIFERWMSWMP DQRVWLSYIDFELRCNEVVYARLIYERFVECHPKVGAWITYGKFEMRNGEIVREMNVY EQATEKLADEEDVEPLFIVFAEFEEQCKETERGRRIYKSALDHIPKGRAENLYGKFVA FEKQYGDKEGIEDAIGGKNPLNYDGGAVRYVTHHLLVPVAWIHHVTVLLQLQLFGFLN QAIRDCGSKTTGHATHYEEYIDYVFPEEKQSMNLKILEAAFKWKKHRISSDED" mobile_element complement(24603739..24604523) /note="source:CACAO_Mutator_E39_scaffold_1 3298 4103" /mobile_element_type="transposon:TIR/Mutator" mobile_element 24604426..24605779 /note="source:CACAO_on_E193_scaffold_6 58 1423" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(24605789..24606661) /note="source:CACAO_M_E43348_F5_scaffold_5 4984 5803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24606711..24606809) /note="source:CACAO_M_E43348_F5_scaffold_5 4895 4991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24606813..24607863) /note="source:CACAO_M_E43348_F5_scaffold_5 3688 4735" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24607451..24609248 /locus_tag="TCM_045457" /note="dbxref CacaoGD:Thecc1EG045457" mRNA join(24607451..24608243,24608352..24609248) /locus_tag="TCM_045457" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039371t1" /inference="similar to AA sequence:frave:gene02471" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.41 coverage" mobile_element complement(24607849..24614986) /note="source:CACAO_on_S_E176_scaffold_5 170 7006" /mobile_element_type="transposon:TIR/Mutator" CDS join(24607931..24608243,24608352..24608596) /locus_tag="TCM_045457" /note="dbxref frave:gene02471; paralog of Thecc1EG039371t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20058.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AN76" /translation="MFHKVHTCTVYGLQGRFVTASAKIIGELMSHKLQANGVALRSKD IIDEIRVQWGLECLYGKAWQAKKYAERLVFGPSEESFQLLPSYFYMLEQKNLDTVTIM ATGKFKSVLFVAVCKDANECIYPVAFGIGHVEEEDSRTWFLRKLHDAVGCPENTMFIS DQHLDIKKIIQNVYPEAHHSLCGYH" mobile_element 24614987..24615192 /note="source:scaffold_1_CACTA_0009 12947 13141" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24615193..24615367) /note="source:CACAO_on_S_E176_scaffold_5 1 169" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(24615403..24615678) /note="source:scaffold_1_CACTA_0009 3951 4220" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24615676..24622304 /note="source:INTACT91_F141_scaffold_4-int 3513 15252" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24622318..24623215 /note="source:CACAO_M_E33977_F20_scaffold_4 15580 16541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24623448..24624919) /note="source:scaffold_2_CACTA_0253 7504 8995" /mobile_element_type="transposon:TIR/CACTA" gene 24625930..24627243 /locus_tag="TCM_045459" /note="dbxref CacaoGD:Thecc1EG045459" mRNA join(24625930..24626829,24626906..24627076, 24627200..24627243) /locus_tag="TCM_045459" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8594t2" CDS join(24626209..24626829,24626906..24627067) /locus_tag="TCM_045459" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20059.1" /translation="MEGKMELESEDRLSNLPVERKQKMEIESADRLSNLPEAVLLDII SFLNTKDAVRTSILSTNWTSVWKDLKSMHLQGFTIKKENFDPKIFTSCPRLQSLKLND ILLEDGIVMFRIASITLKSLELSFVRSESRGCQVIIDAPNLTSFSYEGYPSLTFDILK HSLEEVYFDLNWNPNVDNKNLDYQCLMIMLDGIRQTKSLTLSLSTIKILSEFHALLQE SEIPYTDLKILNLRIEGECENFDIPRNVLYHFCKSSTSLEIC" gene 24627586..24632213 /locus_tag="TCM_045460" /note="dbxref CacaoGD:Thecc1EG045460" mRNA join(24627586..24628034,24628358..24628418, 24628500..24628505,24629977..24630046,24631645..24631705, 24631835..24632213) /locus_tag="TCM_045460" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6943t1" CDS join(24627993..24628034,24628358..24628418, 24628500..24628505,24629977..24630046,24631645..24631705, 24631835..24631972) /locus_tag="TCM_045460" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20060.1" /translation="MTLARDNPPTGVLMMGAKLTTTTGLSGIGAIMLTWAYRTVVEPL LHPEGAKPGECVSFSGIDGKPEDVLNPGRQLEKTTLYCAFLNLGIRSMGLVSVITVSF LFSLLYLASGFKFLEYPHFLIFN" gene complement(24632402..24636730) /locus_tag="TCM_045461" /note="dbxref CacaoGD:Thecc1EG045461" mRNA complement(join(24632402..24632531,24634474..24635141, 24635357..24635471,24635987..24636073,24636199..24636299, 24636447..24636730)) /locus_tag="TCM_045461" /product="NAD-dependent glycerol-3-phosphate dehydrogenase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045473t1" /inference="similar to AA sequence:TAIR:AT2G40690.1" /note="quality class is medium, express is strong, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8210t8_C1" mobile_element complement(24633533..24633576) /note="source:scaffold_5_CACTA_0610 5704 5747" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(24635019..24635141,24635357..24635471, 24635987..24636073,24636199..24636284)) /locus_tag="TCM_045461" /note="paralog of Thecc1EG045473t1" /codon_start=1 /product="NAD-dependent glycerol-3-phosphate dehydrogenase family protein, putative" /protein_id="EOY20061.1" /db_xref="TAIR:AT2G40690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949Q0" /translation="MTVFQHCIGINSGCNLFGIECNDYENLRLSGPLGRSLLDGPVFG GPRPKLMFLNGLKRTYFPERKLPENVIATADARTALLGADYCLHAVPMQAFQFSATFF VGIAEHVDPGLPFISVSKDLELNTLKMMPASIEN" mobile_element complement(24635382..24635414) /note="source:INTACT1604F_F75_scaffold_10-int 5568 5600" /mobile_element_type="retrotransposon:LTR/Copia" gene 24637738..24642519 /locus_tag="TCM_045462" /note="dbxref CacaoGD:Thecc1EG045462" mRNA join(24637738..24638170,24638395..24638525, 24638619..24638676,24638794..24638928,24639000..24639602, 24639679..24639822,24639891..24640019,24641160..24641201, 24641708..24642519) /locus_tag="TCM_045462" /product="RING/U-box and TRAF-like domains" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030888001" /inference="similar to AA sequence:Phytozome:GSVIVT01030888001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6965t2" CDS join(24638117..24638170,24638395..24638525, 24638619..24638676,24638794..24638928,24639000..24639602, 24639679..24639822,24639891..24640019,24641160..24641201, 24641708..24642331) /locus_tag="TCM_045462" /codon_start=1 /product="RING/U-box and TRAF-like domains" /protein_id="EOY20062.1" /db_xref="Phytozome:GSVIVT01030888001" /db_xref="TAIR:AT5G37930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H365" /translation="MSLTDREAVDCSAIPAFQGPNEGDETIMSINDEENVVSEGQRKK KKKKQVSTRPACSWVYFSREFIKEYSASHPESSGLKAATKAASDAWKLMSTEEKEKYT RRAREVWDSYLSTAPARIPKPRKQTKLVTRCSPGRLFNVLQRLTPEQKAAVKSMGFGS LLGLRCRTLRRSLCLWLLERFNTVRHSLEICGERIPLSPRDVEHVMGLAACGKDVVNS GPDDLIADLRQSYNATNRGISVRLLEEWLAAPEAGEDFKRSFILYALGTLLSPTARLD VSPSFLHFLINMDVVHQYNWGKFLLDRLVREVSRFRQGKQRAVGGCLLFLQLFYYESI SIEGAGSSAPMVVPCLSSWGEEEITEREKRERELGGYGRGEVTSKDSFLGMELLEYRV QVEGLSGGKISTSIEHNPIFEQEGTQADEEQMNSDFSMEEANVANFPKSKSMMCGDME VIVEPGRTPCRNKEYGCSETVDYTRNDDHEENCVFTPCACPLPNCNFIGSSEQLSLHF SSKHWDSGRRFRYKIPLPVTLGMNEQFLVLQAEEDGILFILYKGVESIGNMIMITCIA PSSSKEKFLYDVVSGKGIRSLRLKSLTENFPGRVEGFPPMDFLLIPFRFLGPSGELNL EVCIWNSKQLASNCP" gene 24642891..24646138 /locus_tag="TCM_045464" /note="dbxref CacaoGD:Thecc1EG045464" mRNA join(24642891..24643212,24644467..24644672, 24644945..24645115,24645216..24645427,24645866..24646138) /locus_tag="TCM_045464" /product="Dual specificity protein phosphatase (DsPTP1) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s07510.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s07510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00733t00002" mRNA join(24642894..24643212,24644467..24644672, 24644945..24645115,24645216..24645638) /locus_tag="TCM_045464" /product="Dual specificity protein phosphatase (DsPTP1) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s07510.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s07510.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00733t00001; alternateUTRof:Thecc1EG045464t1; inference alignment:Newbler:10:TSA:cgbaL_g00733t00002" CDS join(24642930..24643212,24644467..24644672, 24644945..24645115,24645216..24645419) /locus_tag="TCM_045464" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Dual specificity protein phosphatase (DsPTP1) family protein isoform 1" /protein_id="EOY20063.1" /db_xref="Phytozome:POPTR_0019s07510.1" /db_xref="TAIR:AT3G10940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRK5" /translation="MSGINSTSCFSSVFQNLHETELLSAKKKSRLSFMLPRYQFNGGC TGIFCKVSESGIGGNPTNSKVSVRSKNRTEEYNTAMKRMMRNPYEYHHDLGMNYTLIT DNLIVGSQPQKPEDIDHLKQEEKVAYILNLQQDKDIEYWGIDLQSIIKRCRQLGIRHM RRPARDFDPDSLRNELPRAVSSLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCN MNLNTAYDALTSKRPCGPNKIAIRGATYDLAKNDPWKEPFESLPEHAFEGIADWERKL IQDGVRSLRGT" CDS join(24642930..24643212,24644467..24644672, 24644945..24645115,24645216..24645419) /locus_tag="TCM_045464" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Dual specificity protein phosphatase (DsPTP1) family protein isoform 1" /protein_id="EOY20064.1" /db_xref="Phytozome:POPTR_0019s07510.1" /db_xref="TAIR:AT3G10940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRK5" /translation="MSGINSTSCFSSVFQNLHETELLSAKKKSRLSFMLPRYQFNGGC TGIFCKVSESGIGGNPTNSKVSVRSKNRTEEYNTAMKRMMRNPYEYHHDLGMNYTLIT DNLIVGSQPQKPEDIDHLKQEEKVAYILNLQQDKDIEYWGIDLQSIIKRCRQLGIRHM RRPARDFDPDSLRNELPRAVSSLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCN MNLNTAYDALTSKRPCGPNKIAIRGATYDLAKNDPWKEPFESLPEHAFEGIADWERKL IQDGVRSLRGT" gene complement(24646143..24652736) /locus_tag="TCM_045465" /note="dbxref CacaoGD:Thecc1EG045465" mRNA complement(join(24646143..24647069,24647512..24647628, 24648034..24648114,24648353..24648484,24648664..24648777, 24649453..24649666,24650246..24650348,24650445..24650541, 24650616..24650684,24650779..24650901,24651017..24651115, 24652274..24652438,24652532..24652736)) /locus_tag="TCM_045465" /product="TLC ATP/ADP transporter" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032704001" /inference="similar to AA sequence:Phytozome:GSVIVT01032704001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6985t2" CDS complement(join(24646983..24647069,24647512..24647628, 24648034..24648114,24648353..24648484,24648664..24648777, 24649453..24649666,24650246..24650348,24650445..24650541, 24650616..24650684,24650779..24650901,24651017..24651115, 24652274..24652438,24652532..24652648)) /locus_tag="TCM_045465" /codon_start=1 /product="TLC ATP/ADP transporter" /protein_id="EOY20065.1" /db_xref="Phytozome:GSVIVT01032704001" /db_xref="TAIR:AT5G05310.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JZA0" /translation="MKMIELIGRRRLDAFISIFVTVHPHEIPALLHSSSCFFFVLCAY FVVLPLRDEGAISLGLANLPGLFVGSLLLTLIAAPVSTLIFSLPNLSKVKALVLIHRF FSVSLVVFFILWHTSSTESMRSQSKDSVAFSTELKVKIDQASPVDSIGWGNHGWFYVS VRIGLFLWVSLLNLITISSTWARVIDVMDNESGSRLFGFIGAGATLGQLFGSLFATGM AWLGSFLLLFAAILMELAAQSSKGISKDIAHLPEELSPIRKADLDQQKDADDEQTASA VKVSSPKLTTSRVEPQLWAILDGLRLILSSTYLLHVSLFLWLSAVVSSFFYFQKVNVI AMTVASSVGRRRLFAQINSFIAVFILTGQLTLTGRILTVAGVTIALCCTPFVAFSNLV AVAIWPTWKVVALSETLRKVVNYVVTKPGRELLFTVVSEDEKYKAKICIDVIVQRLGD ATAAGIYKLLFSILNGRISTVSLYALPVCLLWIVTAFYLGHRQTQLAKLQIGSSS" mobile_element 24653544..24653878 /note="source:CACAO_M_E11871_F88_scaffold_2 5130 5462" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24653580..24658935) /note="source:CACAO_M_S_E119872_F88_scaffold_10 1 5356" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24659812..24660232 /note="source:INTACT537_F22_scaffold_2-int 8384 8788" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24661478..24662165) /locus_tag="TCM_045467" /note="dbxref CacaoGD:Thecc1EG045467" mRNA complement(join(24661478..24661912,24662007..24662165)) /locus_tag="TCM_045467" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(24661615..24661912,24662007..24662152)) /locus_tag="TCM_045467" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20066.1" /translation="MTSFTTACMLLYCVKQLLLDNNTSIAKLILPETNLYSLPLNYYI YIALRDLRRVVCSPVMLEYLATHCKRIPKMKLFGFLEETEASLLAANFPLLQHLDTSS CALLVDGLSVILERHGNLIGLDTRHFYCVASCSIYLPSVCPRAEE" gene 24662897..24671496 /locus_tag="TCM_045468" /note="dbxref CacaoGD:Thecc1EG045468" mRNA join(24662897..24663194,24664302..24665235, 24665702..24665797,24666058..24666194,24667068..24667244, 24670785..24671496) /locus_tag="TCM_045468" /product="Lung seven transmembrane receptor family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene21363" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019692t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032664001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b043854t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17362t1" mRNA join(24662897..24663194,24664302..24665235, 24665702..24665797,24666058..24666194,24667068..24668789) /locus_tag="TCM_045468" /product="Lung seven transmembrane receptor family protein, expressed isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21363" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019692t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032664001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17362t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17362t1" CDS join(24662908..24663194,24664302..24665235, 24665702..24665797,24666058..24666194,24667068..24667244, 24670785..24670848) /locus_tag="TCM_045468" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019692t1" /codon_start=1 /product="Lung seven transmembrane receptor family protein isoform 2" /protein_id="EOY20068.1" /db_xref="Phytozome:GSVIVT01032664001" /db_xref="TAIR:AT1G61670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10LU2" /translation="MGNNREYICFSKDLIGNGCFQKLTFVVIIYWSCFLISQVGGSIH EYQNESFIRRSNSFFFHGGSEGLYASKLHIDPDRKGSSSSEENHSNGKSFIRFESIIF RRTKESAEKKNEMQQKTGLVEAIIVDVKDREKIGGSYLHSSAICCTPDLSKDRSCKLG EVIIHQDPNNPNSPQRIQTFFEGKNEEASMVLQTVEINRTGMYYLYFMFCDPELTGML ISGRTVWRNPEGYLPGKMAPLMTYFGLMSLAYLVLGVVWFLWFVQYWKDIIQLHYHIT AVVGLGMCEMALWYFEFANFNATGSRPMGITLWAVTFSAIKKTVSRLLLLVVSMGYGV VRPTLGGITFKVLLLGLTYFVFSEALGLVENLGNIDDLTGKARIFLVLPVSLLDACFI VWIFSALSQTLEKLQIRRSMAKFALYRKFTNSLAISVLLSIAWIGYELYFNAADPLSE LWQRAWVIPAFWNLLAFVLLIVICILWAPSNNPTRYAYSEETGDDLEEEGISLTGTSV ILAGESATKPERKERKVSTADLFGLVEELEEDKREYDMTRHIIRNKTSCTLALFPP" CDS join(24662908..24663194,24664302..24665235, 24665702..24665797,24666058..24666194,24667068..24667245) /locus_tag="TCM_045468" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019692t1" /codon_start=1 /product="Lung seven transmembrane receptor family protein, expressed isoform 1" /protein_id="EOY20067.1" /db_xref="Phytozome:GSVIVT01032664001" /db_xref="TAIR:AT1G61670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10LU2" /translation="MGNNREYICFSKDLIGNGCFQKLTFVVIIYWSCFLISQVGGSIH EYQNESFIRRSNSFFFHGGSEGLYASKLHIDPDRKGSSSSEENHSNGKSFIRFESIIF RRTKESAEKKNEMQQKTGLVEAIIVDVKDREKIGGSYLHSSAICCTPDLSKDRSCKLG EVIIHQDPNNPNSPQRIQTFFEGKNEEASMVLQTVEINRTGMYYLYFMFCDPELTGML ISGRTVWRNPEGYLPGKMAPLMTYFGLMSLAYLVLGVVWFLWFVQYWKDIIQLHYHIT AVVGLGMCEMALWYFEFANFNATGSRPMGITLWAVTFSAIKKTVSRLLLLVVSMGYGV VRPTLGGITFKVLLLGLTYFVFSEALGLVENLGNIDDLTGKARIFLVLPVSLLDACFI VWIFSALSQTLEKLQIRRSMAKFALYRKFTNSLAISVLLSIAWIGYELYFNAADPLSE LWQRAWVIPAFWNLLAFVLLIVICILWAPSNNPTRYAYSEETGDDLEEEGISLTGTSV ILAGESATKPERKERKVSTADLFGLVEELEEDKRE" gene complement(24667176..24676947) /locus_tag="TCM_045471" /note="dbxref CacaoGD:Thecc1EG045471" mRNA complement(join(24667176..24667244,24670785..24671472, 24672559..24672805,24673303..24673607,24674249..24674322, 24674413..24674756,24674849..24674957,24675469..24675612, 24675969..24676078,24676484..24676556,24676662..24676811)) /locus_tag="TCM_045471" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015034001" /inference="similar to AA sequence:Phytozome:POPTR_0019s08710.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc619t1_C2; alternateUTRof:Thecc1EG045471t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6993t3" gene complement(24667380..24670707) /locus_tag="TCM_045470" /note="dbxref CacaoGD:Thecc1EG045470" mRNA complement(join(24667380..24670354,24670585..24670707)) /locus_tag="TCM_045470" /product="Pentatricopeptide repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:29729.m002372" /inference="similar to AA sequence:ricco:29729.m002372" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(24667785..24670334) /locus_tag="TCM_045470" /note="dbxref ricco:29729.m002372" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative" /protein_id="EOY20071.1" /db_xref="TAIR:AT2G40720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S4F5" /translation="MRPTLRLSRQLSNYESSHLSPALLNSSIKAFIQQGQYTKALQLY SVSPLTATKFTFPSLLKASTFVSDLTYGKTLHSTIIQLGLQFDPFITTSLINMYVKCG LFSYAVNVFEKMVEREVFVEDVTFWNSLLDGFVKFGLIKKGLAHFYRMQAFGVLPDAY SLSILLGVLGYKEGKQIHGYIVRNVFKSDPFLETALIDTYLSCSRIMEAWCVFDYLED KSNVVVWNVMIGGFFENGLWEWSLKLYSLVKCENVKLVSESFTSTLSACGYGDVVGFG RQVHCDLIKLGFENNHFVYTSLLTMYGKCQFVEDAEKVFYQVLDKGIEVWNAMISTFA CNGYSYAAFEVYNKMRYNVINPDSFTMSNVLSCSSMIGIYNVGRSVHAELVKRPIESS ASVQSALVTMYCKCGSVYDGNSVLGAMREKDVVAWGSMISGFCQNRKFREALDYFRGM DANGVRPDSDIMSSVISACTGLENVDLGCMIHGYVVKSGLEADVFVATSLVDMYSKFG FPDMAENLFFHMPHKNLVAWNTIMSCYCRNSLPDQSIKLFSTIVQHGFYPDSVSITTV LAAVSSIAALLNGKIIHGYLIRLEVQSDIQLENALIDMYIKCGFLKYAEYIFQNMSQK DVVSWNCMLAGYGSHGDCLRALSLFDEMKNCGITPDDVTFLSLISSCNHAGLVDEGQY IFQSMTVEHGIEPKMEHYVNIVDLLGRAGRLEDAYNFVKTMPMEPNRSVWLSLLCACR AYSNVELGELAAHNLLKVEPSRGSNYVQLLHLYGEAGLQDKAANIRATMKERGLKKNP GCSWIELRNKVDVFFSGDSSSLRTMEIYEILHSLGRNMEKKEGDYEIDAFL" mRNA complement(join(24670757..24671472,24672559..24672805, 24673303..24673607,24674249..24674322,24674413..24674756, 24674849..24674957,24675469..24675612,24675969..24676078, 24676484..24676556,24676662..24676947)) /locus_tag="TCM_045471" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015034001" /inference="similar to AA sequence:Phytozome:POPTR_0019s08710.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6993t3" CDS complement(join(24671218..24671472,24672559..24672805, 24673303..24673607,24674249..24674322,24674413..24674756, 24674849..24674957,24675469..24675612,24675969..24676078, 24676484..24676556,24676662..24676800)) /locus_tag="TCM_045471" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY20069.1" /db_xref="Phytozome:POPTR_0019s08710.1" /db_xref="TAIR:AT2G40700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XJN0" /translation="MKKTQKSNKEKDEKMSKKSNSKGSEIFASCSFSSLGLHSTLCDQ LRERLGFEAPTLVQAQSIPVILSGRHVLVNAETGSGKTIAYLAPIVHHLQGYSPRIER SHGTFALVLVPTRELCMQVYEILQKLLHRFHWIVPGYVMGGENRNKEKARLRKGISIL IATPGRLLDHLKHTSSFVHTSLRWIIFDEADRILELGFGKDIEEILDLLGSKANESAH KGKSSEFQRQNLLLSATLNEKVNHLAKISLENPVMIGLDNTKMQNPSLDQTRSLGSDE DEELDNSSKLVSSSSGDYKLPAQLVQRYVKVPCGSRLAVLLSILKHLFERETSQKIVV FFSTCDAVDLHYSLLSEFQWSPYSQFEAELKQKFLKCKTFRLHGNMKQEDRRTTFSAF KTEKSALLVSTDVAARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFL QPIEVDYLQDLEKHGVSLTEYPLLKILDSFPLHGQTHRVKKFVLLESHPWVVSLQKEL ESYILSEPKIKKLAKNAFCSWVRAYTAHRGDLKRIFMVKKLHLGHVAKSFALKEQPSL VGKSFQNQSKKRKRDQRQMGLHKKRKVASKTGI" CDS complement(join(24671218..24671472,24672559..24672805, 24673303..24673607,24674249..24674322,24674413..24674756, 24674849..24674957,24675469..24675612,24675969..24676078, 24676484..24676556,24676662..24676800)) /locus_tag="TCM_045471" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY20070.1" /db_xref="Phytozome:POPTR_0019s08710.1" /db_xref="TAIR:AT2G40700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XJN0" /translation="MKKTQKSNKEKDEKMSKKSNSKGSEIFASCSFSSLGLHSTLCDQ LRERLGFEAPTLVQAQSIPVILSGRHVLVNAETGSGKTIAYLAPIVHHLQGYSPRIER SHGTFALVLVPTRELCMQVYEILQKLLHRFHWIVPGYVMGGENRNKEKARLRKGISIL IATPGRLLDHLKHTSSFVHTSLRWIIFDEADRILELGFGKDIEEILDLLGSKANESAH KGKSSEFQRQNLLLSATLNEKVNHLAKISLENPVMIGLDNTKMQNPSLDQTRSLGSDE DEELDNSSKLVSSSSGDYKLPAQLVQRYVKVPCGSRLAVLLSILKHLFERETSQKIVV FFSTCDAVDLHYSLLSEFQWSPYSQFEAELKQKFLKCKTFRLHGNMKQEDRRTTFSAF KTEKSALLVSTDVAARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFL QPIEVDYLQDLEKHGVSLTEYPLLKILDSFPLHGQTHRVKKFVLLESHPWVVSLQKEL ESYILSEPKIKKLAKNAFCSWVRAYTAHRGDLKRIFMVKKLHLGHVAKSFALKEQPSL VGKSFQNQSKKRKRDQRQMGLHKKRKVASKTGI" gene 24676990..24683613 /locus_tag="TCM_045472" /note="dbxref CacaoGD:Thecc1EG045472" mRNA join(24676990..24677459,24677817..24678054, 24683586..24683613) /locus_tag="TCM_045472" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(24677401..24677459,24677817..24678051) /locus_tag="TCM_045472" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20072.1" /translation="MMVKDPNPTMSKSKFASPYSIALPRGSATTIATMRRRKTTSGAT SSMVAKTMLKFYADDGPRLEISANAVLVMSISFIAFVGILFITGKLYFIRKEA" mobile_element complement(24680156..24683129) /note="source:CACAO_M_E69999_F325_scaffold_10 1 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24681555..24687180 /locus_tag="TCM_045473" /note="dbxref CacaoGD:Thecc1EG045473" mRNA join(24681555..24681644,24683586..24684159, 24684690..24684826,24684948..24685053,24685277..24685478, 24685584..24685671,24685995..24686142,24686374..24686523, 24686598..24686747,24686887..24687180) /locus_tag="TCM_045473" /product="NAD-dependent glycerol-3-phosphate dehydrogenase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g38310.1" /inference="similar to AA sequence:Phytozome:Glyma02g38310.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7008t2" mobile_element 24683194..24683532 /note="source:INTACT135F_F90_scaffold_2-int 13657 14010" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(24683746..24684159,24684690..24684826, 24684948..24685053,24685277..24685478,24685584..24685671, 24685995..24686142,24686374..24686523,24686598..24686747, 24686887..24686901) /locus_tag="TCM_045473" /codon_start=1 /product="NAD-dependent glycerol-3-phosphate dehydrogenase family protein" /protein_id="EOY20073.1" /db_xref="Phytozome:Glyma02g38310.1" /db_xref="TAIR:AT2G40690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC70" /translation="MMAQCTPCNTDKTKNVNTCFFLSLFSAQTTKMAPLYEPVFLLNL NPSFTSKNPCSIHFLNLPKLPSKPLVIATGCAATPSPSPSPSLPQDSDQNPPQASPDR TRDRRKVVRLAWEKLVRWSRSWRSKAKTDVLERTNKVVVLGGGSFGTAMAAHVANRKT QMEVSMLVRDPAVCQSINENHCNCKYFPEHKLPENVIAATDARTALLGADYCLHAVPV QFSATFLEGIAEYVDPGLPFISLSKGLELNTLRMMSQIIPQALKNPRQPFIALSGPSF ALELMNKLPTAMVVASKDKKLANAVQQLLASSHLRISTSSDVTGVEIAGALKNVLAIA AGIVEGMNLGNNSMAALVAQGCSEIRWLATKMGAKPTTITGLSGTGDIMLTCFVNLSR NRTVGVRLGSGEELDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDSE LTPKKAVLELMRLPQVEEV" gene 24688035..24694687 /locus_tag="TCM_045474" /note="dbxref CacaoGD:Thecc1EG045474" mRNA join(24688035..24689296,24690545..24690704, 24690815..24691139) /locus_tag="TCM_045474" /product="F-box/RNI-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s00420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045482t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10520.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00961t00003" CDS join(24688340..24689296,24690545..24690704, 24690815..24690864) /locus_tag="TCM_045474" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG045482t1" /codon_start=1 /product="F-box/RNI-like superfamily protein isoform 1" /protein_id="EOY20074.1" /db_xref="Phytozome:POPTR_0011s10520.1" /translation="MEDFSDMGQGNGKKKNKDRISELTDELLLKIMSFLNTKHAVQTC VLSKRWKKLWESLRYLDFNYNTFPFKRKIVHLDHLELEMKMCSFSNFISQVLFRRDSY DLVKVCVQSPNYNPHASVLAGLICYAVKHNVQHLTFQLNFRGGLPFSLPQSLYTCQSL TSLELKRNDWMAIELPTLLACRALKSLHLSHFSMAGPNFEPTAFSGCPNLETLQLFDI VPESENLCINADKLRSLVLSFALLIDGKVEIYAPRLTTFKYSGILPMVCLTDNLASVD DVYFDIRTPRFIHNEEEYVIRLINTFKEFPHAKSLTLSTSTIKVLSKFPSLVVQNRLP FANLKHLNIKIKKWQRKRFEMPACILNYFLNRSSVLKICMDSEIASYDSSEDSD" mRNA join(24688581..24689296,24690545..24690700, 24694353..24694355,24694463..24694687) /locus_tag="TCM_045474" /product="F-box/RNI-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s00420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045482t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10520.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00189t00001; inference alignment:Newbler:10:TSA:cgbaB_g00961t00003" CDS join(24688586..24689296,24690545..24690700, 24694353..24694355,24694463..24694537) /locus_tag="TCM_045474" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG045482t1" /codon_start=1 /product="F-box/RNI-like superfamily protein isoform 2" /protein_id="EOY20075.1" /db_xref="Phytozome:POPTR_0011s10520.1" /translation="MKMCSFSNFISQVLFRRDSYDLVKVCVQSPNYNPHASVLAGLIC YAVKHNVQHLTFQLNFRGGLPFSLPQSLYTCQSLTSLELKRNDWMAIELPTLLACRAL KSLHLSHFSMAGPNFEPTAFSGCPNLETLQLFDIVPESENLCINADKLRSLVLSFALL IDGKVEIYAPRLTTFKYSGILPMVCLTDNLASVDDVYFDIRTPRFIHNEEEYVIRLIN TFKEFPHAKSLTLSTSTIKVLSKFPSLVVQNRLPFANLKHLNIKIKKWQRKRFEMPAC ILNYFLNRSSVLKYAWITKWQAMRVLRIAINLGFVNSF" gene 24691907..24695087 /locus_tag="TCM_045475" /note="dbxref CacaoGD:Thecc1EG045475" mRNA join(24691907..24692933,24694196..24694355, 24694463..24694687,24694865..24695087) /locus_tag="TCM_045475" /product="F-box/RNI-like superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045482t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10520.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6776t1" CDS join(24691995..24692933,24694196..24694355, 24694463..24694512) /locus_tag="TCM_045475" /note="paralog of Thecc1EG045482t1" /codon_start=1 /product="F-box/RNI-like superfamily protein" /protein_id="EOY20076.1" /db_xref="Phytozome:POPTR_0011s10520.1" /db_xref="TAIR:AT5G22670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N7R4" /translation="MSLTSEKRNKKNEDRMGKLPDDVLLKIMSFLNTKQAVQTCVLSK RWKSLWQSLPNLDFNFDTFPFQQEIDDEDEEELEMKMCSFSNFISQVLFRRCPTDLLK VCVQSLSYDRHASVLAGLICYAVKHNVQHVTFQLIGGCSFLMPKSLYTCHSLTSLGLK GNVWMPIKPPTLLACPALKYLRLSRISTAGPNFEPTAFSGCPNLETLELLDIRPGSKN LCINAVNLRSLVLSFALDFDCKVEIYAPRLTTFKDSGYVPMMCLRENLAFLDDVYFDI KASIFILNEEEHVIRLINAFNEFRHAKSLTLSTSTVKVLTKFPSMVDRNLLPFANLKH LNIKVKKWQSKGFEIPACILNYFLNRSTVLKICMDNQMAGYESPEDSD" gene 24695491..24699414 /locus_tag="TCM_045476" /note="dbxref CacaoGD:Thecc1EG045476" mRNA join(24695491..24696512,24697682..24697841, 24697949..24698509,24699062..24699414) /locus_tag="TCM_045476" /product="F-box/RNI-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s10530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045485t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10530.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6780t2" CDS join(24695565..24696512,24697682..24697841, 24697949..24697998) /locus_tag="TCM_045476" /note="paralog of Thecc1EG045485t1" /codon_start=1 /product="F-box/RNI-like superfamily protein" /protein_id="EOY20077.1" /db_xref="Phytozome:POPTR_0011s10530.1" /translation="MLLTSEKRNKKNEDRMGKLPDAVLLKIMSFLNTKQAVQTCVLSK RWKSLWQSLPNLDFNFDTFPFQQEIDDEDEERVEMKMASFSNFISQVLFRRCPTDLVK VCVQSHIYDPRCFLVDGLICYAVKHNVQQLTVHPRSDYPYLFPESFWTCQSLTALELK ANDVTLSAIELPKLLACPALKSLHLSGFSPFGPNFETTVFSGCPNLETLELFDILAVG SEGLCIDALKLTSLVLSFALIGDGKVEIYAPQLTTFKYSGIAPTMWRTDSLANLDDVY FDIKTPRFKHNERDYVLCLINILNKFRHAKSLTLSTAAVKVLTKFPSLVGRNRLRFTN LKHLKIKFDKWPCKRLEMPACMLNCFLNSSTILKICMDSPMAVFESPEDSD" gene 24698465..24702388 /locus_tag="TCM_045477" /note="dbxref CacaoGD:Thecc1EG045477" mRNA join(24698465..24698509,24699705..24699764, 24699917..24700021,24700156..24700196,24700271..24700313, 24700439..24700657,24701852..24702002,24702100..24702388) /locus_tag="TCM_045477" /product="F-box/RNI-like superfamily protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045483t1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02762t00002" mRNA join(24699701..24699764,24699917..24700021, 24700156..24700196,24700271..24700313,24700439..24700657, 24701852..24702002,24702112..24702208) /locus_tag="TCM_045477" /product="F-box/RNI-like superfamily protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045483t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6902t3; inference alignment:Newbler:10:TSA:cgbaL_g02762t00002" CDS join(24699750..24699764,24699917..24700021, 24700156..24700196,24700271..24700313,24700439..24700657, 24701852..24702002,24702100..24702161) /locus_tag="TCM_045477" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG045483t1" /codon_start=1 /product="F-box/RNI-like superfamily protein isoform 1" /protein_id="EOY20078.1" /translation="MKTGWEIDDEDEEELEMKMCSFSKFISQVLFRRCPTDLVKLLDL SIIDITRVESSLRLDQTLNQRLSQVEIYAPRLTTFKYSGTPPIVCLTDHPDSVDDVYF DLKTPPRFKRSEKEYGLRLINILNEFRHAKSLTLSLSVEVLTKCCSLRDQDLRPFANL KIKVDKWLFMKPKSFERILDSLLSCSATMKLYDFSGMDSQMAGHESPVGSD" CDS join(24699750..24699764,24699917..24700021, 24700156..24700196,24700271..24700313,24700439..24700657, 24701852..24702002,24702112..24702161) /locus_tag="TCM_045477" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG045483t1" /codon_start=1 /product="F-box/RNI-like superfamily protein isoform 2" /protein_id="EOY20079.1" /translation="MKTGWEIDDEDEEELEMKMCSFSKFISQVLFRRCPTDLVKLLDL SIIDITRVESSLRLDQTLNQRLSQVEIYAPRLTTFKYSGTPPIVCLTDHPDSVDDVYF DLKTPPRFKRSEKEYGLRLINILNEFRHAKSLTLSLSVEVLTKCCSLRDQDLRPFANL KIKVDKWLFMKPKSFERILDSLLSCSATMKLCMDSQMAGHESPVGSD" gene 24700731..24701854 /locus_tag="TCM_045478" /note="dbxref CacaoGD:Thecc1EG045478" mRNA 24700731..24701854 /locus_tag="TCM_045478" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09970t00001" CDS 24700927..24701139 /locus_tag="TCM_045478" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20080.1" /translation="MIQSSILFFVFFRKTKCYNIIPFHHAKRITELMLTHLFYIDSFT KFMFPITTYKCLVLLNYRVKEFKDKN" gene complement(24702337..24708663) /locus_tag="TCM_045479" /note="dbxref CacaoGD:Thecc1EG045479" mRNA complement(join(24702337..24703001,24703094..24703211, 24703295..24703387,24703975..24704500,24708582..24708663)) /locus_tag="TCM_045479" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014810t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(24704004..24704303) /locus_tag="TCM_045479" /note="paralog of Thecc1EG014810t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20081.1" /translation="MLSDPCRVICGKTNKKERHNRGWSRQPPRFIKLNVDGSALGKPG PAGIGDALRDHEGFIRGISSHPIGPEDSNYAELIAIKKGISFFLSTPCLAVTLSL" mobile_element complement(24710788..24711414) /note="source:CACAO_M_S_E66378_F33_scaffold_5 1923 2544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24711415..24714182 /note="source:CACAO_M_E42190_F87_scaffold_5 1 2779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24714186..24716111) /note="source:scaffold_5_CACTA_0607 922 2845" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24715941..24716133 /note="source:CACAO_Mariner_E176_scaffold_6 1 190" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 24717551..24717604 /note="source:CACAO_M_E44848_F172_scaffold_6 1912 1965" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24734127..24735476) /locus_tag="TCM_045481" /note="dbxref CacaoGD:Thecc1EG045481" mRNA complement(24734127..24735476) /locus_tag="TCM_045481" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS complement(24735060..24735353) /locus_tag="TCM_045481" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20082.1" /translation="MEGELLDIVFNSIAKQSVYEKTVRVIDMGLDTNLDKVSGATPER TWLMKLLKEHIFISTSSLSSSSVSCWKGKVSKLKSRFGRDCQRGFHLLDKTQV" gene 24735637..24743755 /locus_tag="TCM_045482" /note="dbxref CacaoGD:Thecc1EG045482" mRNA join(24735637..24735890,24736843..24737334, 24741082..24742146,24743260..24743755) /locus_tag="TCM_045482" /product="F-box/RNI-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g01100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045474t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10520.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS join(24741169..24742146,24743260..24743424) /locus_tag="TCM_045482" /note="paralog of Thecc1EG045474t1" /codon_start=1 /product="F-box/RNI-like superfamily protein" /protein_id="EOY20083.1" /db_xref="Phytozome:POPTR_0011s10520.1" /translation="MEDFSDMLLSTLGRRNRNNEDRISKLPDDLLFKIMSFLNTKQAV QTCVLSKRWKPLWQSLPYLDFNYNTSPFKQKTVQLDDADREQVGIEMLSLSNFISQVL FRRCPTDLVKVCVQSVNYDQHASVLAGLMCYAVKHNVQHLTFQLHRGGGGRPFLLPQS LYTCQSLTSLELKGNDWMAVKLPTLLACPALKSLHLSHFSMAGPNFEPTAFSGCPNLQ TLQLFDIWIGSENLCINAVNLRSLLLSFVLHGEGKVEICAPRLTTFKYSGIPPIVCLK ENLAFLDDVYFDIKAYSLKRNEEESVIRLINTFKEFRQAKSLTLSTSTVKILAKFPSL LDQNRLPFANLKHLKIKVKKWQSKRFEMPACILNCFLNNSTILKIC" gene 24744005..24747846 /locus_tag="TCM_045483" /note="dbxref CacaoGD:Thecc1EG045483" mRNA join(24744005..24744249,24745815..24746780, 24747418..24747577,24747689..24747846) /locus_tag="TCM_045483" /product="F-box/RNI-like superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045485t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10530.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS join(24744223..24744249,24745815..24746780, 24747418..24747577,24747689..24747717) /locus_tag="TCM_045483" /note="paralog of Thecc1EG045485t1" /codon_start=1 /product="F-box/RNI-like superfamily protein" /protein_id="EOY20084.1" /db_xref="Phytozome:POPTR_0011s10530.1" /translation="MRCMVSKGQMEDFSDMLLFTLGRRNMTIEDRISKLPDGLLLKIM SFLNTKQAVQTCVLSKRWKPLWQSLPNLVFDFDTFPFQQEIDDEDQEEVEMKMCSFSN FIRQVLFRRCPTDLVKVCVQSHIYDPHCFLVDGLLCYAVKHNVQQLTFHSRSDCQYLF PESFWTCQSLTSLELKGSDWMPMKLPTLLACPALKSLHLSHFSTAGPNFEPTAFSGCL NLETLQLFDILAVGSEGLCIDALKLTSLVLSFAFLGDGKVEIYAPRLTTFKYSGTPPI VCLTDHLASVDNVYFDIKTPPRFRHSEGEYVLRSINTLSEFRHAKSLTLSSSTVQVLT KFPSLLDQNPLSFANLKHMKIKVKKWERDRFEMPACILNYFFNNSAILRIWMDSFEDS Q" mobile_element complement(24748166..24748804) /note="source:CACAO_M_E50311_F328_scaffold_7 5822 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24749107..24749359) /note="source:CACAO_M_E50311_F328_scaffold_7 5575 5867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24749442..24751709) /note="source:CACAO_M_E50311_F328_scaffold_7 3291 5579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24753117..24755166) /note="source:CACAO_M_E57346_F74_scaffold_9 2176 4148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24754633..24755465 /note="source:INTACT674_F296_scaffold_6-int 5885 6719" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24755017..24759862 /locus_tag="TCM_045485" /note="dbxref CacaoGD:Thecc1EG045485" mRNA join(24755017..24755523,24756787..24757749, 24759348..24759507,24759618..24759862) /locus_tag="TCM_045485" /product="F-box/RNI-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g01100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045488t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10520.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" mobile_element complement(24755423..24755640) /note="source:INTACT345_F202_scaffold_1-int 257 407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24755503..24756036 /note="source:INTACT726_F314_scaffold_5-int 13389 13899" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24756705..24776187 /locus_tag="TCM_045486" /note="dbxref CacaoGD:Thecc1EG045486" mRNA join(24756705..24757749,24759348..24759507, 24760713..24760864,24763839..24764087,24764165..24764800, 24769226..24769579,24770780..24770939,24771516..24771592, 24773573..24774316,24774954..24775113,24775224..24776187) /locus_tag="TCM_045486" /product="F-box/RNI-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g01100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045483t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10530.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS join(24756787..24757749,24759348..24759507, 24759618..24759646) /locus_tag="TCM_045485" /note="paralog of Thecc1EG045488t1" /codon_start=1 /product="F-box/RNI-like superfamily protein" /protein_id="EOY20085.1" /db_xref="Phytozome:POPTR_0011s10520.1" /translation="MEDFSDVLLLTLGRRNMTVEDRISKLPDDLLLKIMSLLNTKQAV QTCVLSKRWKPLWQSLPNLDFDFDTFPFQQEIDDEDKEEVEMKMCSFSNFISQVLLRR CPTDLVKVCVQSHIYDPHCFLVDGLLCYAVKHNVQQLTFHSRSDCQYLFPESFWTCQS LTSLELKGSDWMPMKLPTLLACLALKSLHLSHFSTAGPNFEPTAFSGCPNLETLQLFD ILAVGSEGLCIDALKLTSLVLSFASLCHGKVEIYAPRLTTFKYSGIPPIVCLTDHLAS VDDVYFDIKTPGFKRNEEESVLRLIKTLNEFRHAKSLTLSSSTVQVLTKFPSLVGQNQ FPFANLKHLKIKVKKWQSKRFGMPACILNYFLNNSTVLKICMDSFEDNE" CDS join(24760730..24760864,24763839..24764087, 24764165..24764800,24769226..24769579,24770780..24770939, 24771516..24771592,24773573..24774316,24774954..24775113, 24775224..24775252) /locus_tag="TCM_045486" /note="paralog of Thecc1EG045483t1" /codon_start=1 /product="F-box/RNI-like superfamily protein" /protein_id="EOY20086.1" /db_xref="Phytozome:POPTR_0011s10530.1" /translation="MFDYNEVQSQEWNIVNSAGTMGSTTPSPTTQQPQKQLLASPTNT HMEDFSDMLLLTLGRRSMTVEDRISKLPDDLLLKIMSLLNTKQAVQTCVLSKRWKPLW QSLPNLDFNFDTFPFQQETDDEDKEEVCVQSHIYDPHCFLVDGLLCYAVKHNVQQLTF HSRSDCQYLFPESFWTCQSLTSIELKGSDWMPMKLPTLLACPALKSLHLSHFSAAGPN FEPTAFSGCPNLETLQLFDILAVGSEGLCIDALKLTSLVLSFASLRHGKVEIYAPRLT TFKYSGIPPIVCLTDHLASVDDVYFDIKTLGFKRNEEEYVLRLINTLNEFRHAKSLTL SSSTVQRFSQVAPNLQTLQLFDIWIGSENLCINAVNLRSLLLSFVLHGEGKVEICAPR LTTFKYSGIPPIVSSKENLAFLDDVYFDIKAYSLKRNEEESVIRLINTFKEFRQAKSL TLSTSTVKILAKFPSLLDQNRLPFANLKHLKIKVKKWQSKRFEMPACIPNCFLNNSTI LKIYMYHGILRHGFTLHGHVYLATLKSNQEIDDEDQEEVEMKMCSFSNFIRQVLFRRC PTDLVKVCVQSHIYDPHCFLVDGLLCYAVKHNVQQLTFHSRSDCQYLFPESFWTCQSL TSLELKGSDWIPMKLPTLLACPALKSLHLSHFSTAGPNFEPKAFSGCLNLETLQLFDI LAVGSEGLCIDALKLTSLVLSFAFLGDGKVEIYAPRLTTFKYSGTPPIVCLTDHLASV DNVYFDIKTPPRFRHSEGEYVLRSINTLSEFRHPKSLTLSSSTVQVLTKFPSLLDQNP LSFANLKHMKIKVKKWERDRFEMPACILNYFFNNSAILRIWMDSFEDSQ" gene 24777758..24780290 /locus_tag="TCM_045487" /note="dbxref CacaoGD:Thecc1EG045487" mRNA join(24777758..24778135,24778197..24778811, 24779864..24779961,24780134..24780290) /locus_tag="TCM_045487" /product="F-box/RNI-like superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045483t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10520.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS join(24778362..24778811,24779864..24779961, 24780134..24780143) /locus_tag="TCM_045487" /note="paralog of Thecc1EG045483t1" /codon_start=1 /product="F-box/RNI-like superfamily protein" /protein_id="EOY20087.1" /db_xref="Phytozome:POPTR_0011s10520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N7R4" /translation="MPMKLPTLLACPALKSLHLSHFSTGGPNFEPATFSGCPNLETMQ LFDILTVGSEGLCIDADNLRSLVLSFAFLGEGKVEIYAPRLTTFKYSGTPPIVCLTDN LASVDYVYFDIKTPKFRHNEEEYVLRLINTLNEFRHAKSLTLSSSTVQVLTKVPSLLD QNGLPFANLKHLKIKVKKWQSKRHG" mobile_element 24782066..24783382 /note="source:scaffold_10_CACTA_0130 108 1440" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24783399..24783669) /note="source:CACAO_M_E53135_F19_scaffold_8 2338 2608" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24791313..24795431 /locus_tag="TCM_045488" /note="dbxref CacaoGD:Thecc1EG045488" mRNA join(24791313..24792520,24793638..24793797, 24793908..24794109,24795033..24795431) /locus_tag="TCM_045488" /product="F-box/RNI-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s00420.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045485t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10520.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS join(24791558..24792520,24793638..24793797, 24793908..24793936) /locus_tag="TCM_045488" /note="paralog of Thecc1EG045485t1" /codon_start=1 /product="F-box/RNI-like superfamily protein" /protein_id="EOY20088.1" /db_xref="Phytozome:POPTR_0011s10520.1" /translation="MEDFSDMLLFTLGRRNMTVEDRISKLPDDLLLKIMSLLNTKQAV QTCVLSKRWKPLWQSLPNLDFDFDTFPFQQEIDDEDKEEVEMKMCSFSNFISQVLFRR CPTDLVKVCVQSHIYDPHCFLVDGLICYAVKHNVQQLTFHSRSDCQYILPESFWTCQS LTSLELKGSDWMPMKLPTLLACPALKSLHLSHFFAAGPNFEPTAFSGCPNLETMQLFD ILAVGSEGLCIDALKLTSLVFSFASLRHSKVEIYAPQLTTFKYSGIPPIVCLTDHLAS VDDVYFDMKTPGFKRNEEESVLLLIKTINEFRHAKSLTLSSSTVQVLTKFQSLLDQNL LPFANLKHLKIKAKKWESKRFEMPACILNYFLNNSTVLKICMDSYEDTE" gene complement(24796917..24799069) /locus_tag="TCM_045489" /note="dbxref CacaoGD:Thecc1EG045489" mRNA complement(join(24796917..24797180,24797329..24797399, 24797485..24797562,24797645..24797724,24797814..24798000, 24798149..24798236,24798673..24798730,24798966..24799069)) /locus_tag="TCM_045489" /product="Two-component response regulator ARR17" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032667001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024355t1" /inference="similar to AA sequence:ricco:29729.m002374" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08863t00001" CDS complement(join(24797084..24797180,24797329..24797399, 24797485..24797562,24797645..24797724,24797814..24798000, 24798149..24798236,24798673..24798730,24798966..24799020)) /locus_tag="TCM_045489" /note="dbxref ricco:29729.m002374; paralog of Thecc1EG024355t1" /codon_start=1 /product="Two-component response regulator ARR17" /protein_id="EOY20089.1" /db_xref="TAIR:AT3G56380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82798" /translation="MNGQSQFVLIVMEWTMIDEADPDSLVIRLDLFPIALIWAPPSSS PPTFSFPVVFSINTVSHYIHTSLPGILPCSSSDYCLARRFQRMAGGGCSKDTAVDFGD QPHVLAVDDNLIDRKLVEKLLKNSSCKVTTAENGLRALEYLGLGNDQRSAMEGTVSKV NLIITDYCMPGMTGYELLKKIKESSVLKEVPVVIMSSENSPTRISQCLEEGAQMFMLK PLKQSDVKQLKCHLMKCRS" gene complement(24799607..24807965) /locus_tag="TCM_045490" /note="dbxref CacaoGD:Thecc1EG045490" mRNA complement(join(24799607..24799961,24801226..24801738, 24802003..24802066,24802341..24802397,24802515..24802606, 24803424..24803492,24803628..24803718,24803854..24804005, 24804436..24804552,24804855..24804920,24806138..24806203, 24806770..24806940,24807210..24807308,24807716..24807869)) /locus_tag="TCM_045490" /product="OB-fold nucleic acid binding domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032669001" /inference="similar to AA sequence:Phytozome:GSVIVT01032669001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12339t00001" mRNA complement(join(24801108..24801738,24802003..24802066, 24802515..24802606,24803424..24803492,24803628..24803718, 24803854..24804005,24804855..24804920,24806138..24806203, 24806770..24806940,24807210..24807308,24807716..24807965)) /locus_tag="TCM_045490" /product="OB-fold nucleic acid binding domain-containing protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032669001" /inference="similar to AA sequence:Phytozome:GSVIVT01032669001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7996t10; inference alignment:Newbler:10:TSA:cgbaL_g12339t00001" mRNA complement(join(24801108..24801738,24801898..24802066, 24802515..24802606,24803424..24803492,24803628..24803718, 24803854..24804005,24804855..24804920,24806138..24806203, 24806770..24806940,24807210..24807308,24807716..24807965)) /locus_tag="TCM_045490" /product="OB-fold nucleic acid binding domain-containing protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032669001" /inference="similar to AA sequence:Phytozome:POPTR_0019s08680.2" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7652t4; inference alignment:Newbler:10:TSA:cgbaL_g12339t00001" mRNA complement(join(24801118..24801738,24802003..24802066, 24802515..24802606,24803424..24803492,24803628..24803718, 24803854..24804005,24804436..24804552,24804855..24804920, 24806138..24806203,24806770..24806940,24807210..24807308, 24807716..24807860)) /locus_tag="TCM_045490" /product="OB-fold nucleic acid binding domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032669001" /inference="similar to AA sequence:Phytozome:GSVIVT01032669001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6890t3; inference alignment:Newbler:10:TSA:cgbaL_g12339t00001" mRNA complement(join(24801423..24801738,24801898..24802066, 24802515..24802606,24803424..24803492,24803628..24803718, 24803854..24804005,24804436..24804552,24804855..24804920, 24806138..24806203,24806770..24806940,24807210..24807308, 24807716..24807965)) /locus_tag="TCM_045490" /product="OB-fold nucleic acid binding domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032669001" /inference="similar to AA sequence:Phytozome:GSVIVT01032669001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc106t1; inference alignment:Newbler:10:TSA:cgbaL_g12339t00001" CDS complement(join(24801634..24801738,24802003..24802066, 24802515..24802606,24803424..24803492,24803628..24803718, 24803854..24804005,24804855..24804920,24806138..24806203, 24806770..24806940,24807210..24807308,24807716..24807796)) /locus_tag="TCM_045490" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="OB-fold nucleic acid binding domain-containing protein isoform 7" /protein_id="EOY20096.1" /db_xref="Phytozome:GSVIVT01032669001" /db_xref="TAIR:AT2G40660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB0" /translation="MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYL NILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTP SEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEP QKKAKGDKEAVQEKKKAPETEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEI DVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTA VEPLLPPEGAKPGEHVSFSGIDGKPDDVLNPKKKQLEKITPHLFTDEKGVATFKGIPF MTSAGPCTSSIPKASIK" CDS complement(join(24801634..24801738,24802003..24802066, 24802515..24802606,24803424..24803492,24803628..24803718, 24803854..24804005,24804436..24804552,24804855..24804920, 24806138..24806203,24806770..24806940,24807210..24807308, 24807716..24807796)) /locus_tag="TCM_045490" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="OB-fold nucleic acid binding domain-containing protein isoform 3" /protein_id="EOY20092.1" /db_xref="Phytozome:GSVIVT01032669001" /db_xref="TAIR:AT2G40660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB0" /translation="MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYL NILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTP SEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEP QRAKAAAKPEIDLNAKKTVQSTKIADKSVAEVNAKKSDSGKKAKGDKEAVQEKKKAPE TEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCS PEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFS GIDGKPDDVLNPKKKQLEKITPHLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK" CDS complement(join(24801634..24801738,24802003..24802066, 24802341..24802397,24802515..24802606,24803424..24803492, 24803628..24803718,24803854..24804005,24804436..24804552, 24804855..24804920,24806138..24806203,24806770..24806940, 24807210..24807308,24807716..24807796)) /locus_tag="TCM_045490" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="OB-fold nucleic acid binding domain-containing protein isoform 1" /protein_id="EOY20090.1" /db_xref="Phytozome:GSVIVT01032669001" /db_xref="TAIR:AT2G40660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB0" /translation="MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYL NILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTP SEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEP QRAKAAAKPEIDLNAKKTVQSTKIADKSVAEVNAKKSDSGKKAKGDKEAVQEKKKAPE TEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCS PEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFS GHCCLSLLNVWSVLVQLILRIDGKPDDVLNPKKKQLEKITPHLFTDEKGVATFKGIPF MTSAGPCTSSIPKASIK" mRNA complement(join(24801710..24801738,24802003..24802606, 24803424..24803492,24803628..24803718,24803854..24804005, 24804436..24804552,24804855..24804920,24806138..24806203, 24806770..24806940,24807210..24807308,24807716..24807965)) /locus_tag="TCM_045490" /product="OB-fold nucleic acid binding domain-containing protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032669001" /inference="similar to AA sequence:Phytozome:GSVIVT01032669001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc110t8; inference alignment:Newbler:10:TSA:cgbaL_g12339t00001" CDS complement(join(24801922..24802066,24802515..24802606, 24803424..24803492,24803628..24803718,24803854..24804005, 24804855..24804920,24806138..24806203,24806770..24806940, 24807210..24807308,24807716..24807796)) /locus_tag="TCM_045490" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="OB-fold nucleic acid binding domain-containing protein isoform 6" /protein_id="EOY20095.1" /db_xref="Phytozome:POPTR_0019s08680.2" /db_xref="TAIR:AT2G40660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB0" /translation="MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYL NILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTP SEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEP QKKAKGDKEAVQEKKKAPETEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEI DVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTA VEPLLPPEGAKPGEHVSFSGIDGKPDDVLNPKKKQLEKITPVCFPCFGLRILFTSSFG FSVILFHGL" CDS complement(join(24801922..24802066,24802515..24802606, 24803424..24803492,24803628..24803718,24803854..24804005, 24804436..24804552,24804855..24804920,24806138..24806203, 24806770..24806940,24807210..24807308,24807716..24807796)) /locus_tag="TCM_045490" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="OB-fold nucleic acid binding domain-containing protein isoform 2" /protein_id="EOY20091.1" /db_xref="Phytozome:GSVIVT01032669001" /db_xref="TAIR:AT2G40660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB0" /translation="MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYL NILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTP SEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEP QRAKAAAKPEIDLNAKKTVQSTKIADKSVAEVNAKKSDSGKKAKGDKEAVQEKKKAPE TEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCS PEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFS GIDGKPDDVLNPKKKQLEKITPVCFPCFGLRILFTSSFGFSVILFHGL" mRNA complement(join(24802038..24802066,24802210..24802606, 24803424..24803492,24803628..24803718,24803854..24804005, 24804855..24804920,24806138..24806203,24806770..24806940, 24807210..24807308,24807716..24807965)) /locus_tag="TCM_045490" /product="OB-fold nucleic acid binding domain-containing protein isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032669001" /inference="similar to AA sequence:Phytozome:GSVIVT01032669001" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7652t1; inference alignment:Newbler:10:TSA:cgbaL_g12339t00001" mRNA complement(join(24802038..24802351,24802515..24802606, 24803424..24803492,24803628..24803718,24803854..24804005, 24804436..24804552,24804855..24804920,24806138..24806203, 24806770..24806940,24807210..24807308,24807716..24807965)) /locus_tag="TCM_045490" /product="OB-fold nucleic acid binding domain-containing protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032669001" /inference="similar to AA sequence:Phytozome:GSVIVT01032669001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc110t1; inference alignment:Newbler:10:TSA:cgbaL_g12339t00001" CDS complement(join(24802312..24802351,24802515..24802606, 24803424..24803492,24803628..24803718,24803854..24804005, 24804436..24804552,24804855..24804920,24806138..24806203, 24806770..24806940,24807210..24807308,24807716..24807796)) /locus_tag="TCM_045490" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="OB-fold nucleic acid binding domain-containing protein isoform 4" /protein_id="EOY20093.1" /db_xref="Phytozome:GSVIVT01032669001" /db_xref="TAIR:AT2G40660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB0" /translation="MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYL NILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTP SEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEP QRAKAAAKPEIDLNAKKTVQSTKIADKSVAEVNAKKSDSGKKAKGDKEAVQEKKKAPE TEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCS PEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFS GLFSGHQDTVGST" CDS complement(join(24802511..24802606,24803424..24803492, 24803628..24803718,24803854..24804005,24804855..24804920, 24806138..24806203,24806770..24806940,24807210..24807308, 24807716..24807796)) /locus_tag="TCM_045490" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="OB-fold nucleic acid binding domain-containing protein isoform 8" /protein_id="EOY20097.1" /db_xref="Phytozome:GSVIVT01032669001" /db_xref="TAIR:AT2G40660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB0" /translation="MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYL NILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTP SEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEP QKKAKGDKEAVQEKKKAPETEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEI DVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTA VEPLLPPEGAKPGEHVSFSG" CDS complement(join(24802511..24802606,24803424..24803492, 24803628..24803718,24803854..24804005,24804436..24804552, 24804855..24804920,24806138..24806203,24806770..24806940, 24807210..24807308,24807716..24807796)) /locus_tag="TCM_045490" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="OB-fold nucleic acid binding domain-containing protein isoform 5" /protein_id="EOY20094.1" /db_xref="Phytozome:GSVIVT01032669001" /db_xref="TAIR:AT2G40660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB0" /translation="MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYL NILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTP SEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEP QRAKAAAKPEIDLNAKKTVQSTKIADKSVAEVNAKKSDSGKKAKGDKEAVQEKKKAPE TEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCS PEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFS G" mobile_element complement(24806304..24806710) /note="source:CACAO_on_E736_scaffold_10 1 407" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 24813710..24818613 /locus_tag="TCM_045491" /note="dbxref CacaoGD:Thecc1EG045491" mRNA join(24813710..24815709,24816428..24818613) /locus_tag="TCM_045491" /product="Leucine-rich repeat protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047976" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019696t1" /inference="similar to AA sequence:ricco:29729.m002377" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc113t1" CDS join(24814211..24815709,24816428..24817877) /locus_tag="TCM_045491" /note="dbxref ricco:29729.m002377; paralog of Thecc1EG019696t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY20098.1" /db_xref="TAIR:AT3G56370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10LT7" /translation="MLNRKKKMKVKSLLTLLLFWLVLLVAASFPVRSLSPSLNDDVLG LIVFKADILDPNQKLSSWNEDDDTPCNWFGVKCNPRLNRVTELNLDGFSLSGRIGRGL LQLEFLRKLSLAKNNLTGSISPNLAKLESLRIIDLSENSLSGSIPDDFFKQCGSVRSI SLANNRFSGKIPGSLGSCATLAAINLSRNQFSGSLPGGIWALSGLRSLDLSENLLEGE IPKGIEALNNLRSINLGKNRFSGQVPDGVGSCLLLRSIDLSMNLLSGSVPQTMRKLSL CSYLNLSMNSFVGEVPEWIGEMKSLETLDFSMNKFSGQVPNSIGNLKFLKVLNFSANG LSGSLPASMGNNVNLLALDFSQNLMTGDLPAWIFKSGLNQVSLSEKKLGANVDNPIST SPGTSLQKIQVLDLSHNSFSGEITSDVGALSGLQLLNLSRNSIIGRIPGTVGELKALA VLDLSQNQLNGSIPMEIGGAYSLKDLRLNENFLEGKIPMSIENCTLLMSLIISQNNLS GTIPAAIGKLSNLQNVDLSVNGLVGTLPKQLANLPNLLSFNISHNNLQGELPAGGFFN TISPTAVSGNPSLCGSAVNKSCPAVLPKPIVLNPNSSSDSISGDLPPNVGHKRIILSI SALIAIGAAAVIVVGVIAITVLNLRVRSSTSRSAAALTLYAGDDFSRSPTTDANSGKL VMFSGEPDFSTGAHALLNKDCELGRGGFGAVYRTVLRDGRSVAIKKLTVSSLVKSQEE FEREVKKLGKIRHPNLVALEGYYWTPSLQLLIYEFVSGGSLYKHLHEGSGGNYLSWND RFSIILGTAKSLAHLHQSNIIHYNIKSSNVLIDGSGEPKVGDFGLARLLPMLDRYVLS SKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVVVLCDMV RGALEEGRVDECVDGRLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIR CPSEGQEDMG" gene 24819541..24823781 /locus_tag="TCM_045492" /note="dbxref CacaoGD:Thecc1EG045492" mRNA join(24819541..24820015,24820533..24823781) /locus_tag="TCM_045492" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30182.m000133" /inference="similar to AA sequence:Phytozome:POPTR_0010s18060.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8073t1" CDS 24821113..24823575 /locus_tag="TCM_045492" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY20099.1" /db_xref="Phytozome:POPTR_0010s18060.1" /db_xref="TAIR:AT1G79490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SAK0" /translation="MLHRLSRRFCPRNLYITLTLNPSSSRKVNSSKNGIDKCSITFSF FSSSMGIDQISPFVPLLKTPKFVTNPTFVRSYCSREWTEDIEYLDESGTVIYSGKGIR SVEPGLDDHVMVGGLKKPIMNASAVAKIVEVVKRWKWGPELESQLDKLQFMPKMIHVT QAMKVVKDSDASLSLFRWAKRQSWYVPSDECYDILFDGLNQSRDFDAIQSLFEEMVQE SSDNGVSLFTAYNRVIQYLAKAEKLEVSFCCFKKAQEYGCKIDTQTYNALMILFLNKS LPYKAFEIYESMQVAGCLLDGSTYELIIPSLAKSGRLDAAFKLFQEMKERKFQPSFSI FTSLVDSMGKAGRLDTSMKIYMEMQGSGLRPSATMFVSLIESYAKAGRLDTSLRLWNE MKNAGFRPNFGLYTMIIESHAKSGKLETATSIFKDMEKAGFLPTPSTYSCLLEMHAAS GQVDSAMKLYNSMINAGLRPGLSTYTALLTLLANKKLVDVAAKILLEMKSMGFSVDVS ASDVLMVYIKDGSIELALKWLRFMGSSGIRTNNFIVRQLFESCMKSGLYESAKPLLET YVSSAAKVDLVLYTSILAYLVRCQEEHNERHLMEILGATKHKAHAFMCGLFTGPEQRK QPVLSFVREFFQGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPK AIVFDQHIAWSLDVRNLSVGAALIAVAHTLHRFRKRMLYYGVIPRRIKLVTGPTLKIV VAQMLSSVESPFEVSKVVLRAPGDSVMDWFKKPIVQQFLLNEIPSRADILMHKLNILF PSSAPEIRSLSPPKPLIAGRAM" gene complement(24823898..24826144) /locus_tag="TCM_045493" /note="dbxref CacaoGD:Thecc1EG045493" mRNA complement(join(24823898..24824520,24824891..24825015, 24825638..24825767,24825849..24826144)) /locus_tag="TCM_045493" /product="Uncharacterized protein" /inference="similar to AA sequence:ricco:29729.m002378" /note="quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02311t00002" CDS complement(join(24824068..24824520,24824891..24825015, 24825638..24825767,24825849..24825953)) /locus_tag="TCM_045493" /note="dbxref ricco:29729.m002378" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20100.1" /translation="MDSKKILSTFFFFFFTLLTLSRQSRVPSPDSVSPLPSPSPSPLP SRSPAPGPSDAGCWLFSESCRNRSLAACIDPSSSASKELLLLVRNDGEKPLEVKVTVS HAKLLIKNIPIAAHKINKVNVSANLGGNSSILLDAGELKCVIRIRSPASSGGIFDYIP FAAHITRINGAYLLLLTGLIFGSTWACYKRGSRGQQGDGIPYQELEMGQQPDSPSANN VRTFGGWEQEWDGDWDELKSDTAIGHQMANGSGNILTSRPPKRDGETNTWDD" gene 24826439..24831620 /locus_tag="TCM_045494" /note="dbxref CacaoGD:Thecc1EG045494" mRNA join(24826439..24827121,24827210..24827519, 24828017..24828098,24829355..24829413,24829902..24829990, 24830194..24830289,24830972..24831409) /locus_tag="TCM_045494" /product="RING/U-box superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08650.1" /inference="similar to AA sequence:frave:gene21354" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6884t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6884t3" mRNA join(24826472..24827121,24827210..24827519, 24828017..24828098,24829356..24829413,24829902..24829990, 24830194..24830289,24830391..24830461,24830972..24831620) /locus_tag="TCM_045494" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08650.1" /inference="similar to AA sequence:frave:gene21354" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6884t3" CDS join(24826581..24827121,24827210..24827519, 24828017..24828098,24829356..24829413,24829902..24829990, 24830194..24830289,24830391..24830461,24830972..24831095) /locus_tag="TCM_045494" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene21354" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY20101.1" /db_xref="TAIR:AT5G05230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IQ60" /translation="MSSEEISLQNGLNVFQDDPLRAFNCGPTSTATTTTRPGPKTREL TGFIDDKMFSFPPSQPPDFRSSNIYAAAAAAAAASADRRDPPTHHHRNWGSSAGGGST HSGDDESDGDDVDDEEDEDDDVDDDEGGDGDETANNNNSSDININNHKNKINSGNETV NNAGTTNPEKMGNGKAKHSFVGESCRELVVKEGGSGLGQGVRESNSNNNYQNAVTIAD PDGDIYYTQYLQGGEGSGGSGGGGGGQKDIVVENGGSGCGFSGRKDVSFSSESGESLR AILSDPVTGTLMDDAMILPCGHSFGAAGIQHVLRLKVCYTCSHSVSEESVAPNLSLRA AVQAFRREEELQFYRSPKRRRDRFDQDKSNYGDSNMMDPPRGRGVQFPFAVTDRVIIK GNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPDDPSSKPMASK MGPNWL" CDS join(24826581..24827121,24827210..24827519, 24828017..24828098,24829355..24829413,24829902..24829965) /locus_tag="TCM_045494" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene21354" /codon_start=1 /product="RING/U-box superfamily protein isoform 2" /protein_id="EOY20102.1" /translation="MSSEEISLQNGLNVFQDDPLRAFNCGPTSTATTTTRPGPKTREL TGFIDDKMFSFPPSQPPDFRSSNIYAAAAAAAAASADRRDPPTHHHRNWGSSAGGGST HSGDDESDGDDVDDEEDEDDDVDDDEGGDGDETANNNNSSDININNHKNKINSGNETV NNAGTTNPEKMGNGKAKHSFVGESCRELVVKEGGSGLGQGVRESNSNNNYQNAVTIAD PDGDIYYTQYLQGGEGSGGSGGGGGGQKDIVVENGGSGCGFSGRKDVSFSSESGESLR AILSDPVTGTLMDDAMILPCGHSFGAAGIQHVLRLESLLHLFAFSIRGVGGSKSFSPS CGAGISSGRRVTVLPLT" mobile_element complement(24832751..24833159) /note="source:CACAO_MITE_S153_scaffold_6 2 407" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(24833062..24833841) /note="source:scaffold_4_CACTA_0511 12870 13661" /mobile_element_type="transposon:TIR/CACTA" gene 24834919..24838569 /locus_tag="TCM_045495" /note="dbxref CacaoGD:Thecc1EG045495" mRNA join(24834919..24835108,24836452..24837547, 24837683..24838569) /locus_tag="TCM_045495" /product="Cytochrome p450 79a2" /inference="alignment:exonerate- protein:2:TAIR:AT5G05260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045515t1" /inference="similar to AA sequence:TAIR:AT5G05260.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6790t1" CDS join(24836519..24837547,24837683..24838315) /locus_tag="TCM_045495" /note="paralog of Thecc1EG045515t1" /codon_start=1 /product="Cytochrome p450 79a2" /protein_id="EOY20103.1" /db_xref="TAIR:AT5G05260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HA56" /translation="MENTSSENVTFSLLSWGLLDFATSRLVSFHSTFLFVLLIISLSV VKAKGKASKRKSDQAPLPPGPTPWPIIGNLPEIWRKRPAFRWIHGLMKELHTDILCVR LASTHVVAVTSPAIAREFLKKNDSVFASRPVTMATEYSSRRFLTIAVVPWGDQWKKMR RVVTCEIVSASKLHSLLENRTEEADNLVRFIYNQCKSNGGDNSTASAVVNLRLAMRQY SGNVIRKMIFNRRYFGEGRKDGGPGYEEEEHVESLFTVLKHLYSFILSDYIPWLRSFD LEGHEKTVRKAMKIVNDYQDPLIDERVQEWREGKRTESEDLLDAFILAKDSNGKRALS IEEIKAQCAELMLATVDNPSNAVEWAMAEMINQPEILLKAVEEIDAVVGKERLVQEAD IPKLNYVKACAREGFRLHPIAPFNLPHVSTADATVAGYFIPKGSHVLLSRYGLGRNPK VWDDPLKFNPERHLKDGSMCVGLTETDLRFISFSTGRRGCMGVALGTAMTVMLLARLL QGFTWRVPPNEANIDLSEAKDDLFMAKPLHALGQPRLPAHLYPAN" mobile_element complement(24839486..24839577) /note="source:CACAO_M_S_E16386_F9_scaffold_2 2050 2142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24840580..24840649 /note="source:CACAO_M_E24018_F98_scaffold_4 2038 2095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24841262..24841686) /note="source:scaffold_5_CACTA_0614 2232 2646" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24841687..24841840 /note="source:INTACT164_F159_scaffold_7-int 4622 4775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24841842..24844999 /note="source:INTACT164_F159_scaffold_7-int 6125 9286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24845000..24845631) /note="source:CACAO_M_E34045_F265_scaffold_4 1101 1730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24846648..24848406) /note="source:scaffold_2_CACTA_0276 6398 8181" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24848398..24850380 /note="source:INTACT164_F159_scaffold_7-int 9290 10558" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24852073..24854192) /note="source:INTACT242_F12_scaffold_1-int 2460 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24854105..24854219 /note="source:CACAO_M_E13038_F22_scaffold_3 13343 13469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24854739..24854807 /note="source:CACAO_M_E48452_F5_scaffold_6 14288 14355" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24854861..24854992 /note="source:scaffold_7_CACTA_0789 11594 11725" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24857431..24859552) /note="source:INTACT242_F12_scaffold_1-int 2466 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24860272..24860403 /note="source:scaffold_7_CACTA_0789 11594 11725" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24860895..24861306 /note="source:CACAO_MITE_S153_scaffold_6 559 958" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(24861370..24861992) /note="source:scaffold_4_CACTA_0511 12870 13530" /mobile_element_type="transposon:TIR/CACTA" gene 24864488..24866501 /locus_tag="TCM_045498" /note="dbxref CacaoGD:Thecc1EG045498" mRNA join(24864488..24865687,24865823..24866501) /locus_tag="TCM_045498" /product="Cytochrome p450 79a2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032694001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045495t1" /inference="similar to AA sequence:TAIR:AT5G05260.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc1040t4" CDS join(24865061..24865687,24865823..24866455) /locus_tag="TCM_045498" /note="paralog of Thecc1EG045495t1" /codon_start=1 /product="Cytochrome p450 79a2" /protein_id="EOY20104.1" /db_xref="TAIR:AT5G05260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HA56" /translation="MATEYSSRRFLTIAVVPWGDQWKKMRRVVTCEIVSASKLHSLLE NRTEEADNLVRFIYNQCKSNGGDNSTASAVVNLRLAMRQYSGNVIRKMIFNRRYFGEG RKDGGPGYEEEEHVESLFTVLKHLYSFILSDYIPWLRSFDLEGHEKTVRKAMKIVNDY QDPLIDERVQEWREGKRTESEDLLDAFILAKDSNGKRALSIEEIKAQCAELMLATVDN PSNAVEWAMAEMINQPEILLKAVEEIDAVVGKERLVQEADIPKLNYVKACAREGFRLH PIAPFNLPHVSTADATVAGYFIPKGSHVLLSRYGLGRNPKVWDDPLKFNPERHLKDGS MCVGLTETDLRFISFSTGRRGCMGVALGTAMTVMLLARLLQGFNWRVPPNEANIDLSE AKDDLFMAKPLHALGQPRLPAHLYPAN" gene 24870828..24872492 /locus_tag="TCM_045499" /note="dbxref CacaoGD:Thecc1EG045499" mRNA join(24870828..24871609,24871781..24871975, 24872123..24872492) /locus_tag="TCM_045499" /product="Cytochrome p450 79a2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045515t1" /inference="similar to AA sequence:TAIR:AT5G05260.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS join(24871052..24871609,24871781..24871975, 24872123..24872278) /locus_tag="TCM_045499" /note="paralog of Thecc1EG045515t1" /codon_start=1 /product="Cytochrome p450 79a2, putative" /protein_id="EOY20105.1" /db_xref="TAIR:AT5G05260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HA56" /translation="MLLVIFLFVVKAKGKASKRKSNQAPFPPGPTPWPIIGNPPEIWR KRPAFRWIHGLMKEHHTDILCARLANSHVVAVTSPVIAPEFLKKNDSVFASRPVTMAT EYSSRRFLTIAVVPWGDQWKKMRKVVTCDIVSASKLRSLLENRIEEADNLVRFIYNQC KSNGNDNSTASAVVNLRLGMRQYSGNGHEKTVCKAMKIVSEYQDPLIDERVQEWREGK RTEPEDLLDAFILAKDSNGKPSLSIEEIRAQCAELMLATVDNPSNAVEWAMAEMINQL ETLLKAVEEIDSLVGKERLVLEADIP" mobile_element 24873831..24873992 /note="source:INTACT567_F258_scaffold_9-int 4849 5010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24873988..24877089 /note="source:INTACT567_F258_scaffold_9-int 5360 8490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24877108..24877249 /note="source:INTACT567_F258_scaffold_9-int 8673 8809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24877236..24877322) /note="source:CACAO_M_S_E84604_F20_scaffold_6 1710 1804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24879918..24879969 /note="source:CACAO_M_E33977_F20_scaffold_4 5590 5641" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24880934..24883643 /locus_tag="TCM_045501" /note="dbxref CacaoGD:Thecc1EG045501" mRNA join(24880934..24882002,24882083..24883643) /locus_tag="TCM_045501" /product="Cytochrome p450 79a2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032688001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045511t1" /inference="similar to AA sequence:TAIR:AT5G05260.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc2424t1" CDS join(24880980..24882002,24882083..24882724) /locus_tag="TCM_045501" /note="paralog of Thecc1EG045511t1" /codon_start=1 /product="Cytochrome p450 79a2" /protein_id="EOY20106.1" /db_xref="TAIR:AT5G05260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HA56" /translation="MDNSSTISFQTQLPWGSHDFAISTLVSFHSTLVLVLLFAPLVLV KLKSTTRKNYSNRAPLPPGPTPWPVIGNLPEIWKNKPAFRWIHGLMKQLDTDIACIRL ANIHVIPVTSPEIAREFLKKYDAVFASRPLTMATELASRGFLSTILVPWGDQWKKMRR VVTSNIMRPETLSWLLHKRTQEADNLVRFIYNQCVNPENDSSNGSVIDLRLAVRQYTG NVISRMMFNKRYFGKGKEDGGPGHEEEEHVESIFTVLIHLYSFALSDYAPWLRPLDLE GHEKIVSEAMRIVNGYHDPIIDERVQQWREGKKKEPEDLLDAFILAKDSDGKPALSVE EIKAQCFDLMLATVDNPANAAEWAMAEMINQPETLQKAIEEIDGVVGKDRLVQETDIP KLNFVKACAREAFRLHPMAPFNPPHVSNADAIVAGYFIPKGSHVLLSRVGLGRNPQVW DEPSKFKPERHFKDGSMEVNLTETELRFISFSTGRRGCIGVALGSEMTIMLFARLIQG FAWKVPPDEAKIDLSESEDNLFLAKPLHALAKPRLPAAVYDQLNYK" gene complement(24884104..24887142) /locus_tag="TCM_045502" /note="dbxref CacaoGD:Thecc1EG045502" mRNA complement(join(24884104..24884358,24884437..24884818, 24886365..24886599,24887044..24887142)) /locus_tag="TCM_045502" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045510t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(join(24884301..24884358,24884437..24884818, 24886365..24886599,24887044..24887061)) /locus_tag="TCM_045502" /note="paralog of Thecc1EG045510t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20107.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJN8" /translation="MCRIVKAIGFNSLWRKWIFECIFTLHVSVLINGLATTEFPTKGG LHQGNQLSLFLFIVAVEVLNLLLSKAEDLDFFQGISLFANGKPSPSGCGGVLRNFEGS LLGLFYGPLGYHDSNYAELMAILHALRLFSASQSIGAQLLVESNSKEALSWVSDVRQR PWKLWQIFNEIDYLSQTIGNVSYISVLREGNSFADSLGKLGLDRCSIFTALCSAFAAF LLLLCSANKVML" mobile_element 24884935..24885328 /note="source:INTACT349_F203_scaffold_6-int 2258 2652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24888786..24891978) /note="source:CACAO_M_E69996_F328_scaffold_10 1 3193" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24892014..24902928 /locus_tag="TCM_045503" /note="dbxref CacaoGD:Thecc1EG045503" mRNA join(24892014..24892057,24892579..24892799, 24894189..24894960,24895041..24896231,24902757..24902928) /locus_tag="TCM_045503" /product="Cytochrome p450 79a2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032688001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045511t1" /inference="similar to AA sequence:TAIR:AT5G05260.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" mobile_element 24892411..24892502 /note="source:CACAO_Mutator_E206_scaffold_1 7779 7886" /mobile_element_type="transposon:TIR/Mutator" CDS join(24892609..24892799,24894189..24894960, 24895041..24895682) /locus_tag="TCM_045503" /note="paralog of Thecc1EG045511t1" /codon_start=1 /product="Cytochrome p450 79a2" /protein_id="EOY20108.1" /db_xref="TAIR:AT5G05260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HA56" /translation="MRPRDVTMDISLSCNGIDCSIQAIFPKYPNSTKVRGIRIVQERI FLPLVDIVPLTVRGHSRIEVWIHGLMKQLDTDIACIRLANIHVIPVTSPEIAREFLKK YDAAFASRPVTMATEFASRGFLSTALVPWGDQWKKMRKVIASNIIKPARLSSLLHKRT QEADNLVRFIYNQCINPENDSSNGSVINLRLAVRQYTGNVIRKMMFNKRYFGQGKEDG GPGHEEEEHVESLFTVLKHLYSFILSDYVPWLRPLDLEGHEKIVSEAVRIVNGYHDPI IDERVQQWREGKKKEAEDLLDAFILAKDLDGKPALSVEEIKAQCTELMLATVDNPANA AEWAMAEMINQPETLQKAIEEIDGVVGKDRLVQETDIPKLNYVKACAREAFRLHPIAP FNLPHVSNTDVIVAGYFIPKGSHVLLSRVGLGRNSQVWDEPLKFKPERHLKDGSIEVD LTETELRFISFSTGRRGCMGVALGSEMTIMLLARLIQGFAWKAQPDEAKIDLSESEDD LFLAKPLHALAKPRLSAAVYAQLNYK" mobile_element 24894080..24894137 /note="source:CACAO_M_E33977_F20_scaffold_4 16429 16486" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24899128..24900121 /locus_tag="TCM_045504" /note="dbxref CacaoGD:Thecc1EG045504" mRNA 24899128..24900121 /locus_tag="TCM_045504" /product="Cytochrome p450 79a2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045503t1" /inference="similar to AA sequence:frave:gene02395" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 24899571..24899915 /locus_tag="TCM_045504" /note="dbxref frave:gene02395; paralog of Thecc1EG045503t1" /codon_start=1 /product="Cytochrome p450 79a2, putative" /protein_id="EOY20109.1" /db_xref="TAIR:AT5G05260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HA56" /translation="MATMLASCGFLLTALVPWGDQWKKMRKGVASNIIKPARLSWLLH KRTQEADNLVRFIYNQCINPENGSSNGSVINLRLAVRQCIGNDIRKMMFNKRYFGNGK EDGGLDTKKKNT" gene complement(24902930..24906086) /locus_tag="TCM_045505" /note="dbxref CacaoGD:Thecc1EG045505" mRNA complement(join(24902930..24903546,24903627..24903727, 24904303..24904346,24904454..24904540,24904853..24905222, 24905951..24906086)) /locus_tag="TCM_045505" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045512t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(join(24903268..24903546,24903627..24903727, 24904303..24904346,24904454..24904540,24904853..24904995)) /locus_tag="TCM_045505" /note="paralog of Thecc1EG045512t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20110.1" /translation="MVGSLPFTYLGFPMGANPRNVSSWDLVINKVRQGLALWQRKYLS FGERFHWSPTTSHSNKMPLVWKCITQLPTNDKGFLCLFSLALNKEARALAPSLHGSLC CKKVLNSVLTDLLEISLVPLDVELMAILHAFRLFSASQYIGAQLLFESDSKVALSWVS DVRQRPWKLWQIFNEIDYLSQTIGNVSYTNFLREGNSFADSLDKLGLDRCSMFTALW" mobile_element 24903762..24904163 /note="source:INTACT349_F203_scaffold_6-int 2248 2652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24905122..24905253 /note="source:INTACT405F_F91_scaffold_4-int 14977 15105" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24905329..24905543 /note="source:INTACT405F_F91_scaffold_4-int 15076 15289" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24906804..24908333 /note="source:INTACT405F_F91_scaffold_4-int 16583 18091" /mobile_element_type="retrotransposon:LTR/Copia" gene 24916528..24920641 /locus_tag="TCM_045507" /note="dbxref CacaoGD:Thecc1EG045507" mRNA join(24916528..24916719,24917670..24917762, 24917866..24917940,24918355..24918644,24918740..24919200, 24919520..24920641) /locus_tag="TCM_045507" /product="Cytochrome p450 79a2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045515t1" /inference="similar to AA sequence:TAIR:AT5G05260.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(24916717..24916719,24917670..24917762, 24917866..24917940,24918355..24918644,24918740..24919200, 24919520..24919980) /locus_tag="TCM_045507" /note="paralog of Thecc1EG045515t1" /codon_start=1 /product="Cytochrome p450 79a2, putative" /protein_id="EOY20111.1" /db_xref="TAIR:AT5G05260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HA56" /translation="MTCQFFSTFVKMYYESNVLCRDVITLIFGASNDPIKSTLSDAKF VRNNSSYDENLGKAKGKASKRKRDQAPLSLGPTPWPIIGNHPKIWRKRPAFRWIHGLM KGHHTDILCVCLANSHVIAVTSPVIAREFLKKNDSVFASRPVTMATEYSIRRTEEAGS LVRFIYNQSTASAVVNLRLAMRQYSGNIIRKMIFNRRYFGEGRKDGGPGYEEVEHVES LFTVLQHLYSFILSDYIPWLRSFDLEGNEKTVRKAMKTVNEYQDPLIDERVQEWREGK RTEPEDLLDCFILSKDSIGKPALSIEEIKAQSCAREGFRLHPIAPFNLPHVSTADATV AGYFIPKGSHVLLSLYGPGRNPRVWDDPLKFNPERHLKVGSMRVDLTETGLRFISFNT GRRGCMGVALGTAMTMMLLARLLQGFTWRVLPNEANIDLSGAKDAIFMAKPLHALGRP RLPAHLYPAN" gene 24920688..24932776 /locus_tag="TCM_045509" /note="dbxref CacaoGD:Thecc1EG045509" mRNA join(24920688..24920708,24926305..24926712, 24931156..24932357,24932438..24932776) /locus_tag="TCM_045509" /product="Cytochrome p450 79a2" /inference="alignment:exonerate- protein:2:ricco:30167.m000871" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045511t1" /inference="similar to AA sequence:TAIR:AT5G05260.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" mobile_element 24921370..24924775 /note="source:INTACT567_F258_scaffold_9-int 4849 8434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24924770..24925518) /note="source:CACAO_M_S_E84604_F20_scaffold_6 919 1731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24924853..24925522 /note="source:INTACT1798F_F56_scaffold_10-int 14392 15051" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24925525..24925706 /note="source:INTACT539_F11_scaffold_2-int 708 902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24928819..24928961) /note="source:CACAO_MITE_S193_scaffold_8 28 169" /mobile_element_type="transposon:TIR/MITE" mobile_element 24930836..24930899 /note="source:scaffold_2_CACTA_0252 8801 8857" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24930921..24931042 /note="source:CACAO_M_E33977_F20_scaffold_4 16429 16550" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(24931335..24932357,24932438..24932611) /locus_tag="TCM_045509" /note="paralog of Thecc1EG045511t1" /codon_start=1 /product="Cytochrome p450 79a2" /protein_id="EOY20112.1" /db_xref="TAIR:AT5G05260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HA56" /translation="MDNSSTISFQTQLPWGSHDFAISTLVSFHSTLVLVLLFAPLVLV KLKSTTKNNYTNQALLPPGPTPWPVIGNLPEIWKNKPAFRWIHGLMKQLDTDIACIRL ANIHVIPVTSPEIAREFLKKYDAVFASRPVTMATELASRGFLSTALVPWGDQWKKMRK VIASNILKPARLSSLLHKRTQEADNLVRFIYNQCINPENDSSNGSVINLRLAVRQYTG NVIRKMMFHKRYFGQGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKEPEDLLDAFILAKDLDGKPALSVE EIKAQCTELMLATVDNPANAAEWAMAEMINQPETLQKAIEEMDGVVGYWKAQEDDPRF CMEGAA" gene complement(24933240..24936323) /locus_tag="TCM_045510" /note="dbxref CacaoGD:Thecc1EG045510" mRNA complement(join(24933240..24933884,24934572..24934658, 24935920..24936323)) /locus_tag="TCM_045510" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045502t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(join(24933580..24933884,24934572..24934608)) /locus_tag="TCM_045510" /note="paralog of Thecc1EG045502t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20113.1" /translation="MHGLMALGIFPIGYHDSNYAELMAILHALRLFSASQYIGAQLLF ESDSKVALSWVSDVRQRPWKLWQIFNEIDYLSQTIGNVSYINVLREGNSFADSLGKLG LDRCSMFTALW" mobile_element 24934081..24934469 /note="source:CACAO_M_S_E6161_F17_scaffold_2 1 389" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24934224..24945988 /locus_tag="TCM_045511" /note="dbxref CacaoGD:Thecc1EG045511" mRNA join(24934224..24934368,24939231..24939377, 24942070..24943144,24943225..24943901,24945647..24945988) /locus_tag="TCM_045511" /product="Cytochrome p450 79a2" /inference="alignment:exonerate- protein:2:TAIR:AT5G05260.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045501t1" /inference="similar to AA sequence:TAIR:AT5G05260.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg6813t1" mobile_element 24935435..24935503 /note="source:INTACT405F_F91_scaffold_4-int 14977 15039" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24936521..24936794 /note="source:CACAO_M_E57346_F74_scaffold_9 2424 2712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24937039..24938552 /note="source:INTACT405F_F91_scaffold_4-int 16583 18072" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24941624..24941806 /note="source:INTACT639F_F363_scaffold_5-int 8395 8558" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24941708..24941829 /note="source:CACAO_M_E33977_F20_scaffold_4 16429 16550" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(24942122..24943144,24943225..24943866) /locus_tag="TCM_045511" /note="paralog of Thecc1EG045501t1" /codon_start=1 /product="Cytochrome p450 79a2" /protein_id="EOY20114.1" /db_xref="TAIR:AT5G05260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HA56" /translation="MDNSSTISFQTQLPWGSHDFAISTLVSFHSTLVLVLLFAPLVLV KLKSTTRKNYTNQARLPQGPTPWPVIGNLPEIWKNKPAFRWIHGLMKQLDTDIACIRL ANIHVIPVTSPEIAREFLKKYDAVFASRPVTMATELVSRGYLSTALVPWGDQWKKMRK VIASNIIKPARLSSLLHKRTQEADNLVRFIYNQCINPENDSSNGSVINLRLAVRQYTG NVIRKMMFDRRYFGQGKEDGGPGHEEEEHVESLFTVLKHLYSFILSDYVPWLRPLDLE GHEKIVSEAVRIVNGYHDPIIDERVQQWREGKKKEAEDLLDAFILAKDLDGKPALSVE EIKAQCTELMLATVDNPANAVEWAMAEMINQPETLQKAIKEIDGVVGKDRLVQETDIP KLNYVKACAREAFRLHPIAPFNLPHVSNTDVIVAGYFIPKGSHVLLSRVGLGRNPKVW DEPLKFKPERHLKDGSIEVDLTETELRFISFSTGRRGCMGVALGSEMTIMLLARLIQG FAWKAQPDEAKIDLSESEDDLFLAKPLHALAKPRLSAAVYAQLNYK" gene complement(24944478..24951924) /locus_tag="TCM_045512" /note="dbxref CacaoGD:Thecc1EG045512" mRNA complement(join(24944478..24944709,24945643..24945821, 24946160..24946227,24946403..24946448,24946530..24946744, 24946828..24946928,24947616..24947743,24948085..24948671, 24951889..24951924)) /locus_tag="TCM_045512" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045505t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(join(24945650..24945821,24946160..24946227, 24946403..24946448,24946530..24946744,24946828..24946928, 24947616..24947743,24948085..24948197)) /locus_tag="TCM_045512" /note="paralog of Thecc1EG045505t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20115.1" /translation="MVGFFPFTYLGFLMGANPRRVSFWDLVTNKVRQGLALRVHWIPT ISHSNKMPLVWKCIKQLPTNDKVVDLVGFSACQWCIALALSRHGSLSWKDVLNSMLTD LLEVSLVPLDVELLFESDSKVALSWVSDVRQRPWKLWQIFNEIDYLSRTIGNVSYINV LREGNSFADSLGKLGLDRCSMFTALCSALTAFLLLLCSANKKPYGRPHETHVVYSLPW KCRGAKYAFRTTMHVLELYSPWGFIPEFDTSTVMDQQLGTKQTLYGPPTRDPRYVSPY LATQ" mobile_element 24946971..24947358 /note="source:CACAO_M_S_E6161_F17_scaffold_2 1 388" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24957124..24968216 /locus_tag="TCM_045515" /note="dbxref CacaoGD:Thecc1EG045515" mRNA join(24957124..24957718,24966158..24967287, 24967435..24968216) /locus_tag="TCM_045515" /product="Cytochrome p450 79a2" /inference="alignment:exonerate- protein:2:TAIR:AT5G05260.1.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045495t1" /inference="similar to AA sequence:TAIR:AT5G05260.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc18172t1" mobile_element complement(24957706..24960249) /note="source:scaffold_4_CACTA_0497 8624 10747" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24959091..24960421 /note="source:scaffold_9_CACTA_0937 1233 2563" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24960425..24961442) /note="source:scaffold_4_CACTA_0497 4378 5398" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24962350..24963415 /note="source:scaffold_1_CACTA_0016 1415 2484" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24964326..24965946 /note="source:scaffold_10_CACTA_0130 7930 9434" /mobile_element_type="transposon:TIR/CACTA" CDS join(24966259..24967287,24967435..24968067) /locus_tag="TCM_045515" /note="paralog of Thecc1EG045495t1" /codon_start=1 /product="Cytochrome p450 79a2" /protein_id="EOY20116.1" /db_xref="TAIR:AT5G05260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HA56" /translation="MENSSSKNVTFSLLSWGLLYFATSRLVSFHSPFLFVLLTIFLFV VKAKGKASKTKSNQASLPPGPTPWPIIGNLPEIWRKRPAFRWIHGLMKELHTDILCVR LANIHVIAVTSPVIALEFLKKNDSVFASRPVTMATEYSSRRFLTIAVVPWGDQWKKMR RVVTCEILSTSKLHSLLENRTEEADNLVRFIYNQCKSNGHDNSTASAVVNLRLAMRQY SGNVIRKMIFNRRYFGEGRKDGGPGYEEEEHVESLFTVLRHAYSFILSDYIPWLRSFD LEGHEKTVSKAMKIVNEYQDPLIDERVQEWREGKRTESEDLLDAFILAKDSNGKPALS IEEIKAQCAELMLSTVDNPSNAVEWAMAEMINQPETLLKAVEEIDAVVGKERLVQEAD IPKLNYVKACAREGFRLHPVAPFNLPHVSTADATVAGYFIPKGSHVLLSRYGLGRNPK VWDDPLKFKPERHLKDGSMCVDLTETDLRFISFSTGRRGCMAVALGTAMTVMLLARLL QGFTWRVPPNEASIDLSEANDDLFMAKPLQALGQPRLPAHLYPAN" gene complement(24968218..24972869) /locus_tag="TCM_045516" /note="dbxref CacaoGD:Thecc1EG045516" mRNA complement(join(24968218..24968937,24969613..24969731, 24970130..24970350,24970443..24970505,24970825..24971937, 24972236..24972338,24972427..24972869)) /locus_tag="TCM_045516" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002380" /inference="similar to AA sequence:ricco:29729.m002380" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc8958t14" mRNA complement(join(24968629..24968937,24969613..24969731, 24969849..24969957,24970130..24970350,24970443..24970505, 24970825..24971937,24972236..24972338,24972427..24972773)) /locus_tag="TCM_045516" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29729.m002380" /inference="similar to AA sequence:ricco:29729.m002380" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7594t2; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7594t2; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc8958t14" CDS complement(join(24968820..24968937,24969613..24969731, 24970130..24970350,24970443..24970505,24970825..24971937, 24972236..24972338,24972427..24972495)) /locus_tag="TCM_045516" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29729.m002380" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20117.1" /db_xref="TAIR:AT5G05240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IQ59" /translation="MEDQAESAMVSKGLVLMPGSDSKLVGGKRSIDELEERHEVSPKR VKMRDLDSVIRSEEINAHNSKSLKRRESSQPLQVSGEGVSQVTEVPVTLNFDGSQVER TTGDKLLAVVQPLSRPLDLNTEVCFANNEYSDNNPKCEEKFDKLCSQESNCATSKGIG LDLNAEDVSSSINCESVPHKHVNNLKPKDVSECGSSIGPVEEKDSLRVWKEMKQNGFL SSSHGGISMQNGLLSSSHSGIPVPKQRGRKSKNDVLKKKMELAKREQVDRFTKIAAPS GLLNGLNPGIINHVRNRKQVHSIIEALVKSEKLENLHSESKSGTKEDDGKKDHGNIDD SALHRLSCYHEDGPPNTKSMSKKARGYLVPMHKPFSSISEERSGDGDSSMVDPVSEDD ALALKLSSSTKASENASSFSNEESANFTSASFLSVKAASVASQWLELLQQDIKGRLSA LRRSKKKVRAVITTELPFLISKEFSSNQGSEPNLITTSADGFSTDATAEMHRARWSAL FDQMDKALSEEEKQLESWLNQVKGMQLHCDQGLQHMHWNLLYSLPQLGASENNIRSGM GDSYEKELAVRAAAASIYSTCDFLLSKENVPCSLI" CDS complement(join(24969940..24969957,24970130..24970350, 24970443..24970505,24970825..24971937,24972236..24972338, 24972427..24972495)) /locus_tag="TCM_045516" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002380" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY20118.1" /db_xref="TAIR:AT5G05240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IQ59" /translation="MEDQAESAMVSKGLVLMPGSDSKLVGGKRSIDELEERHEVSPKR VKMRDLDSVIRSEEINAHNSKSLKRRESSQPLQVSGEGVSQVTEVPVTLNFDGSQVER TTGDKLLAVVQPLSRPLDLNTEVCFANNEYSDNNPKCEEKFDKLCSQESNCATSKGIG LDLNAEDVSSSINCESVPHKHVNNLKPKDVSECGSSIGPVEEKDSLRVWKEMKQNGFL SSSHGGISMQNGLLSSSHSGIPVPKQRGRKSKNDVLKKKMELAKREQVDRFTKIAAPS GLLNGLNPGIINHVRNRKQVHSIIEALVKSEKLENLHSESKSGTKEDDGKKDHGNIDD SALHRLSCYHEDGPPNTKSMSKKARGYLVPMHKPFSSISEERSGDGDSSMVDPVSEDD ALALKLSSSTKASENASSFSNEESANFTSASFLSVKAASVASQWLELLQQDIKGRLSA LRRSKKKVRAVITTELPFLISKEFSSNQGSEPNLITTSADGFSTDATAEMHRARWSAL FDQMDKALSEEEKQLVFFYQ" gene complement(24975564..24976488) /locus_tag="TCM_045517" /note="dbxref CacaoGD:Thecc1EG045517" mRNA complement(24975564..24976488) /locus_tag="TCM_045517" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08630.1" /inference="similar to AA sequence:frave:gene21349" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7290t2" CDS complement(24975609..24976298) /locus_tag="TCM_045517" /note="dbxref frave:gene21349" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20119.1" /db_xref="TAIR:AT3G56360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IQ58" /translation="MAVAGCSVGCGGGVYLQRQDHPWDIPFNVRNGCRLACSFMVSKP RTTKILASSSSSKVSLQPLPTKQKEERKRNELLYEKIDEWMRDSVVEIVKKLPESPLL VHVYSDNNTTRTRTEKAEEGNWVLMKQKWEKGVTPMPDGVIFVEQIQEEEGEEIEEER KNEAVSRAWGIVVQGKGEGCGPPACYLLKTSKVGSGLGLRCTHFCLVKVKSFRETAFS QLKNCWLLQGN" gene 24977244..24980522 /locus_tag="TCM_045518" /note="dbxref CacaoGD:Thecc1EG045518" mRNA join(24977244..24977723,24977879..24978247, 24980067..24980387,24980496..24980522) /locus_tag="TCM_045518" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.26 coverage" CDS 24977892..24978146 /locus_tag="TCM_045518" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20120.1" /translation="MRNAGDSYPSGMGEEEVQEKQVFCVIKAFSTRTGRLWLSGESGP LRFDRTVERVNATVWDGTGKGTWWHAYIACRVYAGTRSAL" gene complement(24980169..24986959) /locus_tag="TCM_045519" /note="dbxref CacaoGD:Thecc1EG045519" mRNA complement(join(24980169..24980994,24981102..24981292, 24981404..24981872,24982023..24982569,24984367..24984770, 24984910..24985472,24985965..24986020,24986144..24986251, 24986672..24986959)) /locus_tag="TCM_045519" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01032686001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8650t1_C2" CDS complement(join(24980692..24980994,24981102..24981292, 24981404..24981872,24982023..24982569,24984367..24984770, 24984910..24985472,24985965..24986020,24986144..24986196)) /locus_tag="TCM_045519" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY20121.1" /db_xref="Phytozome:GSVIVT01032686001" /db_xref="TAIR:AT5G36110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IQ57" /translation="MHREGTTFEALISTDDGRQVVHDEPIAYVIMMIICLETLNQQLY SIGLVPLAMEVLFKLKELCSEPKRAITIIFITPVTVFLAYFKFRIFPLLGKKLPPGSL GLPLIGESISFVMAHKHDKTVDWIQKHVNKYGPVFKTSLMGSNAVFLTGQAGNRFISS GRDNGIASNQVGTAGGILGKHSIFELPGPRRKIVRGAIMNFLKPERIQRFVSVMDSLV QQEMFQELSVRDTVKMVTLIKKITFNVSCSLLFRLQESKEKDDLFKDFIVAIKGLWAI PLKFPGTAYQKALQARGRISRLLSKLIKGRKKEIDGGSKGSLDDNDLISCLLMLRDEN GDPLLEEEIIGNVISVMIASHDTTYFGLYILLKARMDILPGLPEPSSDLKLQFISIVL ATLVAVLGCFKFIVSPLLGKKLPPGSFGFPLIGESISFARAQTQDRTPEWILNRIKKY GPVFKTSIMGSKMVVLTGQAGNRFVFNGGDHGLSCNQPTSVVRVLGKYSLFEMSGSRH KLVRGAITNFLKPESIQRFLAKMDSLVQQQLLKELHGKDSIKIVPLMKKITFNITCSI FFGLPDGKEKDELLEDFSVTVKGVWAIPFNIPGTVFHRAMQARRRVCQLLSNLIMIRK KQEEEGTVDPNDDNIISSLLVLRDENGQPLLEEEILDVFLSLIMASHDTTAILLTLFI RHLSRDAEVSRKVVEEQNEVVKAMKTNGGKVTWSEIQMMRYTWSAAQELMRVNPPMLG SFRLVTKDITFDGYDIPKGWQIFWVAPGTHMDSNIFEDPEKFDPSRFENSSKSFPPYT YVPFGAGPRICAGVEFARVEALLIIHHLVTKYSWTEMIPDEPITREPMPYPAMGLPVK LYPKN" mobile_element 24986926..24987069 /note="source:INTACT1608F_F65_scaffold_10-int 2989 3140" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24987408..24989446 /locus_tag="TCM_045520" /note="dbxref CacaoGD:Thecc1EG045520" mRNA join(24987408..24988126,24988269..24988275, 24988378..24988461,24988602..24988757,24988856..24989082, 24989182..24989446) /locus_tag="TCM_045520" /product="Chalcone-flavanone isomerase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08610.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s08610.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg5279t1" CDS join(24987968..24988126,24988269..24988275, 24988378..24988461,24988602..24988757,24988856..24989082, 24989182..24989343) /locus_tag="TCM_045520" /codon_start=1 /product="Chalcone-flavanone isomerase family protein" /protein_id="EOY20122.1" /db_xref="Phytozome:POPTR_0019s08610.1" /db_xref="TAIR:AT5G05270.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PI95" /translation="MSGNVVIASQMGENEMNHKLSTSLTYHPFAIPRLTEAWSVSYAS GMSEVQPELIIMGTEMVMVDEIPFPPQITTTKPLSLLGYGITDIEIHFLQIKFTAIGV YLEPEVAGHLQQWKGKPGNVLAEDDDFFEALINAPVEKFLRVVVIKEIKGSQYGVQLE SAVRDRLAADDKYEEEEEEALEKVVEFFQSKYFKKNSIITYHFPANSCTAEIAFTTEG KEEAKIKVENANVVEMIKKWYLGGTRGVSATTITSLANALSARLCK" gene complement(24990023..24992873) /locus_tag="TCM_045522" /note="dbxref CacaoGD:Thecc1EG045522" mRNA complement(join(24990023..24990298,24991992..24992873)) /locus_tag="TCM_045522" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032684001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019707t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032684001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09439t00001" CDS complement(join(24990098..24990298,24991992..24992573)) /locus_tag="TCM_045522" /note="paralog of Thecc1EG019707t1" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY20123.1" /db_xref="Phytozome:GSVIVT01032684001" /db_xref="TAIR:AT3G10910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGS7" /translation="MVTHYHSPHRLLLDTQSSASPTNGNRTRSSFSNEANFDTNMVII LAALLCALICALGLNSIVRCALRCSRRFAFETPDETAARLAATGLKKRALRQIPVAIY SSGINIKATDCPICLGEFIDGERVRVLPKCHHGFHVRCIDTWLLSHSSCPTCRQSLLE QPTSSDAGAEMEAGVQQHGNSPGGQFDVPVAADEVKSLHLKQLAEELFAFKLVVEIQV GGNARFFGKTCLERESPKAEAMLFKHAWPFLFWVNLQKGVNK" gene complement(24992933..24994413) /locus_tag="TCM_045523" /note="dbxref CacaoGD:Thecc1EG045523" mRNA complement(join(24992933..24993808,24994100..24994413)) /locus_tag="TCM_045523" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.74 coverage" CDS complement(join(24993758..24993808,24994100..24994279)) /locus_tag="TCM_045523" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20124.1" /translation="MLWCVKSRVHTRRRRQGLKTVNSTRHMWTKELLLGGHGDNALSH MISMCPVFSFNNVVSQKHKHIAIISNIKGMQR" mobile_element 24995045..24995099 /note="source:CACAO_M_E49559_F88_scaffold_7 7637 7693" /mobile_element_type="retrotransposon:LTR/Copia" gene 24995558..25002004 /locus_tag="TCM_045524" /note="dbxref CacaoGD:Thecc1EG045524" mRNA join(24995558..24996193,24999764..24999896, 25000236..25000344,25000690..25002004) /locus_tag="TCM_045524" /product="Basic-leucine zipper transcription factor family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21344" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042286t1" /inference="similar to AA sequence:ricco:29729.m002363" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11235t00001" mRNA join(24995558..24996193,24999764..24999896, 25000236..25000320,25000690..25002004) /locus_tag="TCM_045524" /product="Basic-leucine zipper transcription factor family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene21344" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042286t1" /inference="similar to AA sequence:ricco:29729.m002363" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b043909t1a2; inference alignment:Newbler:10:TSA:cgbaL_g11235t00001" CDS join(24995691..24996193,24999764..24999896, 25000236..25000344,25000690..25001066) /locus_tag="TCM_045524" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29729.m002363; paralog of Thecc1EG042286t1" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein isoform 1" /protein_id="EOY20125.1" /db_xref="TAIR:AT2G40620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23726" /translation="MPDPPSLSPNPDQPIHSNASSTTQTTPSFANPTTFRGSYHRRAQ SEVQFRIPDDLDLVSDPFEGLGSEDDLFCSYMDIEKLGGSSKGADEGGAAGSSSAGSG QNPKGGEETSGGSGMGEKSTGGGKGRHRYSNSVDGCSMMESIEAKKAMAPDKLAELWT VDPKRAKRIIANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGL STENTELKLRLQAMEQQAQLRDGMFCPNQLALNEALKKEVERLKIATGEMTTPTDTFN LGMHHIPYTQSSYFPPQPQHVQVDTHNIQMPQFHPFQSNMLTPNQSVVAASNSHAYAD MMQQDPLGRLQGLDISSRGSRLVKSEGPSISAGEHGGTL" CDS join(24995691..24996193,24999764..24999896, 25000236..25000320,25000690..25001066) /locus_tag="TCM_045524" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002363; paralog of Thecc1EG042286t1" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein isoform 2" /protein_id="EOY20126.1" /db_xref="TAIR:AT2G40620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23726" /translation="MPDPPSLSPNPDQPIHSNASSTTQTTPSFANPTTFRGSYHRRAQ SEVQFRIPDDLDLVSDPFEGLGSEDDLFCSYMDIEKLGGSSKGADEGGAAGSSSAGSG QNPKGGEETSGGSGMGEKSTGGGKGRHRYSNSVDGCSMMESIEAKKAMAPDKLAELWT VDPKRAKRIIANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGL STENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEMTTPTDTFNLGMHHIPY TQSSYFPPQPQHVQVDTHNIQMPQFHPFQSNMLTPNQSVVAASNSHAYADMMQQDPLG RLQGLDISSRGSRLVKSEGPSISAGEHGGTL" mRNA join(<24995715..24996191,25000689..25001748) /locus_tag="TCM_045524" /product="Basic-leucine zipper transcription factor family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene21344" /inference="similar to AA sequence:ricco:29729.m002363" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17852t2; inference alignment:Newbler:10:TSA:cgbaL_g11235t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7819t8_C2" CDS join(<24995715..24996191,25000689..25001066) /locus_tag="TCM_045524" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29729.m002363" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein isoform 3" /protein_id="EOY20127.1" /translation="PNPDQPIHSNASSTTQTTPSFANPTTFRGSYHRRAQSEVQFRIP DDLDLVSDPFEGLGSEDDLFCSYMDIEKLGGSSKGADEGGAAGSSSAGSGQNPKGGEE TSGGSGMGEKSTGGGKGRHRYSNSVDGCSMMESIEAKKAMAPDKLAELWTVDPKRAKA LNEALKKEVERLKIATGEMTTPTDTFNLGMHHIPYTQSSYFPPQPQHVQVDTHNIQMP QFHPFQSNMLTPNQSVVAASNSHAYADMMQQDPLGRLQGLDISSRGSRLVKSEGPSIS AGEHGGTL" mobile_element complement(24997172..24997268) /note="source:scaffold_1_CACTA_0023 6345 6444" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24997726..24997815) /note="source:CACAO_M_E69780_F2_scaffold_9 1560 1652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24998001..24998092) /note="source:scaffold_1_CACTA_0023 6351 6444" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24998278..24998364) /note="source:CACAO_M_E69780_F2_scaffold_9 1566 1652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24998537..24998628) /note="source:CACAO_M_E69780_F2_scaffold_9 1561 1655" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24998540..24998650 /note="source:scaffold_3_CACTA_0377 2101 2216" /mobile_element_type="transposon:TIR/CACTA" gene complement(25002097..25003389) /locus_tag="TCM_045525" /note="dbxref CacaoGD:Thecc1EG045525" mRNA complement(join(25002097..25002729,25002918..25003389)) /locus_tag="TCM_045525" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g12815t00001" mobile_element complement(25002204..25002254) /note="source:scaffold_5_CACTA_0612 6264 6314" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(25002720..25002729,25002918..25003282)) /locus_tag="TCM_045525" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20128.1" /translation="MSRSSFTCKLLCTLFVLTGLMTESPRVVHALTCPEVSKALVPCV TYLATGSSFGHCCTQIRLLNSKAKTTSDRQGVCRCLTSLAAQFQRRHRLNFNLVKQLP GKCNVNIRYNITTQNPNCSQVK" gene 25008371..25009903 /locus_tag="TCM_045526" /note="dbxref CacaoGD:Thecc1EG045526" mRNA join(25008371..25008657,25008877..25009189, 25009282..25009903) /locus_tag="TCM_045526" /product="Expansin A8, ALPHA 1.11,EXPA8" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g39120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042282t1" /inference="similar to AA sequence:frave:gene21343" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7064t1" CDS join(25008513..25008657,25008877..25009189, 25009282..25009585) /locus_tag="TCM_045526" /note="dbxref frave:gene21343; paralog of Thecc1EG042282t1" /codon_start=1 /product="Expansin A8, ALPHA 1.11,EXPA8" /protein_id="EOY20129.1" /db_xref="TAIR:AT2G40610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22874" /translation="MAKAGLSAASLLLFLFNFCLRGAYGDYGGGWEGGHATFYGGGDA SGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDNDPKWCLAGSIIV TATNFCPPNNALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPISFRRVPCTKKG GIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSNTGWQPMSRNWGQNWQSNSYLNGQ SLSFQVTTSDGRTVTSYNVVPGSWQFGQTFEGGQF" mobile_element complement(25011551..25012003) /note="source:scaffold_10_CACTA_0130 7078 7538" /mobile_element_type="transposon:TIR/CACTA" gene 25014654..25024514 /locus_tag="TCM_045527" /note="dbxref CacaoGD:Thecc1EG045527" mRNA join(25014654..25015011,25015117..25015176, 25015796..25015913,25017219..25017291,25018049..25018094, 25018310..25018420,25019734..25019821,25020783..25020879, 25021095..25021155,25021271..25021401,25021802..25021919, 25022561..25022684,25022886..25023167,25024024..25024514) /locus_tag="TCM_045527" /product="Pseudouridine synthase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28644.m000918" /inference="similar to AA sequence:Phytozome:GSVIVT01013676001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b043912t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7068t1" mRNA join(25014654..25015011,25015117..25015176, 25015796..25015913,25017219..25017291,25018049..25018094, 25018310..25018420,25019734..25019821,25020783..25020879, 25021095..25021155,25021271..25021401,25021802..25021919, 25022561..25022684,25022886..25022993,25023093..25023167, 25024024..25024514) /locus_tag="TCM_045527" /product="Pseudouridine synthase isoform 1" /inference="alignment:exonerate- protein:2:ricco:28644.m000918" /inference="similar to AA sequence:Phytozome:GSVIVT01013676001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7068t1" mRNA join(25014654..25015011,25015117..25015176, 25015796..25015913,25017219..25017291,25018049..25018094, 25018310..25018420,25021271..25021401,25021802..25021919, 25022561..25022684,25022886..25022993,25023093..25023167, 25024024..25024514) /locus_tag="TCM_045527" /product="Pseudouridine synthase isoform 3" /inference="alignment:exonerate- protein:2:ricco:28644.m000918" /inference="similar to AA sequence:Phytozome:GSVIVT01013676001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b043912t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7068t1" CDS join(25014928..25015011,25015117..25015176, 25015796..25015913,25017219..25017291,25018049..25018094, 25018310..25018420,25019734..25019821,25020783..25020879, 25021095..25021155,25021271..25021401,25021802..25021919, 25022561..25022684,25022886..25023167,25024024..25024067) /locus_tag="TCM_045527" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pseudouridine synthase family protein isoform 2" /protein_id="EOY20131.1" /db_xref="Phytozome:GSVIVT01013676001" /db_xref="TAIR:AT1G34150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GT52" /translation="MSNEVREIAGDVVAMMQSQLQSLQNRVKELEAENAKLSAQLSKC CCHKTEKMHNGSDVKCFNSSVASQRKNNGDDKTRKKKASERIPGYNLEIMTHHSKRYV ALKVMYFGKRFYGFASEAQMDPTVESEIFKALEKTRLLVGDKKESLYSRCGRTDKGVS AVGQVIALYLRSNLKEADANDQTSGELISGTRTEGEIDYVRVLNRVLPNDIRILGWSP VSIDFNARFSCLAREYTYFFWRGNLNFPDMENAGKKFIGEHDFRNFCKMDAANVHNYR RRVTLFEISSSNMRFEGNQLCVIKVKGSAFLWHQVRCMVAVLFMIGQGVESIAVIDAL LDTEKTPRKPQYAMAPEIPLVLQSCDFEDVNFICSSDSGQALRIHLENECQAYQLQSA IFHEALLSCLPLANGAETKFLPYISVKVLLFCLSVLICIAERTLTFSGKSLLNEGTIK KVASHVPLLSRPTEPSYEERCAKLNSRR" CDS join(25014928..25015011,25015117..25015176, 25015796..25015913,25017219..25017291,25018049..25018094, 25018310..25018420,25019734..25019821,25020783..25020879, 25021095..25021155,25021271..25021401,25021802..25021919, 25022561..25022684,25022886..25022993,25023093..25023167, 25024024..25024067) /locus_tag="TCM_045527" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pseudouridine synthase isoform 1" /protein_id="EOY20130.1" /db_xref="Phytozome:GSVIVT01013676001" /db_xref="TAIR:AT1G34150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GT52" /translation="MSNEVREIAGDVVAMMQSQLQSLQNRVKELEAENAKLSAQLSKC CCHKTEKMHNGSDVKCFNSSVASQRKNNGDDKTRKKKASERIPGYNLEIMTHHSKRYV ALKVMYFGKRFYGFASEAQMDPTVESEIFKALEKTRLLVGDKKESLYSRCGRTDKGVS AVGQVIALYLRSNLKEADANDQTSGELISGTRTEGEIDYVRVLNRVLPNDIRILGWSP VSIDFNARFSCLAREYTYFFWRGNLNFPDMENAGKKFIGEHDFRNFCKMDAANVHNYR RRVTLFEISSSNMRFEGNQLCVIKVKGSAFLWHQVRCMVAVLFMIGQGVESIAVIDAL LDTEKTPRKPQYAMAPEIPLVLQSCDFEDVNFICSSDSGQALRIHLENECQAYQLQSA IFHEALLSCLPLANGKSLLNEGTIKKVASHVPLLSRPTEPSYEERCAKLNSRR" CDS join(25014928..25015011,25015117..25015176, 25015796..25015913,25017219..25017291,25018049..25018094, 25018310..25018420,25021271..25021401,25021802..25021919, 25022561..25022684,25022886..25022993,25023093..25023167, 25024024..25024067) /locus_tag="TCM_045527" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pseudouridine synthase isoform 3" /protein_id="EOY20132.1" /db_xref="Phytozome:GSVIVT01013676001" /db_xref="TAIR:AT1G34150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GT52" /translation="MSNEVREIAGDVVAMMQSQLQSLQNRVKELEAENAKLSAQLSKC CCHKTEKMHNGSDVKCFNSSVASQRKNNGDDKTRKKKASERIPGYNLEIMTHHSKRYV ALKVMYFGKRFYGFASEAQMDPTVESEIFKALEKTRLLVGDKKESLYSRCGRTDKGVS AVGQDMENAGKKFIGEHDFRNFCKMDAANVHNYRRRVTLFEISSSNMRFEGNQLCVIK VKGSAFLWHQVRCMVAVLFMIGQGVESIAVIDALLDTEKTPRKPQYAMAPEIPLVLQS CDFEDVNFICSSDSGQALRIHLENECQAYQLQSAIFHEALLSCLPLANGKSLLNEGTI KKVASHVPLLSRPTEPSYEERCAKLNSRR" gene complement(25024802..25032245) /locus_tag="TCM_045528" /note="dbxref CacaoGD:Thecc1EG045528" mRNA complement(join(25024802..25025725,25025828..25025918, 25026104..25026274,25027533..25027643,25027765..25027824, 25028631..25028672,25028773..25028835,25028915..25028986, 25029075..25029176,25029255..25029356,25029462..25029534, 25029636..25029688,25029787..25029908,25030230..25030371, 25031934..25032245)) /locus_tag="TCM_045528" /product="Histidinol dehydrogenase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s16630.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s46960.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05968t00001" mRNA complement(join(25025048..25025725,25025828..25025918, 25026104..25026274,25027533..25027643,25027765..25027824, 25028631..25028672,25028773..25028835,25028915..25028986, 25029075..25029176,25029255..25029356,25029462..25029534, 25029636..25029688,25029787..25029908,25030045..25030769, 25031938..25032245)) /locus_tag="TCM_045528" /product="Histidinol dehydrogenase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s16630.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16630.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b043913t1a2; inference alignment:Newbler:10:TSA:cgbaB_g05968t00001" mRNA complement(join(25025048..25025725,25025828..25025918, 25026104..25026274,25027533..25027643,25027765..25027824, 25028631..25028672,25028773..25028835,25028915..25028986, 25029075..25029176,25029255..25029356,25029462..25029534, 25029636..25029688,25029787..25029908,25030045..25030141, 25030230..25030458)) /locus_tag="TCM_045528" /product="Histidinol dehydrogenase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s16630.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16630.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7131t4; alternateUTRof:Thecc1EG045528t2; inference alignment:Newbler:10:TSA:cgbaB_g05968t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4878t1" CDS complement(join(25025442..25025725,25025828..25025918, 25026104..25026274,25027533..25027643,25027765..25027824, 25028631..25028672,25028773..25028835,25028915..25028986, 25029075..25029176,25029255..25029356,25029462..25029534, 25029636..25029688,25029787..25029908,25030230..25030350)) /locus_tag="TCM_045528" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Histidinol dehydrogenase isoform 1" /protein_id="EOY20133.1" /db_xref="Phytozome:POPTR_0001s46960.1" /db_xref="TAIR:AT5G63890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HW95" /translation="MFACLWRLALLFFCLSSLSCCAALLFSEQQLLIIPICHLLGLAC KKVRCAMKTYQLSELGPAEVESLKARPRIDFSSIFGMVQPIIDDVRSRGDAAVKVYTE KFDKVNLHKIVENVSELPYPELDPTIKEAFDVAYENIYAFHLAQKSSAKSVETMKGVK CKRVARSIGSVGLYVPGGTAVLPSTALMLSIPAKIAGCKTVVLATPPGQDGSICKEVL YCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKILGPGNQYVTAAKMILQNSEAMI SIDMPAGPSEVLVIADKHANPVHIAADLLSQAEHGPDSQVVLVIAGDGVGLKAIEEEI SKQCQSLPRGEFASKALSHSFTVFACDIVEAISFSNLYAPEHLIMNVKDAEKWEGFVE NAGSVFLGQWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLS NLGPHVATMAEVEGLDAHKRAVTLRLEDINARHASSVR" CDS complement(join(25025442..25025725,25025828..25025918, 25026104..25026274,25027533..25027643,25027765..25027824, 25028631..25028672,25028773..25028835,25028915..25028986, 25029075..25029176,25029255..25029356,25029462..25029534, 25029636..25029688,25029787..25029908,25030045..25030135)) /locus_tag="TCM_045528" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Histidinol dehydrogenase isoform 2" /protein_id="EOY20134.1" /db_xref="Phytozome:POPTR_0011s16630.1" /db_xref="TAIR:AT5G63890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HW95" /translation="MDSQLLRFCIKPFHFPRFPSFASPNFISVSGLACKKVRCAMKTY QLSELGPAEVESLKARPRIDFSSIFGMVQPIIDDVRSRGDAAVKVYTEKFDKVNLHKI VENVSELPYPELDPTIKEAFDVAYENIYAFHLAQKSSAKSVETMKGVKCKRVARSIGS VGLYVPGGTAVLPSTALMLSIPAKIAGCKTVVLATPPGQDGSICKEVLYCAKKAGVTH ILKAGGAQAISAMAWGTESCPKVEKILGPGNQYVTAAKMILQNSEAMISIDMPAGPSE VLVIADKHANPVHIAADLLSQAEHGPDSQVVLVIAGDGVGLKAIEEEISKQCQSLPRG EFASKALSHSFTVFACDIVEAISFSNLYAPEHLIMNVKDAEKWEGFVENAGSVFLGQW TPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLSNLGPHVATMA EVEGLDAHKRAVTLRLEDINARHASSVR" CDS complement(join(25025442..25025725,25025828..25025918, 25026104..25026274,25027533..25027643,25027765..25027824, 25028631..25028672,25028773..25028835,25028915..25028986, 25029075..25029176,25029255..25029356,25029462..25029534, 25029636..25029688,25029787..25029908,25030045..25030135)) /locus_tag="TCM_045528" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Histidinol dehydrogenase isoform 2" /protein_id="EOY20135.1" /db_xref="Phytozome:POPTR_0011s16630.1" /db_xref="TAIR:AT5G63890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HW95" /translation="MDSQLLRFCIKPFHFPRFPSFASPNFISVSGLACKKVRCAMKTY QLSELGPAEVESLKARPRIDFSSIFGMVQPIIDDVRSRGDAAVKVYTEKFDKVNLHKI VENVSELPYPELDPTIKEAFDVAYENIYAFHLAQKSSAKSVETMKGVKCKRVARSIGS VGLYVPGGTAVLPSTALMLSIPAKIAGCKTVVLATPPGQDGSICKEVLYCAKKAGVTH ILKAGGAQAISAMAWGTESCPKVEKILGPGNQYVTAAKMILQNSEAMISIDMPAGPSE VLVIADKHANPVHIAADLLSQAEHGPDSQVVLVIAGDGVGLKAIEEEISKQCQSLPRG EFASKALSHSFTVFACDIVEAISFSNLYAPEHLIMNVKDAEKWEGFVENAGSVFLGQW TPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLSNLGPHVATMA EVEGLDAHKRAVTLRLEDINARHASSVR" gene 25032295..25034986 /locus_tag="TCM_045531" /note="dbxref CacaoGD:Thecc1EG045531" mRNA join(25032295..25032726,25032830..25032972, 25033299..25033347,25033443..25033545,25033636..25033731, 25033822..25033896,25034350..25034419,25034707..25034986) /locus_tag="TCM_045531" /product="Appr-1-p processing enzyme family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032680001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045533t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032680001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b043914t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc104t7_C2" mRNA join(25032299..25032662,25032777..25032972, 25033299..25033329,25033443..25033545,25033636..25033731, 25033822..25033896,25034350..25034419,25034707..25034808) /locus_tag="TCM_045531" /product="Appr-1-p processing enzyme family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032680001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045533t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032680001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc104t10; inference alignment:Newbler:10:TSA:cgbaB_g02278t00002; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc104t7_C2" mRNA join(25032434..25032662,25032777..25032972, 25033299..25033347,25033443..25033545,25033636..25033731, 25033822..25033896,25034350..25034419,25034707..25034972) /locus_tag="TCM_045531" /product="Appr-1-p processing enzyme family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032680001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045533t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032680001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02278t00002" CDS join(25032619..25032662,25032777..25032972, 25033299..25033347,25033443..25033545,25033636..25033731, 25033822..25033896,25034350..25034419,25034707..25034781) /locus_tag="TCM_045531" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG045533t1" /codon_start=1 /product="Appr-1-p processing enzyme family protein isoform 1" /protein_id="EOY20136.1" /db_xref="Phytozome:GSVIVT01032680001" /db_xref="TAIR:AT2G40600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H114" /translation="MSSSSMLFRGGRGIRNHCTFQNIFKVSLTSPSGCGVVGFSNMAS AAGGEDGHFKLSETSELIIKKGDITRWFVDGASDAIVNPANQRMLGGGGADGAIHRAA GPELREACYKVPEVRPDVRCPTGEARITPGFRLPASHVIYTVGPIYDTDKDPKASLSS AYKNSLAVAKENNIKYIAFPSISCGVYGYPFEEAATVAISTVNEYANDIKEVHFVLFA DDIYNIWLNKAKELLQA" CDS join(25032619..25032662,25032777..25032972, 25033299..25033329,25033443..25033545,25033636..25033731, 25033822..25033896,25034350..25034419,25034707..25034781) /locus_tag="TCM_045531" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG045533t1" /codon_start=1 /product="Appr-1-p processing enzyme family protein isoform 3" /protein_id="EOY20138.1" /db_xref="Phytozome:GSVIVT01032680001" /db_xref="TAIR:AT2G40600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H114" /translation="MSSSSMLFRGGRGIRNHCTFQNIFKVSLTSPSGCGVVGFSNMAS AAGGEDGHFKLSETSELIIKKGDITRWFVDGASDAIVNPANQRMLGAIHRAAGPELRE ACYKVPEVRPDVRCPTGEARITPGFRLPASHVIYTVGPIYDTDKDPKASLSSAYKNSL AVAKENNIKYIAFPSISCGVYGYPFEEAATVAISTVNEYANDIKEVHFVLFADDIYNI WLNKAKELLQA" mRNA join(<25032637..25032669,25032774..25032972, 25033299..25033347,25033443..25033545,25033636..25033731, 25033822..>25033895) /locus_tag="TCM_045531" /product="Appr-1-p processing enzyme family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032680001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045533t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400020660" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc140t4; inference alignment:Newbler:10:TSA:cgbaB_g02278t00002; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc104t7_C2" CDS join(<25032638..25032669,25032774..25032972, 25033299..25033347,25033443..25033545,25033636..25033731, 25033822..>25033894) /locus_tag="TCM_045531" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG045533t1" /codon_start=1 /product="Appr-1-p processing enzyme family protein isoform 4" /protein_id="EOY20139.1" /db_xref="Phytozome:PGSC0003DMP400020660" /db_xref="TAIR:AT2G40600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H114" /translation="CLEGAEESGYYRNHCTFQNIFKVSLTSPSGCGVVGFSNMASAAG GEDGHFKLSETSELIIKKGDITRWFVDGASDAIVNPANQRMLGGGGADGAIHRAAGPE LREACYKVPEVRPDVRCPTGEARITPGFRLPASHVIYTVGPIYDTDKDPKASLSSAYK NSLAVAKENNIKYIAFPSISCGVY" CDS join(25032856..25032972,25033299..25033347, 25033443..25033545,25033636..25033731,25033822..25033896, 25034350..25034419,25034707..25034781) /locus_tag="TCM_045531" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG045533t1" /codon_start=1 /product="Appr-1-p processing enzyme family protein isoform 2" /protein_id="EOY20137.1" /db_xref="Phytozome:GSVIVT01032680001" /db_xref="TAIR:AT2G40600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H114" /translation="MASAAGGEDGHFKLSETSELIIKKGDITRWFVDGASDAIVNPAN QRMLGGGGADGAIHRAAGPELREACYKVPEVRPDVRCPTGEARITPGFRLPASHVIYT VGPIYDTDKDPKASLSSAYKNSLAVAKENNIKYIAFPSISCGVYGYPFEEAATVAIST VNEYANDIKEVHFVLFADDIYNIWLNKAKELLQA" gene complement(25035190..25039229) /locus_tag="TCM_045532" /note="dbxref CacaoGD:Thecc1EG045532" mRNA complement(join(25035190..25035666,25035882..25035932, 25036070..25036540,25036640..25036853,25037007..25037236, 25037311..25037423,25038060..25038229,25038880..25039229)) /locus_tag="TCM_045532" /product="Glucan synthase-like 7" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001894t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s22510.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(join(25035470..25035666,25035882..25035932, 25036070..25036540,25036640..25036853,25037007..25037236, 25037311..25037423,25038060..25038229,25038880..25038999)) /locus_tag="TCM_045532" /note="paralog of Thecc1EG001894t1" /codon_start=1 /product="Glucan synthase-like 7" /protein_id="EOY20140.1" /db_xref="Phytozome:POPTR_0005s22510.1" /db_xref="TAIR:AT1G06490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHJ3" /translation="MISASRFRTSTGLGYTRQHWQKVGSSCWGGESWFHRAISLEIYR IKLPGPPTKVGEGKPENQDHAIIFTRGEALQTIDMSQVAFLPPSQDIVIKVLEVRFHY GHPDIFDRILHITRGGISKASKTINFSEDIFAGFNSTLRGGYITHHDYIQVGKGRDVG MNQISCFEAKVASGNGEQTLSRDVYRLGCRFDFYRMLSFYFTTVGFYFNSMVTMLTVY FFLYGRLYLVMSGLERHILNNSIISRNKSLEAALIPQSVFQMGTLLVLLILMDISLEK GFRTALGSKYRATGRGFVAFHAKFADYYGLYSRSHFVKGLELSILLILYQVYGESYRS SNIYLLITCSIWFLVGSWLLAPFIFNPSSFDWQKTVDDWTDWKRWIRIRGGIGIRPEK SWESWWDGEEEHLKYTNILGRVLEIVLALRFLVYQYGVVYHLNIAHHSLRTLLGCFGS NAFIVKVGRQILSVACRLVYRMFKAFVFRASLAFIIGLIIVCGPTTSDLWDAAPAFLP TGWAFLLVSFKLS" gene 25040874..25051311 /locus_tag="TCM_045533" /note="dbxref CacaoGD:Thecc1EG045533" mRNA join(25040874..25041308,25041518..25041566, 25041766..25041856,25041939..25042034,25042133..25042207, 25042678..25042747,25043405..25044458) /locus_tag="TCM_045533" /product="Appr-1-p processing enzyme family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002359" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045536t1" /inference="similar to AA sequence:ricco:29729.m002360" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12638t00001" CDS join(25040946..25041308,25041518..25041566, 25041766..25041856,25041939..25042034,25042133..25042207, 25042678..25042747,25043405..25043479) /locus_tag="TCM_045533" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29729.m002360; paralog of Thecc1EG045536t1" /codon_start=1 /product="Appr-1-p processing enzyme family protein isoform 1" /protein_id="EOY20141.1" /db_xref="TAIR:AT2G40600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S4E3" /translation="MSRNSILFASGGRGNPFLTTASTFCNIKVASVSSYNPNLWWYRI LSSSHRTIPNIFKLSLSPPSSSTAAAAAAAFKVVGFSRMESAIGGEDGHFKLSETTEL KIQKGDITLWFVDGFSDAIVNPANERMLVGGGADGAIHKAAGPELLEACYKIPEVRCP TGESRITPGFKLPASHVIHTVGPIYDSGKDPKASLTNACKNCLSVAKENNVKYIAFTA ISCGVYGYPFEEAATVAISTVKEFADDIKEVHFVLFSDQIYNVWLNKAKELLQA" mRNA join(<25040957..25041308,25041518..25041566, 25041766..25041856,25041939..25042034,25042133..25042207, 25043405..25043872) /locus_tag="TCM_045533" /product="Appr-1-p processing enzyme family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29729.m002359" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045536t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400020660" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7047t2; inference alignment:Newbler:10:TSA:cgbaB_g12638t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc617t3_C2" mRNA join(25040957..25041312,25041518..25041566, 25041766..25041856,25041939..25042034,25042133..25042207, 25042678..25042747,25043405..25043866) /locus_tag="TCM_045533" /product="LRP16, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29729.m002359" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045536t1" /inference="similar to AA sequence:ricco:29729.m002360" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7047t1; inference alignment:Newbler:10:TSA:cgbaB_g12638t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc617t3_C2" CDS join(<25040958..25041308,25041518..25041566, 25041766..25041856,25041939..25042034,25042133..25042207, 25043405..25043450) /locus_tag="TCM_045533" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG045536t1" /codon_start=1 /product="Appr-1-p processing enzyme family protein isoform 3" /protein_id="EOY20143.1" /db_xref="Phytozome:PGSC0003DMP400020660" /db_xref="TAIR:AT2G40600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S4E3" /translation="SILFASGGRGNPFLTTASTFCNIKVASVSSYNPNLWWYRILSSS HRTIPNIFKLSLSPPSSSTAAAAAAAFKVVGFSRMESAIGGEDGHFKLSETTELKIQK GDITLWFVDGFSDAIVNPANERMLVGGGADGAIHKAAGPELLEACYKIPEVRCPTGES RITPGFKLPASHVIHTVGPIYDSGKDPKASLTNACKNCLSVAKENNVKYIAFTAISCG VYGCTLFSSQIKSTMFG" mRNA join(<25040963..25041308,25041518..25041566, 25041766..25041856,25041939..25041983,25043404..25043887, 25050834..25051311) /locus_tag="TCM_045533" /product="Appr-1-p processing enzyme family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29729.m002359" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045536t1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8589t7; inference alignment:Newbler:10:TSA:cgbaB_g12638t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc617t3_C2" CDS join(<25040964..25041308,25041518..25041566, 25041766..25041856,25041939..25041983,25043404..25043479) /locus_tag="TCM_045533" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG045536t1" /codon_start=1 /product="Appr-1-p processing enzyme family protein isoform 4" /protein_id="EOY20144.1" /db_xref="TAIR:AT2G40600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S4E3" /translation="LFASGGRGNPFLTTASTFCNIKVASVSSYNPNLWWYRILSSSHR TIPNIFKLSLSPPSSSTAAAAAAAFKVVGFSRMESAIGGEDGHFKLSETTELKIQKGD ITLWFVDGFSDAIVNPANERMLVGGGADGAIHKAAGPELLEACYKIPEVRCPTGESRI TPGFKLPASHVIHTVGPVHFVLFSDQIYNVWLNKAKELLQA" CDS join(25041217..25041312,25041518..25041566, 25041766..25041856,25041939..25042034,25042133..25042207, 25042678..25042747,25043405..25043479) /locus_tag="TCM_045533" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002360; paralog of Thecc1EG045536t1" /codon_start=1 /product="LRP16, putative isoform 2" /protein_id="EOY20142.1" /db_xref="TAIR:AT2G40600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S4E3" /translation="MVISSCLKPLSLKSRKVTSLCGLLMASLMLLSVNPANERMLVGG GADGAIHKAAGPELLEACYKIPEVRCPTGESRITPGFKLPASHVIHTVGPIYDSGKDP KASLTNACKNCLSVAKENNVKYIAFTAISCGVYGYPFEEAATVAISTVKEFADDIKEV HFVLFSDQIYNVWLNKAKELLQA" gene complement(25045004..25048547) /locus_tag="TCM_045535" /note="dbxref CacaoGD:Thecc1EG045535" mRNA complement(join(25045004..25045790,25045965..25046174, 25046249..25046361,25046424..25046455,25046547..25046591, 25046988..25047124,25047799..25047929,25048387..25048547)) /locus_tag="TCM_045535" /product="Glucan synthase-like 7" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001894t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s22510.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(25045198..25045790,25045965..25046174, 25046249..25046361,25046424..25046455,25046547..25046591, 25046988..25047124,25047799..25047929,25048387..25048451)) /locus_tag="TCM_045535" /note="paralog of Thecc1EG001894t1" /codon_start=1 /product="Glucan synthase-like 7" /protein_id="EOY20145.1" /db_xref="Phytozome:POPTR_0005s22510.1" /db_xref="TAIR:AT1G06490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHJ3" /translation="MWTCSKGGIDLSFESDRIVPGREFKDDFCFKILYQHRFGLYEAT LAKSREQLSGWGILVPQGNIFSPPTKVGEGKPENQNHAIIFTRGEALQTTDMSQVAFL PSSQDIVIKEILNRVVADMHIELEAKEWSQVKLLWVRFHYGHPDIFDRILHIKRGGIS KASKTINFSEDIFAGFNSTLRGGYITHHDYIQVGKGRDVGMNQISCFEAKVASGNGEQ TLSRDVYRLGCRFDFYRMLSFYFTTVGYRAYCVFLLCGRLYLVMSGMERHILNNSIIS RNKSLEAALIPQSVFQMGTLSVLPMLLEISLEKGFRTALGDFIIMQLQLASVFFTFQL GTKAHYFGRTILHGGSKYRATGRGFVVFHAKFADNYRLYSRSHFVKGLELSILLILYQ VYGESYRSSNIYLLITCSIWFRVGSWLLAPFVFNPCSFDWQKTVDDWTD" gene 25048692..25051742 /locus_tag="TCM_045536" /note="dbxref CacaoGD:Thecc1EG045536" mRNA join(25048692..25049167,25049349..25049431, 25049631..25049733,25049816..25049911,25050010..25050084, 25050556..25050625,25051283..25051742) /locus_tag="TCM_045536" /product="Appr-1-p processing enzyme family protein" /inference="alignment:exonerate- protein:2:ricco:29729.m002359.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045533t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032680001" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc617t3_C1" CDS join(25048812..25049167,25049349..25049431, 25049631..25049733,25049816..25049911,25050010..25050084, 25050556..25050625,25051283..25051357) /locus_tag="TCM_045536" /note="paralog of Thecc1EG045533t1" /codon_start=1 /product="Appr-1-p processing enzyme family protein" /protein_id="EOY20146.1" /db_xref="Phytozome:GSVIVT01032680001" /db_xref="TAIR:AT2G40600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S4E3" /translation="MSRNSILFASGGRGNPFLTTASTFCNIKVASVSSYNPNLWWYRI LSRSHCTIPNIFKLSLSPPSSSTAAAAVLRSLGFQGWSQQLGEKMAISSCLKPLSLKS RKVTSLCGLLMAPLMLLIEHSVMISFLQVNPANERMLGGGGADGAIHKAAGPELLEAC YKVPEVQPEVRCPTGEARITPGFKLPASHVIHTVGPIYDSDKDPKASLTSAYKNCLSV AKENNVKYIAFTAVSCGVYGYPFEEAATVAISTVKEFADDIKEVHFVLFSDQIYNVWL NKAKELLQA" gene complement(25052122..25055460) /locus_tag="TCM_045537" /note="dbxref CacaoGD:Thecc1EG045537" mRNA complement(join(25052122..25052665,25053057..25053126, 25053828..25053969,25054059..25054239,25055205..25055460)) /locus_tag="TCM_045537" /product="Reticulon family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08560.1" /inference="similar to AA sequence:frave:gene21327" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06482t00001" CDS complement(join(25052499..25052665,25053057..25053126, 25053828..25053969,25054059..25054239,25055205..25055343)) /locus_tag="TCM_045537" /note="dbxref frave:gene21327" /codon_start=1 /product="Reticulon family protein" /protein_id="EOY20147.1" /db_xref="TAIR:AT3G10915.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IQ52" /translation="MENSSNTDGEESRNQTISSTSSTTSSGGYRLFGRQGSLHQFLGG GEVADILLWKRWRDSFGVIVVATVAWLIFEQSGLPFLSICSDVLLILIVLLFVRANYA ALRNRQLQTLPELELSEEMVNNAAASFRVKINNVLLMAHDITIGKDFRLFFKVVICLW LLSAIGSYCSFFTLAYIGTILSITIPVFYNKYEERVDKCCGMIHRKFSQHYKIVDESV TNRIPRSLFKEKDV" mobile_element complement(25056013..25056077) /note="source:scaffold_7_CACTA_0795 2974 3038" /mobile_element_type="transposon:TIR/CACTA" gene complement(25056185..25061389) /locus_tag="TCM_045538" /note="dbxref CacaoGD:Thecc1EG045538" mRNA complement(join(25056185..25058439,25058551..25058634, 25059956..25060107,25061275..25061389)) /locus_tag="TCM_045538" /product="MATE efflux family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13861" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019724t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032676001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc615t1" mRNA complement(join(25056771..25058439,25059956..25059983)) /locus_tag="TCM_045538" /product="MATE efflux family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene13861" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019724t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032676001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc631t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc615t1" CDS complement(join(25057051..25058439,25058551..25058634, 25059956..25060096)) /locus_tag="TCM_045538" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019724t1" /codon_start=1 /product="MATE efflux family protein isoform 1" /protein_id="EOY20148.1" /db_xref="Phytozome:GSVIVT01032676001" /db_xref="TAIR:AT2G38510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVH5" /translation="MCSPSECGAASPSDISNGGNKNDYYNSGRAGGRGFLNKFLGRFQ KTKKSFLRSQKTQKSALILRNKLGFLLDRFMVADELISLGKIAFPLLLSGLILHSKSI MSMLFLGYLGNIELAGGSLSMGFANITGYSVIKGLAMGMEPICCQAYGAKKWTVLSQT FKQTLCLLLLAAIPITLLWLNMEPILLSFGQDETITSVAKVFITYSIPELLAQALLHP LRIFIRAQNLIKPLLLSATCAMILHLPISYFLAIYLDLGIRGVALASACNTLNLSLAL LAYLFFSETAIKPWDGQAVTKSYRVWHPLLTLMVPSVLSVCLEWWWYEIMVLLCGLIN NPEASVAAMGILIQTTGVLYVFPNSLSLSLSMRVGQDLGAEAPAQARQTTIIGLIIAM VWGLVAFAFTIAVKDVWGKVYTSEPQVLALTSVVLPILGFCELGNCPQTAACGVLVGS ARPKVGACINFCSFYVVGLPVAAFAAFKLEIGFLGLWYGLAAAQASCMCLMICTLVFT DWKHQAKRAKELTQAAEDQKNELEADLLS" CDS complement(25057051..25058358) /locus_tag="TCM_045538" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019724t1" /codon_start=1 /product="MATE efflux family protein isoform 2" /protein_id="EOY20149.1" /db_xref="Phytozome:GSVIVT01032676001" /db_xref="TAIR:AT2G38510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVH5" /translation="MSMLFLGYLGNIELAGGSLSMGFANITGYSVIKGLAMGMEPICC QAYGAKKWTVLSQTFKQTLCLLLLAAIPITLLWLNMEPILLSFGQDETITSVAKVFIT YSIPELLAQALLHPLRIFIRAQNLIKPLLLSATCAMILHLPISYFLAIYLDLGIRGVA LASACNTLNLSLALLAYLFFSETAIKPWDGQAVTKSYRVWHPLLTLMVPSVLSVCLEW WWYEIMVLLCGLINNPEASVAAMGILIQTTGVLYVFPNSLSLSLSMRVGQDLGAEAPA QARQTTIIGLIIAMVWGLVAFAFTIAVKDVWGKVYTSEPQVLALTSVVLPILGFCELG NCPQTAACGVLVGSARPKVGACINFCSFYVVGLPVAAFAAFKLEIGFLGLWYGLAAAQ ASCMCLMICTLVFTDWKHQAKRAKELTQAAEDQKNELEADLLS" gene 25062096..25065228 /locus_tag="TCM_045539" /note="dbxref CacaoGD:Thecc1EG045539" mRNA join(25062096..25062472,25062996..25063042, 25063129..25063254,25063382..25063438,25063694..25063771, 25064960..25065228) /locus_tag="TCM_045539" /product="Superoxide dismutase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s09270.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400029118" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4885t1" CDS join(25062181..25062472,25062996..25063042, 25063129..25063254,25063382..25063438,25063694..25063771, 25064960..25065052) /locus_tag="TCM_045539" /codon_start=1 /product="Superoxide dismutase" /protein_id="EOY20150.1" /db_xref="Phytozome:PGSC0003DMP400029118" /db_xref="TAIR:AT3G10920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BR41" /translation="MALRSLATRKTLTLGLNSTRLTQSRALQTFSLPDLPYDYGALEP AISGEIMQLHHQKHHQTYITNYNKALEQLHEAIQKGDSSTVVKLQSAIKFNGGGHINH SIFWKNLAPIHEGGGEPPKGSLGWAIDTSFGSLESLIQKMNAEGAALQGSGWVWLGVD KELKKLVIETTANQDPLVTKGPALVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVIDW KYASEVYEKECP" gene complement(25065858..25067535) /locus_tag="TCM_045540" /note="dbxref CacaoGD:Thecc1EG045540" mRNA complement(join(25065858..25066211,25066312..25066384, 25066458..25066549,25066671..25066813,25066914..25067535)) /locus_tag="TCM_045540" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc628t5" mRNA complement(join(25066183..25066384,25066458..25066549, 25066671..25066808,25066914..25067262)) /locus_tag="TCM_045540" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8902t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc628t5; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc419t5_C2" CDS complement(join(25066727..25066808,25066914..25067164)) /locus_tag="TCM_045540" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY20152.1" /translation="MREDETENSGGAASSASYAAPSFLRRRILLLSDSPEVAYLELLD RVYSFKSTDPVDDSHKCGVVPVPCIAVAAYFYFSQCNLTCGGAVESVDCRWRRGRKVM RWKSGRTG" CDS complement(join(25066756..25066813,25066914..25067164)) /locus_tag="TCM_045540" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20151.1" /translation="MREDETENSGGAASSASYAAPSFLRRRILLLSDSPEVAYLELLD RVYSFKSTDPVDDSHKCGVVPVPCIAVAAYFYFSQCNLTWAVEGLLKASIADGGEVGR " mobile_element complement(25069003..25069322) /note="source:CACAO_Helitron_E168_scaffold_5 718 1039" /mobile_element_type="transposon:Helitron" mobile_element complement(25069824..25070527) /note="source:INTACT160_F4_scaffold_7-int 13979 14683" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25070406..25071000) /note="source:CACAO_M_E84908_F12_scaffold_10 2969 3560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25071619..25072103) /note="source:scaffold_1_CACTA_0009 2218 2705" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25072171..25073206) /note="source:CACAO_Helitron_E168_scaffold_5 1 1039" /mobile_element_type="transposon:Helitron" mobile_element complement(25075740..25076652) /note="source:CACAO_Helitron_E242_scaffold_9 222 1132" /mobile_element_type="transposon:Helitron" mobile_element 25076653..25077374 /note="source:INTACT784_F331_scaffold_5-int 1014 1733" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25077345..25079723) /note="source:scaffold_5_CACTA_0585 11970 14370" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25079893..25080003) /note="source:CACAO_M_E178_F2_scaffold_1 2 114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25080004..25080073) /note="source:CACAO_Helitron_E168_scaffold_5 1 70" /mobile_element_type="transposon:Helitron" mobile_element 25087821..25088041 /note="source:scaffold_9_CACTA_0943 5578 5850" /mobile_element_type="transposon:TIR/CACTA" gene 25088460..25090660 /locus_tag="TCM_045541" /note="dbxref CacaoGD:Thecc1EG045541" mRNA join(25088460..25088594,25088698..25088790, 25088898..25088982,25089080..25089213,25090362..25090660) /locus_tag="TCM_045541" /product="40S ribosomal protein S26-2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g40660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042279t1" /inference="similar to AA sequence:Phytozome:Glyma04g39940.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg5105t2" CDS join(25088592..25088594,25088698..25088790, 25088898..25088982,25089080..25089213,25090362..25090433) /locus_tag="TCM_045541" /note="paralog of Thecc1EG042279t1" /codon_start=1 /product="40S ribosomal protein S26-2" /protein_id="EOY20153.1" /db_xref="Phytozome:Glyma04g39940.1" /db_xref="TAIR:AT2G40590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPJ7" /translation="MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKSIKRFLVRNI VEQAAVRDVQEACVYDMYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFI RRRDDMPKPGQPGQAPRAGAGNPARP" gene complement(25090830..25094070) /locus_tag="TCM_045543" /note="dbxref CacaoGD:Thecc1EG045543" mRNA complement(join(25090830..25091516,25091940..25092002, 25092088..25092288,25092498..25092615,25092681..25092881, 25093407..25094070)) /locus_tag="TCM_045543" /product="N2,N2-dimethylguanosine tRNA methyltransferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s09180.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s09180.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7993t4" mRNA complement(join(25090925..25091516,25091606..25091642, 25091940..25092000,25092497..25092597,25092681..25092881, 25093407..25094050)) /locus_tag="TCM_045543" /product="N2,N2-dimethylguanosine tRNA methyltransferase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s09180.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s09180.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc514t1_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7993t4" CDS complement(join(25091412..25091516,25091940..25092002, 25092088..25092288,25092498..25092615,25092681..25092881, 25093407..25094023)) /locus_tag="TCM_045543" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="N2,N2-dimethylguanosine tRNA methyltransferase isoform 1" /protein_id="EOY20154.1" /db_xref="Phytozome:POPTR_0013s09180.1" /db_xref="TAIR:AT3G56330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYL0" /translation="MLTTNPKTLSPSPFIHKTLINPKYSSTSPKFLNFNSLIRCKCNQ VTERGILFDTGETFFRQESAIGRDLGVLSAALYKQSKGQLRVLDAMCGCGIRSLRYLV ESKADFVLANDANESHRRVILENLAQVERFQGEKKRWVVTHCEANRVLTDCYLQRDYF DFIDIDSFGSDSSFFLRAAFSSLKLDGLVYVTSTDGYSSGGHRPFHSLAAYGAYVRPM PYANELGLRILIGGAVREASVLGYHVTPLFSYYSYHGPVFRVLLRMNRGKLPDNSFHI NDRDYGFICYCYRCGNSQAVSWSELGRIRCPCSNSKDAASLVVSGPMWTGPLHSAAYI MEMLNLAEQWGWVGNGAGTDLEKLLKRMVEESDPRLPFGYIKLDEVACRAQTNTPSIR TIMNSLHKEGYAASRSHIASNAIKTDCPMAGCIRIAKILHGC" mRNA complement(join(25091488..25091642,25091940..25092002, 25092088..25092288,25092498..25092597,25092681..25092881, 25093407..25094050)) /locus_tag="TCM_045543" /product="N2,N2-dimethylguanosine tRNA methyltransferase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s09180.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s09180.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7993t4; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7993t4; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc7980t3" CDS complement(join(25091634..25091642,25091940..25092002, 25092088..25092288,25092498..25092597,25092681..25092881, 25093407..25094023)) /locus_tag="TCM_045543" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="N2,N2-dimethylguanosine tRNA methyltransferase isoform 2" /protein_id="EOY20155.1" /db_xref="Phytozome:POPTR_0013s09180.1" /db_xref="TAIR:AT3G56330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYL0" /translation="MLTTNPKTLSPSPFIHKTLINPKYSSTSPKFLNFNSLIRCKCNQ VTERGILFDTGETFFRQESAIGRDLGVLSAALYKQSKGQLRVLDAMCGCGIRSLRYLV ESKADFVLANDANESHRRVILENLAQVERFQGEKKRWVVTHCEANRVLTDCYLQRDYF DFIDIDSFGSDSSFFLRAAFSSLKLDGLVYVTSTDGYSSGGHRPFHSLAAYGAYVRPM PYANELGLRILIGGAVREASVLGYHVTPLFSYYSYHGPVFRVLLRMNRGKLPDNRDYG FICYCYRCGNSQAVSWSELGRIRCPCSNSKDAASLVVSGPMWTGPLHSAAYIMEMLNL AEQWGWVGNGAGTDLEKLLKRMVEESDPRLPFGYIKLDEVACRAQTNTPSIRTIMNSL HKVT" CDS complement(join(25091966..25092000,25092497..25092597, 25092681..25092881,25093407..25094023)) /locus_tag="TCM_045543" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="N2,N2-dimethylguanosine tRNA methyltransferase isoform 3" /protein_id="EOY20156.1" /db_xref="Phytozome:POPTR_0013s09180.1" /db_xref="TAIR:AT3G56330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYL0" /translation="MLTTNPKTLSPSPFIHKTLINPKYSSTSPKFLNFNSLIRCKCNQ VTERGILFDTGETFFRQESAIGRDLGVLSAALYKQSKGQLRVLDAMCGCGIRSLRYLV ESKADFVLANDANESHRRVILENLAQVERFQGEKKRWVVTHCEANRVLTDCYLQRDYF DFIDIDSFGSDSSFFLRAAFSSLKLDGLVYVTSTDGYSSGGHRPFHSLAAYGAYVRPM PYANELGLRILIGGAVREASVLGYHVTPLFSYYSYHGPVFRVLLRMNRGKLPDNRDYG FICYCYRCGNSQAVSWSELGRIRCPCSNSKGHVVHKQILLP" mRNA complement(join(25092087..25092288,25092380..25092597, 25092681..25092881,25093407..25094050)) /locus_tag="TCM_045543" /product="N2,N2-dimethylguanosine tRNA methyltransferase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s09180.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s09180.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc514t5_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7993t4" CDS complement(join(25092492..25092597,25092681..25092881, 25093407..25094023)) /locus_tag="TCM_045543" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="N2,N2-dimethylguanosine tRNA methyltransferase isoform 4" /protein_id="EOY20157.1" /db_xref="Phytozome:POPTR_0013s09180.1" /db_xref="TAIR:AT3G56330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYL0" /translation="MLTTNPKTLSPSPFIHKTLINPKYSSTSPKFLNFNSLIRCKCNQ VTERGILFDTGETFFRQESAIGRDLGVLSAALYKQSKGQLRVLDAMCGCGIRSLRYLV ESKADFVLANDANESHRRVILENLAQVERFQGEKKRWVVTHCEANRVLTDCYLQRDYF DFIDIDSFGSDSSFFLRAAFSSLKLDGLVYVTSTDGYSSGGHRPFHSLAAYGAYVRPM PYANELGLRILIGGAVREASVLGYHVTPLFSYYSYHGPVFRVLLRMNRGKLPDNRDYG FICYCYRCGNSQAVSWSELGRIRCPCSNSKV" gene 25094170..25105507 /locus_tag="TCM_045544" /note="dbxref CacaoGD:Thecc1EG045544" mRNA join(25094170..25094393,25097540..25097843, 25099816..25099998,25101469..25101561,25102211..25102393, 25102473..25102575,25102659..25102844,25103255..25103763, 25103876..25103908,25103988..25104020,25104100..25104132, 25104212..25104244,25104324..25104754,25104845..25105507) /locus_tag="TCM_045544" /product="PAP/OAS1 substrate-binding domain superfamily, putative" /inference="alignment:exonerate- protein:2:ricco:29729.m002351" /inference="similar to AA sequence:ricco:29729.m002351" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7082t2" CDS join(25097553..25097843,25099816..25099998, 25101469..25101561,25102211..25102393,25102473..25102575, 25102659..25102844,25103255..25103763,25103876..25103908, 25103988..25104020,25104100..25104132,25104212..25104244, 25104324..25104754,25104845..25104908) /locus_tag="TCM_045544" /note="dbxref ricco:29729.m002351" /codon_start=1 /product="PAP/OAS1 substrate-binding domain superfamily, putative" /protein_id="EOY20158.1" /db_xref="TAIR:AT3G56320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S4D4" /translation="MEEFQESLSPSTSLSLSSTSSSPILHPSSPSSLSFSSCSISSSQ SHPLSIDAELWLMAEQRIQEILCIIQPALVSEERRKSIIGYFQRLIKGYYGIEVLPFG SVPLKTFLPDGDIDLTALSHRKAEQKELARDICSILQNDRQDSEFLVQDVQYISAQVK IVKCTVNNIPVDISFNQTAGLSALCFLEKVDQFVAKDHLFKCSIILIKAWCYYESRIL GAHHGLISTYALETLILYIINIFHSSLCGPLAVLYKFLDYYSTFDWENYCVSINGPVP LSSPSAVVAESPENDGDEPLLSQDFLRHCREMFSVPMQSLEIGAHAFPIKHLNIVDPL NENNNLGRSVGKGNFYRIRSALSFGAQRLREILMLPGENMGRGLENFFINTLGRNGRG QRPDVQIPVPAFGTGRSEESDLSGDYDGYYNGLIYSHRYHNNDLPATAQPSSVSSSSQ TQKKSTWEALRQFVRCKRNIFYWKGTNVIIPSLSFSHPCAPQLPAAAFGIDKMAKSRG TGTYIPDMTHQSYRDMQSWTNQSYRDVKSWTHQSYRDMQSWTHQSYRDAQSWTHQSHR DTQSWVSTRNPKSATPGLLQNSPKETNANENSLDENSLETDHSGNGGSLDFDFTPEEF PLLPGTERTMTTHQSSQPAVKCPQAENCSGSLPGIKFGNFECSTPMGMHSPLPEQTDS RVRMPTTEKQKQKELCEFNEGRFLVKPLQLEDNDDFPPLLSM" mobile_element 25105737..25106304 /note="source:scaffold_8_CACTA_0855 1771 2384" /mobile_element_type="transposon:TIR/CACTA" gene complement(25106235..25113224) /locus_tag="TCM_045545" /note="dbxref CacaoGD:Thecc1EG045545" mRNA complement(join(25106235..25106667,25106814..25106953, 25107021..25107049,25107372..25107378,25107586..25107635, 25107779..25107869,25108394..25108476,25108580..25108644, 25109534..25109617,25109710..25109775,25109859..25109917, 25110361..25110433,25110558..25110661,25111069..25111103, 25111184..25111240,25111660..25111718,25112419..25112443)) /locus_tag="TCM_045545" /product="Melibiase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007627t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s08450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc406t11; inference alignment:Newbler:10:TSA:cgbaB_g07083t00001" mRNA complement(join(25106246..25106667,25106814..25106954, 25107577..25107635,25107779..25107869,25108394..25108476, 25108580..25108644,25109534..25109617,25109710..25109775, 25109859..25109917,25110361..25110433,25110558..25110661, 25111069..25111103,25111184..25111240,25111660..25111718, 25112419..25112680,25112951..25113224)) /locus_tag="TCM_045545" /product="Melibiase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027241t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s08450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07083t00001" CDS complement(join(25106557..25106667,25106814..25106954, 25107577..25107635,25107779..25107869,25108394..25108476, 25108580..25108644,25109534..25109617,25109710..25109775, 25109859..25109917,25110361..25110433,25110558..25110661, 25111069..25111103,25111184..25111240,25111660..25111718, 25112419..25112657)) /locus_tag="TCM_045545" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG027241t1" /codon_start=1 /product="Melibiase family protein isoform 1" /protein_id="EOY20159.1" /db_xref="Phytozome:POPTR_0019s08450.1" /db_xref="TAIR:AT3G56310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VXZ7" /translation="MGMEKMKKKGVCSVYVLVVLTVWLTDLGIEGRGVSVLEKHGKPS SGFGFGFTKSFNSIYDSSRYGIFQLNNGLALTPQMGWNSWNFFACNITEDLIKETADA LISTGLADLGYVYVNIDDCWSGASRNSEGQLVPDPNTFPSGIKAVADYVHGKGLKLGI YSDAGAFTCQVRPGSLLHETDDAQLFASWGVDYLKYDNCFNLGIDPKKRYPPMRDALN ATGRTIFYSICEWGVEDPALWAHGVGNSWRTTDDINDTWASMTTIADLNDKWASYAGP GGWNDPDMLEVGNGGMTYQEYRAHFSIWALMKAPLLVGCDVRSMTNETFEILSNKEVI AVNQDSLGVQGRKVYATGENDCLQVWAGPLSGNRLVVALWNRCSKAATITAKWEALGL ESSTSVSVRDLWQHEDLTEKAVASFGAKVDSHDCHMYIFTPTTKAHSEI" CDS complement(join(25106879..25106953,25107021..25107049, 25107372..25107378,25107586..25107635,25107779..25107869, 25108394..25108476,25108580..25108644,25109534..25109617, 25109710..25109775,25109859..25109917,25110361..25110433, 25110558..25110661,25111069..25111103,25111184..25111240, 25111660..25111718,25112419..25112423)) /locus_tag="TCM_045545" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007627t1" /codon_start=1 /product="Melibiase family protein isoform 2" /protein_id="EOY20160.1" /db_xref="Phytozome:POPTR_0019s08450.1" /db_xref="TAIR:AT3G56310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VXZ7" /translation="MGWNSWNFFACNITEDLIKETADALISTGLADLGYVYVNIDDCW SGASRNSEGQLVPDPNTFPSGIKAVADYVHGKGLKLGIYSDAGAFTCQVRPGSLLHET DDAQLFASWGVDYLKYDNCFNLGIDPKKRYPPMRDALNATGRTIFYSICEWGVEDPAL WAHGVGNSWRTTDDINDTWASMTTIADLNDKWASYAGPGGWNDPDMLEVGNGGMTYQE YRAHFSIWALMKAPLLVGCDVRSMTNETFEILSNKEVIAVNQDSLGVQGRKVYATGEN DLLHHIVYHIVWKFGQVLCLEIAWSLLSGIDVQKLQL" gene 25116392..25117260 /locus_tag="TCM_045546" /note="dbxref CacaoGD:Thecc1EG045546" mRNA 25116392..25117260 /locus_tag="TCM_045546" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 25116591..25116968 /locus_tag="TCM_045546" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20161.1" /translation="MSLVPLLGPDDGTGSLGSMLRIMGPYFPASLGDLMRVPVWEFLM VTIWSHGRTCCWWWLGSFSCEVVVTTTSSLPSRGRARFKVGSVAACRPCERKPFRSLA EDPEAVEMIKKNTTTAAVISWCC" mobile_element 25119552..25119606 /note="source:CACAO_PIF_E144_scaffold_10 6002 6056" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(25119569..25119618) /note="source:CACAO_M_E73089_F74_scaffold_10 3471 3520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25119619..25119631 /note="source:scaffold_3_CACTA_0377 2421 2468" /mobile_element_type="transposon:TIR/CACTA" gene 25121314..25121851 /locus_tag="TCM_045547" /note="dbxref CacaoGD:Thecc1EG045547" mRNA 25121314..25121851 /locus_tag="TCM_045547" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage" CDS 25121332..25121622 /locus_tag="TCM_045547" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20162.1" /translation="MQKLSVCAMAKREQMIKPNFLLLAVLVLFMMFQCKVASSSRFSW SCDPACQMELTRTRKLLDMQQEYSGDVPSPADYDYNDFYRRQGDVPSPGVGH" gene 25123809..25134354 /locus_tag="TCM_045548" /note="dbxref CacaoGD:Thecc1EG045548" mRNA join(25123809..25124352,25124703..25125271, 25125456..25125608,25127145..25127249,25127479..25127713, 25127795..25128040,25128125..25128178,25129312..25129572, 25130133..25130185,25130298..25130415,25130695..25130949, 25131175..25132431) /locus_tag="TCM_045548" /product="Potassium transporter 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21341" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016852t1" /inference="similar to AA sequence:ricco:29729.m002348" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7297t2" mRNA join(25125400..25125608,25127145..25127249, 25127479..25127713,25127795..25128040,25128125..25128178, 25129312..25129572,25130133..25130185,25130298..25130415, 25130695..25130949,25131175..25133082,25133207..25133270, 25133845..25134354) /locus_tag="TCM_045548" /product="Potassium transporter 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21341" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016852t1" /inference="similar to AA sequence:ricco:29729.m002348" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7297t1; alternateUTRof:Thecc1EG045548t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7297t2" mRNA join(25125441..25125608,25127187..25127249, 25127479..25127713,25127795..25128040,25128125..25128178, 25129312..25129572,25130133..25130185,25130298..25130415, 25130695..25130949,25131175..25133082,25133207..25133270, 25133845..25134354) /locus_tag="TCM_045548" /product="Potassium transporter 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21341" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016852t1" /inference="similar to AA sequence:ricco:29729.m002348" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7297t2; alternateUTRof:Thecc1EG045548t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7297t2" mRNA join(25126657..25126958,25127145..25127249, 25127479..25127713,25127795..25128040,25128125..25128178, 25129312..25129572,25130133..25130185,25130298..25130415, 25130695..25130949,25131175..25132942) /locus_tag="TCM_045548" /product="Potassium transporter 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21341" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016852t1" /inference="similar to AA sequence:ricco:29729.m002348" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc6t10; alternateUTRof:Thecc1EG045548t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7297t2" mRNA join(25126831..25127249,25127479..25127713, 25127795..25128040,25128125..25128178,25129312..25129572, 25130133..25130185,25130298..25130415,25130695..25130949, 25131175..25133082,25133207..25133270,25133845..25134354) /locus_tag="TCM_045548" /product="Potassium transporter 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21341" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016852t1" /inference="similar to AA sequence:ricco:29729.m002348" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7297t5; alternateUTRof:Thecc1EG045548t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7297t2" mRNA join(25126910..25127249,25127479..25127713, 25127795..25128040,25128125..25128178,25129312..25129572, 25130130..25130185,25130298..25130415,25130695..25130949, 25131175..25133082,25133207..25133270,25133845..25134354) /locus_tag="TCM_045548" /product="Potassium transporter 2 isoform 5" /inference="alignment:exonerate-protein:2:frave:gene21341" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016852t1" /inference="similar to AA sequence:ricco:29729.m002348" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7297t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7297t2" CDS join(25127211..25127249,25127479..25127713, 25127795..25128040,25128125..25128178,25129312..25129572, 25130130..25130185,25130298..25130415,25130695..25130949, 25131175..25132295) /locus_tag="TCM_045548" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29729.m002348; paralog of Thecc1EG016852t1" /codon_start=1 /product="Potassium transporter 2 isoform 5" /protein_id="EOY20167.1" /db_xref="TAIR:AT2G40540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O22881" /translation="MDLEFGKTLDASKKGSWKTASLLAYQSLGVVYGDLSTSPLYVYK STFAEDIQHSETNEEIYGVLSFVFWTLTLLPLFKYVFVVLRADDNGEGGTFALYSLIC RHARVSLLPNRQVADEALSTYKLEHPPEKKSSSRVKMYLEKHKVLHTALLILVLLGTC MVIGDGVLTPAISVFSAVSGLELSMSKEHHQYAVIPITCFILVCLFALQHYGTHRVGF FFAPIVLTWLLCISALGLYNIIHWNPHVYQALSPYYMFKFLKKTRKGGWMSLGGILLC ITAGSEAMFADLGHFSYAAIQTAFTFLVYPALILAYMGQAAYLSQHHPTSYQISFYVS VPESVRWPVLVVAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVIHTSDKIHGQIY IPEINWVLMILCIAVTIGFRDTKHMGNASGLAVMTVMLVTTCLTSLVIILCWNKPPLV ALSFLLFFGSVELLYFSASLTKFTEGAWLPILLALFLMTIMFVWHYATIKKYEFDLHN KVSLEWLLALGPSLGIVRVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRVLVFVCVKS VPVPYVPLAERYLVGRVGPAAHRSYRCIVRYGYRDVHQEVDSFESELIAKLADFIRYD WYRRQQTNPYTDDDASHSNESSSECRLAVIGTVAFSGTPGYEIEESVQPESVSGGFST VESVTDVIEMEPVGAVQRRVRFAIDDDSESDTRTDMEVHLREELEDLLAAQEAGTAFI LGHSHVRAKQGSSVLKRLAINFGYNFLRRNCRGPDVTLKVPPVSLLEVGMVYVV" CDS join(25127211..25127249,25127479..25127713, 25127795..25128040,25128125..25128178,25129312..25129572, 25130133..25130185,25130298..25130415,25130695..25130949, 25131175..25132295) /locus_tag="TCM_045548" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29729.m002348; paralog of Thecc1EG016852t1" /codon_start=1 /product="Potassium transporter 2 isoform 1" /protein_id="EOY20163.1" /db_xref="TAIR:AT2G40540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O22881" /translation="MDLEFGKTLDASKKGSWKTASLLAYQSLGVVYGDLSTSPLYVYK STFAEDIQHSETNEEIYGVLSFVFWTLTLLPLFKYVFVVLRADDNGEGGTFALYSLIC RHARVSLLPNRQVADEALSTYKLEHPPEKKSSSRVKMYLEKHKVLHTALLILVLLGTC MVIGDGVLTPAISVFSAVSGLELSMSKEHHQYAVIPITCFILVCLFALQHYGTHRVGF FFAPIVLTWLLCISALGLYNIIHWNPHVYQALSPYYMFKFLKKTRKGGWMSLGGILLC ITGSEAMFADLGHFSYAAIQTAFTFLVYPALILAYMGQAAYLSQHHPTSYQISFYVSV PESVRWPVLVVAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVIHTSDKIHGQIYI PEINWVLMILCIAVTIGFRDTKHMGNASGLAVMTVMLVTTCLTSLVIILCWNKPPLVA LSFLLFFGSVELLYFSASLTKFTEGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNK VSLEWLLALGPSLGIVRVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRVLVFVCVKSV PVPYVPLAERYLVGRVGPAAHRSYRCIVRYGYRDVHQEVDSFESELIAKLADFIRYDW YRRQQTNPYTDDDASHSNESSSECRLAVIGTVAFSGTPGYEIEESVQPESVSGGFSTV ESVTDVIEMEPVGAVQRRVRFAIDDDSESDTRTDMEVHLREELEDLLAAQEAGTAFIL GHSHVRAKQGSSVLKRLAINFGYNFLRRNCRGPDVTLKVPPVSLLEVGMVYVV" CDS join(25127211..25127249,25127479..25127713, 25127795..25128040,25128125..25128178,25129312..25129572, 25130133..25130185,25130298..25130415,25130695..25130949, 25131175..25132295) /locus_tag="TCM_045548" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002348; paralog of Thecc1EG016852t1" /codon_start=1 /product="Potassium transporter 2 isoform 1" /protein_id="EOY20164.1" /db_xref="TAIR:AT2G40540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O22881" /translation="MDLEFGKTLDASKKGSWKTASLLAYQSLGVVYGDLSTSPLYVYK STFAEDIQHSETNEEIYGVLSFVFWTLTLLPLFKYVFVVLRADDNGEGGTFALYSLIC RHARVSLLPNRQVADEALSTYKLEHPPEKKSSSRVKMYLEKHKVLHTALLILVLLGTC MVIGDGVLTPAISVFSAVSGLELSMSKEHHQYAVIPITCFILVCLFALQHYGTHRVGF FFAPIVLTWLLCISALGLYNIIHWNPHVYQALSPYYMFKFLKKTRKGGWMSLGGILLC ITGSEAMFADLGHFSYAAIQTAFTFLVYPALILAYMGQAAYLSQHHPTSYQISFYVSV PESVRWPVLVVAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVIHTSDKIHGQIYI PEINWVLMILCIAVTIGFRDTKHMGNASGLAVMTVMLVTTCLTSLVIILCWNKPPLVA LSFLLFFGSVELLYFSASLTKFTEGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNK VSLEWLLALGPSLGIVRVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRVLVFVCVKSV PVPYVPLAERYLVGRVGPAAHRSYRCIVRYGYRDVHQEVDSFESELIAKLADFIRYDW YRRQQTNPYTDDDASHSNESSSECRLAVIGTVAFSGTPGYEIEESVQPESVSGGFSTV ESVTDVIEMEPVGAVQRRVRFAIDDDSESDTRTDMEVHLREELEDLLAAQEAGTAFIL GHSHVRAKQGSSVLKRLAINFGYNFLRRNCRGPDVTLKVPPVSLLEVGMVYVV" CDS join(25127211..25127249,25127479..25127713, 25127795..25128040,25128125..25128178,25129312..25129572, 25130133..25130185,25130298..25130415,25130695..25130949, 25131175..25132295) /locus_tag="TCM_045548" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29729.m002348; paralog of Thecc1EG016852t1" /codon_start=1 /product="Potassium transporter 2 isoform 1" /protein_id="EOY20165.1" /db_xref="TAIR:AT2G40540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O22881" /translation="MDLEFGKTLDASKKGSWKTASLLAYQSLGVVYGDLSTSPLYVYK STFAEDIQHSETNEEIYGVLSFVFWTLTLLPLFKYVFVVLRADDNGEGGTFALYSLIC RHARVSLLPNRQVADEALSTYKLEHPPEKKSSSRVKMYLEKHKVLHTALLILVLLGTC MVIGDGVLTPAISVFSAVSGLELSMSKEHHQYAVIPITCFILVCLFALQHYGTHRVGF FFAPIVLTWLLCISALGLYNIIHWNPHVYQALSPYYMFKFLKKTRKGGWMSLGGILLC ITGSEAMFADLGHFSYAAIQTAFTFLVYPALILAYMGQAAYLSQHHPTSYQISFYVSV PESVRWPVLVVAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVIHTSDKIHGQIYI PEINWVLMILCIAVTIGFRDTKHMGNASGLAVMTVMLVTTCLTSLVIILCWNKPPLVA LSFLLFFGSVELLYFSASLTKFTEGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNK VSLEWLLALGPSLGIVRVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRVLVFVCVKSV PVPYVPLAERYLVGRVGPAAHRSYRCIVRYGYRDVHQEVDSFESELIAKLADFIRYDW YRRQQTNPYTDDDASHSNESSSECRLAVIGTVAFSGTPGYEIEESVQPESVSGGFSTV ESVTDVIEMEPVGAVQRRVRFAIDDDSESDTRTDMEVHLREELEDLLAAQEAGTAFIL GHSHVRAKQGSSVLKRLAINFGYNFLRRNCRGPDVTLKVPPVSLLEVGMVYVV" CDS join(25127211..25127249,25127479..25127713, 25127795..25128040,25128125..25128178,25129312..25129572, 25130133..25130185,25130298..25130415,25130695..25130949, 25131175..25132295) /locus_tag="TCM_045548" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29729.m002348; paralog of Thecc1EG016852t1" /codon_start=1 /product="Potassium transporter 2 isoform 1" /protein_id="EOY20166.1" /db_xref="TAIR:AT2G40540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O22881" /translation="MDLEFGKTLDASKKGSWKTASLLAYQSLGVVYGDLSTSPLYVYK STFAEDIQHSETNEEIYGVLSFVFWTLTLLPLFKYVFVVLRADDNGEGGTFALYSLIC RHARVSLLPNRQVADEALSTYKLEHPPEKKSSSRVKMYLEKHKVLHTALLILVLLGTC MVIGDGVLTPAISVFSAVSGLELSMSKEHHQYAVIPITCFILVCLFALQHYGTHRVGF FFAPIVLTWLLCISALGLYNIIHWNPHVYQALSPYYMFKFLKKTRKGGWMSLGGILLC ITGSEAMFADLGHFSYAAIQTAFTFLVYPALILAYMGQAAYLSQHHPTSYQISFYVSV PESVRWPVLVVAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVIHTSDKIHGQIYI PEINWVLMILCIAVTIGFRDTKHMGNASGLAVMTVMLVTTCLTSLVIILCWNKPPLVA LSFLLFFGSVELLYFSASLTKFTEGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNK VSLEWLLALGPSLGIVRVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRVLVFVCVKSV PVPYVPLAERYLVGRVGPAAHRSYRCIVRYGYRDVHQEVDSFESELIAKLADFIRYDW YRRQQTNPYTDDDASHSNESSSECRLAVIGTVAFSGTPGYEIEESVQPESVSGGFSTV ESVTDVIEMEPVGAVQRRVRFAIDDDSESDTRTDMEVHLREELEDLLAAQEAGTAFIL GHSHVRAKQGSSVLKRLAINFGYNFLRRNCRGPDVTLKVPPVSLLEVGMVYVV" CDS join(25127211..25127249,25127479..25127713, 25127795..25128040,25128125..25128178,25129312..25129572, 25130133..25130185,25130298..25130415,25130695..25130949, 25131175..25132295) /locus_tag="TCM_045548" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29729.m002348; paralog of Thecc1EG016852t1" /codon_start=1 /product="Potassium transporter 2 isoform 1" /protein_id="EOY20168.1" /db_xref="TAIR:AT2G40540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O22881" /translation="MDLEFGKTLDASKKGSWKTASLLAYQSLGVVYGDLSTSPLYVYK STFAEDIQHSETNEEIYGVLSFVFWTLTLLPLFKYVFVVLRADDNGEGGTFALYSLIC RHARVSLLPNRQVADEALSTYKLEHPPEKKSSSRVKMYLEKHKVLHTALLILVLLGTC MVIGDGVLTPAISVFSAVSGLELSMSKEHHQYAVIPITCFILVCLFALQHYGTHRVGF FFAPIVLTWLLCISALGLYNIIHWNPHVYQALSPYYMFKFLKKTRKGGWMSLGGILLC ITGSEAMFADLGHFSYAAIQTAFTFLVYPALILAYMGQAAYLSQHHPTSYQISFYVSV PESVRWPVLVVAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVIHTSDKIHGQIYI PEINWVLMILCIAVTIGFRDTKHMGNASGLAVMTVMLVTTCLTSLVIILCWNKPPLVA LSFLLFFGSVELLYFSASLTKFTEGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNK VSLEWLLALGPSLGIVRVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRVLVFVCVKSV PVPYVPLAERYLVGRVGPAAHRSYRCIVRYGYRDVHQEVDSFESELIAKLADFIRYDW YRRQQTNPYTDDDASHSNESSSECRLAVIGTVAFSGTPGYEIEESVQPESVSGGFSTV ESVTDVIEMEPVGAVQRRVRFAIDDDSESDTRTDMEVHLREELEDLLAAQEAGTAFIL GHSHVRAKQGSSVLKRLAINFGYNFLRRNCRGPDVTLKVPPVSLLEVGMVYVV" mRNA join(25129315..25129572,25130133..25130185, 25130298..25130415,25130695..25130949,25131175..25132513) /locus_tag="TCM_045548" /product="Potassium transporter 2 isoform 7" /inference="alignment:exonerate-protein:2:frave:gene21341" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016852t1" /inference="similar to AA sequence:ricco:29729.m002348" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04685t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7297t2" CDS join(25129500..25129572,25130133..25130185, 25130298..25130415,25130695..25130949,25131175..25132295) /locus_tag="TCM_045548" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29729.m002348; paralog of Thecc1EG016852t1" /codon_start=1 /product="Potassium transporter 2 isoform 7" /protein_id="EOY20169.1" /db_xref="TAIR:AT2G40540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O22881" /translation="MFKFLKKTRKGGWMSLGGILLCITGSEAMFADLGHFSYAAIQTA FTFLVYPALILAYMGQAAYLSQHHPTSYQISFYVSVPESVRWPVLVVAILASVVGSQA IISGTFSIINQSQSLGCFPRVKVIHTSDKIHGQIYIPEINWVLMILCIAVTIGFRDTK HMGNASGLAVMTVMLVTTCLTSLVIILCWNKPPLVALSFLLFFGSVELLYFSASLTKF TEGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNKVSLEWLLALGPSLGIVRVPGIG LVFTDLTSGIPANFSRFVTNLPAFHRVLVFVCVKSVPVPYVPLAERYLVGRVGPAAHR SYRCIVRYGYRDVHQEVDSFESELIAKLADFIRYDWYRRQQTNPYTDDDASHSNESSS ECRLAVIGTVAFSGTPGYEIEESVQPESVSGGFSTVESVTDVIEMEPVGAVQRRVRFA IDDDSESDTRTDMEVHLREELEDLLAAQEAGTAFILGHSHVRAKQGSSVLKRLAINFG YNFLRRNCRGPDVTLKVPPVSLLEVGMVYVV" gene 25132715..25134050 /locus_tag="TCM_045551" /note="dbxref CacaoGD:Thecc1EG045551" mRNA join(25132715..25133082,25133207..25133270, 25133845..25134050) /locus_tag="TCM_045551" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene21341" /inference="similar to AA sequence:Phytozome:POPTR_0019s08420.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10310t00001" CDS join(25132795..25133082,25133207..25133270, 25133845..25134014) /locus_tag="TCM_045551" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20170.1" /db_xref="Phytozome:POPTR_0019s08420.1" /db_xref="TAIR:AT3G56290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IQ43" /translation="MGLRALPLSPSQNSVPPHVGLPQHFSTHRFSRSSTFRVSAKKEN GEKEEPKKSKQSLFSSVTEALDFSQVRSVKDAELLGEAREATKSGGRMSREQYGALRR KIGGTYKDFFKSYVEVDGEYVEEGWVDKRCKVCKKDTRGEPRQIDNFGRYVHVACLEK SNSGNFFTRLFSR" gene 25135204..25141174 /locus_tag="TCM_045552" /note="dbxref CacaoGD:Thecc1EG045552" mRNA join(25135204..25135811,25135942..25136049, 25136331..25136456,25136857..25136901,25137726..25137845, 25137965..25138117,25138515..25138589,25138717..25138830, 25139030..25139232,25139411..25139546,25139766..25139993, 25140403..25140470,25140573..25141174) /locus_tag="TCM_045552" /product="E2F target gene 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08400.1" /inference="similar to AA sequence:ricco:29729.m002346" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04540t00001" CDS join(25135524..25135811,25135942..25136049, 25136331..25136456,25136857..25136901,25137726..25137845, 25137965..25138117,25138515..25138589,25138717..25138830, 25139030..25139232,25139411..25139546,25139766..25139993, 25140403..25140470,25140573..25140687) /locus_tag="TCM_045552" /note="dbxref ricco:29729.m002346" /codon_start=1 /product="E2F target gene 1" /protein_id="EOY20171.1" /db_xref="TAIR:AT2G40550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q501D5" /translation="MGGPPYDCVANPLGAVRLTFEKAIGSGTQTHPSAFDGKDWGALD LFRHFLFQESGLSQVPILNPKTMRWVQPYTLVRYRGMIQDMLGNEIYVGAYKDGNLWR TNKFMDISQYPMGSSPDMCVWERRLLYCVPVPGQSSWTETSCEMDLNQGMDQSSQNRG KRRRMDDEDDPMDVVPDDEIKSSPTTKKMREDGFPSSSPESRDSKTGSSCTSMATFQY VDKDYLPCLVKIYDCPESELKLNDVVEFIGVLTFDSELALEKDDELSNSFYDDALVYL PPNKVPRLHCIIHRKLAVHDFLQGFPIMEPKPHLVKEIREALFRHLTVVLGNDGVAAH FMLLHLLSKVHARADDVAVGKLSLNLIGLSKESVSVFGTRLSQAVKNLLPFTHCIPLT LEYLNTASLAPKKDYQTNRLIPGVLQLPEGSHLMVDETQLESGTLNSNGIENTKLLKN LMEFQKVEYDFQYYKMEMAADVQLLIFSEGKSNIVPADVVIPFQPSSLGSSEIPVAEA VEAWRWYLATVRSLPHSIGSEMQKEVEDDLVAARQADRSLGSQDFNRWLTMARLVSTS FGETSLSMEHWQMVKELERLRMERLK" gene complement(25140429..25151292) /locus_tag="TCM_045553" /note="dbxref CacaoGD:Thecc1EG045553" mRNA complement(join(25140429..25141732,25142121..25142387, 25142548..25142657,25142924..25142997,25143697..25143766, 25143858..25143957,25144084..25144159,25144342..25144416, 25144609..25144662,25145311..25145400,25145528..25145644, 25145790..25145900,25145996..25146135,25147071..25147152, 25147343..25147422,25147954..25148062,25148632..25148754, 25149711..25149783,25149992..25150143,25150603..25150701, 25150859..25151081)) /locus_tag="TCM_045553" /product="Kinase family protein with ARM repeat domain isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s09440.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s09440.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7265t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7265t3" mRNA complement(join(25140429..25141735,25142121..25142387, 25142548..25142657,25142924..25142997,25143697..25143766, 25143858..25143957,25144084..25144159,25144342..25144416, 25144609..25144662,25145311..25145400,25145528..25145644, 25145790..25145900,25145996..25146135,25147071..25147152, 25147343..25147422,25147954..25148062,25148632..25148754, 25149711..25149783,25149992..25150143,25150603..25150701, 25150859..25151081)) /locus_tag="TCM_045553" /product="Kinase family protein with ARM repeat domain isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s09440.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s09440.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b043932t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7265t3" CDS complement(join(25141452..25141732,25142121..25142387, 25142548..25142657,25142924..25142997,25143697..25143766, 25143858..25143957,25144084..25144159,25144342..25144416, 25144609..25144662,25145311..25145400,25145528..25145644, 25145790..25145900,25145996..25146135,25147071..25147152, 25147343..25147422,25147954..25148062,25148632..25148754, 25149711..25149783,25149992..25150143,25150603..25150701, 25150859..25150984)) /locus_tag="TCM_045553" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Kinase family protein with ARM repeat domain isoform 1" /protein_id="EOY20172.1" /db_xref="Phytozome:POPTR_0013s09440.1" /db_xref="TAIR:AT2G40730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC35" /translation="MFKFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWSHSRGTSKDD GSSVSIFSLSGSNPQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEVEALDGSSTKFTI YIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASV VVTQTLDWKLHAFDVLSEYDGGNESASGPMLQYEWLVGSQYKPMELAKSDWVAIRKSP PWAIDSWGLGCLIYEIFSGVKLGKTEELRNTASIPKSLLPDYQRLLSSMPSRRLNTSK LIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLA SSLEFGSAAAPALTALLKMGSWLSAEEFTLKVLPTIVKLFASNDRAIRVALLQHIDQF GESLSNQVVDEQVYPHVATGFADTSAFLRELTLKSMLVLAPKLSQRTMSGSLLKYLSK LQVDEEPAIRTNTTILLGNIASYLNEGTRKRVLINAFTVRALRDTFAPARGAGVMALC ATSSYYDITEIATRILPNVVVLTIDPDSDVRSKSFQAVDQFLQLVKQYNEKSNAGDAA GTTSLGISSMQGNASLLGWAMSSLTLKGKPSDQAPVAAANSVTPATTTTSTASSGLIE TPSTEPVHRVSSSTDFADQPMPPSPTSTDGWGEIENGIHEEEESEKDGWDDIEPLEEP KPSPALANIQAAQKRPVSQPVSQPKPQAKSLRPKSTVKVTKDEDDDLWGSIAAPPPKS ASKPLNVKTAGAVDDDDPWAAIAAPPPTTKAKPLSAGRGRGAKPAAPKLGAQRINRTS SSGM" CDS complement(join(25141452..25141735,25142121..25142387, 25142548..25142657,25142924..25142997,25143697..25143766, 25143858..25143957,25144084..25144159,25144342..25144416, 25144609..25144662,25145311..25145400,25145528..25145644, 25145790..25145900,25145996..25146135,25147071..25147152, 25147343..25147422,25147954..25148062,25148632..25148754, 25149711..25149783,25149992..25150143,25150603..25150701, 25150859..25150984)) /locus_tag="TCM_045553" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kinase family protein with ARM repeat domain isoform 2" /protein_id="EOY20173.1" /db_xref="Phytozome:POPTR_0013s09440.1" /db_xref="TAIR:AT2G40730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC35" /translation="MFKFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWSHSRGTSKDD GSSVSIFSLSGSNPQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEVEALDGSSTKFTI YIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASV VVTQTLDWKLHAFDVLSEYDGGNESASGPMLQYEWLVGSQYKPMELAKSDWVAIRKSP PWAIDSWGLGCLIYEIFSGVKLGKTEELRNTASIPKSLLPDYQRLLSSMPSRRLNTSK LIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLA SSLEFGSAAAPALTALLKMGSWLSAEEFTLKVLPTIVKLFASNDRAIRVALLQHIDQF GESLSNQVVDEQVYPHVATGFADTSAFLRELTLKSMLVLAPKLSQRTMSGSLLKYLSK LQVDEEPAIRTNTTILLGNIASYLNEGTRKRVLINAFTVRALRDTFAPARGAGVMALC ATSSYYDITEIATRILPNVVVLTIDPDSDVRSKSFQAVDQFLQLVKQYNEKSNAGDAA GTTSLGISSMQGNASLLGWAMSSLTLKGKPSDQAPVAAANSVTPATTTTSTASSGLIE TPSTEPVHRVSSSTDFADQPMPPSPTSTDGWGEIENGIHEEEESEKDGWDDIEPLEEP KPSPALANIQAAQKRPVSQPVSQPKPQAAKSLRPKSTVKVTKDEDDDLWGSIAAPPPK SASKPLNVKTAGAVDDDDPWAAIAAPPPTTKAKPLSAGRGRGAKPAAPKLGAQRINRT SSSGM" mRNA complement(join(25141712..25141735,25142121..25142387, 25142548..25142997,25143697..25143766,25143858..25143957, 25144084..25144159,25144342..25144416,25144609..25144662, 25145311..25145400,25145528..25145644,25145790..25145900, 25145996..25146135,25147071..25147152,25147343..25147422, 25147954..25148062,25148632..25148754,25149711..25149783, 25149992..25150143,25150603..25150701,25150859..25151292)) /locus_tag="TCM_045553" /product="Kinase family protein with ARM repeat domain isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s09440.1" /inference="similar to AA sequence:Phytozome:GSVIVT01032663001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc298t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7265t3" CDS complement(join(25142920..25142997,25143697..25143766, 25143858..25143957,25144084..25144159,25144342..25144416, 25144609..25144662,25145311..25145400,25145528..25145644, 25145790..25145900,25145996..25146135,25147071..25147152, 25147343..25147422,25147954..25148062,25148632..25148754, 25149711..25149783,25149992..25150143,25150603..25150701, 25150859..25150984)) /locus_tag="TCM_045553" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Kinase family protein with ARM repeat domain isoform 3" /protein_id="EOY20174.1" /db_xref="Phytozome:GSVIVT01032663001" /db_xref="TAIR:AT2G40730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC35" /translation="MFKFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWSHSRGTSKDD GSSVSIFSLSGSNPQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEVEALDGSSTKFTI YIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASV VVTQTLDWKLHAFDVLSEYDGGNESASGPMLQYEWLVGSQYKPMELAKSDWVAIRKSP PWAIDSWGLGCLIYEIFSGVKLGKTEELRNTASIPKSLLPDYQRLLSSMPSRRLNTSK LIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLA SSLEFGSAAAPALTALLKMGSWLSAEEFTLKVLPTIVKLFASNDRAIRVALLQHIDQF GESLSNQVVDEQVYPHVATGFADTSAFLRELTLKSMLVLAPKLSQRTMSGSLLKYLSK LQVDEEPAIRTNTTILLGNIASYLNEGTRKRVLINAFTVRALRDTFAPARGAGVMALC ATSSYYDITEIATRILPNVVVLTIDPDSDVRSKSFQAVDQFLQLVKQYNEKSNAGDAA GTTSLGISSMQGNASLLG" gene complement(25151751..25154909) /locus_tag="TCM_045554" /note="dbxref CacaoGD:Thecc1EG045554" mRNA complement(join(25151751..25152618,25153444..25153577, 25153701..25154909)) /locus_tag="TCM_045554" /product="Cinnamate-4-hydroxylase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s15380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042294t1" /inference="similar to AA sequence:frave:gene28093" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03566t00001" CDS complement(join(25152020..25152618,25153444..25153577, 25153701..25154485)) /locus_tag="TCM_045554" /note="dbxref frave:gene28093; paralog of Thecc1EG042294t1" /codon_start=1 /product="Cinnamate-4-hydroxylase" /protein_id="EOY20175.1" /db_xref="TAIR:AT2G30490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P92994" /translation="MDLLLLEKALVSLFITVILAILISKLRSKRFRLPPGPIPVPVFG NWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRT RNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWEDEVARVVED VRKNPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESEDDPLFVKLKALNGERSRLAQ SFEYNYGDFIPILRPFLRGYLKLCKEVKEMRLQLFKDYFLEERKNLASTTISDNNALK CAIDHILDAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQQKLRN EIDTVLGPGVPVTEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDIPA ESKVLVNAWWLANNPAKWKNPEEFRPERFFEEEAKVEANGNDFRYLPFGVGRRSCPGI ILALPILGITLGRLVQNFELLPPPGQAKLDTSEKGGQFSLHILKHSTIVAKPRVF" mobile_element complement(25152189..25152225) /note="source:scaffold_7_CACTA_0776 4880 4916" /mobile_element_type="transposon:TIR/CACTA" gene 25156194..25159321 /locus_tag="TCM_045555" /note="dbxref CacaoGD:Thecc1EG045555" mRNA join(25156194..25157301,25157528..25157662, 25158777..25159321) /locus_tag="TCM_045555" /product="WRKY DNA-binding protein 55, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s09460.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s09460.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc830t1" CDS join(25156781..25157301,25157528..25157662, 25158777..25159254) /locus_tag="TCM_045555" /codon_start=1 /product="WRKY DNA-binding protein 55, putative" /protein_id="EOY20176.1" /db_xref="Phytozome:POPTR_0013s09460.1" /db_xref="TAIR:AT2G40740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S4B3" /translation="MVKSETDKAKRKRPDQTMEETFSLMLHGCKLAKDLESNLGNLAN QPEILSKSCDDIVKVFAAAKERLNADQDPALFTQLLRQSPSSSQQPQQSTDPSLQEWL KYGVITQAMDMIQQQILAGKAPLETNEMGGKNLLEGSASAPLKGSVGGEIQAMELSDS GRGSSSSSQRPRRSRKDDEEKCTMTVPAPQMGNTDLPPEDNFTWRKYGQKEILGSRYP RAYYRCTHQKLYNCPAKKQVQRLDNDFYTFEVTYIGQHTCHMSSTAPSIPPPPPLETG TQDQIMTQAMVSQPTPASSSSVPLGRWLSMEFTSLASASCGSGSGGAGGSTATARYGR EVDYPVVADMADVMFNSGSSSSNSMEFIFPSMEDKWEAGDKKN" gene complement(25159496..25164739) /locus_tag="TCM_045556" /note="dbxref CacaoGD:Thecc1EG045556" mRNA complement(join(25159496..25159571,25162812..25163563, 25163924..25164025,25164156..25164739)) /locus_tag="TCM_045556" /product="WRKY DNA-binding protein 70, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s09470.1" /inference="similar to AA sequence:ricco:29729.m002369" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05826t00001" mobile_element complement(25160002..25160039) /note="source:CACAO_on_S_E58_scaffold_2 278 315" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25160786..25160865) /note="source:scaffold_9_CACTA_0946 17949 18024" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(25162637..25163560,25163924..25164025, 25164156..25164665)) /locus_tag="TCM_045556" /product="WRKY DNA-binding protein 70, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s09470.1" /inference="similar to AA sequence:ricco:29729.m002369" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc960t1_C2; inference alignment:Newbler:10:TSA:cgbaP1_g05826t00001" CDS complement(join(25163128..25163560,25163924..25164025, 25164156..25164505)) /locus_tag="TCM_045556" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002369" /codon_start=1 /product="WRKY DNA-binding protein 70, putative isoform 2" /protein_id="EOY20178.1" /db_xref="TAIR:AT3G56400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I8F0" /translation="MGTTLFPCPERLSSDKKRVIQELVHGQECATQLQILFHKPSEER GQLTAKELVQKILRSFNETISVLSSCDSAQVSRNQATNSNDDSPCCVDRRSEDSSESR KRPSSKDRRGCYKRKRAANTWTVISAAMEDGHAWRKYGQKEILNAKHPSYFRCTRKYD QGCRATKQVQRMEDDSQMFQTVYIGSHTCRDSSKAPQIITDHSEPWKSYNMVTSGDSK ISSKQQHHHHHCLNPSPTTPTVKQESKEETTASDLTDWDSNVWKDIIGLSGFEIMDLQ IKPVEFQSDFTFDESEFV" CDS complement(join(25163128..25163563,25163924..25164025, 25164156..25164505)) /locus_tag="TCM_045556" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29729.m002369" /codon_start=1 /product="WRKY DNA-binding protein 70, putative isoform 1" /protein_id="EOY20177.1" /db_xref="TAIR:AT3G56400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I8F0" /translation="MGTTLFPCPERLSSDKKRVIQELVHGQECATQLQILFHKPSEER GQLTAKELVQKILRSFNETISVLSSCDSAQVSRNQATNSNDDSPCCVDRRSEDSSESR KRPSSKDRRGCYKRKRAANTWTVISAAMEDGHAWRKYGQKEILNAKHPRSYFRCTRKY DQGCRATKQVQRMEDDSQMFQTVYIGSHTCRDSSKAPQIITDHSEPWKSYNMVTSGDS KISSKQQHHHHHCLNPSPTTPTVKQESKEETTASDLTDWDSNVWKDIIGLSGFEIMDL QIKPVEFQSDFTFDESEFV" gene 25165014..25170612 /locus_tag="TCM_045558" /note="dbxref CacaoGD:Thecc1EG045558" mRNA join(25165014..25165327,25166943..25167406, 25167879..25168130,25168238..25168336,25169200..25169493, 25169709..25170612) /locus_tag="TCM_045558" /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08750.1" /inference="similar to AA sequence:frave:gene21366" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc116t11" mobile_element complement(25165235..25165345) /note="source:scaffold_1_CACTA_0011 7435 7500" /mobile_element_type="transposon:TIR/CACTA" mRNA join(25167017..25167406,25167879..25168130, 25168238..25168336,25169200..25169264,25169708..25170499) /locus_tag="TCM_045558" /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08750.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s08750.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7665t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc116t11; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc20607t1" CDS join(25167047..25167406,25167879..25168130, 25168238..25168336,25169200..25169493,25169709..25170086) /locus_tag="TCM_045558" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene21366" /codon_start=1 /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 1" /protein_id="EOY20179.1" /db_xref="TAIR:AT2G40760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1JPN0" /translation="MLRCRPPLSLALRMLSSSSHTSNPNPIFHLPCTSRPTSGLPLKA RLSNSCSSDRRMTLSKCFTGAAADPIPVSSSGKPHCCQNPEEPDSDSLVVVSFYRFAD FPDHADLRKPLKKLCEDLRVSGGIILAPEGINGSICGTRESVERVLGFIQTDDRLKGL RQIESPVSPEQEAIHHGHSTSSPLAAGEDAPFRWDHVRVKLKKEIVTLGMPEVSPIEK VGKYVSPKDWNALISDPDTVVIDVRNNYETRIGMFKGAVDPCTTAFREFPPWVEDQFR LDGSELEHANMEKKGLDESINKDAEIPKQKMPKRVAMYCTGGIRCEKASSFLLNKGFE EVYHLKGGILKYLEEVPKTESLWEGECFVFDKRVSVEHGLVQGNFKLCYGCKQPVSDA DMEAPEWEYGVSCPHCFLSKSEEEKERARARQRQFETWGIIGGLDKGRRPASKPDSIK RNQTKLSSSV" CDS join(25167047..25167406,25167879..25168130, 25168238..25168336,25169200..25169264,25169708..25170086) /locus_tag="TCM_045558" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 3" /protein_id="EOY20181.1" /db_xref="Phytozome:POPTR_0019s08750.1" /db_xref="TAIR:AT2G40760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8R7P5" /translation="MLRCRPPLSLALRMLSSSSHTSNPNPIFHLPCTSRPTSGLPLKA RLSNSCSSDRRMTLSKCFTGAAADPIPVSSSGKPHCCQNPEEPDSDSLVVVSFYRFAD FPDHADLRKPLKKLCEDLRVSGGIILAPEGINGSICGTRESVERVLGFIQTDDRLKGL RQIESPVSPEQEAIHHGHSTSSPLAAGEDAPFRWDHVRVKLKKEIVTLGMPEVSPIEK VGKYVSPKDWNALISDPDTVVIDVRNNYETRIGMFKGAVDPVYHLKGGILKYLEEVPK TESLWEGECFVFDKRVSVEHGLVQGNFKLCYGCKQPVSDADMEAPEWEYGVSCPHCFL SKSEEEKERARARQRQFETWGIIGGLDKGRRPASKPDSIKRNQTKLSSSV" mRNA join(25167129..25167406,25167879..25168130, 25168238..25168336,25169200..25169482,25169709..25170500) /locus_tag="TCM_045558" /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08750.1" /inference="similar to AA sequence:frave:gene21366" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9242t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc116t11; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc20607t1" CDS join(25167212..25167406,25167879..25168130, 25168238..25168336,25169200..25169482,25169709..25169797) /locus_tag="TCM_045558" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene21366" /codon_start=1 /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 2" /protein_id="EOY20180.1" /db_xref="TAIR:AT2G40760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1JPN0" /translation="MTLSKCFTGAAADPIPVSSSGKPHCCQNPEEPDSDSLVVVSFYR FADFPDHADLRKPLKKLCEDLRVSGGIILAPEGINGSICGTRESVERVLGFIQTDDRL KGLRQIESPVSPEQEAIHHGHSTSSPLAAGEDAPFRWDHVRVKLKKEIVTLGMPEVSP IEKVGKYVSPKDWNALISDPDTVVIDVRNNYETRIGMFKGAVDPCTTAFREFPPWVED QFRLDGSELEHANMEKKGLDESINKDAEIPKQKMPKRVAMYCTGGIRCEKASSFLLNK GLSFERWDFKIPGGSSQNRESVGGGVLCV" mRNA join(<25167381..25167406,25167889..25168130, 25168238..25168336,25169200..25169493,25169709..25170500) /locus_tag="TCM_045558" /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08750.1" /inference="similar to AA sequence:ricco:29729.m002390" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9242t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc116t11" CDS join(<25167382..25167406,25167889..25168130, 25168238..25168336,25169200..25169493,25169709..25170086) /locus_tag="TCM_045558" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29729.m002390" /codon_start=1 /product="Rhodanese/Cell cycle control phosphatase superfamily protein isoform 4" /protein_id="EOY20182.1" /db_xref="TAIR:AT2G40760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1JPN0" /translation="LEETLRGPGGIILAPEGINGSICGTRESVERVLGFIQTDDRLKG LRQIESPVSPEQEAIHHGHSTSSPLAAGEDAPFRWDHVRVKLKKEIVTLGMPEVSPIE KVGKYVSPKDWNALISDPDTVVIDVRNNYETRIGMFKGAVDPCTTAFREFPPWVEDQF RLDGSELEHANMEKKGLDESINKDAEIPKQKMPKRVAMYCTGGIRCEKASSFLLNKGF EEVYHLKGGILKYLEEVPKTESLWEGECFVFDKRVSVEHGLVQGNFKLCYGCKQPVSD ADMEAPEWEYGVSCPHCFLSKSEEEKERARARQRQFETWGIIGGLDKGRRPASKPDSI KRNQTKLSSSV" mobile_element 25168969..25169006 /note="source:INTACT19_F111_scaffold_6-int 12679 12717" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25170670..25172902 /locus_tag="TCM_045559" /note="dbxref CacaoGD:Thecc1EG045559" mRNA join(25170670..25170968,25172298..25172902) /locus_tag="TCM_045559" /product="Ubiquinol-cytochrome c reductase complex 6.7 kDa protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08760.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc11103t1" CDS join(25170846..25170968,25172298..25172348) /locus_tag="TCM_045559" /codon_start=1 /product="Ubiquinol-cytochrome c reductase complex 6.7 kDa protein" /protein_id="EOY20183.1" /translation="MAGEGAMFKFLRPRLRPQPGDIQAAALWGVAATTTGLWLIQPFD WLKRTFLEKPESK" gene 25170943..25172292 /locus_tag="TCM_045560" /note="dbxref CacaoGD:Thecc1EG045560" mRNA join(25170943..25170968,25171983..25172292) /locus_tag="TCM_045560" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10254t4" CDS 25172089..25172265 /locus_tag="TCM_045560" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20184.1" /translation="MDAYCYAYFVDEILNFCLSMFDFSYFELPLYFHLNFAKCACIVN LSLEVTVVYEFLND" gene 25173114..25174868 /locus_tag="TCM_045561" /note="dbxref CacaoGD:Thecc1EG045561" mRNA join(25173114..25173520,25173801..25174868) /locus_tag="TCM_045561" /product="Transcript elongation factor IIS, putative" /inference="alignment:exonerate- protein:2:ricco:30005.m001266" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019685t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s10980.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10161t00001" CDS join(25173344..25173520,25173801..25174667) /locus_tag="TCM_045561" /note="paralog of Thecc1EG019685t1" /codon_start=1 /product="Transcript elongation factor IIS, putative" /protein_id="EOY20185.1" /db_xref="Phytozome:POPTR_0006s10980.1" /db_xref="TAIR:AT2G38560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGU7" /translation="MEKVKVKEKEVVELFEAAKKAADRAAALDGGASEESRCIDALSQ LKDFPITYQLLVSTQVGKQLRCLTKHPRKKIQAFACDLLQIWKNLVIEKKNSDNNNGK LGSKSSVRAEPATAKLAYAKKVQKTQTNGTANPERVAEETNSVENKVENIIKEERQAS SDAKAPPELSSMVKCNDELRDKVREQIYESLCKVVSEAGDDFLDEVNACDPIRVAVSV ESAMFESWGKSNSAKKIRYRSTLFNMKDQNNPDFRRKILLGQVKPEKIVTMTTEEMAS DRRKLENQQLKDKAIFNCQRMDALTATTDQFKCGRCGSRKTTYCQMQTRSADEPMTTY VTCTNCNNRWKFC" gene complement(25174909..25175905) /locus_tag="TCM_045562" /note="dbxref CacaoGD:Thecc1EG045562" mRNA complement(25174909..25175905) /locus_tag="TCM_045562" /product="Voltage-dependent T-type calcium channel subunit alpha-1I, putative" /inference="alignment:exonerate- protein:2:ricco:29729.m002387" /inference="similar to AA sequence:ricco:29729.m002387" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16737t00001" CDS complement(25175322..25175804) /locus_tag="TCM_045562" /note="dbxref ricco:29729.m002387" /codon_start=1 /product="Voltage-dependent T-type calcium channel subunit alpha-1I, putative" /protein_id="EOY20186.1" /translation="METTALCQTSTLGTGSSPPINKTIKQFPKSFEGRSSRLRMPSRG LGSHGLRLKQRFGRGLGLGCVASDSGLLAEFERELEAEMKPEEEEWMRVGKLGERCKE RKGVVELLECLETEAIMGEDQGKEPTDYNRRAQIFDKSSRVFQALKARSKPSESLQQP " gene complement(25175940..25190054) /locus_tag="TCM_045563" /note="dbxref CacaoGD:Thecc1EG045563" mRNA complement(join(25175940..25176330,25176486..25176785, 25177660..25177924,25178195..25178346,25178497..25178714, 25179354..25179558,25179859..25180101,25180373..25180489, 25181136..25181333,25181426..25181642,25182021..25182187, 25183028..25183609,25183691..25183860,25183971..25184211, 25185224..25185479,25185997..25186197,25187097..25187577, 25188166..25188227,25188401..25188607,25188729..25189557, 25189845..25190054)) /locus_tag="TCM_045563" /product="Zinc ion binding,DNA binding,helicases,ATP binding,nucleic acid binding isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08910.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s08910.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8138t9" mRNA complement(join(25176304..25176330,25176486..25176785, 25177660..25177924,25178195..25178346,25178497..25178714, 25179354..25179558,25179859..25180101,25180373..25180489, 25181136..25181333,25181426..25181642,25182021..25182187, 25183028..25183609,25183691..25183812,25183971..25184211, 25185224..25185479,25185997..25186197,25187097..25187577, 25188166..25188227,25188401..25188607,25188729..25189557, 25189845..25190036)) /locus_tag="TCM_045563" /product="Zinc ion binding,DNA binding,helicases,ATP binding,nucleic acid binding isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08910.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s08910.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc508t1; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8138t9; inference alignment:Newbler:10:TSA:cgbaB_g09285t00001" CDS complement(join(25176540..25176785,25177660..25177924, 25178195..25178346,25178497..25178714,25179354..25179558, 25179859..25180101,25180373..25180489,25181136..25181333, 25181426..25181642,25182021..25182187,25183028..25183609, 25183691..25183812,25183971..25184211,25185224..25185479, 25185997..25186197,25187097..25187577,25188166..25188227, 25188401..25188607,25188729..25189549)) /locus_tag="TCM_045563" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zinc ion binding,DNA binding,helicases,ATP binding,nucleic acid binding isoform 2" /protein_id="EOY20188.1" /db_xref="Phytozome:POPTR_0019s08910.1" /db_xref="TAIR:AT2G40770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T4A9" /translation="MGRKKQSNPRRSGALVIETNGNAEPDLYKQEANQNGQKGKEELV DTEKPFFVEIDKTSWHSDEHLDISEVVLIDLNLREGFAGYRISEDFYGDSKYSLRFRV CNVCEFISRIKLGHWPVLSSSDVSLEFVEKNMNDGVEMESVMLSGSFDGLDEGISSLV HLASLKFVTLRPVMGVMLSESLSSLRVRVEILKRVFENCESLMENTRQLWKKSMMNVM AWLRPEVMTSEAKYGISESMNMEVDVYPVKEEETSRPGKRARFDVSGFYEAIKPSKEN SMLEDEIPDLVPVLRPYQRRAAYWMVQREKGDSRSLDEWERSMLSSPLCIPVDFLDDY SKMYFNPFGGNVSRHLESTSPYVYGGILADEMGLGKTVELLACIFAHQKPSSEGGVCK DTEAEVTMDEKISLRRLKRERVECICGAVSENRKYKGLWVQCDICDAWQHSECVGYSP RGKARKASASADEQGLQKPKRRKEITNIVVREGEHICQPCSELLQATDSPIASGATLI VCPAPILSQWHDEIIRHTRPGSLKTCVYEGVRNPSLSNASRVDINELVSADIVLTTYD VLKEDLSHDSDRHEGDRRFLRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNTAAATE MAMRLYAKHHWCITGTPIQRKLDDLYGLLRFLKLSPFNVSRWWVEVIRDPYERREGGA MEFTHKLFKRIMWRSSKVHVADELQLPPQEECVSWLTFSPIEEHFYQRQHETCVSYAS EVLESLKEDFLKREVPEAAKLLNSLLKLRQACCHPQVGSFGLRSLQQAPMTMEEILNV LISKTKTEGEEALRMLVSALNGLAGIAIIEEKLSQAVSLYKEALDITKEHSEDFRLDP LLNIHIHHNLAEILQMVTSLEKLPVEMQQFSGSSEKASKAHGNELCDQSSVKSQKLYD QENSEINAGNLPDIASDLSENGINNDQDSNGQCHVSSGTLNKQSLRIDCENLKQRYLS AFTTKLSAAQQEFRKSYMQVCNAFSDIKNEDTVWWLEALHHAEQNKDFSNELIRKIEE AIAGSLKNRRSLRMSSWFQSITALKYHIQTGLDLLESVRAKLLDRLLEIDKTMERPKE EDIDRVRYCRNCQVLGDGPICVHCELEDLFQDYEARLFRVNKKDGDIIISAEEAVDLQ KKKSALNRFYWNLSQPNKNSTLSDVDNKELKRDVQETIVVSKSPSQLEVALGVIKSCC KGQLGKEGMLAATKQLHILEGMRKEYRHARLLAIAQAQVLNAHDEIKMATTRLHIREA ENDKSIDALSPNELASASVQNTSDKFMSLTLLSNIKGKLRYLKGLVLSKNKLPMESSD NSALTQDMTTMSTSIEQKSTCLPKADGEACPVCQERLSNQKMVFQCGHITCCKCLFVM TEQRSRYWNKSQNKWVMCPICRQHTDVGNIALADDRQIKSPNSAILHTIQGGNNGEES LTVQGSYGTKIEAVTRRILWIKSADPKAKVLVFSSWNDVLDVLEHAFTANDITYIRTK GGRKSHVAISEFRGQTIGEKGIQKIHKKKPEPKFVQVLLILIQHGANGLNLLEAQHVI LVEPLLNPAVEAQAISRVHRIGQENRTLVHRFIVKNTVEESIYKLNRSRNSSGFVGNT RNQDQPVLTLKDVESLFAAAPKTDEKPTESESLRNLPPSVAAAIAAERRLRGNPTA" CDS complement(join(25176540..25176785,25177660..25177924, 25178195..25178346,25178497..25178714,25179354..25179558, 25179859..25180101,25180373..25180489,25181136..25181333, 25181426..25181642,25182021..25182187,25183028..25183609, 25183691..25183860,25183971..25184211,25185224..25185479, 25185997..25186197,25187097..25187577,25188166..25188227, 25188401..25188607,25188729..25189549)) /locus_tag="TCM_045563" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zinc ion binding,DNA binding,helicases,ATP binding,nucleic acid binding isoform 1" /protein_id="EOY20187.1" /db_xref="Phytozome:POPTR_0019s08910.1" /db_xref="TAIR:AT2G40770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T4A9" /translation="MGRKKQSNPRRSGALVIETNGNAEPDLYKQEANQNGQKGKEELV DTEKPFFVEIDKTSWHSDEHLDISEVVLIDLNLREGFAGYRISEDFYGDSKYSLRFRV CNVCEFISRIKLGHWPVLSSSDVSLEFVEKNMNDGVEMESVMLSGSFDGLDEGISSLV HLASLKFVTLRPVMGVMLSESLSSLRVRVEILKRVFENCESLMENTRQLWKKSMMNVM AWLRPEVMTSEAKYGISESMNMEVDVYPVKEEETSRPGKRARFDVSGFYEAIKPSKEN SMLEDEIPDLVPVLRPYQRRAAYWMVQREKGDSRSLDEWERSMLSSPLCIPVDFLDDY SKMYFNPFGGNVSRHLESTSPYVYGGILADEMGLGKTVELLACIFAHQKPSSEGGVCK DTEAEVTMDEKISLRRLKRERVECICGAVSENRKYKGLWVQCDICDAWQHSECVGYSP RGKARKASASADEQGLQKPKRRKEITNIVVREGEHICQPCSELLQATDSPIASGATLI VCPAPILSQWHDEIIRHTRPGSLKTCVYEGVRNPSLSNASRVDINELVSADIVLTTYD VLKEDLSHDSDRHEGDRRFLRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNTAAATE MAMRLYAKHHWCITGTPIQRKLDDLYGLLRFLKLSPFNVSRWWVEVIRDPYERREGGA MEFTHKLFKRIMWRSSKVHVADELQLPPQEECVSWLTFSPIEEHFYQRQHETCVSYAS EVLESLKEDFLKREVPGSICSGVTFDPLITHTEAAKLLNSLLKLRQACCHPQVGSFGL RSLQQAPMTMEEILNVLISKTKTEGEEALRMLVSALNGLAGIAIIEEKLSQAVSLYKE ALDITKEHSEDFRLDPLLNIHIHHNLAEILQMVTSLEKLPVEMQQFSGSSEKASKAHG NELCDQSSVKSQKLYDQENSEINAGNLPDIASDLSENGINNDQDSNGQCHVSSGTLNK QSLRIDCENLKQRYLSAFTTKLSAAQQEFRKSYMQVCNAFSDIKNEDTVWWLEALHHA EQNKDFSNELIRKIEEAIAGSLKNRRSLRMSSWFQSITALKYHIQTGLDLLESVRAKL LDRLLEIDKTMERPKEEDIDRVRYCRNCQVLGDGPICVHCELEDLFQDYEARLFRVNK KDGDIIISAEEAVDLQKKKSALNRFYWNLSQPNKNSTLSDVDNKELKRDVQETIVVSK SPSQLEVALGVIKSCCKGQLGKEGMLAATKQLHILEGMRKEYRHARLLAIAQAQVLNA HDEIKMATTRLHIREAENDKSIDALSPNELASASVQNTSDKFMSLTLLSNIKGKLRYL KGLVLSKNKLPMESSDNSALTQDMTTMSTSIEQKSTCLPKADGEACPVCQERLSNQKM VFQCGHITCCKCLFVMTEQRSRYWNKSQNKWVMCPICRQHTDVGNIALADDRQIKSPN SAILHTIQGGNNGEESLTVQGSYGTKIEAVTRRILWIKSADPKAKVLVFSSWNDVLDV LEHAFTANDITYIRTKGGRKSHVAISEFRGQTIGEKGIQKIHKKKPEPKFVQVLLILI QHGANGLNLLEAQHVILVEPLLNPAVEAQAISRVHRIGQENRTLVHRFIVKNTVEESI YKLNRSRNSSGFVGNTRNQDQPVLTLKDVESLFAAAPKTDEKPTESESLRNLPPSVAA AIAAERRLRGNPTA" gene 25190247..25192611 /locus_tag="TCM_045564" /note="dbxref CacaoGD:Thecc1EG045564" mRNA join(25190247..25190445,25190835..25190910, 25191367..25191493,25192229..25192611) /locus_tag="TCM_045564" /product="OB-fold nucleic acid binding domain-containing protein" /inference="alignment:exonerate-protein:2:frave:gene28278" /inference="similar to AA sequence:Phytozome:POPTR_0019s08940.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10525t00001" CDS join(25190332..25190445,25190835..25190910, 25191367..25191493,25192229..25192451) /locus_tag="TCM_045564" /codon_start=1 /product="OB-fold nucleic acid binding domain-containing protein" /protein_id="EOY20189.1" /db_xref="Phytozome:POPTR_0019s08940.1" /db_xref="TAIR:AT2G40780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4II37" /translation="MKGGRKNLKRAAKDQNLSLQHGQSIMQVLSLRGSNLIEVVDARG GKSLALFPAKFQKSLWIKRGSFVVVDESGKEKALESGSKVACIVSQVLFYEQLRALQK SPEWPENFKSSNLDDLVENDGGATSECLQRHPSQQEVEDELESSDDDGLPPLEANLNR IKPFELQSDRESDSGSDSD" gene 25192994..25197794 /locus_tag="TCM_045565" /note="dbxref CacaoGD:Thecc1EG045565" mRNA join(25192994..25193493,25193728..25193870, 25193999..25194112,25194399..25194587,25194715..25194870, 25195279..25195544,25195645..25195742,25195841..25196019, 25196557..25196673,25197088..25197794) /locus_tag="TCM_045565" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g36520.1" /inference="similar to AA sequence:Phytozome:GSVIVT01032656001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7113t3" CDS join(25193277..25193493,25193728..25193870, 25193999..25194112,25194399..25194587,25194715..25194870, 25195279..25195544,25195645..25195742,25195841..25196019, 25196557..25196673,25197088..25197267) /locus_tag="TCM_045565" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY20190.1" /db_xref="Phytozome:GSVIVT01032656001" /db_xref="TAIR:AT5G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASX5" /translation="MAVATFRSGRLPLFHHPQLPNKAAAAAGCSRRSGVGLKKLNGRS KSRALLLFAQNSQPSQTQEQDRFSSRFQSSIENLPQLVEDIVRTSISTGPRGALRLAQ GIQAFVGVGGEWLADVSRSTNTSTRIPSELQLGLLSPLYLRKLFERMGATYIKLGQFV ASAPTLFPPEYVEEFQKCFDRAPAVPYEDIQRILLQELGRPIDSIYEYIDPTPIASAS IAQVHGARLRGSQDDVVIKVLKPGIEDILVADLNFIYVVARILEFLNPELSRTSLVGI VKDIRESMLEEVDFNKEAANIESFRRYLEAMGLTRQATAPRVYNHCSTRRVLTMERLY GVPLTDLDTISSLVSSPENSLITALNVWFGSLLACESFHADVHAGNLWLLRDGRIGFL DFGIVGRISPKTWAAMEVFLASIATEEYESMAAALIEMGATNKDVDAKAFARDLEKIF SSIQELDTEIVVATARGTNTNATAVSANVIVDERQMNALFLDVVRVSESYGLRFPREF ALLMKQLLYFDRYTRLLAPNLNMLQDQRISIVSNRRSNYRDNFK" gene complement(25197588..25203612) /locus_tag="TCM_045567" /note="dbxref CacaoGD:Thecc1EG045567" mRNA complement(join(25197588..25201302,25201677..25201931, 25203172..25203612)) /locus_tag="TCM_045567" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7109t2" CDS complement(join(25198151..25201302,25201677..25201797)) /locus_tag="TCM_045567" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20191.1" /translation="MASGTTPKVRLVRCPKCRLVLPEVADVPVYKCGGCDAILVAKNQ KAIAKSMSVLQETEAAQGNKLVHVSEHGESSSSTLQEVPSSTPECHLSQESGGDQNIS RDSHSEKHGENLSIEGQHNDHYDKDQNTSSDSESGGNQNISRDSHSEKHGENLSIEGQ HNDHYDKDQNTSSDSESGGNQNISGDSHSEKHGENLSIEGQHNDHYDKDQNTSSDSES GGNQNISGDSHSEKHGENLSIEGQHNDHYDKDQNTSCDSESGGNQNISRDSLSEKHGE NLSIKGQHNCHYDKDQNTSSDSESGGNQNISRDSHSENHGENLSIEGQHNDHYDKDQN TSCDSESGGNQNISRDSHSEKHGENLSFEGQHNDHYDEDQNTSGDSDSDHDKLDVNRS NDGQQNGSEQLQLEHLEYCDVQQPGVSMESSFSTELHRENEELMLLAEANLEAETNDK TSQLEGVNSELETNDKSDSNIRGLSIDNPLATKEINLTVTACAAAGAVISSDNLEQPQ KSEDHGFNRIRSSDTFESGDFFSPSSELSGHLEYLSKSTTTRSSHAYDGSISSYDGMD DHFTDQQINSFKNNYKAANYLVPEDSRRRDKLPAKGMMNGNYGMQDHARNFSSDLSNK RHYATEKYRKWRRDELLEPEMHHHPPRNWQRLERDESPSQIPFSQRASLRGYESAGPS RQLHDESPFDSAFYPLEKAEYTEQENMKLLRMVYELQDQISKTCHLNGKPNGRTSTNV PWRQKHIPTYYYQEPPEEENFYSRYHGRHGPRSSWSQQSRFSPIPFSGGEINTRHHID NSCLCCHPQDWHCSEQLPPPIFQHNQGFWRAHPGQSCYNSYSSCPSSPQRYLESDFSI WSHETKSDNQRYKDHELKRYLREKHHSARRHLRPMAGGAPFVTCYHCFRPLQLPADFL LFKSRFHQLRCGACSKVLKFSLQKGMHIVPYDLVAAEPPPSETEDCGDVIDVRISTSA SCSCSPDGGPVSHAQFHDLQGDPHVRNMSFSSSKPLEQKKDFALEQSQNKHKNSVENF DSAMSSSNMSRSEKVSSGIEELPPRTGGSPLHQLMGYASPSLIINGFGPSISGKSSGL NS" mobile_element complement(25200529..25200573) /note="source:CACAO_M_E14276_F15_scaffold_3 363 409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25200775..25200819 /note="source:CACAO_M_E14227_F12_scaffold_3 6735 6781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25200898..25200942 /note="source:CACAO_M_E14227_F12_scaffold_3 6735 6781" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25204962..25209688) /locus_tag="TCM_045568" /note="dbxref CacaoGD:Thecc1EG045568" mRNA complement(join(25204962..25205260,25205979..25207693, 25207916..25208021,25209329..25209688)) /locus_tag="TCM_045568" /product="Kinase interacting family protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21378" /inference="similar to AA sequence:Phytozome:POPTR_0019s08970.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04482t00001" mRNA complement(join(25205001..25205260,25205979..25207693, 25207916..25208021,25208347..25208520)) /locus_tag="TCM_045568" /product="Kinase interacting family protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21378" /inference="similar to AA sequence:Phytozome:POPTR_0019s08970.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc293t3; alternateUTRof:Thecc1EG045568t1; inference alignment:Newbler:10:TSA:cgbaP2_g04482t00001" CDS complement(join(25206000..25207693,25207916..25208021)) /locus_tag="TCM_045568" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Kinase interacting family protein, putative isoform 1" /protein_id="EOY20192.1" /db_xref="Phytozome:POPTR_0019s08970.1" /db_xref="TAIR:AT5G05180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1T9" /translation="MEVNVKKAESKNTKSCWWDTHLNPENSEWLVENSKEMEQSVRQI LKLVEDNIEDLAKNDEMHYQNKSEVIVHVQELYRIYQLLAERHDHLTRELRKSLPSDC QIQGPGSGFDQNSPLITPDKKLGLHKSIQQAASFSSGGGSSDLSLKEGTESSSLSSDS DSESFSSSVNIYMGSPVNTDNGVVHDKVIELGSELPTMKEKVQVADKEISDGKLKMRE NRNYEELTLTERLAKFEEELRDSNLKLQLAEEEIVRLKAELKKSESVPVLAEHVLVQL ESLQRDAELREADLVLQKDKVLELQKQIVDLETHVSDSNSEVVRLMEELAVSKEKIKA SEEEIAMFKHELDMERRQVANLQEQIVRYSNDLSHRGHEVEELKVALCDAQDNFSLQK ASFQSEIFGLLEKETLLEARLKEWELHARLLEETLRQCEAEKMEIKGLHDVQEIGLQG QISQLKAEVTEKGVHVEALNKNLDRLKLKYDMLMAEKDGVIAKVNSLVAELSSRDLQI GQMEEHLQQLRRDHLQLISGSKNAKNLEDELKLRIKDLEKEVDRQRIVILDVAEEKRE VIRQLSFTLEHYRSGYKEFQAFFKHKRHAVMAS" CDS complement(join(25206000..25207693,25207916..25208021)) /locus_tag="TCM_045568" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kinase interacting family protein, putative isoform 1" /protein_id="EOY20193.1" /db_xref="Phytozome:POPTR_0019s08970.1" /db_xref="TAIR:AT5G05180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1T9" /translation="MEVNVKKAESKNTKSCWWDTHLNPENSEWLVENSKEMEQSVRQI LKLVEDNIEDLAKNDEMHYQNKSEVIVHVQELYRIYQLLAERHDHLTRELRKSLPSDC QIQGPGSGFDQNSPLITPDKKLGLHKSIQQAASFSSGGGSSDLSLKEGTESSSLSSDS DSESFSSSVNIYMGSPVNTDNGVVHDKVIELGSELPTMKEKVQVADKEISDGKLKMRE NRNYEELTLTERLAKFEEELRDSNLKLQLAEEEIVRLKAELKKSESVPVLAEHVLVQL ESLQRDAELREADLVLQKDKVLELQKQIVDLETHVSDSNSEVVRLMEELAVSKEKIKA SEEEIAMFKHELDMERRQVANLQEQIVRYSNDLSHRGHEVEELKVALCDAQDNFSLQK ASFQSEIFGLLEKETLLEARLKEWELHARLLEETLRQCEAEKMEIKGLHDVQEIGLQG QISQLKAEVTEKGVHVEALNKNLDRLKLKYDMLMAEKDGVIAKVNSLVAELSSRDLQI GQMEEHLQQLRRDHLQLISGSKNAKNLEDELKLRIKDLEKEVDRQRIVILDVAEEKRE VIRQLSFTLEHYRSGYKEFQAFFKHKRHAVMAS" mobile_element 25210850..25211050 /note="source:scaffold_5_CACTA_0615 2045 2252" /mobile_element_type="transposon:TIR/CACTA" gene 25214894..25217657 /locus_tag="TCM_045570" /note="dbxref CacaoGD:Thecc1EG045570" mRNA join(25214894..25215215,25215302..25215442, 25216640..25216774,25216998..25217657) /locus_tag="TCM_045570" /product="Methyl esterase 17" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08980.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s08980.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07144t00001" CDS join(25214958..25215215,25215302..25215442, 25216640..25216774,25216998..25217279) /locus_tag="TCM_045570" /codon_start=1 /product="Methyl esterase 17" /protein_id="EOY20194.1" /db_xref="Phytozome:POPTR_0019s08980.1" /db_xref="TAIR:AT3G10870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SG92" /translation="MGEEVSMTETEIAMSIPHFVLVHGISGGAWCWYKIRCLMENSGY KVSCIDLKGAGIDQSDANSILSFDDYNKPLLDFMSALPDTEQVILVGHSAGGLSVTQA THKFSKKIRLAVYVAATMLKLGYLTDQDIKDGVPDLSGFGDVYELGFGLGPEQPPTSA IVKKEFQRKIIYQMSPQEDSTLATMLLRPGPILALQGAQFTEETENVYNVPRIYIKTM HDNVVKPHQQVAMIKRWPPSEVHVLDSDHSPFFSAPFLLFGLLVKLAASAGYN" mobile_element 25220198..25220249 /note="source:scaffold_1_CACTA_0001 14518 14572" /mobile_element_type="transposon:TIR/CACTA" gene 25220807..25225629 /locus_tag="TCM_045572" /note="dbxref CacaoGD:Thecc1EG045572" mRNA join(25220807..25220906,25221808..25222756, 25222954..25223036,25223132..25223252,25223550..25223723, 25224265..25224372,25224672..25225458) /locus_tag="TCM_045572" /product="Serine/threonine protein kinase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g41010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019682t1" /inference="similar to AA sequence:ricco:29915.m000484" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7163t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7163t3" CDS join(25222079..25222756,25222954..25223036, 25223132..25223252,25223550..25223723,25224265..25224372, 25224672..25224965) /locus_tag="TCM_045572" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29915.m000484; paralog of Thecc1EG019682t1" /codon_start=1 /product="Serine/threonine protein kinase 2 isoform 1" /protein_id="EOY20195.1" /db_xref="TAIR:AT3G08720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39030" /translation="MVSSHLSSLNGSRMQKPFQNNFLFPNGQPDTLASDHVEFDFSDV FGPAPVQASTEISTENNKTLIVATESNELLYDEPAVICSRSHSLVGPSSYVSHSLKLS KLTLRETGDSLELVGVREEAQKELRKPSIDDVILENPDGHVESHSLEHQSVGLEDFEV LKVVGQGAFGKVYQVRRSDTSDIYAMKVMRKDKVMEKNHAEYMKSERDILTKVDHPFI VQLRYSFQTKYRLYLVLDFVNGGHLFFQLYRQGLFREDLARIYTAEIVSAVSHLHANG IMHRDLKPENILLDADGHVMLTDFGLAKEFDENTRSNSMCGTLEYMSPEIVLGKGHDK AADWWSVGILLYEMLTGKPPFIGGNRQKIQEKIIKDKIKLPAFLSSEAHSILKGLLQK EASKRLGSGQGGSEEIKRHKWFNSINWKKLEAREIRPSFLPEVAGNHCVANFEECWTN MPLLDSPVASPTFGENPFKGFTYVRPAASFLQRNA" mRNA join(<25222122..25222756,25224295..25224372, 25224672..25225629) /locus_tag="TCM_045572" /product="Serine/threonine protein kinase 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g41010.1" /inference="similar to AA sequence:frave:gene13564" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9368t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7163t3" CDS join(<25222124..25222756,25224295..25224372, 25224672..25224965) /locus_tag="TCM_045572" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene13564" /codon_start=1 /product="Serine/threonine protein kinase 2 isoform 2" /protein_id="EOY20196.1" /db_xref="TAIR:AT3G08720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39030" /translation="KPFQNNFLFPNGQPDTLASDHVEFDFSDVFGPAPVQASTEISTE NNKTLIVATESNELLYDEPAVICSRSHSLVGPSSYVSHSLKLSKLTLRETGDSLELVG VREEAQKELRKPSIDDVILENPDGHVESHSLEHQSVGLEDFEVLKVVGQGAFGKVYQV RRSDTSDIYAMKVMRKDKVMEKNHAEYMKSERDILTKVDHPFIVQLRYSFQIQEKIIK DKIKLPAFLSSEAHSILKGLLQKEASKRLGSGQGGSEEIKRHKWFNSINWKKLEAREI RPSFLPEVAGNHCVANFEECWTNMPLLDSPVASPTFGENPFKGFTYVRPAASFLQRNA " gene complement(25225654..25227858) /locus_tag="TCM_045573" /note="dbxref CacaoGD:Thecc1EG045573" mRNA complement(25225654..25227858) /locus_tag="TCM_045573" /product="High affinity inorganic phosphate transporter" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015338t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s08990.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc11944t1; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1227t1_C2" CDS complement(25225831..25227420) /locus_tag="TCM_045573" /note="paralog of Thecc1EG015338t1" /codon_start=1 /product="High affinity inorganic phosphate transporter" /protein_id="EOY20197.1" /db_xref="Phytozome:POPTR_0019s08990.1" /db_xref="TAIR:AT5G43350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N991" /translation="MGEGSQAILSALDNARTQRYHFKAIVIAGMGFFTDAYDIFCITA VSKLIGRLYYYDPVTDKPGTFPKDIKSAVTGVALFGTLAGQLFFGWLGDKLGRKKVYG ITLVTMVGCAIASGISFGSTANSVIGTLCFFRFWLGFGIGGDYPLSAVIMSEYANQKT RGAFIAAVFAMQGTGILVAGIVAMIVSKAFLLAYPAKPFSANHVLSTQPEGDFVWRIV LMFGAVPAALTYYWRLKMPETARFTALVQGDQKKAAADMAKVLETDLTVAESSAKVDP NSSYGLFTSEFMKRHGTHLLGTCTTWFLLDIAFYSLQLTQTDVYPASGLLDKAPSMNA IEETFQLSKAMFLIALAATVPGYWFTVFLIDKIGRFIIQLGGFLMMSVCMAILGFRYH YLRGEKCTESATKDFCHGHTTLFTILYGLTFFFANFGPNSTTFIVPAEIFPARLRSTC HGISAAAGKAGAIIAAFVFQKYTQEDKKIKDVIIALSVVNMVGFLFTFLVPETKGRSL EELSGEDNDLGGINVPETEMV" gene 25227879..25229577 /locus_tag="TCM_045574" /note="dbxref CacaoGD:Thecc1EG045574" mRNA join(25227879..25228177,25228824..25228915, 25229022..25229238,25229326..25229577) /locus_tag="TCM_045574" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29976.m000512" /inference="similar to AA sequence:Phytozome:POPTR_0013s15420.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7125t1" CDS join(25228090..25228177,25228824..25228915, 25229022..25229238,25229326..25229438) /locus_tag="TCM_045574" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20198.1" /db_xref="Phytozome:POPTR_0013s15420.1" /translation="MEISASNATRLLCLYGFLVTSLLFSQINADGKIKQVTDPTGNVN LSPFQQWKSAYECLQNKSTSCSDKYILTEAGWMNITTADTDEFCKPGGCGEHTMAVLT CIHLVKRDYKFANKATVQDLIVTITQGCDYGFNGTTIISDARRSSKSGIEFIISILVA LFLSMHFHD" gene complement(25230037..25231911) /locus_tag="TCM_045575" /note="dbxref CacaoGD:Thecc1EG045575" mRNA complement(join(25230037..25230167,25231552..25231911)) /locus_tag="TCM_045575" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc216t10" CDS complement(25231602..25231898) /locus_tag="TCM_045575" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20199.1" /translation="MDPAAPVSDTNDVPTVERLEIHRAERHITKLARLLALHDNCRDV VFQGANMALQAVLPNSNSDVPIDINSQVLIHSRNTTISIIWNSNSISDVYWYWS" gene complement(25232820..25233556) /locus_tag="TCM_045577" /note="dbxref CacaoGD:Thecc1EG045577" mRNA complement(join(25232820..25233215,25233303..25233556)) /locus_tag="TCM_045577" /product="Leucine-rich repeat protein kinase family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045579t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s09010.2" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage" CDS complement(join(25232997..25233215,25233303..25233401)) /locus_tag="TCM_045577" /note="paralog of Thecc1EG045579t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY20200.1" /db_xref="Phytozome:POPTR_0019s09010.2" /db_xref="TAIR:AT5G05160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1T5" /translation="MARIIGYRAPDVIETRKGTQKSDVYSFGVLLLEEWTAEVVDEEL LRFQHFQEEMVQMLQIAAACVAKTPEMRPKMDEIVRMIEDIRQPESKNRTSSEAESNI QMP" gene complement(25233755..25237492) /locus_tag="TCM_045578" /note="dbxref CacaoGD:Thecc1EG045578" mRNA complement(join(25233755..25234111,25234715..25234874, 25235175..25235297,25235959..25236105,25236743..25236855, 25237352..25237492)) /locus_tag="TCM_045578" /product="Thioredoxin H-type, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s09000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019676t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025873001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc10063t2_C1" CDS complement(join(25234728..25234874,25235175..25235297, 25235959..25236105,25236743..25236814)) /locus_tag="TCM_045578" /note="paralog of Thecc1EG019676t1" /codon_start=1 /product="Thioredoxin H-type, putative" /protein_id="EOY20201.1" /db_xref="Phytozome:GSVIVT01025873001" /db_xref="TAIR:AT3G08710.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGZ1" /translation="MGHRWTKVTRSKQAVYKAKKNAFDFLQFFKCHNKDCKDHQARCV GLACRNVHHITTIQSWEAKLTEATRDGKILVANFSTLWSGPCRSIAPTYCELADKYSS LMFLTVDVDELAELSTSWDINATPTFFFLKDGRQVDKFVGDDKVELPKKIAAIANVAS RC" gene complement(25237300..25241412) /locus_tag="TCM_045579" /note="dbxref CacaoGD:Thecc1EG045579" mRNA complement(join(25237300..25238556,25239029..25240401, 25241247..25241412)) /locus_tag="TCM_045579" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s09010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042303t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s09010.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7149t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7149t1" mRNA complement(join(25237300..25238541,25239029..25240905)) /locus_tag="TCM_045579" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s09010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042303t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s09010.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc177t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7149t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc99t19" CDS complement(join(25237940..25238541,25239029..25240331)) /locus_tag="TCM_045579" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042303t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY20203.1" /db_xref="Phytozome:POPTR_0019s09010.1" /db_xref="TAIR:AT5G58300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1T5" /translation="MSMKFQPFIALLTFLFLQLPLHKFPQVLADLNSDRQALLDFAAA VPHARKLNWNATAPVCTSWVGVTCDLNRTRVIAIRLPGIGLSGPIPVNTIGKLDALGV LSLRSNNLSGNLPSDIPSIPSLRRLFLQYNNFSSVFPASLSPRLNALDFSYNSFTGII PTTLQNLTRLAILNLQNNSISGVIPYLNLPSLKVLNFSYNNLTGSIPNSLKRFPSSSF IGNPFLCGSPLKLCSAVSSSPSPSPSSFPNPPTVSQSRHASSKNKLGAGSIIAIVIGG LAFLFLLLVVVVIHCLKRKDSGGSGMLKKKISGGGKSEKPNDFGSGVQEAEKNKLFFF EGCSYNFDLEDLLKASAEVLGKGSYGTTYKAALEEGTQVVVKRLKEVAVGKREFEQQM EVLDRVGRHPNVMPLRAYYYSKDEKLLVYSYMPAGSLFSLLHGRTPLDWDSRMKIALG TARGIAHIHTEGGGKCTHGNIKSSNILLSDELEGCVSDVGLAPLMNAPVTMSRIMGYR APEVIQTRKVTQKSDVYSFGVLLLEMLTAKAPLQPSGHDEVVDLPRWVRSVVREEWTA EVFDVELLRFQHFQEEMVQMLQIALACVAKTTETRPKMDEIVRMIEDIRQPESKNRTS SEAESNIQTP" CDS complement(join(25237940..25238556,25239029..25240331)) /locus_tag="TCM_045579" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042303t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY20202.1" /db_xref="Phytozome:POPTR_0019s09010.1" /db_xref="TAIR:AT5G58300.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1T5" /translation="MSMKFQPFIALLTFLFLQLPLHKFPQVLADLNSDRQALLDFAAA VPHARKLNWNATAPVCTSWVGVTCDLNRTRVIAIRLPGIGLSGPIPVNTIGKLDALGV LSLRSNNLSGNLPSDIPSIPSLRRLFLQYNNFSSVFPASLSPRLNALDFSYNSFTGII PTTLQNLTRLAILNLQNNSISGVIPYLNLPSLKVLNFSYNNLTGSIPNSLKRFPSSSF IGNPFLCGSPLKLCSAVSSSPSPSPSSFPNPPTVSQSRHASSKNKLGAGSIIAIVIGG LAFLFLLLVVVVIHCLKRKDSGGSGMLKKKISGGGKSEKPNDFGSGVQEAEKNKLFFF EGCSYNFDLEDLLKASAEVLGKGSYGTTYKAALEEGTQVVVKRLKEVAVGKREFEQQM EVLDRVGRHPNVMPLRAYYYSKDEKLLVYSYMPAGSLFSLLHGNRSAGRTPLDWDSRM KIALGTARGIAHIHTEGGGKCTHGNIKSSNILLSDELEGCVSDVGLAPLMNAPVTMSR IMGYRAPEVIQTRKVTQKSDVYSFGVLLLEMLTAKAPLQPSGHDEVVDLPRWVRSVVR EEWTAEVFDVELLRFQHFQEEMVQMLQIALACVAKTTETRPKMDEIVRMIEDIRQPES KNRTSSEAESNIQTP" gene complement(25242609..25246700) /locus_tag="TCM_045580" /note="dbxref CacaoGD:Thecc1EG045580" mRNA complement(join(25242609..25243255,25243678..25243933, 25245038..25245310,25245955..25246700)) /locus_tag="TCM_045580" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032862001" /inference="similar to AA sequence:Phytozome:POPTR_0019s09020.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc101t3_C1" CDS complement(join(25243011..25243255,25243678..25243933, 25245038..25245310,25245955..25246527)) /locus_tag="TCM_045580" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20204.1" /db_xref="Phytozome:POPTR_0019s09020.1" /db_xref="TAIR:AT2G40800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXZ7" /translation="MWKPSSSSSSSSSRLIYAFLKLHSNRHRVNPFAIPSSSSSCSNG FHQLSSNPTSSNAGLSQFLFRSAHQSTPLRNRYIARPNPFSPSGLRFFSFKPSNFGQK FGGSFTKNAFQNPANAFRSTLSRYREAIGLHLEAFFKKNYLILFGAGGVLLCVLLWRI MFGIANSFIGLSEGMAKYGFLALSTAIVSFAGLYFRSRFTINPDKVYRMAMRRLNTAA GILEVMGAPLTGTELRAYVMSGGGLTVKNFKLKLRSKRCFLIFPIRGSERKGLVSVEV KKNKGQYVMKLLAVDIPMASGPDQRLFLIGDEEEYKVGGGLISELRDPVVKAMAATKE FDDLDQIEEEEDAERELQEAERKHREEIEKLEKGLPCFLRFLSLQASFSTKAAKLMPL SYCWPNGIQSPSLQLISELVIYAHYYSNLRKRASTRDVISDFIIIATKKTGYFWQR" gene complement(25247027..25249896) /locus_tag="TCM_045581" /note="dbxref CacaoGD:Thecc1EG045581" mRNA complement(join(25247027..25247615,25247843..25247906, 25248340..25248841,25249780..25249896)) /locus_tag="TCM_045581" /product="Ribosomal protein L16p/L10e family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29863.m001113.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042310t1" /inference="similar to AA sequence:Phytozome:Glyma18g05700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b043958t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g07055t00001" mRNA complement(join(25247027..25247615,25247843..25247924, 25248340..25248841,25249780..25249896)) /locus_tag="TCM_045581" /product="Ribosomal protein L16p/L10e family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29863.m001113.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042310t1" /inference="similar to AA sequence:Phytozome:Glyma18g05700.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07055t00001" CDS complement(join(25247547..25247615,25247843..25247906, 25248340..25248841,25249780..25249789)) /locus_tag="TCM_045581" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042310t1" /codon_start=1 /product="Ribosomal protein L16p/L10e family protein isoform 2" /protein_id="EOY20206.1" /db_xref="Phytozome:Glyma18g05700.1" /db_xref="TAIR:AT1G26910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P41805" /translation="MGRRPARCYRQIKNKPYPKSRYCRGVPDSKIRIYDVGMKKKGVD EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKM LSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCKDSNSHHAQEALRRAKFKFP GRQKIIVSRKCRADYLRWKSENRIVPDGVNAKLLGCHGPLANRQPGRAFLHASA" CDS complement(join(25247547..25247615,25247843..25247924, 25248340..25248841,25249780..25249789)) /locus_tag="TCM_045581" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042310t1" /codon_start=1 /product="Ribosomal protein L16p/L10e family protein isoform 1" /protein_id="EOY20205.1" /db_xref="Phytozome:Glyma18g05700.1" /db_xref="TAIR:AT1G26910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HUJ2" /translation="MGRRPARCYRQIKNKPYPKSRYCRGVPDSKIRIYDVGMKKKGVD EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKM LSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCKDSNSHHAQEALRRAKFKFP GRQKIIVSRKWGFTKYSRADYLRWKSENRIVPDGVNAKLLGCHGPLANRQPGRAFLHA SA" gene complement(25249945..25255415) /locus_tag="TCM_045582" /note="dbxref CacaoGD:Thecc1EG045582" mRNA complement(join(25249945..25250015,25250138..25250625, 25250717..25251035,25251272..25251342,25252128..25254281, 25255304..25255415)) /locus_tag="TCM_045582" /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g33560.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029542001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc363t4" mRNA complement(join(25250043..25250625,25250717..25250840, 25250960..25251035,25251272..25251342,25252128..25254709)) /locus_tag="TCM_045582" /product="Pentatricopeptide repeat superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g33560.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029542001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc363t4; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc363t4" CDS complement(join(25252224..25254281,25255304..25255333)) /locus_tag="TCM_045582" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /protein_id="EOY20207.1" /db_xref="Phytozome:GSVIVT01029542001" /db_xref="TAIR:AT1G16830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SS02" /translation="MKWICHLLVFLSLLFFSFNFITSHLLQHFYLSFCTLINMLWRYN RGFLHSKPRTQILKVLPFVLVRHFSSPEVCSTDKSQSFSWEKRRLTITPQIVHSTLVN CPSNLIALGFFLWCAKQPNYFHDGEAFDCMVNVLTQLTKKYVTVRSIVGELETVGCVI KPQTFLLLLRIYWRGGLYGMVFETFEEMATVGFTPNTFARNVIMDVLFKIGHVDVAIK VLKETGFPNFLTFNTALCNLCKLRDLSNMKYVIRRMFREGHYPNVRTLEMILNCFCKM GRLAEAYQVLSLMLILGVSVSVNAWSLLIDGFCRLRQPDMANDLFIKMLGTGCSPNVV IYTTLIKGFLDSQMVSTAFSILNRMESDGYVPDLILCNVLIDCLSKIGRYDDAFDVFV SLPERKLLPDSYTFCSLLSNICLSRRFSLLPKIASGLAIEGDLVVCNSLLNYFCKAGY PLHAVELYDYMLDRGFTPDKYSFVGLLSGLCGARRIDEAVNVYQSIIMYCPGLDAHVH TIIIDRLIRVGKYHRAIKLFRRALVEKYPLDVVSYNVAIFGLLKSGRVGEAFTLYSQM KELGVLPNAHTYNLVISGFCKERDLKMVKQLLQEISEAEVELDHNTVNSVTKLLFRSY PYPSALNQFIEMWNSGLIPDEAMYAQFSKGPAYGVNVGDAHHSFLKTYLRDKLLVDSS GSDDIPYVAASVG" CDS complement(25252224..25254197) /locus_tag="TCM_045582" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 2" /protein_id="EOY20208.1" /db_xref="Phytozome:GSVIVT01029542001" /db_xref="TAIR:AT1G16830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SS02" /translation="MLWRYNRGFLHSKPRTQILKVLPFVLVRHFSSPEVCSTDKSQSF SWEKRRLTITPQIVHSTLVNCPSNLIALGFFLWCAKQPNYFHDGEAFDCMVNVLTQLT KKYVTVRSIVGELETVGCVIKPQTFLLLLRIYWRGGLYGMVFETFEEMATVGFTPNTF ARNVIMDVLFKIGHVDVAIKVLKETGFPNFLTFNTALCNLCKLRDLSNMKYVIRRMFR EGHYPNVRTLEMILNCFCKMGRLAEAYQVLSLMLILGVSVSVNAWSLLIDGFCRLRQP DMANDLFIKMLGTGCSPNVVIYTTLIKGFLDSQMVSTAFSILNRMESDGYVPDLILCN VLIDCLSKIGRYDDAFDVFVSLPERKLLPDSYTFCSLLSNICLSRRFSLLPKIASGLA IEGDLVVCNSLLNYFCKAGYPLHAVELYDYMLDRGFTPDKYSFVGLLSGLCGARRIDE AVNVYQSIIMYCPGLDAHVHTIIIDRLIRVGKYHRAIKLFRRALVEKYPLDVVSYNVA IFGLLKSGRVGEAFTLYSQMKELGVLPNAHTYNLVISGFCKERDLKMVKQLLQEISEA EVELDHNTVNSVTKLLFRSYPYPSALNQFIEMWNSGLIPDEAMYAQFSKGPAYGVNVG DAHHSFLKTYLRDKLLVDSSGSDDIPYVAASVG" gene complement(25255552..25257804) /locus_tag="TCM_045583" /note="dbxref CacaoGD:Thecc1EG045583" mRNA complement(join(25255552..25255932,25257554..25257804)) /locus_tag="TCM_045583" /product="Cytochrome b-c1 complex subunit 8" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400053037" /inference="similar to AA sequence:Phytozome:POPTR_0019s15260.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4959t1" CDS complement(join(25255884..25255932,25257554..25257723)) /locus_tag="TCM_045583" /codon_start=1 /product="Cytochrome b-c1 complex subunit 8" /protein_id="EOY20209.1" /db_xref="Phytozome:POPTR_0019s15260.1" /db_xref="TAIR:AT3G10860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P46269" /translation="MGKHPAKMRAVIYTLSPFQQNIMSGLWKDLPSKITHKVTENWIS ATLLLGPLVGTYTYVQNYQEKEKLAHRY" gene 25258785..25262311 /locus_tag="TCM_045584" /note="dbxref CacaoGD:Thecc1EG045584" mRNA join(25258785..25259225,25259311..25259433, 25259528..25259689,25259807..25259885,25260341..25260454, 25261053..25261229,25261457..25262311) /locus_tag="TCM_045584" /product="Metallo-hydrolase/oxidoreductase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s09090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019986t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s09090.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4908t1" CDS join(25259179..25259225,25259311..25259433, 25259528..25259689,25259807..25259885,25260341..25260454, 25261053..25261229,25261457..25261531) /locus_tag="TCM_045584" /note="paralog of Thecc1EG019986t1" /codon_start=1 /product="Metallo-hydrolase/oxidoreductase superfamily protein" /protein_id="EOY20210.1" /db_xref="Phytozome:POPTR_0019s09090.1" /db_xref="TAIR:AT3G10850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q16775" /translation="MKILEVPCLEDNYSYLIIDESTKEAAAVDPAEPQKVVEAANQQG VVLKLVLTTHHHWDHAGGNDKIKELVPGIKVYGGSLDNVKGCTDQLQNGDNLQLSSHI NVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCGKFFEGTAEQMYQSLCVT LGSLPKPTRVFCGHEYTVKNLQFALTVEPKNARIQQKLAWATSQRQAGLPTIPSTIEE ELETNPFMRVDLPELQGRIGCQSPVEALREIRRMKDNWRG" gene 25262613..25268899 /locus_tag="TCM_045585" /note="dbxref CacaoGD:Thecc1EG045585" mRNA join(25262613..25263510,25264560..25264636, 25264733..25264901,25265303..25265391,25265565..25265729, 25265857..25265934,25266571..25266674,25268038..25268437) /locus_tag="TCM_045585" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047988" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019639t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029861001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7201t3" mRNA join(25262833..25263510,25264560..25264636, 25264733..25264901,25265303..25265391,25265565..25265729, 25265857..25265937,25266571..25266674,25268038..25268899) /locus_tag="TCM_045585" /product="RING/U-box superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047988" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019639t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029861001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7201t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7201t3" CDS join(25263000..25263510,25264560..25264636, 25264733..25264901,25265303..25265391,25265565..25265729, 25265857..25265937,25266571..25266674,25268038..25268143) /locus_tag="TCM_045585" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019639t1" /codon_start=1 /product="RING/U-box superfamily protein isoform 2" /protein_id="EOY20212.1" /db_xref="Phytozome:GSVIVT01029861001" /db_xref="TAIR:AT5G01960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5VQF9" /translation="METSPPISGPPSPSPTSSSSVTSSSGGDTSDSSRSFAIQVPALN LFRSPLSLLLEYSGIFSNPTLNQPRGVLVNTDLQPPANAASGAGEVSIQIIGPARAEE DNAQTSLDHDGVEEDDPLTGSSTSNEERSSNSSYQMQSYDVQRIARWFEHILPFSLLL LLVFIREHLQGFVVMIWVTIVMFKSNVILQKQTALKGERKNAVLITYSVLFMLHVIGV YWWYRDNDLLYPLVMLPPKTIPPFWHAIFIILVNDAMVRQAVMAFKCVLLIYYKNGRG HNFRRQGQVLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTAV IEKVQSFFAALKALSQKEVHYGSYATLEQVVNEAGDLCAICQEKMQAPILLRCKHIFC EDCVSEWFERERTCPLCRAVIKAPDLRSFGDGSTSLFFQLF" CDS join(25263000..25263510,25264560..25264636, 25264733..25264901,25265303..25265391,25265565..25265729, 25265857..25265934,25266571..25266674,25268038..25268143) /locus_tag="TCM_045585" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019639t1" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY20211.1" /db_xref="Phytozome:GSVIVT01029861001" /db_xref="TAIR:AT5G01960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5VQF9" /translation="METSPPISGPPSPSPTSSSSVTSSSGGDTSDSSRSFAIQVPALN LFRSPLSLLLEYSGIFSNPTLNQPRGVLVNTDLQPPANAASGAGEVSIQIIGPARAEE DNAQTSLDHDGVEEDDPLTGSSTSNEERSSNSSYQMQSYDVQRIARWFEHILPFSLLL LLVFIREHLQGFVVMIWVTIVMFKSNVILQKQTALKGERKNAVLITYSVLFMLHVIGV YWWYRDNDLLYPLVMLPPKTIPPFWHAIFIILVNDAMVRQAVMAFKCVLLIYYKNGRG HNFRRQGQVLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTAV IEKVQSFFAALKALSQKEVHYGSYATLEQVNEAGDLCAICQEKMQAPILLRCKHIFCE DCVSEWFERERTCPLCRAVIKAPDLRSFGDGSTSLFFQLF" gene 25268881..25269947 /locus_tag="TCM_045586" /note="dbxref CacaoGD:Thecc1EG045586" mRNA 25268881..25269947 /locus_tag="TCM_045586" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.37 coverage" CDS 25269343..25269579 /locus_tag="TCM_045586" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20213.1" /translation="MAKVGGVRMRIQFMDCIYLSEIIAEGVERGRLLKELGLISKQNG HESVCSTLSLRLKDPTPSKIAGFCTGLIPLKSSF" mobile_element 25269803..25269838 /note="source:scaffold_4_CACTA_0490 3047 3163" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25269839..25269929) /note="source:INTACT289_F14_scaffold_4-int 1366 1442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25269871..25269940) /note="source:scaffold_1_CACTA_0006 8429 8498" /mobile_element_type="transposon:TIR/CACTA" gene 25273543..25274975 /locus_tag="TCM_045588" /note="dbxref CacaoGD:Thecc1EG045588" mRNA 25273543..25274975 /locus_tag="TCM_045588" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS 25273753..25274043 /locus_tag="TCM_045588" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20214.1" /translation="MCVSKYRLRLKYYIFIYMLSKLESSGVGFGYRGGEVHLEPSFLL SSHLKNCAQKLEFHYFMQLKHPNGFGWFLSLFKLALHLHADALHLQTPHAMH" mobile_element 25274090..25274130 /note="source:CACAO_M_S_E146340_F96_scaffold_12 8550 8592" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25275662..25279207 /locus_tag="TCM_045589" /note="dbxref CacaoGD:Thecc1EG045589" mRNA join(25275662..25276929,25277272..25277917, 25278654..25279207) /locus_tag="TCM_045589" /product="Autophagy 18C isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s09110.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004587t1" /inference="similar to AA sequence:ricco:29729.m002396" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:PASA:2:TSA:puevd3b043968t1a2; inference alignment:Newbler:10:TSA:cgbaB_g05856t00001" mRNA join(25275665..25275774,25275914..25276929, 25277272..25277530,25277794..25277917,25278663..25278991) /locus_tag="TCM_045589" /product="Autophagy 18C isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s09110.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004587t1" /inference="similar to AA sequence:ricco:29729.m002396" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc281t2_C2; inference alignment:Newbler:10:TSA:cgbaB_g05856t00001" mRNA join(25275665..25275774,25275914..25276929, 25277272..25277530,25277872..25277917,25278654..>25278690) /locus_tag="TCM_045589" /product="Autophagy 18C isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s09110.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004587t1" /inference="similar to AA sequence:ricco:29729.m002396" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8299t3; inference alignment:Newbler:10:TSA:cgbaB_g05856t00001" mRNA join(25275693..25275774,25275914..25276929, 25277272..25277530,25277794..25277917,25278654..25278992) /locus_tag="TCM_045589" /product="Autophagy 18C isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s09110.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004587t1" /inference="similar to AA sequence:ricco:29729.m002396" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05856t00001" CDS join(25276171..25276929,25277272..25277530, 25277794..25277917,25278654..25278747) /locus_tag="TCM_045589" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29729.m002396; paralog of Thecc1EG004587t1" /codon_start=1 /product="Autophagy 18C isoform 1" /protein_id="EOY20215.1" /db_xref="TAIR:AT2G40810.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AS72" /translation="MTSTLSTSPSFLPTPSIEPPQPPFSGGGDPSSFTHHDLPDIDQT ELLSVSWNQDYGCFAAGTSRGFRIYNCEPFKETFRRDLKSGGFKIVEMLFRCNILALV GGGSNSQYPSNKVIIWDDHQSRCIGEFAFRSDVRAVKLRRDRIVVVLEHKIYVYSFMD LKLLHQIETLANPRGLCCLSHHSNTSVLACPGLHRGQVRVEHFGLNMMKLINAHDSHI ACLTLTLDGLLLATASTRGTLVRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLA VSSDKGTVHIFNLRVRVFGEDSSCQPSSVQGPAIFHQNSSTSLDSLISPSTGANPGSS LSFMRGVLPKYFSSEWSFAQFHLPEDTQFIAAFGSQNTVIVVGMDASFYRCSFDPVHG GEMMQQEYVRFLKTDSRPR" CDS join(25276171..25276929,25277272..25277530, 25277794..25277917,25278663..25278747) /locus_tag="TCM_045589" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29729.m002396; paralog of Thecc1EG004587t1" /codon_start=1 /product="Autophagy 18C isoform 3" /protein_id="EOY20217.1" /db_xref="TAIR:AT2G40810.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AS72" /translation="MTSTLSTSPSFLPTPSIEPPQPPFSGGGDPSSFTHHDLPDIDQT ELLSVSWNQDYGCFAAGTSRGFRIYNCEPFKETFRRDLKSGGFKIVEMLFRCNILALV GGGSNSQYPSNKVIIWDDHQSRCIGEFAFRSDVRAVKLRRDRIVVVLEHKIYVYSFMD LKLLHQIETLANPRGLCCLSHHSNTSVLACPGLHRGQVRVEHFGLNMMKLINAHDSHI ACLTLTLDGLLLATASTRGTLVRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLA VSSDKGTVHIFNLRVRVFGEDSSCQPSSVQGPAIFHQNSSTSLDSLISPSTGANPGSS LSFMRGVLPKYFSSEWSFAQFHLPEDTQFIAAFGSQNTVIVVGMDARCSFDPVHGGEM MQQEYVRFLKTDSRPR" CDS join(25276171..25276929,25277272..25277530, 25277872..25277917,25278654..>25278690) /locus_tag="TCM_045589" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29729.m002396; paralog of Thecc1EG004587t1" /codon_start=1 /product="Autophagy 18C isoform 2" /protein_id="EOY20216.1" /db_xref="TAIR:AT2G40810.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AS72" /translation="MTSTLSTSPSFLPTPSIEPPQPPFSGGGDPSSFTHHDLPDIDQT ELLSVSWNQDYGCFAAGTSRGFRIYNCEPFKETFRRDLKSGGFKIVEMLFRCNILALV GGGSNSQYPSNKVIIWDDHQSRCIGEFAFRSDVRAVKLRRDRIVVVLEHKIYVYSFMD LKLLHQIETLANPRGLCCLSHHSNTSVLACPGLHRGQVRVEHFGLNMMKLINAHDSHI ACLTLTLDGLLLATASTRGTLVRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLA VSSDKGTVHIFNLRVRVFGEDSSCQPSSVQGPAIFHQNSSTSLDSLISPSTGANPGSS LSFMRAFGSQNTVIVVGMDASFYRCSFDPVHGG" CDS join(25276171..25276929,25277272..25277556) /locus_tag="TCM_045589" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29729.m002396; paralog of Thecc1EG004587t1" /codon_start=1 /product="Autophagy 18C isoform 4" /protein_id="EOY20218.1" /db_xref="TAIR:AT2G40810.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AS72" /translation="MTSTLSTSPSFLPTPSIEPPQPPFSGGGDPSSFTHHDLPDIDQT ELLSVSWNQDYGCFAAGTSRGFRIYNCEPFKETFRRDLKSGGFKIVEMLFRCNILALV GGGSNSQYPSNKVIIWDDHQSRCIGEFAFRSDVRAVKLRRDRIVVVLEHKIYVYSFMD LKLLHQIETLANPRGLCCLSHHSNTSVLACPGLHRGQVRVEHFGLNMMKLINAHDSHI ACLTLTLDGLLLATASTRGTLVRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLA VSSDKGTVHIFNLRVRVFGEDSSCQPSSVQGPAIFHQNSSTSLDSLISPSTGANPGSS LSFMRGNKYNFPL" gene complement(25279536..25282836) /locus_tag="TCM_045590" /note="dbxref CacaoGD:Thecc1EG045590" mRNA complement(join(25279536..25280060,25280697..25280840, 25280941..25280995,25281114..25281139,25281605..25281863, 25281980..25282071,25282159..25282267,25282421..25282836)) /locus_tag="TCM_045590" /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002398" /inference="similar to AA sequence:Phytozome:POPTR_0019s09370.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4909t3" mRNA complement(join(25279620..25280060,25280697..25280840, 25281605..25281863,25281980..25282071,25282159..25282267, 25282421..25282801)) /locus_tag="TCM_045590" /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29729.m002398" /inference="similar to AA sequence:Phytozome:POPTR_0019s09370.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00732t00004; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4909t3; inference alignment:Newbler:10:TSA:cgbaB_g00716t00001" mRNA complement(join(25279737..25280060,25280697..25280840, 25280941..25280995,25281612..25281863,25281980..25282071, 25282159..25282267,25282421..25282827)) /locus_tag="TCM_045590" /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29729.m002398" /inference="similar to AA sequence:Phytozome:POPTR_0019s09370.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00716t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4909t3; inference alignment:Newbler:10:TSA:cgbaB_g00716t00001" CDS complement(join(25279965..25280060,25280697..25280840, 25280941..25280995,25281612..25281863,25281980..25282071, 25282159..25282267,25282421..25282776)) /locus_tag="TCM_045590" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 2" /protein_id="EOY20220.1" /db_xref="Phytozome:POPTR_0019s09370.1" /db_xref="TAIR:AT3G56460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PG84" /translation="MEALLCRRLGDPASSAPDGNNPESSPIVVSRNHPIPDLDSPTAV RVKVKATSLNYANYLQILGKYQEKPPLPFIPGSDYAGTVDAVGPAVTKFKVGDRVCSF ASLGSYATFIVQDQSHLFGVPKGCDLVAAAALPVAFGTSHVALVHRANLTSSQVLLVL GAAGGVGVAAVQIGKVCGAVVIAVARGAEKVQFLKSLGVDHVVDLSNQHVTASVKEFL KSRNLKGVDVLYDPVGGKLTKETMKLLNWGAQILVIGFASGEIPVIPANITLVNYSFN VAEVGGQRHVMKNWTVHGLYWGSYRTHRPAVLEDSIRELLSWVERGLITIHISHIYSL SEANHAFSAIKDRKAIGKVMIAFDDLGSARSKL" CDS complement(join(25279965..25280060,25280697..25280840, 25281605..25281863,25281980..25282071,25282159..25282267, 25282421..25282776)) /locus_tag="TCM_045590" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 3" /protein_id="EOY20221.1" /db_xref="Phytozome:POPTR_0019s09370.1" /db_xref="TAIR:AT3G56460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PG84" /translation="MEALLCRRLGDPASSAPDGNNPESSPIVVSRNHPIPDLDSPTAV RVKVKATSLNYANYLQILGKYQEKPPLPFIPGSDYAGTVDAVGPAVTKFKVGDRVCSF ASLGSYATFIVQDQSHLFGVPKGCDLVAAAALPVAFGTSHVALVHRANLTSSQVLLVL GAAGGVGVAAVQIGKVCGAVVIAVARGAEKVQFLKSLGVDHVVDLSNQHVTASVKEFL KSRNLKGVDVLYDPVGGKLTKETMKLLNWGAQILVIGFASGEIPVIPANITLVKNWTV HGLYWGSYRTHRPAVLEDSIRELLSWVERGLITIHISHIYSLSEANHAFSAIKDRKAI GKVMIAFDDLGSARSKL" CDS complement(join(25279965..25280060,25280697..25280840, 25280941..25280995,25281114..25281139,25281605..25281863, 25281980..25282071,25282159..25282267,25282421..25282776)) /locus_tag="TCM_045590" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="GroES-like zinc-binding alcohol dehydrogenase family protein isoform 1" /protein_id="EOY20219.1" /db_xref="Phytozome:POPTR_0019s09370.1" /db_xref="TAIR:AT3G56460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PG84" /translation="MEALLCRRLGDPASSAPDGNNPESSPIVVSRNHPIPDLDSPTAV RVKVKATSLNYANYLQILGKYQEKPPLPFIPGSDYAGTVDAVGPAVTKFKVGDRVCSF ASLGSYATFIVQDQSHLFGVPKGCDLVAAAALPVAFGTSHVALVHRANLTSSQVLLVL GAAGGVGVAAVQIGKVCGAVVIAVARGAEKVQFLKSLGVDHVVDLSNQHVTASVKEFL KSRNLKGVDVLYDPVGGKLTKETMKLLNWGAQILVIGFASGEIPVIPANITLVKFEYL INLLSVNYSFNVAEVGGQRHVMKNWTVHGLYWGSYRTHRPAVLEDSIRELLSWVERGL ITIHISHIYSLSEANHAFSAIKDRKAIGKVMIAFDDLGSARSKL" mobile_element 25281233..25281309 /note="source:INTACT319_F3_scaffold_1-int 5703 5779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25281253..25281315) /note="source:CACAO_M_E22186_F143_scaffold_3 9947 10006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25281269..25281319 /note="source:CACAO_Mariner_E25_scaffold_1 3188 3238" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 25282601..25286761 /locus_tag="TCM_045592" /note="dbxref CacaoGD:Thecc1EG045592" mRNA join(25282601..25283268,25283573..25284069, 25284268..25285073,25285193..25285310) /locus_tag="TCM_045592" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s09240.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s09240.1" /note="transcript variant 2; alternatively spliced; quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9473t6; inference alignment:Newbler:10:TSA:cgbaL_g00697t00002" mRNA join(25282916..25283383,25283577..25284069, 25284268..25284607,25284975..25285073,25285193..25285313, 25285796..25286761) /locus_tag="TCM_045592" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s09240.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s09240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00697t00002" CDS join(25283047..25283383,25283577..25284069, 25284268..25284607,25284975..25285073,25285193..25285313, 25285796..25286010) /locus_tag="TCM_045592" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY20222.1" /db_xref="Phytozome:POPTR_0013s09240.1" /db_xref="TAIR:AT3G10840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC10" /translation="MNPEKVMSGGGLVFQFHFQFQHSIVNGIVIGSNNQSCQTFASSN SHSKRRCPTLATTITHAFPLSGSGSGAEYPYASSNSHSERRCPTLATTITHAFSLPGS GSGSGAEYPAGELMDASRKQQKKRIAGIDQDDLLDPKLLADPDSCFCEFRGVEIHHKL YDAQSYSSDNSLLSHSQDAQDQSPTPSLKLGLPLVLLHGFGASVFSWNKVMKRLAHLT GSKVLAFDRPAFGLTSRLNTFGTKISDAKPLNPYSMAFSVLASLYFIDFLATEKAILV GHSAGSLVALDAYFEAPERIAALIFVAPAILAPLAIPKIVEGDLSERNNQTKRDRSDS NNLGKPLFKLFEILSKFTKYVTEAIMQMIKRMGGVLNSLYKKALSSILRSALGVMLVR MIIDKFGVAAVRTAWYDSKEVNEHIVDGYTKPLRAKDWDRALVEFTAAMLINGKSEMK PPLAKRLHEISCPVLIVTGDTDRIVPAWNAKRLSRAIPQSKLEVIKNCGHLPHEEKVE EFVRVVEKFLQRAFGGSEEHSLQAIT" CDS join(25283047..25283268,25283573..25284069, 25284268..25284790) /locus_tag="TCM_045592" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY20223.1" /db_xref="Phytozome:POPTR_0013s09240.1" /db_xref="TAIR:AT3G10840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HC10" /translation="MNPEKVMSGGGLVFQFHFQFQHSIVNGIVIGSNNQSCQTFASSN SHSKRRCPTLATTITHAFPLSGSGSGAEYPVGELMDASRKQQKKRIAGIDQDDLLDPK LLADPDSCFCEFRGVEIHHKLYDAQSYSSDNSLLSHSQDAQDQSPTPSLKLGLPLVLL HGFGASVFSWNKVMKRLAHLTGSKVLAFDRPAFGLTSRLNTFGTKISDAKPLNPYSMA FSVLASLYFIDFLATEKAILVGHSAGSLVALDAYFEAPERIAALIFVAPAILAPLAIP KIVEGDLSERNNQTKRDRSDSNNLGKPLFKLFEILSKFTKYVTEAIMQMIKRMGGVLN SLYKKALSSILRSALGVMLVLTSFWMILQYKQLELLIGLCQLNWIFFKYHKCHTTLML SAFVYNCCKWFCYKKITNIFN" gene 25285283..25286495 /locus_tag="TCM_045593" /note="dbxref CacaoGD:Thecc1EG045593" mRNA join(25285283..25285313,25285796..25286495) /locus_tag="TCM_045593" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene33684" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 25286042..25286449 /locus_tag="TCM_045593" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20224.1" /translation="MVKGRNFWLIPLPQSCIWIWRKTKKLRSTAIPLIKHVIDNGRRT IFWIDNWHSQGPLLHLYSSSIMLASGLSKEAGVDNVIRNNSRHWPQTCFSTLQDIQTA TDGIPSPDFQQADSLFVWHQSVVNSPLPRLGNI" gene complement(25286927..25288476) /locus_tag="TCM_045594" /note="dbxref CacaoGD:Thecc1EG045594" mRNA complement(join(25286927..25287792,25287965..25288476)) /locus_tag="TCM_045594" /product="Calcium-dependent lipid-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s09350.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s09350.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7257t3" CDS complement(join(25287272..25287792,25287965..25288415)) /locus_tag="TCM_045594" /codon_start=1 /product="Calcium-dependent lipid-binding family protein" /protein_id="EOY20225.1" /db_xref="Phytozome:POPTR_0019s09350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1Q5" /translation="MGKIWVEVCLISARGLRRSSSFWKLQWFAVGWIDPNNKYCTRID ASGNSNPVWKTKFAALVDDSNFQDMMLNVEVYSREPIFLRERLQGTATVALKEFLAKH SNNSSSSGAGTEKVGSYQLRKRNSNKPQGFVDVSIRISEERDEPSSFPGNEGGLVLMD HRTNIALPTEGGSGHTYPAGAAQLPLAPLPRPQNQFQANTPHTHSAPHPTNYYNSSLG DPSVPSASGPSYRPPKTPPPPPPPSNVGYIPTFLPRTDHVTGTYLNMPSSAAAPGSGP RPGFAMGLGAGALAAGAVIFGDDFTSGFDVPAGLQDASLTISMDPPF" gene complement(25288771..25291797) /locus_tag="TCM_045595" /note="dbxref CacaoGD:Thecc1EG045595" mRNA complement(join(25288771..25289164,25289817..25289873, 25290323..25290381,25291006..25291692)) /locus_tag="TCM_045595" /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020671" /inference="similar to AA sequence:Phytozome:POPTR_0019s09340.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09094t00001; inference alignment:Newbler:10:TSA:cgbaP2_g09094t00001" mRNA complement(join(25288774..25289164,25289817..25289873, 25290323..25290381,25290994..25291740)) /locus_tag="TCM_045595" /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020671" /inference="similar to AA sequence:Phytozome:POPTR_0019s09340.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00283t00001; inference alignment:Newbler:10:TSA:cgbaP2_g09094t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc715t2" CDS complement(join(25288978..25289164,25289817..25289873, 25290323..25290381,25291006..25291590)) /locus_tag="TCM_045595" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 1" /protein_id="EOY20226.1" /db_xref="Phytozome:POPTR_0019s09340.1" /db_xref="TAIR:AT4G19985.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1Q6" /translation="MVVVAAAAISGTSCIQIMMIQGGGGYPSKSMELRWISSRSRRKN LNPNPNSREFGSLKSKAPPLMMPIYISTDPSHINLQHLSELYSSCNHSGHRFPEVDPN TGIVEEAMDLDKLRIALSHSCVIVSVFCKPQHVDVTNTAKQIQNQENQKQMSKGFVGD LMESVMPVTPSDAKLVGFGRAVSDLGLTASIYDVMVSPSLQGMGIGTIIVKRIVRMLT SSDIYDIVALCSRKERFFFKACGFRDDILGSTTMMYTRTVSTSFEGDQMVTRAGRKLL LAPTLREPFASSKTSKPES" CDS complement(join(25288978..25289164,25289817..25289873, 25290323..25290381,25290994..25291590)) /locus_tag="TCM_045595" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 2" /protein_id="EOY20227.1" /db_xref="Phytozome:POPTR_0019s09340.1" /db_xref="TAIR:AT4G19985.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1Q6" /translation="MVVVAAAAISGTSCIQIMMIQGGGGYPSKSMELRWISSRSRRKN LNPNPNSREFGSLKSKAPPLMMPIYISTDPSHINLQHLSELYSSCNHSGHRFPEVDPN TGIVEEAMDLDKLRIALSHSCVIVSVFCKPQHVDVTNTAKQIQNQENQKQMSKGFVGD LMESVMPVTPSDAKLVGFGRAVSDLGLTASIYDVMVLDLVSPSLQGMGIGTIIVKRIV RMLTSSDIYDIVALCSRKERFFFKACGFRDDILGSTTMMYTRTVSTSFEGDQMVTRAG RKLLLAPTLREPFASSKTSKPES" mRNA complement(join(25289136..25289164,25289817..25289873, 25291006..25291793)) /locus_tag="TCM_045595" /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020671" /inference="similar to AA sequence:frave:gene21393" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc768t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc715t2; inference alignment:Newbler:10:TSA:cgbaP2_g09094t00001" mRNA complement(join(25289850..25289928,25290323..25290381, 25291006..25291797)) /locus_tag="TCM_045595" /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020671" /inference="similar to AA sequence:frave:gene21393" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc715t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc715t2; inference alignment:Newbler:10:TSA:cgbaP2_g09094t00001" CDS complement(join(25289859..25289873,25291006..25291590)) /locus_tag="TCM_045595" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene21393" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 4" /protein_id="EOY20229.1" /db_xref="TAIR:AT4G19985.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T9J7" /translation="MVVVAAAAISGTSCIQIMMIQGGGGYPSKSMELRWISSRSRRKN LNPNPNSREFGSLKSKAPPLMMPIYISTDPSHINLQHLSELYSSCNHSGHRFPEVDPN TGIVEEAMDLDKLRIALSHSCVIVSVFCKPQHVDVTNTAKQIQNQENQKQMSKGFVGD LMESVMPVTPSDAKLVGFGRAVSDLGLTASIYDVMNAHK" CDS complement(join(25289925..25289928,25290323..25290381, 25291006..25291590)) /locus_tag="TCM_045595" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene21393" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 3" /protein_id="EOY20228.1" /db_xref="TAIR:AT4G19985.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940H2" /translation="MVVVAAAAISGTSCIQIMMIQGGGGYPSKSMELRWISSRSRRKN LNPNPNSREFGSLKSKAPPLMMPIYISTDPSHINLQHLSELYSSCNHSGHRFPEVDPN TGIVEEAMDLDKLRIALSHSCVIVSVFCKPQHVDVTNTAKQIQNQENQKQMSKGFVGD LMESVMPVTPSDAKLVGFGRAVSDLGLTASIYDVMVSPSLQGMGIGTIIVKRIVR" mRNA complement(join(25290353..25290391,25291006..25291763)) /locus_tag="TCM_045595" /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020671" /inference="similar to AA sequence:frave:gene21393" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8369t5_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc715t2; inference alignment:Newbler:10:TSA:cgbaP2_g09094t00001" mRNA complement(join(25290353..25290391,25290994..25291763)) /locus_tag="TCM_045595" /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020671" /inference="similar to AA sequence:frave:gene21393" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8369t1_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc715t2; inference alignment:Newbler:10:TSA:cgbaP2_g09094t00001" CDS complement(join(25290377..25290391,25291006..25291590)) /locus_tag="TCM_045595" /note="encoded by transcript variant 6; alternatively spliced; dbxref frave:gene21393" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 6" /protein_id="EOY20231.1" /db_xref="TAIR:AT4G19985.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940H2" /translation="MVVVAAAAISGTSCIQIMMIQGGGGYPSKSMELRWISSRSRRKN LNPNPNSREFGSLKSKAPPLMMPIYISTDPSHINLQHLSELYSSCNHSGHRFPEVDPN TGIVEEAMDLDKLRIALSHSCVIVSVFCKPQHVDVTNTAKQIQNQENQKQMSKGFVGD LMESVMPVTPSDAKLVGFGRAVSDLGLTASIYDVMCLPG" CDS complement(join(25290377..25290391,25290994..25291590)) /locus_tag="TCM_045595" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene21393" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein, putative isoform 5" /protein_id="EOY20230.1" /db_xref="TAIR:AT4G19985.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940H2" /translation="MVVVAAAAISGTSCIQIMMIQGGGGYPSKSMELRWISSRSRRKN LNPNPNSREFGSLKSKAPPLMMPIYISTDPSHINLQHLSELYSSCNHSGHRFPEVDPN TGIVEEAMDLDKLRIALSHSCVIVSVFCKPQHVDVTNTAKQIQNQENQKQMSKGFVGD LMESVMPVTPSDAKLVGFGRAVSDLGLTASIYDVMVLDLCLPG" gene complement(25291954..25309346) /locus_tag="TCM_045596" /note="dbxref CacaoGD:Thecc1EG045596" mRNA complement(join(25291954..25293818,25294691..25294824, 25295025..25295187,25295281..25295349,25295687..25295785, 25295942..25295987,25296135..25296204,25296318..25296357, 25297831..25298172,25309143..25309346)) /locus_tag="TCM_045596" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:28498.m000204.2" /inference="similar to AA sequence:Phytozome:POPTR_0016s14820.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage; weak similarity to Bromodomain protein" CDS complement(join(25291986..25293818,25294691..25294824, 25295025..25295187,25295281..25295349,25295687..25295785, 25295942..25295987,25296135..25296204,25296318..25296357, 25297831..25298058)) /locus_tag="TCM_045596" /note="weak similarity to Bromodomain protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20232.1" /db_xref="Phytozome:POPTR_0016s14820.1" /db_xref="TAIR:AT1G20670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGX7" /translation="MFSGEYRRSPRIVELDARKAQQARSQNKGNGICEVMDGEELDKG EDIVKHKRRRKKVKVRTVQDLIVNSVEYKVQKADTWNVEDQLVNAAMAPSGAALPEKS KLELLLGVLQRRDTHKIFAEPVNPEEVEYYYDVIKEPMDFGTIAKKLNEGSYQRLDEF EHDVFLVSNNAMLFNASNTVYYRQARALKELATRLFHALKTDPENFEAEASMRRIGAG RRKKAEVNSNKKTSIGNAARGYRAERQSDDFEVEKRRTYRPWNTFLSEKASLLSEIYR GSNQLKLDEKVGVGYVESVKRFAKDLGPTAQTTAMKKVGSYIAEALKVWNATTNRQSW TPQMQIPNAAFASKNIKVAPSFRVPSSTPGYQNMSRDKMDILTGFSNGGQASSGNTLN INDALNRGVSQPGSRLESLGDFRGKMTQSASLGFAPSFRVPSNAPGYQNMSGDKMDIQ SGFLNGGQASTCNTLNINDALNRGVSQPGSRLESLGEFPGKLTQSVSLGFAPSVRVSS STPGYQNMSGGEMDIQSGFSNGGQTSTGVTLNINDALNRGVSQPDSRLESLGDFRGKM TQSASLGFAPSLHLLGNSNGSQMFAGETMGAPFSSWNGGKVSAVNNIDINDALNGGKG NPGNRMDFRGKAVQTMGGGLDSGPSFKDYAANQSNGVQLGSWFANYDSGKEKLDFTSS WNTNSNQKELSMMVDTIDVGNAVQTAGQASLGSTMQEFTPTIISGASSSSWLPPSQVL TGLNSSQAIDHMSGIGSHYAGKGLCQKEAIADGEGSRYTINVEQGGQVPDWFKPLEMG PLPLTEYCFQEQTKSPEMTTLMQQKRDIDLLCNAPPLEDWLGSFPNEHGIRASSNASG YERLQPPSRGESSSRAAADRRQKQPMLATEMPKWSWL" gene complement(25302252..25303295) /locus_tag="TCM_045597" /note="dbxref CacaoGD:Thecc1EG045597" mRNA complement(join(25302252..25302787,25302888..25303295)) /locus_tag="TCM_045597" /product="Cytochrome P450, family 714, subfamily A, polypeptide 1, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045598t2" /inference="similar to AA sequence:Phytozome:Glyma04g40280.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(join(25302707..25302787,25302888..25303250)) /locus_tag="TCM_045597" /note="paralog of Thecc1EG045598t2" /codon_start=1 /product="Cytochrome P450, family 714, subfamily A, polypeptide 1, putative" /protein_id="EOY20233.1" /db_xref="Phytozome:Glyma04g40280.1" /db_xref="TAIR:AT5G24910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z79" /translation="MKKQNVITNSEKEIESLNWEIVKERERKCIKAFSLENDLLHLIL ERPLNDQSLGKDSSKCFTVDNCNNMYFTGHKSTAVVSSWCLILLALHLEWQSHILTKV AQVCGEKLPDADSVSHMKIVTMVIQETLHLYPPVAFVSKEALEEI" mobile_element 25305794..25306581 /note="source:scaffold_5_CACTA_0599 8802 9461" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25307387..25308942 /note="source:scaffold_2_CACTA_0263 5449 7019" /mobile_element_type="transposon:TIR/CACTA" gene complement(25312963..25317316) /locus_tag="TCM_045598" /note="dbxref CacaoGD:Thecc1EG045598" mRNA complement(join(25312963..25314026,25314136..25314508, 25315009..25315259,25315370..25315596,25316579..25316946)) /locus_tag="TCM_045598" /product="Cytochrome P450, family 714, subfamily A, polypeptide 1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29848.m004472" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036837t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032871001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4910t1" CDS complement(join(25313601..25314026,25314136..25314508, 25315009..25315259,25315370..25315596,25316579..25316873)) /locus_tag="TCM_045598" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG036837t1" /codon_start=1 /product="Cytochrome P450, family 714, subfamily A, polypeptide 1, putative isoform 1" /protein_id="EOY20234.1" /db_xref="Phytozome:GSVIVT01032871001" /db_xref="TAIR:AT5G24910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z79" /translation="MEDSLSLSLKVISSLALMGVVCFFVHLYNTMWFKSERQRRKLWM QGIRGPWPSFIYGNLPEMQKIQQEAARTPDNDQIVGHDYTSSLFPYFVQWRKEYGPIY TYSTGTRQHLYVNQPELVKEMNQCITLDLGKPSYITKRLAPMLGNGILRSNGLVWAQQ RKIIAPEFFMDKVKVMVGLMVESIQPLVRKWEDSIEAQGGVMADIRVDQDLRGFTAEV IARACFGSSYFKGKEIFSKLRKLQTVISRESFLFGVSGYGLLPMKKQNEITNLEKEIE SLIWETVKERERKCIKASSLEKDLLHLILEGALNDQSLDKDSSKRFIVDNCKNIYFAG HESTAVAASWCLMLLALHPEWQSRILTEVAQVCGDKLPDADSVSHMKIVTMVIQETLR LYPPAAFVSREALEEIQLENVTIPKGVCLWTLIPTLHRDPEIWGSDANEFKPERFNDG VSKACKFPQAYIPFGLGPRLCLGRNLAMVQLKIVLCHIISKFTFSLSPKYRHSPAYKM IVEPGNGVHILIKKI" mRNA complement(join(<25313694..25314026,25314136..25314508, 25315009..25315259,25315376..25315596,25316579..25317316)) /locus_tag="TCM_045598" /product="Cytochrome P450, family 714, subfamily A, polypeptide 1, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29848.m004472" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036837t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032871001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9165t6; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4910t1" mRNA complement(join(<25313694..25314026,25314136..25314508, 25315009..25315259,25315370..25315596,25316579..25317316)) /locus_tag="TCM_045598" /product="Cytochrome P450, family 714, subfamily A, polypeptide 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29848.m004472" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036837t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032871001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9165t15; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4910t1" mRNA complement(join(<25313694..25314026,25314136..25314508, 25315009..25315292,25315370..25315596,25316579..25317316)) /locus_tag="TCM_045598" /product="Cytochrome P450, family 714, subfamily A, polypeptide 1, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29848.m004472" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036837t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032871001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc9165t9; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc10rg4910t1" CDS complement(join(<25313694..25314026,25314136..25314508, 25315009..25315259,25315376..25315596,25316579..25316873)) /locus_tag="TCM_045598" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG036837t1" /codon_start=1 /product="Cytochrome P450, family 714, subfamily A, polypeptide 1, putative isoform 4" /protein_id="EOY20237.1" /db_xref="Phytozome:GSVIVT01032871001" /db_xref="TAIR:AT5G24910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z79" /translation="MEDSLSLSLKVISSLALMGVVCFFVHLYNTMWFKSERQRRKLWM QGIRGPWPSFIYGNLPEMQKIQQEAARTPDNDQIVGHDYTSSLFPYFVQWRKEYGPIY TYSTGTRQHLYVNQPELVKEMNQCITLDLGKPSYITKRLAPMLGNGILRSNGLVWAQQ RKIIAPEFFMDKVMVGLMVESIQPLVRKWEDSIEAQGGVMADIRVDQDLRGFTAEVIA RACFGSSYFKGKEIFSKLRKLQTVISRESFLFGVSGYGLLPMKKQNEITNLEKEIESL IWETVKERERKCIKASSLEKDLLHLILEGALNDQSLDKDSSKRFIVDNCKNIYFAGHE STAVAASWCLMLLALHPEWQSRILTEVAQVCGDKLPDADSVSHMKIVTMVIQETLRLY PPAAFVSREALEEIQLENVTIPKGVCLWTLIPTLHRDPEIWGSDANEFKPERFNDGVS KACKFPQAYIPFGLGPRLCLGRNLAMVQLKIVLCHIISKFT" CDS complement(join(<25313694..25314026,25314136..25314508, 25315009..25315259,25315370..25315596,25316579..25316873)) /locus_tag="TCM_045598" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG036837t1" /codon_start=1 /product="Cytochrome P450, family 714, subfamily A, polypeptide 1 isoform 3" /protein_id="EOY20236.1" /db_xref="Phytozome:GSVIVT01032871001" /db_xref="TAIR:AT5G24910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z79" /translation="MEDSLSLSLKVISSLALMGVVCFFVHLYNTMWFKSERQRRKLWM QGIRGPWPSFIYGNLPEMQKIQQEAARTPDNDQIVGHDYTSSLFPYFVQWRKEYGPIY TYSTGTRQHLYVNQPELVKEMNQCITLDLGKPSYITKRLAPMLGNGILRSNGLVWAQQ RKIIAPEFFMDKVKVMVGLMVESIQPLVRKWEDSIEAQGGVMADIRVDQDLRGFTAEV IARACFGSSYFKGKEIFSKLRKLQTVISRESFLFGVSGYGLLPMKKQNEITNLEKEIE SLIWETVKERERKCIKASSLEKDLLHLILEGALNDQSLDKDSSKRFIVDNCKNIYFAG HESTAVAASWCLMLLALHPEWQSRILTEVAQVCGDKLPDADSVSHMKIVTMVIQETLR LYPPAAFVSREALEEIQLENVTIPKGVCLWTLIPTLHRDPEIWGSDANEFKPERFNDG VSKACKFPQAYIPFGLGPRLCLGRNLAMVQLKIVLCHIISKFT" CDS complement(join(<25313694..25314026,25314136..25314508, 25315009..25315292,25315370..25315596,25316579..25316873)) /locus_tag="TCM_045598" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG036837t1" /codon_start=1 /product="Cytochrome P450, family 714, subfamily A, polypeptide 1, putative isoform 2" /protein_id="EOY20235.1" /db_xref="Phytozome:GSVIVT01032871001" /db_xref="TAIR:AT5G24910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z79" /translation="MEDSLSLSLKVISSLALMGVVCFFVHLYNTMWFKSERQRRKLWM QGIRGPWPSFIYGNLPEMQKIQQEAARTPDNDQIVGHDYTSSLFPYFVQWRKEYGPIY TYSTGTRQHLYVNQPELVKEMNQCITLDLGKPSYITKRLAPMLGNGILRSNGLVWAQQ RKIIAPEFFMDKVKKLGLGPELTKQVMVGLMVESIQPLVRKWEDSIEAQGGVMADIRV DQDLRGFTAEVIARACFGSSYFKGKEIFSKLRKLQTVISRESFLFGVSGYGLLPMKKQ NEITNLEKEIESLIWETVKERERKCIKASSLEKDLLHLILEGALNDQSLDKDSSKRFI VDNCKNIYFAGHESTAVAASWCLMLLALHPEWQSRILTEVAQVCGDKLPDADSVSHMK IVTMVIQETLRLYPPAAFVSREALEEIQLENVTIPKGVCLWTLIPTLHRDPEIWGSDA NEFKPERFNDGVSKACKFPQAYIPFGLGPRLCLGRNLAMVQLKIVLCHIISKFT" gene 25317467..25318645 /locus_tag="TCM_045599" /note="dbxref CacaoGD:Thecc1EG045599" mRNA 25317467..25318645 /locus_tag="TCM_045599" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.49 coverage" CDS 25318074..25318301 /locus_tag="TCM_045599" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20238.1" /translation="MPHLTHVSLIFGPASCHIIICTLNSCVSSPSSFIMQRVSLLLFI ISAVHEPNITYIYIHTSPPVSHWTLVKIPCT" mobile_element complement(25318682..25318786) /note="source:scaffold_4_CACTA_0482 6228 6334" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25318816..25319048) /note="source:scaffold_4_CACTA_0482 6114 6335" /mobile_element_type="transposon:TIR/CACTA" gene 25319790..25324862 /locus_tag="TCM_045600" /note="dbxref CacaoGD:Thecc1EG045600" mRNA join(25319790..25320392,25321361..25321508, 25321618..25321768,25321926..25322051,25322706..25322898, 25323099..25323369,25324127..25324862) /locus_tag="TCM_045600" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032872001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017805t1" /inference="similar to AA sequence:frave:gene21395" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b043978t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g05284t00001" mRNA join(25319790..25320392,25321361..25321508, 25321618..25321768,25321926..25322051,25322156..25322236, 25322706..25322898,25323099..25323369,25324127..25324824) /locus_tag="TCM_045600" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032872001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017805t1" /inference="similar to AA sequence:frave:gene21395" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05284t00001" CDS join(25320195..25320392,25321361..25321508, 25321618..25321768,25321926..25322051,25322156..25322236, 25322706..25322898,25323099..25323369,25324127..25324380) /locus_tag="TCM_045600" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene21395; paralog of Thecc1EG017805t1" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY20239.1" /db_xref="TAIR:AT3G54190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGY6" /translation="MDGGRRIAVSPRPCSGRRIVASKKRGRADSFVNSVKKLQRREIC SKRHRAFSITDAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVF ALAQSGVCAAFSRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLKC RSTRIEYIRRGQPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY TMLYSISDKNVQEIKISPGIMLLIFTKVGGHVPLKILSIEDGTVLKSFSHLLHRNKKV DFIEQFNEKLLVKQENENLQILDVRNTELTEVDKIEFKTPSAFIFLYENQLFLTFRNR TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLSEGNGSI NISNILTGKCLAKIRASNSFPVENECSYGYGCSSSKKQSNMSRIRSTVAEALEDITAL FYDEERNEIYTGNRHGLVHVWSN" CDS join(25320195..25320392,25321361..25321508, 25321618..25321768,25321926..25322051,25322706..25322898, 25323099..25323369,25324127..25324380) /locus_tag="TCM_045600" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene21395; paralog of Thecc1EG017805t1" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY20240.1" /db_xref="TAIR:AT3G54190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGY6" /translation="MDGGRRIAVSPRPCSGRRIVASKKRGRADSFVNSVKKLQRREIC SKRHRAFSITDAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVF ALAQSGVCAAFSRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLKC RSTRIEYIRRGQPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSPGIMLLIFTK VGGHVPLKILSIEDGTVLKSFSHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNT ELTEVDKIEFKTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNT NNIYITSDQDLIISYCKADSDDPLSEGNGSINISNILTGKCLAKIRASNSFPVENECS YGYGCSSSKKQSNMSRIRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN" mobile_element 25324895..25324946 /note="source:CACAO_M_E34540_F17_scaffold_5 1236 1287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25324907..25324964 /note="source:scaffold_5_CACTA_0596 1745 1802" /mobile_element_type="transposon:TIR/CACTA" gene 25325636..25345836 /locus_tag="TCM_045601" /note="dbxref CacaoGD:Thecc1EG045601" mRNA join(25325636..25326059,25326237..25326398, 25327248..25327433,25327551..25327662,25327742..25327775, 25328132..25328169,25328302..25328336,25328445..25328597, 25328759..25331283,25331543..25331620,25331771..25332615) /locus_tag="TCM_045601" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032875001" /inference="similar to AA sequence:Phytozome:POPTR_0019s09240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7301t3" mRNA join(25325859..25326059,25326237..25326398, 25327248..25327433,25327551..25327662,25327742..25327775, 25328132..25328169,25328302..25328336,25328445..25328597, 25328759..25331283,25331543..25331621,25331771..25332063, 25345643..25345836) /locus_tag="TCM_045601" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032875001" /inference="similar to AA sequence:Phytozome:POPTR_0019s09240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7301t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7301t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17416t1" mRNA join(25325859..25326059,25326237..25326398, 25327248..25327433,25327551..25327662,25327742..25327775, 25328132..25328169,25328299..25328336,25328445..25328597, 25328759..25331283,25331543..25331620,25331771..25332569) /locus_tag="TCM_045601" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032875001" /inference="similar to AA sequence:Phytozome:POPTR_0019s09240.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7301t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7301t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17416t1" CDS join(25326328..25326398,25327248..25327433, 25327551..25327662,25327742..25327775,25328132..25328169, 25328299..25328336,25328445..25328597,25328759..25331283, 25331543..25331620,25331771..25331838) /locus_tag="TCM_045601" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY20243.1" /db_xref="Phytozome:POPTR_0019s09240.1" /translation="MDGGIHGDAPLDYATIQILPSQNRYEAYTCHDNKVEKLAVGVLE KLLPHLPGVSNLYTKGFNANFKLQPPENLKSAAWFTKSTLSRFLDIVGSTDLVDTVKV IEGEMSQLEEARKFHLSLYAKGHEDHIESSETDICKSVDVVLASNQSKVQNSSSDTSK NELLRAMDSRLTALRSELVAAFNQAVGETCSYEEITHLAKFSENFGANDLKNFLCMFL ELSPKSQAANPPDDEKSSFSRASVNDSIIKTDGNSQISKPVCAETPVKYGVSPAKVAQ VERQSSTESEESSNSSDENQMSAERSRALIRSASPRRSASPMRRVQIGRSGSRRAPAL TIKSLSYFPAREKIFSHRDVASDDSEEEGSGQSKKPEGNVRRMSVQDAINLFESKQRD QVSDMPKKNSLTNISLGASKSVLRRWSAGMGDSSSQCQLQNASEDPVPEPSDNVIDND IMERSAGVDLESDSRSGGQIINETIDVNLERLDESSCSPIDVQEVTDKIQEDEANERS NSSAEWSRQKEVELNQMFKKMMENQPVSCRKPQTNIRQNLPPEQRGGFYDHYKAKRDQ KLRGENSGKRAEKEAKFRAMQKVLDERKAEMASKNVNNFSKKDPLTKSQKSVKNPQKV LKSPSQPANPRKEATKPSTVKKVSSRTSPLPATRKSWPSTPSPRTTGISPAKTSGGIS SAGTTPTHRKPQSAQSVPRPSSKVESAQPERKNVKGTQADKRGLKSVNEKQQQRLMKG SKTPKTKVAAAPGDSSSMVPAKPSLYNKMTKKSSVVPLEAKPFLRKGSGFTSSVGLVN KIKNPSPLEDSLKTTENSIDTQESDVIVNASVLVNEHQDQDISSLDHCDDDIQLETQV NGHQKSDVIESIDELAPDVDDGLKNIAESSKCEEELTISPAAWVEIEEHQDLPNQCDD NTGENTSSASIAPVGSASPRVRHSLSQMLQEESSEADTTEWGNAENPPAMVYQKDAPK GLKRLLKFARKSKGDANITGWSSPSVFSEGEDDAEESKAINKRNADNLLRKAALQAKN YGQQKMSCEGYENHLGAHELPSAQSGISTFDAHKMHKGSVSTAASTTKGTRSFFSLSA FRGSKPSEMKLR" CDS join(25326328..25326398,25327248..25327433, 25327551..25327662,25327742..25327775,25328132..25328169, 25328302..25328336,25328445..25328597,25328759..25331283, 25331543..25331620,25331771..25331838) /locus_tag="TCM_045601" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20241.1" /db_xref="Phytozome:POPTR_0019s09240.1" /translation="MDGGIHGDAPLDYATIQILPSQNRYEAYTCHDNKVEKLAVGVLE KLLPHLPGVSNLYTKGFNANFKLQPPENLKSAAWFTKSTLSRFLDIVGSTDLVDTVKV IEGEMSQLEEARKFHLSLYAKGHEDHIESSETDICKSVDVVLASNSKVQNSSSDTSKN ELLRAMDSRLTALRSELVAAFNQAVGETCSYEEITHLAKFSENFGANDLKNFLCMFLE LSPKSQAANPPDDEKSSFSRASVNDSIIKTDGNSQISKPVCAETPVKYGVSPAKVAQV ERQSSTESEESSNSSDENQMSAERSRALIRSASPRRSASPMRRVQIGRSGSRRAPALT IKSLSYFPAREKIFSHRDVASDDSEEEGSGQSKKPEGNVRRMSVQDAINLFESKQRDQ VSDMPKKNSLTNISLGASKSVLRRWSAGMGDSSSQCQLQNASEDPVPEPSDNVIDNDI MERSAGVDLESDSRSGGQIINETIDVNLERLDESSCSPIDVQEVTDKIQEDEANERSN SSAEWSRQKEVELNQMFKKMMENQPVSCRKPQTNIRQNLPPEQRGGFYDHYKAKRDQK LRGENSGKRAEKEAKFRAMQKVLDERKAEMASKNVNNFSKKDPLTKSQKSVKNPQKVL KSPSQPANPRKEATKPSTVKKVSSRTSPLPATRKSWPSTPSPRTTGISPAKTSGGISS AGTTPTHRKPQSAQSVPRPSSKVESAQPERKNVKGTQADKRGLKSVNEKQQQRLMKGS KTPKTKVAAAPGDSSSMVPAKPSLYNKMTKKSSVVPLEAKPFLRKGSGFTSSVGLVNK IKNPSPLEDSLKTTENSIDTQESDVIVNASVLVNEHQDQDISSLDHCDDDIQLETQVN GHQKSDVIESIDELAPDVDDGLKNIAESSKCEEELTISPAAWVEIEEHQDLPNQCDDN TGENTSSASIAPVGSASPRVRHSLSQMLQEESSEADTTEWGNAENPPAMVYQKDAPKG LKRLLKFARKSKGDANITGWSSPSVFSEGEDDAEESKAINKRNADNLLRKAALQAKNY GQQKMSCEGYENHLGAHELPSAQSGISTFDAHKMHKGSVSTAASTTKGTRSFFSLSAF RGSKPSEMKLR" CDS join(25326328..25326398,25327248..25327433, 25327551..25327662,25327742..25327775,25328132..25328169, 25328302..25328336,25328445..25328597,25328759..25331283, 25331543..25331621,25331771..25331804) /locus_tag="TCM_045601" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY20242.1" /db_xref="Phytozome:POPTR_0019s09240.1" /translation="MDGGIHGDAPLDYATIQILPSQNRYEAYTCHDNKVEKLAVGVLE KLLPHLPGVSNLYTKGFNANFKLQPPENLKSAAWFTKSTLSRFLDIVGSTDLVDTVKV IEGEMSQLEEARKFHLSLYAKGHEDHIESSETDICKSVDVVLASNSKVQNSSSDTSKN ELLRAMDSRLTALRSELVAAFNQAVGETCSYEEITHLAKFSENFGANDLKNFLCMFLE LSPKSQAANPPDDEKSSFSRASVNDSIIKTDGNSQISKPVCAETPVKYGVSPAKVAQV ERQSSTESEESSNSSDENQMSAERSRALIRSASPRRSASPMRRVQIGRSGSRRAPALT IKSLSYFPAREKIFSHRDVASDDSEEEGSGQSKKPEGNVRRMSVQDAINLFESKQRDQ VSDMPKKNSLTNISLGASKSVLRRWSAGMGDSSSQCQLQNASEDPVPEPSDNVIDNDI MERSAGVDLESDSRSGGQIINETIDVNLERLDESSCSPIDVQEVTDKIQEDEANERSN SSAEWSRQKEVELNQMFKKMMENQPVSCRKPQTNIRQNLPPEQRGGFYDHYKAKRDQK LRGENSGKRAEKEAKFRAMQKVLDERKAEMASKNVNNFSKKDPLTKSQKSVKNPQKVL KSPSQPANPRKEATKPSTVKKVSSRTSPLPATRKSWPSTPSPRTTGISPAKTSGGISS AGTTPTHRKPQSAQSVPRPSSKVESAQPERKNVKGTQADKRGLKSVNEKQQQRLMKGS KTPKTKVAAAPGDSSSMVPAKPSLYNKMTKKSSVVPLEAKPFLRKGSGFTSSVGLVNK IKNPSPLEDSLKTTENSIDTQESDVIVNASVLVNEHQDQDISSLDHCDDDIQLETQVN GHQKSDVIESIDELAPDVDDGLKNIAESSKCEEELTISPAAWVEIEEHQDLPNQCDDN TGENTSSASIAPVGSASPRVRHSLSQMLQEESSEADTTEWGNAENPPAMVYQKDAPKG LKRLLKFARKSKGDANITGWSSPSVFSEGEDDAEESKAINKRNADNLLRKAALQAKNY GQQKMSCEGYENHLGAHELPSAQSGISTFDAHKMHKGSVSTAASTTKGDKVILLPFSI " mRNA join(25328127..25328169,25328299..25328336, 25328445..25328597,25328759..25331283,25331543..25331620, 25331771..25331863,25331975..25333027) /locus_tag="TCM_045601" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032875001" /inference="similar to AA sequence:Phytozome:GSVIVT01032875001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc90t14; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7301t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17416t1" CDS join(25328464..25328597,25328759..25331283, 25331543..25331620,25331771..25331838) /locus_tag="TCM_045601" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY20244.1" /db_xref="Phytozome:GSVIVT01032875001" /translation="MDSRLTALRSELVAAFNQAVGETCSYEEITHLAKFSENFGANDL KNFLCMFLELSPKSQAANPPDDEKSSFSRASVNDSIIKTDGNSQISKPVCAETPVKYG VSPAKVAQVERQSSTESEESSNSSDENQMSAERSRALIRSASPRRSASPMRRVQIGRS GSRRAPALTIKSLSYFPAREKIFSHRDVASDDSEEEGSGQSKKPEGNVRRMSVQDAIN LFESKQRDQVSDMPKKNSLTNISLGASKSVLRRWSAGMGDSSSQCQLQNASEDPVPEP SDNVIDNDIMERSAGVDLESDSRSGGQIINETIDVNLERLDESSCSPIDVQEVTDKIQ EDEANERSNSSAEWSRQKEVELNQMFKKMMENQPVSCRKPQTNIRQNLPPEQRGGFYD HYKAKRDQKLRGENSGKRAEKEAKFRAMQKVLDERKAEMASKNVNNFSKKDPLTKSQK SVKNPQKVLKSPSQPANPRKEATKPSTVKKVSSRTSPLPATRKSWPSTPSPRTTGISP AKTSGGISSAGTTPTHRKPQSAQSVPRPSSKVESAQPERKNVKGTQADKRGLKSVNEK QQQRLMKGSKTPKTKVAAAPGDSSSMVPAKPSLYNKMTKKSSVVPLEAKPFLRKGSGF TSSVGLVNKIKNPSPLEDSLKTTENSIDTQESDVIVNASVLVNEHQDQDISSLDHCDD DIQLETQVNGHQKSDVIESIDELAPDVDDGLKNIAESSKCEEELTISPAAWVEIEEHQ DLPNQCDDNTGENTSSASIAPVGSASPRVRHSLSQMLQEESSEADTTEWGNAENPPAM VYQKDAPKGLKRLLKFARKSKGDANITGWSSPSVFSEGEDDAEESKAINKRNADNLLR KAALQAKNYGQQKMSCEGYENHLGAHELPSAQSGISTFDAHKMHKGSVSTAASTTKGT RSFFSLSAFRGSKPSEMKLR" gene complement(25332617..25337610) /locus_tag="TCM_045602" /note="dbxref CacaoGD:Thecc1EG045602" mRNA complement(join(25332617..25335246,25336727..25337610)) /locus_tag="TCM_045602" /product="Glutamine-rich protein 23" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400043187" /inference="similar to AA sequence:ricco:29630.m000807" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc7682t4" CDS complement(join(25333381..25335246,25336727..25337554)) /locus_tag="TCM_045602" /note="dbxref ricco:29630.m000807" /codon_start=1 /product="Glutamine-rich protein 23" /protein_id="EOY20245.1" /db_xref="TAIR:AT1G10270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6E438" /translation="MSLVKEQVADWGNIVGDILRCIADKTYSFQDRVRMGVVCRSWQA SLKNEKINFHIFLMLAEKKNSDRRCFNIGATETILELELPEIRGKRCWGTPFGWLVTY SLDLEIELFNPLSRVSISLPSQQTLDYDIIHYTPQQLRLYFIHKVLLSSSPTSSDCIV MIIYGHRVYGEMDSLAFAKPGDQAWTQISFTSLLDDTSLLDDACLLDDVNYINGNFFA DRRTGQLILFEDLNGPFVEFAAPPPMDYPDADPDDEKKYIVDWGGHLCMIIRQHYPYK RPNAALPLSCFLHNAAFNPASENPIQNPQAHTPPPPPRSYAFTSAEEAAAERRRRKRR LRIEPPIHALRASAPSGPPTRDPNAPRLPDSTSALVGHRLNLHNRVQSLIRASDLDAA SLLARSSVFSSTRPTVFTCNAIIAAMYRNKRFNEAIALFHFFFKQSDIVPNVVSYNNL INTYCDTGEVDTAIRVYHEILENAPFNPSPVTYRHLTKGLIDAGRIGEAVDLLREMLN KGHGADSLVFNNLILGFLNLGNLDKANELFDELKERCLVYDGVVNATFMEWWFNQGKD KEAMDSYKSLLDRKFKMPPPTCNALLEVLLKHGKTKEAWALFDDMLDNHTPPNTQAVN SDTFNIMVNECFKLGNIEEAIRTFKKVGTKPGSKPFAMDVSGYNNIITRFCEHGMLSE AEKFFQELCGKSLTPDVPMYRTMIDAYLKAERVDDALQSFTKMVETGLRVVSSFGAKV FSEFLKNGKNMESASLLTKMGEKDPKPDASIYDIVVRGLCNADELDKTLDILDQMMKY SIGVTPALQEFVRGAFGKVGRNEEIDRVLNENRWRFPGPQARSWGQPPPRSLGSPPMA GQQYTGPSQMAGQQYSGPSQMAGQQPFGSSEFSGQHSLRSD" gene 25337706..25339009 /locus_tag="TCM_045603" /note="dbxref CacaoGD:Thecc1EG045603" mRNA join(25337706..25338156,25338504..25338575, 25338726..25339009) /locus_tag="TCM_045603" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045608t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s15100.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc87t19" CDS join(25337875..25338156,25338504..25338575, 25338726..25338770) /locus_tag="TCM_045603" /note="paralog of Thecc1EG045608t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /protein_id="EOY20246.1" /db_xref="Phytozome:POPTR_0016s15100.1" /db_xref="TAIR:AT1G33400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IH02" /translation="MEKLRCLVPESVKRRVAESTADDLPSVSSSLVHLFLSLPEFHQV IGDLADPGPNPKRKAGLCCKNKEAALDLKQKGNQCYSTGDYSQALRCYSQKMDLPMES LRDCSRALQISPCYPKAWYRRGKVNATLGN" gene 25339056..25341638 /locus_tag="TCM_045604" /note="dbxref CacaoGD:Thecc1EG045604" mRNA join(25339056..25339474,25339822..25340028, 25340304..25340418,25340534..25340614,25340972..25341144, 25341261..25341325,25341403..25341638) /locus_tag="TCM_045604" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045608t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s15090.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7309t1" CDS join(25339832..25340028,25340304..25340418, 25340534..25340614,25340972..25340989) /locus_tag="TCM_045604" /note="paralog of Thecc1EG045608t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20247.1" /db_xref="Phytozome:POPTR_0016s15090.1" /translation="MDYVTFVNLQAHELNDIDIKKVAHISLDETCSSLRIDSEYCLKC GSYCNLASMSEAVKKAWVNLRRLQDSITLKDMHGTELSDALRSVGILRSMLHAYNKGI GEAEDNLAQAFCFTGDLQPARDHCKASIEGLCQT" gene 25344304..25345641 /locus_tag="TCM_045607" /note="dbxref CacaoGD:Thecc1EG045607" mRNA join(25344304..25344939,25345199..25345270, 25345428..25345641) /locus_tag="TCM_045607" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7315t1" CDS join(25344793..25344939,25345199..25345270, 25345428..25345484) /locus_tag="TCM_045607" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20248.1" /translation="MMQKNQKLLIREMLITYCERLPFRERTMGNKRCRVRAMKIIWML VSFHLLNQASAHLMATKCTRAVSQLQPPLGQGHSTPFQHLGVANQVR" gene 25345841..25356080 /locus_tag="TCM_045608" /note="dbxref CacaoGD:Thecc1EG045608" mRNA join(25345841..25346303,25347241..25347344, 25347626..25347702,25348629..25348782,25348890..25348976, 25349122..25349193,25349358..25349559,25349959..25350098, 25350520..25350912,25351024..25351158,25352017..25352160, 25352709..25352864,25353013..25353240,25353628..25353794, 25354068..25354182,25354298..25354378,25355347..25356080) /locus_tag="TCM_045608" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21399" /inference="similar to AA sequence:ricco:29907.m000635" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc90t15_C2" CDS join(25346270..25346303,25347241..25347344, 25347626..25347702,25348629..25348782,25348890..25348976, 25349122..25349193,25349358..25349559,25349959..25350098, 25350520..25350912,25351024..25351158,25352017..25352160, 25352709..25352864,25353013..25353240,25353628..25353794, 25354068..25354182,25354298..25354378,25355347..25355559) /locus_tag="TCM_045608" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29907.m000635" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY20249.1" /db_xref="TAIR:AT1G33400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HR71" /translation="MFGSRESEAEGGGTSYKDDPPNQLYISYHEVHLLEVVQRIQQLL EQSKVRCEGREILALDKGLNNPISRSRPLTEFHQLIGELAKRETGLCGKNREAALDLK QKGNQCYSTRDYSQALRCYSQALRVAPIDADDMGKNLVATLYLNRASLFHKMDLPMES LRDCSRALQVSPSYPKAWYRRGKVNATLGNYEDAVNDLTVARNMEPSLGGKKQIESEL DILGQHHDRKSAKPVHYNQKSVGIPDSTNHLSDVPHQIKLHCVTTPDKGRGMASQFDI PQASLIHTEEPYAVVILKHCRETHCHYCLNELPADTIPCISCSMPLYCSQHCQVRAGG QIHFNYSNKVDICEKMSSSIEEYIADKTVGSNFDPKLECIPEHKHECQGVHWPAILPS DVVLAGRVVVKSIEQKEQFIEVPNFLETLGLCESYSKMPPESKLELNIYSIVLLFCLQ HSYSSELSINGVSTSRIVILLSQIRVNSMAIVRMKSSDVYDQQDWFRKFSSGEAETAL TSSVEQVRVGQALYITASLFNHSCRPNIHAYFISRSLVIRATEFVAGGCPLELSYGPQ VGQWDCKDRLRFLDEQYFFRCWCHGCSEVNASDLVINGFCCVNPNCSGVVLDKLVANC EKQKPKIPETIGVESHLQVHELNDIDIKKAAHISLDETRSSLRIDSEYCLKCGSYCNL ASMSEAVKKAWINLRRLQDSITLKDMHGTELSDALRSVGILRSILHAYNKGIGEAEDN LAQAFCFTGDLQPARDHCKASIEILEKLYGPDHIVIGYELVKLSSIQLWLGDCAAVDS INRLSLIFSRYYGPDAGIIFPYLGFLRRKSCHIVH" gene complement(25346726..25348070) /locus_tag="TCM_045609" /note="dbxref CacaoGD:Thecc1EG045609" mRNA complement(25346726..25348070) /locus_tag="TCM_045609" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400016871" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046332t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400016871" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete; inference alignment:Velvet:11:TSA:cacao3v3sc10rLoc1208t1" CDS complement(25346872..25348008) /locus_tag="TCM_045609" /note="paralog of Thecc1EG046332t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20251.1" /db_xref="Phytozome:PGSC0003DMP400016871" /translation="MSLVKEQVADWGNIVGDILRCIADKTYSFQDRVRMGVVCRSWQA SLKNEKINFHIFLMLAEKKNSDRRCFNIGATETILELELPEIRGKRCWGTPFGWLVTY GLDLEIGLFNPLSRASISLPSQRTLDYDITHHTPQQLRLYFIHKVLLSSSPTSSDCIV MIIYGRVVDGEMDSLAFAKPGDQAWTQIPFTSLLDDVNYFNGNFFAVSSMGQLFLFED LNGPAPKVVEFAAPPPIDEPHDKKYIVDLGGHLCMMSRLQFPNEVSYDSGKVEQVNLT EDFDIFKLDMHTKNWERILSLGDHSLFLGNCSTFSVLAADHPGCKPNCIYFTDDNPYY YTRVSVSDIGIYNCDIREDVDYIDDDEVPDLLNSFSPPLWIKLF" mRNA join(25348366..25348727,25349356..25349559, 25349959..25350098,25350520..25350912,25351024..25351158, 25352017..25352160,25352709..25352864,25353013..25353240, 25353628..25353794,25354068..25354182,25354298..25354378, 25355347..>25355545) /locus_tag="TCM_045608" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene21399" /inference="similar to AA sequence:Phytozome:POPTR_0016s15090.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc87t20_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc90t15_C2" CDS join(25349439..25349559,25349959..25350098, 25350520..25350912,25351024..25351158,25352017..25352160, 25352709..25352864,25353013..25353240,25353628..25353794, 25354068..25354182,25354298..25354378,25355347..>25355544) /locus_tag="TCM_045608" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 2" /protein_id="EOY20250.1" /db_xref="Phytozome:POPTR_0016s15090.1" /db_xref="TAIR:AT1G33400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HR71" /translation="MEPSLGGKKQIESELDILGQHHDRKSAKPVHYNQKSVGIPDSTN HLSDVPHQIKLHCVTTPDKGRGMASQFDIPQASLIHTEEPYAVVILKHCRETHCHYCL NELPADTIPCISCSMPLYCSQHCQVRAGGQIHFNYSNKVDICEKMSSSIEEYIADKTV GSNFDPKLECIPEHKHECQGVHWPAILPSDVVLAGRVVVKSIEQKEQFIEVPNFLETL GLCESYSKMPPESKLELNIYSIVLLFCLQHSYSSELSINGVSTSRIVILLSQIRVNSM AIVRMKSSDVYDQQDWFRKFSSGEAETALTSSVEQVRVGQALYITASLFNHSCRPNIH AYFISRSLVIRATEFVAGGCPLELSYGPQVGQWDCKDRLRFLDEQYFFRCWCHGCSEV NASDLVINGFCCVNPNCSGVVLDKLVANCEKQKPKIPETIGVESHLQVHELNDIDIKK AAHISLDETRSSLRIDSEYCLKCGSYCNLASMSEAVKKAWINLRRLQDSITLKDMHGT ELSDALRSVGILRSILHAYNKGIGEAEDNLAQAFCFTGDLQPARDHCKASIEILEKLY GPDHIVIGYELVKLSSIQLWLGDCAAVDSINRLSLIFSRYYGPDAGIIFPYLGFLRRK SC" gene complement(25357526..25369558) /locus_tag="TCM_045610" /note="dbxref CacaoGD:Thecc1EG045610" mRNA complement(join(25357526..25358678,25361336..25361562, 25361755..25362074,25362642..25362778,25362892..25362996, 25363606..25363869,25364037..25364198,25364673..25364750, 25366274..25366355,25366458..25366633,25366712..25366787, 25367097..25367239,25367398..25367559,25367655..25367828, 25367901..25368664,25369443..25369490)) /locus_tag="TCM_045610" /product="Sec23/Sec24 protein transport family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29709.m001233" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020184t1" /inference="similar to AA sequence:ricco:29709.m001233" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc528t9_C2" CDS complement(join(25358511..25358678,25361336..25361562, 25361755..25362074,25362642..25362778,25362892..25362996, 25363606..25363869,25364037..25364198,25364673..25364750, 25366274..25366355,25366458..25366633,25366712..25366787, 25367097..25367239,25367398..25367559,25367655..25367828, 25367901..25368623)) /locus_tag="TCM_045610" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29709.m001233; paralog of Thecc1EG020184t1" /codon_start=1 /product="Sec23/Sec24 protein transport family protein isoform 1" /protein_id="EOY20252.1" /db_xref="TAIR:AT2G21630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9FX55" /translation="MAEFMELEGQDGVRMAWNVVPGTKQEASNCVVPVSAIYTPIKPF PNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPA ELFPQYTTIEYQSPGEASSLPPVFMFVLDTSIIEEEMAFLKSSLSQAIGLLPDNSLVG LITFGTLVHVHELGFGAIPKTYVFKGSKDVSKDQLLEQMSFFLNKPKPTTGVIAGARD GLSSESIARFLLPASECEFALNSVLEELQKDPWPIPADQRATRCTSTALSVAASLLGA CVPGSGARIMAFIGGPSTEGPGAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYEALA KQLVHQGHVLDLFACALDQVGVAELKVAVERTGGLVVLAESFGHSVFKDSLRRVFQSE DKDLGISSNGIFEINCSKDIKVQGILGPCASLEKKGPLCSDTIVGQGSTSAWKMCGLD QATSLCLIFEIVKKDIPDSTVQSSGNQFYFQFLTYYQHSTGEMRLRVTTLSRRWVAGP GSIQDLIAGFDQEAAAVVMARFVSFKMEIEAEFDPIRWLDKALIHICSRFGDYQKDSP SSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMIQPSL ISYSFQSAPEPALLDVAAIAADRILLLDSYFTIVIFHGSTIAQWRKAGYHNQPEHQAF AQLLQAPRGDADAIIKERFPVPRLVICDQHGSQARFLLAKLNPSATYNSDGHHPGGDI IFTDDVSFEVFLDHLQRLAVQTKRKNSNQCLREAIDGLGVPSESEGRGGEAPSLILSE KLYFPITINMKGRSAYVPPPYIPLGQSDQELPPPAGDGPASPPQSQSQSQSQPLQWSS GICACCDDMQSCCIGLFFPCFLFGKNAQFMGSGTLVGSCITHFILWAFANTLCCMLTQ GLFLGLPGCFLSCYACGYRRALRARYNLQEAPCGDLATHFFCHLCAICQEYREIRERA GDCEPPDLKLAVVTAPAVQTMESSGL" mRNA complement(join(25362462..25362778,25362892..25362996, 25363606..25363869,25364037..25364198,25364673..25364750, 25366274..25366355,25366458..25366633,25366712..25366787, 25367097..25367239,25367398..25367559,25367655..25367828, 25367901..25368664,25369443..25369558)) /locus_tag="TCM_045610" /product="Sec23/Sec24 protein transport family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29709.m001233" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020184t1" /inference="similar to AA sequence:ricco:29709.m001233" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7249t2; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc528t9_C2" CDS complement(join(25362638..25362778,25362892..25362996, 25363606..25363869,25364037..25364198,25364673..25364750, 25366274..25366355,25366458..25366633,25366712..25366787, 25367097..25367239,25367398..25367559,25367655..25367828, 25367901..25368623)) /locus_tag="TCM_045610" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29709.m001233; paralog of Thecc1EG020184t1" /codon_start=1 /product="Sec23/Sec24 protein transport family protein isoform 2" /protein_id="EOY20253.1" /db_xref="TAIR:AT2G21630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9FX55" /translation="MAEFMELEGQDGVRMAWNVVPGTKQEASNCVVPVSAIYTPIKPF PNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPA ELFPQYTTIEYQSPGEASSLPPVFMFVLDTSIIEEEMAFLKSSLSQAIGLLPDNSLVG LITFGTLVHVHELGFGAIPKTYVFKGSKDVSKDQLLEQMSFFLNKPKPTTGVIAGARD GLSSESIARFLLPASECEFALNSVLEELQKDPWPIPADQRATRCTSTALSVAASLLGA CVPGSGARIMAFIGGPSTEGPGAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYEALA KQLVHQGHVLDLFACALDQVGVAELKVAVERTGGLVVLAESFGHSVFKDSLRRVFQSE DKDLGISSNGIFEINCSKDIKVQGILGPCASLEKKGPLCSDTIVGQGSTSAWKMCGLD QATSLCLIFEIVKKDIPDSTVQSSGNQFYFQFLTYYQHSTGEMRLRVTTLSRRWVAGP GSIQDLIAGFDQEAAAVVMARFVSFKMEIEAEFDPIRWLDKALIHICSRFGDYQKDSP SSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMIQPSL ISYSFQSAPEPALLDVAAIAADRILLLDSYFTIVIFHGSTIAQWRKAGYHNQPEHQAF AQLLQAPRGDADAIIKERFPVPRLVICDQHGSQARFLLAKLNPSATYNSDGHHPGGDI IFTDDVSFEVFLDHLQRLAVQ" gene 25369780..25371581 /locus_tag="TCM_045611" /note="dbxref CacaoGD:Thecc1EG045611" mRNA join(25369780..25370671,25370829..25370913, 25371032..25371522) /locus_tag="TCM_045611" /product="Nucleic acid-binding isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038277001" /inference="similar to AA sequence:ricco:28966.m000541" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc571t1; inference alignment:Velvet:11:TSA:cacao3vel5sc10rLoc571t1; inference alignment:Newbler:10:TSA:cgbaL_g15526t00001" mRNA join(25369784..25370671,25370829..25371054) /locus_tag="TCM_045611" /product="Nucleic acid-binding isoform 3" /inference="similar to AA sequence:ricco:28966.m000541" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc560t2" mRNA join(25369881..25370671,25371032..25371581) /locus_tag="TCM_045611" /product="Nucleic acid-binding isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038277001" /inference="similar to AA sequence:ricco:28966.m000541" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15526t00001" CDS join(25370021..25370671,25371032..25371175) /locus_tag="TCM_045611" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28966.m000541" /codon_start=1 /product="Nucleic acid-binding isoform 1" /protein_id="EOY20254.1" /db_xref="TAIR:AT3G59980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6SX59" /translation="MGMATTMGLRGLSLSGCSLPLLRSLKAKPPTSSYPTARAFAATT GTTSTLKALLSPYNPIILRGCPSFCVAPNANAAATAPSESNGDDPTDNIKDAANLLDL RVGRIIKAWRHEEADSLYVEEVDVGEPEPRIICSGLVNYIPLHLLEYAKVVVFANLKP RNMRGVKSCGMLMAASDASHQNFELLVPPEASVPGERIWFGTEHDKDNLPDPATPNQV QKKKIWELVQPHLKTDASCTAMLGEHLMQTSTGVVVCKSLKNANIS" CDS join(25370021..25370671,25370829..25370913, 25371032..25371075) /locus_tag="TCM_045611" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28966.m000541" /codon_start=1 /product="Nucleic acid-binding isoform 2" /protein_id="EOY20255.1" /db_xref="TAIR:AT3G59980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1X8" /translation="MGMATTMGLRGLSLSGCSLPLLRSLKAKPPTSSYPTARAFAATT GTTSTLKALLSPYNPIILRGCPSFCVAPNANAAATAPSESNGDDPTDNIKDAANLLDL RVGRIIKAWRHEEADSLYVEEVDVGEPEPRIICSGLVNYIPLHLLEYAKVVVFANLKP RNMRGVKSCGMLMAASDASHQNFELLVPPEASVPGERIWFGTEHDKDNLPDPATPNQI VASGKVAGFLVLHIAKPIRHYCLRKLKGSKEKDLGIGAASS" CDS join(25370021..25370671,25370829..25370960) /locus_tag="TCM_045611" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28966.m000541" /codon_start=1 /product="Nucleic acid-binding isoform 3" /protein_id="EOY20256.1" /db_xref="TAIR:AT3G59980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6SX59" /translation="MGMATTMGLRGLSLSGCSLPLLRSLKAKPPTSSYPTARAFAATT GTTSTLKALLSPYNPIILRGCPSFCVAPNANAAATAPSESNGDDPTDNIKDAANLLDL RVGRIIKAWRHEEADSLYVEEVDVGEPEPRIICSGLVNYIPLHLLEYAKVVVFANLKP RNMRGVKSCGMLMAASDASHQNFELLVPPEASVPGERIWFGTEHDKDNLPDPATPNQI VASGKVAGFLVLHIAKPIRHYCLRKLKGLKLSIIVLGFSLVI" mobile_element 25372991..25373169 /note="source:INTACT1432F_F101_scaffold_9-int 13503 13683" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(25373014..25374259) /note="source:scaffold_6_CACTA_0699 17234 18436" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25373151..25376219) /note="source:CACAO_M_E11810_F82_scaffold_2 1 3075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25376405..25377841) /note="source:CACAO_M_E33643_F228_scaffold_4 1 1475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25381503..25381565 /note="source:CACAO_Mutator_E206_scaffold_1 9805 9868" /mobile_element_type="transposon:TIR/Mutator" gene complement(25385942..25387541) /locus_tag="TCM_045614" /note="dbxref CacaoGD:Thecc1EG045614" mRNA complement(join(25385942..25387008,25387342..25387541)) /locus_tag="TCM_045614" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(25386860..25387008,25387342..25387483)) /locus_tag="TCM_045614" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20257.1" /translation="MQPSSDTIEGLMPYSNHIATFKDEATSDQGEDDWFLTSEDYFAD DSDANEQKRIMIIMKEMMSLIVNRLSRTLPMKDQIQVVNLVTNVTELKLEVK" gene 25389476..25394162 /locus_tag="TCM_045615" /note="dbxref CacaoGD:Thecc1EG045615" mRNA join(25389476..25389883,25389985..25390074, 25390175..25390249,25390367..25390497,25390837..25390891, 25391256..25391408,25391694..25391762,25391846..25391956, 25392311..25392379,25392529..25392583,25393833..25394162) /locus_tag="TCM_045615" /product="Mitochondrial substrate carrier family protein" /inference="alignment:exonerate-protein:2:frave:gene29309" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042599t1" /inference="similar to AA sequence:frave:gene29309" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01727t00002" CDS join(25389803..25389883,25389985..25390074, 25390175..25390249,25390367..25390497,25390837..25390891, 25391256..25391408,25391694..25391762,25391846..25391956, 25392311..25392379,25392529..25392583,25393833..25394017) /locus_tag="TCM_045615" /note="dbxref frave:gene29309; paralog of Thecc1EG042599t1" /codon_start=1 /product="Mitochondrial substrate carrier family protein" /protein_id="EOY20258.1" /db_xref="TAIR:AT2G39970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0J0H7" /translation="MSNAIANGVAGAGAGIVAQIITYPLQTVNTRQQTERVAKSKPSA ACTGTGTLLQILHVLRTEGWGGLYSGLKPSLFGTAASQGIYYYFYQLFKNKAEAIAAA RKQKGRGDGTVGMFSWLLVAALAGSLNVLLTNPIWVLVTRMQTHTQAERKIAELKREA LLREASENSLISSRLQDKLAELDSTKPHPYGTIQAAHEVYTEAGIRGFWKGIIPTLIM VCNPSIQFMIYESSLKRLKEKRAANNKHGLKNVTALEVFALGALAKLGATVTTYPLLV VKSRLQAKQEIGGNISLRYSGTVDAIIKMMRYEGLRGFYKGMSTKIVQSVFAASVLFM VKEELVKAYMFLIHKMLNKLIMY" gene complement(25393996..25399882) /locus_tag="TCM_045616" /note="dbxref CacaoGD:Thecc1EG045616" mRNA complement(join(25393996..25394241,25395507..25395646, 25396617..25396983,25397087..25397273,25397593..25398148, 25398374..25398709,25398800..25399027,25399132..25399477, 25399651..25399882)) /locus_tag="TCM_045616" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015910001" /inference="similar to AA sequence:Phytozome:POPTR_0002s00200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b043991t1a2; alternateUTRof:Thecc1EG045616t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7269t3" mRNA complement(join(25394527..25395646,25396617..25396983, 25397087..25397273,25397593..25398148,25398374..25398709, 25398800..25399027,25399132..25399477,25399651..25399746)) /locus_tag="TCM_045616" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015910001" /inference="similar to AA sequence:Phytozome:POPTR_0002s00200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc10rg7269t3" CDS complement(join(25395521..25395646,25396617..25396983, 25397087..25397273,25397593..25398148,25398374..25398709, 25398800..25399027,25399132..25399404)) /locus_tag="TCM_045616" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY20259.1" /db_xref="Phytozome:POPTR_0002s00200.1" /db_xref="TAIR:AT1G79600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GPJ6" /translation="MSLVVSAGGHSFCLQARRGFSISKSKLPKLSARAALTEARPRVN GSLAVQVLGGDRAEDLQAEARAMARAANASVYSPELLARKYGSRPVQVLKRTLEILVA LGSFALKLLLEQRNGTLDRNKRKRAAELRTIFTRLGPTFVKLGQGLSTRPDICPPEYL EELARLQDALPTFPDADAFSCIETELGVPLDSIFSSISPSPIAAASLGQVYKAQLKHS GQTVAVKVQRPGIEEAIGLDFYLIRGLGFLINKYVDIISSDVVALIDEFARRVYQELN YVQEGQNARKFKMLYADREDILVPDIFWNYTSGKVLTMDWVDGVKLNEQAAIESQGLK VLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSETPEEARSAI IGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRDFFDDALSYTVSELNFKTL VDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDP NPYLRDALIELLFKDGRFRWNRLENLLVQGRKDRDFTAKDALQPVLKLLLGPDGEELR TLVIKEAVRVTEAVALCTVVDTYNSVPPFMRTLMFNGNGGGPLAMSAAELESMIELRD QVFRIWGLLRSSENFDPALLQPILQVLQQRDARMLGGRVVGGITQRLAARLLQQVLRT PTVPTSSL" CDS complement(join(25395521..25395646,25396617..25396983, 25397087..25397273,25397593..25398148,25398374..25398709, 25398800..25399027,25399132..25399404)) /locus_tag="TCM_045616" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY20260.1" /db_xref="Phytozome:POPTR_0002s00200.1" /db_xref="TAIR:AT1G79600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GPJ6" /translation="MSLVVSAGGHSFCLQARRGFSISKSKLPKLSARAALTEARPRVN GSLAVQVLGGDRAEDLQAEARAMARAANASVYSPELLARKYGSRPVQVLKRTLEILVA LGSFALKLLLEQRNGTLDRNKRKRAAELRTIFTRLGPTFVKLGQGLSTRPDICPPEYL EELARLQDALPTFPDADAFSCIETELGVPLDSIFSSISPSPIAAASLGQVYKAQLKHS GQTVAVKVQRPGIEEAIGLDFYLIRGLGFLINKYVDIISSDVVALIDEFARRVYQELN YVQEGQNARKFKMLYADREDILVPDIFWNYTSGKVLTMDWVDGVKLNEQAAIESQGLK VLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSETPEEARSAI IGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRDFFDDALSYTVSELNFKTL VDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDP NPYLRDALIELLFKDGRFRWNRLENLLVQGRKDRDFTAKDALQPVLKLLLGPDGEELR TLVIKEAVRVTEAVALCTVVDTYNSVPPFMRTLMFNGNGGGPLAMSAAELESMIELRD QVFRIWGLLRSSENFDPALLQPILQVLQQRDARMLGGRVVGGITQRLAARLLQQVLRT PTVPTSSL" gene 25399984..25406115 /locus_tag="TCM_045617" /note="dbxref CacaoGD:Thecc1EG045617" mRNA join(25399984..25399993,25400309..25400595, 25400681..25400732,25400847..25400926,25401221..25401342, 25401426..25401515,25402629..25402728,25403774..25404232, 25405719..25406115) /locus_tag="TCM_045617" /product="Hydrolase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024568t3" /inference="similar to AA sequence:Phytozome:GSVIVT01037139001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02035t00002" CDS join(25400523..25400595,25400681..25400732, 25400847..25400926,25401221..25401342,25401426..25401479) /locus_tag="TCM_045617" /note="paralog of Thecc1EG024568t3" /codon_start=1 /product="Hydrolase, putative" /protein_id="EOY20261.1" /db_xref="Phytozome:GSVIVT01037139001" /db_xref="TAIR:AT5G24670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S6Y4" /translation="MDKYTLQIIHTTDKPRVPHGQQPTVNVYASVIDAKHANTLVRRL NQIAPLENLRHVKRIQRMHLQVQGGSPELSVILCLACENETQSNSMPLEVQEIVNSYN LCPFIIKWVIQYKGVLKCVDNNEQ" mobile_element 25400963..25401002 /note="source:CACAO_M_E42809_F5_scaffold_5 6331 6370" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25401277..25404181 /locus_tag="TCM_045619" /note="dbxref CacaoGD:Thecc1EG045619" mRNA join(25401277..25401306,25401426..25401515, 25402629..25402728,25403774..25404181) /locus_tag="TCM_045619" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024568t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8181t1; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8181t3" mRNA join(25401313..25401342,25401426..25401515, 25402629..25402728,25403774..25404139) /locus_tag="TCM_045619" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024568t1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc8297t6_C2; alternateUTRof:Thecc1EG045619t2; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8181t3" mRNA join(25402375..25402728,25403774..25404181) /locus_tag="TCM_045619" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024568t1" /inference="similar to AA sequence:ricco:30074.m001345" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8181t3; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc8181t3" CDS join(25402579..25402728,25403774..25404076) /locus_tag="TCM_045619" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30074.m001345; paralog of Thecc1EG024568t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY20262.1" /translation="MFPDMLALQSLFFSICSNIDGITGFSEEDTKSVFSFMKSTVELA KSGDSLVSNPTIIVDPSVKLIIASACDEVCSWHMQTDKAKTETCCFKQLETFTSHADA NRIARDITMVSNGSINNLQQCYTAVSCLKPRQWAQQPLHTSPCYWHPL" CDS join(25402687..25402728,25403774..25404076) /locus_tag="TCM_045619" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG024568t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY20263.1" /translation="MKSTVELAKSGDSLVSNPTIIVDPSVKLIIASACDEVCSWHMQT DKAKTETCCFKQLETFTSHADANRIARDITMVSNGSINNLQQCYTAVSCLKPRQWAQQ PLHTSPCYWHPL" CDS join(25402687..25402728,25403774..25404076) /locus_tag="TCM_045619" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG024568t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY20264.1" /translation="MKSTVELAKSGDSLVSNPTIIVDPSVKLIIASACDEVCSWHMQT DKAKTETCCFKQLETFTSHADANRIARDITMVSNGSINNLQQCYTAVSCLKPRQWAQQ PLHTSPCYWHPL" mobile_element complement(25403111..25403175) /note="source:CACAO_hAT_E3863_scaffold_9 1757 1827" /mobile_element_type="transposon:TIR/hAT" mobile_element 25408822..25408900 /note="source:INTACT336_F12_scaffold_2-int 9491 9570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25408830..25409040) /note="source:MITE_Unknow_TSD_5_9 1 211" /mobile_element_type="transposon:TIR/MITE" mobile_element 25409563..25410472 /note="source:CACAO_M_E11357_F268_scaffold_2 1 923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25410928..25411372 /note="source:CACAO_on_E33_A_scaffold_3 7552 8002" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(25410994..25411489) /note="source:CACAO_on_E172_scaffold_5 2498 2989" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(25411443..25411660) /note="source:CACAO_MITE_S192_scaffold_8 228 436" /mobile_element_type="transposon:TIR/MITE" mobile_element 25411490..25412047 /note="source:CACAO_on_E745_scaffold_10 1 600" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25412239..25412470 /note="source:CACAO_MITE47_scaffold_3 184 419" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(25412262..25412471) /note="source:CACAO_on_E446_scaffold_2 954 1164" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 25412395..25433999 /locus_tag="TCM_045620" /note="dbxref CacaoGD:Thecc1EG045620" mRNA join(25412395..25412523,25422394..25422476, 25422601..25422700,25423245..25423469,25423552..25423694, 25423966..25424151,25424642..25424809,25424921..25425358, 25433739..25433768,25433890..25433999) /locus_tag="TCM_045620" /product="Heteroglycan glucosidase 1" /inference="alignment:exonerate- protein:2:ricco:29827.m002602" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016752t2" /inference="similar to AA sequence:Phytozome:GSVIVT01022815001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc17434t1_G2" mobile_element complement(25412468..25413230) /note="source:CACAO_on_E683_scaffold_9 1 767" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25415404..25415745 /note="source:CACAO_PIF_E465_scaffold_115 2632 2988" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25418983..25419128 /note="source:INTACT405F_F91_scaffold_4-int 15142 15290" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25418997..25419154 /note="source:INTACT666_F293_scaffold_9-int 136 323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25419455..25420153 /note="source:CACAO_M_E23991_F4_scaffold_4 6125 6818" /mobile_element_type="retrotransposon:LTR/Copia" gene 25420924..25421915 /locus_tag="TCM_045621" /note="dbxref CacaoGD:Thecc1EG045621" mRNA join(25420924..25421178,25421350..25421418, 25421502..25421639,25421746..25421915) /locus_tag="TCM_045621" /product="Heteroglycan glucosidase 1" /inference="alignment:exonerate- protein:2:ricco:29827.m002602" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016752t2" /inference="similar to AA sequence:Phytozome:Glyma04g14810.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc10rLoc918t2_G2" CDS join(25420927..25421178,25421350..25421418, 25421502..25421639,25421746..25421898) /locus_tag="TCM_045621" /note="paralog of Thecc1EG016752t2" /codon_start=1 /product="Heteroglycan glucosidase 1" /protein_id="EOY20266.1" /db_xref="Phytozome:Glyma04g14810.1" /db_xref="TAIR:AT3G23640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Y12" /translation="MSKMANSEVKEAASDSTAGKMIFEPILEDGVFRFDCSANDRDAA YPSLSFMNSNDRDVPIMSNKVPLYIPSFECLLGQQLVKLELPVGTSFYGTGEVSGQLE RTGKRVFTWNTDAWGYGPGTTSLYQSHPWVLAVLPNGEALGILADTTRRCEIDLRIKC RIQFNAPASFPVITFGPFPSPSAVLISLSHAIGNFQTYTTIAP" CDS join(25423277..25423469,25423552..25423694, 25423966..25424151,25424642..25424809,25424921..25425064) /locus_tag="TCM_045620" /note="paralog of Thecc1EG016752t2" /codon_start=1 /product="Heteroglycan glucosidase 1" /protein_id="EOY20265.1" /db_xref="Phytozome:GSVIVT01022815001" /db_xref="TAIR:AT3G23640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Y12" /translation="MNVDDFPQERFPDPKSLVKDLHHIGFKAIWMPDPGIKHEKGYFV YDSGTDHDAWIQEANGMYFVGDVWPGPCVFPDFTQSKIRSWWANLVRDFISNGVDGIW NDMNEPAIFKAYGMLMARSTYEEMELADKRKHPFVLTRAGFIASQRYAAMWTGDNLSN WEHLHMSISMVLQLGLSGQPLSRPDIGGFAGNATPKLFGRWMGFGAMFPLCHGHSETD TINHEPWSFGEEEPPMCVLQLKYVLKQEGLKIIILQLVRLSPKGVHGDFHCVWEFIAQ A" mobile_element complement(25425185..25425298) /note="source:CACAO_Again_on_E11_scaffold_1 424 537" /mobile_element_type="transposon:TIR/hAT" gene complement(25433960..25441445) /locus_tag="TCM_045622" /note="dbxref CacaoGD:Thecc1EG045622" mRNA complement(join(25433960..25434130,25434261..25434540, 25435045..25435096,25435235..25435791,25436023..25436323, 25436408..25437017,25437256..25437414,25437505..25437618, 25437778..25437970,25438363..25439322,25439395..25440204, 25440287..25440438,25441062..25441098,25441351..25441445)) /locus_tag="TCM_045622" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005953t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040846" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete; weak similarity to RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, Endonuclease/exonuclease/phosphatase" CDS complement(join(25434117..25434130,25434261..25434540, 25435045..25435096,25435235..25435791,25436023..25436323, 25436408..25437017,25437256..25437414,25437505..25437618, 25437778..25437970,25438363..25439322,25439395..25439853)) /locus_tag="TCM_045622" /note="paralog of Thecc1EG005953t1; weak similarity to RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, Endonuclease/exonuclease/phosphatase" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY20267.1" /db_xref="Phytozome:PGSC0003DMP400040846" /translation="MPDYCTHCCQVGHNASACLVLGNKPKKQGLVSTKPLGSKKRLTD DDSGKAGDERQKPSMGEKIVIGDDRKREKVGTTDLEKRNILSGDEPLKQTTQGEAVRE MVVEDLGKRKKLSLEEPRQNKQWQVIGKPSTSGLKHSKRVDIEAAMAKHASGQTGDVN SNLMGKNNFLGASLCTTERQGSVAVGLDRKQEDRRMSRDELKDDQYPQAVYEKGEELI VVEKVATIANRNSTHARVVVSWQTGANTNDSVEQVRDFNGVKWALEAGQVTVRKPKKE NSHKTEDRLSVAAVYGEGLTKSATEQQSENVNMQSKSLSLNVEEVQDDGDNSSKNVMR LSQLESKRSPSQRGCFHDTVHLIATDGNASVLKTVADTCDTLEGRDENDPHMGLYLTI CGLNKALSIVPSNGGTSSFPTHAVHAGSNDTGSRLSPVQPHAVYASDNLEVHPCVSRR RKSESSLYSQGNWNSLNASEPVEERLELWNCLRSISWDMQGPWMVGGDFNSILNSTER LHGAQPHSGSMEDFATMLLDCGLLDAGYEVPRGPSNFRFLHAWTHHHDFIPFVERSWK MPMQATGMLAEAEAAEKELLFQQDPSILNRNLMHKAYAKLNCQLSIEESFWQQKSGVK WLVEAPSLSKIKEVVFNINKDSVASPDGFSSLFYQHCWDIIKQDLLEAVLDFFKGSSL PRGVTSTTLVLLPKMPNACQWSDFRPISLCTVLNKIVTKLLANRLAKLLPSIISENQS AFVNDRLISDNILLAQELIGKIDGKSRGGNVVLKLDMAKAYDRLHWDFLYLMLEHFGF NTQWINMIKACISNCWFSLLINGSLVGYFKSERRRYHSLQYLSGCLMPISHLSFADDI VIFTNGCRSSLQKILNFLQEYEQVSGQQVNHQKSCFITANGYALSRRQIISHTTGFHH KTLPVTYLGAPLHKGPKKTAWSKITFPVSEGGLDIRNLRDVFEAFSLKLWWRFQTCNS LWTRFLRTKYCLGRIPHFVQPKLHDSQVWKQMIVGRDVALQNIRWRIGKGELFFWHDC WMGDQPLATLCPSFHNYMSHVHKFYNGDVWDIEKLNSCLPTSLVDEILQIPFDRSQED VAYWALTSNGDFSFWSAWEAIRQRQTPNALSEESLIHVLWENPVAKQAELHALLRGLL LCKEWNITNLWIEMDALVAVQMVQQSKKGSHDLRYLLESIRMCLRSFSYRISHICREG NQAADFLSNKGQTHQSLYVFSEAQAGDL" mobile_element complement(25440733..25440865) /note="source:CACAO_LINE_E_216_scaffold_8 7656 7774" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(25441406..25446155) /note="source:CACAO_LINE_E_197_scaffold_7 3040 7792" /mobile_element_type="retrotransposon:LINE/L1" CONTIG join(KE132980.1:1..6700353,gap(10000),KE132981.1:1..2083360, gap(10000),KE132982.1:1..1486694,gap(10000),KE132983.1:1..2427738, gap(10000),KE132984.1:1..1855733,gap(10000),KE132985.1:1..277240, gap(10000),KE132986.1:1..343371,gap(10000),KE132987.1:1..2706696, gap(10000),KE132988.1:1..1907951,gap(10000),KE132989.1:1..1977024, gap(10000),KE132990.1:1..1360196,gap(10000),KE132991.1:1..2212483) //